Psyllid ID: psy5697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM
Secondary Structure (PSIPRED)
ccEEEEEEEEEEccEEEEEcccccccccEEEEEEEEEccccccccccEEEEccccccccccEEEEcEEEccccEEEEEEcccEEEccccccEEEEccccEEEccccccccccccccEEEEEEEEEccEEEEEEcEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccEEEEEccccccccEEEEEEccccccccccccccEEcccccccccccccEEEEEccccccEEEEEEccccccccccccEEEccccEEEEccccHHHHHHHHHHHHEEEEEccccEEEEEccEEEEEEEEccc
Coil and Loop (DISEMBL)
LLNFHISTlladadtyiiadrslfprplgylvgnivyssrsenehypfriksapggnrtrgleltrqtryepsqlgwrfsnNTVIAYVKDLRIAlsngslmfppfpetgfrpdvhstvyrcrasneaGVILSRFVhvkadsripm
Flexible Loop (DISEMBL)
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSsrsenehypfriksapggnrtrGLELtrqtryepsqlgwrfsnNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAsneagvilsrfvhvkadsripm
Low Complexity Region (SEG)
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM
Disordered region (IsUnstruct)
**NFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSS******************************YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK*******
Disordered Region (DISOPRED)
**NFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYS*************************LTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPE*****DVHSTVYRCRASNEAGVILSRFVHVKADSRIP*
Disordered Region (DISEMBL)
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM
Disordered Region (DISPRO)
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLNFHISTLLADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKADSRIPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.434	0.030	0.396	3e-08
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.503	0.036	0.369	1e-05
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.503	0.036	0.369	1e-05
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.503	0.036	0.369	1e-05

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)

Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W  ++ + +  +  +R  L NG+L+  PF    +  DVH+T+YRC ASN  G I+SR V 
Sbjct: 65  WVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQ 124

Query: 137 VKA 139
           V+A
Sbjct: 125 VRA 127

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct: 53  PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query: 132 SRFVHVKADSRIP 144
           S+ VH+KA  R P
Sbjct: 113 SQDVHIKAVLREP 125

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct: 53  PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query: 132 SRFVHVKADSRIP 144
           S+ VH+KA  R P
Sbjct: 113 SQDVHIKAVLREP 125

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct: 53  PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query: 132 SRFVHVKADSRIP 144
           S+ VH+KA  R P
Sbjct: 113 SQDVHIKAVLREP 125

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
270014590	221	hypothetical protein TcasGA2_TC004629 [T	0.924	0.606	0.347	2e-13
269115798	1587	Down syndrome cell adhesion molecule [Li	0.489	0.044	0.492	7e-11
195444008	2028	GK11449 [Drosophila willistoni] gi|19416	0.468	0.033	0.5	5e-10
195110685	2025	GI22819 [Drosophila mojavensis] gi|19391	0.468	0.033	0.5	5e-10
195349089	2097	GM15359 [Drosophila sechellia] gi|194122	0.572	0.039	0.458	6e-10
195055999	2029	GH17490 [Drosophila grimshawi] gi|193892	0.448	0.032	0.507	7e-10
189238865	1918	PREDICTED: similar to AGAP007092-PA [Tri	0.455	0.034	0.424	9e-10
195391526	2064	GJ22820 [Drosophila virilis] gi|19415249	0.448	0.031	0.507	1e-09
198451327	2077	GA16078 [Drosophila pseudoobscura pseudo	0.468	0.032	0.485	1e-09
194745280	2078	GF18608 [Drosophila ananassae] gi|190628	0.572	0.039	0.458	1e-09

>gi|270014590|gb|EFA11038.1| hypothetical protein TcasGA2_TC004629 [Tribolium castaneum]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 4/138 (2%)

Query: 10  LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG---NRTRGLELTR 66
           L   D  ++ +R+ F   +  ++     S      H P  +   P     + T G +++ 
Sbjct: 48  LVRGDERMMCNRATFSYEIWLMIYCDHVSEAVCESHGPVFLLEPPAHLTFSNTTGSQVSC 107

Query: 67  QTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN 125
                P+ Q+ W   +   +  V  LR +L NG+L FPPF    +R DVHSTVYRCRASN
Sbjct: 108 SAHGSPTPQVDWLLQDGQTVTAVPGLRQSLGNGTLYFPPFRAEDYRKDVHSTVYRCRASN 167

Query: 126 EAGVILSRFVHVKADSRI 143
            AG ILSR V+V+A ++I
Sbjct: 168 LAGTILSRDVNVRAANKI 185

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|269115798|gb|ACZ26466.1| Down syndrome cell adhesion molecule [Litopenaeus vannamei]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 46/71 (64%)

Query: 69  RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG 128
           R  PS +  R  N + I  V  LR+ LSNG+L+FPPF    +R +VH+ VYRC+ASN  G
Sbjct: 53  RPAPSVVWVRADNGSAIGVVPGLRMVLSNGTLIFPPFRAEDYRQEVHAQVYRCQASNSHG 112

Query: 129 VILSRFVHVKA 139
            + SR VHV+A
Sbjct: 113 TVHSRDVHVRA 123

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444008|ref|XP_002069676.1| GK11449 [Drosophila willistoni] gi|194165761|gb|EDW80662.1| GK11449 [Drosophila willistoni]

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 40/68 (58%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  + W   + T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG IL
Sbjct: 76  PPVVSWVLRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTIL 135

Query: 132 SRFVHVKA 139
           SR V V+A
Sbjct: 136 SRNVQVQA 143

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110685|ref|XP_001999910.1| GI22819 [Drosophila mojavensis] gi|193916504|gb|EDW15371.1| GI22819 [Drosophila mojavensis]

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 40/68 (58%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  + W   + T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG IL
Sbjct: 72  PPVVSWVMRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTIL 131

Query: 132 SRFVHVKA 139
           SR V V+A
Sbjct: 132 SRNVQVQA 139

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195349089|ref|XP_002041079.1| GM15359 [Drosophila sechellia] gi|194122684|gb|EDW44727.1| GM15359 [Drosophila sechellia]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 56  GNRTRGLELTRQTRYEPSQL-GWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV 114
           GN T G ++T      P  L  W   + ++   V DLR    NG+L FPPF    +R DV
Sbjct: 51  GNDT-GAQVTCTAHGSPPPLVTWVLRDGSLATQVPDLRKISGNGTLHFPPFLAQYYRTDV 109

Query: 115 HSTVYRCRASNEAGVILSRFVHVKA 139
           H   YRCRASNEAG +LSR V V A
Sbjct: 110 HEATYRCRASNEAGTVLSRNVQVHA 134

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055999|ref|XP_001994900.1| GH17490 [Drosophila grimshawi] gi|193892663|gb|EDV91529.1| GH17490 [Drosophila grimshawi]

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 40/65 (61%)

Query: 75  LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
           + W   + T+ + V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR 
Sbjct: 81  VSWVMRDGTLASQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSRN 140

Query: 135 VHVKA 139
           V V+A
Sbjct: 141 VQVQA 145

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238865|ref|XP_972891.2| PREDICTED: similar to AGAP007092-PA [Tribolium castaneum]

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 74  QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
           ++ W  ++ + +  V +LR+   NGSL+FPPFP   +R DVH+ +YRC+  +  G ++SR
Sbjct: 63  EVEWILADGSSVHQVPELRLLFPNGSLVFPPFPNERYRHDVHAALYRCKLKSSLGTVVSR 122

Query: 134 FVHVKA 139
            VHVKA
Sbjct: 123 EVHVKA 128

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391526|ref|XP_002054411.1| GJ22820 [Drosophila virilis] gi|194152497|gb|EDW67931.1| GJ22820 [Drosophila virilis]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 39/65 (60%)

Query: 75  LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
           + W   + T+   V  LR    NG+L FPPF    +R DVH   YRCRASNEAG ILSR 
Sbjct: 77  VSWVMRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCRASNEAGTILSRN 136

Query: 135 VHVKA 139
           V V+A
Sbjct: 137 VQVQA 141

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198451327|ref|XP_001358324.2| GA16078 [Drosophila pseudoobscura pseudoobscura] gi|198131438|gb|EAL27462.2| GA16078 [Drosophila pseudoobscura pseudoobscura]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 40/68 (58%)

Query: 72  PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
           P  + W   + T+   V  LR    NG+L FPPF    +R DVH   YRC+ASNEAG IL
Sbjct: 72  PPVVSWVLRDGTLATQVPGLRKISGNGTLHFPPFLAQYYRTDVHEATYRCKASNEAGTIL 131

Query: 132 SRFVHVKA 139
           SR V V+A
Sbjct: 132 SRNVQVQA 139

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194745280|ref|XP_001955116.1| GF18608 [Drosophila ananassae] gi|190628153|gb|EDV43677.1| GF18608 [Drosophila ananassae]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 56  GNRTRGLELTRQTRYEPSQL-GWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDV 114
           GN T G ++T      P  L  W   + ++   V  LR    NG+L FPPF    +R DV
Sbjct: 47  GNDT-GAQVTCTAHGSPPPLVSWVLRDGSLATQVPGLRKISGNGTLHFPPFLAQYYRTDV 105

Query: 115 HSTVYRCRASNEAGVILSRFVHVKA 139
           H   YRCRASNEAG ILSR V V+A
Sbjct: 106 HEATYRCRASNEAGTILSRNVQVQA 130

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.627	0.044	0.427	2.8e-10
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.565	0.040	0.404	1.8e-08
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.427	0.032	0.447	5.6e-08
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.503	0.036	0.369	1.6e-05
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.503	0.036	0.369	1.6e-05
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.503	0.036	0.369	1.6e-05
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.503	0.036	0.369	1.6e-05
ZFIN|ZDB-GENE-050310-7	2024	dscama "Down syndrome cell adh	0.503	0.036	0.342	0.00019

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 41/96 (42%), Positives = 51/96 (53%)

Query:    48 FRIKSAPG---GNRTRGLELTRQTRYEPSQL-GWRFSNNTVIAYVKDLRIALSNGSLMFP 103
             F ++ AP    GN T G ++T      P  L  W   + ++   V  LR    NG+L FP
Sbjct:    40 FLLEPAPRLLFGNDT-GAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLHFP 98

Query:   104 PFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA 139
             PF    +R DVH   YRCRASNEAG +LSR V V A
Sbjct:    99 PFLAQYYRTDVHEATYRCRASNEAGTVLSRNVQVHA 134

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 34/84 (40%), Positives = 48/84 (57%)

Query:    57 NRTRGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVH 115
             N T G E+  +    P  ++ W  S+ T +  V  LR   S+G L+FPPF    +R +VH
Sbjct:    53 NST-GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111

Query:   116 STVYRCRASNEAGVILSRFVHVKA 139
             + VY C A N+ G I+SR VHV+A
Sbjct:   112 AQVYACLARNQFGSIISRDVHVRA 135

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 30/67 (44%), Positives = 41/67 (61%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P ++ W     T I   +D+   LSNGS+MF PF    +R +VH+TVYRC+  N  G +L
Sbjct:    61 PPEVEW-----TPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVL 115

Query:   132 SRFVHVK 138
             SR VHV+
Sbjct:   116 SREVHVR 122

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct:    39 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFNNLIHDNTYYCTAENPSGKIR 98

Query:   132 SRFVHVKADSRIP 144
             S+ VH+KA  R P
Sbjct:    99 SQDVHIKAVLREP 111

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct:    53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query:   132 SRFVHVKADSRIP 144
             S+ VH+KA  R P
Sbjct:   113 SQDVHIKAVLREP 125

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct:    53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query:   132 SRFVHVKADSRIP 144
             S+ VH+KA  R P
Sbjct:   113 SQDVHIKAVLREP 125

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/73 (36%), Positives = 35/73 (47%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P  L W  +    I  V  +R    NG+L   PFP + F   +H   Y C A N +G I 
Sbjct:    53 PVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIR 112

Query:   132 SRFVHVKADSRIP 144
             S+ VH+KA  R P
Sbjct:   113 SQDVHIKAVLREP 125

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

ZFIN|ZDB-GENE-050310-7 dscama "Down syndrome cell adhesion molecule a" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query:    72 PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL 131
             P+ L W  +       V  +R    NG+L    FP + F   +H   Y C A N +G I 
Sbjct:    53 PATLRWYLATGEESYNVPGIRHVHPNGTLQIFHFPPSSFSKVIHDNTYYCTAENPSGKIR 112

Query:   132 SRFVHVKADSRIP 144
             S+ VH+KA  R P
Sbjct:   113 SQDVHIKAVLREP 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      145       145   0.00071  103 3  11 22  0.42    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.05u 0.10s 14.15t   Elapsed:  00:00:01
  Total cpu time:  14.05u 0.10s 14.15t   Elapsed:  00:00:01
  Start:  Thu Aug 15 15:23:46 2013   End:  Thu Aug 15 15:23:47 2013

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.82
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.82
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.79
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.76
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.75
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.75
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.74
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.74
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.73
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.72
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.72
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.71
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.71
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.71
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.71
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.7
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.7
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.7
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.69
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.69
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.68
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.67
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.67
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.67
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.66
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.66
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.65
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.65
KOG3513|consensus	1051		99.65
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.65
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.64
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.63
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.63
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.63
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.63
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.63
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.63
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.62
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.62
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.62
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.61
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.61
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.61
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.61
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.6
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.6
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.6
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.6
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.6
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.59
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.59
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.59
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.59
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.58
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.58
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.56
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.55
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.55
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.55
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.55
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.54
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.54
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.52
KOG4194|consensus	873		99.52
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.52
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.52
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.51
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.46
KOG3513|consensus	1051		99.46
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.41
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.38
KOG4221|consensus	1381		99.37
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.33
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.32
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.31
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.31
KOG4222|consensus	1281		99.27
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.26
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.25
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.25
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.24
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.24
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.23
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.21
PHA02826	227	IL-1 receptor-like protein; Provisional	99.2
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.18
PHA02785	326	IL-beta-binding protein; Provisional	99.17
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.15
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.14
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.1
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.07
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.07
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.07
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.05
KOG4194|consensus	873		99.04
KOG4222|consensus	1281		99.03
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.02
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.01
smart00409	86	IG Immunoglobulin.	98.93
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.93
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.91
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.89
KOG4221|consensus	1381		98.86
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.86
PHA02785	326	IL-beta-binding protein; Provisional	98.78
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.76
PHA02826	227	IL-1 receptor-like protein; Provisional	98.68
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.62
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.58
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.45
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.4
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.35
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.32
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.32
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.31
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.28
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.26
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.24
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.23
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.22
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.21
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.21
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.2
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.16
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.08
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.07
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.07
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.04
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.03
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.01
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.0
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.99
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.94
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.88
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.81
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.77
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.73
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.73
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.72
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.7
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.68
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.65
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.62
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.57
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.55
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.53
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.5
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.46
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.37
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.35
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.34
smart00407	75	IGc1 Immunoglobulin C-Type.	97.3
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.15
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.12
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.07
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.99
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.93
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.9
smart00406	81	IGv Immunoglobulin V-Type.	96.89
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.83
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.78
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.77
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.73
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.66
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.65
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.55
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.42
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.35
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.27
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.17
PHA02633	63	hypothetical protein; Provisional	95.95
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	95.86
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.8
KOG1480|consensus	909		95.73
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.64
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.6
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.51
PHA03376	221	BARF1; Provisional	95.18
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	94.98
KOG4597|consensus	560		94.95
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.36
KOG3515|consensus	741		94.06
PHA03376	221	BARF1; Provisional	92.25
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	91.8
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	91.44
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	90.96
KOG3515|consensus	741		89.85
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	87.9
PHA03189	348	UL14 tegument protein; Provisional	80.66

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.82  E-value=2.5e-19  Score=121.09  Aligned_cols=87  Identities=21%  Similarity=0.302  Sum_probs=67.9

Q ss_pred             CCEEEEcCCCCC---c---cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPGGN---R---TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~~~---~---~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .|+|+++|.+..   .   ..+.|.|.|.|+|.|+|+|+ +||..+......+....+|+|.|.++..     ..|+|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~-~~g~~l~~~~~~~~~~~~g~L~I~~~~~-----~~D~G~Y   74 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWK-MNGTEIKFAPESRYTLVAGNLVINNPQK-----ARDAGSY   74 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEE-ECCEECccCCCceEEEECCeEEEccCCc-----cCcCEEE
Confidence            378888888721   1   12899999999999999997 5888876444344556689999976432     1289999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy5697         120 RCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|+|.+|++.|+.+.|+
T Consensus        75 ~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          75 QCLAINRCGTVVSREANLR   93 (94)
T ss_pred             EEEEEcCcCcEEEEEEEEe
Confidence            9999999999999988875

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.82  E-value=2.2e-19  Score=121.44  Aligned_cols=87  Identities=24%  Similarity=0.288  Sum_probs=67.9

Q ss_pred             CCEEEEcCCCC-C---ccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPGG-N---RTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~~-~---~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .|+|+++|.+. .   ..|  +.|.|.|.|+|.|+|+|+ +||..+......+....+|+|.|.++..     ..|+|.|
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~-k~g~~l~~~~~~~~~~~~g~L~i~~~~~-----~~D~G~Y   74 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWL-RNGTEIDTESDYRYSLIDGNLIISNPSE-----VKDSGRY   74 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEE-ECCeECccCCCceEEeeCCeEEEccCCc-----cCcCEEE
Confidence            37888888872 1   123  899999999999999998 5888886433334556789999977532     1289999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy5697         120 RCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|+|.+|++.|+.++++
T Consensus        75 ~C~A~N~~G~~~S~~~~l~   93 (94)
T cd05848          75 QCLATNSIGSILSREALLQ   93 (94)
T ss_pred             EEEEEcCCCeEEeccEEEe
Confidence            9999999999999888875

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.79  E-value=1.5e-18  Score=117.43  Aligned_cols=86  Identities=20%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             CCEEEEcCCCC---C-c-cC-eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPGG---N-R-TR-GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~~---~-~-~g-~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +|+|+++|.+.   . . .+ +.|.|.|.|+|.|+|+|++ |+..+.... .+....+|+|.|.++..     ..|+|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~~~~-~~~~~~~g~L~I~~~~~-----~~D~G~Y   73 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDIDLTN-DRYSMVGGNLVINNPDK-----YKDAGRY   73 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEccCCC-CeEEEECCEEEECcCCc-----CCCCEEE
Confidence            48888888872   1 1 12 8999999999999999985 777775322 24456789999976532     1289999


Q ss_pred             EEEEEcCCCceEEEEEEEE
Q psy5697         120 RCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|+|.+|++.|+.++|.
T Consensus        74 ~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          74 VCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EEEEEeCcceEEEccEEEe
Confidence            9999999999999888774

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.76  E-value=5.1e-18  Score=110.90  Aligned_cols=75  Identities=21%  Similarity=0.357  Sum_probs=57.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccC--ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKD--LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.|.|+|+|+|+|++ ||.++...+.  ......+|+|.|..+..++  .+.|+|.|+|.|+|.+|.+.|+.++|+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k-~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~--~~~d~G~Y~C~A~N~~G~~~s~~~~~~   77 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTR-NGTHFDIDKDPKVTMKPNTGTLVINIMNGEK--AEAYEGVYQCTARNERGAAVSNNIVIR   77 (77)
T ss_pred             CEEEeeCcccCCCeEEEEE-CCeECCCcCCCCEEEeCCCceEEEeccccCC--CCCCCEEEEEEEEcCCCeEEeeEEEEC
Confidence            4799999999999999985 7887643222  2233457899998776542  234799999999999999999998874

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.75  E-value=1.1e-17  Score=111.85  Aligned_cols=83  Identities=14%  Similarity=-0.007  Sum_probs=62.9

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.|...+.+ ....  .+.|+|.+.|+|.|.|+|++ ++.++...  .+....+++|.|.++..+      |+|.|+|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~~~~--~~~~~~~~~L~I~~v~~~------D~G~Y~C~   71 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPMPAT--AEISMSGAVLKIFNIQPE------DEGTYECE   71 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCCCCC--CEEecCCCEEEECcCChh------hCEEEEEE
Confidence            5778888887 2223  39999999999999999985 66665432  234445668999988765      89999999


Q ss_pred             EEcCCCce-EEEEEEE
Q psy5697         123 ASNEAGVI-LSRFVHV  137 (145)
Q Consensus       123 A~N~~G~~-~s~~v~v  137 (145)
                      |+|.+|+. .+..+.|
T Consensus        72 A~N~~G~~~~~~~l~V   87 (88)
T cd05851          72 AENIKGKDKHQARVYV   87 (88)
T ss_pred             EEcCCCceEEEEEEEE
Confidence            99999997 4445554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.75  E-value=1.5e-17  Score=108.65  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|+|.|.|+|.|+|+|++ ||..+..  ..+......+|+|.|..+...  ..+.|+|.|+|.|+|.+|++.|+.++|+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~--~~~~d~G~Y~C~A~N~~G~~~s~~~~~~   77 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTR-NGKFFNVAKDPRVSMRRRSGTLVIDFSGGG--RPEDYEGEYQCFARNNLGTALSNKILLQ   77 (77)
T ss_pred             CEEEEeccccCCCEEEEEE-CCEEccCcCCCcEEEeCCCceEEEeccCCC--CCCCCCEEEEEEEEeccceEEEEEEEEC
Confidence            4799999999999999985 8877642  222223346789999865421  1122699999999999999999999874

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.74  E-value=2.4e-17  Score=110.34  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeec----ccCceEEeeCCcEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAY----VKDLRIALSNGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~----~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      +|.|++.|.+ ....|  +.|.|.+.|+|.|.|+|++ ||..+..    ....+....+|++.+..+..... ...|+|.
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~D~G~   78 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK-GRSDEGV   78 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECccccCCCCcceEEecCCcEEEEEeeccCC-CcCcCEE
Confidence            5888888887 23333  9999999999999999985 7887754    11223455677765544322110 2338999


Q ss_pred             EEEEEEcCCCceEEEEEEEE
Q psy5697         119 YRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      |+|.|+|.+|+..++.+.|.
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~   98 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLE   98 (100)
T ss_pred             EEEEEEccccceecceEEEE
Confidence            99999999999888777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.74  E-value=3e-17  Score=109.88  Aligned_cols=83  Identities=25%  Similarity=0.308  Sum_probs=63.6

Q ss_pred             CEEEEcCCCC---C-cc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          47 PFRIKSAPGG---N-RT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        47 P~~i~~p~~~---~-~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      |+|+.+|.+.   . ..  .+.|.|.+.|+|+|+|+|+ +||+.+......+....+|+|.|.++...     .|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~-k~~~~l~~~~~~~~~~~~~~L~i~~~~~~-----~d~G~Y~   75 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWL-MNGTEIDDEPDSRYSLVGGNLVISNPSKA-----KDAGRYQ   75 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEE-ECCEECCCCCCCCEEEECCEEEEecCCcc-----CCCEEEE
Confidence            7888888872   1 12  2899999999999999997 58888743333445567889999765421     2899999


Q ss_pred             EEEEcCCCceEEEEE
Q psy5697         121 CRASNEAGVILSRFV  135 (145)
Q Consensus       121 C~A~N~~G~~~s~~v  135 (145)
                      |+|+|.+|++.|+.+
T Consensus        76 C~a~N~~G~~~S~~~   90 (91)
T cd04967          76 CLASNIVGTVLSREA   90 (91)
T ss_pred             EEEEcCCCEEEeccc
Confidence            999999999988754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.73  E-value=3.6e-17  Score=105.71  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      ++|.|.+.|+|.|+|+|++ |+.++...+ .......+|+|.|.++..+      |+|.|+|.|+|.+|...+..+.+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k-~~~~~~~~~~~~~~~~~~g~L~i~~~~~~------D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFK-DFLPVDTTSNGRIKQLRSGALQIENSEES------DQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECccCCCCCEEEcCCcEEEECCCChh------hCEEEEEEEECCCCceEcccEEEE
Confidence            4799999999999999985 777775322 2334566889999887654      899999999999999877776665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.72  E-value=2.3e-17  Score=107.49  Aligned_cols=75  Identities=23%  Similarity=0.366  Sum_probs=56.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.|.|+|+|+|+|+ +||.++....  .......+|+|.|..+...  ....|+|.|+|.|+|.+|+..|+.++|+
T Consensus         1 i~l~C~~~G~P~P~v~W~-k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~--~~~~d~G~Y~C~A~N~~G~~~s~~~~l~   77 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWT-RNGTHFDPEKDPRVTMKPDSGTLVIDNMNGG--RAEDYEGEYQCYASNELGTAISNEIHLR   77 (77)
T ss_pred             CEEEeeCcccCCCeEEEE-ECCeECCCCCCCCEEEeCCCCEEEEeccCCC--CCcCCCEEEEEEEEcCCCcEEccccEEC
Confidence            479999999999999997 5888775322  2223345789999876431  1123799999999999999999888773

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=4.3e-17  Score=106.24  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=52.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE-EEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFV  135 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s-~~v  135 (145)
                      +.|+|.+.|.|.|+|+|+| ||+.+........+.  .+|  +|.|.++..+      |+|.|+|.|+|.+|++.+ ..+
T Consensus         1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05892           1 VKLECQISAIPPPKIFWKR-NNEMVQYNTDRISLYQDNSGRVTLLIKNVNKK------DAGWYTVSAVNEAGVATCHARL   73 (75)
T ss_pred             CEEEEEEEecCCCeEEEEE-CCEECcCCCCeEEEEEcCCCcEEEEECCCChh------hCEEEEEEEEcCcCeEEEEEEE
Confidence            4799999999999999985 788876432222332  234  7999988765      899999999999999843 344


Q ss_pred             E
Q psy5697         136 H  136 (145)
Q Consensus       136 ~  136 (145)
                      .
T Consensus        74 ~   74 (75)
T cd05892          74 D   74 (75)
T ss_pred             e
Confidence            3

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.72  E-value=4e-17  Score=106.29  Aligned_cols=64  Identities=20%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|+|.+.|.|.|+|+|+| |+.++...........+  |  +|.|..+..+      |+|.|+|.|+|.+|++.
T Consensus         1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~   68 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKK-ENESLTHNTDRVSMHQDNCGYICLLIQGATKE------DAGWYTVSAKNEAGIVS   68 (75)
T ss_pred             CEEEEEEeEecCCEEEEEE-CCEECCCCCCeEEEEEcCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEE
Confidence            4799999999999999985 77777543322233333  3  6999888765      89999999999999983

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.72  E-value=6.8e-17  Score=108.83  Aligned_cols=89  Identities=20%  Similarity=0.358  Sum_probs=66.0

Q ss_pred             EEEEcCCCC-C--ccCeEEEeeEeccCCCEEEEEccCCeEeecccC-ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          48 FRIKSAPGG-N--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        48 ~~i~~p~~~-~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +|+++|.+. .  +..+.|.|.+.|.|+|.|+|+ +||..+..... ......+|+|.|..+..... ...|+|.|+|.|
T Consensus         1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~-k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~-~~~D~G~Y~C~a   78 (95)
T cd05722           1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWK-KDGVLLNLVSDERRQQLPNGSLLITSVVHSKH-NKPDEGFYQCVA   78 (95)
T ss_pred             CcEECCCCeEEcCCCCEEEeeecccCCCCEEEEE-ECCeECccccCcceEEccCCeEEEeeeeccCC-CCCcCEEEEEEE
Confidence            466777762 2  233999999999999999997 48888764332 23456788888876532211 234899999999


Q ss_pred             EcC-CCceEEEEEEEE
Q psy5697         124 SNE-AGVILSRFVHVK  138 (145)
Q Consensus       124 ~N~-~G~~~s~~v~v~  138 (145)
                      +|. +|.+.|+.++|.
T Consensus        79 ~N~~~G~~~s~~~~l~   94 (95)
T cd05722          79 QNDSLGSIVSRTARLT   94 (95)
T ss_pred             ECCccCcEEEeeeEEe
Confidence            999 999999988875

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=1.2e-16  Score=108.94  Aligned_cols=88  Identities=16%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          47 PFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      |.|++.|.+ ....  .+.|.|.+.|.|+|+|+|+ +||.++....+.....  ...+|.|..+..+      |+|.|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~-kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~------D~G~Ytc   73 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWM-KFRKQIQEGEGIKIENTENSSKLTITEGQQE------HCGCYTL   73 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEE-ECCEEecCCCcEEEEecCCeeEEEECCCChh------hCEEEEE
Confidence            678888877 2333  3999999999999999997 5888886443332222  2347999888665      8999999


Q ss_pred             EEEcCCCce-EEEEEEEEecc
Q psy5697         122 RASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      .|+|++|+. .+..+.|...+
T Consensus        74 ~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          74 EVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             EEEcCCCceeEEEEEEEecCC
Confidence            999999998 55567776443

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.71  E-value=8.2e-17  Score=103.22  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|.|+|+|+|++ ||..+.... ...+..+++|.|.++..+      |+|.|+|.|+|.+|++
T Consensus         2 v~l~C~~~G~P~p~v~W~k-~g~~~~~~~-~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~   63 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVK-NGDMVIPSD-YFKIVKEHNLQVLGLVKS------DEGFYQCIAENDVGNV   63 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEE-CCeECCCCC-CEEEEecCCEEEEcCCcc------cCEEEEEEEEcCCCEE
Confidence            6899999999999999985 777664332 335556789999877655      8999999999999997

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.71  E-value=5.7e-17  Score=105.00  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~  136 (145)
                      +.|+|.+.|+|.|+|+|++ |+..+.... ...+..+|+|.|.++..+      |+|.|+|.|+|.+|++. +..+.
T Consensus         4 ~~l~C~~~g~P~p~v~W~k-~~~~l~~~~-r~~~~~~g~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           4 VIIECKPKAAPKPKFSWSK-GTELLVNNS-RISIWDDGSLEILNITKL------DEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             EEEEEecceeCCCEEEEEe-CCEecccCC-CEEEcCCCEEEECcCChh------HCEEEEEEEECCCCceeEEEEEE
Confidence            8999999999999999985 777664332 335567899999988765      89999999999999984 33443

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.71  E-value=1.3e-16  Score=103.36  Aligned_cols=64  Identities=23%  Similarity=0.400  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.+.|.|.|+|+|+ +||.++.... ..+....+|+|.|.++..+      |+|.|+|.|+|.+|++.
T Consensus         4 v~l~C~~~G~P~p~i~W~-k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~   68 (76)
T cd05867           4 ARLDCQVEGIPTPNITWS-INGAPIEGTDPDPRRHVSSGALILTDVQPS------DTAVYQCEARNRHGNLL   68 (76)
T ss_pred             EEEEEEeeEeCCCeEEEE-ECCEECCCCCCCceEEeeCCEEEECCCChh------hCEEEEEEEECCCCeEE
Confidence            799999999999999998 5888876432 2245567889999988655      89999999999999983

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.71  E-value=1.1e-16  Score=104.13  Aligned_cols=70  Identities=27%  Similarity=0.463  Sum_probs=54.0

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.|.|.|.|+|+|+|+|++ ||+++...+.. .....++.|.|.++..+      |+|.|+|.|+|.+|.+ .+..+.|
T Consensus         4 ~~l~C~a~G~P~P~i~W~k-~g~~i~~~~~~~~~~~~~~~l~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           4 GTLICRANGNPKPSISWLT-NGVPIEIAPTDPSRKVDGDTIIFSKVQER------SSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             EEEEEEeeEeCCCeEEEEE-CCEEccccCCCceEEecCCEEEECCCCHh------hCEEEEEEEEcCCCEEEEEEEEEe
Confidence            7899999999999999985 88888643322 23344568888877654      8999999999999998 4445554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.70  E-value=2.6e-16  Score=104.46  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      ||.++..|.+ ....  .+.|.|.+.|+|.|+|+|++ ++..+...  ......+++|.|.++..+      |+|.|+|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k-~~~~~~~~--~~~~~~~~~L~i~~v~~~------D~G~Y~C~   71 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRK-VDGSMPSS--AEISMSGAVLKIPNIQFE------DEGTYECE   71 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEE-CCCcCCCc--cEEEEeCCEEEECCCCcc------cCEEEEEE
Confidence            4667777776 2223  39999999999999999986 44433221  223356789999988765      89999999


Q ss_pred             EEcCCCce-EEEEEEE
Q psy5697         123 ASNEAGVI-LSRFVHV  137 (145)
Q Consensus       123 A~N~~G~~-~s~~v~v  137 (145)
                      |+|.+|.. .+..+.|
T Consensus        72 a~N~~G~~~~~~~l~V   87 (88)
T cd04968          72 AENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEECCCcEEEEEEEEE
Confidence            99999997 4445544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.70  E-value=1.2e-16  Score=104.25  Aligned_cols=72  Identities=25%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeec------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAY------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF  134 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~  134 (145)
                      ++|.|.|.|+|.|.|+|++.++.....      ..+...+..+|+|.|.++..+      |+|.|+|.|+|.+|...++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~s~~   74 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEE------DSGYYLCKVSNDVGADASKS   74 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcc------cCEEEEEEEEeCCCCCCceE
Confidence            479999999999999998755432110      112233457899999887655      89999999999999998888


Q ss_pred             EEEE
Q psy5697         135 VHVK  138 (145)
Q Consensus       135 v~v~  138 (145)
                      +.+.
T Consensus        75 ~~l~   78 (79)
T cd05734          75 MVLT   78 (79)
T ss_pred             EEEe
Confidence            7765

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.70  E-value=8.7e-17  Score=103.70  Aligned_cols=62  Identities=19%  Similarity=0.308  Sum_probs=52.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|.|+|+|++ ||..+.... ...+..+|+|.|.++..+      |+|.|+|.|+|.+|++
T Consensus         5 v~l~C~~~g~P~p~i~W~k-~g~~~~~~~-~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~   66 (74)
T cd05745           5 VDFLCEAQGYPQPVIAWTK-GGSQLSVDR-RHLVLSSGTLRISRVALH------DQGQYECQAVNIVGSQ   66 (74)
T ss_pred             EEEEeECCEecCCEEEEEE-CCEECCCCC-CeEEccCCeEEEeeCCHH------hCEEEEEEEEeCCCce
Confidence            8999999999999999985 788775432 234567889999988765      8999999999999997

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.69  E-value=1.1e-16  Score=105.87  Aligned_cols=76  Identities=18%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             EEEcCCC-CC--ccCeEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          49 RIKSAPG-GN--RTRGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        49 ~i~~p~~-~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      |+++|++ .+  +..+.|.|.|.|+|.| +|+|+ +||.++...    .....++|.|..+.        |+|.|+|.|+
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~-k~g~~l~~~----~~~~~s~L~i~~~~--------d~g~Y~C~A~   67 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWW-QGGSPLGDP----PAPSPSVLNVPGLN--------ETSKFSCEAH   67 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEE-ECCEECCCC----CCCCCCEEEEcccc--------CCeEEEEEEE
Confidence            3456666 22  2339999999999999 79997 588887531    11234678886542        7899999999


Q ss_pred             cCCCceEEEEEEE
Q psy5697         125 NEAGVILSRFVHV  137 (145)
Q Consensus       125 N~~G~~~s~~v~v  137 (145)
                      |.+|...++.++|
T Consensus        68 N~~G~~~s~~a~~   80 (81)
T cd05749          68 NAKGVTTSRTGTV   80 (81)
T ss_pred             eccCcEEeeeEEe
Confidence            9999999888776

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.69  E-value=2.3e-16  Score=102.73  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=56.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v~  138 (145)
                      ++|.|.+.|.|.|+|+|+| ||.++........ ...+++|.|.++.++      |+|.|+|.|+|.+|+.. ++.++|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFR-DGTPLSDGQGNYSVSSKERTLTLRSAGPD------DSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEE-CCEECCCCCccEEEeCCCCEEEEeeCCcc------cCEEEEEEEEeCCCeEeeCceEEEE
Confidence            4799999999999999985 8888754332222 233568999888765      89999999999999984 5677776


Q ss_pred             ec
Q psy5697         139 AD  140 (145)
Q Consensus       139 ~~  140 (145)
                      ..
T Consensus        74 v~   75 (77)
T cd05760          74 II   75 (77)
T ss_pred             Ee
Confidence            43

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.68  E-value=4.2e-16  Score=101.17  Aligned_cols=65  Identities=26%  Similarity=0.359  Sum_probs=50.0

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s  132 (145)
                      +.|+|.+.|+|.|+|+|++ ||..+........+..+  |  +|.|..+..+      |+|.|+|.|+|.+|+..+
T Consensus         1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~   69 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKK-NNEMLTYNTDRISLYQDNCGRICLLIQNANKE------DAGWYTVSAVNEAGVVSC   69 (75)
T ss_pred             CEEEEEEeecCCCeEEEEE-CCEECCCCCCcEEEEEcCCCeEEEEECCCCcc------cCEEEEEEEEcCCCcEEE
Confidence            4799999999999999985 78887643322233322  3  6999888665      899999999999999843

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.67  E-value=2.8e-16  Score=100.74  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|+|.|.|+|++ ++..+... .......+++|.|.++..+      |+|.|+|.|+|.+|..
T Consensus         1 ~~L~C~~~G~P~P~v~W~k-~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~   62 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDR-IDGPLSPN-RTKKLNNNKTLQLDNVLES------DDGEYVCTAENSEGSA   62 (71)
T ss_pred             CEEEEEeeEecCCeEEEEE-CCcCCCCC-ceeEEcCCCEEEEcccCHH------hCEEEEEEEEcCCCeE
Confidence            4799999999999999986 55555332 1233456779999988755      8999999999999997

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.67  E-value=4e-16  Score=103.31  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             EEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          49 RIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        49 ~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      |++.|.+ ...  ..+.|.|.+.|+|.|.++|+ +||.++....  +....++.|.|.++..+      |+|.|+|.|.|
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~-k~g~~~~~~~--~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N   72 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWL-KNGQPLASEN--RIEVEAGDLRITKLSLS------DSGMYQCVAEN   72 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEE-ECCEECCCCC--eEEEeCCEEEEeeCCHH------HCEEEEEEEEC
Confidence            4556665 222  33999999999999999997 4888775432  34457889999988655      89999999999


Q ss_pred             CCCce
Q psy5697         126 EAGVI  130 (145)
Q Consensus       126 ~~G~~  130 (145)
                      .+|.+
T Consensus        73 ~~G~~   77 (85)
T cd05728          73 KHGTI   77 (85)
T ss_pred             CCCeE
Confidence            99997

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.67  E-value=6.9e-16  Score=103.40  Aligned_cols=78  Identities=8%  Similarity=0.013  Sum_probs=59.7

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee---CCcEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS---NGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~---~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      .||.|++.|.+ ....  .+.|+|.+.|+|.|++.|++ +|..+....+. .+..   .++|.|.++..+      |+|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~~~~~-~~~~~~~~~~L~i~~~~~~------D~G~   73 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVSSQRH-QITSTEYKSTFEISKVQMS------DEGN   73 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCCCCcE-EEEEcCCeeEEEECCCCcc------cCEe
Confidence            47888888877 2333  38999999999999999985 77776543322 2222   358999887655      8999


Q ss_pred             EEEEEEcCCCce
Q psy5697         119 YRCRASNEAGVI  130 (145)
Q Consensus       119 Y~C~A~N~~G~~  130 (145)
                      |+|.|+|.+|+.
T Consensus        74 Y~C~a~N~~G~~   85 (92)
T cd05747          74 YTVVVENSEGKQ   85 (92)
T ss_pred             EEEEEEcCCCCE
Confidence            999999999986

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=4.9e-16  Score=99.00  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|.|.|+|++ ||..+.... ...+..+|+|.|.++..+      |+|.|+|.|+|.+|..
T Consensus         1 v~L~C~~~g~P~p~i~W~k-~g~~~~~~~-~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~   62 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNK-DGVQVTESG-KFHISPEGYLAIRDVGVA------DQGRYECVARNTIGYA   62 (69)
T ss_pred             CEeEecceEeCCCEEEEEE-CCEECCCCC-CEEECCCCEEEECcCChh------hCEEEEEEEECCCCcE
Confidence            4799999999999999984 888775432 334556889999988755      8999999999999997

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.66  E-value=7.1e-16  Score=99.47  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeE-eecccCce-EE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTV-IAYVKDLR-IA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~-i~~~~~~~-~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      +.|.|.+.|+|.|+|+|++ +|.. +......+ .+ ..++.|.|.++..+      |+|.|+|.|+|.+|++ .+..+.
T Consensus         1 a~l~C~~~G~P~P~v~W~k-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQK-DGGTDFPAARERRMHVMPEDDVFFIVDVKIE------DTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEe-CCCccCCcccccceEEecCCCEEEEeeCCcc------cCEEEEEEEEcCCCEEEeeEEEE
Confidence            4799999999999999986 5542 22111111 22 34568999888665      8999999999999997 333444


Q ss_pred             E
Q psy5697         137 V  137 (145)
Q Consensus       137 v  137 (145)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            3

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.65  E-value=2.6e-15  Score=102.18  Aligned_cols=72  Identities=17%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEE
Q psy5697          60 RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF  134 (145)
Q Consensus        60 g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~  134 (145)
                      .+.|.|.+.|+|. |+|+|++.||..+........+..+    ++|.|..+..+      |+|.|+|.|+|.+|....+.
T Consensus        17 ~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~~g~~~~s   90 (96)
T cd05865          17 SKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANID------DAGIYKCVVSNEDEGESEAT   90 (96)
T ss_pred             eEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChh------hCEEEEEEEEcCCCCcEEEE
Confidence            4999999999995 7999986688766432222222222    58999988766      89999999999984433444


Q ss_pred             EEE
Q psy5697         135 VHV  137 (145)
Q Consensus       135 v~v  137 (145)
                      +.+
T Consensus        91 ~~l   93 (96)
T cd05865          91 VNV   93 (96)
T ss_pred             EEE
Confidence            444

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=1.1e-15  Score=98.29  Aligned_cols=70  Identities=29%  Similarity=0.474  Sum_probs=54.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v  137 (145)
                      +.|.|.+.|+|.|+|+|+ +||..+...... .....+++|.|.++..+      |+|.|+|.|+|.+|++. +..+.|
T Consensus         4 ~~l~C~~~g~P~p~i~W~-~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           4 GRLDCEAEGIPQPTITWR-LNGVPIEELPPDPRRRVDGGTLILSNVQPN------DTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             EEEEEEceeeCCCEEEEE-ECCEECCCCCCcceEEccCCEEEECCCChh------hCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999997 488877643322 34556789999988655      89999999999999983 334443

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.65  E-value=2.3e-15  Score=101.31  Aligned_cols=70  Identities=19%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      +.|.|.|.|. .|.|+|+ +||..+... +......+++|.|.++..+      |+|.|+|.|.|.+|...|..+.|..
T Consensus        21 v~l~C~a~g~-~p~i~W~-kng~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          21 VTLTCEAEGQ-ATYIWWV-NNGSLLVPP-RLQLSNDNRTLTFNNVTRS------DTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEEEEeCCC-CCEEEEE-ECCEECCCC-CEEEeCCCCEEEECcCChh------hCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            9999999999 9999997 477776432 2222234569999988765      8999999999999999998887753

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>KOG3513|consensus

Probab=99.65  E-value=8.2e-16  Score=138.30  Aligned_cols=116  Identities=19%  Similarity=0.257  Sum_probs=91.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|=|...+.....        ..+.......+|.|++.+.+. .  .+.++|+|.|.|.|.|+|+|+ +||.++.
T Consensus       303 ~~D~G~Y~C~AeN~~G~~--------~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~Wl-kNg~pl~  373 (1051)
T KOG3513|consen  303 YEDAGEYECIAENSRGSA--------THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWL-KNGEPLE  373 (1051)
T ss_pred             cCCCeEEEEEEecccccc--------eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEe-eCCeecC
Confidence            568888888886655433        233344557789999999983 2  334999999999999999997 6999987


Q ss_pred             ccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy5697          87 YVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus        87 ~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      ... ..+..+.+|+|.|.++..+      |+|+|||.|+|.+|.+ .++.+.|.+.
T Consensus       374 ~~~r~~~~~i~~g~L~is~v~~~------dsg~YQC~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  374 PAERDPRYKIDDGTLIISNVQES------DSGVYQCIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             ccCCCcceEEeCCEEEEEecccc------cCeEEEeeeecccceEeeeeEEEEEcc
Confidence            432 2347788999999998765      8999999999999999 6778999865

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.65  E-value=1.9e-15  Score=101.56  Aligned_cols=71  Identities=14%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|.|.|.|+|+ +||..+...........++ +|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus        21 v~L~C~~~g~P~p~v~W~-k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          21 VTLACDADGFPEPTMTWT-KDGEPIESGEEKYSFNEDGSEMTILDVDKL------DEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             EEEEEeccEeCCCEEEEE-ECCEECcCCCCEEEEeCCCCEEEECCCChh------hCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            999999999999999997 5888775432222333344 6999887654      8999999999999997 33344443

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=2.1e-15  Score=98.95  Aligned_cols=72  Identities=14%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+.|.|.+ .|.|.|+|+|++ ||..+...........+|+|.|.++..+      |+|.|+|.|+|.+|...++.+.+.
T Consensus        13 ~v~l~C~~~~g~p~p~i~W~k-~g~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~~~~l~   85 (86)
T cd05724          13 MAVLECSPPRGHPEPTVSWRK-DGQPLNLDNERVRIVDDGNLLIAEARKS------DEGTYKCVATNMVGERESAAARLS   85 (86)
T ss_pred             CEEEEEECCCCCCCCEEEEEE-CCEECCCCCCCEEEccCCEEEEeECCcc------cCEEEEEEEEeccCceeeeeEEEE
Confidence            39999998 899999999984 7887764333334556789999988765      899999999999999988776654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=1.8e-15  Score=97.21  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=54.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      +.|.|.+.|+|.|+++|++ ++..+.... ......+|+|.|.++..+      |+|.|+|.|.|.+|+. .+..+.
T Consensus         4 v~L~C~~~g~P~p~v~W~k-~~~~~~~~~-~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           4 VIIECKPKAAPKPTISWSK-GTELLTNSS-RICIWPDGSLEILNVTKS------DEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             EEEEEeeeEcCCCEEEEEE-CCEEcccCC-CEEECCCCeEEEccCChh------HCEEEEEEEECCCCceEEEEEEE
Confidence            8999999999999999985 777765433 235567789999988765      8999999999999997 333443

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.64  E-value=2e-15  Score=96.91  Aligned_cols=63  Identities=17%  Similarity=0.235  Sum_probs=52.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|.|.|.++|++.|+..+.... ......+|+|.|..+..+      |+|.|.|+|+|+.|..
T Consensus         4 ~~l~C~~~g~P~p~v~W~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~   66 (74)
T cd05764           4 ATLRCKARGDPEPAIHWISPDGKLISNSS-RTLVYDNGTLDILITTVK------DTGSFTCIASNAAGEA   66 (74)
T ss_pred             EEEEEEccCcCCCEEEEEeCCCEEecCCC-eEEEecCCEEEEEECChh------hCEEEEEEEECCCCeE
Confidence            78999999999999999877887765432 335567889999877654      8999999999999986

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.63  E-value=1.5e-15  Score=97.08  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.|.|.+.|+|+|+++|+| ||.++...      ...++|.|.++..+      |+|.|+|+|+|++|.. .+..++|
T Consensus         1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~~------~~~~~L~i~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYK-DGKLISGK------HSQHSLQIKDVTEA------SAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEE-CCEECccc------CCcCEEEECCCCHH------HCEEEEEEEEECCccEEEEEEEEE
Confidence            4689999999999999985 88887521      13568999888665      8999999999999986 3334444

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=1.8e-15  Score=96.02  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|.|+|.++|++ ++..+..  .......+++|.|.++..+      |+|.|.|.|+|.+|..
T Consensus         1 v~l~C~~~g~P~p~v~W~k-~~~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~   61 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRK-EDGELPK--GRAEILDDKSLKIRNVTAG------DEGSYTCEAENMVGKI   61 (69)
T ss_pred             CEEEEECccCCCCEEEEEE-CCccCCC--CcEEEeeCCEEEECcCChh------HCEEEEEEEEcCCCcE
Confidence            4799999999999999986 5555432  2234456789999988765      8999999999999997

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.63  E-value=3.3e-15  Score=96.00  Aligned_cols=63  Identities=14%  Similarity=0.145  Sum_probs=48.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|+|.|+++|+ +||..+....+......  .++|.|.++..+      |+|.|+|.|+|.+|+.
T Consensus         2 ~~l~c~~~G~P~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~   66 (74)
T cd05748           2 VRLEVPISGRPTPTVTWS-KDGKPLKLSGRVQIETTASSTSLVIKNAERS------DSGKYTLTLKNPAGEK   66 (74)
T ss_pred             EEEEeeEeeeCCCeEEEE-ECCEEcCCCCeEEEEECCCeEEEEECCCCcC------cCEEEEEEEECCCccE
Confidence            679999999999999997 47888754332222222  347999888655      8999999999999996

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.63  E-value=3.1e-15  Score=100.29  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|.|+|+|++ +|.++....+.+....++   +|.|.++..+      |+|.|+|.|+|.+|+.
T Consensus        19 v~L~C~v~G~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~   84 (92)
T cd05737          19 LNLTCTVFGDPDPEVSWLK-NDQALALSDHYNVKVEQGKYASLTIKGVSSE------DSGKYGIVVKNKYGGE   84 (92)
T ss_pred             EEEEEEEEecCCCeEEEEE-CCEECccCCCEEEEEcCCCEEEEEEccCChh------hCEEEEEEEEECCCcc
Confidence            8999999999999999985 788876443333333322   7999887655      8999999999999997

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.63  E-value=2.4e-15  Score=96.55  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.|.|.+.|+|+|+++|++ ||.++...  .+....+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~~--~~~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYK-NGKLISEK--NRTKKSGHSLTIKDVTEE------DAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCCC--CEEEcCCCEEEECcCCHH------HCEEEEEEEEcCCccEEEEEEEEE
Confidence            3689999999999999985 88887643  334556679999988665      8999999999999986 4445544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.63  E-value=1.8e-15  Score=97.34  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|+|+|+++|+| ||+++...  . ....+++|.|..+..+      |+|.|+|.|+|.+|+. .+..+.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~~--~-~~~~~~~L~I~~v~~~------D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYK-NGQLIVLN--H-TFKRGVHLTIYEVTEK------DAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEE-CCEECCCC--C-EEccCCEEEECcCCHH------HCEEEEEEEEECCCceeeEEEEEEE
Confidence            3689999999999999985 88887542  1 2334558999887655      8999999999999987 45555553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.63  E-value=2.7e-15  Score=100.09  Aligned_cols=64  Identities=11%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceE--EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~--~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.|.|+|.|+|+|++ ||..+........  ....++|.|.++..+      |.|.|+|.|+|.+|+.
T Consensus        17 ~v~l~C~~~G~P~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~g~Y~C~A~N~~G~~   82 (90)
T cd04972          17 TATIRCTAEGSPLPKVEWII-AGLIVIQTRTDTLETTVDIYNLQLSNITSE------TQTTVTCTAENPVGQA   82 (90)
T ss_pred             cEEEEEEEEEcCCCeEEEEE-CCEEccCCccEEEEecCCEEEEEEecCCcc------cCEEEEEEEECCCCce
Confidence            39999999999999999985 7776643222111  123348999888655      7999999999999997

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.62  E-value=6e-15  Score=98.51  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      +.|.|.+.|.|+|.|+|+ ++++.+........+.  ..     .+|.|.++..+      |+|.|.|.|+|++|+. .+
T Consensus         4 ~~l~C~~~g~p~~~i~W~-k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~------D~G~YtC~A~N~~G~~~~~   76 (88)
T cd05735           4 KEMSCTAHGEKPIIVRWE-KEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVRE------DSGFFSCHAINSYGEDRGI   76 (88)
T ss_pred             EEEEEEEECCCCCEEEEe-eCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcc------cCEEEEEEEEcCCCcceEE
Confidence            799999999999999997 5777775332222221  11     36888877655      8999999999999998 55


Q ss_pred             EEEEEEeccC
Q psy5697         133 RFVHVKADSR  142 (145)
Q Consensus       133 ~~v~v~~~~~  142 (145)
                      ..+.|...+.
T Consensus        77 ~~L~V~~~P~   86 (88)
T cd05735          77 IQLTVQEPPD   86 (88)
T ss_pred             EEEEEeCCCC
Confidence            5777775443

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.62  E-value=6.6e-15  Score=99.52  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                      .+.|.|.+.|+|. .++|++.+|.++....+ ..+..+|   +|.|..+..+      |+|.|+|.|+|.+|....+.+.
T Consensus        17 ~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r-~~~~~~g~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~~i~   88 (92)
T cd05866          17 SKFFTCTAIGEPE-SIDWYNPQGEKIVSSQR-VVVQKEGVRSRLTIYNANIE------DAGIYRCQATDAKGQTQEATVV   88 (92)
T ss_pred             eEEEEEEEEEeCC-eEEEEeCCCeEecCCCC-EEEEeCCCeeEEEEecCChH------HCEEEEEEEEcCCCcEEEEEEE
Confidence            3999999999998 99999767877754332 3444455   8999988665      8999999999999998777776


Q ss_pred             EE
Q psy5697         137 VK  138 (145)
Q Consensus       137 v~  138 (145)
                      +.
T Consensus        89 l~   90 (92)
T cd05866          89 LE   90 (92)
T ss_pred             EE
Confidence            65

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.62  E-value=5.5e-15  Score=100.17  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEcc-CCeEeecc---cCce-EEe---eCCcEEEcCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFS-NNTVIAYV---KDLR-IAL---SNGSLMFPPFPETGFRPDV  114 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~-dg~~i~~~---~~~~-~~~---~~GsL~i~~~~~~~~~~~~  114 (145)
                      +|.+++ +++ ....|  +.|.|.+.|+|.|.|+|++. +|..+...   ...+ .+.   .+++|.|.++..+      
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~------   74 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLS------   74 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcC------
Confidence            577655 455 33333  99999999999999999864 45444311   1112 222   2358999988765      


Q ss_pred             CCeEEEEEEEcCCCce
Q psy5697         115 HSTVYRCRASNEAGVI  130 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~  130 (145)
                      |+|.|+|.|+|.+|..
T Consensus        75 D~G~Y~C~A~N~~G~~   90 (98)
T cd05870          75 DSGRYDCEAASRIGGH   90 (98)
T ss_pred             CCEEEEEEEeccCCcc
Confidence            8999999999999986

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.61  E-value=4.7e-15  Score=101.84  Aligned_cols=71  Identities=15%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEee-------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALS-------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~-------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|.+.| .|+|+|+|+| ||.++...........       .++|.|..+..+      |+|.|+|.|+|+.|+. .
T Consensus        21 v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Ytc~A~N~~G~~~~   93 (101)
T cd04975          21 LNLVVEVEAYPPPPHINWTY-DNRTLTNKLTEIVTSENESEYRYVSELKLVRLKES------EAGTYTFLASNSDASKSL   93 (101)
T ss_pred             EEEEEEEEecCCCCccEEEe-CCeeCCCCcceeEEEeccCcceEEEEEEEeecCHh------hCeeEEEEEECCCccEEE
Confidence            899999999 9999999984 9998874332222222       257999888665      8999999999999987 4


Q ss_pred             EEEEEEE
Q psy5697         132 SRFVHVK  138 (145)
Q Consensus       132 s~~v~v~  138 (145)
                      +..+.|.
T Consensus        94 t~~L~V~  100 (101)
T cd04975          94 TFELYVN  100 (101)
T ss_pred             EEEEEEE
Confidence            4455553

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=6.3e-15  Score=98.35  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      +.|.|.+.|+|.|+|.|++ +|..+.       .......+..+|+|.|.++..+      |+|.|+|.|.|.+|++ .+
T Consensus         4 v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           4 VTFQCEATGNPQPAIFWQK-EGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRS------DVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             EEEEEECCccCCCEEEEEe-CCCcceeecccCCCCCCeEEECCCCeEEEeeCChh------hCEEEEEEEEcCCCceEEE
Confidence            8999999999999999986 554321       0111223455789999988765      8999999999999998 44


Q ss_pred             EEEEEE
Q psy5697         133 RFVHVK  138 (145)
Q Consensus       133 ~~v~v~  138 (145)
                      ..+.|.
T Consensus        77 ~~l~V~   82 (90)
T cd05726          77 AYLEVT   82 (90)
T ss_pred             EEEEEe
Confidence            566666

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.61  E-value=5.3e-15  Score=98.25  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=55.1

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeeccc---CceEE---eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVK---DLRIA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~---~~~~~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|.|.|+|.|  +|+|+ +||+++....   ...+.   ...|+|.|.+++.+      |+|.|+|.|+|.+|+. .
T Consensus         3 ~~L~C~a~g~P~p~~~v~W~-~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           3 LTLQCHASHDPTMDLTFTWS-LDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS------HAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             EEEEEEEecCCCCCeEEEEE-ECCeEccccCCCCcEEEEEecceEeEEEEccCChh------hCeEEEEEEecCCCCEEE
Confidence            7899999999998  68997 4888875322   11111   13579999988765      8999999999999998 5


Q ss_pred             EEEEEEEe
Q psy5697         132 SRFVHVKA  139 (145)
Q Consensus       132 s~~v~v~~  139 (145)
                      +..+.|..
T Consensus        76 ~~~L~V~~   83 (85)
T cd05854          76 SATLVVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            56777764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=3.5e-15  Score=94.57  Aligned_cols=62  Identities=19%  Similarity=0.197  Sum_probs=47.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|.|.|+++|++ ++..+... .......+++|.|.++..+      |+|.|+|.|+|.+|..
T Consensus         1 v~l~C~~~g~P~p~v~W~k-~~~~~~~~-~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~   62 (71)
T cd05731           1 LLLECIAEGLPTPEISWIK-IGGELPAD-RTKFENFNKTLKIDNVSEE------DDGEYRCTASNSLGSA   62 (71)
T ss_pred             CEEEEEeeEecCCeEEEEE-CCeECCCC-ceeEecCCCEEEECCCCHH------HCEEEEEEEEeCCceE
Confidence            4799999999999999986 55555322 1222334568999888655      8999999999999987

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.60  E-value=1e-14  Score=98.64  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             CCEEEEcCCCCCc---cCeEEEeeEeccCCCEEEEEccCCeEeeccc----CceEEee---CCcEEEcCCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPGGNR---TRGLELTRQTRYEPSQLGWRFSNNTVIAYVK----DLRIALS---NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        46 ~P~~i~~p~~~~~---~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~---~GsL~i~~~~~~~~~~~~d  115 (145)
                      +|.|...+.....   ..+.|.|.+.|.|.|+|+|++ ++..+....    +...+..   .++|.|.++..+      |
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~------D   74 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRT-STRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYT------D   74 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccccCCccccCccEEEEcCccEEEEEEecCccC------c
Confidence            5666666655322   339999999999999999985 666654211    1111212   247999887655      8


Q ss_pred             CeEEEEEEEcCCCce
Q psy5697         116 STVYRCRASNEAGVI  130 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~  130 (145)
                      +|.|+|.|+|.+|..
T Consensus        75 ~G~Y~C~A~N~~G~~   89 (97)
T cd05869          75 AGEYLCTASNTIGQD   89 (97)
T ss_pred             CEEEEEEEecCCCCe
Confidence            999999999999997

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=7.2e-15  Score=96.99  Aligned_cols=62  Identities=23%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             EEeeEeccCCCEEEEEccCCeEeecccCceEE---------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          63 ELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA---------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        63 L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~---------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      ++|.+.|+|+|+|+|+| ||.++.........         ...|+|.|.++..+      |+|.|+|+|+|.+|++.
T Consensus         3 i~~~v~G~P~P~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~YtC~A~N~~G~~~   73 (81)
T cd04971           3 IPFTVRGNPKPTLTWYH-NGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHV------NNGNYTLVASNEYGQDS   73 (81)
T ss_pred             EEEEeEeeCCCcEEEEE-CCEECcCCCceeEEEEeecccccccEEEEEECCCCcc------cCeEEEEEEEeCCCCee
Confidence            68999999999999985 88888654322111         12457999887654      89999999999999973

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.60  E-value=6.5e-15  Score=98.52  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             eEEEeeEeccCCCEEEEEcc---CCeEeecc--cCceE---------EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPSQLGWRFS---NNTVIAYV--KDLRI---------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~---dg~~i~~~--~~~~~---------~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|+|.|.|.|.|+|+|+|.   +|..+...  +....         ....+.|.|.++..+      |+|.|+|.|+|.
T Consensus         4 v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~   77 (90)
T cd04974           4 VEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFD------DAGEYTCLAGNS   77 (90)
T ss_pred             EEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccc------cCcEEEEEeecc
Confidence            89999999999999999864   23333211  11000         112357899887765      899999999999


Q ss_pred             CCce-EEEEEEE
Q psy5697         127 AGVI-LSRFVHV  137 (145)
Q Consensus       127 ~G~~-~s~~v~v  137 (145)
                      +|+. .+..+.|
T Consensus        78 ~G~~~~sa~L~V   89 (90)
T cd04974          78 IGPSHHSAWLTV   89 (90)
T ss_pred             cCcccCCEEEEe
Confidence            9997 4445544

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.60  E-value=6.8e-15  Score=97.09  Aligned_cols=72  Identities=24%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccC-c---e--EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKD-L---R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~-~---~--~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|.|.|.|.|  +++|+ +||+.+..... .   +  ....+|+|.|.+++.+      |+|.|+|.|+|.+|.. .
T Consensus         3 ~~L~C~~~g~P~p~i~~~W~-~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           3 ITLQCHASHDPTLDLTFTWS-FNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLK------HAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             EEEEEEEecCCCCCeEEEEE-ECCeEeeccCCCccEEEEecccccceEEEccCCHH------hCeeeEEEEecCCCcEEE
Confidence            7899999999998  67997 58888763221 1   1  1235679999988765      8999999999999987 5


Q ss_pred             EEEEEEEe
Q psy5697         132 SRFVHVKA  139 (145)
Q Consensus       132 s~~v~v~~  139 (145)
                      +..+.|..
T Consensus        76 ~~~l~V~~   83 (85)
T cd04970          76 SADLIVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            55666664

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.60  E-value=7.5e-15  Score=93.97  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.|.|+|.|+|+|++ +|.++...  .+....++.|.|.++.        |+|.|+|.|+|.+|++
T Consensus         4 v~L~C~a~G~P~P~v~W~k-~g~~l~~~--~~~~~~~~~L~i~~~~--------d~G~Y~C~A~N~~G~~   62 (69)
T cd05739           4 VNLTCVAVGAPMPYVKWMK-GGEELTKE--DEMPVGRNVLELTNIY--------ESANYTCVAISSLGMI   62 (69)
T ss_pred             EEEEEEeeecCCCEEEEEE-CCEECCCc--cceecCccEEEEeccc--------cCeeEEEEEEeCCCEE
Confidence            8999999999999999985 77776432  2233344578887642        6999999999999997

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.59  E-value=1.3e-14  Score=96.49  Aligned_cols=63  Identities=10%  Similarity=0.014  Sum_probs=49.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|+|.|+|++ ||.++....+...+.   ..++|.|..+..+      |+|.|.|.|+|++|+.
T Consensus        13 v~l~c~~~G~P~P~v~W~k-~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~N~~G~~   78 (86)
T cd05894          13 LRLDVPISGEPAPTVTWSR-GDKAFTETEGRVRVESYKDLSSFVIEGAERE------DEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEeeEeecCCCeEEEEE-CCEECccCCCeEEEEEcCCeEEEEECCCccC------cCEEEEEEEEeCCCcE
Confidence            8999999999999999974 788876432222222   1247999887665      8999999999999996

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.59  E-value=1.3e-14  Score=95.78  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             CEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          47 PFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      |.|++.|.+ ....  .+.|.|.+.|.|.|+++|++ ||..+....+.......  .+|.|.++..+      |+|.|+|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C   73 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQRYQIESDGGSSSLTIKNVTRE------DAGTYTC   73 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSSEEEEEETTEEEEEESSESGG------GSEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeeeeeeecccceeEEccCCCChh------hCEEEEE
Confidence            677888876 2233  39999999999999999985 78888765444333333  38999988765      8999999


Q ss_pred             EEEcCCCce-EEEEEE
Q psy5697         122 RASNEAGVI-LSRFVH  136 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~  136 (145)
                      .|+|..|.. .+..+.
T Consensus        74 ~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   74 VASNSSGEATASVNLT   89 (90)
T ss_dssp             EEEETTEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEE
Confidence            999999987 333443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.59  E-value=1.3e-14  Score=99.53  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEE--------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA--------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~--------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-  130 (145)
                      .+.|.|.+.|+|+|+|+|+ +||.++.........        ....+|.|..+..+      |+|.|+|.|+|++|+. 
T Consensus        20 ~~~l~~~v~g~P~P~v~W~-kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------D~G~Ytc~A~N~~g~~~   92 (101)
T cd05859          20 VKEFVVEVEAYPPPQIRWL-KDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEE------DSGLYTALAQNEDAVKS   92 (101)
T ss_pred             cEEEEEEEEEeCCCceEEE-ECCEECcCCcceEEeccccccceeeccEEEEeeCCHH------HCEEEEEEEEcCCceEE
Confidence            3899999999999999998 488887643321111        11357999888765      8999999999999997 


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      .+..+.|.
T Consensus        93 ~t~~l~V~  100 (101)
T cd05859          93 YTFALQIQ  100 (101)
T ss_pred             EEEEEEEE
Confidence            55566654

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.59  E-value=7.5e-15  Score=96.77  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=47.8

Q ss_pred             EEeeEeccCCCEEEEEccCCeEeecccCceE---E----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          63 ELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI---A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        63 L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~---~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.+.|+|+|+|+|+ +||+++.+.+....   .    ...++|.|.++..+      |+|.|.|+|+|.+|++
T Consensus         3 i~~~v~G~P~Pti~W~-kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~   70 (79)
T cd05855           3 IPFTVKGNPKPTLQWF-HEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHL------NNGIYTLVAKNEYGED   70 (79)
T ss_pred             EEEEEeEeCCCceEEE-ECCEECCCCcceeeeeEeecccceEEEEEECCCCcc------cCEEEEEEEEcCCccc
Confidence            6899999999999998 58898865432211   1    12358999887665      8999999999999987

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.58  E-value=1.4e-14  Score=95.06  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|+|+|+|++ ||..+......   ......++|.|.++..+      |+|.|+|.|+|.+|++
T Consensus        12 ~~L~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~------D~G~Y~C~a~N~~G~~   77 (85)
T cd05857          12 VKFRCPAAGNPTPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSI   77 (85)
T ss_pred             EEEEEEcCCCCCCEEEEEE-CCEECCCCCceeeeEEeCCceEEEEccCCcc------cCEEEEEEEEeCCCEE
Confidence            8999999999999999985 88877543211   11223457999877654      8999999999999997

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.58  E-value=2.5e-14  Score=99.17  Aligned_cols=72  Identities=13%  Similarity=0.112  Sum_probs=51.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceE-E-e-----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-A-L-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~-~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      +.|.|.|.|+|+|.++|++ ||..+........ . .     ..++|.|.++...     .|.|.|+|.|+|.+|+. .+
T Consensus        26 v~L~C~a~G~P~p~i~W~k-~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-----~D~G~Y~C~A~N~~G~~~~~   99 (109)
T cd05773          26 ANLVCQAQGVPRVQFRWAK-NGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-----LDYALFTCTAHNSLGEDSLD   99 (109)
T ss_pred             EEEEEECcccCCCEEEEEE-CCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-----CCCEEEEEEEEeCCccCcEE
Confidence            8999999999999999974 8888753221111 1 1     1357999876521     28999999999999997 33


Q ss_pred             EEEEEE
Q psy5697         133 RFVHVK  138 (145)
Q Consensus       133 ~~v~v~  138 (145)
                      ..+.++
T Consensus       100 i~L~~~  105 (109)
T cd05773         100 IQLVST  105 (109)
T ss_pred             EEEEec
Confidence            344443

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.58  E-value=1.7e-14  Score=93.86  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~  133 (145)
                      +.|.|.+.|.|.|.|+|++ |+..+....+......  .++|.|.++..+      |+|.|+|.|+|.+|.+.+.
T Consensus         4 v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           4 VEFTCVATGVPTPIINWRL-NWGHVPDSARVSITSEGGYGTLTIRDVKES------DQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             EEEEEEEEEecCCEEEEEE-CCeECCCCCCEEEEECCCEEEEEECCCChH------HCEEEEEEEEecCCEEEec
Confidence            7899999999999999974 6666654332222222  247999888755      8999999999999998554

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.56  E-value=2.7e-14  Score=95.35  Aligned_cols=73  Identities=15%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             eEEEeeEec--cCCCEEEEEccCCeEeec-ccCceE-E----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTRQTR--YEPSQLGWRFSNNTVIAY-VKDLRI-A----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~a~G--~P~P~i~W~~~dg~~i~~-~~~~~~-~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|.|.+  .++++|+|+ +||++|.. ..+.+. .    ..+|+|.|.+++.+      |+|.|+|.|+|.++++ .
T Consensus         3 ~~l~C~v~~d~~l~~~~~W~-~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~------dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           3 IVLPCQVSHDHSLDIVFTWS-FNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLK------HAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             EEEEEEeccCCCCCcEEEEE-ECCEECcccCCCccEEEeccCCCCCcEEEecCCHH------HCEEEEEEEEcccCceEE
Confidence            789999987  458999997 58999862 222222 2    24679999998765      8999999999999998 6


Q ss_pred             EEEEEEEec
Q psy5697         132 SRFVHVKAD  140 (145)
Q Consensus       132 s~~v~v~~~  140 (145)
                      ++.+.|+.+
T Consensus        76 ~a~L~V~~p   84 (85)
T cd05853          76 AADLIVRGP   84 (85)
T ss_pred             EEEEEEecC
Confidence            778888754

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.55  E-value=3.1e-14  Score=95.06  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=50.0

Q ss_pred             eEEEeeEeccCCCEEEEEcc---CCeEeecccC-ceEEee----------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPSQLGWRFS---NNTVIAYVKD-LRIALS----------NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~---dg~~i~~~~~-~~~~~~----------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|+|.+.|+|.|.|+|++.   +|..+..... ...+..          .++|.|.++..+      |+|.|+|+|+|.
T Consensus         4 v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~   77 (90)
T cd05858           4 VEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFE------DAGEYTCLAGNS   77 (90)
T ss_pred             EEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHH------HCEEEEEEEEeC
Confidence            79999999999999999863   3444431110 111111          147999988765      899999999999


Q ss_pred             CCce-EEEEEEE
Q psy5697         127 AGVI-LSRFVHV  137 (145)
Q Consensus       127 ~G~~-~s~~v~v  137 (145)
                      +|.. .+..+.|
T Consensus        78 ~G~~~~~a~L~V   89 (90)
T cd05858          78 IGISHHSAWLTV   89 (90)
T ss_pred             CCcccceEEEEE
Confidence            9997 4445544

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.55  E-value=4.7e-14  Score=94.53  Aligned_cols=78  Identities=15%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             CCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecc----cCceEEee---CCcEEEcCCCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYV----KDLRIALS---NGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        46 ~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~----~~~~~~~~---~GsL~i~~~~~~~~~~~~d~  116 (145)
                      +|.|...+......  .+.|.|.+.|+|.|.|+|++ ++..+...    .+...+..   .++|.|.++..+      |+
T Consensus         2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~   74 (96)
T cd05732           2 QPKITYLENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT------DA   74 (96)
T ss_pred             CccceecCceeEecCCcEEEEEEEeEcCCCcEEEEE-CCcccCCCCccccceEEEeCCccEEEEEECcCCcC------cC
Confidence            46664322222223  39999999999999999986 55554321    11112221   247999888765      89


Q ss_pred             eEEEEEEEcCCCce
Q psy5697         117 TVYRCRASNEAGVI  130 (145)
Q Consensus       117 G~Y~C~A~N~~G~~  130 (145)
                      |.|+|.|+|.+|..
T Consensus        75 G~Y~C~a~N~~G~~   88 (96)
T cd05732          75 GRYDCEASNRIGGD   88 (96)
T ss_pred             EEeEEEEEeCCCCc
Confidence            99999999999997

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.55  E-value=9.5e-14  Score=93.34  Aligned_cols=71  Identities=13%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                      .+.|.|.+.|.| |.|+|++.||..+....+......+   ++|.|.++..+      |+|.|+|.|+|.+|....+.+.
T Consensus        17 ~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~g~~~~~sv~   89 (92)
T cd04977          17 SKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIE------DAGIYKCVATDAKGTESEATVN   89 (92)
T ss_pred             eEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcc------cCEEEEEEEEcCCCCcceeEEE
Confidence            399999999997 5999987678776543322222222   27999988765      8999999999999876555555


Q ss_pred             E
Q psy5697         137 V  137 (145)
Q Consensus       137 v  137 (145)
                      +
T Consensus        90 l   90 (92)
T cd04977          90 L   90 (92)
T ss_pred             E
Confidence            4

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.55  E-value=3.6e-14  Score=91.92  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=51.9

Q ss_pred             EEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        62 ~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      .|+|.+.|+|+|+++|+ +||.++.... .+....+++|.|.++..+      |+|.|+|.|+|..... ....+++
T Consensus         2 ~l~c~v~g~P~P~v~W~-kdg~~l~~~~-~~~~~~~~~L~I~~v~~~------D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           2 RLTPKVKAFPAPEVIWL-KDGLPAAEKC-SRYHVDGYSLVIKDVTEE------DAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             eEEeeEEEcCCCeEEEE-ECCEECCCCC-cEEEeCCCEEEECcCCHH------HCEEEEEEEEccccceEeeEEEEE
Confidence            68999999999999998 5888876432 233344569999988765      8999999999995554 5555554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.54  E-value=6.4e-14  Score=90.36  Aligned_cols=71  Identities=23%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.|.|.+.|.|+|.|+|++ +|+.+...... .....++ +|.|.++..+      |.|.|+|.|.|.+|.. .+..+.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k-~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLK-NGMDITPKLSKQLTLIANGSELHISNVRYE------DTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCEEEEEE-CCEECCCCCCccEEEeCCCCEEEECcCCcc------cCEEEEEEEEcCCCCcceEEEEEE
Confidence            4689999999999999974 77776533222 2344555 5999887654      8999999999999997 4445555


Q ss_pred             E
Q psy5697         138 K  138 (145)
Q Consensus       138 ~  138 (145)
                      +
T Consensus        74 ~   74 (76)
T cd05736          74 E   74 (76)
T ss_pred             E
Confidence            4

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.54  E-value=4.8e-14  Score=95.51  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             eEEEeeEeccCCC-EEEEEccCCeEeeccc-CceEEeeC-------CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQTRYEPS-QLGWRFSNNTVIAYVK-DLRIALSN-------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~-~~~~~~~~-------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.|.|.|.| .|+|++ ++..+.... ....+..+       ++|.|.++..++     |.|.|.|.|+|.+|...
T Consensus        19 v~L~C~~~g~P~P~~v~W~~-~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d-----~~G~Y~C~A~N~~G~~~   92 (98)
T cd05758          19 GRVECFIFSTPPPDRIVWTW-KENELESGSSGRYTVETDPSPGGVLSTLTISNTQESD-----FQTSYNCTAWNSFGSGT   92 (98)
T ss_pred             EEEEEEEcccCCCCEeEEEE-CCEEccCCCCCCEEEEEecCCCceEEEEEECCccccc-----cceeEEEEEEcCCCccc
Confidence            9999999999999 699974 777775432 22222222       279998876542     68999999999999963

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.52  E-value=5.4e-14  Score=89.98  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=48.3

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCce--EE---eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLR--IA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~--~~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.| .|+|+++|++ ||..+.......  ..   ...++|.|.++..+      |+|.|+|.|+|.+|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFK-DGKELNRKNKPRNIKIRNKKKNSELQINKAKLA------DSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEc-CCeeccccCCcceEEEEecCceEEEEEccCCcc------cCeEEEEEEEEcCCce
Confidence            369999999 9999999985 788776432221  11   12358999887665      8999999999999996

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>KOG4194|consensus

Probab=99.52  E-value=3.8e-14  Score=121.82  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      +-|.+.|=|-..+.|...-+.++       +......|.|++.|.+ +...|  +.|+|.|+|+|.|+|.|.|..|...+
T Consensus       583 ~td~grYQCVvtN~FGStysqk~-------KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP  655 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKA-------KLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP  655 (873)
T ss_pred             cccCceEEEEEecccCcchhhee-------EEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence            56777777777777777655555       2344567999999999 43444  89999999999999999753333343


Q ss_pred             cccCce-EE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVKDLR-IA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~-~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      -....+ ++ ..+..+.|.+++.+      |+|.|+|.|.|.+|++ .++.+.|.
T Consensus       656 AA~eRRl~Vmpedd~f~Itnvk~e------D~GiYtC~A~n~AG~isanAtL~V~  704 (873)
T KOG4194|consen  656 AARERRLHVMPEDDVFFITNVKIE------DQGIYTCTAQNVAGQISANATLTVL  704 (873)
T ss_pred             hhhhheeeecCCCCEEEEeccccc------ccceeEEeeeccccceeeceEEEEe
Confidence            222222 23 44568999999876      8999999999999998 56666665

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.52  E-value=1.3e-13  Score=92.72  Aligned_cols=63  Identities=17%  Similarity=0.130  Sum_probs=48.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|.|.+.|++ +|..+....+.......+   +|.|.++..+      |+|.|+|.|+|.+|..
T Consensus        19 v~L~C~v~g~P~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~   84 (92)
T cd05891          19 LNLTCTVFGNPDPEVIWFK-NDQDIELSEHYSVKLEQGKYASLTIKGVTSE------DSGKYSINVKNKYGGE   84 (92)
T ss_pred             EEEEEEEEEeCCCeEEEEE-CCEECCCCCCEEEEEcCCCEEEEEECCCChh------hCEEEEEEEEeCCCce
Confidence            8999999999999999986 566665433332222333   7899887655      8999999999999998

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.52  E-value=8.8e-14  Score=90.22  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             eEEEeeEeccCCCEEEEEccC--CeEeecccC----ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN--NTVIAYVKD----LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d--g~~i~~~~~----~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|.|+|+|++..  +..+...+.    .......++|.|.++..+      |+|.|+|.|+|.+|+.
T Consensus         4 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           4 ASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQ------DAGLYTCTARNSGGLL   73 (81)
T ss_pred             EEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcc------cCEEEEEEEecCCceE
Confidence            899999999999999998642  222111111    112334578999988765      8999999999999996

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.51  E-value=5.6e-14  Score=90.99  Aligned_cols=63  Identities=17%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|.|.++|++ ||..+............++|.|.++..+      |+|.|.|.|+|..|++
T Consensus        12 v~L~C~~~g~p~p~i~W~k-~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~G~~   74 (82)
T cd05856          12 VRLKCVASGNPRPDITWLK-DNKPLTPTEIGESRKKKWTLSLKNLKPE------DSGKYTCHVSNRAGEI   74 (82)
T ss_pred             EEEEEEeeEeCCCcEEEEE-CCcCCcCCccceecCceEEEEEccCChh------hCEEEEEEEEcCCccE
Confidence            8999999999999999985 6666543221112223358999888765      8999999999999985

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.46  E-value=4.6e-13  Score=87.46  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|. .|.|.|+ +||.++....  +....+++|.|.++..+      |+|.|+|.|.|..|+.
T Consensus        11 ~v~l~C~~~~~-~~~v~W~-k~g~~l~~~~--~~~~~~~~L~I~~~~~~------DsG~Y~C~a~n~~g~~   71 (79)
T cd04973          11 LLQLRCRLRDD-VQSINWT-KDGVQLGENN--RTRITGEEVQIKDAVPR------DSGLYACVTSSPSGSD   71 (79)
T ss_pred             CEEEEEEecCC-CceEEEe-eCCcCCCCCc--eEEEeCCEEEECCCChh------hCEEEEEEEeCCCCcc
Confidence            38999999996 6899998 5888876432  33345678999988665      8999999999999996

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>KOG3513|consensus

Probab=99.46  E-value=4.5e-13  Score=120.87  Aligned_cols=122  Identities=18%  Similarity=0.118  Sum_probs=84.0

Q ss_pred             ecCceeEeeccccCcccCCceeeeEEEec----cCCCCCCCEEEEcCCC--CC--ccCeEEEeeEeccCCCEEEEEccCC
Q psy5697          11 ADADTYIIADRSLFPRPLGYLVGNIVYSS----RSENEHYPFRIKSAPG--GN--RTRGLELTRQTRYEPSQLGWRFSNN   82 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~P~~i~~p~~--~~--~~g~~L~C~a~G~P~P~i~W~~~dg   82 (145)
                      .|.+-|.|+..+  +.....++|..+.-.    ....+.+|.|...++.  ..  +..+.|+|.|.|+|.|+|.|+|.||
T Consensus       203 ~D~~~Y~C~a~~--~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g  280 (1051)
T KOG3513|consen  203 SDFGNYICSATF--PSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDG  280 (1051)
T ss_pred             hhcCceEEEEEc--hhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCC
Confidence            455677777766  555555555533221    1233567777766553  22  2338999999999999999998888


Q ss_pred             eEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEeccC
Q psy5697          83 TVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~  142 (145)
                      .++..  ..+....+++|.|.+++.+      |+|.|+|.|+|..|+. .+-.+.|.+.+.
T Consensus       281 ~~~~~--r~~~~~~~~vL~I~nv~~~------D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~  333 (1051)
T KOG3513|consen  281 KPPPR--RATYSNYGKVLKIPNVQYE------DAGEYECIAENSRGSATHSGHVTVYAPPY  333 (1051)
T ss_pred             CCCCc--ceeeeccccEEEecccCcC------CCeEEEEEEecccccceeeEEEEEecCch
Confidence            76532  2334455679999998765      8999999999999977 444666666543

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.41  E-value=1.2e-12  Score=88.64  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             CeEEEeeEec-----cCCCEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTR-----YEPSQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G-----~P~P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|     .|.|.|+|+| +|..+..  ..+.+....+++|.|.++..+      |+|.|+|+|+|..|..
T Consensus        16 ~~~L~C~~~g~~~~~~p~~~v~Wyk-~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~~~N~~g~~   86 (94)
T cd05756          16 PVVIKCPLFYSYIAQSPGLNLTWYK-SDGKTPIPTEERSRMHQQKDLLWFLPAALE------DSGLYTCVVRNSTYCM   86 (94)
T ss_pred             CeEEECCCCCcccccCCCceEEEEE-cCCCCcccccccceeeecCCeEEEccCCcc------cCeEEEEEEcCCCccE
Confidence            3899999999     7999999986 5554321  112333345679999988766      8999999999999997

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.38  E-value=1.5e-12  Score=84.02  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecc--cCceEE-e---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYV--KDLRIA-L---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~--~~~~~~-~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.|.| .|.|+++|++ +|+.+...  ...+.. .   ..++|.|.++..+      |+|.|.|.|+|++|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFK-NGKEIGAKNKPDNKIKIRKKKKSSELQISKASLA------DNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEE-CCcccccCCCCCceEEEEeCCcEEEEEECcCCcc------cCEEEEEEEEeCCCce
Confidence            479999875 6889999985 78877532  112111 1   2357999887655      8999999999999987

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>KOG4221|consensus

Probab=99.37  E-value=9e-12  Score=113.16  Aligned_cols=91  Identities=20%  Similarity=0.179  Sum_probs=71.7

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .-+|+.+|.. .+.+|  ++|+|.|.|.|+|+|.|.+ ||..|.... .+.+ ...++|.|.+++..      |+|.|+|
T Consensus       237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds-~rivl~g~~slliS~a~~~------dSg~YtC  308 (1381)
T KOG4221|consen  237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS-YRIVLVGGSSLLISNATDD------DSGKYTC  308 (1381)
T ss_pred             ceeeecCCCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc-eEEEEecccceEEeccccc------cCceEEE
Confidence            3468888887 34445  9999999999999999975 999887554 4444 44668999988654      8999999


Q ss_pred             EEEcCCCce-EEEEEEEEeccCCC
Q psy5697         122 RASNEAGVI-LSRFVHVKADSRIP  144 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~~~~~~p  144 (145)
                      +|+|..-++ .+++++|++.++++
T Consensus       309 ~Atn~~D~idasaev~V~a~P~~~  332 (1381)
T KOG4221|consen  309 RATNTNDSIDASAEVTVLAPPGFT  332 (1381)
T ss_pred             EecCCCcccccceEEEEEcCCCCC
Confidence            999976666 67899999877764

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.33  E-value=7.3e-12  Score=82.39  Aligned_cols=61  Identities=18%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      .++|.|.+.| .|.|.|.|++ ++..+..    +....+++|.|..+..+      |+|.|+|.|.|.+|...
T Consensus        18 ~v~L~C~~~~~~~~~~i~W~~-~~~~~~~----~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754          18 DVSFICRAKSKSPAYTLVWTR-VGGGLPS----RAMDFNGILTIRNVQLS------DAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             CEEEEEEcCCCCCCcEEEEEE-CCCcCCC----cccccCCEEEECCCCHH------HCEEEEEEEeccCCeEe
Confidence            3999999975 7999999986 4444321    12234679999888765      89999999999999983

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.32  E-value=8e-12  Score=82.12  Aligned_cols=70  Identities=16%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             eEEEeeEecc--CCCEEEEEccCCeEeecc---cCceE----EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697          61 GLELTRQTRY--EPSQLGWRFSNNTVIAYV---KDLRI----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-  130 (145)
Q Consensus        61 ~~L~C~a~G~--P~P~i~W~~~dg~~i~~~---~~~~~----~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-  130 (145)
                      +.|.|.|.|.  |+|.|+|.+ +|..+...   .....    ....++|.|.++..+      |+|.|.|.|+|..|.. 
T Consensus         4 ~~L~C~~~g~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~------DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           4 LVLNCTVLTELNEGVDFQWTY-PGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLK------DSGTYTCAASSGTMDQK   76 (84)
T ss_pred             EEEEEEEEeCCCccEEEEEec-CCcccCCceEeecccccccceEEEEEEEECCCChh------hCEEEEEEEccCCCceE
Confidence            7999999999  899999974 44332110   00001    112358999888766      8999999999999987 


Q ss_pred             EEEEEEE
Q psy5697         131 LSRFVHV  137 (145)
Q Consensus       131 ~s~~v~v  137 (145)
                      .+..+.|
T Consensus        77 ~s~~v~v   83 (84)
T cd05742          77 ESTKVNI   83 (84)
T ss_pred             EEEEEEE
Confidence            5556654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.31  E-value=2.9e-11  Score=80.23  Aligned_cols=73  Identities=10%  Similarity=0.165  Sum_probs=53.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|+|.+.| |.|++.|++ ++..+....  ..+.....+.|.|.++..+      |+|.|+|.|+|..+...+..+.|.
T Consensus        14 v~L~C~~~~-p~~~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~~~~~~~~~~l~   85 (89)
T cd04979          14 VFLECSPKS-NLASVVWLF-QGGPLQRKEEPEERLLVTEDGLLIRSVSPA------DAGVYTCQSVEHGFKQTLATYSLN   85 (89)
T ss_pred             EEEEEeCCC-CCceEEEEE-CCcccccccCcCceEEEcCCCEEEccCCHH------HCEEEEEEEecCccceeEeEEEEE
Confidence            999999988 999999985 555543221  1233334567999888765      899999999999887777777766


Q ss_pred             ecc
Q psy5697         139 ADS  141 (145)
Q Consensus       139 ~~~  141 (145)
                      +.+
T Consensus        86 V~~   88 (89)
T cd04979          86 VLE   88 (89)
T ss_pred             Eec
Confidence            544

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.31  E-value=3.6e-12  Score=86.94  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             cCeEEEeeE-eccCCCEEEEEccCCeEe--ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          59 TRGLELTRQ-TRYEPSQLGWRFSNNTVI--AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        59 ~g~~L~C~a-~G~P~P~i~W~~~dg~~i--~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+++|.|.. .|+|.|+|+|++ |+.++  ...++......+|+|.|.++.++      |+|.|+|.|+|.+...
T Consensus        19 ~~~~L~C~pP~g~P~p~~~W~k-~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~------D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          19 WGVVLFCDPPPHYPDLSYRWLL-NEFPNFIPEDGRRFVSQTNGNLYIAKVEAS------DRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CcEEEeeCCCCCCCCCEEEEEE-CCcccccccCCCeEEeCCCCcEEEeecCHh------hCceeEEEEEecccCC
Confidence            349999984 999999999985 66543  22222223345899999999776      8999999999997654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>KOG4222|consensus

Probab=99.27  E-value=7.7e-12  Score=113.01  Aligned_cols=94  Identities=19%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             CCCCCEEEEcCCCCC---ccCeEEEeeEeccCCCEEEEEccCCeEee-ccc-CceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          43 NEHYPFRIKSAPGGN---RTRGLELTRQTRYEPSQLGWRFSNNTVIA-YVK-DLRIALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        43 ~~~~P~~i~~p~~~~---~~g~~L~C~a~G~P~P~i~W~~~dg~~i~-~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      ...+|+++++|.+..   ...++|.|.|.|.|+|+|+|+ +||+... ..+ ..+.++++|+|++..+........ |.|
T Consensus        28 qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~-k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~-d~G  105 (1281)
T KOG4222|consen   28 QDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWY-KDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGH-DHG  105 (1281)
T ss_pred             ccCCCceEecchhhhccCCCCceeecCCCCCCCCceecc-cCCcccCCCCCCCcceecCCccEEEEecccCCcccC-CCc
Confidence            367899999999832   233999999999999999998 5885433 222 346789999999987544332233 899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|.|+|+|.+|.+.|+.+.+.
T Consensus       106 ~y~cvasn~~g~avSr~a~L~  126 (1281)
T KOG4222|consen  106 VYSCVASNRLGEAVSRGASLI  126 (1281)
T ss_pred             eeEeeecCccceeeecCceEE
Confidence            999999999999998866655

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=2.4e-11  Score=80.30  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=56.9

Q ss_pred             EEEcCCCCCc--cCeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          49 RIKSAPGGNR--TRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        49 ~i~~p~~~~~--~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +++.|...+.  +.++|.|.+. |.|.+++.|++ +|..+..      ...+++|.|.++..+      |+|.|+|.|.|
T Consensus         3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~~------~~~~~~l~I~~~~~~------dsG~Y~C~~~~   69 (83)
T cd05753           3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKKY------SHSNSNLSIPQATLS------DSGSYHCSGII   69 (83)
T ss_pred             EEECCcceecCCCCEEEEeeCCCCCcceEEEEEE-CCeEccc------cCCCceEEECccCHH------HCEEEEEEEEe
Confidence            3455544333  3399999985 57788999985 6665431      123568999888765      89999999999


Q ss_pred             CCCceEEEEEEEE
Q psy5697         126 EAGVILSRFVHVK  138 (145)
Q Consensus       126 ~~G~~~s~~v~v~  138 (145)
                      ..|...|+.+.|+
T Consensus        70 ~~~~~~s~~~~i~   82 (83)
T cd05753          70 GSYDYSSEPVSIT   82 (83)
T ss_pred             CCceecCCCEEEE
Confidence            9999988888775

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.25  E-value=1.2e-11  Score=84.27  Aligned_cols=65  Identities=20%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             cCeEEEee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe-EEEEEEEcCCCce
Q psy5697          59 TRGLELTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVI  130 (145)
Q Consensus        59 ~g~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G-~Y~C~A~N~~G~~  130 (145)
                      .++.|+|. ..|+|.|+|.|++.+...+.. .....+..+|+|.|.++..+      |+| .|.|.|+|.+...
T Consensus        19 ~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~fs~v~~~------D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          19 DSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLYFANVEEQ------DSHPDYICHAHFPGLRT   85 (95)
T ss_pred             CCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEEEEEEehh------hCCCCeEEEEEcccccc
Confidence            34999997 799999999998533333433 23335556899999998766      788 7999999996543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.25  E-value=2.7e-11  Score=79.32  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             CEEEEcCCC-CCcc--CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          47 PFRIKSAPG-GNRT--RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      |++...|+. ....  .+.|.|.+.|.|. +.+.|+ +||..+.        ..+++|.|.++ .+      |+|.|+|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~-kng~~l~--------~~~~~l~i~~~-~~------dsG~Y~C~   64 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWY-HNGKLLE--------TTTNSYRIRAA-NN------DSGEYRCQ   64 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEE-ECCEEee--------ccCCeEEEeec-cc------CCEEeEEE
Confidence            556666765 2233  3999999999986 579998 5887662        13567888877 44      89999999


Q ss_pred             EEcCCCceEEEEEEE
Q psy5697         123 ASNEAGVILSRFVHV  137 (145)
Q Consensus       123 A~N~~G~~~s~~v~v  137 (145)
                      |.|.   ..|..+++
T Consensus        65 a~~~---~~S~~v~l   76 (78)
T cd05752          65 TQGS---SLSDPVHL   76 (78)
T ss_pred             CCCC---cCCCCEEE
Confidence            9986   34444444

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.24  E-value=8.9e-11  Score=76.07  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceE---EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI---ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~---~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|.|.++|++ ++..+........   ......|.|.++..+      |+|.|.|.|.|..|..
T Consensus        12 ~~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~Y~C~~~n~~g~~   77 (85)
T cd05729          12 VRLKCPASGNPRPTITWLK-DGKPFKKEHRIGGYKVRKKKWTLILESVVPS------DSGKYTCIVENKYGSI   77 (85)
T ss_pred             EEEEEEcCCCCCCeEEEEE-CCEECcccCceeEEEccCcEEEEEEeECCcc------cCEEEEEEEEECCceE
Confidence            8999999999999999985 6666543221111   111236888777654      8999999999999996

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.24  E-value=2.4e-11  Score=81.39  Aligned_cols=59  Identities=12%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+.|.|.+.+ |.|+|+|+ +||.++.... .+....+|.|.|.++..+      |+|.|+|.|.+.-
T Consensus        13 ~v~L~C~~~~-~~~~i~W~-~ng~~i~~~~-~r~~~~~~~L~I~nv~~~------DsG~Y~C~a~e~~   71 (87)
T cd05873          13 NAELKCSPKS-NLARVVWK-FDGKVLTPES-AKYLLYRDGLLIFNASEA------DAGRYQCLSVEKS   71 (87)
T ss_pred             CEEEEEECCC-CCCeEEEE-ECCEECCCCC-ceEEEECCcEEEeCCCHH------HCEEEEEEEEecc
Confidence            3999999865 78999997 5899886543 245567889999988765      8999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.23  E-value=6.6e-11  Score=71.25  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=46.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.+.|.|.+.+.|++ ++..+.  ........+++|.|.++..+      |+|.|+|.++|..|
T Consensus         5 ~~l~C~~~~~~~~~v~W~~-~~~~~~--~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~~~n~~g   63 (63)
T smart00408        5 VTLTCPAEGDPVPNITWLK-DGKPLP--ESNRLSASGSTLTIKSVSLE------DSGEYTCVAENSAG   63 (63)
T ss_pred             EEEEeeCccCCCCeEEEEE-CCEECC--CCCEEecCCcEEEEeeCCcc------cCEEEEEEEecCCC
Confidence            8999999999999999985 666665  22233445668999887654      89999999999876

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.21  E-value=8.6e-11  Score=79.31  Aligned_cols=62  Identities=10%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             CeEEEeeEecc-----CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRY-----EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~-----P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ...|.|.+.+.     |.|.|+|+ +||+++.... . ....+++|.|.++..+      |+|.|.|.|+|.+|..
T Consensus        12 ~~~l~Cp~~~~~~~~~~~p~i~Wy-k~~~~i~~~~-~-~~~~~~~L~I~~v~~~------DsG~YtC~~~n~~~~~   78 (92)
T cd05757          12 GGKIVCPDLDDFKNENTLPPVQWY-KDCKLLEGDR-K-RFVKGSKLLIQNVTEE------DAGNYTCKLTFTHNGK   78 (92)
T ss_pred             CCEEECCChHHccCCCCCCcEEEe-ECCEECCCCc-c-EEecCCEEEEeeCChh------hCEEEEEEEEecCCCE
Confidence            38999987543     68899998 5888886433 2 2237789999988765      8999999999998876

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.20  E-value=2.5e-10  Score=88.86  Aligned_cols=72  Identities=15%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             CeEEEeeEe-----ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC-Cce--E
Q psy5697          60 RGLELTRQT-----RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVI--L  131 (145)
Q Consensus        60 g~~L~C~a~-----G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~-G~~--~  131 (145)
                      .+.|.|.+.     |.|.|+|+|+| ||+++....+......+++|.|.++..+      |+|.|+|.|+... |..  +
T Consensus       146 ~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~~r~~~~~~~~~L~I~~V~~~------DsG~YtC~a~~~~~g~~y~~  218 (227)
T PHA02826        146 DSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYTDRIQLRNNNSTLVIKSATHD------DSGIYTCNLRFNKNSNNYNI  218 (227)
T ss_pred             CEEEEeeCCCCccccCCCceEEEEE-CCEECCCCCCEEEeCCCCEEEECcCCHH------hCEEEEEEEEEeECCEEEEE
Confidence            389999986     45789999985 8888764432222223458999988766      8999999999985 544  5


Q ss_pred             EEEEEEE
Q psy5697         132 SRFVHVK  138 (145)
Q Consensus       132 s~~v~v~  138 (145)
                      ++.+.|.
T Consensus       219 t~~~~~~  225 (227)
T PHA02826        219 TKEYKVT  225 (227)
T ss_pred             EEEEEEE
Confidence            5665554

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.18  E-value=2.6e-10  Score=75.33  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeec-ccC--ceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc-eEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAY-VKD--LRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILSR  133 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~-~~~--~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~-~~s~  133 (145)
                      +.|.|.+.|.|.|.+.|.+ +|+.... .+.  .....   ...+|.|.++..+      |+|.|.|.|+|..+. ..+.
T Consensus         4 ~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~~~~   76 (84)
T cd05861           4 ITVNCIVQGNEVVDFSWTY-PGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVE------DSGTYECAAHESTQDQKAFK   76 (84)
T ss_pred             EEEEEEEECCCccEEEEEE-CCccCCCCceEEEEEecCCcEEEEEEEECCCCcC------CCEEEEEEEEECccCcceeE
Confidence            8999999999999999974 4332110 000  00111   1347999988766      899999999999873 3566


Q ss_pred             EEEEEec
Q psy5697         134 FVHVKAD  140 (145)
Q Consensus       134 ~v~v~~~  140 (145)
                      .+.|...
T Consensus        77 sv~i~V~   83 (84)
T cd05861          77 KVNITVH   83 (84)
T ss_pred             EEEEEEe
Confidence            6666543

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.17  E-value=4.5e-10  Score=91.42  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC---EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS---QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P---~i~W~~~dg~   83 (145)
                      ..|++.|.|...+.+......+... +.-.......+|.+ ..|.+ ..  +..+.|.|.|.|.|+|   .|.|+ +||.
T Consensus       186 ~~d~G~Y~C~~~n~~g~~~~~~t~~-v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~-kng~  262 (326)
T PHA02785        186 KNDAGYYTCVLKYIYGDKTYNVTRI-VKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI-SNGM  262 (326)
T ss_pred             hhhCeEEEEEEEeccCCEEEeEEEE-EEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE-ECCE
Confidence            4677777777755433322111111 11001112345654 44554 22  2339999999999974   89997 5888


Q ss_pred             Eeeccc---CceEE------------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697          84 VIAYVK---DLRIA------------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus        84 ~i~~~~---~~~~~------------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~  133 (145)
                      .+....   ..+..            ...+.|.|.++..+      |+|.|+|.|.|..|...++
T Consensus       263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~------D~G~Y~C~A~n~~~~~~~~  321 (326)
T PHA02785        263 YYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEE------DATTFTCMAFTIPSISKTV  321 (326)
T ss_pred             ECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchh------cCeeeEEEEEeccCceEee
Confidence            775321   11111            11357999988765      8999999999999766544

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.15  E-value=3.5e-10  Score=77.39  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=45.4

Q ss_pred             cCeEEEeeEeccCCC-EEEEEccCCeEeecc-cCceEE----eeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          59 TRGLELTRQTRYEPS-QLGWRFSNNTVIAYV-KDLRIA----LSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        59 ~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~-~~~~~~----~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.+.|.|.+.+.|+| .|.|.+ ++..+... .+...+    ..+|   +|.|.++..++     +.|.|.|.|.|.+|+
T Consensus        17 ~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d-----~~g~Y~C~a~N~~G~   90 (98)
T cd05898          17 ERGKVKCFIGSTPPPDRIAWAW-KENVLESGTSERYTVERTSTGSGVLSTLTINNIMEAD-----FQTHYNCTAWNSFGS   90 (98)
T ss_pred             CcEEEEEEEccCCCCcEEEEEE-ccccccCCCCCCEEEEEEccCCCcEEEEEECCCcccc-----CCcEEEEEEEeCCcc
Confidence            349999999899987 478876 34455432 222222    2233   68998775432     489999999999999


Q ss_pred             e
Q psy5697         130 I  130 (145)
Q Consensus       130 ~  130 (145)
                      .
T Consensus        91 d   91 (98)
T cd05898          91 G   91 (98)
T ss_pred             c
Confidence            7

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.14  E-value=6.2e-10  Score=70.89  Aligned_cols=77  Identities=26%  Similarity=0.324  Sum_probs=53.8

Q ss_pred             CEEEEcCCC-CCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          47 PFRIKSAPG-GNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        47 P~~i~~p~~-~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      |++...+.. ..+..+.|.|.+.|+|.+++.|++ ++..+...+        +.|.+..+..+      |.|.|+|.|.|
T Consensus         2 P~l~~~~~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~~--------~~~~~~~~~~~------~~g~y~C~~~~   66 (80)
T PF13895_consen    2 PVLSSSPQSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSSQ--------NGLFIPNVSPE------DSGNYTCRASN   66 (80)
T ss_dssp             -EEEEESSEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEES--------SEEEESSEEGG------GTEEEEEEEEE
T ss_pred             cEEEccceEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeeee--------eeeeeeeeccc------cCEEEEEEEEe
Confidence            555544432 123339999999999999999985 666665322        11666555543      89999999999


Q ss_pred             CCCceEEEEEEEE
Q psy5697         126 EAGVILSRFVHVK  138 (145)
Q Consensus       126 ~~G~~~s~~v~v~  138 (145)
                      ..|...+..+.|.
T Consensus        67 ~~~~~~s~~~~v~   79 (80)
T PF13895_consen   67 GSGSNTSTSVNVT   79 (80)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCCeEeeeEEee
Confidence            8887777777764

...

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.10  E-value=7.7e-10  Score=74.37  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeEee-cc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE-cCCCceEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTVIA-YV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVILSRFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~i~-~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~-N~~G~~~s~~v~  136 (145)
                      +.|+|.+ +.|.|.|+|++.+ |.... .. ...+....+++|.|.++..+      |+|.|+|.|+ |..|.... .++
T Consensus        14 v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~------DsG~Y~C~a~~~~~~~~~~-~~~   85 (91)
T cd05871          14 TFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRS------DAGVYTCTAVEHSFSQTLA-KYT   85 (91)
T ss_pred             EEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChh------HCEEEEEEEEccCCeEEEE-EEE
Confidence            8999996 6899999998733 32211 11 11234456678999988766      8999999998 56765533 555


Q ss_pred             EEe
Q psy5697         137 VKA  139 (145)
Q Consensus       137 v~~  139 (145)
                      |+.
T Consensus        86 l~v   88 (91)
T cd05871          86 LHV   88 (91)
T ss_pred             EEE
Confidence            554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.07  E-value=3.6e-10  Score=70.93  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccC-CCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.+...+....  ..++.|.|.+.|.| .++|+|+  +...............+++|.|.++..+      |.|.|+|+
T Consensus         1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~------~~g~y~C~   72 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY--DSNPSFNSNSRGSSSSNSTLTISNVTRS------DNGTYTCI   72 (75)
T ss_dssp             ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE--TEEEEEEEEEEEEEEEEEEEEESSCCGG------GTEEEEEE
T ss_pred             CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE--ecCCceeeeeeeccceeeEEEEccCCHH------hCcEEEEE
Confidence            466776666522  22299999999999 8999997  2211111111223445678999877655      89999999


Q ss_pred             EEc
Q psy5697         123 ASN  125 (145)
Q Consensus       123 A~N  125 (145)
                      |+|
T Consensus        73 a~N   75 (75)
T PF13927_consen   73 ASN   75 (75)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            998

...

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.07  E-value=2.2e-09  Score=72.86  Aligned_cols=59  Identities=8%  Similarity=0.101  Sum_probs=41.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +.|+|.+.|.|.|.|.|++.++..+.       ...+.....   .+++|.|.++..+      |+|.|+|.|..
T Consensus        15 v~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~------D~G~YtC~~~t   83 (95)
T cd05882          15 VTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLS------DEGEYTCSIFT   83 (95)
T ss_pred             EEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcc------cCEEEEEEEEe
Confidence            99999999999999999864432211       111111111   1358999998776      89999999988

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.07  E-value=1.3e-09  Score=71.12  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCC-------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNG-------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|.|.| +|.|+|+|++ ||+++...........+|       .|.|.+..      ..|.|.|+|.|+|..-.. .
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~------~~~~~~y~C~a~n~~l~~~~   74 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFR-DGEVLDGATYSKELLKDGKRETTVSTLPITPSD------HDTGRTFTCRARNEALPTGK   74 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEE-CCEEccCceeeeeEecCCCeEEEEEEEEEeCce------ecCCCEEEEEEcCccCCCCc
Confidence            579999987 7999999985 888875422112223343       35554332      226789999999987654 4


Q ss_pred             EEEEEE
Q psy5697         132 SRFVHV  137 (145)
Q Consensus       132 s~~v~v  137 (145)
                      .+.+++
T Consensus        75 ~~s~~l   80 (82)
T cd05759          75 ETSVTL   80 (82)
T ss_pred             EEEEEE
Confidence            445544

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.05  E-value=2.2e-09  Score=72.56  Aligned_cols=70  Identities=9%  Similarity=0.119  Sum_probs=47.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.|.|.|.|.|++.++..+.       ..++.....   ...+|.|.++..+      |+|.|.|.+.+..+..
T Consensus        15 v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~------DsG~Y~C~~~t~~~~~   88 (95)
T cd07701          15 ANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLS------DEGQYTCSLFTMPVKT   88 (95)
T ss_pred             EEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcc------cCEEEEEEeEeecCcc
Confidence            89999999999999999854333221       111221111   2248999988766      8999999999975554


Q ss_pred             EEEEEE
Q psy5697         131 LSRFVH  136 (145)
Q Consensus       131 ~s~~v~  136 (145)
                      .+..+.
T Consensus        89 ~~~~l~   94 (95)
T cd07701          89 SKAYLT   94 (95)
T ss_pred             EEEEEE
Confidence            444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>KOG4194|consensus

Probab=99.04  E-value=2.9e-10  Score=98.25  Aligned_cols=123  Identities=19%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             ceeeeecCceeEeec----cc---------cCcccCCceeeeEEEeccCC-----CCCCCEEEEcCCC---CCccCeEEE
Q psy5697           6 ISTLLADADTYIIAD----RS---------LFPRPLGYLVGNIVYSSRSE-----NEHYPFRIKSAPG---GNRTRGLEL   64 (145)
Q Consensus         6 ~~~~~~~~~~~~~~~----~~---------~~p~~~~~~~~~~~~~~~~~-----~~~~P~~i~~p~~---~~~~g~~L~   64 (145)
                      -+.++|||++-|+..    +-         .||+++..   ..+.+....     ..-+|.++.+|.+   ..+..++|+
T Consensus       448 SssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad---~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirft  524 (873)
T KOG4194|consen  448 SSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLAD---QSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFT  524 (873)
T ss_pred             ccceEEeccHHHHHHHHHhcccccceeeeccCCccccc---ceeEeechhhceecCCCCcceecCchHhhhhhccceEEE
Confidence            345599999888765    21         28998743   324443332     2347899999988   224459999


Q ss_pred             eeEec--cCCCEEEEEccCCeEeec--cc-Cce--EEe----------eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          65 TRQTR--YEPSQLGWRFSNNTVIAY--VK-DLR--IAL----------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        65 C~a~G--~P~P~i~W~~~dg~~i~~--~~-~~~--~~~----------~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      |.|.|  .-+-+|.|++ |.+....  .. ..+  .+.          -.+-|.+.++.-.      |+|.|||+++|.+
T Consensus       525 C~a~sssasplsi~WR~-dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~t------d~grYQCVvtN~F  597 (873)
T KOG4194|consen  525 CNAYSSSASPLSIEWRK-DNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFT------DEGRYQCVVTNHF  597 (873)
T ss_pred             EEeccCCCCCceeEeee-ccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecc------cCceEEEEEeccc
Confidence            99988  5567999964 5442211  11 011  111          1235777776544      8999999999999


Q ss_pred             CceEEEEEEEE
Q psy5697         128 GVILSRFVHVK  138 (145)
Q Consensus       128 G~~~s~~v~v~  138 (145)
                      |+..|+.+.++
T Consensus       598 GStysqk~Klt  608 (873)
T KOG4194|consen  598 GSTYSQKAKLT  608 (873)
T ss_pred             CcchhheeEEE
Confidence            99988876665

>KOG4222|consensus

Probab=99.03  E-value=3.3e-10  Score=102.70  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=72.8

Q ss_pred             CCCCCCCEEEEcCCCC-CccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          41 SENEHYPFRIKSAPGG-NRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~~-~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .....+|.|.+.|.+. +..+  +.++|++.|+|.|+++|.+ ++..+.- ++......+-+|.|..+...      |+|
T Consensus       220 lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~P~-~ry~i~~d~qtl~i~r~tp~------deg  291 (1281)
T KOG4222|consen  220 LSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSLPR-SRYSILDDTQTLRIDRVTPT------DEG  291 (1281)
T ss_pred             eeeccCCccccccccceeecccccccccccCCCCCCceeeec-cCCCCCc-cceeeeeccccccccccCCC------ccc
Confidence            4556789999999983 2223  8999999999999999976 4444432 22334455579999877665      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEEEeccCC
Q psy5697         118 VYRCRASNEAGVI-LSRFVHVKADSRI  143 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v~~~~~~  143 (145)
                      .|.|.|+|.+|.. .++.++|++.+.|
T Consensus       292 ~y~C~a~n~vG~l~asa~ltV~apP~f  318 (1281)
T KOG4222|consen  292 TYVCPAENLVGGLEASATLTVQAPPSF  318 (1281)
T ss_pred             ceeeeccccccccccccceEEecCccc
Confidence            9999999999998 7888988876654

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.02  E-value=1.2e-09  Score=72.06  Aligned_cols=64  Identities=16%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeeccc----CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.+ .|.|+++|+|+ +||+++....    ........++|.|.+....      |.+.|.|.|.|+++...
T Consensus         2 ~~L~C~s~~skP~a~i~W~-k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~D------dg~~~~C~A~n~a~~~~   70 (80)
T cd05885           2 VELTCLSPRSKPAATLRWY-RDRKELKGVISQQENGKTVSVSNTIRFPVDRKD------DGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEeCCCccCCCeEEEE-ECCEECCCCcccccCCceEEEEEEEEEEeeecc------CCcEEEEEEEChhhCCC
Confidence            5799995 88999999998 5888875322    1112223457888765433      79999999999999763

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.01  E-value=2.9e-09  Score=70.71  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEe--ecccCceE-----EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVI--AYVKDLRI-----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i--~~~~~~~~-----~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-  130 (145)
                      +.|.|.+.|+|.|  .+.|...+....  ...+..+.     .....+|.|.++..+      |+|.|.|.|+|..|.. 
T Consensus         4 ~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           4 LVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLS------DLGRYTCTASSGQMIAK   77 (86)
T ss_pred             EEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcc------cCEEEEEEEeecceEec
Confidence            7899999987755  779975332221  11111011     112458999887665      8999999999999976 


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      .+..+.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            55566654

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00409 IG Immunoglobulin

Probab=98.93  E-value=2.3e-08  Score=63.03  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.+.+.+.+.+.|++.++..+...........+  .+|.|.++..+      |+|.|.|.+.|..|...+. +.|.
T Consensus        12 ~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~~-~~l~   84 (86)
T smart00409       12 VTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASST-TTLT   84 (86)
T ss_pred             EEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEEE-EEEE
Confidence            8999999999999999986437766422222222222  57999887655      8999999999999887544 4443

>smart00410 IG_like Immunoglobulin like

Probab=98.93  E-value=2.3e-08  Score=63.03  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.+.+.+.+.+.|++.++..+...........+  .+|.|.++..+      |+|.|.|.+.|..|...+. +.|.
T Consensus        12 ~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~------d~G~Y~C~v~~~~~~~~~~-~~l~   84 (86)
T smart00410       12 VTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPE------DSGTYTCAATNSSGSASST-TTLT   84 (86)
T ss_pred             EEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccc------cCeEEEEEEEcCCCeEEEE-EEEE
Confidence            8999999999999999986437766422222222222  57999887655      8999999999999887544 4443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.91  E-value=5.1e-09  Score=71.05  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=45.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEee-c------------ccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIA-Y------------VKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~-~------------~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .++|.|.++|.|.+.|.|++.+.+.+. .            .++....   ..+|  +|.|.++..+      |+|+|.|
T Consensus         9 ~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~s------DsgtY~C   82 (94)
T cd07690           9 TAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIE------DSDTYIC   82 (94)
T ss_pred             CEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHH------HCEEEEE
Confidence            399999999999999999853323211 0            0111111   1334  5999988766      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .+.|..+++
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            999999876

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.89  E-value=2.2e-08  Score=67.01  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEee-------cccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIA-------YVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~-------~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.+.|.|.|.+.|++.++..+.       ...+.....   .+.+|.|.++..+      |+|.|.|.+.+....
T Consensus        14 ~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~~~~~~   87 (95)
T cd05717          14 TATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLS------DEGRYTCSLYTMPVQ   87 (95)
T ss_pred             CEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcc------cCEEEEEEEecCCCc
Confidence            399999999999999999864443321       011111111   2347999888766      899999999988654


Q ss_pred             eEEEEE
Q psy5697         130 ILSRFV  135 (145)
Q Consensus       130 ~~s~~v  135 (145)
                      ..+..+
T Consensus        88 ~~~~~~   93 (95)
T cd05717          88 TAKATV   93 (95)
T ss_pred             eEEEEE
Confidence            333343

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>KOG4221|consensus

Probab=98.86  E-value=1.9e-09  Score=98.45  Aligned_cols=80  Identities=18%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             CCCCEEEEcCCCC-CccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPGG-NRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~~-~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|++.|.+. ..++  +.|+|.+.|.|.|.+.|+ ++|..+.. .+...+..+|.|+|.-+-..      |+|.||
T Consensus       326 ~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~-kNgd~~ip-sdy~ki~~~~~lrIlgi~~s------deg~yQ  397 (1381)
T KOG4221|consen  326 LAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWY-KNGDRIIP-SDYFKIVGGGNLRILGIVKS------DEGFYQ  397 (1381)
T ss_pred             EcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEE-ecCcccCc-ccceEecCCCCcEEEEEecc------cchhhh
Confidence            4578999999883 2233  899999999999999998 58877654 34556666777888876544      899999


Q ss_pred             EEEEcCCCceE
Q psy5697         121 CRASNEAGVIL  131 (145)
Q Consensus       121 C~A~N~~G~~~  131 (145)
                      |+|+|.+|.+.
T Consensus       398 cvaen~~G~a~  408 (1381)
T KOG4221|consen  398 CVAENDAGSAQ  408 (1381)
T ss_pred             hhhccCccccc
Confidence            99999999983

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.86  E-value=1.3e-08  Score=69.26  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             eEEEee-Eec----cCCCEEEEEccCCeEeecccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce---E
Q psy5697          61 GLELTR-QTR----YEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI---L  131 (145)
Q Consensus        61 ~~L~C~-a~G----~P~P~i~W~~~dg~~i~~~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~---~  131 (145)
                      ..|.|. ..+    .+.|+|+|+ +|+.++...+..... ..++.|.|.++..+      |+|.|+|.|+|.+|..   +
T Consensus        13 ~~l~Cp~~~~f~~~~~~~~v~WY-Kd~~~l~~~~~~~~~~~~~~~L~I~~v~~~------D~G~YtC~~~~~~~g~~y~v   85 (95)
T cd05897          13 GKLVCPDLSDFTINRTDVELQWY-KDSVLLDKDNEKFYSLKGSTYLHIIDVSLN------DSGYYTCKLQFTHEGKKYNI   85 (95)
T ss_pred             cEEECCCHHHcccCCCCCcEEEc-cCCEECcCCCcceEecCCCCEEEEEEcChh------hCEEEEEEEEEeeCCEEEEE
Confidence            788997 233    478899998 588888654322223 23457999988766      8999999999998654   5


Q ss_pred             EEEEEEEe
Q psy5697         132 SRFVHVKA  139 (145)
Q Consensus       132 s~~v~v~~  139 (145)
                      ++.+.|..
T Consensus        86 tr~~~l~v   93 (95)
T cd05897          86 TRIIKLRI   93 (95)
T ss_pred             EEEEEEEE
Confidence            66666653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.78  E-value=3.9e-08  Score=80.07  Aligned_cols=69  Identities=19%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CeEEEeeE-----eccCCCEEEEEccCCeEeecccCceEEeeCCc-EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          60 RGLELTRQ-----TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS-LMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        60 g~~L~C~a-----~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs-L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      .+.|.|.+     .|+|.|+|+|+| +|...   . ......+|+ |.|.++..+      |+|.|+|+|+|..|.. .+
T Consensus        43 ~~~l~C~~~~~~~~g~p~~~i~W~K-~g~~~---~-~~~~~~~g~~l~i~~~~~~------DsG~Y~C~a~N~~g~~~~s  111 (326)
T PHA02785         43 PVILPCPQINTLSSGYNILDILWEK-RGADN---D-RIIPIDNGSNMLILNPTQS------DSGIYICITKNETYCDMMS  111 (326)
T ss_pred             CEEEECCCccccccCCCCceEEEEE-CCCcc---c-eEEEccCCceEEEcccCcc------cCeEEEEEEECCCcceEEE
Confidence            38999997     799999999986 55321   1 223345664 888776554      8999999999999876 45


Q ss_pred             EEEEEEe
Q psy5697         133 RFVHVKA  139 (145)
Q Consensus       133 ~~v~v~~  139 (145)
                      ..++|..
T Consensus       112 ~~L~V~~  118 (326)
T PHA02785        112 LNLTIVS  118 (326)
T ss_pred             EEEEEEe
Confidence            5666653

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.76  E-value=2.2e-08  Score=61.81  Aligned_cols=56  Identities=13%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCc----EEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS----LMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs----L~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|.+ .+.|.+.++|.+.+. .............+..    |.|.++..+      |+|.|+|.|
T Consensus         4 v~L~C~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~v   64 (64)
T PF00047_consen    4 VTLTCSVSSGPPPTTVTWSKNGQ-SLPEGSTTNRSTNSVSSTSRLTISNVTPE------DSGTYTCVV   64 (64)
T ss_dssp             EEEEEEEEESSSTSEEEEEETTT-TTSEEEEEEEEETTTEEEEEEEESSCTGG------GTEEEEEEE
T ss_pred             EEEEeecCCCCCCcEEEEEECCc-cccCcceeEeecccceeeeEEEEccCCHH------HCEEEEEEC
Confidence            8999999 999999999986443 3221111111222222    999988765      899999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.68  E-value=9.1e-08  Score=74.49  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CeEEEeeEeccCCC-----------EEEEEccCCeEe--ecc-cC--------ceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELTRQTRYEPS-----------QLGWRFSNNTVI--AYV-KD--------LRIALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C~a~G~P~P-----------~i~W~~~dg~~i--~~~-~~--------~~~~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .+.|.|.+.++|+|           +|+|+|. +...  .+. .+        ......+++|.|.++..+      |+|
T Consensus        39 ~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~-~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~------DsG  111 (227)
T PHA02826         39 PMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT-DSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI------DEG  111 (227)
T ss_pred             CEEEEccccccccccccccccCCCccEEEEeC-CeEEEEEcCCCccccccccccceecCCCeEEECCCChH------HCE
Confidence            39999999997755           9999864 4331  110 00        011123579999998766      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEE
Q psy5697         118 VYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      .|+|.|+|..|.. .+..+.|
T Consensus       112 ~Y~C~a~N~~~~~~~~i~L~V  132 (227)
T PHA02826        112 IYICTISSGNICEESTIRLTF  132 (227)
T ss_pred             EEEEEEEECCcceEEEEEEEE
Confidence            9999999998875 3334444

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.62  E-value=1.9e-07  Score=62.34  Aligned_cols=84  Identities=12%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          46 YPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        46 ~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +|.+.-.|...+..  .++|.|.+. .|...+.|++ ||...... ........+.+.|.++..+      |+|.|+|.+
T Consensus         2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~~~~~-~~~~~~~~~~f~i~~v~~~------~~G~Y~C~~   72 (91)
T cd05751           2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYR-EGSTFAVK-KPPEPQNKAKFFIPSMKRE------HAGRYRCYY   72 (91)
T ss_pred             CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEE-CCCCcccc-ccCCCceeEEEEccCCChh------HCEEEEEEE
Confidence            46666666553333  499999886 6889999974 66543211 0111123457899888765      899999999


Q ss_pred             EcC-CCc-eEEEEEEEE
Q psy5697         124 SNE-AGV-ILSRFVHVK  138 (145)
Q Consensus       124 ~N~-~G~-~~s~~v~v~  138 (145)
                      .|. .+. ..|..+.+.
T Consensus        73 ~~~~~~~S~~Sd~lel~   89 (91)
T cd05751          73 RSGVALWSEPSDPLELV   89 (91)
T ss_pred             ECCCCccCCCCCcEEEE
Confidence            997 333 244445443

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.58  E-value=6.7e-07  Score=58.97  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeE----ee------------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTV----IA------------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~----i~------------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      ++|.|.....+...|.|++.+...    +.            ...+......+++|.|.+++.+      |+|.|+|...
T Consensus         4 VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~------DsG~Y~c~v~   77 (92)
T cd05741           4 VTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKE------DSGTYTLQII   77 (92)
T ss_pred             EEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCch------hcEEEEEEEE
Confidence            899999888888899998754211    10            0112233456789999998776      8999999999


Q ss_pred             cCCCceEEEEEEEE
Q psy5697         125 NEAGVILSRFVHVK  138 (145)
Q Consensus       125 N~~G~~~s~~v~v~  138 (145)
                      +..|.-....+++.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            99988777777664

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.45  E-value=7e-07  Score=58.51  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=38.6

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEe-eCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIAL-SNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~-~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.| +|.+.|+|+ +||+.+.... ..... .+|+..+.   .+...   ...+.+.|+|.|.|+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~-~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~---~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWF-KGDKELKGVK-LKEEDENGKTFTVTSSLRFQVD---REDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEE-ECCEEccCce-eeEecCCCCEEEEEEEEEEEcc---hhhCCCEEEEEEeChhcCC
Confidence            579999966 599999998 4778775322 11222 23332221   11111   1114569999999997653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.40  E-value=6.7e-06  Score=56.76  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=47.6

Q ss_pred             CeEEEeeEeccCCC--EEEEEccC----CeEee----c---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPS--QLGWRFSN----NTVIA----Y---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P--~i~W~~~d----g~~i~----~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.  +.|..  .|+|+|..    +..|.    .         .++...+..||+|.|.+++.+      |+|.|.
T Consensus        15 ~V~L~v~--~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~------D~G~Y~   86 (105)
T cd05774          15 NVLLLVH--NLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK------DTGFYT   86 (105)
T ss_pred             CEEEEec--CCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc------cCEEEE
Confidence            3899985  45666  99999742    11211    0         123345678999999998766      899999


Q ss_pred             EEEEcCCCceEEEEEEE
Q psy5697         121 CRASNEAGVILSRFVHV  137 (145)
Q Consensus       121 C~A~N~~G~~~s~~v~v  137 (145)
                      |.+.|.-+......+++
T Consensus        87 ~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          87 LQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEeCCccEEEEEEEE
Confidence            99999886644444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.35  E-value=3.2e-06  Score=56.35  Aligned_cols=67  Identities=21%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|+|...+ +..+++|++ +|..+... ........| |.|..+..+      |+|.|+|.|. +.|-. ....+.+.
T Consensus        14 v~L~C~~~s-~~A~v~W~~-ng~~l~~~-~r~~~~~~G-LlI~~~~~~------dsG~Y~C~s~-E~gf~~~~~~y~l~   81 (85)
T cd05872          14 VVLPCQLRS-NLASPVWLF-NGTPLNAQ-FSYRVGTDG-LLILVTSPE------HSGTYRCYSE-EEGFQQLVASYSLN   81 (85)
T ss_pred             EEEECCCCC-CCccEEEEE-CCcccCCC-cceEEeCCC-CEEEECCHh------hCEEEEEEEe-cCCCeEEEEEEEEE
Confidence            899999988 477999985 77777532 222333444 667666554      8999999987 66654 33455544

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.32  E-value=3.2e-06  Score=58.38  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             eEEEeeE------e-----ccCCCEEEEEccCCeEeec-c----cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          61 GLELTRQ------T-----RYEPSQLGWRFSNNTVIAY-V----KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        61 ~~L~C~a------~-----G~P~P~i~W~~~dg~~i~~-~----~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      +.|.|..      +     -.+...++|+| +|..... .    .+.|....++.|.|.++..+      |+|.|.|++.
T Consensus        18 v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK-~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~e------DSG~Y~C~~r   90 (104)
T cd05896          18 VRIKCALFYGYIRTNYSMAQSAGLSLMWYK-SSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQ------DSGLYTCVLR   90 (104)
T ss_pred             EEEECCCccccccccccccccCCceEEEEE-CCCCCCCCCcccccceeEEEeCCEEEEEeCChh------hCeEEEEEEC
Confidence            8888885      1     22245899986 5433221 1    11345566779999998876      8999999999


Q ss_pred             cCCCce
Q psy5697         125 NEAGVI  130 (145)
Q Consensus       125 N~~G~~  130 (145)
                      |+-.-.
T Consensus        91 N~t~C~   96 (104)
T cd05896          91 NSTYCM   96 (104)
T ss_pred             CCCcce
Confidence            997544

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.32  E-value=7.4e-06  Score=56.31  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             CeEEEeeEeccCCCE-EEEEccCCeEeecccCce-EEee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697          60 RGLELTRQTRYEPSQ-LGWRFSNNTVIAYVKDLR-IALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~-i~W~~~dg~~i~~~~~~~-~~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-  130 (145)
                      .+.|.|....+|+|+ +.|.+ ++..+....... ....      -..|.+..++.+      +.|.|.|.|+|+.++. 
T Consensus        20 ~~~L~V~ieAYP~p~~~~W~~-~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~------E~G~YTf~a~N~~~~~s   92 (101)
T cd05860          20 NLDLIVEYEAYPKPEHQQWIY-MNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGT------EGGTYTFLVSNSDASAS   92 (101)
T ss_pred             CEEEEEEEEeCCCCeeeEEEc-CCcccCccccceeEEeccCceEEEEEEEEeecChh------hCcEEEEEEECCCCeEE
Confidence            389999999999998 99975 555443222211 1111      136777766554      7999999999999987 


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      ++..+.|+
T Consensus        93 ~tF~l~v~  100 (101)
T cd05860          93 VTFNVYVN  100 (101)
T ss_pred             EEEEEEEe
Confidence            56566654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.31  E-value=3.5e-06  Score=57.27  Aligned_cols=62  Identities=23%  Similarity=0.087  Sum_probs=41.7

Q ss_pred             eEEEeeEeccCCCEEEEEccC-C-eE---eec-------ccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-N-TV---IAY-------VKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g-~~---i~~-------~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|.+.+.+.+.+.|++.+ + .+   +..       ..+.....   ..+  +|.|.+++.+      |+|.|.|.+
T Consensus        16 v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~~   89 (109)
T cd04983          16 VTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS------DSAVYFCAL   89 (109)
T ss_pred             EEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH------HCEEEEEEE
Confidence            999999999899999998743 1 11   100       11111121   123  7999888765      899999999


Q ss_pred             EcCCC
Q psy5697         124 SNEAG  128 (145)
Q Consensus       124 ~N~~G  128 (145)
                      .+..|
T Consensus        90 ~~~~~   94 (109)
T cd04983          90 SESGG   94 (109)
T ss_pred             ecCCC
Confidence            98754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.28  E-value=1.9e-05  Score=53.62  Aligned_cols=65  Identities=15%  Similarity=0.173  Sum_probs=42.7

Q ss_pred             CeEEEeeEeccC------CCEEEEEccC--C--e-Eee--cc-------cC-ceEEe-----eCCcEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE------PSQLGWRFSN--N--T-VIA--YV-------KD-LRIAL-----SNGSLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G~P------~P~i~W~~~d--g--~-~i~--~~-------~~-~~~~~-----~~GsL~i~~~~~~~~~~~  113 (145)
                      .++|.|...+.|      .+.|.|++..  +  . .+-  ..       +. .+...     .+.+|.|.+++.+     
T Consensus         4 ~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s-----   78 (106)
T cd05714           4 NVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE-----   78 (106)
T ss_pred             CEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH-----
Confidence            389999988764      5799998752  1  1 111  00       00 01111     2348999988766     


Q ss_pred             CCCeEEEEEEEcCCCce
Q psy5697         114 VHSTVYRCRASNEAGVI  130 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~  130 (145)
                       |+|+|.|.+.|..+..
T Consensus        79 -D~G~Y~C~v~~~~~~~   94 (106)
T cd05714          79 -DSGRYRCEVIDGIEDE   94 (106)
T ss_pred             -HCEEEEEEEEcCCCce
Confidence             8999999999987754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.26  E-value=1e-05  Score=53.33  Aligned_cols=66  Identities=11%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeC-CcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSN-GSLMFPP---FPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~-GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.|.|. |.++|+|+ +||+.+...........+ |+..+..   +...   ...+...|.|.|.++....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~-k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~---~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWR-KGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVT---REDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEE-ECCEECCCcceeEEECCCCCEEEEEEEEEEEec---chhCCCEEEEEEECcccCC
Confidence            5799999775 99999997 588876532211122233 3333221   1111   1225678999999997543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.24  E-value=1.8e-06  Score=57.19  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=42.0

Q ss_pred             CeEEEeeEecc-CC-CEEEEEccCCeEeecccC--ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKD--LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.|.|. |. ++|+|+ +||+.+.....  ......+|+..+.   .+...   ...+.|.|+|.|+|....
T Consensus        15 ~~~L~C~a~g~~P~~~~i~W~-~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          15 SVTLTCLATGFYPPDITVTWL-KNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPS---DWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             CeEEEEEEeeEECCCcEEEEE-ECCEECCCceeccccccCCCCCEEEEEEEEECHH---HhCCCCCEEEEEEeCCCC
Confidence            38999999998 63 689997 58888754321  1233455543332   12211   112689999999998653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.23  E-value=1.9e-05  Score=52.60  Aligned_cols=64  Identities=13%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             eEEEeeEeccC---CCEEEEEccCCe---Eee---c------cc--CceEEe-----eCCcEEEcCCCCCCCCCCCCCeE
Q psy5697          61 GLELTRQTRYE---PSQLGWRFSNNT---VIA---Y------VK--DLRIAL-----SNGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        61 ~~L~C~a~G~P---~P~i~W~~~dg~---~i~---~------~~--~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      +.|.|...+.+   ...|.|++.+..   .+.   .      .+  ..+..+     .+.+|.|.++..+      |+|.
T Consensus         3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~------D~G~   76 (98)
T cd05718           3 VTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLE------DEGN   76 (98)
T ss_pred             EEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcc------cCEE
Confidence            78999988765   458999975531   110   0      00  112111     2458999988766      8999


Q ss_pred             EEEEEEc-CCCce
Q psy5697         119 YRCRASN-EAGVI  130 (145)
Q Consensus       119 Y~C~A~N-~~G~~  130 (145)
                      |.|.+.+ ..|+.
T Consensus        77 Y~C~v~~~~~g~~   89 (98)
T cd05718          77 YICEFATFPQGNR   89 (98)
T ss_pred             EEEEEEeCCCCcE
Confidence            9999875 56665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.22  E-value=9e-06  Score=58.05  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC---ccCeEEEeeEecc-CC-CEEEEE
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN---RTRGLELTRQTRY-EP-SQLGWR   78 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~---~~g~~L~C~a~G~-P~-P~i~W~   78 (145)
                      .|..+ ..|+++|.|.........    .+.    .......+|.+...+....   ...+.|.|.|.|. |+ ++|+|+
T Consensus         4 ~i~~v~~~D~G~Y~C~~~~~~~~~----~~~----~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           4 TLPGLTVHDEGTYICSVSTPPHQA----QQI----IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             EECCCCHHHCEEEEEEEEccCcce----eeE----EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            34444 569999999975421111    111    1122235676655554321   2338999999996 54 489998


Q ss_pred             ccCCeEee----cccCc----eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          79 FSNNTVIA----YVKDL----RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        79 ~~dg~~i~----~~~~~----~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      + ||....    ...+.    .....+|++.+..   +...   ...+.+.|.|.+.+..
T Consensus        76 ~-~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~---~~~~g~~ytC~V~H~~  131 (139)
T cd05771          76 R-EPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPG---TEDAGATYTCRVSHVS  131 (139)
T ss_pred             E-CCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCC---ccCCCCEEEEEEEcCC
Confidence            5 553311    00111    1234566554431   2221   1114568999998763

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.21  E-value=6.6e-06  Score=56.42  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee--------------c--ccCceEEeeC---CcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA--------------Y--VKDLRIALSN---GSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~--~~~~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+.|.|.+.+ +.+.+.|+|.+ |+...              .  ..+......+   -+|.|.++.++      |+|.|
T Consensus        15 ~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~------Dsg~Y   87 (110)
T cd05899          15 SVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE------DSAVY   87 (110)
T ss_pred             cEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh------hCEEE
Confidence            3999999998 88999999754 22111              0  0111111111   26999888765      89999


Q ss_pred             EEEEEcCCC
Q psy5697         120 RCRASNEAG  128 (145)
Q Consensus       120 ~C~A~N~~G  128 (145)
                      .|.+.+..|
T Consensus        88 ~Ca~~~~~~   96 (110)
T cd05899          88 LCASSLGGG   96 (110)
T ss_pred             EEEeeCCCC
Confidence            999998644

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.21  E-value=2.2e-05  Score=53.32  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=45.5

Q ss_pred             CeEEEeeEeccC------CCEEEEEccCCe--E-----ee---------cccCceEEee----CCcEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE------PSQLGWRFSNNT--V-----IA---------YVKDLRIALS----NGSLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G~P------~P~i~W~~~dg~--~-----i~---------~~~~~~~~~~----~GsL~i~~~~~~~~~~~  113 (145)
                      .++|.|.....|      ...|.|++.+..  +     +.         ..++......    +.+|.|.++..+     
T Consensus         4 ~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~-----   78 (106)
T cd05877           4 NVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE-----   78 (106)
T ss_pred             cEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH-----
Confidence            389999987664      467999975321  1     11         0111111111    237999888765     


Q ss_pred             CCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         114 VHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                       |+|+|+|.+.|..|.. ..-.+.|+
T Consensus        79 -DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          79 -DYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             -HCEEEEEEEEecccceEEEEEEEEE
Confidence             8999999999988875 23344444

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.20  E-value=3.2e-05  Score=52.54  Aligned_cols=63  Identities=10%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEe-------ecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVI-------AYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i-------~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.+.+.....+.|++.+...+       ...++......+|   +|.|..+..+      |+|.|.|.+....-.
T Consensus        15 a~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~------D~G~Y~Cqv~t~p~~   87 (95)
T cd05881          15 AIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLS------DEGRYFCQLYTDPPQ   87 (95)
T ss_pred             EEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcc------cCEEEEEEEEcccCe
Confidence            9999999999888888886543332       1122222222123   5899887665      899999999764433

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.16  E-value=1.6e-05  Score=53.70  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=50.4

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCeEeecc------------cC--ceE-Ee-eCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYV------------KD--LRI-AL-SNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~------------~~--~~~-~~-~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|...- ...-.|.|++.....+...            +.  .+. .. .+++|.|.+++.+      |+|.|.|.
T Consensus         6 sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~------DsG~Y~c~   79 (97)
T cd05775           6 SVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKME------DAGSYRAE   79 (97)
T ss_pred             eEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchH------HCEEEEEE
Confidence            3899998754 5667899986422111110            01  121 22 2469999998766      89999999


Q ss_pred             EEcCCCceEEEEEEEEe
Q psy5697         123 ASNEAGVILSRFVHVKA  139 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~~  139 (145)
                      ..+..|......++|+.
T Consensus        80 v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          80 INTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEcCCCCeEEEEEEEEe
Confidence            99999998888777754

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.08  E-value=1.6e-05  Score=53.39  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             CeEEEeeEecc-CCCEEEEEccCC-e-E--ee-----------cccCceEE-eeC--C--cEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSNN-T-V--IA-----------YVKDLRIA-LSN--G--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~dg-~-~--i~-----------~~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+.|.|...+. +...+.|++.+. . +  +.           ..++.... ...  +  +|.|.+++.+      |+|.
T Consensus         8 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------D~G~   81 (105)
T cd00099           8 SVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPE------DSAV   81 (105)
T ss_pred             CEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHH------HCEE
Confidence            39999999987 788999987432 1 1  11           01111111 111  3  7999888766      8999


Q ss_pred             EEEEEEcCCC
Q psy5697         119 YRCRASNEAG  128 (145)
Q Consensus       119 Y~C~A~N~~G  128 (145)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999999886

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.07  E-value=2.1e-05  Score=51.90  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEE-eeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~-~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.|.| +|...|+|+ +||+.+......... ..+|      +|.+.+   +   ...+...|+|.|.|+.-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~-kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~---~---~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWF-KNDKEIKDVKYLKEEDANRKTFTVSSTLDFRV---D---RSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEE-ECCEECcCceeeEeeCCCCCEEEEEEEEEEEc---c---cccCCCEEEEEEechhcC
Confidence            579999977 888999997 588876532211111 2233      333332   1   122456899999998554

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.07  E-value=6.4e-05  Score=50.39  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|.+++.+      |+|.|+|.+.|..|. ....+.++
T Consensus        66 sL~I~~v~~~------D~G~Y~C~v~~~~~~-~~~~i~l~   98 (100)
T cd05713          66 ALRIHNVRAS------DEGLYTCFFQSDGFY-EEATVELK   98 (100)
T ss_pred             EEEEEcCChh------hCEEEEEEEecCCcE-EEEEEEEE
Confidence            7999988765      899999999997765 44445444

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd00096 Ig Immunoglobulin domain

Probab=98.04  E-value=1.3e-05  Score=47.47  Aligned_cols=61  Identities=20%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc------CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~------~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.+.+.|.+.+.|++ ++.......      .........+|.|.++...      |.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~------d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLK-NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE------DSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEE-CCEECCCcccEEeccccCcceeEEEEEECccCcc------cCcEEEEEEecCcC
Confidence            4689999998999999985 444322111      0112233446888766543      89999999998873

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.03  E-value=3.9e-05  Score=52.16  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             CeEEEeeEeccC-CCEEEEEccC-CeE---eec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRYE-PSQLGWRFSN-NTV---IAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~P-~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .+.|.|.+.+.. ...+.|++.+ |+.   +..        .+..... ..++  +|.|.++..+      |+|.|.|.+
T Consensus        17 ~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~------Dsg~Y~Ca~   90 (106)
T cd04980          17 SATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE------DAAVYYCQQ   90 (106)
T ss_pred             CEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH------HCEEEEEEE
Confidence            399999998876 6889999753 221   110        0001111 1122  5889888765      899999999


Q ss_pred             EcCC
Q psy5697         124 SNEA  127 (145)
Q Consensus       124 ~N~~  127 (145)
                      .|..
T Consensus        91 ~~~~   94 (106)
T cd04980          91 YGTF   94 (106)
T ss_pred             eCCC
Confidence            8753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.01  E-value=8.1e-05  Score=52.21  Aligned_cols=67  Identities=10%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             ccCeEEEeeEecc----CCCEEEEEcc--------------CCeEee----cccCceEE-----eeCCcEEEcCCCCCCC
Q psy5697          58 RTRGLELTRQTRY----EPSQLGWRFS--------------NNTVIA----YVKDLRIA-----LSNGSLMFPPFPETGF  110 (145)
Q Consensus        58 ~~g~~L~C~a~G~----P~P~i~W~~~--------------dg~~i~----~~~~~~~~-----~~~GsL~i~~~~~~~~  110 (145)
                      ++.+.|.|..+..    +..+|+|.+.              +|+...    ..+++...     ..+.+|.|.+++.+  
T Consensus        13 G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~s--   90 (116)
T cd05879          13 GSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYT--   90 (116)
T ss_pred             CCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCcc--
Confidence            3449999997653    4579999332              233221    01111111     23458999998876  


Q ss_pred             CCCCCCeEEEEEEEcCCCce
Q psy5697         111 RPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~  130 (145)
                          |+|+|+|...|..+..
T Consensus        91 ----D~G~Y~C~v~n~p~~~  106 (116)
T cd05879          91 ----DNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ----cCEEEEEEEEcCCCcC
Confidence                8999999999997754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.00  E-value=7.5e-05  Score=49.44  Aligned_cols=62  Identities=11%  Similarity=0.052  Sum_probs=38.6

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.+ .+.|.++|+|+ ++|.++............     .+|.|.+-      .+.|-..|+|.|.|++=.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~-k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~------~eDdG~~~~C~a~~~~l~   69 (82)
T cd05883           2 IELNCTAMASKPAATIRWF-KGNKELTGKSTVEETWSRMFTVTSQLMLKVT------KEDDGVPVICLVDHPAVK   69 (82)
T ss_pred             EEEEEEecCCCCCCEEEEE-ECCEECcCcccceeccCCCcEEEEEEEEECc------hhhCCCEEEEEEcCcccC
Confidence            5789997 55788999998 477777532111111112     25666542      232566799999998643

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.99  E-value=0.00015  Score=49.46  Aligned_cols=35  Identities=14%  Similarity=0.343  Sum_probs=27.0

Q ss_pred             CCcEEEcCCCCCCCCCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy5697          97 NGSLMFPPFPETGFRPDVHSTVYRCRASN-EAGVILSRFVHVK  138 (145)
Q Consensus        97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N-~~G~~~s~~v~v~  138 (145)
                      +++|.|.+++.+      |+|.|+|...| +.|+ .+..+.+.
T Consensus        62 daSi~i~nl~~~------D~G~Y~C~v~t~P~g~-~~~~~~L~   97 (99)
T cd05886          62 DGTISLSRLELE------DEGVYICEFATFPTGN-RESQLNLT   97 (99)
T ss_pred             cceEEEcCCccc------cCEEEEEEEEeCCCCC-eEEEEEEE
Confidence            479999998766      89999999999 6775 44455444

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.94  E-value=0.00023  Score=49.64  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             CeEEEeeEeccC------------CCEEEEEcc-CCeE---ee----------cccCceEEe------eCCcEEEcCCCC
Q psy5697          60 RGLELTRQTRYE------------PSQLGWRFS-NNTV---IA----------YVKDLRIAL------SNGSLMFPPFPE  107 (145)
Q Consensus        60 g~~L~C~a~G~P------------~P~i~W~~~-dg~~---i~----------~~~~~~~~~------~~GsL~i~~~~~  107 (145)
                      .++|.|......            .+.|.|+|. .|+.   +.          ...++..+.      .+-+|.|.+++.
T Consensus         4 ~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl~~   83 (112)
T cd05900           4 SLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITELRS   83 (112)
T ss_pred             cEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeeccc
Confidence            389999976543            469999874 2311   11          111111111      234899998877


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +      |+|+|+|...+..... ..-.+.|.
T Consensus        84 s------DsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          84 N------DSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             c------cCEEEEEEEecCCCCceeEEEEEEE
Confidence            6      8999999999765554 33344444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.88  E-value=0.00022  Score=48.33  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             eEEEeeEeccC---CCEEEEEccC-C-e--Eee------------cccCceEE-----eeCCcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE---PSQLGWRFSN-N-T--VIA------------YVKDLRIA-----LSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P---~P~i~W~~~d-g-~--~i~------------~~~~~~~~-----~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.-.-.+   ..+|+|++.. | .  .+.            ...+....     ..+++|.|.+++.+      |+
T Consensus         3 v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~s------D~   76 (100)
T cd05888           3 TRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQA------DE   76 (100)
T ss_pred             EEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccc------cc
Confidence            78999875444   4589998743 2 1  111            00011111     12558999998776      89


Q ss_pred             eEEEEEEEc-CCCceEEEEEEEE
Q psy5697         117 TVYRCRASN-EAGVILSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N-~~G~~~s~~v~v~  138 (145)
                      |.|.|...| +.|.. ...+.++
T Consensus        77 GtY~C~v~~~p~g~~-~~~~~L~   98 (100)
T cd05888          77 GKYKCRVITFPAGNF-EAELVLT   98 (100)
T ss_pred             eEEEEEEEeCCCCCe-eeEEEEE
Confidence            999999999 56664 4455443

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.81  E-value=0.00026  Score=48.08  Aligned_cols=71  Identities=21%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             eEEEeeEecc-CCCEEEEEccCC---eEeecc----------c-CceEE-----eeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          61 GLELTRQTRY-EPSQLGWRFSNN---TVIAYV----------K-DLRIA-----LSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        61 ~~L~C~a~G~-P~P~i~W~~~dg---~~i~~~----------~-~~~~~-----~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +.|.|.-... ...+|+|.|.++   ..+...          + ..|..     ..+++|.|.++..+      |+|.|+
T Consensus         3 vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~------D~G~Y~   76 (96)
T cd05887           3 VTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFS------DIGVYI   76 (96)
T ss_pred             EEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcc------ccEEEE
Confidence            7899997542 345899987532   122100          0 01222     23669999998776      899999


Q ss_pred             EEE-EcCCCce-EEEEEEE
Q psy5697         121 CRA-SNEAGVI-LSRFVHV  137 (145)
Q Consensus       121 C~A-~N~~G~~-~s~~v~v  137 (145)
                      |.. +.+.|+. .+..+.|
T Consensus        77 C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          77 CKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEEeCCCCCeeEEEEEEE
Confidence            996 5568876 4444443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.77  E-value=8.5e-05  Score=51.17  Aligned_cols=60  Identities=12%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             eEEEeeEec--cCCCEEEEEccC-CeE----ee--c----------ccCceEE-eeC----CcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTR--YEPSQLGWRFSN-NTV----IA--Y----------VKDLRIA-LSN----GSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G--~P~P~i~W~~~d-g~~----i~--~----------~~~~~~~-~~~----GsL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|...+  .+.+.+.|++.. |..    +.  .          .+..... ...    -+|.|.+++.+      |+
T Consensus        16 v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------Ds   89 (116)
T cd04982          16 VTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE------DS   89 (116)
T ss_pred             EEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH------HC
Confidence            999999988  788999999742 221    10  0          0111111 111    26888888765      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      |.|.|.+...
T Consensus        90 g~Y~C~~~~~   99 (116)
T cd04982          90 ATYYCAYWES   99 (116)
T ss_pred             EEEEEEEecC
Confidence            9999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.73  E-value=0.00061  Score=47.03  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=39.7

Q ss_pred             eEEEeeEeccC----------CCEEEEEccC-CeEee-------------cccCceEEe-------eCCcEEEcCCCCCC
Q psy5697          61 GLELTRQTRYE----------PSQLGWRFSN-NTVIA-------------YVKDLRIAL-------SNGSLMFPPFPETG  109 (145)
Q Consensus        61 ~~L~C~a~G~P----------~P~i~W~~~d-g~~i~-------------~~~~~~~~~-------~~GsL~i~~~~~~~  109 (145)
                      ++|.|.....+          ...|.|++.+ ++...             ..++ |...       .+.+|.|.+++.+ 
T Consensus         5 V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~g-R~~~~~~~~~~~~asL~I~~l~~s-   82 (110)
T cd05878           5 VLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQG-RVSLPNYPENRGDASLEISRLRSS-   82 (110)
T ss_pred             EEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccC-eEEeccCCCCCCcEEEEECCCChh-
Confidence            89999987755          2679999753 22211             1111 2211       1237999988776 


Q ss_pred             CCCCCCCeEEEEEEEcCCC
Q psy5697         110 FRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~G  128 (145)
                           |+|+|.|......+
T Consensus        83 -----D~G~Y~C~v~~~~~   96 (110)
T cd05878          83 -----DSGVYRCEVMHGIE   96 (110)
T ss_pred             -----hCEEEEEEEEeCCC
Confidence                 89999999988543

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.73  E-value=0.00031  Score=48.59  Aligned_cols=27  Identities=19%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          98 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        98 GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+|.|.+++.+      |+|.|.|.+.|.-+..
T Consensus        80 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~  106 (116)
T cd05715          80 ASIVIHNLQFT------DNGTYTCDVKNPPDIV  106 (116)
T ss_pred             eEEEEeeCCcc------cCEEEEEEEEeCCCCC
Confidence            37999888766      8999999999986654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.72  E-value=0.00024  Score=48.71  Aligned_cols=63  Identities=5%  Similarity=-0.104  Sum_probs=37.8

Q ss_pred             eEEEeeEec-cCCCE--EEEEccCCeEeecccCc----eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTR-YEPSQ--LGWRFSNNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~--i~W~~~dg~~i~~~~~~----~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..|.|.+.| .|.++  |+|++ +++.+......    .......+|.+.+-      ++.|-..|+|.|.+.++.-
T Consensus        19 ~tL~C~v~g~~P~a~L~i~W~r-G~~~l~~~~~~~~~~~~~~~~stlt~~~~------r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          19 YTLQCDVPGVAPRQNLTVVLLR-GNETLSRQPFGDNTKSPVNAPATITITVD------REDHGANFSCETELDLRPE   88 (100)
T ss_pred             EEEEEEEcCcCCCCcEEEEEee-CCEEcccceeccccCCCceeEEEEEEecc------hhhCCcEEEEEEEeccCcc
Confidence            899999865 77787  79985 55665422100    01112235565432      2214448999999997753

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.70  E-value=0.00028  Score=47.13  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             eEEEeeEe-ccCCCEEEEEccCC----eEee-------------cccCceEEeeCC-----cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQT-RYEPSQLGWRFSNN----TVIA-------------YVKDLRIALSNG-----SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~-G~P~P~i~W~~~dg----~~i~-------------~~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|... ......+.|++.+.    ..+.             ...+......++     +|.|.+++.+      |+|
T Consensus        19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~------DsG   92 (114)
T PF07686_consen   19 VTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS------DSG   92 (114)
T ss_dssp             EEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG------GEE
T ss_pred             EEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC------cCE
Confidence            99999998 66778999987332    1111             001111222322     5999988766      899


Q ss_pred             EEEEEEEcCCCceEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      .|.|.....-.......+.|
T Consensus        93 ~Y~C~v~~~~~~~~~~~~~L  112 (114)
T PF07686_consen   93 TYFCQVSTSNEQSFGNGTKL  112 (114)
T ss_dssp             EEEEEEEESSEEEEEEEEEE
T ss_pred             EEEEEEEECCCCEECCcEEE
Confidence            99999998833333334443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.68  E-value=0.00036  Score=48.48  Aligned_cols=27  Identities=22%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          97 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.+|.|.+++.+      |+|+|.|.+.|..+.
T Consensus        78 ~~sL~I~~v~~~------D~G~Y~C~v~~~~~~  104 (115)
T cd05880          78 DASILIWQLQPT------DNGTYTCQVKNPPDV  104 (115)
T ss_pred             ceEEEEeeCChh------hCEEEEEEEEeCCCC
Confidence            347999988776      899999999998664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.66  E-value=0.00028  Score=47.24  Aligned_cols=61  Identities=10%  Similarity=0.087  Sum_probs=39.1

Q ss_pred             CeEEEeeEecc--CCCEEEEEccCC--eE--ee-c-------cc-CceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSNN--TV--IA-Y-------VK-DLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~dg--~~--i~-~-------~~-~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+.|.|...+.  ....+.|++.+.  .+  +- .       .. +.......+  +|.|.+++.+      |+|+|.|.
T Consensus         8 ~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~------Dsg~Y~C~   81 (98)
T cd04984           8 TVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTE------DEADYYCQ   81 (98)
T ss_pred             CEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChh------hCEEEEEE
Confidence            39999999876  667899987542  11  11 0       00 111111222  6899888765      89999999


Q ss_pred             EEcC
Q psy5697         123 ASNE  126 (145)
Q Consensus       123 A~N~  126 (145)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            9865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.65  E-value=0.00098  Score=46.96  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=26.7

Q ss_pred             CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          97 NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +-+|.|.+++.+      |+|.|+|...+..... ..-.+.|.
T Consensus        78 ~asL~i~~v~~s------D~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRAS------DAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccc------cCEEEEEEEEECCcccEEEEEEEEE
Confidence            348999988766      8999999999887654 33345554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.62  E-value=0.00035  Score=45.73  Aligned_cols=62  Identities=23%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             CeEEEee-EeccCCCEEEEEccCCeEeeccc-CceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTR-QTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+.+.|. ..|+|+|.|+|+. ++..+.... .......+|      +|.+.+ .     ...+...++|.|.|..-
T Consensus        16 ~~~~~C~s~~~~P~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~-~-----~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   16 EVTLTCSSSGGYPPPQITWYL-DGGPVVASNTTQSSSPDNGLFTVSSTLTLTP-T-----REDHGKTLTCRASHPAL   85 (89)
T ss_dssp             EEEEEEEEEEEBS-EEEEEEE-TTCEECEEEEEEEEETTTTTEEEEEEEEEET-T-----GGGTTEEEEEEEEETTC
T ss_pred             EEEEEEEeCCeECCeEEEEEE-CCCceeeeeeeeeeccCCCcceEEEEEEEEc-C-----hHHCCeEEEEEEECCcc
Confidence            3899996 5899999999985 555541110 011122222      344432 1     12256779999999853

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.57  E-value=0.00085  Score=44.73  Aligned_cols=62  Identities=11%  Similarity=0.155  Sum_probs=36.3

Q ss_pred             CeEEEeeEecc-CCC-EEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTRY-EPS-QLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+.|.|.|.|. |++ .|+|+ ++|+......  .......+|+..+.   .+...      +.+.|.|.+.+..-
T Consensus        16 ~~~L~C~a~gF~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~------~~~~ytC~V~H~~~   84 (93)
T cd07698          16 SLTLSCHATGFYPRDIEVTWL-RDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE------DKARYSCRVEHSGL   84 (93)
T ss_pred             cEEEEEEEEEEeCCCcEEEEE-ECCEECcccccccceEECCCCeEEEEEEEEECCC------CCCEEEEEEEeCCC
Confidence            48999999996 544 89997 4775322111  01122345543332   12221      57899999987643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.55  E-value=0.0014  Score=44.52  Aligned_cols=72  Identities=21%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCe---Eeec----------ccC-ceEEe-----eCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNT---VIAY----------VKD-LRIAL-----SNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~---~i~~----------~~~-~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ++.|.|.-.. ....+|+|.|.++.   .+..          .+- .|...     .+.+|.|.+++.+      |+|.|
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~------D~G~Y   75 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEE------DVGLY   75 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcc------cCEEE
Confidence            4789999642 24678999875431   1211          010 12221     3579999998776      89999


Q ss_pred             EEEEEcC-CCceEEEEEEEE
Q psy5697         120 RCRASNE-AGVILSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~-~G~~~s~~v~v~  138 (145)
                      +|...+- .|+. .+.+.|.
T Consensus        76 ~C~~~t~P~g~~-~~~i~~~   94 (96)
T cd05889          76 CCSLVTYPQGSW-EKVIEVV   94 (96)
T ss_pred             EEEEEeCCCCCe-EEEEEEE
Confidence            9999776 5554 4555543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.53  E-value=0.00055  Score=45.91  Aligned_cols=70  Identities=14%  Similarity=0.080  Sum_probs=41.2

Q ss_pred             CCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.+...|...+..|  ++|.|.+.- +.-.+.|+| +|...... ......   ....+.|.+++.+      |+|+|+
T Consensus         1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k-~g~~~~~~-~~~~~~~~~~~a~f~I~~~~~~------~~G~Y~   71 (94)
T cd05711           1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYK-EGRSKPVL-HLYEKHHGGFQASFPLGPVTPA------HAGTYR   71 (94)
T ss_pred             CCEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEE-CCCCCCce-ecccccCCeEEEEEEecCCCcc------cCEEEE
Confidence            355555555433333  999998765 567899986 44321100 000000   1126788877665      899999


Q ss_pred             EEEE
Q psy5697         121 CRAS  124 (145)
Q Consensus       121 C~A~  124 (145)
                      |...
T Consensus        72 C~~~   75 (94)
T cd05711          72 CYGS   75 (94)
T ss_pred             EEEE
Confidence            9975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.50  E-value=0.0012  Score=45.95  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +|.|.+++.+      |+|+|+|......
T Consensus        73 sL~i~nv~~~------D~G~Y~C~v~~g~   95 (110)
T cd05902          73 SLVLSRLRYS------DSGTYRCEVVLGI   95 (110)
T ss_pred             EEEECCCCHH------HCEEEEEEEEECC
Confidence            8999988776      8999999999854

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.46  E-value=0.0018  Score=43.30  Aligned_cols=64  Identities=20%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             eEEEeeEeccCC-CEEEEEccCCe---Eee-c-----------ccCceEE----eeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          61 GLELTRQTRYEP-SQLGWRFSNNT---VIA-Y-----------VKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        61 ~~L~C~a~G~P~-P~i~W~~~dg~---~i~-~-----------~~~~~~~----~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ++|.|.-..... -.|+|++.++.   .+. .           .++....    ..+.+|.|.+++.+      |+|.|.
T Consensus         4 vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~------D~G~Y~   77 (97)
T cd05846           4 VTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLE------DEGCYK   77 (97)
T ss_pred             EEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCcee------eeEEEE
Confidence            899998654333 26999875432   111 0           0111111    12347999998776      899999


Q ss_pred             EEEEcC-CCce
Q psy5697         121 CRASNE-AGVI  130 (145)
Q Consensus       121 C~A~N~-~G~~  130 (145)
                      |...+- .|+.
T Consensus        78 C~~~~~p~g~~   88 (97)
T cd05846          78 CIFNTFPDGSK   88 (97)
T ss_pred             EEEEeCCCCCe
Confidence            997744 5554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.37  E-value=0.00085  Score=46.23  Aligned_cols=61  Identities=15%  Similarity=0.032  Sum_probs=38.4

Q ss_pred             CeEEEeeEecc-CCCEEEEEccC-CeE---ee--------cccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSN-NTV---IA--------YVKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~d-g~~---i~--------~~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+.|.|...+. ....+.|++.+ +..   +-        ..++....   ...+  +|.|.++..+      |+|.|.|
T Consensus        16 ~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~------Dsg~Y~C   89 (116)
T cd07706          16 EVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE------DSAKYFC   89 (116)
T ss_pred             CEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH------HCEEEEE
Confidence            39999998764 56789999753 221   10        01111111   1122  6899888665      8999999


Q ss_pred             EEEcC
Q psy5697         122 RASNE  126 (145)
Q Consensus       122 ~A~N~  126 (145)
                      .+.+.
T Consensus        90 ~~~~~   94 (116)
T cd07706          90 ALSTL   94 (116)
T ss_pred             EEECC
Confidence            99853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.35  E-value=0.0016  Score=43.43  Aligned_cols=64  Identities=9%  Similarity=0.109  Sum_probs=40.2

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCe----Ee-------ecccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNT----VI-------AYVKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~----~i-------~~~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|.... .....+.|++.+..    .+       ...++.....   .++  +|.|.+++.+      |+|.|.|.
T Consensus         9 ~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~   82 (98)
T cd05716           9 SVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKE------DAGWYWCG   82 (98)
T ss_pred             eEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHH------HCEEEEEE
Confidence            3899999765 46778999975421    11       0111111221   133  6888888765      89999999


Q ss_pred             EEcCCCc
Q psy5697         123 ASNEAGV  129 (145)
Q Consensus       123 A~N~~G~  129 (145)
                      +.+....
T Consensus        83 ~~~~~~~   89 (98)
T cd05716          83 VGDDGDQ   89 (98)
T ss_pred             cccCCCc
Confidence            9876543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.34  E-value=0.0027  Score=42.72  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=37.2

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeecc--cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYV--KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~--~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ++|.|.|.| +|.. +++|+ +||+.+...  ........+|+..+...-.-  ... ....|.|.+.-..
T Consensus        17 ~~L~C~~~gFyP~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~--~~~-~~~~ysC~V~H~~   83 (94)
T cd05766          17 HLLVCHVWGFYPPEITVKWF-KNGQEETEGVVSTELIPNGDWTYQILVMLET--TPS-RGDTYTCVVEHSS   83 (94)
T ss_pred             eEEEEEEeeecCCCCEEEEE-ECCeecCCCceecceEECCCCcEEEEEEEEE--cCC-CCCEEEEEEEeCC
Confidence            899999999 6655 78997 588876532  11112234555554321110  011 3568999997654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.30  E-value=0.0017  Score=41.54  Aligned_cols=62  Identities=13%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             eEEEeeEecc-CC-CEEEEEccCCeEeecccC-c-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVKD-L-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~-~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|.|. |+ ..|+|++ ||+++..... . .....+|+..+..   +...   ...+...|.|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~---~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLR-NGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAS---TWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEE-CCEECCCCEEECceEECCCCCEEEEEEEEEccc---cCCCCCEEEEEEEEc
Confidence            6799999996 54 6899974 8886432110 0 1122455444322   1111   111457899999765

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.15  E-value=0.0029  Score=43.11  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             eEEEeeEeccC-CCEEEEEccCCe----Eee-----c------------ccCceE-EeeCC---cEEEcCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE-PSQLGWRFSNNT----VIA-----Y------------VKDLRI-ALSNG---SLMFPPFPETGFRPDV  114 (145)
Q Consensus        61 ~~L~C~a~G~P-~P~i~W~~~dg~----~i~-----~------------~~~~~~-~~~~G---sL~i~~~~~~~~~~~~  114 (145)
                      ++|.|.+.+.. ...+.|++.+..    .+.     .            .++... ...++   +|.|.++..+      
T Consensus         9 vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------   82 (107)
T cd07700           9 VKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPE------   82 (107)
T ss_pred             EEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHH------
Confidence            99999998754 468999975432    100     0            011111 11222   5899888665      


Q ss_pred             CCeEEEEEEEcC
Q psy5697         115 HSTVYRCRASNE  126 (145)
Q Consensus       115 d~G~Y~C~A~N~  126 (145)
                      |+|.|.|...+.
T Consensus        83 Dsg~YyCa~~~~   94 (107)
T cd07700          83 DSGTYFCMTVGS   94 (107)
T ss_pred             HCEEEEEeEcCC
Confidence            899999998744

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.12  E-value=0.00068  Score=53.78  Aligned_cols=50  Identities=24%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          71 EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        71 P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ..|++.|...||..+...+ ...+-+.|.|++.++.++      ++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~-~~nIT~TG~L~~~~F~es------mSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNS-YVNITETGKLMFKNFQES------MSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCC-eEEEccCceEEeeccccc------cCCceEEEEEEEe
Confidence            4699999988888886543 346778999999988765      8999999988654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.07  E-value=0.0061  Score=41.10  Aligned_cols=59  Identities=12%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeecccC--ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVKD--LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~--~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.|.| +|. -+++|+ +||+.+...-.  ......+|+..+..   +.+.      +...|.|.+.=+
T Consensus        18 ~tL~C~a~gFyP~~I~v~W~-~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~------~~~~ytC~V~H~   83 (94)
T cd05767          18 NTLICFVDNFFPPVLNVTWL-KNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPE------EGDIYSCIVEHW   83 (94)
T ss_pred             eEEEEEEEEEECCcCEEEEE-ECCeEccCceEEeeeEeCCCCcEEEEEEEEEECC------CCCeEEEEEEeC
Confidence            799999999 664 468997 58887643110  11223455444321   1111      356899999654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.99  E-value=0.0078  Score=41.81  Aligned_cols=78  Identities=9%  Similarity=-0.003  Sum_probs=42.8

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeecccCceEEeeC-CcEEEc---CCCCCCCCCCCCCe-EEEEEEEcCCC-ceEE
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVKDLRIALSN-GSLMFP---PFPETGFRPDVHST-VYRCRASNEAG-VILS  132 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~~~~~~~~-GsL~i~---~~~~~~~~~~~d~G-~Y~C~A~N~~G-~~~s  132 (145)
                      ++|.|.|.| +|+ -+|+|+ +||+.+........-..+ |+..+.   .+...    +.|.| .|.|.+....- ..+.
T Consensus        24 ~tL~C~a~gF~P~~i~v~W~-kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~----~~d~~~~ytC~V~H~~l~~p~~   98 (111)
T cd05772          24 VNFTCSAHGFSPRDITVKWL-KNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT----EDDVHSQVTCEVQHRTLQAPLR   98 (111)
T ss_pred             EEEEEEEeeEeCCCCEEEEE-ECCEECcccccceeeCCCCCcEEEEEEEEEECc----cccccCceEEEEEeCCCCCCeE
Confidence            899999988 454 489997 588887532111111223 233321   11222    11344 49999988743 3355


Q ss_pred             EEEEEEeccCC
Q psy5697         133 RFVHVKADSRI  143 (145)
Q Consensus       133 ~~v~v~~~~~~  143 (145)
                      +.+.+.-..+.
T Consensus        99 ~~~~~~~~~~~  109 (111)
T cd05772          99 GTYNLSQALRV  109 (111)
T ss_pred             EEEEcccEEEc
Confidence            55555544433

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.93  E-value=0.0062  Score=41.12  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=35.3

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ..+.|.+ .|+|.++|+|++.-......   ......+|      +|.+.+-      .+.|--.|+|+|.|..-.
T Consensus        18 ~va~C~s~~gkP~a~ItW~~~~~~~~~~---~~~~~~~g~~tv~S~l~~~p~------~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          18 TVATCVSANGKPPATISWETTLGGEAET---QSKENPNGTVTVTSEYRLVPS------REANGKELTCVVSHPTLQ   84 (95)
T ss_pred             EEEEEECCCCcCCCEEEEEeCCCCccee---EeecCCCCCEEEEEEEEEecC------HHHCCCEEEEEEeCcccC
Confidence            7899997 79999999998521111110   11122344      3444332      121445799999998644

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.90  E-value=0.0046  Score=41.96  Aligned_cols=63  Identities=11%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             eEEEeeEec-cC-CCEEEEEccCCeEeeccc--CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTR-YE-PSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G-~P-~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.|.| +| .-+|+|+ +||+.+....  .......+|+..+..   +..+++   .+...|.|.+.-+.
T Consensus        20 ~~L~C~~~gfyP~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w---~~~~~~sC~V~H~~   89 (100)
T cd07699          20 ATLVCLINDFYPGFATVQWK-VDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW---NKHKVYTCEVTHEG   89 (100)
T ss_pred             cEEEEEEEeEECCCCEEEEE-ECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh---CCCCeEEEEEEecC
Confidence            899999999 66 4578997 5888864211  111223466555432   122211   13568999997663

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.89  E-value=0.0053  Score=38.55  Aligned_cols=56  Identities=14%  Similarity=0.186  Sum_probs=34.0

Q ss_pred             eEEEeeEeccCCC--EEEEEccCC-eE---eec------------ccCceEEee---CC--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNN-TV---IAY------------VKDLRIALS---NG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg-~~---i~~------------~~~~~~~~~---~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|...+...+  .+.|++... ..   +..            ..+......   .+  +|.|.+++.+      |+|
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~------D~G   75 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVE------DTG   75 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHH------HCE
Confidence            6799998776654  899986431 11   110            011111111   22  6889888765      899


Q ss_pred             EEEEE
Q psy5697         118 VYRCR  122 (145)
Q Consensus       118 ~Y~C~  122 (145)
                      .|.|.
T Consensus        76 ~Y~C~   80 (81)
T smart00406       76 TYYCA   80 (81)
T ss_pred             EEEEc
Confidence            99995

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.83  E-value=0.015  Score=39.02  Aligned_cols=57  Identities=14%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             cCeEEEeeEec--cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          59 TRGLELTRQTR--YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        59 ~g~~L~C~a~G--~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ..++|.|.+..  .|.|.|+|+...++....     ......+|.+..+...      |+|++.|..+-.
T Consensus        15 ~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----~~~~~ktL~~~qv~~q------dSG~WtC~V~~~   73 (88)
T cd07694          15 TNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----LNQDKKTLNLVQLGPN------DSGTWDCIVSVN   73 (88)
T ss_pred             CcEEEEEecCCCCCCCccEEEeCCCCcccee-----ccCCccEEEeceeCcc------cCCEEEEEEEEC
Confidence            34899999844  445599997544332211     1123447888777654      899999999644

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.78  E-value=0.0056  Score=41.46  Aligned_cols=59  Identities=12%  Similarity=0.237  Sum_probs=34.0

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      ..+.|.+ .|.|.++|+|++..+.....   ......+|      .|.+.+-      .+.|--.|.|.|+|..-
T Consensus        18 ~va~C~s~~gkPaa~IsW~~~~~g~~~~---~~~~~~~gt~tv~S~l~~~P~------~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          18 PVAKCVSANGRPPARISWSSTLGGNANT---TSKENGDGTVTVTSEYSLVPT------PEANGKEVTCKVEHETL   83 (95)
T ss_pred             EEEEEEcCCCCCCcEEEEEcCCCCCeeE---EEEeCCCCCEEEEEEEEEecC------HHHCCCEEEEEEeCccc
Confidence            7899985 69999999998531111110   11122334      3444321      22245579999999853

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.77  E-value=0.0045  Score=41.87  Aligned_cols=65  Identities=8%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             CeEEEeeEecc--CC-CEEEEEccCCeEeecccCceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRY--EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~--P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .++|.|.|+|.  |+ -.|+|++.++..............+|+..+..   +.++++   .+.-.|.|.+.-+.
T Consensus        16 ~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w---~~g~~ysC~V~H~~   86 (96)
T cd07696          16 SVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDW---ISGDTFQCKVTHPD   86 (96)
T ss_pred             CeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHc---cCCCcEEEEEECCC
Confidence            38999999999  54 36899864344332111112334566655543   222211   02346999997663

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.73  E-value=0.0097  Score=40.42  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             eEEEeeEeccCCCEEEEEccC-C---eE--ee-ccc------------CceEE--eeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-N---TV--IA-YVK------------DLRIA--LSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g---~~--i~-~~~------------~~~~~--~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      ++|.|...+.-...+.|++.+ |   .+  +- ...            ..+..  ....  +|.|.+++.+      |+|
T Consensus         9 vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s------Dsg   82 (104)
T cd05720           9 VELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE------NEG   82 (104)
T ss_pred             EEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH------HCE
Confidence            899999876656779999754 3   11  11 000            01111  1122  6899888765      899


Q ss_pred             EEEEEEEcC
Q psy5697         118 VYRCRASNE  126 (145)
Q Consensus       118 ~Y~C~A~N~  126 (145)
                      +|.|...+.
T Consensus        83 tY~Ca~~~~   91 (104)
T cd05720          83 YYFCSVASN   91 (104)
T ss_pred             EEEEEEccC
Confidence            999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.66  E-value=0.0087  Score=45.41  Aligned_cols=74  Identities=12%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEee----------cccCceEEe-----eCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIA----------YVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~----------~~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .+.|.|.- .+...++|+|+|.++....          +..+ +..+     .+-+|.|.++..+      |+|.|.|..
T Consensus        32 ~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~-Rve~mS~s~~~StItIknVt~s------DeGcY~C~F  104 (189)
T PHA02987         32 NVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKN-KIEYLSKSFNESTILIKNVSLK------DNGCYTCIF  104 (189)
T ss_pred             CEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcC-eEEEeccCCCcceEEEEeCChh------hCeEEEEEE
Confidence            39999997 4778899999875432211          1111 2211     3458999988766      899999987


Q ss_pred             EcC-CC-ce-EEEEEEEEec
Q psy5697         124 SNE-AG-VI-LSRFVHVKAD  140 (145)
Q Consensus       124 ~N~-~G-~~-~s~~v~v~~~  140 (145)
                      .-- .| .. ....++|.+.
T Consensus       105 ~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        105 NTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EecCCCCCceeEEEEEEEch
Confidence            432 45 22 3335555543

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.65  E-value=0.0097  Score=41.31  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=18.6

Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +|.|.+++.+      |+|+|.|.....
T Consensus        81 sL~I~~l~~~------Dsg~Y~C~~~~~  102 (119)
T cd05712          81 SLLISDAQPE------DSGKYFFRVELG  102 (119)
T ss_pred             EEEEccCChh------hCeEEEEEEEcC
Confidence            7999988766      899999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.55  E-value=0.0098  Score=41.34  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=37.1

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-C-eE--ee---c----------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-N-TV--IA---Y----------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g-~~--i~---~----------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|...+.-  ...+.|++.. | .+  +-   .          .++.... ...  .  +|.|.++..+      |
T Consensus        14 ~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------D   87 (117)
T cd04981          14 SLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE------D   87 (117)
T ss_pred             CEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH------H
Confidence            399999987644  5679999753 2 22  10   0          0111111 111  2  5888887766      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +|+|.|.+...
T Consensus        88 sa~YyCa~~~~   98 (117)
T cd04981          88 TAVYYCARGLG   98 (117)
T ss_pred             CEEEEEEEEcC
Confidence            99999998753

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.42  E-value=0.022  Score=38.30  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.|.| +|+ -.|+|+ +||+.+.... .......+|+..+..   +...      +...|.|.+.=.
T Consensus        18 ~~L~C~a~gFyP~~i~v~W~-~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~------~~~~ysC~V~H~   82 (93)
T cd05770          18 NVLNCYVTGFHPPDIEIRLL-KNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPT------KGDEYACRVRHN   82 (93)
T ss_pred             eEEEEEEEEEeCCCCEEEEE-ECCEECCCcEECcEEECCCCCEEEEEEEEECCC------CCCeEEEEEEEC
Confidence            589999999 554 367997 5998875211 111234456655432   2222      466799999653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.35  E-value=0.0085  Score=40.87  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             CeEEEeeEeccCCC--EEEEEccCCeEee
Q psy5697          60 RGLELTRQTRYEPS--QLGWRFSNNTVIA   86 (145)
Q Consensus        60 g~~L~C~a~G~P~P--~i~W~~~dg~~i~   86 (145)
                      .+.|.|.|+|.-++  .++|+ +||+++.
T Consensus        18 ~~tL~C~a~gFyP~~i~v~W~-k~g~~~~   45 (102)
T cd05768          18 TATLTCLVKGFSPSDIFVKWL-QNGQPLS   45 (102)
T ss_pred             ceEEEEEEeeEeCCCCEEEEE-ECCEECC
Confidence            39999999995444  56997 5888764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.27  E-value=0.02  Score=36.62  Aligned_cols=46  Identities=17%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +.|.|.+.    -+|+|++  |..+....       +-+|-+....+.      ..|.|+|.++|
T Consensus         9 V~L~C~~~----tsi~W~k--G~~~~~~~-------~~tlnLGs~~~D------PRG~Y~C~~s~   54 (69)
T cd07691           9 VFLKCNGA----TNITWKK--GKEILEVS-------NTLLDLGSRIND------PRGTYSCKESE   54 (69)
T ss_pred             EEEEecCC----CcEEEec--Cccccccc-------ccEEeccCcccC------CCcceEecCcc
Confidence            89999762    5599975  55543221       334444433222      58999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.17  E-value=0.027  Score=37.83  Aligned_cols=65  Identities=9%  Similarity=0.167  Sum_probs=37.0

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeecc-cC-ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYV-KD-LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~-~~-~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.|.| +|. -+|+|+ +||+.+... .. ......+|+..+..   +..+++   .+...|.|.+..+..+
T Consensus        17 ~~L~C~a~gFyP~~I~vtW~-~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w---~~~~~ytC~V~H~~~~   88 (94)
T cd05847          17 IQLLCLISGYTPGTIEVEWL-VDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW---KSGKTYTCKVTHQGTT   88 (94)
T ss_pred             EEEEEEEEeEECCCCEEEEE-ECCEECcCceeecccEECCCCcEEEEEEEEEchHHh---cCCCeEEEEEEECCee
Confidence            889999999 564 478997 588875321 10 11223344443322   112211   1356899999876544

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02633 hypothetical protein; Provisional

Probab=95.95  E-value=0.019  Score=36.05  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=26.3

Q ss_pred             eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        96 ~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ..+.|.|.|+..+      |+|.|.|+.+|+-=.. .+..+.|.
T Consensus        16 ~~~nLwilpa~~s------DSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQS------DSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccc------cCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            3458999988765      8999999999874333 44455554

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.86  E-value=0.037  Score=35.78  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=35.9

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeecccCce--EEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVKDLR--IALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~~~~--~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.|.| +|.. .|+|+ +||..+.......  ....+|+..+..   +...      +...|.|.+..+..
T Consensus        11 ~~L~C~v~~f~P~~i~v~W~-~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~------~~~~ysC~V~H~~l   78 (83)
T PF07654_consen   11 VTLTCLVSGFYPKDITVTWL-KNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWN------SGDEYSCRVTHESL   78 (83)
T ss_dssp             EEEEEEEEEEBSSTEEEEEE-ETTEEETTTEEEEEEEEETTSEEEEEEEEEEETT------TTGGEEEEEEETTS
T ss_pred             EEEEEEEEEEECCCcEEEEE-eccceeeeeeeecccccccccceeeeEEEEecCC------CCCEEEEEEEECCC
Confidence            899999998 5544 69997 5787764321111  113456433321   1111      35579999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.80  E-value=0.046  Score=38.22  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=19.8

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEee
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIA   86 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~   86 (145)
                      +.|.|.|.| +|.. +|+|+ +||+.+.
T Consensus        21 ~tL~Cla~gFyP~~I~V~W~-kng~~l~   47 (115)
T cd05769          21 ATLVCLATGFYPDHVSLSWK-VNGKEVT   47 (115)
T ss_pred             cEEEEEEEeEeCCCcEEEEE-ECCEECC
Confidence            899999999 4553 78997 4887765

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG1480|consensus

Probab=95.73  E-value=0.0038  Score=55.95  Aligned_cols=70  Identities=21%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             eEEEee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      ..+.|+ ..|.|.-.++|+ ++|..++... ......++.|.+.++...      |+|.|+|+|.|-++.-.+-.+.|.
T Consensus       147 ~~l~cr~pe~~paae~~w~-k~e~~~~pd~-n~~~~~d~~li~~~arls------d~~nytc~a~ni~~~r~~~~~~v~  217 (909)
T KOG1480|consen  147 LQLPCRPPEGDPKAEVEWL-KNEVVIDPDA-NVIRASDHNLIISQARLS------DSGNYTCEATNIVAKRKSDPATVQ  217 (909)
T ss_pred             ccccccCcccchhhhhhcc-ccCCCCCccc-cchhhhcCCccccchhhh------hcccceeeeehhhccccccceEEE
Confidence            567777 699999999997 5776665422 223455778998877654      899999999999998755544443

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.64  E-value=0.019  Score=38.86  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=19.5

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEee
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIA   86 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~   86 (145)
                      ++|.|.|+| +|.. +|+|+ +||+.+.
T Consensus        19 ~tL~C~a~gFyP~~I~v~W~-kng~~~~   45 (96)
T cd07697          19 GIYLCLLENFFPDVIQVHWR-EGNSPSI   45 (96)
T ss_pred             EEEEEEEEEEeCCCeEEEEE-ECCEECc
Confidence            899999999 5643 57996 5888754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.60  E-value=0.083  Score=36.08  Aligned_cols=64  Identities=8%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             CeEEEeeEec-c-CC-CEEEEEccCCeEeecccCceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTR-Y-EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G-~-P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .++|.|.+.| + |. -.|+|. .||+. ...........+|+..+..   +..+++.   ....|.|.+..+.-
T Consensus        21 ~atLtClV~~f~~P~~i~V~W~-~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~---~g~~ytC~V~H~~l   90 (99)
T cd04986          21 SASLTCTLSGLRDPEGAVFTWT-PSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWN---KGEPFACTVTHPEG   90 (99)
T ss_pred             ccEEEEEEeccCCCCCeEEEEE-ECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhc---CCCeEEEEEECCCc
Confidence            3899999999 4 53 479997 46554 2111111223466544443   2233221   12359999987743

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.51  E-value=0.051  Score=34.41  Aligned_cols=48  Identities=19%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ++|.|...+..   |.|.+ |++.+..        .+..+...+..       .+.|.|+|.+.+..
T Consensus        10 VtlTCP~~~~~---i~W~~-n~~~~~g--------~~~~~~~~~~~-------e~~G~Y~C~~~~~~   57 (65)
T cd07692          10 VTVTCPLSGDD---IKWKK-NDQVSQG--------SDEKYLSLNHF-------SSSGYYHCTADNAN   57 (65)
T ss_pred             EEEECCCCCCC---ceEEe-CCccCCC--------CCceEEeeccC-------CCCceEEEEeCCCc
Confidence            89999754322   99975 5443321        11233333332       26999999997654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03376 BARF1; Provisional

Probab=95.18  E-value=0.12  Score=39.69  Aligned_cols=63  Identities=16%  Similarity=0.090  Sum_probs=38.7

Q ss_pred             cCeEEEeeEe---ccCCCEEEEEcc---CCeE-ee-----------cccCceE-EeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          59 TRGLELTRQT---RYEPSQLGWRFS---NNTV-IA-----------YVKDLRI-ALSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        59 ~g~~L~C~a~---G~P~P~i~W~~~---dg~~-i~-----------~~~~~~~-~~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.++|.|.-.   -.+.-.|+|+|.   +.+. +.           ...+... +..+|  +|.|.+++.+      |.|
T Consensus        27 Eda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lS------DdG  100 (221)
T PHA03376         27 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS------HDG  100 (221)
T ss_pred             CcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeec------CCc
Confidence            3489999843   226778999872   1111 11           1111122 22334  7999998877      899


Q ss_pred             EEEEEEEcCC
Q psy5697         118 VYRCRASNEA  127 (145)
Q Consensus       118 ~Y~C~A~N~~  127 (145)
                      .|+|.-+-.-
T Consensus       101 tY~C~fQkge  110 (221)
T PHA03376        101 NYLCRMKLGE  110 (221)
T ss_pred             eEEEEEEcCC
Confidence            9999987653

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.98  E-value=0.11  Score=34.96  Aligned_cols=24  Identities=13%  Similarity=0.044  Sum_probs=18.6

Q ss_pred             CeEEEeeEec-cCC-CEEEEEccCCeE
Q psy5697          60 RGLELTRQTR-YEP-SQLGWRFSNNTV   84 (145)
Q Consensus        60 g~~L~C~a~G-~P~-P~i~W~~~dg~~   84 (145)
                      .++|.|.|.| +|. -+|+|+ +||+.
T Consensus        18 ~~~L~C~a~gFyP~~i~vtW~-k~g~~   43 (95)
T cd04985          18 SVTLGCLATGFLPEPVTFTWN-SGSNS   43 (95)
T ss_pred             cEEEEEEEeeEECCCcEEEEe-ECCEE
Confidence            3899999999 553 367996 58876

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=94.95  E-value=0.045  Score=46.95  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=44.3

Q ss_pred             eEEEeeEeccCCCEEEEEc--cCCeEeecccCc----eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRF--SNNTVIAYVKDL----RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~--~dg~~i~~~~~~----~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .++.|.+.|.|.|.|+|.+  .|++.+...+..    -.+-.-+.|+|-+....      |+|.|.|.|.|.+|..
T Consensus       214 cS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~------~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  214 CSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQA------DAGWYTCSARCGAGFL  283 (560)
T ss_pred             hcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhc------CCCceeecccccccee
Confidence            7899999999999999974  244333221211    11223457888764332      7999999999999976

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.36  E-value=0.89  Score=31.56  Aligned_cols=64  Identities=19%  Similarity=0.350  Sum_probs=41.4

Q ss_pred             eccCCCE--EEEEccCCeEeecc---c-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          68 TRYEPSQ--LGWRFSNNTVIAYV---K-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        68 ~G~P~P~--i~W~~~dg~~i~~~---~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      ..++...  ++|.  ++......   . +......+.+|.|..++.+      |+|.|.=..+|.-|.+-...+.|..
T Consensus        37 ~s~~~~~~IltW~--n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~q------DSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   37 PSQKKFEVILTWK--NDSTPSYNSSFNNRFNFTSENLALLIKAAQPQ------DSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TSSSEEE-EEEEE--TTEEEESSTTHHHHEEEETTTTEEEESS-SGG------G-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ccCCceEEEEEEc--CCCcccccccccceEeeeccCceEEEeecCcc------cCceEEEEEEcCCCcEEEEEEEEEe
Confidence            3666665  6773  44432211   1 1123456779999988766      8999999999999999777766653

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3515|consensus

Probab=94.06  E-value=0.066  Score=48.30  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=41.5

Q ss_pred             eEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697          61 GLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus        61 ~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~  133 (145)
                      +.|.|.+.|+|+ +.+.|++.+ +...   ..+....+-+|......+.      ..+.|.|.|.|+.|.....
T Consensus        25 v~l~C~v~~~pp~~~~eW~h~~-~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~c~a~ns~~~~~~~   88 (741)
T KOG3515|consen   25 VPLPCRVNSNPPEIDVEWYHST-SGEH---GRYATIADPTLVTTGDVRD------TVAELNCRAFNSVGMPSRC   88 (741)
T ss_pred             ceeeeecCCCCCCcceEEEecC-cccc---cccccccCCceeeecchhh------hhhhhhhhhcccccCceec
Confidence            899999977775 689998644 3322   2234445556666543322      5788999999997765433

>PHA03376 BARF1; Provisional

Probab=92.25  E-value=0.59  Score=35.94  Aligned_cols=67  Identities=10%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeE-eec-ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTV-IAY-VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~-i~~-~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..+.|...|.|.|.++|....|.. ... ..+....-.+|+|.+.--. +  ...-..=..+|+.+|....+
T Consensus       142 ~~i~C~sggfP~P~~~Wle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~  210 (221)
T PHA03376        142 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDL-S--LPKPWHLPVTCVGKNDKEEA  210 (221)
T ss_pred             eEEEEecCCcCCchheeccccCCCCCCccccCceeecCCCcEEEEEEe-e--cCCCccCceEEeccCchhhh
Confidence            678999999999999998544432 111 1122344567776653110 0  00113555789999886554

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=91.80  E-value=1.2  Score=31.20  Aligned_cols=58  Identities=12%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             CeEEEeeEeccCCC---EEEEEcc-CCeEee-------------cccC-ce--EEeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELTRQTRYEPS---QLGWRFS-NNTVIA-------------YVKD-LR--IALSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C~a~G~P~P---~i~W~~~-dg~~i~-------------~~~~-~~--~~~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      ++.|.|.++|.-..   .++|.|. +| .++             ..+. ..  ....+.  +|.+.+++.+      |++
T Consensus        15 sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~------DTa   87 (115)
T cd05721          15 AASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN------QTD   87 (115)
T ss_pred             CEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH------HCe
Confidence            39999999886655   4788763 33 211             0111 11  112222  6888877665      899


Q ss_pred             EEEEEEE
Q psy5697         118 VYRCRAS  124 (145)
Q Consensus       118 ~Y~C~A~  124 (145)
                      .|.|.-+
T Consensus        88 ~Y~Ca~e   94 (115)
T cd05721          88 IYFCKIE   94 (115)
T ss_pred             EEEEEee
Confidence            9999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=91.44  E-value=0.19  Score=34.17  Aligned_cols=63  Identities=11%  Similarity=0.062  Sum_probs=32.2

Q ss_pred             eEE-Eee-EeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLE-LTR-QTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L-~C~-a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ..+ .|. +.|.|.++|+|+. +.......  ......+|+..+.. +.... .++.|--.+.|.++...
T Consensus        19 ~~vA~C~sa~gkPaa~IsW~~-~~~G~~~~--~~~~~~ngT~TV~S~~~l~p-~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          19 TTLAACCAAEGRPAADVTWET-NVYGTSES--HSQEHPNGTTTVTSEYIWVP-SRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEEEEEccCCccCCEeEEeC-CCCCccce--eeecCCCCCEEEEEEEEEEe-CHHHCCcEEEEEEeCcc
Confidence            444 777 6999999999984 42111110  11223455333221 11000 01214446999998873

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=90.96  E-value=1.4  Score=30.18  Aligned_cols=33  Identities=12%  Similarity=-0.068  Sum_probs=20.3

Q ss_pred             CEEEEcCCCCCccCeEEEeeEe-ccCC--CEEEEEc
Q psy5697          47 PFRIKSAPGGNRTRGLELTRQT-RYEP--SQLGWRF   79 (145)
Q Consensus        47 P~~i~~p~~~~~~g~~L~C~a~-G~P~--P~i~W~~   79 (145)
                      |.+..+++-..+..+++.|.+. ++|.  .+|.|++
T Consensus         4 p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~Llk   39 (99)
T cd07689           4 PEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIELLK   39 (99)
T ss_pred             ccCcccCcccCCceEEEEEEecCcccCCceEEEEec
Confidence            3333333333344499999985 5565  5799975

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG3515|consensus

Probab=89.85  E-value=1.3  Score=40.17  Aligned_cols=79  Identities=9%  Similarity=-0.049  Sum_probs=45.4

Q ss_pred             CCCCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEE----eeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA----LSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~----~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ....|.+...-+...  +++.+|.|.|.|.+.++|. +++......+..+..    ..++  +..|.+....      +.
T Consensus       596 ~~~tp~~~~~~~g~v--~as~~~~a~~~~~~~~~~~-k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~------~~  666 (741)
T KOG3515|consen  596 TVRTPNMYTAQEGCV--NASDDCVASGVPSTSFTTA-KTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDG------SD  666 (741)
T ss_pred             cccCCceeeeccCcc--cccccceecccccceeecc-cCCCcccCCceEEEeeeeccccccccccccCCcch------hh
Confidence            344455444433211  5899999999999999996 565554333332211    1222  2333332211      12


Q ss_pred             eEEEEEEEcCCCce
Q psy5697         117 TVYRCRASNEAGVI  130 (145)
Q Consensus       117 G~Y~C~A~N~~G~~  130 (145)
                      +...|++.|.+|+.
T Consensus       667 y~~~c~t~n~lg~~  680 (741)
T KOG3515|consen  667 YENGCTTQNLLGSD  680 (741)
T ss_pred             hcceeeecccCCCc
Confidence            33899999999986

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=87.90  E-value=0.59  Score=33.54  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             CeEEEeeEec-----cCCCEEEEEccCCeEeecccCc-eEE------------eeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTR-----YEPSQLGWRFSNNTVIAYVKDL-RIA------------LSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G-----~P~P~i~W~~~dg~~i~~~~~~-~~~------------~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+.|.|.+..     .+.-.|.|.+ +|..+-...+. ...            +..|  +|.+....       .-.|.|
T Consensus        29 tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~-------a~~GnY  100 (130)
T PF08204_consen   29 TVVIPCFVNNLEANNISEMYVKWKF-KNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD-------AVEGNY  100 (130)
T ss_dssp             EEEE--BBSS---SSGGGEEEEEEE-TTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH-------HH-EEE
T ss_pred             CEEEEeEeccccccccceEEEEEEE-CCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh-------ccccce
Confidence            3899999875     2344699975 56655321111 111            1123  47764321       128999


Q ss_pred             EEEEEcCCCce
Q psy5697         120 RCRASNEAGVI  130 (145)
Q Consensus       120 ~C~A~N~~G~~  130 (145)
                      +|.+.+...+.
T Consensus       101 TCeVt~~~~eg  111 (130)
T PF08204_consen  101 TCEVTELSREG  111 (130)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEEEecCCCc
Confidence            99998876654

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03189 UL14 tegument protein; Provisional

Probab=80.66  E-value=3.8  Score=33.61  Aligned_cols=27  Identities=37%  Similarity=0.658  Sum_probs=20.1

Q ss_pred             CCeEEEEEEEcC-CCceEEEEEEEEecc
Q psy5697         115 HSTVYRCRASNE-AGVILSRFVHVKADS  141 (145)
Q Consensus       115 d~G~Y~C~A~N~-~G~~~s~~v~v~~~~  141 (145)
                      -+|+|.|+-.|. +|-+..+.+.|..++
T Consensus       144 taG~Y~CvLrN~tHglv~~rf~ivtdve  171 (348)
T PHA03189        144 TAGMYECVLRNETHGLVLQRFVIVTDVE  171 (348)
T ss_pred             ccceEEEEeccccceeeeEEeeeeeehh
Confidence            399999999999 666666666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-10
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-10
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-10
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		4e-10

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR VH
Sbjct: 73  WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132
Query: 137 VKA 139
           V+A
Sbjct: 133 VRA 135

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 74  QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
           ++ W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR
Sbjct: 35  EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 94
Query: 134 FVHVKA 139
            VHV+A
Sbjct: 95  DVHVRA 100

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 74  QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
           ++ W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR
Sbjct: 35  EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 94
Query: 134 FVHVKA 139
            VHV+A
Sbjct: 95  DVHVRA 100

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 74  QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR 133
           ++ W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR
Sbjct: 41  EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 100
Query: 134 FVHVKA 139
            VHV+A
Sbjct: 101 DVHVRA 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-06
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 66.9 bits (163), Expect = 4e-14
 Identities = 29/63 (46%), Positives = 39/63 (61%)

Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR VH
Sbjct: 38  WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 97

Query: 137 VKA 139
           V+A
Sbjct: 98  VRA 100

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 29/63 (46%), Positives = 39/63 (61%)

Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W  S+ T +  V  LR   S+G L+FPPF    +R +VH+ VY C A N+ G I+SR VH
Sbjct: 73  WIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132

Query: 137 VKA 139
           V+A
Sbjct: 133 VRA 135

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W+  N T +    D R ++ +GSL+     +        +  Y+C A+N  G I+SR   
Sbjct: 42  WKL-NGTDVDIGMDFRYSVVDGSLLINNPNK-----TQDAGTYQCIATNSFGTIVSREAK 95

Query: 137 VKA 139
           ++ 
Sbjct: 96  LQF 98

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 77  WRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH 136
           W+  N T +    D R  L  G L+              +  Y+C A+N  G ++SR   
Sbjct: 41  WKM-NGTELKMGPDSRYRLVAGDLVISNP-----VKAKDAGSYQCVATNARGTVVSREAS 94

Query: 137 VK 138
           ++
Sbjct: 95  LR 96

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 71  EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI 130
           +  +  W+    +      +  +    GSL+F     +          Y+C A   AGV 
Sbjct: 35  QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQCFAETPAGVA 88

Query: 131 LSRFVHVK 138
            SR +  +
Sbjct: 89  SSRVISFR 96

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 77  WRFSNNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF 134
           W   N+      KD R+++   +G+L+      +G RP+ +   Y+C A N+ G  LS  
Sbjct: 51  WTR-NSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNR 107

Query: 135 VHVK 138
           + ++
Sbjct: 108 IRLQ 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 92  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
           R+ L +GSL F               VY C A N  G  +S    ++
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLE 106

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 92  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
           R+ L +GSL F               VY C A N  G  +S    ++
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRP-DEGVYVCVARNYLGEAVSHDASLE 106

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 78  RFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV 137
            + NN  +     L+++  N +L               +  Y+C   N      S  V +
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN------DTASYKCETQNPVSARRSDSVIL 197

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 92  RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK 138
           R+   +G+L F    +     D     Y C A N  G  +SR   ++
Sbjct: 59  RVQFKDGALFFYRTMQGKKEQD--GGEYWCVAKNRVGQAVSRHASLQ 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.77
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.72
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.71
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.69
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.68
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.67
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.67
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.67
1he7_A	126	High affinity nerve growth factor receptor; transf	99.66
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.66
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.65
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.65
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.64
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.64
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.63
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.63
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.63
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.63
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.62
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.61
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.61
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.6
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.6
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.6
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.6
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.6
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.59
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.58
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.58
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.57
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.55
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.55
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.55
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.55
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.54
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.54
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.54
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.54
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.54
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.54
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.53
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.53
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.53
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.53
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.53
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.52
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.51
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.51
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.51
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.51
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.51
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.5
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.5
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.49
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.49
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.49
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.49
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.47
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.47
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.47
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.47
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.47
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.47
2ens_A	96	Advanced glycosylation END product-specific recept	99.47
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.47
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.46
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.46
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.45
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.45
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.45
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.45
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.45
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.44
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.44
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.44
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.43
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.43
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.43
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.43
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.42
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.42
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.42
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.42
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.42
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.42
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.42
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.41
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.41
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.41
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.41
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.41
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.41
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.4
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.4
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.4
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.4
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.4
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.4
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.4
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.4
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.4
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.39
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.38
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.38
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.38
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.38
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.37
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.37
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.37
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.37
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.37
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.36
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.36
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.35
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.35
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.35
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.35
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.35
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.34
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.34
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.34
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.33
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.33
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.33
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.33
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.33
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.33
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.33
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.33
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.33
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.33
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.32
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.32
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.32
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.32
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.32
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.31
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.31
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.31
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.31
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.31
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.3
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.3
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.3
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.29
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.29
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.29
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.29
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.28
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.28
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.28
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.27
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.25
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.25
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.25
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.24
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.24
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.23
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.23
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.22
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.22
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.21
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.21
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.21
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.21
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.21
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.2
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.2
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.19
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.19
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.19
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.18
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.18
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.18
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.18
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.17
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.17
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.16
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.16
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.16
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.16
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.16
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.16
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.16
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.15
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.15
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.14
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.13
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.13
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.13
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.13
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.13
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.12
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.12
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.12
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.11
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.11
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.1
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.09
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.09
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.09
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.09
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.09
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.09
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.08
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.08
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.08
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.08
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.08
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.08
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.07
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.06
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.06
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.06
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.06
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.05
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.05
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.04
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.04
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.03
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.03
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.03
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.03
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.02
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.02
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.02
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.02
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.01
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.01
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.01
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.01
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.01
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.01
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.0
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.0
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.99
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.99
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.99
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.98
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.98
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.98
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.98
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.97
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.97
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.97
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.97
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.97
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.96
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.96
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.96
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.94
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.94
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.94
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.94
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.93
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.93
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.93
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.93
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.92
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.91
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.91
3khq_A	133	B-cell antigen receptor complex-associated protei	98.9
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.9
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.9
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.89
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.89
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.89
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.89
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.89
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.88
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.88
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.88
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.87
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.87
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.87
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.87
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.87
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.86
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.86
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.86
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.85
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.85
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.85
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.85
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.84
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.84
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.83
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.83
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.83
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.83
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.82
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.82
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.82
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.82
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.82
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.82
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.81
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.81
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.81
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.81
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.81
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.8
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.8
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.79
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.79
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.79
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.78
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.78
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.77
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.77
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.77
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.77
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.77
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.77
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.76
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.76
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.76
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.76
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.76
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.75
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.75
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.75
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.75
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.74
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.74
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.74
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.73
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.73
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.73
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.72
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.72
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.72
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.72
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.72
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.71
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.71
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.71
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.71
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.71
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.7
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.7
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.7
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.69
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.68
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.68
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.67
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.67
1xt5_A	135	Variable region-containing chitin-binding protein	98.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.66
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.66
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.65
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.65
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.65
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.65
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.65
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.65
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.65
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.65
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.64
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.64
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.63
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.63
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.63
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.62
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.62
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.62
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.62
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.61
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.61
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.61
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.61
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.6
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.59
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.59
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.59
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.59
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.59
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.59
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.58
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.58
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.58
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.57
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.57
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.57
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.57
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.57
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.57
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.57
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.57
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.56
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	97.97
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.55
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.55
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.54
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.54
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.53
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.52
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.52
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.51
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.5
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.5
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.5
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.49
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.49
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.48
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.48
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.47
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.45
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.45
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.44
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.44
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.43
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.43
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.42
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.41
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.4
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.39
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.38
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.37
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.37
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.37
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.37
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.36
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.36
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.35
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.34
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.34
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.34
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.32
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.31
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.29
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.29
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.28
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.27
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.27
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.26
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.25
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.25

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.77  E-value=1.7e-18  Score=117.96  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      ..||.|++.|.+ ....  .+.|.|.+.|+|.|+|+|+ +||..+....+......++  +|.|.++..+      |+|.
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~   83 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWE-KGGQQLAASERLSFPADGAEHGLLLTAALPT------DAGV   83 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEE-ETTEECCCCSSEECCEETTEEEEEESSCCGG------GCEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEE-ECcccccceeeEEEeecCceEEEEEecCChh------hCEE
Confidence            457999999988 3333  3999999999999999998 5888887544332222333  7999888655      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEe
Q psy5697         119 YRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |+|.|+|.+|.+ .+..+.|..
T Consensus        84 Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           84 YVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEEc
Confidence            999999999998 344566553

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.72  E-value=9.1e-18  Score=112.78  Aligned_cols=88  Identities=11%  Similarity=0.047  Sum_probs=64.5

Q ss_pred             CCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCC---cEEEcCCCCCCCCCCCCCe
Q psy5697          45 HYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      .||.|...|.+ ....|  +.|.|.+.|+|.|+|+|+ +||..+...... ..+...+   +|.|.++..+      |+|
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~-k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G   76 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWS-CGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ------DGG   76 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEE-ETTEECCTTGGGTEEEEECSSEEEEEESSCCGG------GCE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEE-ECceEeeeeccceeeeecccceEEEEEcCCCcc------CCE
Confidence            46788777776 23333  899999999999999998 488888643322 2222222   7999887655      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEEEe
Q psy5697         118 VYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      .|+|.|+|.+|+. .+..+.|+.
T Consensus        77 ~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           77 LYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEEE
Confidence            9999999999997 444666653

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=105.61  Aligned_cols=89  Identities=13%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             CCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          43 NEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ...+|.|+..|.+ ....|  +.|.|.+.|+|.|.|+|++ ||..+...........+++|.|.++..+      |+|.|
T Consensus         5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y   77 (100)
T 2edj_A            5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQGTLQIKNLRIS------DTGTY   77 (100)
T ss_dssp             CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEE-SSSEESSSCSSCEECTTCCEEEESCCTT------TCCEE
T ss_pred             CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEE-CCEECCCCCCCEEEcCCCEEEEccCCcc------cCEEE
Confidence            4568899988877 33333  8999999999999999985 7777763333345567889999988765      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEE
Q psy5697         120 RCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|.|..|.. .+..+.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           78 TCVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             EEEEECSSCCCBCCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEEEEe
Confidence            99999999987 44455554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=104.22  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ....+|.|+..|.+ ...  ..+.|.|.+.|+|.|.|+|+ +||..+............+  +|.|.++..+      |+
T Consensus         4 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~-k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~   76 (103)
T 3qp3_A            4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWY-HNGVELQESSKIHYTNTSGVLTLEILDCHTD------DS   76 (103)
T ss_dssp             TTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEE-ETTEECCCCSSEEEEEETTEEEEEECSCCGG------GC
T ss_pred             CCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEE-ECCEECCCCCCEEEEECCCEEEEEEcCCCcc------cC
Confidence            34557888888876 222  33999999999999999998 4888876544333333333  6999887655      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.|+|.+|.. .+..+.|..
T Consensus        77 G~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           77 GTYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEC
Confidence            99999999999998 444666654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=4.3e-16  Score=105.49  Aligned_cols=92  Identities=15%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeE
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      ..+|.|+..|.+ ....  .+.|.|.+.|+|.|+|+|++ ||..+....+......  +++|.|.++..+      |+|.
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~   77 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGSKLTILAARQE------HCGC   77 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSEEEEECSSEEEEEETTCCTT------TCEE
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEE-CCEECcCCCCEEEEEcCCEEEEEECCCChh------cCEE
Confidence            457888887776 2233  39999999999999999985 7777754433322222  347999888765      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEeccC
Q psy5697         119 YRCRASNEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~~~~~  142 (145)
                      |+|.|+|..|.. .+..+.|...+.
T Consensus        78 Y~C~a~N~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           78 YTLLVENKLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             EEEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEEEECCCcEEEEEEEEEECCCC
Confidence            999999999987 444666664443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.67  E-value=8.4e-17  Score=105.35  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             CCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCC--eEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNN--TVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg--~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.|...+.+ ...  ..+.|.|.+.|+|.|.|+|++ +|  ..+............++|.|.++..+      |+|.|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~   74 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSSTTSIFFPSAKRA------DSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEEC-STTTCBCSTTSEEEEETTEEEEECTTBCGG------GCEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEE-CCCCcccCCcEEEEecCCEEEEEECCCChh------cCEEEE
Confidence            5777655554 222  338999999999999999985 66  66643211111122347999887655      899999


Q ss_pred             EEEEcCCCce
Q psy5697         121 CRASNEAGVI  130 (145)
Q Consensus       121 C~A~N~~G~~  130 (145)
                      |.|+|..|..
T Consensus        75 C~a~N~~G~~   84 (93)
T 1wit_A           75 LKVKNELGED   84 (93)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEcCCCeE
Confidence            9999999976

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=3.7e-16  Score=102.69  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEE-eeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA-LSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      ..+|.|+..|.+ ....  .+.|.|.+.|.|.|.|+|+ +||..+......... ..++  +|.|.++..+      |+|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~-k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G   75 (99)
T 1g1c_A            3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWY-KNGVKIERSDRIYWYWPEDNVCELVIRDVTGE------DSA   75 (99)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEE-ETTEECCCCSSEEEEEEETTEEEEEECSCCGG------GCE
T ss_pred             CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEE-ECCEECCCCCCEEEEEcCCCEEEEEECCCCcC------CCE
Confidence            356888888877 2233  3899999999999999997 588887654433222 2344  7999888655      899


Q ss_pred             EEEEEEEcCCCceE-EEEEEEE
Q psy5697         118 VYRCRASNEAGVIL-SRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~-s~~v~v~  138 (145)
                      .|+|.|+|.+|... +..+.|.
T Consensus        76 ~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           76 SIMVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEECCCcEEEEEEEEEe
Confidence            99999999999984 3355554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=103.05  Aligned_cols=88  Identities=17%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCe
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      ..+|.|+..|.+ ....  .+.|.|.+.|+|.|.|+|++ +|..+...........++   +|.|.++..+      |+|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G   75 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEGGLCRLRILAAERG------DAG   75 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTEECCCBTTEEEEECGGGEEEEEESSCCGG------GCE
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCCCEEEEECCCCEEEEEEccCCcC------CCE
Confidence            356888888776 2233  38999999999999999985 778776443333333344   6999887655      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEEE
Q psy5697         118 VYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .|+|.|+|..|.. .+..+.|.
T Consensus        76 ~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           76 FYTCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEECCCceeEEEEEEEE
Confidence            9999999999997 33344443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.67  E-value=2.9e-16  Score=107.54  Aligned_cols=96  Identities=21%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             CCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDV  114 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~  114 (145)
                      ....+|.|++.|.+ ....|  +.|.|.+.|.|.|.|+|++ +|..+........+..+  |  +|.|.++..+      
T Consensus        11 ~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------   83 (116)
T 2kkq_A           11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKK------   83 (116)
T ss_dssp             CCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEE-TTEECCCCBTTEEEEECTTCEEEEEEEEECGG------
T ss_pred             CCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEE-CCEECcCCCCeEEEEeCCCCeEEEEECCCCcc------
Confidence            34567889888887 33344  8999999999999999985 77777643223333333  3  7999988765      


Q ss_pred             CCeEEEEEEEcCCCce-EEEEEEEEeccCCC
Q psy5697         115 HSTVYRCRASNEAGVI-LSRFVHVKADSRIP  144 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~~p  144 (145)
                      |+|.|+|.|+|..|.. .+..+.|...+..+
T Consensus        84 D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           84 DAGWYTVSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             cCEEEEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence            8999999999999997 44466776554443

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.66  E-value=2.3e-16  Score=111.47  Aligned_cols=72  Identities=15%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe---------eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL---------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~---------~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ...|+|.+.|+|+|+|+|+ +||.++...+......         ..|+|.|.++...      |+|.|+|+|+|.+|.+
T Consensus        17 ~~~l~c~v~G~P~P~I~W~-knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~YtC~A~N~~G~~   89 (126)
T 1he7_A           17 HWCIPFSVDGQPAPSLRWL-FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQA   89 (126)
T ss_dssp             EEEEEEEECCSSCCEEEEE-ETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGG------GCEEEEEEEEETTEEE
T ss_pred             cEEEEEEEeeeCCCeEEEE-ECCEECCCCCceeEEEeeccccccccceEEEECcCCCC------CCEEEEEEEEECCCeE
Confidence            3889999999999999998 5899987654332221         1368999887655      8999999999999997


Q ss_pred             -EEEEEEEE
Q psy5697         131 -LSRFVHVK  138 (145)
Q Consensus       131 -~s~~v~v~  138 (145)
                       .+..+.|.
T Consensus        90 ~~t~~l~v~   98 (126)
T 1he7_A           90 SASIMAAFM   98 (126)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEEEE
Confidence             33345444

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.66  E-value=3.7e-16  Score=102.91  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCce-EEeeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLR-IALSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~-~~~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +|.|+..|.+ ..  +..+.|.|.+.|+|.|.|+|++ ||..+....... ....+|  +|.|.++..+      |+|.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y   77 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS------DAGAY   77 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEE-TTEEECCCSSSCEEEETTTEEEEEESSCCGG------GCEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEE-CCEECcCCCcEEEEEcCCCeEEEEECCCCcc------cCEEE
Confidence            5666666655 22  2338999999999999999984 888876543333 334455  8999887655      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEE
Q psy5697         120 RCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|+|..|.. .+..+.|.
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           78 ACVAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEEEEEE
Confidence            99999999996 33344444

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.65  E-value=9.2e-16  Score=100.63  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             CCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          44 EHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      ..+|.|+..|.+ ..  +..+.|.|.+.|.|.|.|+|++ ||..+...........++  +|.|.++..+      |+|.
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~   76 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDKGGFFLEIHKTDTS------DSGL   76 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEE-TTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEE-CCEECcCCCCEEEEEeCCEEEEEECCCCcc------cCEE
Confidence            346788888876 22  2339999999999999999985 888876544333333334  7999887655      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|.|+|..|.. .+..+.|+
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           77 YTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEeEEEEEEEE
Confidence            999999999997 44455554

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=2.7e-16  Score=107.09  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          43 NEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ...+|.|+..|.+ ....|  +.|.|.+.|+|.|.|+|++ ||..+...........+|+|.|.++..+      |+|.|
T Consensus         5 ~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k-~g~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y   77 (118)
T 2eo9_A            5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQLENGVLQIRYAKLG------DTGRY   77 (118)
T ss_dssp             CCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEE-SSSBCCTTSTTEEEEETTEEEEESCCGG------GCCCE
T ss_pred             CCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEE-CCEECcCCCCeEEEccCCEEEEccCCcC------CCEEE
Confidence            3457888777776 23333  8999999999999999985 7777754333445667889999988765      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEEe
Q psy5697         120 RCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +|.|+|..|.. .+..+.|..
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           78 TCIASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             EEEEECSSCEEEEECCEEEEC
T ss_pred             EEEEEcCCCcEEEEEEEEEEe
Confidence            99999999997 334566653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.64  E-value=2.9e-16  Score=117.69  Aligned_cols=108  Identities=8%  Similarity=0.006  Sum_probs=65.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+......        .........||.+...|.+ ....|  +.|.|.+.|+|+|+|+|++.||....
T Consensus        78 ~~D~G~Y~C~a~n~~g~~~--------~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~  149 (203)
T 4fa8_A           78 ISHDGNYLCRMKLGETEVT--------KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA  149 (203)
T ss_dssp             GGGCEEEEEEEEETTEEEE--------EEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------
T ss_pred             HHHCeEEEEEEEcCCCcEE--------EEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecC
Confidence            4566677776544322221        1111222346677666655 33333  89999999999999999876664432


Q ss_pred             c-c-cCceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          87 Y-V-KDLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        87 ~-~-~~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      . . .....+..+|+|.|.   ++..+      |+|.|+|+|+|.+|++.
T Consensus       150 ~~~~~~r~~~~~~g~l~il~i~~v~~~------D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          150 PTAANGGVMKEKDGSLSVAVDLSLPKP------WHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             ------CCEECTTSCEEEEEEEEECSS------CCCCEEEEEESSSCEEE
T ss_pred             cccccceEEEeCCCCEEEEEECCCCHH------HCEEEEEEEEcCCCEEE
Confidence            1 1 122356678887764   45443      89999999999999974

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.64  E-value=1.1e-15  Score=103.85  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeeccc----CceEEeeCCcEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.|...|.+ ....  .+.|.|.+.|+|.|.|+|++ +|..+....    .......+|++.+..+..... ...|+
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v-~~~D~   84 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPDE   84 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTCSSCSEEECTTSCEEESSCCCBTT-BCSSC
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEE-CCEeccccCCCCcceeEEecCCcEEEEEEEeCCC-CcCcC
Confidence            457888888877 2233  38999999999999999985 777765322    123556788888876532111 12389


Q ss_pred             eEEEEEEEcCCCceEEEEEEEE
Q psy5697         117 TVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      |.|+|.|+|.+|+..+..+.+.
T Consensus        85 G~Y~C~a~N~~G~~~s~~~~l~  106 (117)
T 2v9t_A           85 GVYVCVARNYLGEAVSHDASLE  106 (117)
T ss_dssp             EEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEEeCccceEeeeEEEE
Confidence            9999999999999977665555

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=7.3e-16  Score=103.59  Aligned_cols=95  Identities=18%  Similarity=0.065  Sum_probs=67.9

Q ss_pred             CCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCC--cEEEcCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNG--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~G--sL~i~~~~~~~~~~~~d  115 (145)
                      ...+|.|+..|.+ ....  .+.|.|.+.|+|.|.|+|++ ||..+........+.  .+|  +|.|.++..+      |
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D   77 (110)
T 2dm2_A            5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLDGTCSLHTTASTLD------D   77 (110)
T ss_dssp             CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEEC-SSCBCCTTCSSEEEEECTTCEEEEEESSCCTT------T
T ss_pred             CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEE-CCEECCCCCCeEEEEECCCcEEEEEECCCChh------h
Confidence            3456777777766 2223  38999999999999999985 777776432222222  245  6999887665      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEeccCCC
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKADSRIP  144 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~~~~~p  144 (145)
                      +|.|+|.|+|.+|.. .+..+.|...+.-|
T Consensus        78 ~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           78 DGNYTIMAANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             CSCCEEEEECTTCCEEECCCEEEECCSCCS
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEECCCCCC
Confidence            999999999999998 44467777655443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.63  E-value=9.3e-16  Score=103.04  Aligned_cols=71  Identities=17%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceE-E--e----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-A--L----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~--~----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      +.|.|.+.|+|.|+|+|+ +||..+........ .  .    .+++|.|.++..+      |+|.|+|.|+|.+|+. .+
T Consensus        19 ~~~~c~v~G~P~P~i~W~-k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~~G~~~~~   91 (103)
T 1wwb_X           19 WCIPFTVKGNPKPALQWF-YNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM------NNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             EEEEEEEECSSCCEEEEE-ETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEECSSCEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEE-ECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcc------cCEEEEEEEEeCCCcEeEE
Confidence            789999999999999997 58888875432211 1  1    1234999888665      8999999999999997 33


Q ss_pred             EEEEEE
Q psy5697         133 RFVHVK  138 (145)
Q Consensus       133 ~~v~v~  138 (145)
                      ..+.|.
T Consensus        92 ~~l~V~   97 (103)
T 1wwb_X           92 ISAHFM   97 (103)
T ss_dssp             EEECCS
T ss_pred             EEEEEC
Confidence            344443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=5.1e-16  Score=102.37  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=61.8

Q ss_pred             CCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          41 SENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .....+|.|...|.+ ....  .+.|.|.+.|+|.|.|+|++ ||..+.... ......+++|.|.++..+      |+|
T Consensus         6 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~~~-~~~~~~~~~L~i~~v~~~------D~G   77 (99)
T 2yr3_A            6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQYAR-STCEAGVAELHIQDALPE------DHG   77 (99)
T ss_dssp             SCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEE-SSSBCSSCC-CEEETTEEEEEECSCCTT------CCB
T ss_pred             CCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEE-CCEECcccc-eEeeCCeEEEEECCCChh------hCE
Confidence            345667888888877 2233  38999999999999999985 777765322 222233358999888765      899


Q ss_pred             EEEEEEEcCCCce
Q psy5697         118 VYRCRASNEAGVI  130 (145)
Q Consensus       118 ~Y~C~A~N~~G~~  130 (145)
                      .|+|.|+|..|..
T Consensus        78 ~Y~C~a~N~~g~~   90 (99)
T 2yr3_A           78 TYTCLAENALGQV   90 (99)
T ss_dssp             CEEEEEECSSCEE
T ss_pred             EEEEEEEECCCeE
Confidence            9999999999986

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.63  E-value=4.3e-16  Score=103.92  Aligned_cols=92  Identities=13%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             CCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|+..|.+ ..  +..+.|.|.+.|+|.|.|+|++ +|..+...........+++|.|.++..+      |+|.|+
T Consensus         8 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~   80 (108)
T 3kvq_A            8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRNLTIRRVRKE------DEGLYT   80 (108)
T ss_dssp             ---CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEE-SSSBCCCBTTEEEETTTTEEEECSCCGG------GCEEEE
T ss_pred             cCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEE-CCeEcccCCCeEEeCCCcEEEEeecCcc------cCEEEE
Confidence            446777666665 22  2339999999999999999985 6766654443334445678999988665      899999


Q ss_pred             EEEEcCCCce-EEEEEEEEeccC
Q psy5697         121 CRASNEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v~~~~~  142 (145)
                      |.|+|..|.. .+..+.|...+.
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           81 CQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             EEEC----CEEEEEEEEEEC---
T ss_pred             EEEEeCCCceEEEEEEEEeCCCc
Confidence            9999999998 455777765443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=9.4e-16  Score=125.84  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             cceeceeeeecCceeEeec--ccc------------CcccCCceeeeEEEec--cCCCCCCCEEEEcCCC-CCcc--CeE
Q psy5697           2 LNFHISTLLADADTYIIAD--RSL------------FPRPLGYLVGNIVYSS--RSENEHYPFRIKSAPG-GNRT--RGL   62 (145)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--~~~------------~p~~~~~~~~~~~~~~--~~~~~~~P~~i~~p~~-~~~~--g~~   62 (145)
                      |+++-|+|.|||++.|+..  ...            .|..+.+..   +...  ..-.+.+|.+...|.+ .+..  .++
T Consensus       284 L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~---l~~l~~~~~~C~~P~i~~~~~~~~v~~G~~v~  360 (440)
T 3zyj_A          284 IHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRY---IGELDQNYFTCYAPVIVEPPADLNVTEGMAAE  360 (440)
T ss_dssp             EECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCB---CC----CCSCCCCCCEEECCCCEEECTTSCCE
T ss_pred             EEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCcc---HhHhhhhhccCCCCcccccccceeeccCceEE
Confidence            4677899999999887642  111            344433222   2221  2235778988888776 2333  399


Q ss_pred             EEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          63 ELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        63 L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|.+ |.|+|.|+|++.+|..+....  .......+|+|.|.+++.+      |+|.|+|+|+|.+|+. .+..+.|..
T Consensus       361 L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~~~v~~  433 (440)
T 3zyj_A          361 LKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ------DTGMYTCMVSNSVGNTTASATLNVTG  433 (440)
T ss_dssp             ECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCST------TCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             EEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChh------hCEEEEEEEEcCCCcEEEEEEEEEec
Confidence            99999 679999999876776655322  2335667899999998765      8999999999999998 555777765


Q ss_pred             ccCC
Q psy5697         140 DSRI  143 (145)
Q Consensus       140 ~~~~  143 (145)
                      ..+-
T Consensus       434 ~~~~  437 (440)
T 3zyj_A          434 THHH  437 (440)
T ss_dssp             ----
T ss_pred             cccc
Confidence            4443

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.63  E-value=1.1e-15  Score=122.51  Aligned_cols=113  Identities=18%  Similarity=0.185  Sum_probs=80.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+......        .........+|.|+..+.+ ..  +..+.|.|.+.|+|.|+|+|+ +||.++.
T Consensus       267 ~~D~G~Y~C~a~N~~G~~~--------~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~-k~g~~l~  337 (384)
T 3kld_A          267 QEDAGSYECVAENSRGKNV--------AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL-KNGDPLL  337 (384)
T ss_dssp             GGGCEEEEEEEEETTEEEE--------EEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEE-ETTEECC
T ss_pred             hhhCEEEEEEEEcCCCeEE--------EEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEE-ECCEECC
Confidence            5677888887755443321        1112223346888887776 22  233899999999999999997 5888876


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      ...  +....+|+|.|..+..+      |+|.|+|.|+|.+|.+ .+..+.|.+
T Consensus       338 ~~~--~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          338 TRD--RIQIEQGTLNITIVNLS------DAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             CBT--TEEEETTEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CCc--cEEEeCCEEEEeecChh------hCEEEEEEEEeCCceEEeceEEEEec
Confidence            433  34457889999988655      8999999999999998 555676653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=8.6e-16  Score=102.90  Aligned_cols=95  Identities=19%  Similarity=0.291  Sum_probs=69.3

Q ss_pred             CCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ...+|.|+..|.+ ....  .+.|.|.+.|+|.|.|+|++ ||..+........ ...++  +|.|.++..+      |+
T Consensus         6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~   78 (110)
T 2dm3_A            6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKMLVRENGVHSLIIEPVTSR------DA   78 (110)
T ss_dssp             CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBB-SSSBCCCCSSEEEEECTTSCEEEEESSCCGG------GC
T ss_pred             CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEE-CCEECCCCCceEEEEecCCeEEEEEeeCCcc------cC
Confidence            3467899888876 2233  38999999999999999974 7777654333322 33344  7999888665      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEeccCCC
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKADSRIP  144 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~~~~~p  144 (145)
                      |.|+|.|.|..|.. .+..+.|...+.-|
T Consensus        79 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           79 GIYTCIATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             SBBCEEEECSSCEEEECCEEEEECCCCSS
T ss_pred             EEEEEEEECCCCEEEEEEEEEEeCCCCCC
Confidence            99999999999996 44467777655544

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=1.4e-15  Score=103.67  Aligned_cols=81  Identities=19%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CCCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe------eCCcEEEcCCCCCCCCCCCCCe
Q psy5697          44 EHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL------SNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        44 ~~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~------~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      ..+|.++..+......+..|.|.+.|+|.|.|+|+ +||..+..........      .+++|.|.++..+      |+|
T Consensus         6 ~~pP~i~~~~~~~~~~~~~l~C~~~g~P~p~i~W~-k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G   78 (118)
T 1wwc_A            6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWL-HNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY------NNG   78 (118)
T ss_dssp             CCCCCCCCCCCCCCCCEEEEEEEEECSSCCEEEEE-ETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGG------GCE
T ss_pred             ecCCceeccCCCeeccceEEEEEeeeeCCCeEEEE-ECCEECCCCCceeEEEeccCccccEEEEECCCChh------cCE
Confidence            45666555543333345789999999999999997 5888876543222221      3568999888655      899


Q ss_pred             EEEEEEEcCCCceE
Q psy5697         118 VYRCRASNEAGVIL  131 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~  131 (145)
                      .|+|.|+|.+|...
T Consensus        79 ~Y~C~a~N~~G~~~   92 (118)
T 1wwc_A           79 NYTLIAKNPLGTAN   92 (118)
T ss_dssp             EEEEEEEETTEEEE
T ss_pred             EEEEEEECCCCeEe
Confidence            99999999999973

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.60  E-value=2.4e-15  Score=101.32  Aligned_cols=86  Identities=9%  Similarity=-0.043  Sum_probs=57.7

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCC---CEEEEEccCCe-EeecccCce-EEe---------eCCcEEEcCCCCC
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEP---SQLGWRFSNNT-VIAYVKDLR-IAL---------SNGSLMFPPFPET  108 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~---P~i~W~~~dg~-~i~~~~~~~-~~~---------~~GsL~i~~~~~~  108 (145)
                      .|.|+..|.+ .+..  .++|.|.+.|.|.   |.|+|+| ++. .....+..+ ...         .+++|.|.++..+
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEE-TTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEcc-CCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            4677778876 2233  3999999999999   9999986 442 221111111 111         2458999988765


Q ss_pred             CCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                            |+|.|+|.|+|.+|.. .+..+.|.
T Consensus        83 ------D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           83 ------FTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             ------GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ------cCEEEEEEEecCCCceEEEEEEEEe
Confidence                  8999999999999987 33355543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.60  E-value=7.5e-15  Score=95.69  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             CCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      ++.|...|.+ ...  ..+.|.|.+.|+|.|.|+|++ +|..+...       .+++|.|.++..+      |+|.|+|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~   68 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE-------TKKLYMVPYVDLE------HQGTYWCH   68 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEE-TTEECTTC-------CSSEEEESSCCGG------GCEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEc-CCeeCCcC-------CCCeEEECCCCHH------hCEEEEEE
Confidence            4667777766 222  338999999999999999985 77776432       2468999887655      89999999


Q ss_pred             EEcCCCceEEEEEEEEec
Q psy5697         123 ASNEAGVILSRFVHVKAD  140 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~~~  140 (145)
                      |.|..|...+..+.|...
T Consensus        69 a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           69 VYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EECSSCEEECCCEEEEEC
T ss_pred             EEcCCCCEEeeeEEEEEe
Confidence            999999877666666543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.60  E-value=1.3e-15  Score=132.36  Aligned_cols=97  Identities=33%  Similarity=0.514  Sum_probs=79.1

Q ss_pred             CCCCCEEEEcCCCC--C--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeE
Q psy5697          43 NEHYPFRIKSAPGG--N--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        43 ~~~~P~~i~~p~~~--~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      ...+|.|+.+|.+.  .  +..+.|.|.|.|.|.|+|+|++.||..+...++.+....+|+|.|.++..++.++..|+|.
T Consensus        35 ~~~~P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~~~d~G~  114 (816)
T 3dmk_A           35 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV  114 (816)
T ss_dssp             -CEEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEE
T ss_pred             ccCCCcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCCceEEEeeCCcEEEcCCChHHccccccceE
Confidence            45679999999872  2  3349999999999999999986689888765555677889999998887665444446999


Q ss_pred             EEEEEEcCCCceEEEEEEEEe
Q psy5697         119 YRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       119 Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      |+|+|+|.+|++.|+.+.|+.
T Consensus       115 Y~C~a~n~~G~~~S~~~~v~~  135 (816)
T 3dmk_A          115 YACLARNQFGSIISRDVHVRA  135 (816)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEecCcceEEccceEEEE
Confidence            999999999999999888874

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.60  E-value=2.7e-15  Score=98.84  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             CCCCEEEEcCCC-----CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccC---ceEEeeCCcEEEcCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-----GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKD---LRIALSNGSLMFPPFPETGFRPD  113 (145)
Q Consensus        44 ~~~P~~i~~p~~-----~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~---~~~~~~~GsL~i~~~~~~~~~~~  113 (145)
                      ..+|.|+..|..     ....|  +.|.|.+.|.|.|.|+|+ +||..+.....   ......+++|.|.++..+     
T Consensus         2 ~~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-----   75 (100)
T 3caf_A            2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS-----   75 (100)
T ss_dssp             CEEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEE-ETTEECCGGGSTTCCEEEGGGTEEEECSCCGG-----
T ss_pred             CCCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEE-ECCEEcccccccccEEEecCeEEEEEccCCcC-----
Confidence            346777766532     12223  899999999999999998 47887764332   123334558999988655     


Q ss_pred             CCCeEEEEEEEcCCCce
Q psy5697         114 VHSTVYRCRASNEAGVI  130 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~  130 (145)
                       |+|.|+|.|.|..|..
T Consensus        76 -D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           76 -DKGNYTCVVENEYGSI   91 (100)
T ss_dssp             -GCEEEEEEEEETTEEE
T ss_pred             -CCEEEEEEEEeCCCEE
Confidence             8999999999999996

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.60  E-value=6.9e-15  Score=104.98  Aligned_cols=94  Identities=15%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe-eCC--cEEEcCCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL-SNG--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~-~~G--sL~i~~~~~~~~~~~~d  115 (145)
                      ....+|.|+..|.+ ....|  +.|.|.+.|+|.|.|+|++ ||..+.......... .+|  +|.|.++..+      |
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D  109 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDYDEEGNCSLTISEVCGD------D  109 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCSSSEEEEECTTCEEEEEESSCCGG------G
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEE-CCEECCCCCcEEEEECCCCeEEEEECCCChh------c
Confidence            34467899988887 22333  8999999999999999985 888876543332222 233  8999888765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEeccC
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~~~~  142 (145)
                      +|.|+|.|.|.+|.. .+..+.|...++
T Consensus       110 ~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  137 (154)
T 1fhg_A          110 DAKYTCKAVNSLGEATCTAELLVETMGK  137 (154)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC--
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEeCcCc
Confidence            999999999999997 445677765443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.59  E-value=1.7e-14  Score=106.20  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=80.6

Q ss_pred             ecCceeEeeccccCcc-cCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          11 ADADTYIIADRSLFPR-PLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      .|++.|.|...+.... ....+. -.|.........+|.+...|.. ..  +..+.|.|.+.|+|.|+|+|++ ||..+.
T Consensus        75 ~d~G~Y~C~~~n~~g~~~~~~~~-l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~-~~~~~~  152 (212)
T 2yd1_A           75 RDDAPYECVAENGVGDAVSADAT-LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVD  152 (212)
T ss_dssp             TTCSEEEEEEECSSSCEEEEEEE-EEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEE-TTEECC
T ss_pred             CcCceEEEEEEeCCCCeEEeeEE-EEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEE-CCeEcc
Confidence            6888888887654332 111111 0122222222334888888766 22  2339999999999999999984 788776


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE--EEEEEEe
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA  139 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s--~~v~v~~  139 (145)
                      ... .+....+|+|.|.++..+      |+|.|+|.|+|.+|+..+  ..+.|+.
T Consensus       153 ~~~-~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          153 MSN-PRYSLKDGFLQIENSREE------DQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             TTS-TTEEEETTEEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCC-CeEEccCCeEEEccCChh------hCEEEEEEeecCCCceeEEEEEEEEEe
Confidence            433 234566889999988655      899999999999999865  3566653

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=94.53  Aligned_cols=70  Identities=20%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE-EEEE
Q psy5697          61 GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-RFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s-~~v~  136 (145)
                      +.|.|.+.|. |.|.|+|++ ++..+...........++  +|.|.++..+      |+|.|+|.|+|..|...+ ..+.
T Consensus        19 v~l~C~~~g~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~   91 (97)
T 2bk8_A           19 VKYVCKIENYDQSTQVTWYF-GVRQLENSEKYEITYEDGVAILYVKDITKL------DDGTYRCKVVNDYGEDSSYAELF   91 (97)
T ss_dssp             EEEEEEEESCCTTCEEEEEE-TTEECCSSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEEEeccCCCCEEEEEE-CCEECcCCCCEEEEEcCCeEEEEEecCChh------hCeEEEEEEECCCCeEeEEEEEE
Confidence            8999999997 999999985 778776544333435667  8999888665      899999999999999743 3444


Q ss_pred             E
Q psy5697         137 V  137 (145)
Q Consensus       137 v  137 (145)
                      |
T Consensus        92 V   92 (97)
T 2bk8_A           92 V   92 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.58  E-value=3.8e-15  Score=98.02  Aligned_cols=77  Identities=10%  Similarity=0.003  Sum_probs=58.7

Q ss_pred             CCCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|...|.+ ...  ..+.|.|.+.|.| |.|+|++ ||..+....  +....+++|.|.++..+      |+|.|+
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k-~g~~~~~~~--~~~~~~~~L~i~~~~~~------D~G~Y~   76 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQLVESN--RTRITGEEVEVRDSIPA------DSGLYA   76 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEB-TTBCCCCCS--SEEECSSEEEESSCCGG------GSEEEE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEE-CCEecCCCC--CEEEeCCEEEECCCChH------HCEEEE
Confidence            455666666665 222  3389999999998 8999985 888775432  34445789999988765      899999


Q ss_pred             EEEEcCCCce
Q psy5697         121 CRASNEAGVI  130 (145)
Q Consensus       121 C~A~N~~G~~  130 (145)
                      |.|.|..|..
T Consensus        77 C~a~n~~g~~   86 (95)
T 2ckn_A           77 CVTSSPSGSD   86 (95)
T ss_dssp             EEEEETTEEE
T ss_pred             EEeccCCCcE
Confidence            9999999986

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.58  E-value=3e-15  Score=100.86  Aligned_cols=90  Identities=7%  Similarity=0.050  Sum_probs=65.4

Q ss_pred             CCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCC
Q psy5697          41 SENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d  115 (145)
                      .....+|.|+..|.+ ....  .+.|.|.+.|+|.|.|+|+ ++|..+...........  +++|.|.++..+      |
T Consensus         9 ~~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~------D   81 (106)
T 1nct_A            9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWL-RKGQVLSTSARHQVTTTKYKSTFEISSVQAS------D   81 (106)
T ss_dssp             CCSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBC-SSSSCCTTCSSEEEEECSSEEEEEECCCCSS------C
T ss_pred             CCCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEE-ECCEECCCCCCEEEEECCCEEEEEECcCCch------h
Confidence            345667899999887 2333  3899999999999999997 57777654333222222  358999888765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEE
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +|.|+|.|+|..|.. .+..+.|
T Consensus        82 ~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           82 EGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             CSEEEECCBCSSCBCCEEEEEEE
T ss_pred             CEEEEEEEEeCCCeEEEEEEEEE
Confidence            999999999999996 3334443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.57  E-value=2e-15  Score=119.73  Aligned_cols=94  Identities=33%  Similarity=0.508  Sum_probs=73.0

Q ss_pred             CCCEEEEcCCCC--C--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          45 HYPFRIKSAPGG--N--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        45 ~~P~~i~~p~~~--~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+|.|+.+|.+.  .  +..+.|.|.+.|+|.|+|+|++.||..+...++.+....+|+|.|.++..+|..++.|+|.|+
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence            468999999872  2  233999999999999999998768888775555556678899999988765333333599999


Q ss_pred             EEEEcCCCceEEEEEEEE
Q psy5697         121 CRASNEAGVILSRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~~s~~v~v~  138 (145)
                      |.|+|..|...+..+.|.
T Consensus        82 C~a~n~~g~~~s~~~~v~   99 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVR   99 (388)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEccCCeEEecceEEE
Confidence            999999998766655555

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=3e-14  Score=96.99  Aligned_cols=70  Identities=10%  Similarity=0.010  Sum_probs=53.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.|.|.+.|+|.|.|+|+ +||..+.. .+......++  +|.|.++..+      |+|.|+|.|+|..|.. .+..+.|
T Consensus        42 ~~l~C~~~g~P~p~i~W~-k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~~~l~V  113 (118)
T 2e7c_A           42 LNLVVPFQGKPRPQVVWT-KGGAPLDT-SRVHVRTSDFDTVFFVRQAARS------DSGEYELSVQIENMKDTATIRIRV  113 (118)
T ss_dssp             EEEEEEEEEESCCEEEEE-ETTEECCC-SSCEEEECSSEEEEEESSCCTT------TCEEEEEEEECSSCEECCEEEEEE
T ss_pred             EEEEEEEccCCCCEEEEE-ECCEECCC-CcEEEEECCCeEEEEECCCChh------cCEEEEEEEEeCCCeEEEEEEEEE
Confidence            899999999999999998 58888752 2233333343  4999888765      8999999999999976 3445555


Q ss_pred             E
Q psy5697         138 K  138 (145)
Q Consensus       138 ~  138 (145)
                      .
T Consensus       114 ~  114 (118)
T 2e7c_A          114 V  114 (118)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.55  E-value=3.3e-14  Score=103.68  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=61.2

Q ss_pred             CCEEEEcCCC--CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YPFRIKSAPG--GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P~~i~~p~~--~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~  118 (145)
                      +|.++..++.  ..  +..+.|.|.+.|+|.|.|+|+ +||..+...........++   +|.|.++..+      |+|.
T Consensus       116 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~  188 (212)
T 2r15_A          116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL-KNEKALAQTDHCNLKFEAGRTAYFTINGVSTA------DSGK  188 (212)
T ss_dssp             SCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEE-ETTEEECCCSSEEEEEETTTEEEEEESSCCGG------GCEE
T ss_pred             CCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEE-ECCeECccCCCEEEEEcCCCEEEEEEcCcchH------HCeE
Confidence            4545554443  22  233899999999999999997 5888887544433444434   8999887655      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|.|+|.+|.. .+..+.|.
T Consensus       189 Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          189 YGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEE
Confidence            999999999997 33355554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.55  E-value=4e-14  Score=104.34  Aligned_cols=120  Identities=14%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.......... -.|..........|.+...|.. ..  +..+.|.|.+.|+|.|+|+|+ +||..+.
T Consensus        73 ~~d~G~Y~C~a~n~~g~~~~~~~-l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~-~~g~~l~  150 (212)
T 2yd6_A           73 PRDEAIYECVASNNVGEISVSTR-LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF-KDFLPVD  150 (212)
T ss_dssp             TTTCEEEEEEEEETTEEEEEEEE-EEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEE-ETTEEC-
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEE-EEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEE-ECCcccc
Confidence            46778888877554333211111 0021112222345788887766 22  233999999999999999998 4788776


Q ss_pred             ccc--CceEEee---CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy5697          87 YVK--DLRIALS---NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        87 ~~~--~~~~~~~---~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      ...  .......   .++|.|.++..+      |+|.|+|.|+|.+|+..+..+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~s~~a~l  200 (212)
T 2yd6_A          151 TSNNNGRIKQLRSESIGALQIEQSEES------DQGKYECVATNSAGTRYSAPANL  200 (212)
T ss_dssp             -----CCEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEECCCEEE
T ss_pred             CcCCCceEEEEecCCeEEEEEcCCCcc------cCEEEEEEEECCCCccccccccE
Confidence            431  1122222   358999887655      89999999999999985553333

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.55  E-value=3.1e-14  Score=94.36  Aligned_cols=83  Identities=13%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCe
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      ..+|.|++.+.+ ....  .+.|.|.+.| |+|.|+|+ +||.++....+. .+..+|   +|.|.++..+      |+|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~-k~g~~i~~~~~~-~i~~~g~~~~L~I~~v~~~------D~G   73 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWK-LKGQPLAASPDC-EIIEDGKKHILILHNCQLG------MTG   73 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEE-ETTEECCCBTTE-EEEEETTEEEEEECSCCGG------GCE
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEE-ECCEECcCCCCE-EEEEECCEEEEEECCCChh------hCE
Confidence            567889998888 3333  3999999988 56899998 589988755443 333334   7999988765      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|+|.|.|..   .++.+.|.
T Consensus        74 ~Y~C~a~n~~---~sa~L~V~   91 (93)
T 1waa_A           74 EVSFQAANTK---SAANLKVK   91 (93)
T ss_dssp             EEEEEETTEE---EEEEEEEE
T ss_pred             EEEEEECCCc---EEEEEEEE
Confidence            9999999964   34455554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.55  E-value=1.2e-13  Score=99.72  Aligned_cols=114  Identities=14%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEcc-CCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFS-NNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~-dg~~i   85 (145)
                      ..|++.|.|...+. ..    ...    ........+|.+...+.. ..  +..+.|.|.+.|+|.|.|+|++. +|..+
T Consensus        65 ~~d~G~Y~C~~~n~-~~----~~~----~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~  135 (190)
T 2wv3_A           65 AEDSGEYHCVYHFV-SA----PKA----NATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFE  135 (190)
T ss_dssp             GGGCEEEEEEEEET-TE----EEE----EEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             cccCEEEEEEEEeC-Cc----ccc----cEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCcee
Confidence            56778888877543 11    111    111223346877777665 22  23389999999999999999864 77776


Q ss_pred             ec--ccCceEEeeCC---cEEEcCCC-CCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          86 AY--VKDLRIALSNG---SLMFPPFP-ETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        86 ~~--~~~~~~~~~~G---sL~i~~~~-~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ..  ......+..++   +|.|.++. .+      |+|.|+|.|+|.+|.. .+..+.|+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          136 EISNSSGRFFIINKENYTELNIVNLQITE------DPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECCCTTSCEEEEECSSEEEEEECSCCTTT------SCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eeecCCCeEEEecCCCeeEEEEEeccccC------CCEEEEEEEEecCCcceeEEEEEEE
Confidence            52  11222333332   79998876 45      8999999999999997 44455554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.54  E-value=3.2e-15  Score=123.00  Aligned_cols=128  Identities=21%  Similarity=0.248  Sum_probs=85.8

Q ss_pred             cceeceeeeecCceeEeeccc--------------cCcccCCceeeeEEEec--cCCCCCCCEEEEcCCC-CCccC--eE
Q psy5697           2 LNFHISTLLADADTYIIADRS--------------LFPRPLGYLVGNIVYSS--RSENEHYPFRIKSAPG-GNRTR--GL   62 (145)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~--------------~~p~~~~~~~~~~~~~~--~~~~~~~P~~i~~p~~-~~~~g--~~   62 (145)
                      |+++-|++.|||++.|+..-.              ..|..+.+   ..+...  ..-.+.+|.+...|.+ .+..|  ++
T Consensus       295 L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g---~~l~~~~~~~~~C~~P~i~~~~~~~~v~~G~~~~  371 (452)
T 3zyi_A          295 LHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRG---RYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAE  371 (452)
T ss_dssp             EECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTT---CBTTSCCGGGCCCCCCCCSBCCCCEECCTTSCCE
T ss_pred             EEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhcc---chhhccchhhhcccCcccccccccccccCCCEEE
Confidence            467789999999988753210              13443322   212111  1224678888877776 33333  99


Q ss_pred             EEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          63 ELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        63 L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|.+.  |.|+|+|++.+|..+....  .......+|+|.|.++..+      |+|.|+|+|+|.+|.. .+..+.|..
T Consensus       372 l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          372 LKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS------DTGVYTCMVTNVAGNSNASAYLNVST  443 (452)
T ss_dssp             ECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTT------CCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             EEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHH------HCEEEEEEEEcCCCcEEEEEEEEEEc
Confidence            999998  9999999976777665321  1235667899999988765      8999999999999997 444666653


Q ss_pred             c
Q psy5697         140 D  140 (145)
Q Consensus       140 ~  140 (145)
                      .
T Consensus       444 ~  444 (452)
T 3zyi_A          444 A  444 (452)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.54  E-value=7.2e-14  Score=100.69  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=76.9

Q ss_pred             eecCceeEeeccccCc-ccC-CceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFP-RPL-GYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p-~~~-~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~   84 (145)
                      ..|++.|.|......- ... .....-.+.........+|.+...++. ..  +..+.|.|.+.|+|.|.|+|++ +|..
T Consensus        75 ~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~-~~~~  153 (201)
T 3s97_C           75 ASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEP  153 (201)
T ss_dssp             GGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEE-TTBC
T ss_pred             cccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEe-CCCc
Confidence            5788888887755321 110 000101111122233456777766655 22  2338999999999999999985 6666


Q ss_pred             eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          85 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        85 i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +...  .+....+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|+
T Consensus       154 ~~~~--~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          154 MPST--AEISTSGAVLKIFNIQLE------DEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCTT--CEEETTTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCc--eeecCCCCEEEEccCChh------hCEEEEEEEEecCCceeeeEEEEEe
Confidence            5432  344556779999988655      8999999999999998 34455554

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.54  E-value=1.7e-14  Score=100.66  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             cCCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecc---------cCceEE------eeCCcEE
Q psy5697          40 RSENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYV---------KDLRIA------LSNGSLM  101 (145)
Q Consensus        40 ~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~---------~~~~~~------~~~GsL~  101 (145)
                      ......+|.|+..|.+ ....  .+.|.|.+.|.|.|.|+|++ +|..+...         ......      ..+++|.
T Consensus        15 ~~~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   93 (137)
T 3qr2_A           15 VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWF-EGQGPNDICSQLWDGARLDRVHIHATYHQHAASTIS   93 (137)
T ss_dssp             ------CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEE-EESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEE
T ss_pred             CCCCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEE-CCCCccccceeecccCcccceEEecccccccceEEE
Confidence            4455678999999987 2233  39999999999999999986 44432110         001111      1356899


Q ss_pred             EcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697         102 FPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       102 i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      |.++..+      |+|.|+|.|.|..|..
T Consensus        94 I~~v~~~------D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           94 IDTLVEE------DTGTYECRASNDPDRN  116 (137)
T ss_dssp             ECSCCGG------GCEEEEEEEECCTTSS
T ss_pred             ECCCCcc------cCEEEEEEEEecCCcc
Confidence            9988765      8999999999999985

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.54  E-value=6.1e-15  Score=118.25  Aligned_cols=86  Identities=20%  Similarity=0.292  Sum_probs=63.9

Q ss_pred             CCCEEEEcCCCC----CccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCC-CCCCCCCCCCCe
Q psy5697          45 HYPFRIKSAPGG----NRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPF-PETGFRPDVHST  117 (145)
Q Consensus        45 ~~P~~i~~p~~~----~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~-~~~~~~~~~d~G  117 (145)
                      .+|+|+++|.+.    ...|  +.|.|.+.|+|.|+|+|+ +||.++......+....+|+|.|.+. ..+      |+|
T Consensus         4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~-k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~------D~G   76 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWK-LNGTDVDIGMDFRYSVVDGSLLINNPNKTQ------DAG   76 (384)
T ss_dssp             EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEE-ETTEECCC----CEEEETTEEEEESCCHHH------HCE
T ss_pred             CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEE-ECCEECcCCCCccEEEECCEEEEcCCCCcc------cCE
Confidence            468999999872    1233  899999999999999997 58988864434455667899988764 322      899


Q ss_pred             EEEEEEEcCCCceEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      .|+|.|+|.+|...++.+.+
T Consensus        77 ~Y~C~A~N~~G~~~s~~~~l   96 (384)
T 3kld_A           77 TYQCIATNSFGTIVSREAKL   96 (384)
T ss_dssp             EEEEEEEETTEEEECCCEEE
T ss_pred             EEEEEEEcCcccEEecceEE
Confidence            99999999999876544333

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-14  Score=96.37  Aligned_cols=89  Identities=13%  Similarity=0.037  Sum_probs=64.7

Q ss_pred             CCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~  116 (145)
                      .+.+|.|++.+.+ ....  .+.|.|.+  .|.|.|+|+ +||..+....+. .+..+|   +|.|.++..+      |+
T Consensus         4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~-k~g~~l~~~~r~-~i~~~~~~~~L~I~~v~~~------D~   73 (100)
T 2yuz_A            4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWT-KNGLPVQESDRL-KVVQKGRIHKLVIANALTE------DE   73 (100)
T ss_dssp             SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEE-ETTEECCCCSSE-EEEECSSEEEEEESSCCGG------GC
T ss_pred             CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEE-ECCEECCCCCcE-EEEEeCCEEEEEECCCChh------hC
Confidence            4567788888877 2333  38999999  899999998 589888654433 333444   7999888765      89


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEeccC
Q psy5697         117 TVYRCRASNEAGVILSRFVHVKADSR  142 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~s~~v~v~~~~~  142 (145)
                      |.|+|.|+|. -...+..+.|...++
T Consensus        74 G~Y~C~a~N~-~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           74 GDYVFAPDAY-NVTLPAKVHVISGPS   98 (100)
T ss_dssp             SEEEEEESSS-CCCEEEEEEEECCSC
T ss_pred             EEEEEEEcCC-CeeEEEEEEEeCCCC
Confidence            9999999999 223566777775543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.53  E-value=6.4e-14  Score=100.79  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.....   ....    .......+|.+...|.. ....  .+.|.|.+.|+|.|.|+|++ +|..+.
T Consensus        71 ~~d~G~Y~C~~~~~~~~~---~~~~----~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~  142 (191)
T 1epf_A           71 IDDAGIYKCVVTAEDGTQ---SEAT----VNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVI  142 (191)
T ss_dssp             GGGCEEEEEEEEETTTEE---EEEE----EEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGG
T ss_pred             cccCEEEEEEEEcCCCcc---eEEE----EEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEE-CCEEee
Confidence            456777777764433110   0101    11222356788777765 2223  38999999999999999985 777775


Q ss_pred             cccC-ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc-eEEEEEEEE
Q psy5697          87 YVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-ILSRFVHVK  138 (145)
Q Consensus        87 ~~~~-~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~-~~s~~v~v~  138 (145)
                      .... ......+++|.|.++..+      |+|.|+|.|+|.+|. ..+..+.|.
T Consensus       143 ~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          143 LKKDVRFIVLSNNYLQIRGIKKT------DEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             GGCCTTEEECTTSCEEETTCCGG------GCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             ccCCceEEEecCCeEEECCCChh------hCEEEEEEEEEecceeEEEEEEEEe
Confidence            3322 335566789999988665      899999999999954 466666664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.53  E-value=2.4e-14  Score=102.90  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=76.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+........       ........+|.+...|.. ..  +..+.|.|.+.|+|.|.|+|++ +|..+.
T Consensus        71 ~~d~G~Y~C~~~~~~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~  142 (192)
T 2iep_A           71 DSDDGIYCCTANNGVGGAVES-------CGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALR  142 (192)
T ss_dssp             GGGCEEEEEEEECSSSCCEEE-------EEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE-TTEECC
T ss_pred             cccCeEEEEEEEcCCCceeEe-------EEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEe-CCEEcc
Confidence            567777877775433221100       001122345677666655 22  2338999999999999999985 778776


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      ... ......+++|.|.++..+      |+|.|+|.|+|.+|...+..+.|.
T Consensus       143 ~~~-~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~s~~~~l~  187 (192)
T 2iep_A          143 ENS-RIAVLESGSLRIHNVQKE------DAGQYRCVAKNSLGTAYSKLVKLE  187 (192)
T ss_dssp             CCS-SEEECTTSCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCC-cEEEecCCcEEEecCChh------hCEEEEEEEEcCCCcEEEEEEEEE
Confidence            443 335567789999888655      899999999999999865544444

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.53  E-value=6.5e-15  Score=110.08  Aligned_cols=83  Identities=11%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             CCCEEEEcCCCCCccC--eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          45 HYPFRIKSAPGGNRTR--GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g--~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+|.|++.+......|  +.|.|.+.|. |.|+|+|+ +||.++.....  ....+|  +|.|.++..+      |+|.|
T Consensus       116 ~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~-k~g~~l~~~~~--~~~~~~~~~L~I~~v~~~------D~G~Y  186 (207)
T 3rbs_A          116 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWY-KDEREISVDEK--HDFKDGICTLLITEFSKK------DAGIY  186 (207)
T ss_dssp             TSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEE-ETTEEECCCCC--CCCSSEEEEEEETTCCGG------GCEEE
T ss_pred             CCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEE-ECCEECCCCCc--eEcCCCEEEEEECCCCcc------cCEEE
Confidence            3788877663222233  8999999999 99999997 58888864322  222333  6999988765      89999


Q ss_pred             EEEEEcCCCceE-EEEEE
Q psy5697         120 RCRASNEAGVIL-SRFVH  136 (145)
Q Consensus       120 ~C~A~N~~G~~~-s~~v~  136 (145)
                      +|.|+|.+|... +..++
T Consensus       187 ~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          187 EVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             EEEEEETTEEEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEEEEe
Confidence            999999999984 33443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.53  E-value=1.1e-13  Score=100.89  Aligned_cols=116  Identities=15%  Similarity=0.238  Sum_probs=76.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeec
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAY   87 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~   87 (145)
                      ..|++.|.|.........   ........ .......|.+...+.. ...  .+.|.|.+.|.| |.|+|++ ||..+..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~---~~~~~~l~-V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~-~g~~l~~  152 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRR---TQATVRFH-VHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLF-NSQSLQL  152 (208)
T ss_dssp             GGGCEEEEEEEECSSCEE---EEEEEEEE-EECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEE-TTEECCC
T ss_pred             ccCCeEEEEEEEcccCce---eEEEEEEE-eccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEE-CCEeCCC
Confidence            578888888775542111   11110000 1122334666665554 333  389999999966 8999985 8888764


Q ss_pred             ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          88 VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        88 ~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .........+++|.|.++..+      |+|.|+|.|+|.+|+..|..++|.
T Consensus       153 ~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~s~~~~l~  197 (208)
T 3r4d_A          153 TERMTLSQNNSILRIDPIKRE------DAGEYQCEISNPVSVRRSNSIKLD  197 (208)
T ss_dssp             CSSEEEETTTTEEEESSCCGG------GCEEEEEEEECTTCCEECCCEEEC
T ss_pred             CCCeEEcCCCCEEEEeccCHH------hCeEEEEEEecCCCcccCCceeee
Confidence            443333334578999988655      899999999999999988877666

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.52  E-value=2e-14  Score=101.39  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             CEEEEcCCC-CCccC--eEEEeeEecc---CCCEEEEEccCCe-EeecccCceEE----e------eCCcEEEcCCCCCC
Q psy5697          47 PFRIKSAPG-GNRTR--GLELTRQTRY---EPSQLGWRFSNNT-VIAYVKDLRIA----L------SNGSLMFPPFPETG  109 (145)
Q Consensus        47 P~~i~~p~~-~~~~g--~~L~C~a~G~---P~P~i~W~~~dg~-~i~~~~~~~~~----~------~~GsL~i~~~~~~~  109 (145)
                      |.|++.|++ .+..|  ++|+|.+.|.   |.|+|+|+| ++. .+...++.+..    .      .+.+|.|.++..+ 
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-   85 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFK-GKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN-   85 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEE-SSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT-
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee-CcCcccCCCCCceEEEccccccccccceEEEEEccCCcc-
Confidence            678888877 23333  9999999885   899999986 421 11111111111    1      1468999998766 


Q ss_pred             CCCCCCCeEEEEEEEcCCCce-EEEEEEEEe-ccCCC
Q psy5697         110 FRPDVHSTVYRCRASNEAGVI-LSRFVHVKA-DSRIP  144 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~-~~~~p  144 (145)
                           |+|.|+|.|+|..|.. .+..++|.. ++..|
T Consensus        86 -----DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p  117 (126)
T 2dav_A           86 -----FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP  117 (126)
T ss_dssp             -----SCEEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             -----cCEEEEEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence                 8999999999999987 556888886 44444

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.52  E-value=1.1e-13  Score=99.59  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.........  ...   ......+|.+...+.. ....|  +.|.|.+.|+|.|.|+|++ ||..+.
T Consensus        72 ~~d~G~Y~C~~~n~~~~~~~~~--~l~---v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~  145 (194)
T 2a38_A           72 KANSGRYSLKATNGSGQATSTA--ELL---VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQ  145 (194)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEE--EEE---EECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEE-TTEECC
T ss_pred             cccCEEEEEEEEcCCceEeEEE--EEE---EccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEE-CCEECC
Confidence            5677788777644332221110  000   0112356777777765 22333  8999999999999999984 888876


Q ss_pred             cccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          87 YVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        87 ~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..........++  +|.|.++..+      |+|.|+|.|+|..|..
T Consensus       146 ~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~  185 (194)
T 2a38_A          146 SSLDFQISQEGDLYSLLIAEAYPE------DSGTYSVNATNSVGRA  185 (194)
T ss_dssp             CSSSEEEEEETTEEEEEEEEECGG------GCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEcCCEEEEEECCCChh------cCeEEEEEEEeCCCce
Confidence            544332322233  7999887655      8999999999999986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.52  E-value=6e-15  Score=121.54  Aligned_cols=126  Identities=14%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             cceeceeeeecCceeEeecccc------------CcccCCceeeeEEEecc------CCCCCCCEEEEcC-CC-CCcc--
Q psy5697           2 LNFHISTLLADADTYIIADRSL------------FPRPLGYLVGNIVYSSR------SENEHYPFRIKSA-PG-GNRT--   59 (145)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~------------~p~~~~~~~~~~~~~~~------~~~~~~P~~i~~p-~~-~~~~--   59 (145)
                      |+++-|.|.|||+..|......            .|..+   .|..+....      .-.+.+|.++... .+ .+..  
T Consensus       325 L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~---~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~~v~~G~  401 (477)
T 2id5_A          325 LILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFV---QGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGH  401 (477)
T ss_dssp             EECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGG---TTCBGGGSCSSCCTTSSCCEEEEESCCSCEEEEEETTC
T ss_pred             EEccCCCccCccchHhHHhhhhccccCccCceeCCchHH---cCCchhhCccccccceeEeccccccccccccEEEeCCC
Confidence            4567789999999988765321            23322   122121111      1234455554433 22 2223  


Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      .+.|.|.|.|+|.|.|+|++ +|..+..  ..+......+|+|.|.++..+      |+|.|+|+|+|.+|.. .+..+.
T Consensus       402 ~v~l~C~~~g~P~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~~~~~l~  474 (477)
T 2id5_A          402 TVQFVCRADGDPPPAILWLS-PRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ------DNGTYLCIAANAGGNDSMPAHLH  474 (477)
T ss_dssp             CEEECCCEEEESCCEEEEEC-TTSCBC-------CEECTTSCEEESSCCST------TCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEEEEeccccCCCEEEEEE-CCccccccCCCceEEeCCCCEEEEeeCChH------HCEEEEEEEEeCCCcEEEEEEEE
Confidence            38999999999999999985 6655432  122234566889999988765      8999999999999997 333444


Q ss_pred             E
Q psy5697         137 V  137 (145)
Q Consensus       137 v  137 (145)
                      |
T Consensus       475 V  475 (477)
T 2id5_A          475 V  475 (477)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.51  E-value=8.9e-14  Score=100.72  Aligned_cols=111  Identities=17%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC-EEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS-QLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+........       ........+|.+...|.+ ..  +..+.|.|.+.|+|.| +|+|++ ||..+
T Consensus        77 ~~d~G~Y~C~~~~~~~~~~~~-------~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~  148 (195)
T 2c5d_C           77 LSDTGQYQCLVFLGHQTFVSQ-------PGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPL  148 (195)
T ss_dssp             STTCEEEEEEEEETTEEEECC-------CEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEE-SSCBS
T ss_pred             ccCCcEEEEEEEeCCCceecc-------cEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEE-CCEec
Confidence            457777777765432111000       011223456888888776 22  2338999999999999 999985 77776


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      ......   ..+++|.|.++.        |+|.|+|.|+|.+|...|+.+.|..
T Consensus       149 ~~~~~~---~~~~~L~i~~~~--------d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          149 ATAPGH---GPQRSLHVPGLN--------KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SSSTTS---SCCEEEEECCCS--------SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCCCc---CCCCeEEEcccc--------cCceEEEEEEcCCCceEEEEEEEEE
Confidence            543221   456789997653        6899999999999998655555443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=106.12  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             CCCCEEEEcCCC--CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG--GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~--~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.++..++.  ...  ..+.|.|.+.|+|.|+|+|++ ||..+...........+|   +|.|.++..+      |+
T Consensus       219 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~  291 (317)
T 2y25_A          219 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFEAGRTAYFTINGVSTA------DS  291 (317)
T ss_dssp             TTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEE-SSSEECCCSSEEECCBTTTEEEEEEBSCCST------TC
T ss_pred             CCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEE-CCEeCCCCCcEEEEEcCCCEEEEEECCCCHH------HC
Confidence            345667766554  222  338999999999999999985 777776544333333335   8999988765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEec
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      |.|+|.|+|.+|.. .+..+.|..+
T Consensus       292 G~Y~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          292 GKYGLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            99999999999997 4445666543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.51  E-value=6.4e-14  Score=118.00  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=78.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.......        ........+|.|...|.. ..  +..+.|.|.+.|+|+|+|+|+ +||..+.
T Consensus       356 ~~D~G~Y~C~a~N~~g~~~~--------~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~-k~g~~l~  426 (570)
T 3b43_A          356 VEDSGDYTCEAHNAAGSASS--------STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH-KDKRELR  426 (570)
T ss_dssp             GGGCEEEEEEEEBTTBCCEE--------EEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEE-ETTEECC
T ss_pred             cccCEEEEEEEEeCCCEEEE--------EEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEE-ECCEECc
Confidence            45777888777554433211        112333467888877766 22  233899999999999999997 5888876


Q ss_pred             cccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy5697          87 YVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus        87 ~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      ..........+  ++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|..+
T Consensus       427 ~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~A~N~~G~~~~~~~l~v~~~  477 (570)
T 3b43_A          427 SGKKYKIMSENFLTSIHILNVDSA------DIGEYQCKASNDVGSDTCVGSITLKAP  477 (570)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEECCC
T ss_pred             CCCCEEEEEcCCEEEEEECCCChh------hCEEEEEEEEECCCeEEEEEEEEeccC
Confidence            54433333333  37999888655      8999999999999997 3445665543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.51  E-value=7.5e-14  Score=110.78  Aligned_cols=114  Identities=16%  Similarity=0.242  Sum_probs=79.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+........        .......+|.++..|.+ ..  +..+.|.|.+.|+|+|.|+|++ ||..+.
T Consensus       284 ~~d~G~Y~C~a~n~~g~~~~~--------~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~-~g~~~~  354 (404)
T 3p3y_A          284 EEDSGEYFCLASNKMGSIRHT--------ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQ  354 (404)
T ss_dssp             GGGCEEEEEEEECSSCEEEEE--------EEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE-TTEEGG
T ss_pred             HhHCEEEEEEEEeCCCcEEEE--------EEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEE-CCEecC
Confidence            567778888776543332111        11222346788887776 22  3349999999999999999984 888876


Q ss_pred             ccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ... .......+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       355 ~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          355 SAPPNPNREVAGDTIIFRDTQIS------SRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             GSCCCTTEEEETTEEEESSCCSS------CCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCCceEEecCCEEEEeecCHH------HCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            433 2234556789999988765      8999999999999998 44455554

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.51  E-value=6.9e-14  Score=110.78  Aligned_cols=112  Identities=21%  Similarity=0.258  Sum_probs=77.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+......        .........+|.++..+.+ ..  +..+.|.|.+.|+|.|.|+|+ +||..+.
T Consensus       266 ~~d~G~Y~C~a~n~~g~~~--------~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~-~~g~~~~  336 (382)
T 1cs6_A          266 FEDEGTYECEAENIKGRDT--------YQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL-RDGQPLA  336 (382)
T ss_dssp             GGGCEEEEEEEEETTEEEE--------EEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE-ETTEECC
T ss_pred             hhhCEEEEEEEEcCCCeEE--------EEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEE-ECCEECC
Confidence            4577778777755432221        1111222346777777766 22  233899999999999999997 4888876


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ...  +....+++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|.
T Consensus       337 ~~~--~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          337 SQN--RIEVSGGELRFSKLVLE------DSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             CCS--SEEEETTEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCc--eEEEECCEEEECcCCcc------cCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            432  34456889999988655      8999999999999998 44466654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.51  E-value=1e-13  Score=105.49  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-C--CccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-G--NRTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~--~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.......        ........+|.+...|.. .  .+..+.|.|.+.|+|+|+|+|++ ||..+.
T Consensus       164 ~~d~G~Y~C~a~n~~g~~~~--------~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~-~~~~~~  234 (284)
T 2rik_A          164 VEDSGDYTCEAHNAAGSASS--------STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELR  234 (284)
T ss_dssp             GGGCEEEEEEEECSSCEEEE--------EEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE-TTEEEC
T ss_pred             cccCEEEEEEEEcCCCceeE--------EEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE-CCEECc
Confidence            45677777776543322211        111222345665555554 1  22338999999999999999974 888876


Q ss_pred             cccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          87 YVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        87 ~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      ..........+  ++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|
T Consensus       235 ~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          235 SGKKYKIMSENFLTSIHILNVDSA------DIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             BTTTEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCEEEEEcCCEEEEEEcCCCcc------cCEEEEEEEEeCCCceeEEEEEEE
Confidence            54433333333  37889887654      8999999999999997 3334544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-14  Score=101.30  Aligned_cols=92  Identities=11%  Similarity=0.046  Sum_probs=62.3

Q ss_pred             CCCCCCCEEEEcCCC-CCccC--eEEEeeEecc---CCCEEEEEccCC-eEeecccCce-EE---e------eCCcEEEc
Q psy5697          41 SENEHYPFRIKSAPG-GNRTR--GLELTRQTRY---EPSQLGWRFSNN-TVIAYVKDLR-IA---L------SNGSLMFP  103 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~---P~P~i~W~~~dg-~~i~~~~~~~-~~---~------~~GsL~i~  103 (145)
                      ...+..+.|++.|++ .+..|  +.|.|.+.|.   |.|+|+|+| ++ ..+...++.+ .+   .      .+++|.|.
T Consensus         7 ~~~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~K-gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   85 (118)
T 2edn_A            7 GAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKESHNSASNVYTVELHIG   85 (118)
T ss_dssp             CCCCCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEE-TTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEES
T ss_pred             CccCCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEee-CCEeccCCCCccEEEeccccccccccceEEEEEe
Confidence            344556789999987 33333  9999999986   899999986 42 1221111111 11   1      24689999


Q ss_pred             CCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         104 PFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       104 ~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      ++..+      |+|.|+|.|+|..|.. .+..+.|..
T Consensus        86 ~v~~~------D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           86 KVVLG------DRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             SCCTT------TCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             eCChh------hCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            98766      8999999999999976 444555553

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=7.6e-14  Score=92.54  Aligned_cols=90  Identities=12%  Similarity=0.082  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d  115 (145)
                      ..+.+|.|+..|.+ ....  .+.|.|.+.| |.|.|+|++ ||..+...... .+..+|   +|.|.++..+      |
T Consensus         4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k-~g~~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D   74 (103)
T 2edf_A            4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLK-DRKAIRKSQKY-DVVCEGTMAMLVIRGASLK------D   74 (103)
T ss_dssp             SCCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEE-SSCBCCCSSSE-EEEEETTEEEEEESSCCTT------T
T ss_pred             CCCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEE-CCEEccCCCCE-EEEECCCEEEEEECCCCcc------c
Confidence            34567888888877 2333  3899999998 999999974 77777544333 333344   6999888765      8


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEeccCC
Q psy5697         116 STVYRCRASNEAGVILSRFVHVKADSRI  143 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~~v~v~~~~~~  143 (145)
                      +|.|+|.|.|   ...+..+.|...+.-
T Consensus        75 ~G~Y~C~a~n---~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           75 AGEYTCEVEA---SKSTASLHVEEKASG   99 (103)
T ss_dssp             CSEEEEECSS---CEEEEEEEECCCSSS
T ss_pred             CEEEEEEEcc---CCcEEEEEEeCCCCC
Confidence            9999999999   234445666544433

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=98.76  Aligned_cols=72  Identities=22%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .+.|.|.+.|+|.|.|+|+ +||..+...........+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|.
T Consensus       115 ~v~l~C~~~g~p~~~v~W~-~~g~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          115 EMTFSCRASGSPEPAISWF-RNGKLIEENEKYILKGSNTELTVRNIINS------DGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CEEEECEEEEESCCEEEEE-ETTEECCCSSSEEEETTTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEEEEccCCCCeEEEE-ECCEECcCCCcEEEecCCCEEEEcCCChh------hCeeEEEEEEeCCCceeEEEEEEEE
Confidence            3899999999999999998 48888765443333334568999887655      8999999999999987 34455443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.49  E-value=1.2e-13  Score=116.39  Aligned_cols=113  Identities=18%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.+....        .........+|.|+..+.+ ....|  +.|.|.+.|.|+|+|+|++ ||..+.
T Consensus       449 ~~D~G~Y~C~A~N~~G~~~--------~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k-~~~~~~  519 (570)
T 3b43_A          449 SADIGEYQCKASNDVGSDT--------CVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIV  519 (570)
T ss_dssp             GGGCEEEEEEEECSSCEEE--------EEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEE-TTEECC
T ss_pred             hhhCEEEEEEEEECCCeEE--------EEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEe-CCeEec
Confidence            5677788887766544332        1112334568999998887 23333  8999999999999999985 665443


Q ss_pred             cccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          87 YVKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        87 ~~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      .......+ ..+  ++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|
T Consensus       520 ~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~~a~L~V  568 (570)
T 3b43_A          520 RESDNIWISYSENIATLQFSRAEPA------NAGKYTCQIKNEAGTQECFATLSV  568 (570)
T ss_dssp             CCTTTEEECCCSSEEEEEESSCCTT------CCEEEEEEEECSSCEEEEEEEECC
T ss_pred             cCCCeEEEEECCCEEEEEECcCCHH------HCEEEEEEEEECCcEEEEEEEEEE
Confidence            22222222 222  38999887655      8999999999999998 4445544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.49  E-value=1.5e-13  Score=90.27  Aligned_cols=68  Identities=19%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          60 RGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        60 g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      .+.|.|.+. |.|.|.|+|++.++...   . ......+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|
T Consensus        27 ~v~l~C~~~~~~p~~~v~W~k~~~~~~---~-~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           27 DVTFICTAKSKSPAYTLVWTRLHNGKL---P-SRAMDFNGILTIRNVQPS------DAGTYVCTGSNMFAMDQGTATLHV   96 (98)
T ss_dssp             CEEEEEEEEESSSCCEEEEEEGGGBCC---C-TTEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CEEEEEeCCCCCCCcEEEEEeCCCCCC---C-ceeecCCCEEEEeCCChh------hCEEEEEEecCCCCccccEEEEEE
Confidence            389999998 79999999986432221   1 124456889999988765      8999999999999986 3334444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=95.73  Aligned_cols=61  Identities=13%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+.|+|.+.| |.|.|+|+ +||+++...........++  +|.|.++..+      |+|.|+|.|.|..+
T Consensus        23 ~v~l~C~v~~-p~~~v~W~-k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~   85 (91)
T 2lvc_A           23 CVMLACEVDR-EDAPVRWY-KDGQEVEESDFVVLENEGPHRRLVLPATQPS------DGGEFQCVAGDECA   85 (91)
T ss_dssp             CEEEEEECSC-TTSCCEEE-ETTSCCCCCSSCEEEEETTEEEEEESSCCGG------GCSEEEEECSSCEE
T ss_pred             cEEEEEEECC-CCcEEEEE-ECCEEeeeeeeeeEEecCCeEEEEeCCCChh------hcEEEEEEEcceEE
Confidence            3999999977 99999998 5888887655444444443  6999888665      89999999988643

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.48  E-value=4.9e-13  Score=103.69  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEcCCC-C-Cc--cCeEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-G-NR--TRGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~-~~--~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ....+|.+...+.. . ..  ..+.|.|.+.|+|.| .|+|++ ||.++...    ....+++|.|.++..+      |+
T Consensus       212 ~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~-~~~~l~~~----~~~~~~~L~i~~v~~~------d~  280 (313)
T 4fqp_A          212 TVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST-TMGPLPPF----AVAQGAQLLIRPVDKP------IN  280 (313)
T ss_dssp             CBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEE-TTBSCCTT----EEEETTEEEECCCSSC------CE
T ss_pred             ccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEE-CCEECCCc----eEEeCCEEEECcCChh------hC
Confidence            34557776544443 2 22  238999999999999 699985 67666421    3345779999988765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEE
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |.|+|.|+|.+|+. .+..+.|.
T Consensus       281 G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          281 TTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999987 34455555

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.47  E-value=2.4e-13  Score=107.78  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=77.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC--CCc--cCeEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG--GNR--TRGLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~--~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+........       ........+|.|...|.+  ...  ..+.|.|.+.|+|.|+|+|+ +||..+
T Consensus       279 ~~d~G~Y~C~a~n~~g~~~~~-------~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~-~~g~~~  350 (395)
T 1bih_A          279 PEDEGVYTCEVDNGVGKPQKH-------SLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS-HNAKPL  350 (395)
T ss_dssp             GGGCEEEEEEECCSSSSCEEE-------EEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEE-ETTEEC
T ss_pred             hhhCEEEEEEEEeCCCCceEE-------EEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEE-ECCEEC
Confidence            567888888876654332210       111222356788887765  222  33999999999999999997 488887


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEE
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHV  137 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v  137 (145)
                      ...   +....+++|.|.++..+      |+|.|+|.|+|.+|... +..+.|
T Consensus       351 ~~~---~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          351 SGG---RATVTDSGLVIKGVKNG------DKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CSS---SEEEETTEEEESSCCST------TCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCC---ceEEECCEEEEeeCCcc------cCEEEEEEEEccCCCceEEEEEEE
Confidence            532   34456779999988765      89999999999999973 334443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=91.58  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             CCCCEEEEcCCC----CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG----GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        44 ~~~P~~i~~p~~----~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d  115 (145)
                      ..+|.++..|..    ....|  +.|.|.+.|.|.| |+|+ +||..+...........++  +|.|.++..+      |
T Consensus         5 ~~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~-k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D   76 (104)
T 2e6p_A            5 SSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWY-KDGQKVEESELLVVKMDGRKHRLILPEAKVQ------D   76 (104)
T ss_dssp             CSSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEE-ETTEECCCBTTBEEEEETTEEEEEESSCCTT------T
T ss_pred             CCCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEe-eCCEECCCCCCEEEEeCCCEEEEEECCCChh------h
Confidence            446666666665    22233  8999999999999 9998 5888876544333332332  6999888665      8


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEEecc
Q psy5697         116 STVYRCRASNEAGVILSRFVHVKADS  141 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~~v~v~~~~  141 (145)
                      +|.|+|.|.|..|.   ..+.|...+
T Consensus        77 ~G~Y~C~a~n~~~~---~~l~V~~~P   99 (104)
T 2e6p_A           77 SGEFECRTEGVSAF---FGVTVQDPS   99 (104)
T ss_dssp             CEEEEEECSSCCCC---EEEEEECCC
T ss_pred             CEEEEEEECCceEE---EEEEEcCCC
Confidence            99999999998663   456665443

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.47  E-value=1e-13  Score=110.11  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+......        .........+|.++..|.+ ..  +..+.|.|.+.|+|.|+|+|+ +||..+.
T Consensus       284 ~~d~G~Y~C~a~n~~g~~~--------~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~-~~g~~~~  354 (403)
T 3laf_A          284 DDDSGTYTCVVTYKNENIS--------ASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM-KNGDVVI  354 (403)
T ss_dssp             GGGCEEEEEEEEETTEEEE--------EEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEE-ETTEECC
T ss_pred             HHHCEEEEEEEEcCCCceE--------EEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEE-ECCEECC
Confidence            4567777777644322211        1111222346788888776 22  233899999999999999997 4888775


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ... ......+++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|.
T Consensus       355 ~~~-~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          355 PSD-YFQIVGGSNLRILGVVKS------DEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             CSS-SEEEETTTEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCC-cEEEecCccEEEeccccc------cCEEEEEEEEcCCceEEEEEEEEEe
Confidence            433 334456778999887655      8999999999999998 33345443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.47  E-value=3e-13  Score=100.57  Aligned_cols=121  Identities=14%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcC-CC-CCc--cCeEEEeeEeccCCCEEEEEcc---CC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSA-PG-GNR--TRGLELTRQTRYEPSQLGWRFS---NN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p-~~-~~~--~g~~L~C~a~G~P~P~i~W~~~---dg   82 (145)
                      ..|++.|.|...+..........    .........+|.+...+ .. ...  ..+.|.|.+.|+|.|+|+|++.   ||
T Consensus        81 ~~d~G~Y~C~~~~~~~~~~~~~~----l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g  156 (241)
T 3grw_A           81 PSDRGNYTCVVENKFGSIRQTYT----LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG  156 (241)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEE----EEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSS
T ss_pred             cccCEEEEEEEeecCCceEEEEE----EEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCC
Confidence            56788888877553322211111    11111223345555543 33 222  3389999999999999999863   66


Q ss_pred             eEeecccCceEE----------eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy5697          83 TVIAYVKDLRIA----------LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus        83 ~~i~~~~~~~~~----------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      ..+.........          ..+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSER------DGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             CSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             cccCCCCceeeeeeeEeeeeecCCceEEEECcCCcc------cCcEEEEEEecCcceEEEEEEEEecCC
Confidence            665432211110          13457999887655      8999999999999998 4445555533

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.47  E-value=7.8e-13  Score=98.07  Aligned_cols=116  Identities=14%  Similarity=0.054  Sum_probs=77.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccC--------CCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRS--------ENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWR   78 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~   78 (145)
                      ..|++.|.|...+...........-.|.....        ....+|.+...|.. ..  +..+.|.|.+.|+|.|+|+|+
T Consensus        74 ~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~  153 (218)
T 3k0w_A           74 VKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWF  153 (218)
T ss_dssp             GGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEE
T ss_pred             hhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEE
Confidence            67888999988654322111101011222110        12345788888776 22  333999999999999999998


Q ss_pred             ccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          79 FSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        79 ~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      + ||..+...       .+++|.|.++..+      |+|.|+|.|.|..|...+..+.|..
T Consensus       154 ~-~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s~~~~l~V  200 (218)
T 3k0w_A          154 K-NELPLTHE-------TKKLYMVPYVDLE------HQGTYWCHVYNDRDSQDSKKVEIII  200 (218)
T ss_dssp             E-TTEECTTC-------CSSEEEESSCCGG------GCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             E-CCEECCCC-------CCCEEEEeecChh------cCEEEEEEEEcCCCCceeeeEEEEE
Confidence            5 77776432       2458999887655      8999999999999997777666653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.47  E-value=3.4e-13  Score=96.46  Aligned_cols=107  Identities=20%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             eecCceeEeeccccCcccC-CceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPL-GYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+...... ..+.        .....+|.+...|.. ..  +..+.|.|.+.|+|.| .|+|++ +|..
T Consensus        69 ~~d~G~Y~C~~~~~~~~~~~~~~~--------l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~  139 (182)
T 1rhf_A           69 RSDAGRYWCQVEDGGETEISQPVW--------LTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTK  139 (182)
T ss_dssp             GGGCEEEEEEESSCTTCEECCCEE--------EEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEE
T ss_pred             cccCeEEEEEEEcCCCcEEEEEEE--------EEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEc-CCeE
Confidence            5677788887765422111 0111        122346888887776 22  3338999999999999 999985 7777


Q ss_pred             eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          85 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        85 i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +....   .  .+++|.|.++  +      |+|.|+|.|+|.+|...++.+.|.
T Consensus       140 ~~~~~---~--~~~~L~i~~~--~------d~G~Y~C~a~N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          140 IGGPA---P--SPSVLNVTGV--T------QSTMFSCEAHNLKGLASSRTATVH  180 (182)
T ss_dssp             CSCSE---E--SSEEEEECCC--S------SCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCCC---C--CceEEEEecc--c------cCeEEEEEEECCCCCcccceEEEE
Confidence            64321   1  5668898765  2      799999999999999865555443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.2e-14  Score=92.97  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             CCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|...|.+ ....|  +.|.|.+.|+|.|.|+|++ ||..+...       .+++|.|.++..+      |+|.|+
T Consensus         8 ~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~   73 (96)
T 2ens_A            8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLP-------PSPVLILPEIGPQ------DQGTYS   73 (96)
T ss_dssp             CCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEE-SSSBCSSC-------CCSEEEEESCCTT------TCEEEE
T ss_pred             CCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEE-CCEECcCC-------CCCEEEECCCCcc------cCEEEE
Confidence            445777777766 23333  8999999999999999985 77665432       3568999888765      899999


Q ss_pred             EEEEcCCCc-eEEEEEEEEec
Q psy5697         121 CRASNEAGV-ILSRFVHVKAD  140 (145)
Q Consensus       121 C~A~N~~G~-~~s~~v~v~~~  140 (145)
                      |.|.|..|. ..+..+.|...
T Consensus        74 C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           74 CVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             CEECCSSCCCEECCCEEEEEC
T ss_pred             EEEEeCCCCcEEEEEEEEEEe
Confidence            999997654 46666666644

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.47  E-value=5.6e-13  Score=99.40  Aligned_cols=119  Identities=11%  Similarity=-0.023  Sum_probs=68.9

Q ss_pred             eceee-eecCceeEeeccccCcccCCce-eeeEEEeccCCCCCCCEEEEcCC-C-CC--ccCeEEEeeEeccCCCEEEEE
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYL-VGNIVYSSRSENEHYPFRIKSAP-G-GN--RTRGLELTRQTRYEPSQLGWR   78 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~P~~i~~p~-~-~~--~~g~~L~C~a~G~P~P~i~W~   78 (145)
                      +|..+ ..|++.|.|...+......-.. ... +.-.......+|.+...++ . ..  +..+.|.|.+.|.|.|.|+|+
T Consensus        93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~  171 (250)
T 2fbo_J           93 RLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS-VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWY  171 (250)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCCSGGGEEEEE-EEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEE
T ss_pred             EEeeCChhhCeEEEEEeccCccCCccccccee-EEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEE
Confidence            34443 6788999998865432211000 000 1000111122333333333 2 22  233999999999999999998


Q ss_pred             ccCCeEeeccc-----------------------CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          79 FSNNTVIAYVK-----------------------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        79 ~~dg~~i~~~~-----------------------~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      + +|..+....                       .......+++|.|.++..+      |+|.|+|.|+|.+|...
T Consensus       172 k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~g  240 (250)
T 2fbo_J          172 T-GPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT------DAGRVWCELATGQGELD  240 (250)
T ss_dssp             E-EEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG------GCEEEEEEEESSSSGGG
T ss_pred             e-CCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc------cCEEEEEEecCCccccC
Confidence            5 665543211                       1111224479999988765      89999999999888763

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.46  E-value=3.5e-13  Score=89.00  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=61.4

Q ss_pred             CCCCEEEEcCCC-CC--ccCeEEEeeEeccC--CCEEEEEccCCeEeecccCc--eEE-e-------eCCcEEEcCCCCC
Q psy5697          44 EHYPFRIKSAPG-GN--RTRGLELTRQTRYE--PSQLGWRFSNNTVIAYVKDL--RIA-L-------SNGSLMFPPFPET  108 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P--~P~i~W~~~dg~~i~~~~~~--~~~-~-------~~GsL~i~~~~~~  108 (145)
                      ..+|.|+..|.+ ..  +..+.|.|.+.|.|  .|.|+|++ +|..+......  ... .       .+++|.|.++..+
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXX-DNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEE-TTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEcc-CCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            457888888887 22  33399999999654  68999974 77766432100  011 1       1468999988665


Q ss_pred             CCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                            |+|.|+|.|+|..|...+..+.|.
T Consensus        87 ------D~G~Y~C~a~n~~g~~~s~~~~l~  110 (112)
T 3so5_A           87 ------SEGXYQCVISNHFGSSYSVXAXLT  110 (112)
T ss_dssp             ------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ------cCCeEEEEEEeCCCcEEEeEEEEE
Confidence                  899999999999999665555543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=1.5e-13  Score=91.84  Aligned_cols=87  Identities=10%  Similarity=0.009  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d  115 (145)
                      ....+|.|++.|.+ ....|  +.|.|.+.|.|.| |+|++ ||..+....+. .+..+|   +|.|.++..+      |
T Consensus         4 ~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k-~g~~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D   74 (106)
T 2dlt_A            4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYK-NGVEVRPSKRI-TISHVGRFHKLVIDDVRPE------D   74 (106)
T ss_dssp             SSCCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEE-SSCBCCCCSSC-EEEEETTEEEEEESSCCTT------T
T ss_pred             CCCCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEc-CCEECcCCCCE-EEEEeCCEEEEEECCCCcC------C
Confidence            34567899998887 33333  9999999999988 99984 77777644433 333344   7999888765      8


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEE
Q psy5697         116 STVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|+|.|.|..++ .+..+.|.
T Consensus        75 ~G~Y~C~a~n~~~~-~~~~l~V~   96 (106)
T 2dlt_A           75 EGDYTFVPDGYALS-LSAKLNFL   96 (106)
T ss_dssp             CSCEEEEEETSCCC-CCBCEEEE
T ss_pred             CEEEEEEEccCCce-EEEEEEEE
Confidence            99999999999332 34455555

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.45  E-value=1.6e-13  Score=99.18  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      +.|.|.+.|+|.|+|+|++ +|..+..........  .+++|.|.+ +..+      |+|.|+|.|+|.+|.. +..+.|
T Consensus       122 ~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~N~~g~~-~~~~~l  193 (197)
T 2j8h_A          122 VSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERK------DAGFYVVCAKNRFGID-QKTVEL  193 (197)
T ss_dssp             CEEEEEEEEESCCEEEEEE-SSCEECSSSSCEEEECSSEEEEECTTCCCGG------GCEEEEEEEEETTEEE-EEEEEE
T ss_pred             EEEEEEEEecCCCcEEEEE-CCEEeecCCCEEEEEcCCceEEEEeCCCCcc------cCEeEEEEEEeCCCcE-eEEEEE
Confidence            8999999999999999985 777776443332222  234888887 7654      8999999999999996 344444


Q ss_pred             E
Q psy5697         138 K  138 (145)
Q Consensus       138 ~  138 (145)
                      .
T Consensus       194 ~  194 (197)
T 2j8h_A          194 D  194 (197)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.45  E-value=4.6e-13  Score=103.42  Aligned_cols=114  Identities=12%  Similarity=0.089  Sum_probs=72.1

Q ss_pred             eecCceeEeecc-ccCcccCC-ceeeeEEEeccCCCCCCCEEEEcCCC--CCccC--eEEEeeEeccCCCEEEEEccCCe
Q psy5697          10 LADADTYIIADR-SLFPRPLG-YLVGNIVYSSRSENEHYPFRIKSAPG--GNRTR--GLELTRQTRYEPSQLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~-~~~p~~~~-~~~~~~~~~~~~~~~~~P~~i~~p~~--~~~~g--~~L~C~a~G~P~P~i~W~~~dg~   83 (145)
                      ..|++.|.|... +....... ...-. +.........+|.++..+.+  ....|  +.|.|.+.|+|.|.|+|++ ||.
T Consensus       171 ~~d~G~Y~C~a~~n~~g~~~~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~  248 (315)
T 1itb_B          171 EKHRGNYTCHASYTYLGKQYPITRVIE-FITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGS  248 (315)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEE-EEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEE-TTE
T ss_pred             ehhCcEEEEEEEcCCCCcEEEEEEEEE-EEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEE-CCE
Confidence            467778888775 33332210 00000 11111223567888766653  22333  8999999999999999985 888


Q ss_pred             EeecccC----ceEEee----------CCcEEEcCCCCCCCCCCCC-CeEEEEEEEcCCCceE
Q psy5697          84 VIAYVKD----LRIALS----------NGSLMFPPFPETGFRPDVH-STVYRCRASNEAGVIL  131 (145)
Q Consensus        84 ~i~~~~~----~~~~~~----------~GsL~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G~~~  131 (145)
                      .+.....    .+....          .++|.|.++..+      | +|.|+|.|+|.+|...
T Consensus       249 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~~G~Y~C~a~N~~G~~~  305 (315)
T 1itb_B          249 VIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR------FYKHPFTCFAKNTHGIDA  305 (315)
T ss_dssp             ECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG------GGTSCEEEEEECTTCCEE
T ss_pred             ECCcccccccccceeeeccCCCceeEEEEEEEEeecCHH------HcCCceEEEEecCCCcee
Confidence            8764331    111122          238999887655      8 9999999999999983

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.6e-13  Score=89.12  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAD  140 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~~  140 (145)
                      +.|.|.+.|.| |.|+|++ +|..+....  +....+++|.|.++..+      |+|.|+|.|.|..|.. +..+.|...
T Consensus        21 v~L~C~~~g~p-p~i~W~k-~g~~~~~~~--~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~~-~~~~~l~V~   89 (99)
T 2cr3_A           21 LQLRCRLRDDV-QSINWLR-DGVQLAESN--RTRITGEEVEVQDSVPA------DSGLYACVTSSPSGSD-TTYFSVNVS   89 (99)
T ss_dssp             EEEECCCCSSC-CEEEEEE-SSSBCCCCS--SEEECSSEEEETTCCTT------TCEEEEEEEEETTEEE-EEEEEECBC
T ss_pred             EEEEEEecCCC-CeEEEEE-CCEECCCCC--cEEEECCEEEEccCCHH------HCEEEEEEEEeCCceE-EEEEEEEEe
Confidence            89999999987 8999985 777765433  23334779999988765      8999999999999986 445555543


Q ss_pred             cC
Q psy5697         141 SR  142 (145)
Q Consensus       141 ~~  142 (145)
                      +.
T Consensus        90 ~~   91 (99)
T 2cr3_A           90 DA   91 (99)
T ss_dssp             SC
T ss_pred             cC
Confidence            33

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=99.85  Aligned_cols=121  Identities=11%  Similarity=0.016  Sum_probs=73.3

Q ss_pred             eecCceeEeeccccCcccCC-ceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLG-YLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+-...... .+.   +...  . ..+|.+...|.. ..  +..+.|.|.+.|+|.|.|+|++ ++...
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~---l~v~--~-~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~-~~~~~  222 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYY---VYRL--Q-VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTY-PRKES  222 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEE---EEEC--C-CCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEEC-TTSSS
T ss_pred             eccCcEEEEEEEeCCceeeeeeEE---EEec--C-CCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEc-CCccC
Confidence            45778888877532211111 111   1111  1 145555555544 22  2339999999999999999984 44322


Q ss_pred             eccc-CceEEe------eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEeccCC
Q psy5697          86 AYVK-DLRIAL------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKADSRI  143 (145)
Q Consensus        86 ~~~~-~~~~~~------~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~~  143 (145)
                      .... ......      ..++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|...+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          223 GRLVEPVTDFLLDMPYHIRSILHIPSAELE------DSGTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             SCCCCCEEEESCTTTTEEEEEEEESSCCSS------CCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             CCcccccccccCCcceEEEEEEEEcccChh------hCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence            1111 111111      2358999988765      8999999999999998 6678888865543

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.45  E-value=1.7e-14  Score=98.81  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             CCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCE-EEEEccCCeEeecc--cCceE--EeeCC----cEEEcCCCCC
Q psy5697          41 SENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQ-LGWRFSNNTVIAYV--KDLRI--ALSNG----SLMFPPFPET  108 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~-i~W~~~dg~~i~~~--~~~~~--~~~~G----sL~i~~~~~~  108 (145)
                      .....+|.|.. +.. ....|  +.|.|.+.|+|+|. |+|++ +|..+...  .+...  ...++    +|.|.++..+
T Consensus         9 l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (122)
T 2cry_A            9 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   86 (122)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             EEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEE-CCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChh
Confidence            44566888877 555 33333  89999999999997 99985 67776532  22211  12233    7999887655


Q ss_pred             CCCCCCCC-eEEEEEEEcCCCceE
Q psy5697         109 GFRPDVHS-TVYRCRASNEAGVIL  131 (145)
Q Consensus       109 ~~~~~~d~-G~Y~C~A~N~~G~~~  131 (145)
                            |+ |.|+|.|+|.+|...
T Consensus        87 ------D~~G~Y~C~a~N~~G~~~  104 (122)
T 2cry_A           87 ------DFQTIYNCTAWNSFGSDT  104 (122)
T ss_dssp             ------HHHSCEEEEEECSSCEEE
T ss_pred             ------hCCceEEEEEECCCCeEE
Confidence                  78 999999999999973

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.44  E-value=8.8e-13  Score=95.20  Aligned_cols=89  Identities=19%  Similarity=0.257  Sum_probs=64.7

Q ss_pred             CCCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCc-eEE-eeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIA-LSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~-~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.|+..|.+ ...  ..+.|.|.+.|.|.|.|+|++ +|..+...... ... ..+|  +|.|.++..+      |+
T Consensus         2 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~   74 (197)
T 2j8h_A            2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDD------DA   74 (197)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCCCSSSEEEEEETTTEEEEEECSCCGG------GC
T ss_pred             CCCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEE-CCEECccCCCcEEEEEcCCCEEEEEECcCCHH------hC
Confidence            357899888877 222  339999999999999999985 77777543222 222 2345  8999888765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.|.|..|.. .+..+.|..
T Consensus        75 G~Y~C~~~n~~g~~~~~~~l~V~~   98 (197)
T 2j8h_A           75 TVYQVRATNQGGSVSGTASLEVEV   98 (197)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCceeEEEEEEEcC
Confidence            99999999999986 444555553

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.44  E-value=1e-12  Score=95.50  Aligned_cols=75  Identities=16%  Similarity=0.248  Sum_probs=57.4

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE--EEE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR--FVH  136 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~--~v~  136 (145)
                      .+.|.|.+ .|+|.|.|+|+ +||..+.... .+....+++|.|.++..+      |+|.|+|.|+|.+|...+.  .+.
T Consensus       128 ~~~l~C~~~~~~p~~~v~W~-~~~~~l~~~~-~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~~s~~~~l~  199 (212)
T 2v9r_A          128 PAVMECQPPRGHPEPTISWK-KDGSPLDDKD-ERITIRGGKLMITYTRKS------DAGKYVCVGTNMVGERESEVAELT  199 (212)
T ss_dssp             CEEEECBCCCEESCCEEEEE-ETTEEECTTS-TTEEEETTEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             cEEEEEecCCCCCCCEEEEE-ECCccCCCCc-ceEEccCCeEEEeeCCHh------hCeeEEEEEecccCceecceEEEE
Confidence            38999999 99999999998 4888876543 235556889999887655      8999999999999987553  556


Q ss_pred             EEeccC
Q psy5697         137 VKADSR  142 (145)
Q Consensus       137 v~~~~~  142 (145)
                      |...+.
T Consensus       200 V~~~P~  205 (212)
T 2v9r_A          200 VLERPS  205 (212)
T ss_dssp             EEC---
T ss_pred             EEeCch
Confidence            554443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.44  E-value=1.6e-12  Score=93.18  Aligned_cols=111  Identities=12%  Similarity=0.126  Sum_probs=69.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEc---cCC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRF---SNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~---~dg   82 (145)
                      ..|++.|.|...+   .......        .....+|.+...+.. ..  +..+.|.|.+.|+| .|+|+|++   .++
T Consensus        58 ~~d~G~Y~C~~~n---~~~~~~~--------l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~  126 (184)
T 3b5h_A           58 DDQWGEYSCVFLP---EPMGTAN--------IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED  126 (184)
T ss_dssp             GGCCEEEEEEEES---TTSCEEE--------EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSC
T ss_pred             hhhCeEEEEEEEC---CcCcEEE--------EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCC
Confidence            4677888887765   1111111        112346666666644 12  23399999999999 89999986   344


Q ss_pred             eEeeccc-CceEEeeCC---cEEEcCCC-CCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          83 TVIAYVK-DLRIALSNG---SLMFPPFP-ETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        83 ~~i~~~~-~~~~~~~~G---sL~i~~~~-~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      ..+.... +...+..++   +|.|.++. .+      |+|.|+|.|+|.+|...+. +.|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d~G~Y~C~a~N~~g~~~~~-~~l~  180 (184)
T 3b5h_A          127 KALMNGSESRFFVSSSQGRSELHIENLNMEA------DPGQYRCNGTSSKGSDQAI-ITLR  180 (184)
T ss_dssp             EECCTTGGGTEEEEEETTEEEEEECSCCTTT------SSEEEEEEEEETTEEEEEE-EEEE
T ss_pred             EEeecCCCCEEEEEecCCeeEEEEeeccccc------cCceEEEEEEeCCCcceEE-EEEE
Confidence            4443221 222333333   79998876 55      8999999999999997433 4443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.43  E-value=5.1e-13  Score=98.13  Aligned_cols=124  Identities=12%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEc-CCC-CC--ccCeEEEeeEeccCCCEEEEEcc---CC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKS-APG-GN--RTRGLELTRQTRYEPSQLGWRFS---NN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~-p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~---dg   82 (145)
                      ..|++.|.|...+..........  ..  .......+|.++.. |.. ..  +..+.|.|.+.|+|.|.|+|++.   ||
T Consensus        85 ~~d~G~Y~C~~~n~~~~~~~~~~--l~--V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g  160 (231)
T 3ojm_B           85 PSDKGNYTCVVENEYGSINHTYH--LD--VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG  160 (231)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEE--EE--EECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTT
T ss_pred             cccCEEEEEEEecccCcccccEE--EE--EEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCC
Confidence            67888888887554332211111  11  11112234544433 232 12  23389999999999999999862   66


Q ss_pred             eEeecccCce--E-------EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEeccCC
Q psy5697          83 TVIAYVKDLR--I-------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKADSRI  143 (145)
Q Consensus        83 ~~i~~~~~~~--~-------~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~~  143 (145)
                      ..+.......  .       ...+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|...+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEA------DAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             BSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             ccccCCCcceEeEecccccccCCccEEEEecCCHH------HCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            6654322111  1       112357999887655      8999999999999998 4446666654443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.43  E-value=1.6e-12  Score=99.02  Aligned_cols=71  Identities=23%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|+|.|.|+|+ +||..+...........+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       212 ~~l~C~~~g~p~p~v~W~-~~g~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          212 MTFSCRASGSPEPAISWF-RNGKLIEENEKYILKGSNTELTVRNIINS------DGGPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             EEEECBCCCBSCCEEEEE-ETTEECCCTTTEEECSTTCEEEEESCCST------TCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             EEEEEEeecCCCCeEEEE-ECCEECcCCccEEEcCCccEEEEeeCCcc------cCEEEEEEEEECCCceeeeEEEEEE
Confidence            899999999999999997 58888765443222234568999988655      8999999999999998 44455554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.43  E-value=7.4e-13  Score=97.48  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=63.8

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--C-CcEEEcCCC-CCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--N-GSLMFPPFP-ETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~-GsL~i~~~~-~~~~~~~~d~  116 (145)
                      ..+|.|+..|.+ ....  .+.|.|.+.|.|.|.|+|++ ||..+...........  + .+|.|.++. .+      |+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d~   76 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPR------DE   76 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEE-TTEECCCTTEEEEEEGGGTEEEEEECSCCTTT------TC
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEE-CCcCCCCCceeEEEEcCCCceEEEEeccCCCC------CC
Confidence            467899988887 2233  39999999999999999974 7777754321112222  2 269998873 44      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.|.|..|.. .+..+.|..
T Consensus        77 G~Y~C~a~n~~g~~~~~~~l~V~~  100 (212)
T 2yd6_A           77 AIYECVASNNVGEISVSTRLTVLR  100 (212)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEEec
Confidence            99999999999986 344566654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.43  E-value=5.8e-13  Score=98.25  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             CCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCce-EEe---eCCcEEEcCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLR-IAL---SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~-~~~---~~GsL~i~~~~~~~~~~~~d  115 (145)
                      ...+|.| ..|.+ ..  +..+.|.|.+.|+|.|.|+|++ ||..+......+ .+.   .+++|.|.++..+      |
T Consensus        16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~------d   87 (215)
T 3mtr_A           16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN------D   87 (215)
T ss_dssp             CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEE-TTEESSCSSSCSEEEEEETTEEEEEECCCSGG------G
T ss_pred             eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEE-CCeECCCCCCccEEEecCCCeeEEEEecCChh------h
Confidence            3456777 45655 22  2339999999999999999974 888876432112 222   2358999888655      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEecc
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      +|.|+|.|.|..|.. .+..+.|...+
T Consensus        88 ~G~Y~C~a~n~~g~~~~~~~l~v~~~P  114 (215)
T 3mtr_A           88 FGNYNCTAVNRIGQESLEFILVQADTP  114 (215)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECCCC
T ss_pred             CeEEEEEEEECCCceEEEEEEEECCCC
Confidence            999999999999987 33344444333

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.42  E-value=6e-13  Score=105.37  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.........        ......+|.+...|.+ ..  +..+.|.|.+.|+|+|+|+|+ +||..+.
T Consensus       279 ~~d~G~Y~C~a~n~~g~~~~~~--------~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~-~~g~~i~  349 (388)
T 2v5m_A          279 VEDSGKYLCVVNNSVGGESVET--------VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM-KDGKAIG  349 (388)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEE--------EEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEE-ETTEECS
T ss_pred             HHHCeEEEEEEecCCCceeEEE--------EEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEE-ECCEECc
Confidence            4577788887765443321111        1122235666666654 22  233999999999999999997 4887764


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      .        .+++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.
T Consensus       350 ~--------~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~  386 (388)
T 2v5m_A          350 H--------SESVLRIESVKKE------DKGMYQCFVRNDRESAEASAELK  386 (388)
T ss_dssp             C--------CSSEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEE
T ss_pred             c--------CCCEEEEecCChh------hCEEEEEEEEcCCCcEEEEEEEE
Confidence            2        2568999887655      8999999999999987 333443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.42  E-value=3.4e-12  Score=91.58  Aligned_cols=107  Identities=11%  Similarity=0.006  Sum_probs=70.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeEeccCCC-EEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQTRYEPS-QLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.....  .+.  ..+.      .+|.++..+....  +..+.|.|.+.|.|++ +|+|++ ||..+.
T Consensus        63 ~~d~G~Y~C~~~n~~~s~--~~~--l~V~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k-~g~~~~  131 (175)
T 1fnl_A           63 VNDSGEYRCQTNLSTLSD--PVQ--LEVH------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDRK  131 (175)
T ss_dssp             GGGCEEEEEECSSSCCCC--CEE--EEEE------CSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEE-TTEEEE
T ss_pred             cccCEEEEEEeeCCcccc--cEE--EEEe------CCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEE-CCeEcc
Confidence            567788888775522111  111  1111      2344555444322  2338999999988765 999984 787763


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      .      ...+++|.|.++..+      |+|.|+|.|.|..|...+..+.|..
T Consensus       132 ~------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          132 Y------FHHNSDFHIPKATLK------DSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             E------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             C------CCCCCEEEEcccChh------hCeEEEEEEEcCCCCccCccEEEEE
Confidence            2      234679999888665      8999999999998877666666553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.42  E-value=1.1e-12  Score=99.95  Aligned_cols=71  Identities=17%  Similarity=0.289  Sum_probs=52.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeeccc---CceEEee-CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVK---DLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~---~~~~~~~-~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                      .+.|.|.+.|+|.|+|+|+ +||..+....   ....... +++|.|.++..+      |+|.|+|.|+|.+|.. +..+
T Consensus       213 ~v~l~C~~~g~p~p~i~W~-~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~-~~~~  284 (291)
T 1qz1_A          213 SVTLVCDADGFPEPTMSWT-KDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN------DEAEYVCIAENKAGEQ-DASI  284 (291)
T ss_dssp             CEEEEEEEEEESCCEEEEE-ETTEECCCC--CCSSEEECTTSCEEEECSCCGG------GCEEEEEEEEETTEEE-EEEE
T ss_pred             eEEEEEEEEEeCCCcEEEE-ECCEECcCCCCCCcceEEcCCCcEEEEEecChh------cCEEEEEEEEeCCCce-EEEE
Confidence            3899999999999999998 4888776432   1222323 347999888655      8999999999999986 3444


Q ss_pred             EEE
Q psy5697         136 HVK  138 (145)
Q Consensus       136 ~v~  138 (145)
                      .|.
T Consensus       285 ~l~  287 (291)
T 1qz1_A          285 HLK  287 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.42  E-value=1.2e-12  Score=93.97  Aligned_cols=89  Identities=17%  Similarity=0.165  Sum_probs=66.3

Q ss_pred             CCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~  116 (145)
                      ...+|.|+..|.+ ....|  +.|.|.+.|.|.|.++|++ +|..+...... ....++   +|.|.++..+      |+
T Consensus         4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~------d~   75 (197)
T 3lcy_A            4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKY-KMSSDGRTHTLTVMTEEQE------DE   75 (197)
T ss_dssp             CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEE-TTEEECCCSSE-EEEESSSEEEEEEECCSGG------GC
T ss_pred             cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEE-CCEECCCCccE-EEEeCCCEEEEEEecCCcc------CC
Confidence            3567888888877 22333  9999999999999999985 77777544332 333444   7999888655      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.|.|..|.. .+..+.|..
T Consensus        76 G~Y~C~~~n~~~~~~~~~~l~v~~   99 (197)
T 3lcy_A           76 GVYTCIATNEVGEVETSSKLLLQA   99 (197)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             EEEEEEEECCCCceeEEEEEEEEc
Confidence            99999999999987 444666653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.42  E-value=2.5e-12  Score=94.43  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=64.2

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEE--eeCC--cEEEcCCCC-CCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA--LSNG--SLMFPPFPE-TGFRPDVH  115 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~--~~~G--sL~i~~~~~-~~~~~~~d  115 (145)
                      ..+|.|+..|.+ ....  .+.|.|.+.|.|.|.|+|++ ||..+.........  ..+|  +|.|.++.. +      |
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~------d   76 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGISILRIEPVRAGR------D   76 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCTTSTTEEEEEETTTEEEEEESSCCTTT------T
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEE-CCEECCCCcceeEEEEcCCCeEEEEEEecCCCC------c
Confidence            468999999887 2233  39999999999999999985 88887532222222  2344  799988765 4      8


Q ss_pred             CeEEEEEEEcCCCceEEE--EEEEEe
Q psy5697         116 STVYRCRASNEAGVILSR--FVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~--~v~v~~  139 (145)
                      +|.|+|.|.|..|...+.  .+.|..
T Consensus        77 ~G~Y~C~~~n~~g~~~~~~~~l~V~~  102 (212)
T 2yd1_A           77 DAPYECVAENGVGDAVSADATLTIYE  102 (212)
T ss_dssp             CSEEEEEEECSSSCEEEEEEEEEEEC
T ss_pred             CceEEEEEEeCCCCeEEeeEEEEEec
Confidence            999999999999995444  444443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=5.8e-13  Score=88.49  Aligned_cols=84  Identities=12%  Similarity=0.039  Sum_probs=57.6

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccC--ceEEeeC--CcEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKD--LRIALSN--GSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~--~~~~~~~--GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      |+.|++.|.+ ....|  +.|.|.+.| |+|.|+|+ +||..+.....  ......+  .+|.|.++..+      |+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~-k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~   78 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWF-KNGEEIIPGPKSRYRIRVEGKKHILIIEGATKA------DAAE   78 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEE-ETTEECCCSTTCSEEEEEETTEEEEEEEEECTT------TCSE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEE-ECCEECCCCCceEEEEEEcCCEEEEEECCCCcc------cCEE
Confidence            3446666666 23334  899999999 88999998 48888765432  2233222  37999888765      8999


Q ss_pred             EEEEEEcCCCceEEEEEEEEec
Q psy5697         119 YRCRASNEAGVILSRFVHVKAD  140 (145)
Q Consensus       119 Y~C~A~N~~G~~~s~~v~v~~~  140 (145)
                      |+|.|.|   ...+..+.|...
T Consensus        79 Y~C~a~n---~~~~~~l~V~~~   97 (103)
T 1x44_A           79 YSVMTTG---GQSSAKLSVDLK   97 (103)
T ss_dssp             EEEEETT---EEEEEEEEEECC
T ss_pred             EEEEECC---CcEEEEEEEeCC
Confidence            9999999   234456666643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.42  E-value=1.3e-12  Score=100.83  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=60.7

Q ss_pred             CCCCEEEEcCCCC-Ccc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCC-CCCCCCCCC
Q psy5697          44 EHYPFRIKSAPGG-NRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPE-TGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~~-~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~-~~~~~~~d~  116 (145)
                      ..+|.|+..|.+. ...  .+.|.|.+.|+|.|+|+|+ +||..+...........+|   +|.|.++.. +      |+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~-k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~------D~   76 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWN-KKGKKVNSQRFETIEFDESAGAVLRIQPLRTPR------DE   76 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC--------CTTEEEEEETTTTEEEEEECSCCTTT------TC
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEE-ECCEECCCCceEEEEecCCCceEEEEecccccC------CC
Confidence            5689999999872 233  3999999999999999997 5777775332111222443   699988764 4      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEec
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      |.|+|.|.|..|.. .+..+.|...
T Consensus        77 G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           77 NVYECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             SEEEEEEECSSCEECCEEEEEEECG
T ss_pred             eEEEEEEECCCCeEEEEEEEEEecc
Confidence            99999999999986 4556666543

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.42  E-value=7.4e-13  Score=86.61  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .+.|.|.+.|  .|.|+|+ +||..+....  +....+++|.|.++..+      |+|.|+|.|.|..|.. .+..+.|.
T Consensus        18 ~~~l~C~~~~--~p~v~W~-k~g~~~~~~~--~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~   86 (95)
T 4hwu_A           18 SLELQCMLKD--AAVISWT-KDGVHLGPNN--RTVLIGEYLQIKGATPR------DSGLYACTAARTVDSETWIFMVNVT   86 (95)
T ss_dssp             CEEEECCCCT--TCEEEEE-ETTEEECCCS--SEEEETTEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEEEeCC--CCEEEEE-ECCEECCCCc--eEEEeCCEEEECcCCcc------cCEEEEEEEccCCCcEEEEEEEEEe
Confidence            3999999998  5899998 5888875432  34456789999988765      8999999999999976 33355554

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.41  E-value=4.6e-13  Score=98.27  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeecc-------cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYV-------KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~-------~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      .+.|.|.+ .|.|.|+|+|++ +|..+...       ........+++|.|.++..+      |+|.|+|.|+|.+|...
T Consensus       125 ~v~l~C~~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~  197 (217)
T 2vr9_A          125 TALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI------DEGNYKCIAQNLVGTRE  197 (217)
T ss_dssp             CEEECCBCCCEESCCEEEEEE-TTEEECCCCCC---CCCSEEEETTTEEEESSCCST------TCEEEEEEEEETTEEEE
T ss_pred             eEEEEEECCCCCCCCeEEEEE-CCcCCCcccccccccCCcEEecCCCcEEEeeCCHH------HCeEEEEEEEcccceec
Confidence            38999999 999999999985 78877621       12234456789999988665      89999999999999986


Q ss_pred             EEEEEEE
Q psy5697         132 SRFVHVK  138 (145)
Q Consensus       132 s~~v~v~  138 (145)
                      +..+.+.
T Consensus       198 ~~~~~lv  204 (217)
T 2vr9_A          198 SSYAKLI  204 (217)
T ss_dssp             CCCEEEE
T ss_pred             cccEEEE
Confidence            5544333

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.41  E-value=2e-12  Score=98.88  Aligned_cols=118  Identities=13%  Similarity=-0.033  Sum_probs=73.1

Q ss_pred             eecCc-eeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCE-EEEEccCCeE
Q psy5697          10 LADAD-TYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQ-LGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~-i~W~~~dg~~   84 (145)
                      ..|++ .|.|...+......+.   ............+|.+...|.+ ....|  +.|.|.+.|.|.|. |+|++ +|..
T Consensus       154 ~~d~G~~Y~C~a~n~~~~~~s~---~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~-~~~~  229 (290)
T 2o26_X          154 RAYHRLCVRCAAQRDGTWLHSD---KFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK-MNPQ  229 (290)
T ss_dssp             GGGTTCEEEEEEEETTEEEECC---CEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEE-ESSS
T ss_pred             HHHCCCEEEEEEEECCceEEeE---EEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEec-CCCC
Confidence            56777 8888775532211110   0011111123467888777765 23333  89999999999997 99986 5544


Q ss_pred             e----ecccCce-----EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          85 I----AYVKDLR-----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        85 i----~~~~~~~-----~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +    .......     .....++|.|.++..+      |+|.|+|.|+|.+|.. +..+.|.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~g~~-~~~~~l~  285 (290)
T 2o26_X          230 PQHIAQVKHNSWHRGDFNYERQETLTISSARVD------DSGVFMCYANNTFGSA-NVTTTLK  285 (290)
T ss_dssp             EEECCCEECCEEEEETTEEEEEEEEEESSCCSS------SCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             CccceeecccccccCceeeEEEEEEEEcCCCcc------cCeEEEEEEeCCCCcE-EEEEEEE
Confidence            2    2111111     2234568999888655      8999999999999998 3444443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.41  E-value=4.8e-12  Score=90.74  Aligned_cols=71  Identities=14%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCC-CCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPE-TGFRPDVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                      .+.|.|.+.|+|.|+|+|++ ||..+............  ++|.|.++.. +      |+|.|+|.|+|.+|.. +..+.
T Consensus       120 ~~~l~C~~~~~p~p~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~------d~G~Y~C~a~n~~g~~-~~~~~  191 (197)
T 3lcy_A          120 TLRLHVMYIGRPVPAMTWFH-GQKLLQNSENITIENTEHYTHLVMKNVQRKT------HAGKYKVQLSNVFGTV-DAILD  191 (197)
T ss_dssp             CEEEEEEEEEESCCEEEEEE-TTEECCCCSSEEEEECSSEEEEEESSCCHHH------HCEEEEEEEECSSCEE-EEEEE
T ss_pred             eEEEEEEEeeeeCCeeEEeE-CCEECCCCCceEEEEcCCEEEEEEccccchh------hCceEEEEEEcCcCce-EEEEE
Confidence            38999999999999999984 78887654333222222  4799987752 3      7999999999999997 33444


Q ss_pred             EE
Q psy5697         137 VK  138 (145)
Q Consensus       137 v~  138 (145)
                      |.
T Consensus       192 l~  193 (197)
T 3lcy_A          192 VE  193 (197)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.41  E-value=8e-13  Score=95.84  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=50.6

Q ss_pred             CeEEEeeE-eccCCCEEEEEccC-CeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSN-NTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~d-g~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      .+.|.|.+ .|.|.|.|+|++.+ +..+...  ......+++|.|.++..+      |+|.|+|.|+|.+|.. +..+.|
T Consensus       138 ~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~g~~-~~~~~l  208 (214)
T 3jz7_A          138 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP--WLAEMTSPVISVKNASSE------YSGTYSCTVQNRVGSD-QCMLRL  208 (214)
T ss_dssp             CEEEEEECSBCCSSCEEEEEECSTTCCCCGG--GGGGTTSSEEEECSCCGG------GCEEEEEEEECSSCEE-EEEEEE
T ss_pred             cEEEEecCCCCCCCCEEEEEECCCCCccCcc--ceeccCCCEEEEecCCHH------HCEEEEEEEEcCCCcE-EEEEEE
Confidence            39999999 99999999998642 2333221  122345679999988765      8999999999999998 333433

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.41  E-value=2.6e-12  Score=102.04  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             eecCceeEeeccccCcccC-CceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPL-GYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+...... ....-. +. .......++.++..|.+ ..  +..+.|.|.+.|+|+|.|+|++ +|..+
T Consensus       186 ~~d~G~Y~C~~~n~~~~~~~~~~~l~-v~-~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~  262 (403)
T 3laf_A          186 PGDSGVYRCSARNPASTRTGNEAEVR-IL-SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVI  262 (403)
T ss_dssp             GGGCEEEEEEEECSSCCCBCCCEEEE-EE-CCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE-TTEEC
T ss_pred             cccCEEEEEEEEcCCCceeccceeEE-Ee-cCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEE-CCeec
Confidence            5678888888765432211 111111 11 11222233456666665 22  3349999999999999999985 77777


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      ...........+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|..
T Consensus       263 ~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~~  311 (403)
T 3laf_A          263 QLRSKKYSLLGGSNLLISNVTDD------DSGTYTCVVTYKNENISASAELTVLV  311 (403)
T ss_dssp             CCSSSSEEEETTTEEEECSCCGG------GCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             cCCCceEEECCccEEEEeCCCHH------HCEEEEEEEEcCCCceEEEEEEEEEC
Confidence            64443445556779999888655      8999999999999987 444666653

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.6e-13  Score=90.93  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=59.3

Q ss_pred             CCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccC---ceEEeeCC---cEEEcCCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKD---LRIALSNG---SLMFPPFPETGFRP  112 (145)
Q Consensus        42 ~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~---~~~~~~~G---sL~i~~~~~~~~~~  112 (145)
                      ..+.+|.|++.|.+ ....  .+.|.|.+.|.| |.|+|++ ||..+.....   ...+..+|   +|.|.++..+    
T Consensus         4 v~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~----   77 (101)
T 2edk_A            4 GSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMK-NGVELTREDSFKARYRFKKDGKRHILIFSDVVQE----   77 (101)
T ss_dssp             SCCCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEE-SSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGG----
T ss_pred             cccCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEE-CCEECCCCCCcceeEEEEECCCEEEEEECCCChh----
Confidence            34567888888877 2233  389999999999 9999984 7877764431   11333344   5899887655    


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697         113 DVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                        |+|.|+|.|.|..   .+..+.|.
T Consensus        78 --D~G~Y~C~a~n~~---~~~~l~V~   98 (101)
T 2edk_A           78 --DRGRYQVITNGGQ---CEAELIVE   98 (101)
T ss_dssp             --GCSBEEEECSSCE---ECCBEEEE
T ss_pred             --hCEEEEEEEcCCc---EEEEEEEe
Confidence              8999999999832   23345554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.40  E-value=1.8e-12  Score=98.57  Aligned_cols=117  Identities=12%  Similarity=0.027  Sum_probs=73.3

Q ss_pred             eecCceeEeecc-ccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEec-cCCCEEEEEccCCeE
Q psy5697          10 LADADTYIIADR-SLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTR-YEPSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G-~P~P~i~W~~~dg~~   84 (145)
                      ..|++.|.|... .........+.    .........+|.+...|... .  +..+.|.|.+.| .|.|.|+|++ +|..
T Consensus       153 ~~d~G~Y~C~a~~~~~~~~~~~~~----l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~  227 (289)
T 3ejj_X          153 VLDSNTYVCKTMVNGRESTSTGIW----LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR-GDTK  227 (289)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEE----EEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEE-TTEE
T ss_pred             cccCEEEEEEEEeCCCccccccEE----EEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEE-CCEE
Confidence            567778888765 22111111111    11111223578888887762 2  333999999999 8999999985 7777


Q ss_pred             eecccC----ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697          85 IAYVKD----LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus        85 i~~~~~----~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +.....    ......+++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~s~~L~~  279 (289)
T 3ejj_X          228 LEIPLNSDFQDNYYKKVRALSLNAVDFQ------DAGIYSCVASNDVGTRTATMNFQV  279 (289)
T ss_dssp             CCCCEEEEECSSSEEEEEEEEESSCCSS------SCEEEEEEEECSSCEEEEEEEEEC
T ss_pred             eeccCCcccccceEEeeEEEEEEeeccc------CCEEEEEEEEcCCCCccccEEEEE
Confidence            643211    011223568999888765      8999999999999997 3334433

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3e-13  Score=90.84  Aligned_cols=89  Identities=6%  Similarity=-0.102  Sum_probs=61.7

Q ss_pred             CCCCEEEEcCCC-CCcc--CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          44 EHYPFRIKSAPG-GNRT--RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      ..+|.|++.+.+ ....  .+.|.|.+.|.|. |.++|+ +||..+....+......++  +|.|.++..+      |+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~-k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~------D~G   78 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWT-VGGKTVGSSSRFQATRQGRKYILVVREAAPS------DAG   78 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCB-SSSSBCSBCSSCEEEEETTEEEEEECSCCTT------TCS
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEE-ECCEECCCCCCEEEEEcCCEEEEEECCCCHH------HCE
Confidence            445677777776 2233  3999999999985 489997 5888876544333333222  7999988765      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEEeccC
Q psy5697         118 VYRCRASNEAGVILSRFVHVKADSR  142 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~~~~~  142 (145)
                      .|+|.|.|..   .+..+.|...+.
T Consensus        79 ~Y~C~a~~~~---~~a~L~V~~~p~  100 (104)
T 2eny_A           79 EVVFSVRGLT---SKASLIVRERSG  100 (104)
T ss_dssp             CEEEEETTEE---EEECEEEECCCS
T ss_pred             EEEEEECCee---EEEEEEEeCCCc
Confidence            9999997642   455677775443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.40  E-value=5.5e-13  Score=105.57  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=66.9

Q ss_pred             CCCEEEEcCCCCC----ccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCC-CCCCCCCCCe
Q psy5697          45 HYPFRIKSAPGGN----RTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPE-TGFRPDVHST  117 (145)
Q Consensus        45 ~~P~~i~~p~~~~----~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~-~~~~~~~d~G  117 (145)
                      .+|.|+.+|.+..    ..|  +.|.|.+.|+|.|+|+|+ +||..+......+....+|+|.|.++.. +      |+|
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~-k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~------D~G   75 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWK-MNGTELKMGPDSRYRLVAGDLVISNPVKAK------DAG   75 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEE-ETTEECCCSTTSSEEEETTEEEEESCCHHH------HCE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEE-ECCEECCcCCCccEEeeCCeEEEecccccc------cCE
Confidence            4789999998722    233  899999999999999998 4888876443344556789999987653 3      899


Q ss_pred             EEEEEEEcCCCceEEE--EEEEE
Q psy5697         118 VYRCRASNEAGVILSR--FVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~--~v~v~  138 (145)
                      .|+|.|+|..|...+.  .+.|.
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~   98 (382)
T 1cs6_A           76 SYQCVATNARGTVVSREASLRFG   98 (382)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEEEcCCcEEEecceEEEee
Confidence            9999999999987654  44444

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.40  E-value=3e-13  Score=100.49  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCC-CCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPF-PETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~-~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.  |+|.|.|+|+ +||..+.... .......+++|.|.++ ..+      |+|.|+|.|+|..|...+..+.|.
T Consensus       131 v~L~C~--g~p~p~i~W~-k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~------D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          131 VILTCP--QYPGSEILWQ-HNDKNIGGDEDDKNIGSDEDHLSLKEFSELE------QSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             EEEECS--CCCSSCEEEE-ETTEEESCCTTCTTEEEETTEEEETTCCHHH------HCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             EEEEcC--CCCCCceEEE-ECCEECCCccCCceEecCCCEEEEeeCCccc------cCEEEEEEeccCCCCceeEEEEEE
Confidence            899999  9999999997 5788775432 2223446899999988 665      899999999999998767777776


Q ss_pred             e
Q psy5697         139 A  139 (145)
Q Consensus       139 ~  139 (145)
                      +
T Consensus       202 ~  202 (204)
T 1sy6_A          202 A  202 (204)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.40  E-value=1.5e-12  Score=93.58  Aligned_cols=88  Identities=18%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.|+..|.+ ..  +..+.|.|.+.|.|.|.|+|++ ||..+....  +.+....++  +|.|.++..+      |+
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~   75 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAKLTIPAVTKA------NS   75 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEE-SSSBCCTTTSTTCEEEEETTEEEEEESSCCGG------GC
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEE-CCEEcccccCCceEEEeCCCEEEEEECCCCcc------cC
Confidence            457888888877 22  2339999999999999999985 777765432  333444455  7999888655      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEE
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |.|+|.|.|..|.. .+..+.|.
T Consensus        76 G~Y~C~~~n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           76 GRYSLKATNGSGQATSTAELLVK   98 (194)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEcCCceEeEEEEEEEc
Confidence            99999999999987 33455554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.40  E-value=3e-12  Score=98.67  Aligned_cols=120  Identities=17%  Similarity=0.105  Sum_probs=79.5

Q ss_pred             ecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeec
Q psy5697          11 ADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAY   87 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~   87 (145)
                      .|++.|.|...+..........-. |..........|.+...|.. ..  +..+.|.|.+.|+|.|.|+|++ ||..+..
T Consensus        74 ~D~G~Y~C~a~n~~g~~~~~~~l~-V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k-~~~~~~~  151 (304)
T 2yd9_A           74 RDENVYECVAQNSVGEITVHAKLT-VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDP  151 (304)
T ss_dssp             TTCSEEEEEEECSSCEECCEEEEE-EECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEE-TTEECCG
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEE-EeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEE-CCEECcC
Confidence            788889888766543322111111 22222222334788888766 22  2339999999999999999985 7877754


Q ss_pred             cc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE--EEEEEE
Q psy5697          88 VK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK  138 (145)
Q Consensus        88 ~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s--~~v~v~  138 (145)
                      ..  .......+|+|.|.++..+      |+|.|+|.|+|..|...+  ..+.|.
T Consensus       152 ~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          152 SASNGRIKQLRSGALQIESSEET------DQGKYECVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             GGGTTSEEECTTSCEEECSCCGG------GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCcceEEeCCCeEEEEccCCcc------cCEEEEEEEEeCCCCEEeccEEEEEE
Confidence            32  1234566789999988655      899999999999998753  345543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=99.47  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             CCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCc-eE-EeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          45 HYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RI-ALSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~-~~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      .+|.|+..|.+ ...  ..+.|.|.+.|.|.|+|+|++ +|..+...... .. ...+|  +|.|.++..+      |+|
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G   75 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDD------DAT   75 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEE-TTEECCCCSSSEEEEEETTTEEEEEESSCCGG------GCS
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCEEcccCCCeEEEEECCCCEEEEEEccCChh------hCe
Confidence            57999999887 223  339999999999999999985 77776543222 22 23455  8999988765      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEEE
Q psy5697         118 VYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .|+|.|.|..|.. .+..+.|.
T Consensus        76 ~Y~C~a~n~~g~~~~~~~l~V~   97 (305)
T 2nzi_A           76 VYQVRATNQGGSVSGTASLEVE   97 (305)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEcCCCCccceEEEEEe
Confidence            9999999999986 33455554

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.40  E-value=7.3e-13  Score=86.40  Aligned_cols=60  Identities=10%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+.|.|.+.| |+|.|+|+ +||.++...........++  +|.|.++..+      |+|.|+|.|.|..
T Consensus        13 ~v~l~C~vs~-p~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~   74 (84)
T 2lu7_A           13 DLELVVHLSG-PGGPVRWY-KDGERLASQGRVQLEQAGARQVLRVQGARSG------DAGEYLCDAPQDS   74 (84)
T ss_dssp             CEEEECCCSC-CSTTCEEE-ETTEECCCCSSEEEEECSSCEEEEESSCSST------TCEEEEEECTTTC
T ss_pred             CEEEEEEECC-CCcEEEEE-ECCEEccccccEEEeecCCeEEEEecCCCCc------ccEEEEEEECCEE
Confidence            3999999977 99999998 5899987654433333333  6999888765      8999999997754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.40  E-value=8.9e-13  Score=87.12  Aligned_cols=86  Identities=9%  Similarity=0.089  Sum_probs=55.2

Q ss_pred             CCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecc------cCceEEe----eCCcEEEcCCCCCCCCC
Q psy5697          46 YPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYV------KDLRIAL----SNGSLMFPPFPETGFRP  112 (145)
Q Consensus        46 ~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~------~~~~~~~----~~GsL~i~~~~~~~~~~  112 (145)
                      +|.|+..|.+ ...  ..+.|.|.+.|.|.|.|.|++.++..+...      .......    .+++|.|.++..+    
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~----   81 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS----   81 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGG----
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChh----
Confidence            4556666666 222  339999999999999999986443232211      1111211    3458999988765    


Q ss_pred             CCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         113 DVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                        |+|.|.|.|.| .|.. .+..+.|.
T Consensus        82 --D~G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           82 --DEGQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             --GCEEEEEEECS-SSCEEEEEEEEEE
T ss_pred             --HCeEEEEEEEc-CCCcEEEEEEEEE
Confidence              89999999999 7765 33344444

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.39  E-value=4.2e-12  Score=96.48  Aligned_cols=89  Identities=21%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             CCCCEEEEcCCCC-C--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee--CCcEEEcCCCCCCCCCCCCCeE
Q psy5697          44 EHYPFRIKSAPGG-N--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS--NGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        44 ~~~P~~i~~p~~~-~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~--~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      ..||.|...|.+. .  +..+.|.|.+.|.|.|.|+|++ ||..+......+....  +++|.|.++..+      |+|.
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~   75 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTATLTVLKVTKG------DAGQ   75 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCSSSSEEEEEETTEEEEEESSCCGG------GCEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEE-CCEECcCCCcEEEEEcCCEEEEEEecCCcc------cCEE
Confidence            4578999988872 2  3349999999999999999984 7887764433332222  348999888665      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEe
Q psy5697         119 YRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |+|.|+|..|.. .+..+.|..
T Consensus        76 Y~C~~~n~~g~~~~~~~l~V~~   97 (284)
T 2rik_A           76 YTCYASNVAGKDSCSAQLGVQE   97 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCceEEEEEEEEccC
Confidence            999999999986 344555543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.38  E-value=1.6e-12  Score=101.11  Aligned_cols=122  Identities=13%  Similarity=0.096  Sum_probs=73.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEc-CCC-CC--ccCeEEEeeEeccCCCEEEEEcc---CC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKS-APG-GN--RTRGLELTRQTRYEPSQLGWRFS---NN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~-p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~---dg   82 (145)
                      ..|++.|.|...+..........    .........+|.+... |.+ ..  +..+.|.|.+.|+|.|.|+|++.   ||
T Consensus       189 ~~d~G~Y~C~a~n~~g~~~~~~~----l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g  264 (334)
T 1ry7_B          189 PSDRGNYTCVVENKFGSIRQTYT----LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG  264 (334)
T ss_dssp             GGGCCCEEEEEEETTEEEEEEEE----EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGG
T ss_pred             cccCEEEEEEEEeCCCCEEEEEE----EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCC
Confidence            56778888877654432211111    1111111234544332 233 12  23389999999999999999864   66


Q ss_pred             eEeecccCce-EEeeC----------CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEecc
Q psy5697          83 TVIAYVKDLR-IALSN----------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus        83 ~~i~~~~~~~-~~~~~----------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      ..+....... ....+          ++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|...+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          265 SKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE------DAGEYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             CSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTT------SCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             ccccCCCCeeEEEeecCccccccccccEEEEccCCHH------HCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence            6654322111 11111          27999888665      8999999999999998 45567776433

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.38  E-value=1.2e-12  Score=113.55  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.....        ..........+|.|+..|.+ ..  +..+.|.|.+.|+|+|+|+|++ ++..+.
T Consensus       686 ~~d~G~Y~C~a~N~~g~~--------~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k-~~~~~~  756 (816)
T 3dmk_A          686 ASHAGNFTCHARNLAGHQ--------QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK-AVGDTP  756 (816)
T ss_dssp             GGGCEEEEEEEECSSCEE--------EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCE-ECSSST
T ss_pred             hhhCEEEEEEEEeCCccE--------EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEe-cCCCCC
Confidence            456777877775543322        11122334567888888877 22  3338999999999999999975 443221


Q ss_pred             c-----ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy5697          87 Y-----VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKAD  140 (145)
Q Consensus        87 ~-----~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~~  140 (145)
                      .     ....+....+|+|.|.++..+      |+|.|+|.|+|.+|+..+.-..+...
T Consensus       757 ~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~G~~~~~v~~~~~~  809 (816)
T 3dmk_A          757 GEYKDLKKSDNIRVEEGTLHVDNIQKT------NEGYYLCEAINGIGSGLSAVIMISVQ  809 (816)
T ss_dssp             TCCBCCCCBTTEEEETTEEEECSCCGG------GCEEEEEEEECSSSSCEEEEEEEEEE
T ss_pred             ccccccccCCCEEecCCEEEECcCChh------hCeEEEEEEEeCCCCCcEEEEEEEee
Confidence            1     111234457889999988765      89999999999999997765555433

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.38  E-value=1.1e-12  Score=95.67  Aligned_cols=107  Identities=10%  Similarity=-0.123  Sum_probs=60.0

Q ss_pred             eecCceeEeeccccCcccC--CceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPL--GYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+......  ..+.  ..+.   ....+|.+...|......|  +.|.|.+.|.| |.|+|++ ||..+
T Consensus        67 ~~D~G~Y~C~a~n~~g~~~~s~~~~--l~V~---~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k-~g~~~  139 (196)
T 2d3v_A           67 EHHAGRYRCYYYSPAGWSEPSDPLE--LVVT---GFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTE-EGDHK  139 (196)
T ss_dssp             GGGCEEEEEEEEETTEECBCCCCEE--EEEE---CSSCCCEEEC-----------CEEEEEESSCC-SEEEEEE-C---C
T ss_pred             hhHCeEEEEEEeCCCCcCCcCccEE--EEec---CCCCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEc-cCCcc
Confidence            5788888888754322111  1111  1111   1123576665553333333  89999999999 9999985 77665


Q ss_pred             ecccCceEEee----CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          86 AYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        86 ~~~~~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ...........    .++|.|.++..+      |+|.|+|.|+|..+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          140 LSWTLDSQLTPSGQFQALFPVGPVTPS------HRWMLRCYGSRRHIL  181 (196)
T ss_dssp             CEEEEECEECTTSCEEEEEECCCCBTT------BCEEEEEEEEETTEE
T ss_pred             cccccccccccCCCceeEEEeeecCcc------cCeeEEEEEEccCCC
Confidence            32111111221    268999888765      899999999998764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.38  E-value=2.2e-12  Score=87.66  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             CeEEEeeEec--cCCCEEEEEccCCeEeec----ccCceE------EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTR--YEPSQLGWRFSNNTVIAY----VKDLRI------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G--~P~P~i~W~~~dg~~i~~----~~~~~~------~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+.|.|.+.|  .|.+.|+|++ +|..+..    ......      ...+++|.|.++..+      |+|.|+|.|+|..
T Consensus        25 ~v~L~C~~~g~p~~~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~   97 (122)
T 3s35_X           25 KLVLNCTARTELNVGIDFNWEY-PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGL   97 (122)
T ss_dssp             CEEEEEEEEECTTCCCEEEEEC-SCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGG------GCEEEEEEEECSS
T ss_pred             eEEEEEEEEcCCCCcEEEEEEC-CCcccCCceeeeeccccccCCceeeEEEEEEECCCCcc------cCEEEEEEEccCC
Confidence            3999999999  5557999985 5443221    011111      123458999988765      8999999999999


Q ss_pred             Cce-EEEEEEEEecc
Q psy5697         128 GVI-LSRFVHVKADS  141 (145)
Q Consensus       128 G~~-~s~~v~v~~~~  141 (145)
                      |.. .+..+.|...+
T Consensus        98 g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           98 MTKKNSTFVRVHEKP  112 (122)
T ss_dssp             CEEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEEeccC
Confidence            987 45566666544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.37  E-value=4.2e-14  Score=121.23  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=0.0

Q ss_pred             eecCceeEeecccc-CcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSL-FPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+. ...... ..    .........+|.|+..+.+ ....|  +.|.|.+.|+|+|+|+|+ +||..+
T Consensus       634 ~~d~G~Y~C~a~n~~~~~~~s-~~----~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~-k~g~~l  707 (772)
T 3v2a_R          634 LQDQGDYVCLAQDRKTKKRHC-VV----RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF-KDNETL  707 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCcEEEEEEEeCCCCeEEE-EE----EeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEE-ECCeEC
Confidence            67788888877552 211100 00    0011123457888877766 23333  899999999999999997 588877


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      ....+......+++|.|.++..+      |+|.|+|.|+|.+|+. .+..+.|..
T Consensus       708 ~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~~~~~~l~V~~  756 (772)
T 3v2a_R          708 VEDSGIVLKDGNRNLTIRRVRKE------DEGLYTCQACSVLGCAKVEAFFIIEG  756 (772)
T ss_dssp             -------------------------------------------------------
T ss_pred             cCCCCeEEcCCCcEEEECcCCHH------HCEEEEEEEEeCCcceeEEEEEEEEC
Confidence            65433323334679999988765      8999999999999998 555777763

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.37  E-value=2.3e-12  Score=93.19  Aligned_cols=86  Identities=10%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEe-ccCCCEEEEEccCCeEeecccC--ceEE-ee--------CCcEEEcCCCCCCC
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKD--LRIA-LS--------NGSLMFPPFPETGF  110 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~--~~~~-~~--------~GsL~i~~~~~~~~  110 (145)
                      +|.|+..|.+ ..  +..+.|.|.+. |.|.|.|+|++ ||..+.....  .+.. ..        +++|.|.++..+  
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~--   78 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS--   78 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEE-TTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST--
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEE-CCEEcccCCCCceEEEEccccccceeeccEEEEEecccc--
Confidence            6788888887 22  33399999999 99999999985 8888764321  1222 22        358999888655  


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697         111 RPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                          |+|.|+|.|.|..|...+..+.|.
T Consensus        79 ----d~G~Y~C~~~~~~~~~~~~~~~l~  102 (195)
T 2c5d_C           79 ----DTGQYQCLVFLGHQTFVSQPGYVG  102 (195)
T ss_dssp             ----TCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ----CCcEEEEEEEeCCCceecccEEEE
Confidence                899999999999988755434433

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=2.6e-12  Score=93.13  Aligned_cols=73  Identities=23%  Similarity=0.347  Sum_probs=54.3

Q ss_pred             CeEEEee-EeccCCCEEEEEccCCe-EeecccC--------ceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTR-QTRYEPSQLGWRFSNNT-VIAYVKD--------LRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~-a~G~P~P~i~W~~~dg~-~i~~~~~--------~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+.|.|. +.|+|.|+|+|++ +|. .+.....        .... ..+++|.|.++..+      |+|.|+|.|+|.+|
T Consensus       121 ~~~l~C~~~~~~p~~~i~W~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g  193 (212)
T 1f97_A          121 RAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF------DSGEYYCQAQNGYG  193 (212)
T ss_dssp             CEEEEEECSCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGG------GCEEEEEEEECSSS
T ss_pred             eEEEEEEcccCcCCCEEEEEe-CCcccccccccccccccCceeEecCCCceEEEEecChh------hCcEEEEEEccccC
Confidence            3899999 7999999999985 777 6653221        1111 34678999888665      89999999999999


Q ss_pred             ce-EEEEEEEEe
Q psy5697         129 VI-LSRFVHVKA  139 (145)
Q Consensus       129 ~~-~s~~v~v~~  139 (145)
                      .. .+..++|..
T Consensus       194 ~~~~s~~~~l~V  205 (212)
T 1f97_A          194 TAMRSEAAHMDA  205 (212)
T ss_dssp             CCEECCCEEEEE
T ss_pred             CccccceEEEEE
Confidence            98 666666664

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.37  E-value=4.7e-12  Score=90.76  Aligned_cols=106  Identities=10%  Similarity=0.083  Sum_probs=69.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeE-eccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQ-TRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a-~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|..........-.+.   +.       .++.++..+....  +..+.|.|.+ .|.|.|+|+|++ ||..+.
T Consensus        60 ~~d~G~Y~C~~~~~~~s~~~~l~---V~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~  128 (176)
T 1f2q_A           60 FEDSGEYKCQHQQVNESEPVYLE---VF-------SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALK  128 (176)
T ss_dssp             GGGCEEEEEECTTSSCCCCEEEE---EE-------CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEE-TTEECC
T ss_pred             eecCEEEEEEcCCccccccEEEE---Ee-------CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEE-CCEEEe
Confidence            67888888887653222210111   11       3455555554422  2339999999 577888999985 887763


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      ..      ..+++|.|.++..+      |+|.|+|.|.|..|...+..+.|.
T Consensus       129 ~~------~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~s~~~~l~  168 (176)
T 1f2q_A          129 YW------YENHNISITNATVE------DSGTYYCTGKVWQLDYESEPLNIT  168 (176)
T ss_dssp             SC------CCSSEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ee------cCCCeEEECCCCcc------cCEEEEEEEEeCCcceEecCEEEE
Confidence            21      23568999888665      899999999998776655544444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.36  E-value=1.7e-12  Score=96.40  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=45.8

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCCcEE---EcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~---i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                      +.|.|.+.| .|+|+|+|++.+|..+...........+|.+.   +..+..+      |+|.|+|.|+|.+|.. .+..+
T Consensus       136 v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~------d~G~YtC~a~N~~g~~~~~~~v  209 (226)
T 4f80_A          136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS------SGEGVSCTIRSSLLGLEKTASI  209 (226)
T ss_dssp             EEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----------CEEEEEEETTTTEEEEEEE
T ss_pred             eeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechh------cCcEEEEEEEeCCCCeEEEEEE
Confidence            899999988 59999999876776655433333444556433   3234333      8999999999999987 34344


Q ss_pred             EE
Q psy5697         136 HV  137 (145)
Q Consensus       136 ~v  137 (145)
                      .|
T Consensus       210 ~v  211 (226)
T 4f80_A          210 SI  211 (226)
T ss_dssp             CC
T ss_pred             EE
Confidence            44

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.36  E-value=2.9e-12  Score=101.49  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.........        ......+|.|...+.. ..  +..+.|.|.+.|+|+|+|+|+ +||..+.
T Consensus        72 ~~D~G~Y~C~a~n~~g~~~~~~--------~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~-~~g~~l~  142 (389)
T 2jll_A           72 LSDSGRYDCEAASRIGGHQKSM--------YLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWR-RDKLVLP  142 (389)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEE--------EEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEE-ETTEESS
T ss_pred             hhhCEEEEEEEEeCCCCcceEE--------EEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEE-ECCccCC
Confidence            5677888887765443322111        1122345665554433 12  233899999999999999997 5888876


Q ss_pred             cccC-ceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697          87 YVKD-LRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS  132 (145)
Q Consensus        87 ~~~~-~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s  132 (145)
                      .... ......+   ++|.|.++..+      |+|.|+|.|.|..|...+
T Consensus       143 ~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~  186 (389)
T 2jll_A          143 AKNTTNLKTYSTGRKMILEIAPTSDN------DFGRYNCTATNHIGTRFQ  186 (389)
T ss_dssp             CTTCTTEEEEECSSCEEEEECCCSTT------SSEEEEEEEEETTEEEEE
T ss_pred             cccCceEEEeccCCEEEEEECCCChh------hCEEEEEEEEcCCCcEEE
Confidence            4331 2233333   36999887655      899999999999999743

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.36  E-value=3.3e-12  Score=93.15  Aligned_cols=112  Identities=10%  Similarity=-0.088  Sum_probs=64.3

Q ss_pred             eceee-eecCceeEeeccccC-c--ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEE
Q psy5697           5 HISTL-LADADTYIIADRSLF-P--RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWR   78 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~-p--~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~   78 (145)
                      .|..+ ..|++.|.|...+.. .  .....+.  ..+.   ....+|.+...|......  .+.|.|.+.|. +|.|+|+
T Consensus        61 ~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~--l~V~---~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~  134 (198)
T 1ugn_A           61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLE--LVVT---GAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILC  134 (198)
T ss_dssp             EESSCCGGGCEEEEEEEEETTTEECCCCCCEE--EEEE---CSSCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEE
T ss_pred             EECCCCHHHCeEEEEEEECCCCCcccCCccEE--EEEc---ccccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEE
Confidence            34333 678889999886543 2  1111111  1111   112356666555432223  39999999998 8999998


Q ss_pred             ccCCeEeecccCceEEee----CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          79 FSNNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        79 ~~dg~~i~~~~~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      + ||..+...........    +++|.|.++..+      |+|.|+|.|+|..+.
T Consensus       135 k-~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          135 K-EGEDEHPQCLNSQPHARGSSRAIFSVGPVSPS------RRWWYRCYAYDSNSP  182 (198)
T ss_dssp             E-C------CEEEC------CCEEEEEECCCCTT------SCEEEEEEEECTTST
T ss_pred             E-CCCccCCccccccccCCCcceeEEEecccCcc------cCeEEEEEEEeCCCC
Confidence            5 7766532111111111    368999988765      899999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.4e-12  Score=103.44  Aligned_cols=104  Identities=13%  Similarity=0.007  Sum_probs=67.1

Q ss_pred             eecCc-eeEeeccccCcccCCceeeeEEEeccCCCCCCCEE-EEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeec
Q psy5697          10 LADAD-TYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFR-IKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAY   87 (145)
Q Consensus        10 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~-i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~   87 (145)
                      ..|++ .|.|...+......        .........+|.+ +..+.  .+..+.|.|.+.|+|.|+|+|+ +||..+..
T Consensus       221 ~~D~G~~Y~C~a~n~~g~~~--------~~~~l~V~~~P~i~~~~~~--~g~~v~l~C~~~g~P~p~i~W~-~~g~~l~~  289 (347)
T 2ifg_A          221 SDLNRKNVTCWAENDVGRAE--------VSVQVNVSFPASVQLHTAV--EMHHWCIPFSVDGQPAPSLRWL-FNGSVLNE  289 (347)
T ss_dssp             STTTTCCEEECCEETTEECC--------EEECCCCBEEEEEEECCCE--ESSSEEEEEEEEEESCCEEEEE-ETTEECCC
T ss_pred             hHHCCCeEEEEEEcCCCCEE--------EEEEEEEcCCCeeeeccCc--cCceEEEEEEeeecCCCcEEEE-eCCEECCC
Confidence            45666 66666544322211        1122334456664 33332  1234899999999999999997 58888764


Q ss_pred             ccCceE-Ee--------eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          88 VKDLRI-AL--------SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        88 ~~~~~~-~~--------~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ...... ..        .+|+|.|.++..+      |+|.|+|.|+|.+|..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~G~~  335 (347)
T 2ifg_A          290 TSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQA  335 (347)
T ss_dssp             CSSEEEEECCCCTTCCCEEEEEEESSCCGG------GCEEEEEEEEETTEEE
T ss_pred             CcceeeEEEeecCCCcccceEEEECCCCcc------cCceEEEEEecCCCce
Confidence            332221 11        2567999888655      8999999999999986

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.35  E-value=7.2e-12  Score=92.10  Aligned_cols=117  Identities=10%  Similarity=0.000  Sum_probs=68.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeE-eccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQ-TRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a-~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...... .....+.   +  .......+|.+...+......|  +.|.|.+ .|.|.|.|+|++.+|..+.
T Consensus        81 ~~D~G~Y~C~~~~~~-~~~~~~~---l--~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~  154 (222)
T 4i0k_A           81 VTDEGSYTCFVSIQD-FDSAAVS---L--QVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT  154 (222)
T ss_dssp             GGGCSCEEEEEEECC-CCCCCCC---C--CCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             cccCEEEEEEEEeCC-CceEEEE---E--EEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence            677788888765421 1100000   0  0011123466665554333333  8999999 9999999999865776654


Q ss_pred             cccCce-EEeeCCc---EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVKDLR-IALSNGS---LMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~-~~~~~Gs---L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ...... ....+|.   |.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       155 ~~~~~~~~~~~~~~~~~l~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          155 GNVTTSQMANERGLFDVHSVLRVVLG------ANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEEEECC------TTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCcceeEEcCCCCeEEEEEEEEEEeC------CCCEEEEEEECCCCCCceEEEEEEe
Confidence            321111 2234454   677777655      8999999999999987 44455554

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.35  E-value=2.1e-12  Score=108.97  Aligned_cols=109  Identities=10%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC---CCcc--CeEEEeeEeccCCCEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG---GNRT--RGLELTRQTRYEPSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~---~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+. ...    .      .......+|.+...|..   ....  .+.|.|.+.|+|+|+|+|+ +||..
T Consensus       299 ~~DsG~Y~C~a~N~-~~~----~------~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~-k~g~~  366 (527)
T 3qs9_E          299 RNDTGYYTCSSSKH-PSQ----S------ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT-FSRKS  366 (527)
T ss_dssp             GGGCEEEEEEETTE-EEE----E------EEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEE-ETTEE
T ss_pred             cccCeEEEEEEEeC-CCc----e------EEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEE-ECCEE
Confidence            56777777777554 100    1      11122335655544432   2223  3899999999999999997 58888


Q ss_pred             eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          85 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        85 i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.....  ....+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       367 l~~~~~--~~~~~~~L~I~~v~~~------D~G~YtC~A~N~~g~~~~~~~L~V~  413 (527)
T 3qs9_E          367 FPCEQK--GLDNGYSISKFCNHKH------QPGEYIFHAENDDAQFTKMFTLNIR  413 (527)
T ss_dssp             EECBCC--BCSSSSEEEEECCCTT------CCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             CcCCcc--cccCCcEEEEecCCcc------cCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            865432  2335668999888665      8999999999999987 34455554

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.35  E-value=9.8e-12  Score=82.01  Aligned_cols=83  Identities=16%  Similarity=0.030  Sum_probs=59.0

Q ss_pred             CCCCEEEEcCCC--CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG--GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~--~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.|++.+.+  ....|  +.|.|.+. .|.|.|+|++ ||..+...... .+..+|   +|.|.++..+      |+
T Consensus         5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k-~g~~i~~~~~~-~~~~~~~~~~L~I~~~~~~------D~   75 (100)
T 2yuv_A            5 SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYK-NGQEIRPSTKY-IFEHKGCQRILFINNCQMT------DD   75 (100)
T ss_dssp             SSSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEE-SSCBCCCBTTE-EEEEETTEEEEEEEEECTT------TC
T ss_pred             CCCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEE-CCEECCCCCCE-EEEecCCEEEEEEcCCCcC------cC
Confidence            457899988886  23334  89999999 7999999985 77777654433 333333   5999888765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.|    |.. .+..+.|..
T Consensus        76 G~Y~C~a----g~~~~~~~l~V~~   95 (100)
T 2yuv_A           76 SEYYVTA----GDEKCSTELFVRS   95 (100)
T ss_dssp             CEEEEEE----TTEEEEEEEEECC
T ss_pred             EEEEEEE----CCceEEEEEEEec
Confidence            9999999    554 444555553

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.35  E-value=1.5e-12  Score=89.56  Aligned_cols=75  Identities=20%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeec------ccCceEEe--e--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAY------VKDLRIAL--S--NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~------~~~~~~~~--~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.+.|.|.|.|+|++.++..+..      ..+.....  .  +++|.|.++..+      |+|.|+|.|.|. |.
T Consensus        18 ~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~-g~   90 (124)
T 3rbg_A           18 TLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ------DEGVYKCLHYSD-SV   90 (124)
T ss_dssp             CEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGG------GCEEEEEEEESS-SE
T ss_pred             CEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChH------HCEEEEEEEEcC-CC
Confidence            3999999999999999998655544320      11111221  1  358999988765      899999999999 87


Q ss_pred             e-EEEEEEEEecc
Q psy5697         130 I-LSRFVHVKADS  141 (145)
Q Consensus       130 ~-~s~~v~v~~~~  141 (145)
                      . .+..+.|...+
T Consensus        91 ~~~~~~l~V~~~P  103 (124)
T 3rbg_A           91 STKEVKVIVLATM  103 (124)
T ss_dssp             EEEEEEEEEECC-
T ss_pred             CcEEEEEEEEeCC
Confidence            6 45567776544

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.35  E-value=5.1e-12  Score=100.02  Aligned_cols=88  Identities=13%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             CCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEcc-CCeEeecc----cCceEEe---eCCcEEEcCCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFS-NNTVIAYV----KDLRIAL---SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        46 ~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~-dg~~i~~~----~~~~~~~---~~GsL~i~~~~~~~~~~~~d  115 (145)
                      +|.|+..+......|  +.|.|.+.|+|.|.|+|++. +|..+...    .+...+.   .+++|.|.++..+      |
T Consensus         1 ~P~i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D   74 (389)
T 2jll_A            1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS------D   74 (389)
T ss_dssp             CCEEEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGG------G
T ss_pred             CCeEEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChh------h
Confidence            477776333233334  89999999999999999863 28777531    1122222   2458999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +|.|+|.|+|..|.. .+..+.|..
T Consensus        75 ~G~Y~C~a~n~~g~~~~~~~l~V~~   99 (389)
T 2jll_A           75 SGRYDCEAASRIGGHQKSMYLDIEY   99 (389)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCCcceEEEEEEEe
Confidence            999999999999987 344555553

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.35  E-value=1.1e-11  Score=91.96  Aligned_cols=106  Identities=12%  Similarity=0.029  Sum_probs=68.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCcc--CeEEEeeEecc-CCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT--RGLELTRQTRY-EPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~--g~~L~C~a~G~-P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.....  .+.        .....+|.++..|......  .+.|.|.+.+. |.|+|+|+ +||..+.
T Consensus        63 ~~D~G~Y~C~a~n~~~s~--~~~--------l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~-k~g~~~~  131 (204)
T 3sgj_C           63 VDDSGEYRCQTQLSTLSD--PVQ--------LEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL-QNGKGRK  131 (204)
T ss_dssp             GGGCEEEEEEETTSBCCC--CEE--------EEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEE-ETTEEEE
T ss_pred             ccCCEEEEEEeCCCcccc--cEE--------EEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEE-ECCcEee
Confidence            578888888765421111  111        1112345566665543323  39999999666 56999997 5887753


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .      ...+++|.|.++..+      |+|.|+|.|+|..|...+..+.|.
T Consensus       132 ~------~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~~~~s~~~~l~  171 (204)
T 3sgj_C          132 Y------FHHNSDFYIPKATLK------DSGSYFCRGLVGSKNVSSETVQIT  171 (204)
T ss_dssp             E------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             c------ccCCceEEECcCCcc------cCEEEEEEEEeCCCceecCcEEEE
Confidence            2      234679999988765      899999999997665555544444

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.34  E-value=2.4e-12  Score=93.80  Aligned_cols=116  Identities=14%  Similarity=0.023  Sum_probs=71.8

Q ss_pred             eecCceeEeeccccCc--ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCc--cCeEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFP--RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNR--TRGLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+...  .....+.  ..+   .....+|.+...|.....  ..++|.|.+.| +++.+.|++ ||..+
T Consensus        67 ~~D~G~Y~C~a~n~~g~~~~s~~~~--l~V---~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  139 (196)
T 3p2t_A           67 EDYAGRYRCYYRSPVGWSQPSDPLE--LVM---TGAYSKPTLSALPSPLVTSGKSVTLLCQSRS-PMDTFLLCK-ERAAH  139 (196)
T ss_dssp             GGGCEEEEEEEEETTEEBCCCCCEE--EEE---ECSSCCCEEEEESCSEECTTCCEEEEEEEEE-EEEEEEEEE-TTCCC
T ss_pred             cccCceEEEEEeCCCcccCCCccEE--EEe---cCCCCCCEEEeCCcceecCCCeEEEEEecCC-CCCEEEEEe-CCCcc
Confidence            5788888888755432  1111111  011   112346777766664323  33999999999 567999985 77655


Q ss_pred             ecccCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC----ceEEEEEEEE
Q psy5697          86 AYVKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG----VILSRFVHVK  138 (145)
Q Consensus        86 ~~~~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G----~~~s~~v~v~  138 (145)
                      .......   ....+++|.|.++..+      |+|.|+|.|+|.++    +..|..+.|.
T Consensus       140 ~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~~s~~S~~~~l~  193 (196)
T 3p2t_A          140 PLLCLRSEHGAQQHQAEFPMSPVTSV------HGGTYRCFSSHGFSHYLLSHPSDPLELI  193 (196)
T ss_dssp             GGGSEEEEEEEEEEEEEEEECSCCGG------GCEEEEEEEECGGGTTEECCCCCCEEEE
T ss_pred             cceeecccccccCcceEEEeCCCccc------CCCeEEEEEEcCCCCcccCCCCCCEEEE
Confidence            3221111   1234678999988765      89999999999998    3445545544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.34  E-value=1.1e-12  Score=101.14  Aligned_cols=113  Identities=13%  Similarity=0.056  Sum_probs=67.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC--CC--ccCeEEEeeEeccCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG--GN--RTRGLELTRQTRYEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~--~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+-.-...  ..    .........+|.+...+.+  ..  +..+.|.|.+.|+|+| .|+|++ ++..
T Consensus       181 ~~d~g~Y~C~a~n~~~~~~--~~----~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k-~~~~  253 (308)
T 4fom_A          181 FARGRRITCVVKHPALEKD--IR----YSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSR-LDGQ  253 (308)
T ss_dssp             GGTTCEEEEEEECTTCSSC--EE----EEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCB-SSSC
T ss_pred             ecCCccEEEEEEccCCCCc--eE----EeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEE-CCeE
Confidence            3566677776644211110  11    1112334556766555544  11  2338999999999999 699975 5555


Q ss_pred             eecccCceEEeeCCc-EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          85 IAYVKDLRIALSNGS-LMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        85 i~~~~~~~~~~~~Gs-L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +...    ....+++ |.|.++..+      |+|.|+|.|+|.+|+. .+..+.|..
T Consensus       254 ~~~~----~~~~~~~~l~i~~v~~~------d~G~Y~C~A~N~~G~~~~~~~l~V~~  300 (308)
T 4fom_A          254 WPDG----LLASDNTLHFVHPLTFN------YSGVYICKVTNSLGQRSDQKVIYISD  300 (308)
T ss_dssp             CCSS----CBCSTTEEECCSCCCSC------CCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred             CCCc----EEEcCCeEEEECCCChh------hCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence            5321    2233454 445556544      8999999999999987 444555553

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.34  E-value=2.2e-12  Score=92.54  Aligned_cols=82  Identities=16%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             CCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC-cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          45 HYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        45 ~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+|.|+..|.+ ..  +..+.|.|.+.|+|.|.|+|++ +|..+...........+| +|.|.++..+      |+|.|+
T Consensus         6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~   78 (192)
T 2iep_A            6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDS------DDGIYC   78 (192)
T ss_dssp             EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCTTCTTEEEEGGGTEEEESSCCGG------GCEEEE
T ss_pred             CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEE-CCEEccccCccEEEcCCccEEEEcCCCcc------cCeEEE
Confidence            45666655554 12  2338999999999999999985 777776433333333444 6999887655      899999


Q ss_pred             EEEEcCCCceEEE
Q psy5697         121 CRASNEAGVILSR  133 (145)
Q Consensus       121 C~A~N~~G~~~s~  133 (145)
                      |.|.|..|...+.
T Consensus        79 C~~~~~~~~~~~~   91 (192)
T 2iep_A           79 CTANNGVGGAVES   91 (192)
T ss_dssp             EEEECSSSCCEEE
T ss_pred             EEEEcCCCceeEe
Confidence            9999999985433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.33  E-value=9.3e-12  Score=89.32  Aligned_cols=87  Identities=13%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEccCCeEeecccCceEEe----eCCcEEEcCCCCCCCCCCCCCe
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIAL----SNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~----~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      ++.|...|++ ..  +..+.|.|.+.|.| .|.|+|++.||..+..........    .+++|.|.++..+      |+|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G   75 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAG   75 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGG------GCE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcc------cCE
Confidence            4456666665 22  33399999999988 899999865888776333222222    2358999888655      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|+|.|.|..|...+..+.|.
T Consensus        76 ~Y~C~~~~~~~~~~~~~~~l~   96 (191)
T 1epf_A           76 IYKCVVTAEDGTQSEATVNVK   96 (191)
T ss_dssp             EEEEEEEETTTEEEEEEEEEE
T ss_pred             EEEEEEEcCCCcceEEEEEEE
Confidence            999999999976555555554

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=6.9e-12  Score=84.13  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=57.6

Q ss_pred             CCCCEEEEcCCC----CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG----GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDV  114 (145)
Q Consensus        44 ~~~P~~i~~p~~----~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~  114 (145)
                      ..+|.++..|.+    ..  +..+.|.|.+. .|.|.|+|++ ||..+...... ....+|   +|.|.++..+      
T Consensus         8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k-~g~~~~~~~~~-~~~~~~~~~~L~I~~v~~~------   78 (113)
T 2cpc_A            8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTK-DGEEVVESPAL-LLQKEDTVRRLVLPAVQLE------   78 (113)
T ss_dssp             CSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEE-TTEECCCBTTB-EEEECSSEEEEEESSCCTT------
T ss_pred             ccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEE-CCEECccCCCE-EEEECCCEEEEEECCCCcc------
Confidence            445656666654    12  22389999995 8999999985 88887654433 333333   7999888765      


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697         115 HSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      |+|.|+|.|.|   ...+..+.|..
T Consensus        79 D~G~Y~C~a~n---~~~~~~l~V~~  100 (113)
T 2cpc_A           79 DSGEYLCEIDD---ESASFTVTVTE  100 (113)
T ss_dssp             TCEEEEEESSS---CEEEEEEEEEC
T ss_pred             cCEEEEEEEec---CcEEEEEEEec
Confidence            89999999999   23444566653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.33  E-value=2.9e-12  Score=94.03  Aligned_cols=90  Identities=14%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             CCCCCEEEEcC----CC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCC
Q psy5697          43 NEHYPFRIKSA----PG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRP  112 (145)
Q Consensus        43 ~~~~P~~i~~p----~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~  112 (145)
                      ...+|+|+..+    .. ..  +..+.|.|.+.|.|.|.|+|++ +|..+......   .....+++|.|.++..+    
T Consensus        12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~----   86 (231)
T 3ojm_B           12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPS----   86 (231)
T ss_dssp             -CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEE-TTEECCGGGSTTCCEEEGGGTEEEECSCCGG----
T ss_pred             CccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEE-CCccccccccccceeeecCcceEEEecCCcc----
Confidence            34567777666    33 22  2339999999999999999985 78877643322   23445568999988655    


Q ss_pred             CCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         113 DVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                        |+|.|+|.|+|..|.. .+..+.|..
T Consensus        87 --d~G~Y~C~~~n~~~~~~~~~~l~V~~  112 (231)
T 3ojm_B           87 --DKGNYTCVVENEYGSINHTYHLDVVE  112 (231)
T ss_dssp             --GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             --cCEEEEEEEecccCcccccEEEEEEc
Confidence              8999999999999987 344555553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.33  E-value=8.2e-12  Score=92.33  Aligned_cols=116  Identities=12%  Similarity=0.014  Sum_probs=66.1

Q ss_pred             eecCceeEeeccccCcccCCc-eeeeEEEeccCCCCCCCEEEEcCCC--CCccC--eEEEeeEeccCC--CEEEEEccCC
Q psy5697          10 LADADTYIIADRSLFPRPLGY-LVGNIVYSSRSENEHYPFRIKSAPG--GNRTR--GLELTRQTRYEP--SQLGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~P~~i~~p~~--~~~~g--~~L~C~a~G~P~--P~i~W~~~dg   82 (145)
                      ..|++.|.|...+......+. +.   +..   ....+|.+...|+.  ....|  +.|.|.+.|.|.  +.|+|++ +|
T Consensus        73 ~~D~G~Y~C~a~n~~~~~~s~~~~---l~v---~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~-~g  145 (213)
T 2x1w_L           73 ISYAGMVFCEAKINDESYQSIMYI---VVV---VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PS  145 (213)
T ss_dssp             TTTCSEEEEEEC----CEECCCEE---EEE---CBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC-SC
T ss_pred             hhcCceEEEEEEECCeeEEEEEEE---EEE---eCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe-cC
Confidence            578889988875522111110 11   111   11234544444443  22333  999999999664  5899975 55


Q ss_pred             eEeecccC-c-eE--------EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          83 TVIAYVKD-L-RI--------ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        83 ~~i~~~~~-~-~~--------~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ..+..... . ..        ....++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          146 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             SSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGG------GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CccceEEEeccccccccCccceeeeEEEEECCCCcc------cCEEEEEEEecCCCcEEEEEEEEEe
Confidence            54321100 0 00        112347999988765      8999999999999987 34455554

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.33  E-value=8.4e-12  Score=91.44  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             CCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEE----EcCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLM----FPPFPETGFRPD  113 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~----i~~~~~~~~~~~  113 (145)
                      ...+|.|+..|.+ ..  +..+.|.|.+.|+|.|.|+|++ ||..+....  ..+....+|++.    |.++..      
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~------   78 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE------   78 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEE-TTEECCCSSSSSSEEECTTSCEEESSCCBSSSC------
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEE-CCcCccCCCccceeEEecCCceEEEEEeccCCc------
Confidence            4568999999887 22  3339999999999999999985 788776432  234556677665    333433      


Q ss_pred             CCCeEEEEEEEcCCCceEEE
Q psy5697         114 VHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~~s~  133 (145)
                      .|+|.|+|.|.|..|...+.
T Consensus        79 ~d~G~Y~C~~~n~~g~~~~~   98 (217)
T 2vr9_A           79 QDGGEYWCVAKNRVGQAVSR   98 (217)
T ss_dssp             BCCEEEEEEEEETTEEEECC
T ss_pred             ccCceEEEEEecCCCccccc
Confidence            38999999999999987544

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.6e-12  Score=87.11  Aligned_cols=85  Identities=13%  Similarity=0.040  Sum_probs=58.9

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee-C--CcEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS-N--GSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~-~--GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ++.|+..|.+ ....|  +.|.|.+.|.|.|.|+|++ ||..+........... +  .+|.|.++..+      |+|.|
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y   85 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGGYHVLTLRQLALK------DSGTI   85 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEE-SSCEECCSSSCCBCCBTTTBCCBEECSCCTT------TCEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEE-CCEECCCCCcEEEEEcCCCEEEEEEcCCChh------hCEEE
Confidence            4578888876 23333  8999999999999999985 8887765433222212 2  27999988765      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEEecc
Q psy5697         120 RCRASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      +|.+    |.. .+..+.|...+
T Consensus        86 ~C~~----g~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           86 YFEA----GDQRASAALRVTEKP  104 (115)
T ss_dssp             EEEE----TTEECCEEEEEECCS
T ss_pred             EEEE----CCeeEEEEEEEECCC
Confidence            9994    544 34566666433

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=88.53  Aligned_cols=78  Identities=14%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +|.|+..|.+ ..  +..+.|.|.+.|.|.|.++|++ ++..+.... .......+++|.|.++..+      |+|.|+|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C   74 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKS------DEGIYRC   74 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC------CBCCCTTEEECTTSCEEETTCCGG------GCEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEE-CCccceeccCCeEEEecCCCEEEeeCCHh------HCcEEEE
Confidence            5778888877 22  2339999999999999999985 666654322 2335566789999988765      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|.|..+..
T Consensus        75 ~~~~~~~~~   83 (189)
T 2v5t_A           75 EGRVEARGE   83 (189)
T ss_dssp             EEEETTTTE
T ss_pred             EEEEcCCCc
Confidence            999998654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.33  E-value=3e-12  Score=99.31  Aligned_cols=109  Identities=16%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             ecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC--CCcc--CeEEEeeEeccCCCE-EEEEccCCeEe
Q psy5697          11 ADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG--GNRT--RGLELTRQTRYEPSQ-LGWRFSNNTVI   85 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~--~~~~--g~~L~C~a~G~P~P~-i~W~~~dg~~i   85 (145)
                      .|++.|.|...+.....        ..........+|.+...+..  ....  .+.|.|.+.|+|.|. |+|++ +|..+
T Consensus       204 ~d~G~Y~C~a~n~~~~~--------~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~-~~~~~  274 (331)
T 3u83_A          204 AHQQSLACIVNYHMDRF--------KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTT-LNGSL  274 (331)
T ss_dssp             GTTCEEEEEEEETTEEE--------EEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEE-TTBSC
T ss_pred             cCCCEEEEEEecCCCcc--------eeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEE-CCCcc
Confidence            56677777765432221        11112333456665544433  2233  399999999999998 99985 66665


Q ss_pred             ecccCceEEeeCCcEEEc-CCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          86 AYVKDLRIALSNGSLMFP-PFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~-~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ...    ....+++|.|. ++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       275 ~~~----~~~~~~~L~i~~~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          275 PKG----VEAQNRTLFFKGPINYS------LAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             CTT----EEEETTEEEECSCCCGG------GCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             ccc----ceecCcEEEEeCCCccc------cCeEEEEEEEeccccceEEEEEEEe
Confidence            321    33467899998 77655      8999999999999997 33344444

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.33  E-value=5.4e-12  Score=96.80  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=55.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                      .+.|.|.+.|.|.|.|+|++ +|..+..........  ..++|.|.+ +..+      |+|.|+|.|+|.+|.. .+..+
T Consensus       121 ~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~------d~G~Y~C~a~N~~G~~~~~~~l  193 (305)
T 2nzi_A          121 VVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTRSFTSLVFPNGVERK------DAGFYVVCAKNRFGIDQKTVEL  193 (305)
T ss_dssp             CEEEEEEEEEESCCEEEEEE-SSSBCCSSSSCEEEECSSEEEEEETTCCCST------TCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEECCCCCCEEEEEE-CCEECCCCCcEEEEEcCCceEEEEecCCccC------ccEEEEEEEEeCCCceeeEEEE
Confidence            38999999999999999985 777765433332222  234799987 7654      8999999999999997 44456


Q ss_pred             EEEecc
Q psy5697         136 HVKADS  141 (145)
Q Consensus       136 ~v~~~~  141 (145)
                      .|...+
T Consensus       194 ~v~~~P  199 (305)
T 2nzi_A          194 DVADVP  199 (305)
T ss_dssp             EEEBCC
T ss_pred             EEecCC
Confidence            665433

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.33  E-value=1.8e-12  Score=92.63  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee----CCcEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      +|.|+..|++ ..  +..+.|.|.+.|.|.|.|+|++ ||..+...........    +++|.|.++..+      |+|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~   74 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGR   74 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEE-TTEECCSSEEEEEEEETTEEEEEEEESSCCGG------GCEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEE-CCeecCCCCceEEEecCCCceEEEEEeecCcc------cCeE
Confidence            4566666665 22  2339999999999999999985 7877754322222222    258999888655      8999


Q ss_pred             EEEEEEcCCCceEEE--EEEEE
Q psy5697         119 YRCRASNEAGVILSR--FVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~~s~--~v~v~  138 (145)
                      |+|.|.|..|...+.  .+.|.
T Consensus        75 Y~C~~~~~~~~~~~~~~~l~V~   96 (182)
T 1rhf_A           75 YWCQVEDGGETEISQPVWLTVE   96 (182)
T ss_dssp             EEEEESSCTTCEECCCEEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEEe
Confidence            999999998876544  44443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.32  E-value=9e-12  Score=81.58  Aligned_cols=69  Identities=10%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .|.|++.|.+ ..  +..+.|.|.+ |.|.|.|+|+ +||..+........ ..+|   +|.|.++..+      |+|.|
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~-k~~~~l~~~~~~~~-~~~~~~~~L~I~~v~~~------D~G~Y   78 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQ-RGGSDISASNKYGL-ATEGTRHTLTVREVGPA------DQGSY   78 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEE-CSSSEECSSTTCEE-EEETTEEEEEESSCCTT------CCSEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEE-ECCEECCCCCcEEE-EEcCCEEEEEEcCCCcc------cCEEE
Confidence            3566666665 22  2339999999 8999999998 47887765443333 3333   6999888765      89999


Q ss_pred             EEEE
Q psy5697         120 RCRA  123 (145)
Q Consensus       120 ~C~A  123 (145)
                      +|.|
T Consensus        79 ~C~a   82 (95)
T 2k1m_A           79 AVIA   82 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.32  E-value=6e-12  Score=91.27  Aligned_cols=56  Identities=7%  Similarity=-0.005  Sum_probs=43.0

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s  132 (145)
                      +.|.|.+.|.|+|+|+|++ ||+++.....         +.|..+..+      |+|.|+|.|+|.+|...+
T Consensus       113 v~L~C~~~g~p~p~i~W~~-~g~~l~~~~~---------~~i~~~~~~------d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          113 ATLTCEVLEGTDVELKLYQ-GKEHLRSLRQ---------KTMSYQWTN------LRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             TEEEEECSSCSSCEEEEEE-TTEEEEEESS---------SEEEEECSC------CSSCEEEEEEETTEEEEE
T ss_pred             EEEEEEecCCCCcEEEEEE-CCEECCCCCc---------EEEEEEEcc------CCeEEEEEEEecCCCcee
Confidence            8999999999999999985 8887754322         223333333      899999999999998744

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=99.05  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CCCEEEEcCCCCCccC--eEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          45 HYPFRIKSAPGGNRTR--GLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+|.|+.........|  +.|.|.+.|.|+| .|+|++ ||..+............++|.|.++..+      |+|.|+|
T Consensus       221 ~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~-~g~~~~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C  293 (312)
T 2y23_A          221 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKK------DAGIYEV  293 (312)
T ss_dssp             HSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEE-TTEEEEEECCC----CEEEEEECSCSGG------GCEEEEE
T ss_pred             cCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEee-CCEECCCCCcEEEECCEEEEEECcCCHH------HCEEEEE
Confidence            3466664433222233  8999999999998 999985 8888764332222222248999888765      8999999


Q ss_pred             EEEcCCCceE
Q psy5697         122 RASNEAGVIL  131 (145)
Q Consensus       122 ~A~N~~G~~~  131 (145)
                      .|+|.+|...
T Consensus       294 ~a~N~~G~~~  303 (312)
T 2y23_A          294 ILKDDRGKDK  303 (312)
T ss_dssp             EEESTTCCEE
T ss_pred             EEEcCCCcee
Confidence            9999999983

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.32  E-value=2.2e-11  Score=87.51  Aligned_cols=68  Identities=9%  Similarity=-0.015  Sum_probs=53.9

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .+.|.|.+.|.|.|+|+|++ +|..+        ...+++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|.
T Consensus       114 ~~~l~C~~~~~p~~~v~W~~-~~~~~--------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          114 SLTLTLESPPGSSPSVQCRS-PRGKN--------IQGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             CEEEEEECCTTCCCEEEEEC-TTSCE--------EEESSEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcCCCCCCEEEEEe-CCCcc--------ccCceEEEEecCCcC------CCeEEEEEEEECCceEEEEEEEEEE
Confidence            38999999999999999985 55432        235789999988765      8999999999999987 55577776


Q ss_pred             eccC
Q psy5697         139 ADSR  142 (145)
Q Consensus       139 ~~~~  142 (145)
                      ..++
T Consensus       179 ~~p~  182 (184)
T 2ny1_B          179 AFQK  182 (184)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            5544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.32  E-value=3.7e-12  Score=85.64  Aligned_cols=77  Identities=14%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CCCCCCCEEEEcCCC--CCccC--eEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCC---cEEEcCCCCCCCCC
Q psy5697          41 SENEHYPFRIKSAPG--GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNG---SLMFPPFPETGFRP  112 (145)
Q Consensus        41 ~~~~~~P~~i~~p~~--~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~G---sL~i~~~~~~~~~~  112 (145)
                      .....+|.|++.+++  ....|  +.|.|.+ +.|.|.|+|++ ||..+... ... .+..+|   +|.|.++..+    
T Consensus        10 ~~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k-~g~~l~~~~~~~-~~~~~~~~~~L~I~~v~~~----   82 (104)
T 1pd6_A           10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLK-NGQEIQMSGSKY-IFESIGAKRTLTISQCSLA----   82 (104)
T ss_dssp             -CCSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEE-SSSEECCCSSSS-EEEEETTEEEEEECSCSSS----
T ss_pred             CCccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEE-CCEECCCCCCeE-EEEecCCEEEEEECCCCcc----
Confidence            445667888887776  23333  9999999 89999999985 88887654 333 334455   8999888765    


Q ss_pred             CCCCeEEEEEEEcC
Q psy5697         113 DVHSTVYRCRASNE  126 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~  126 (145)
                        |+|.|+|.|.|.
T Consensus        83 --D~G~Y~C~a~~~   94 (104)
T 1pd6_A           83 --DDAAYQCVVGGE   94 (104)
T ss_dssp             --SCEEEEEEETTE
T ss_pred             --cCEEEEEEECCC
Confidence              899999999553

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.32  E-value=1.2e-11  Score=89.87  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             CCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc----CceEEeeCCcEEEcCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK----DLRIALSNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~----~~~~~~~~GsL~i~~~~~~~~~~~~d  115 (145)
                      ...+|.|+..|.+ ..  +..+.|.|.+.|+|.|.|+|++ +|..+....    ..+....+|.+.+..+..... ...|
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d   83 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPD   83 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEE-TTEECCCTTTCTTCSEEECTTSCEEESSCCCCSS-CCCS
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEE-CCEEeeccccccccceEEecCCcEEEEEEEecCC-Cccc
Confidence            3457888888877 22  3339999999999999999985 777765322    124556778887766532221 2238


Q ss_pred             CeEEEEEEEcCCCceEEEEE
Q psy5697         116 STVYRCRASNEAGVILSRFV  135 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~~v  135 (145)
                      +|.|+|.|.|..|...+..+
T Consensus        84 ~G~Y~C~~~n~~g~~~~~~~  103 (212)
T 2v9r_A           84 EGVYVCVARNYLGEAVSHDA  103 (212)
T ss_dssp             CEEEEEEEEETTEEEECCCE
T ss_pred             CeEEEEEEECCCCceeecce
Confidence            99999999999998754433

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.31  E-value=3.6e-12  Score=95.67  Aligned_cols=124  Identities=13%  Similarity=0.027  Sum_probs=74.9

Q ss_pred             eeceee-eecCceeEeeccccCc--ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLFP--RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWR   78 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~   78 (145)
                      |.|..+ ..|++.|.|...+..-  .....+.  ..+   .....+|.+...|...+..  .++|.|.+.+.|.|++.|+
T Consensus        66 L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~--l~V---~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~  140 (218)
T 1uct_A           66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE--LVV---TGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA  140 (218)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCCEE--EEE---ECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEE
T ss_pred             EEEcccccccCEEEEEEEEcCCCceeecCCEE--EEE---cCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEE
Confidence            344444 6788888888755321  1111111  011   1112467777666443333  3999998888899999998


Q ss_pred             ccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC----ceEEEEEEEEecc
Q psy5697          79 FSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG----VILSRFVHVKADS  141 (145)
Q Consensus        79 ~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G----~~~s~~v~v~~~~  141 (145)
                      | ||..+..  .......+++|.|.++..+      |+|.|+|.|+|..+    +..|..+.|....
T Consensus       141 k-~g~~~~~--~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          141 K-EGELSLP--QHQSGEHPANFSLGPVDLN------VSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             E-TTCSSCC--SEEECSSSEEEECCSCCGG------GCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             E-CCCcccc--cccCCCccCEEEEccCCcc------cCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            4 7766532  1122234668999988765      89999999999743    2345555555433

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.31  E-value=2.4e-12  Score=93.18  Aligned_cols=73  Identities=23%  Similarity=0.395  Sum_probs=54.4

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeecccCc-------e--EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDL-------R--IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~-------~--~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.+ .|+|.|.|+|++ +|..+......       +  ....+++|.|.++..+      |+|.|+|.|+|.+|.
T Consensus       124 ~~~l~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~g~  196 (209)
T 1nbq_A          124 RAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS------DTGEYSCEARNGYGT  196 (209)
T ss_dssp             CEEECCCCCSCBSCCEEEEEE-TTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGG------GCCCEEEEEECSSSC
T ss_pred             EEEEEEeCCCCCCCceeEEEE-CCeeCCCccccceeeeccceEEcCCcceEEEEecccc------CCeEEEEEEeCCcCc
Confidence            38999997 999999999985 77766532211       1  1124568999887655      899999999999999


Q ss_pred             e-EEEEEEEEe
Q psy5697         130 I-LSRFVHVKA  139 (145)
Q Consensus       130 ~-~s~~v~v~~  139 (145)
                      . .+..++|..
T Consensus       197 ~~~s~~v~l~V  207 (209)
T 1nbq_A          197 PMTSNAVRMEA  207 (209)
T ss_dssp             CEECCCBCCEE
T ss_pred             ccccccEEEEE
Confidence            8 666655543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=6.6e-12  Score=83.03  Aligned_cols=87  Identities=11%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             CCCCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~  116 (145)
                      .+.+|.|+..|.+ ....|  +.|.|. .|.|.|.|+|++ ||..+...... .+..+|   +|.|.++..+      |+
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k-~~~~l~~~~~~-~~~~~~~~~~L~I~~v~~~------D~   75 (103)
T 2dku_A            5 SSGANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRK-GLLELRASGKH-QPSQEGLTLRLTISALEKA------DS   75 (103)
T ss_dssp             SCCCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEE-SSCBCCSSSSE-EEEEETTEEEEEEESCCTT------TC
T ss_pred             CCCCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEe-CCEECCCCCeE-EEEeCCCEEEEEECCCCcc------cC
Confidence            3456777777776 23333  899999 599999999974 77777644333 333455   8999988765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEeccC
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~~~~  142 (145)
                      |.|+|.    +|.. .+..+.|...+.
T Consensus        76 G~Y~C~----~g~~~~~~~l~V~~~p~   98 (103)
T 2dku_A           76 DTYTCD----IGQAQSRAQLLVQGRRS   98 (103)
T ss_dssp             SEEEEE----CSSCBCCEEEEEECSCC
T ss_pred             EEEEEE----eCCceEEEEEEEeCccC
Confidence            999998    6665 455677765443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.31  E-value=1.4e-11  Score=93.73  Aligned_cols=87  Identities=13%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEccCCeEeecccCceEEe----eCCcEEEcCCCCCCCCCCCCCe
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIAL----SNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~----~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      +|.+...|++ ..  +..+.|.|.+.|.| .|.|+|++.||..+..........    .+++|.|.++..+      |+|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G   75 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAG   75 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGG------GCE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCC------CCE
Confidence            4566777776 22  33499999999998 699999876887775432222222    2348999888655      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|+|.|.|..|...+..+.|.
T Consensus        76 ~Y~C~~~n~~g~~~~~~~~l~   96 (291)
T 1qz1_A           76 IYKCVVTAEDGTQSEATVNVK   96 (291)
T ss_dssp             EEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEEEcCCCCeeEEEEEEE
Confidence            999999999987666655554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.31  E-value=1.7e-12  Score=102.84  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             CCCCCEEEEcCCC-CC--ccCeEEEeeEec-cCCCEEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          43 NEHYPFRIKSAPG-GN--RTRGLELTRQTR-YEPSQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~--~~g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      ...+|.|...|.+ ..  +..+.|.|.+.| .|.|+|+|++ ||..+.... .......+|+|.|.++..+      |+|
T Consensus         3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G   75 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEG   75 (395)
T ss_dssp             --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEE-SSSBCCTTTTTEEECTTSCCEEESSCCGG------GCE
T ss_pred             cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEE-CCcCcccccceEEEecCCceEEEecCCCC------CCc
Confidence            3567888888876 22  233999999999 9999999985 787776433 2234456789999988655      899


Q ss_pred             EEEEEEEcCCCceEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFV  135 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v  135 (145)
                      .|+|.|.|..|...++.+
T Consensus        76 ~Y~C~a~n~~g~~~s~~~   93 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVI   93 (395)
T ss_dssp             EEEEEEEETTEEEECCCE
T ss_pred             EEEEEEEeCCCeEEeEEE
Confidence            999999999998765433

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.31  E-value=2.3e-11  Score=86.02  Aligned_cols=106  Identities=9%  Similarity=0.029  Sum_probs=68.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeE-eccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQ-TRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a-~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+.....  .+.   +     ....+|.++..|....  +..+.|.|.+ .|.|.|.|+|++ ||..+.
T Consensus        60 ~~d~G~Y~C~~~~~~~s~--~~~---l-----~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~~~  128 (170)
T 3ry4_A           60 NNDSGEYTCQTGQTSLSD--PVH---L-----TVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQK  128 (170)
T ss_dssp             GGGCEEEEEEETTSBCCC--CEE---E-----EEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEE-TTEEEE
T ss_pred             cccCeEEEEEEeCCCceE--eEE---E-----EEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEE-CCeEcc
Confidence            567778888775421111  111   0     1112344555544322  2338999999 566779999985 877754


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .      ...+++|.|.++..+      |+|.|+|.|.|..|...|..+.|.
T Consensus       129 ~------~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s~~~~l~  168 (170)
T 3ry4_A          129 F------SHLDPTFSIPQANHS------HSGDYHCTGNIGYTLFSSKPVTIT  168 (170)
T ss_dssp             E------ESSCCEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             c------cCCCCeEEEEecccc------CCEEEEEEEEeCcCccccccEEEE
Confidence            2      224668999887655      899999999999998766666554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=88.67  Aligned_cols=63  Identities=8%  Similarity=0.075  Sum_probs=45.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.+.|.+.|.|+|+|+|++ +|..+.......   .....++|.|.++...      |.|.|+|.|+|++|..
T Consensus       136 ~~~~c~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~YtC~a~N~~g~~  201 (218)
T 4frw_A          136 LAASCTAEGSPAPSVTWDT-EVKGTTSSRSFKHSRSAAVTSEFHLVPSRSM------NGQPLTCVVSHPGLLQ  201 (218)
T ss_dssp             EEEEEEEEEBSCCEEEEEE-SSCCEEEEEEEECSSSEEEEEEEEECCCGGG------TTCEEEEEEECTTCSS
T ss_pred             cceeeeccCCcCceEEEEE-CCcccccCceEecCCcEEEEEEEEEeeCCHH------hCeEEEEEEEeCCCCe
Confidence            8999999999999999985 665554321100   0111236888876544      8999999999999986

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.30  E-value=1.3e-11  Score=90.50  Aligned_cols=72  Identities=8%  Similarity=0.071  Sum_probs=46.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                      +.|.|.+.|+|.|.|+|++.+|..+...... .....+|.+.+.   .+..+      |.|.|+|.|+|.+|.. .+..+
T Consensus       134 v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~------d~g~Y~C~a~n~~g~~~~~~~l  207 (222)
T 3sbw_C          134 HELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT------TNEIFYCTFRRLDPEENHTAEL  207 (222)
T ss_dssp             EEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECC------TTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEecc------CCcEEEEEEEeCccceeeEEEE
Confidence            8999999999999999986557766432211 111234433332   22222      7999999999999987 44455


Q ss_pred             EEE
Q psy5697         136 HVK  138 (145)
Q Consensus       136 ~v~  138 (145)
                      .|.
T Consensus       208 ~v~  210 (222)
T 3sbw_C          208 VIP  210 (222)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            555

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.30  E-value=3.4e-11  Score=101.89  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             eecCceeEeeccccCcccCC-ceeeeEEEeccCCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLG-YLVGNIVYSSRSENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+......+ .+.-. |.      ..|+.++..|.+ ....  .+.|.|.+.|+|+|+|+|+ +||..+
T Consensus       529 ~~d~G~Y~C~a~n~~g~~~s~~~~l~-V~------~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~-~~g~~i  600 (642)
T 1e07_A          529 RNDARAYVCGIQNSVSANRSDPVTLD-VL------YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWR-INGIPQ  600 (642)
T ss_pred             hhcCceEEEEeEcCCCCccCCCEEEE-EE------eCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEE-ECCEEC
Confidence            45677777776554332211 11100 11      123344555554 2222  3899999999999999997 588775


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      .         .+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|+.
T Consensus       601 ~---------~~~~L~i~~~~~~------d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          601 Q---------HTQVLFIAKITPN------NNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             c---------cCceEEECccccc------CCeEEEEEEEecccCcceeEEEEEEE
Confidence            3         2457999877655      8999999999999998 566676653

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.29  E-value=3.6e-11  Score=87.34  Aligned_cols=110  Identities=9%  Similarity=0.005  Sum_probs=61.7

Q ss_pred             eecCceeEeeccccCcccCCc---eeeeEEEeccCCCCCCCEEEEcCCCCCccCeEEEeeEe-ccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGY---LVGNIVYSSRSENEHYPFRIKSAPGGNRTRGLELTRQT-RYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g~~L~C~a~-G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+........   ..-...+.   .....|.+...... .+..+.|.|.+. |+|.|+|+|++ ||..+
T Consensus        74 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~---~~~~~p~~~~~~~~-~g~~~~l~C~~~~g~P~p~i~W~k-~g~~l  148 (201)
T 1dr9_A           74 PSDEGTYECVVLKYEKDAFKREHLAEVTLSVK---ADFPTPSISDFEIP-TSNIRRIICSTSGGFPEPHLSWLE-NGEEL  148 (201)
T ss_dssp             GGGCEEEEEEEEECCTTSCEEEEEEEEEEEEE---CCCCCCEEEEEECS-STTEEEEEEEEEEESSCEEEEEEE-SSCEE
T ss_pred             chhCeEEEEEEEcCCCCccccccccEEEEEEc---CCCCCCceEeccCC-CCCeEEEEEecCCccCCCEEEEEE-CCEEC
Confidence            678888988876643322110   01010111   11123544332111 122379999995 99999999985 78887


Q ss_pred             ecccCceEEeeC-CcEEE---cCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          86 AYVKDLRIALSN-GSLMF---PPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        86 ~~~~~~~~~~~~-GsL~i---~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ...........+ |.+.+   ..+..+      |+|.|+|.|+|..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          149 NAINTTVSQDPETELYAVSSKLDFNMT------TNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             CCSEEEEEECTTTCCEEEEEEEEEETT------SCEEEEEEEEETTCCE
T ss_pred             ccccceEEecCCCcEEEEEEEEEEEec------CCCEEEEEEecCccee
Confidence            643222222233 33222   222222      8999999999999986

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.29  E-value=8.5e-12  Score=103.20  Aligned_cols=114  Identities=12%  Similarity=-0.000  Sum_probs=73.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC----CC--ccCeEEEeeEeccCCCE-EEEEccCC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG----GN--RTRGLELTRQTRYEPSQ-LGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~----~~--~~g~~L~C~a~G~P~P~-i~W~~~dg   82 (145)
                      ..|++.|.|...+.......        ........+|.+...|..    ..  +..+.|.|.+.|+|.|. |+|+ +||
T Consensus       282 ~~D~G~Y~C~a~n~~g~~~~--------~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~-k~g  352 (524)
T 2ec8_A          282 VNDSGVFMCYANNTFGSANV--------TTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI-YMN  352 (524)
T ss_dssp             TTTCEEEEEEEECSSCEEEE--------EEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEE-SSS
T ss_pred             HHHCEEEEEEEEecCCceEE--------EEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEE-ECC
Confidence            46777888877554333211        111222356766665542    12  23399999999999999 9998 477


Q ss_pred             eEeecccCceEEeeC-------CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          83 TVIAYVKDLRIALSN-------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~-------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ..+...........+       ++|.|.++..+      |+|.|+|.|+|..|.. .+..+.|.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~  410 (524)
T 2ec8_A          353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGT------EGGTYTFLVSNSDVNAAIAFNVYVN  410 (524)
T ss_dssp             CBCSSSBCCEESCCSSSCCEEEEEEEECSCCGG------GCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eeccCCccceeEEccCCCceeEEEEEEeecCcc------cCeEEEEEEEecCceEEEEEEEEEe
Confidence            777644322222222       37999887655      8999999999999996 34455554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.29  E-value=9.8e-12  Score=89.64  Aligned_cols=84  Identities=15%  Similarity=0.001  Sum_probs=59.5

Q ss_pred             CCCEEEEcCCCCC---ccCeEEEeeEeccCC--CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          45 HYPFRIKSAPGGN---RTRGLELTRQTRYEP--SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        45 ~~P~~i~~p~~~~---~~g~~L~C~a~G~P~--P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+|.+...+....   +..+.|.|.+.|.|.  |.|+|+ ++|..+....   ....+++|.|.++..+      |+|.|
T Consensus         2 ~~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~-~~~~~~~~~~---~~~~~~~L~i~~~~~~------d~G~Y   71 (190)
T 2wv3_A            2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWT-KNGVELTATR---KNASNMEYRINKPRAE------DSGEY   71 (190)
T ss_dssp             -CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEE-ETTEECTTCC---BCCSEEEEEESSCCGG------GCEEE
T ss_pred             CCCcccccceEEEccCCceEEEEEEeccCCCCceEEEEE-ECCEECcccc---eEeccEEEEEecCCcc------cCEEE
Confidence            3677777554432   233999999999998  899997 4788775432   1225578999888665      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEEe
Q psy5697         120 RCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +|.|.|. |.. .+..+.|..
T Consensus        72 ~C~~~n~-~~~~~~~~l~V~~   91 (190)
T 2wv3_A           72 HCVYHFV-SAPKANATIEVKA   91 (190)
T ss_dssp             EEEEEET-TEEEEEEEEEEEC
T ss_pred             EEEEEeC-CcccccEEEEEec
Confidence            9999999 765 444555553

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.29  E-value=4.8e-12  Score=83.69  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=58.7

Q ss_pred             CCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCc---EEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS---LMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs---L~i~~~~~~~~~~~~d~  116 (145)
                      ...+|.|+..|.+ ....  .+.|.|.+.|.|.| |+|++ ||..+.... ...+..+|.   |.|.++..+      |+
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k-~~~~l~~~~-~~~~~~~~~~~~L~I~~v~~~------D~   75 (103)
T 2e7b_A            5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPGD-KYSLRQEGAMLELVVRNLRPQ------DS   75 (103)
T ss_dssp             CCCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEE-SSSBCCCSS-SEEEEECSSEEEEEECSCCTT------TC
T ss_pred             CCCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEE-CCEECCCCC-cEEEEEcCCEEEEEEccCCcc------cC
Confidence            3556777777766 2223  39999999999999 99985 777765433 234445664   999988765      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.    +|.. .+..+.|..
T Consensus        76 G~Y~C~----~g~~~~~~~l~V~~   95 (103)
T 2e7b_A           76 GRYSCS----FGDQTTSATLTVTA   95 (103)
T ss_dssp             CCEEEE----CSSCBCCBCEEEEC
T ss_pred             EEEEEE----ECCcEEEEEEEEEe
Confidence            999998    4544 344566664

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.28  E-value=3.3e-11  Score=93.86  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEcCCCC-CccCeEEEeeEeccCCC--EEEEEccCCeEeecccCc-eEEeeCCc------EEEcCCCCCCCC
Q psy5697          42 ENEHYPFRIKSAPGG-NRTRGLELTRQTRYEPS--QLGWRFSNNTVIAYVKDL-RIALSNGS------LMFPPFPETGFR  111 (145)
Q Consensus        42 ~~~~~P~~i~~p~~~-~~~g~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~-~~~~~~Gs------L~i~~~~~~~~~  111 (145)
                      ....+|.+...+... .+..+.|.|.+.|.|+|  +|+|+ +||+.+...... .....+|+      |.|.++..+   
T Consensus       218 ~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~-k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~---  293 (327)
T 2wng_A          218 TIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWL-ENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHR---  293 (327)
T ss_dssp             TBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEE-ETTEEEEEEECCSCEECTTSCEEEEEEEEC---------
T ss_pred             ccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEEE-ECCeEccCcccCceEECCCCcEEEEEEEEEcccccc---
Confidence            345678776665542 23348999999996544  89997 588887642211 23344554      556554433   


Q ss_pred             CCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697         112 PDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                         |+|.|+|.|+|+.|...++.+.+++
T Consensus       294 ---d~G~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          294 ---DDVKLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             ----CCEEEEEEEETTCCCEEEEEECC-
T ss_pred             ---CCCEEEEEEEeCCCCCchhheEEEe
Confidence               8999999999999999888777664

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.28  E-value=1.4e-11  Score=91.11  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=50.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|.|.|.|+|++..+.++.   +... ...+++|.|.++..+      |+|.|+|.|.|..|.. ....+.|.
T Consensus        19 v~L~C~~~g~P~p~i~W~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~~~~~l~V~   89 (202)
T 1vca_A           19 VSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPVSFG------NEHSYLCTATCESRKLEKGIQVEIY   89 (202)
T ss_dssp             EEEEEEEESCSSCEEEEEETTCCCCS---SEEEEETTEEEEEESSCCGG------GCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeecCCCCCeEEEECCCCCCcc---ceEEEcCCccEEEECcCCHH------HCEEEEEEEEECCceEeeEEEEEEE
Confidence            99999999999999999863333321   1111 122347999888655      8999999999999875 33355555


Q ss_pred             ecc
Q psy5697         139 ADS  141 (145)
Q Consensus       139 ~~~  141 (145)
                      ..+
T Consensus        90 ~~p   92 (202)
T 1vca_A           90 SFP   92 (202)
T ss_dssp             BCC
T ss_pred             eCC
Confidence            433

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.28  E-value=4e-11  Score=80.55  Aligned_cols=81  Identities=11%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             CCCEEEEcCCCC-Ccc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPGG-NRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~~-~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+|.|...|.+. ...  .+.|.|.+.|.  |.|+|++ ||..+....+ ..+..+|   +|.|.++..+      |+|.
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~l~~~~~-~~~~~~~~~~~L~I~~v~~~------D~G~   87 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWK-GHETLRDGDR-HSLRQDGARCELQIRGLVAE------DAGE   87 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEE-SSSBCCCSSS-EEEEEETTEEEEEECSCCST------TCEE
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEE-CCEECCCCCc-EEEEECCCEEEEEECCCChh------hCEE
Confidence            457888888772 233  39999999885  7899985 7777764433 3444455   7999988765      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEEe
Q psy5697         119 YRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |+|.|    |.. .+..+.|..
T Consensus        88 Y~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           88 YLCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             EEEEE----TTEEEEEEEEECC
T ss_pred             EEEEe----CCCCEEEEEEEeC
Confidence            99999    544 344555553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.27  E-value=9.1e-12  Score=90.27  Aligned_cols=120  Identities=13%  Similarity=-0.012  Sum_probs=73.9

Q ss_pred             eeceee-eecCceeEeeccccCccc--CCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRP--LGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWR   78 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~   78 (145)
                      |.|..+ ..|++.|.|...+.....  ...+.  ..+   .....+|.+...|......|  +.|.|.+.|.| |.++|+
T Consensus        54 L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~--l~V---~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~-~~~~w~  127 (184)
T 2gi7_A           54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLE--LVA---TGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-DQFALY  127 (184)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEBCCCCCEE--EEE---ESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC-CEEEEE
T ss_pred             EEECcCChhhCceEEEEEEcCCCccCCCCCEE--EEe---cCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC-cEEEEE
Confidence            344444 678899999876543211  11111  111   11234677777774433333  99999998755 799998


Q ss_pred             ccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce----EEEEEEEE
Q psy5697          79 FSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI----LSRFVHVK  138 (145)
Q Consensus        79 ~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~----~s~~v~v~  138 (145)
                      + ||..+...  ......+++|.|.++..+      |+|.|+|.|.|..+..    .|..+.|.
T Consensus       128 k-~g~~~~~~--~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  182 (184)
T 2gi7_A          128 K-EGDPAPYK--NPERWYRASFPIITVTAA------HSGTYRCYSFSSRDPYLWSAPSDPLELV  182 (184)
T ss_dssp             E-CCCCTTSC--CCCEEEEESSSEEEETTC------CSEEEEEEEECTTSTTBCCCCCCCEEEE
T ss_pred             E-CCCcCcce--ecCCCceEEEEEccCCcc------CCeEEEEEEEeCCCCcccCCCCCcEEEE
Confidence            5 77665421  122334668899888765      8999999999987632    34455543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.27  E-value=1.3e-11  Score=82.25  Aligned_cols=84  Identities=11%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             CCCCCEEEEcCCCC-Ccc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCc---EEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPGG-NRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS---LMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p~~~-~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs---L~i~~~~~~~~~~~~d~  116 (145)
                      ...+|.|+..|.+. ...  .+.|.|.+.|.  |.|+|++ +|..+....+. .+..+|.   |.|.++..+      |+
T Consensus         5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k-~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~------D~   74 (108)
T 2dm7_A            5 SSGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKK-GPETLRDGGRY-SLKQDGTRCELQIHDLSVA------DA   74 (108)
T ss_dssp             SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEES-SSSBCCSSSSC-EEEEETTEEEEEESSCCTT------TC
T ss_pred             cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEE-CCEECCCCCCE-EEEecCCEEEEEECCCCcc------cC
Confidence            45678887777662 223  39999999886  7899985 77776543333 3344554   999988765      89


Q ss_pred             eEEEEEEEcCCCceEEEEEEEEe
Q psy5697         117 TVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      |.|+|.|.|.   ..+..+.|..
T Consensus        75 G~Y~C~a~n~---~~~~~l~V~~   94 (108)
T 2dm7_A           75 GEYSCMCGQE---RTSATLTVRA   94 (108)
T ss_dssp             SEEEEEETTE---EEEEECEEEC
T ss_pred             EEEEEEEcCC---EEEEEEEEec
Confidence            9999999663   2334555553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.25  E-value=5.6e-11  Score=90.37  Aligned_cols=118  Identities=14%  Similarity=0.041  Sum_probs=72.8

Q ss_pred             eecCceeEeeccccCcccCC-ceeeeEEEeccCCCCCCCEEEEcCCCC-Ccc--CeEEEeeEeccCC-CEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLG-YLVGNIVYSSRSENEHYPFRIKSAPGG-NRT--RGLELTRQTRYEP-SQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~P~~i~~p~~~-~~~--g~~L~C~a~G~P~-P~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+....... .+.   + ........+|.+...|... ...  .+.|.|.+.|.|+ +.+.|+ +++..
T Consensus       153 ~~d~G~Y~C~a~n~~~~~~s~~~~---l-~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~-~~~~~  227 (292)
T 4dkd_C          153 FIQSQDYQCSALMGGRKVMSISIR---L-KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQ-HNNTK  227 (292)
T ss_dssp             GGGCSEEEEEECSTTSCEECCCEE---E-EEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECC-BSSCC
T ss_pred             HHHCeEEEEEEEeCCCceeEEEEE---E-EEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEe-CCCcc
Confidence            57888999988653322111 111   1 1111223478888888762 223  3899999999775 568886 46655


Q ss_pred             eecccCce----EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          85 IAYVKDLR----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        85 i~~~~~~~----~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.......    ....+++|.|.++..+      |+|.|+|.|+|.+|.. .+..+.|.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~~g~~~~~~~l~V~  280 (292)
T 4dkd_C          228 LAIPQQSDFHNNRYQKVLTLNLDQVDFQ------HAGNYSCVASNVQGKHSTSMFFRVV  280 (292)
T ss_dssp             CCCCBEEEEETTEEEEEEEEEESSCCTT------SCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             cccCccceeccceeeeEEEEEECccChh------cCeEEEEEEecCCCCceeEEEEEEe
Confidence            43211111    1123458999988755      8999999999999996 34455554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=5.7e-13  Score=105.66  Aligned_cols=122  Identities=13%  Similarity=0.028  Sum_probs=77.6

Q ss_pred             cceeceeeeecCceeEeeccccCc-c--cCCcee---eeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEeccCC
Q psy5697           2 LNFHISTLLADADTYIIADRSLFP-R--PLGYLV---GNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRYEP   72 (145)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~p-~--~~~~~~---~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~   72 (145)
                      |+++-|.|.|||++.|+....... .  +.+.+.   -+.+.......+.+|.|...|.+ ....|  +.|.|.+.|.|.
T Consensus       108 l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~  187 (347)
T 2ifg_A          108 LVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGL  187 (347)
T ss_dssp             EECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSC
T ss_pred             EEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCC
Confidence            466778899999977655421100 0  000000   00011112345678999988877 33334  999999999999


Q ss_pred             CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe-EEEEEEEcCCCce
Q psy5697          73 SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVI  130 (145)
Q Consensus        73 P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G-~Y~C~A~N~~G~~  130 (145)
                      |.|+|++ ++..+...........+++|.|.++..+      |+| .|+|.|+|..|..
T Consensus       188 p~i~W~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~~Y~C~a~n~~g~~  239 (347)
T 2ifg_A          188 EQAGWIL-TELEQSATVMKSGGLPSLGLTLANVTSD------LNRKNVTCWAENDVGRA  239 (347)
T ss_dssp             CCCCEEE-SCCCSSEEECCCCCSSEEEEEEESCCST------TTTCCEEECCEETTEEC
T ss_pred             CEEEEEc-CCceeecccccceecccceEEEeeCChH------HCCCeEEEEEEcCCCCE
Confidence            9999986 4433221111113345678999988765      899 9999999999987

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.25  E-value=1.9e-11  Score=90.70  Aligned_cols=88  Identities=13%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CCCCEEEEcCC----C-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAP----G-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPD  113 (145)
Q Consensus        44 ~~~P~~i~~p~----~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~  113 (145)
                      ..+|+|++.+.    . ....|  +.|.|.+.|.|.|.|+|++ +|..+......   .....+++|.|.++..+     
T Consensus         9 ~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-----   82 (241)
T 3grw_A            9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPS-----   82 (241)
T ss_dssp             --CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEE-TTEECCGGGSTTCCEEEGGGTEEEECSCCGG-----
T ss_pred             CCCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEE-CCcccCCCCcccceeeeccceEEEEEeCCcc-----
Confidence            45777776643    1 22233  8999999999999999985 78877643321   34455668999888655     


Q ss_pred             CCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         114 VHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                       |+|.|+|.|.|..|.. .+..+.|.
T Consensus        83 -d~G~Y~C~~~~~~~~~~~~~~l~V~  107 (241)
T 3grw_A           83 -DRGNYTCVVENKFGSIRQTYTLDVL  107 (241)
T ss_dssp             -GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -cCEEEEEEEeecCCceEEEEEEEEe
Confidence             8999999999999987 34455554

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.25  E-value=5.2e-12  Score=91.97  Aligned_cols=86  Identities=12%  Similarity=0.063  Sum_probs=58.6

Q ss_pred             CCCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          45 HYPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+|.|...|...+..  .+.|.|.+.| |.|.+.|+| ||..+........ ...+++|.|.++..+      |+|.|+|
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C   75 (196)
T 3p2t_A            4 PKPTLWAEPGSVISWGNSVTIWCQGTL-EAREYRLDK-EESPAPWDRQNPLEPKNKARFSIPSMTED------YAGRYRC   75 (196)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCT-TCCEEEEEE-TTSCSCSEEECCCSSSSEEEEEESSCCGG------GCEEEEE
T ss_pred             CCCEEEccCCCcCCCCCcEEEEeeCCC-CCCEEEEEE-CCCCCcccccccccCCceEEEEeccCCcc------cCceEEE
Confidence            367887777763333  3999999999 889999985 6665532110001 123468999888765      8999999


Q ss_pred             EEEcCCCc-eEEEEEEEE
Q psy5697         122 RASNEAGV-ILSRFVHVK  138 (145)
Q Consensus       122 ~A~N~~G~-~~s~~v~v~  138 (145)
                      .|.|..|. ..+..+.|.
T Consensus        76 ~a~n~~g~~~~s~~~~l~   93 (196)
T 3p2t_A           76 YYRSPVGWSQPSDPLELV   93 (196)
T ss_dssp             EEEETTEEBCCCCCEEEE
T ss_pred             EEeCCCcccCCCccEEEE
Confidence            99999993 344444443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=99.90  Aligned_cols=109  Identities=13%  Similarity=0.063  Sum_probs=63.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC---CCccC--eEEEeeEeccCCCEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG---GNRTR--GLELTRQTRYEPSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~---~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.   ..  ..      .......+|.+...|..   ....|  +.|.|.+.|+|+|+|+|+ +||..
T Consensus       299 ~~D~G~Y~C~A~N~---~~--~~------~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~-k~g~~  366 (423)
T 3qs7_E          299 RNDTGYYTCSSSKH---PS--QS------ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT-FSRKS  366 (423)
T ss_dssp             TTTCEEEEEEETTE---EE--EE------EEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEE-ETTEE
T ss_pred             HHHCEEEEEEEecC---CC--ce------EEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEE-ECCEE
Confidence            45667777776554   10  01      11222345666655532   22333  899999999999999997 58888


Q ss_pred             eecccCceEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          85 IAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        85 i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +.....   ...++ .+.+.....      .|+|.|+|.|+|.+|+. .+..+.|..
T Consensus       367 l~~~~~---~~~~~~~~~~~~~~~------~D~G~YtC~A~N~~G~~~~s~~L~v~~  414 (423)
T 3qs7_E          367 FPCEQK---GLDNGYSISKFCNHK------HQPGEYIFHAENDDAQFTKMFTLNIRS  414 (423)
T ss_dssp             EECBCC---BCSSSSEEEEECCCT------TCCSCEEEEEEETTEEEEEEEEEC---
T ss_pred             CCCccc---cccCCcEEEEEeccc------ccCEEEEEEEEcCCceEEEEEEEEEec
Confidence            764321   00111 121122222      38999999999999998 555666653

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.24  E-value=8.7e-12  Score=90.66  Aligned_cols=114  Identities=16%  Similarity=0.017  Sum_probs=68.4

Q ss_pred             eecCceeEeeccccCc--ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFP--RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+..-  .....+.  ..+.   ....+|.+...|...+..|  +.|.|.+.| |+|.+.|+| ||..+
T Consensus        66 ~~D~G~Y~C~~~~~~~~~~~s~~~~--l~V~---~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~  138 (188)
T 1oll_A           66 SRMAGQYSCIYRVGELWSEPSNLLD--LVVT---EMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLK-EGRSS  138 (188)
T ss_dssp             GGGCEEEEEEEEETTEECCCCCCEE--EEEE---SCSCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEE-ESSSC
T ss_pred             cccCeEEEEEecCCCCCCCCCCceE--EEec---ccCCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEE-CCccc
Confidence            5788888887643211  1111111  0111   1123677776664433333  899999987 568999985 66554


Q ss_pred             ecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC--ceEEEEEEEE
Q psy5697          86 AYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG--VILSRFVHVK  138 (145)
Q Consensus        86 ~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G--~~~s~~v~v~  138 (145)
                      ...  ......+++|.|.++..+      |+|.|+|.|+|...  +..|..+.|.
T Consensus       139 ~~~--~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~n~~~~~s~~S~~~~l~  185 (188)
T 1oll_A          139 HVQ--RGYGKVQAEFPLGPVTTA------HRGTYRCFGSYNNHAWSFPSEPVKLL  185 (188)
T ss_dssp             EEE--EEECSSEEEEEEEECCGG------GCEEEEEECEEETTEECCCCCCEEEE
T ss_pred             ccc--ccCCCceeEEEECCCCcC------CCcEEEEEEEcCCCcCCCCCCcEEEE
Confidence            321  112234568999988765      89999999999752  3345555544

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.24  E-value=2.9e-11  Score=94.73  Aligned_cols=106  Identities=15%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             eecCc-eeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEccCCeE
Q psy5697          10 LADAD-TYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~   84 (145)
                      ..|++ .|.|...+......   . ..+.   .....+|.+...+.. ..  +..+.|.|.+.|.| .|.|+|++ ||..
T Consensus        98 ~~D~Gs~Y~C~a~n~~g~~~---~-~~~~---~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k-~~~~  169 (329)
T 3oq3_B           98 SNDSHRRYLCTVTTKNGDCV---Q-GIVR---SHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQE  169 (329)
T ss_dssp             GGGGGCCEEEEEECTTSCEE---E-EEEE---EEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEE-TTEE
T ss_pred             hHhCCCcEEEEEEeCCCcee---e-EEEE---EEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEE-CCcc
Confidence            56888 88887755432211   0 1010   111223433333222 22  23499999999999 99999985 7777


Q ss_pred             eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC--CCce
Q psy5697          85 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE--AGVI  130 (145)
Q Consensus        85 i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~--~G~~  130 (145)
                      +.... .+....+++|.|.++..+      |+|.|+|.|+|.  .|..
T Consensus       170 l~~~~-~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~g~~  210 (329)
T 3oq3_B          170 LIIDG-TKYSQSGQNLIIHNPELE------DSGRYDCYVHYDDVRIKN  210 (329)
T ss_dssp             CCCSS-SSEEEETTEEEECSCCGG------GCEEEEEEEEECCTTSSS
T ss_pred             CCCCC-ceEecCCCEEEEeecChh------hCEEEEEEEEecccCCCc
Confidence            75322 233334789999988765      899999999998  7654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.23  E-value=2e-11  Score=88.46  Aligned_cols=80  Identities=10%  Similarity=-0.033  Sum_probs=57.6

Q ss_pred             CCCCCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          43 NEHYPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        43 ~~~~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ...+|.|...|...+..  .++|.|.+.| |.|.++|+| ||..        ....+++|.|.++..+      |+|.|+
T Consensus         5 ~~~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~W~k-~g~~--------~~~~~~~L~i~~v~~~------D~G~Y~   68 (184)
T 2gi7_A            5 PLPKPSLQALPSSLVPLEKPVTLRCQGPP-GVDLYRLEK-LSSS--------RYQDQAVLFIPAMKRS------LAGRYR   68 (184)
T ss_dssp             CBCCCEEEEESCSEEETTCCEEEEEECST-TCSEEEEEE-TTTC--------CEESSSEEEESSCCGG------GCEEEE
T ss_pred             CCCCCeEEeCCCccccCCCcEEEEEeCCC-CCCEEEEEE-CCcc--------ccCcccEEEECcCChh------hCceEE
Confidence            34567888777753333  3999999999 899999985 6543        1235678999988765      899999


Q ss_pred             EEEEcCCCc-eEEEEEEEE
Q psy5697         121 CRASNEAGV-ILSRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~-~~s~~v~v~  138 (145)
                      |.|.|..|. ..+..+.|.
T Consensus        69 C~a~n~~g~~~~s~~~~l~   87 (184)
T 2gi7_A           69 CSYQNGSLWSLPSDQLELV   87 (184)
T ss_dssp             EEEEETTEEBCCCCCEEEE
T ss_pred             EEEEcCCCccCCCCCEEEE
Confidence            999999884 234333333

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.23  E-value=2.9e-11  Score=95.75  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             CCCCCEEEEcC-CC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCC
Q psy5697          43 NEHYPFRIKSA-PG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        43 ~~~~P~~i~~p-~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ...+|.|...+ ++ ..  +..+.|.|.+.|+|.|+|+|++ ||..+....  .......+|+|.|.-....  ....|+
T Consensus        13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~--~~~~D~   89 (404)
T 3p3y_A           13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRRSGTLVIDFRSGG--RPEEYE   89 (404)
T ss_dssp             CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEE-TTEECCGGGCSSCBCCSSSCCCBCCCTTTC--CTTSSC
T ss_pred             ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEE-CCEEeeeecCCcceEecCCceEEEEeccCC--CCccCC
Confidence            34678777654 33 22  2338999999999999999984 888765322  2223345778877521110  122389


Q ss_pred             eEEEEEEEcCCCceEEEEEEEE
Q psy5697         117 TVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      |.|+|.|.|..|...+..+.|.
T Consensus        90 G~Y~C~a~n~~g~~~s~~~~l~  111 (404)
T 3p3y_A           90 GEYQCFARNKFGTALSNRIRLQ  111 (404)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCeEeeeeEEEE
Confidence            9999999999999876666555

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.23  E-value=2.7e-11  Score=88.62  Aligned_cols=110  Identities=12%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCcc--CeEEEeeEec-cCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRT--RGLELTRQTR-YEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G-~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.....    ++..+.-.......+|.+...++. ....  .+.|.|.+.| .|+| +|+|++ ||..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~----~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~  154 (213)
T 3d9a_L           80 TEDFGMYFCQQSNSWPYT----FGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSE  154 (213)
T ss_dssp             GGGCEEEEEEECSSSSCE----ECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             hhhCEEEEEeeecCCcce----eCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEc-CCCc
Confidence            578889988886643322    111100001222346776665544 2112  3899999998 6666 899985 8887


Q ss_pred             eecc-cCce--EEeeC------CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYV-KDLR--IALSN------GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~-~~~~--~~~~~------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +... ....  ....+      ++|.|.++..+      |+|.|+|.|+|.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          155 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTSTS  203 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------HCCEEEEEEECTTCSS
T ss_pred             CcceeeecCCCccCCCCCEEEEEEEEEeccccC------CCCEEEEEEEEccCCC
Confidence            7543 1000  01112      37888877654      7999999999997764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.22  E-value=1.2e-10  Score=91.18  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=50.5

Q ss_pred             CeEEEeeEeccC---CC-EEEEEccCCeEeecccCceEEe-------eCCcEEEcCCCCCCCCCCCCCe-EEEEEEEcCC
Q psy5697          60 RGLELTRQTRYE---PS-QLGWRFSNNTVIAYVKDLRIAL-------SNGSLMFPPFPETGFRPDVHST-VYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~P---~P-~i~W~~~dg~~i~~~~~~~~~~-------~~GsL~i~~~~~~~~~~~~d~G-~Y~C~A~N~~  127 (145)
                      .+.|.|.+.|.|   +| .|+|++ ||..+..........       .+++|.|.++..+      |+| .|+|.|+|.+
T Consensus       245 ~~~l~C~~~g~p~~~~~i~v~W~~-~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~~Y~C~a~N~~  317 (329)
T 3oq3_B          245 PANITCTAVSTSLLVDDVLIDWEN-PSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE------YIGNTYTCRGHNYY  317 (329)
T ss_dssp             CEEEEEEEEETTCCTTCCEEEEEC-TTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGG------GTTCEEEEEEECSS
T ss_pred             CEEEEEEEEECCCCCCCcEEEEEE-CCeeeeccCCceeeeecccCceeEeEEEEEeccHH------HCCCcEEEEEEecC
Confidence            399999999998   88 999975 666642211111111       3568999888665      899 9999999999


Q ss_pred             Cce-EEEEEEE
Q psy5697         128 GVI-LSRFVHV  137 (145)
Q Consensus       128 G~~-~s~~v~v  137 (145)
                      |.. .+..+.|
T Consensus       318 G~~~~~~~l~v  328 (329)
T 3oq3_B          318 FDKTLTTTVVL  328 (329)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            997 3334433

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.22  E-value=6.9e-11  Score=98.66  Aligned_cols=72  Identities=15%  Similarity=0.015  Sum_probs=50.8

Q ss_pred             CeEEEeeEe----ccCCCEEEEEccCCeEeecccC------ceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQT----RYEPSQLGWRFSNNTVIAYVKD------LRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~----G~P~P~i~W~~~dg~~i~~~~~------~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.|.|.+.    |+|.|+|+|++ ||..+.....      ......+   ++|.|.++..+      |+|.|+|.|+|.
T Consensus       459 ~v~L~C~~~~~~~~~p~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~N~  531 (585)
T 2ocw_A          459 TLKVPCHFPCKFSSYEKYWCKWNN-TGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA------DEGWYWCGVKQG  531 (585)
T ss_pred             cEEEEEEecCCCCCCccEEEEEee-cCceeeeccCCCCCcceEEecCcccEEEEEECCCCcc------cCeEEEEEeEeC
Confidence            389999997    88999999975 7766542211      1111112   38999888765      899999999999


Q ss_pred             CCceEEEEEEEE
Q psy5697         127 AGVILSRFVHVK  138 (145)
Q Consensus       127 ~G~~~s~~v~v~  138 (145)
                      +|...+..++|.
T Consensus       532 ~G~~~~~~~~l~  543 (585)
T 2ocw_A          532 HFYGETAAVYVA  543 (585)
T ss_pred             CCccEEEEEEEE
Confidence            997754434443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.22  E-value=6.3e-11  Score=85.74  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeE---------eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTV---------IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~---------i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|+|.|.|+|++.+...         +......+....+++|.|.++..+      |+|.|+|.|.|..|..
T Consensus        18 ~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~------D~G~Y~C~~~~~~g~~   91 (212)
T 1f97_A           18 SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQN   91 (212)
T ss_dssp             CEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGG------GCEEEEEEEEETTSSS
T ss_pred             CEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcc------cCeEEEEEEEccCCCc
Confidence            3999999999999999998643321         111111234445689999988765      8999999999998843


Q ss_pred             -EEE--EEEEEeccC
Q psy5697         131 -LSR--FVHVKADSR  142 (145)
Q Consensus       131 -~s~--~v~v~~~~~  142 (145)
                       .+.  .+.|...+.
T Consensus        92 ~~~~~~~l~V~~~p~  106 (212)
T 1f97_A           92 YGEVSIHLTVLVPPS  106 (212)
T ss_dssp             EEEEEEEEEEEBCCC
T ss_pred             ccEEEEEEEEEcCCC
Confidence             333  444444433

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.22  E-value=7.5e-11  Score=88.38  Aligned_cols=87  Identities=17%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEcc-CCeEeec-----------ccCceEEe-e--CCcEEEcCCCC
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFS-NNTVIAY-----------VKDLRIAL-S--NGSLMFPPFPE  107 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~-dg~~i~~-----------~~~~~~~~-~--~GsL~i~~~~~  107 (145)
                      +|.+...|.. ....  .+.|.|.+.|.|+|.|+|++. +|..+..           ........ .  .++|.|.++..
T Consensus       135 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  214 (247)
T 2ghw_B          135 ETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP  214 (247)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG
T ss_pred             ceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH
Confidence            4566666655 2333  399999999999999999863 3443210           01111111 1  23699988876


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCceEEE--EEEEE
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVILSR--FVHVK  138 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~~s~--~v~v~  138 (145)
                      +      |+|.|+|.|+|..+...+.  .+.|.
T Consensus       215 ~------D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          215 E------DFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             G------GCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             H------HCEEEEEEEccCCCceEcCCEEEEEC
Confidence            5      8999999999976555433  44443

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=85.86  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeec------ccCceEEe----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAY------VKDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~------~~~~~~~~----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|.|.|.|++.++..+..      ........    .+++|.|.++..+      |+|.|.|.|.|. |..
T Consensus        56 v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~n~-~~~  128 (145)
T 1z9m_A           56 VVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA------DEGEYTCSIFTM-PVR  128 (145)
T ss_dssp             EEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGG------GCEEEEEEECSS-SCE
T ss_pred             EEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChh------hCEEEEEEEEcC-CCc
Confidence            999999999999999998533222211      01111211    1458999988765      899999999999 876


Q ss_pred             -EEEEEEEEeccCCCC
Q psy5697         131 -LSRFVHVKADSRIPM  145 (145)
Q Consensus       131 -~s~~v~v~~~~~~p~  145 (145)
                       ....+.|...++.|+
T Consensus       129 ~~~~~L~V~~~P~~P~  144 (145)
T 1z9m_A          129 TAKSLVTVLGIPQKPI  144 (145)
T ss_dssp             EEEEEEEEECCCC---
T ss_pred             eEEEEEEEEeCCCCCc
Confidence             445677776666653

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.21  E-value=1e-10  Score=98.89  Aligned_cols=119  Identities=13%  Similarity=0.078  Sum_probs=74.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeec
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAY   87 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~   87 (145)
                      ..|++.|.|...+..........-...+   .....+|.+...+......|  +.|.|.+.+ |.|.|+|+ +||..+..
T Consensus       435 ~~d~G~Y~C~a~n~~g~~~~s~~~~v~v---~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~-~~g~~l~~  509 (642)
T 1e07_A          435 EKNSGLYTCQANNSASGHSRTTVKTITV---SAELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWW-VNGQSLPV  509 (642)
T ss_pred             hhhCeEEEEEEEcCCCCCcccceEEEEE---eccCCCceEecCCceeecCCCeEEEEEECCC-CCcEEEEE-ECCEeCCC
Confidence            4677788887766543222111101011   11123555544332222233  899999996 99999997 58888765


Q ss_pred             ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE--EEEEEEe
Q psy5697          88 VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVKA  139 (145)
Q Consensus        88 ~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s--~~v~v~~  139 (145)
                      ..+......+++|.|.++..+      |+|.|+|.|+|..|...+  ..+.|..
T Consensus       510 ~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~s~~~~l~V~~  557 (642)
T 1e07_A          510 SPRLQLSNGNRTLTLFNVTRN------DARAYVCGIQNSVSANRSDPVTLDVLY  557 (642)
T ss_pred             CCcEEEcCCCcEEEEeecChh------cCceEEEEeEcCCCCccCCCEEEEEEe
Confidence            443333334569999888655      899999999999998754  4555553

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.21  E-value=1.1e-10  Score=88.66  Aligned_cols=86  Identities=13%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             CCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+|.|...|.+ ..  +..+.|.|.+.|.|. .|+|++.||..+....+. ....+|   +|.|.++..+      |+|.
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~-~~~~~~~~~~L~i~~~~~~------D~G~   74 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRV-VVQKEGVRSRLTIYNANIE------DAGI   74 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTE-EEEEETTEEEEEECSCCGG------GCEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcE-EEecCCCEEEEEEccCCcc------cCEE
Confidence            46777777776 22  334999999999885 999987688776544333 333344   7999888655      8999


Q ss_pred             EEEEEEcCCCceEEEEEEEE
Q psy5697         119 YRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      |+|.|.|..|...+..+.|.
T Consensus        75 Y~C~~~n~~g~~~~~~~~l~   94 (291)
T 2wim_A           75 YRCQATDAKGQTQEATVVLE   94 (291)
T ss_dssp             EEEEEECSSSCEEEEEEEEE
T ss_pred             EEEEEecccCceEEEEEEEE
Confidence            99999999998866555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=4.9e-11  Score=95.66  Aligned_cols=71  Identities=20%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.| |+|.|+|++.++..+... ...+....+|+|.|.++..+      |+|.|+|+|+|..|.. .+..+.|.
T Consensus       264 ~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          264 LTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE------DGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             EEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTT------SCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcc------cCEEEEEEEecCCCccEEEEEEEEE
Confidence            899999999 999999986555443321 11122228899999988765      8999999999999987 44456554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.21  E-value=5.6e-11  Score=87.05  Aligned_cols=114  Identities=11%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEecc-CCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRY-EPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~-P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.....    ++..+.-.......+|.+...++. ..  +..+.|.|.+.|. |+| +|+|++ ||..
T Consensus        79 ~~D~G~Y~C~~~~~~~~~----~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~  153 (210)
T 1lk3_L           79 ADDTAIYFCQQSWNGPLT----FGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKI-DGTE  153 (210)
T ss_dssp             GGGCEEEEEEECSSSSCE----ECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             HHHCeEEEEEEEcCCCce----eCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEe-CCcc
Confidence            578889998886543322    111110001122346777665554 11  2238999999984 554 899984 8887


Q ss_pred             eecc-cCc--eEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEE
Q psy5697          85 IAYV-KDL--RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRF  134 (145)
Q Consensus        85 i~~~-~~~--~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~  134 (145)
                      +... ...  .....+|      +|.|.++..+      |+|.|+|.|+|..... +.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~~~~  207 (210)
T 1lk3_L          154 RRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYE------SHNLYTCEVVHKTSSSPVVKS  207 (210)
T ss_dssp             CCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEECTTCSSCEEEE
T ss_pred             CCCCceEccCCccCCCCCEEEEEEEEEChHHhc------cCCcEEEEEEecCCCCeeeee
Confidence            6532 000  0111233      5888776544      7999999999986643 4443

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.21  E-value=1e-10  Score=100.13  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CCCCCEEEEcCCCC-Ccc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCe
Q psy5697          43 NEHYPFRIKSAPGG-NRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        43 ~~~~P~~i~~p~~~-~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      ....|.|+..+.+. ...  .+.|.|.+.|.|.|+|+|+ +||..+...........++  +|.|..+...      |+|
T Consensus       479 ~~~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~-k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~------D~G  551 (573)
T 3uto_A          479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWH-KDDRELKQSVKYMKRYNGNDYGLTINRVKGD------DKG  551 (573)
T ss_dssp             GGGSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEE-ETTEECCSSSSEEEEEETTEEEEEECSCCGG------GCE
T ss_pred             cccCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEE-ECCEEcccCCcEEEEEcCCEEEEEEcCCCcc------cCc
Confidence            34578888888772 233  3899999999999999998 4888887655444444455  6888776544      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEE
Q psy5697         118 VYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      .|.|.|+|.+|+. ....+.|
T Consensus       552 ~Yt~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          552 EYTVRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCcEEEEEEEEE
Confidence            9999999999998 3334544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.21  E-value=9.3e-11  Score=86.25  Aligned_cols=117  Identities=9%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--e-EEEeeE-eccCCCEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--G-LELTRQ-TRYEPSQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~-~L~C~a-~G~P~P~i~W~~~dg~~   84 (145)
                      ..|++.|.|.........   .... +.-........|.+...+.. ....|  + .|.|.+ .|+|.|.|+|++ ||..
T Consensus        86 ~~D~G~Y~C~~~~~~~~~---~~~~-~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~-~~~~  160 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGT---AEAT-ARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQR  160 (231)
T ss_dssp             GGGCEEEEEEEECGGGCE---EEEE-EEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE-TTEE
T ss_pred             cccCceEEEEEEecCCCc---eEEE-EEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE-CCcc
Confidence            578888888865543111   1111 00001112334777776665 22233  5 999999 999999999984 7887


Q ss_pred             eeccc---CceEEe------eC------CcEEEcCCCCCCCCCCCCCeEEEEEEEc-----CCCceEEEEEEE
Q psy5697          85 IAYVK---DLRIAL------SN------GSLMFPPFPETGFRPDVHSTVYRCRASN-----EAGVILSRFVHV  137 (145)
Q Consensus        85 i~~~~---~~~~~~------~~------GsL~i~~~~~~~~~~~~d~G~Y~C~A~N-----~~G~~~s~~v~v  137 (145)
                      +....   ....+.      .+      ++|.|.... .     .|.|.|+|.|+|     ..|...+..+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~-~-----dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l  227 (231)
T 2pet_A          161 LEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK-D-----DRDASFHCAAHYSLPEGRHGRLDSPTFHL  227 (231)
T ss_dssp             CCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCG-G-----GGGCEEEEEEEEECGGGCEEEEECCCEEC
T ss_pred             CccccccccceeecceeEecCCCeEEEEEEEEEecch-h-----hCCceEEEEEEcCCcccccccccccceEE
Confidence            76433   111111      12      447765322 2     269999999999     455544444443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.21  E-value=9.5e-12  Score=90.73  Aligned_cols=86  Identities=12%  Similarity=0.000  Sum_probs=57.9

Q ss_pred             CCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeecccC-ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          45 HYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+|.|...|...+..|  +.|.|.+.|.|. .|+|+| ||..+..... ......+++|.|.++..+      |+|.|+|
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C   75 (196)
T 2d3v_A            4 SKATLWAEPGSVISRGNSVTIRCQGTLEAQ-EYRLVK-EGSPEPWDTQNPLEPKNKARFSIPSMTEH------HAGRYRC   75 (196)
T ss_dssp             CBCEEEEESCSEEETTCCEEEEEECCTTCC-EEEEEE-TTCSSCSEEECCCSSTTEEEEEESSCCGG------GCEEEEE
T ss_pred             CCCEEEeCCCCcccCCCeEEEEEeCCCCCc-EEEEEE-CCCCCCcccccccCCccccEEEeccCChh------HCeEEEE
Confidence            4678887777533333  999999999876 999985 6665532110 001223458999988765      8999999


Q ss_pred             EEEcCCCce-EEEEEEEE
Q psy5697         122 RASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~  138 (145)
                      .|.|..|.. .+..+.|.
T Consensus        76 ~a~n~~g~~~~s~~~~l~   93 (196)
T 2d3v_A           76 YYYSPAGWSEPSDPLELV   93 (196)
T ss_dssp             EEEETTEECBCCCCEEEE
T ss_pred             EEeCCCCcCCcCccEEEE
Confidence            999998854 34433333

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.21  E-value=3.1e-11  Score=89.98  Aligned_cols=76  Identities=9%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             CCEEEEcCCCCCcc--CeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YPFRIKSAPGGNRT--RGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P~~i~~p~~~~~~--g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .|+|+........+  .+.|.|.+. +.|.|+|+|+ +||+++...+..+.....  |  +|.|.++..+      |+|.
T Consensus         3 ~p~~~~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~-kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~------D~G~   75 (207)
T 3rbs_A            3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI-FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE------DEGT   75 (207)
T ss_dssp             ---CCEEEEEEECGGGCEEEEEECSCCCSCCEEEEE-ETTEEECSSSSCEEEECTTTCEEEEEESCCCGG------GCEE
T ss_pred             CCeeecCCceEEEeCCeEEEEEEEecCCCCCEEEEE-ECCEECccCCCEEEEEeCCCCEEEEEECCCChh------hCEE
Confidence            35555544322222  389999985 5899999998 589998755444433332  4  6999888765      8999


Q ss_pred             EEEEEEcCCCce
Q psy5697         119 YRCRASNEAGVI  130 (145)
Q Consensus       119 Y~C~A~N~~G~~  130 (145)
                      |+|.|.|  |..
T Consensus        76 Y~C~a~N--g~a   85 (207)
T 3rbs_A           76 YTFQLQD--GKA   85 (207)
T ss_dssp             EEEEEEE--TTE
T ss_pred             EEEEEEC--CCe
Confidence            9999999  544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.20  E-value=8.7e-11  Score=85.78  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             eceee-eecCceeEeeccccCccc----CCceeeeEEEeccCCCCCCCEEEEcCCC-CCccCeEEEeeEecc----CCCE
Q psy5697           5 HISTL-LADADTYIIADRSLFPRP----LGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTRGLELTRQTRY----EPSQ   74 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g~~L~C~a~G~----P~P~   74 (145)
                      .|..+ ..|+++|.|.........    ...+.-. |.    ....+|.+.. |.. ..+..+.|.|.+.|.    |+|+
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~-V~----~~~~~p~i~~-~~~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLE-VT----ALIEKPDIHF-LEPLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEE-EE----CCCCCCEEC---CCCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEE-Ee----cCCCCCceec-CccccCCCeEEEEEEeccCCCCCCCce
Confidence            34444 678889988775431000    0111100 11    1123565433 332 122338999999874    9999


Q ss_pred             EEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          75 LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        75 i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|++ +|..... +.   ...+++|.|.++..+      |.|.|+|.|+|..|.. .++.++|.
T Consensus       159 v~W~~-~~~~~~~-~~---~~~~~~L~i~~~~~~------~~g~Y~C~a~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          159 FSWTG-NALSPLD-PE---TTRSSELTLTPRPED------HGTNLTCQMKRQGAQVTTERTVQLN  212 (214)
T ss_dssp             EEEES-STTSSSC-SS---CCCSSEEEECCCTTC------CSCEEEEEEECC----CCEEEEECC
T ss_pred             EEEeC-CCCccCC-CC---ceeEEEEEEecccHH------cCcEEEEEEEeCCCCcceEEEEEEE
Confidence            99985 5543221 11   134668999776433      7899999999997654 55555553

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.20  E-value=4.9e-11  Score=88.28  Aligned_cols=80  Identities=16%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             CCCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ...+.|+..|.+ ...  ..+.|.|.+.|+|.|.|+|++ +|..+...       .+++|.|.++..+      |+|.|+
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~-~~~~~~~~-------~~~~L~i~~v~~~------d~G~Y~   81 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEIPNG-------NTSELIFNAVHVK------DAGFYV   81 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEE-TTEECTTC-------CSSEEEETTCCGG------GCEEEE
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEE-CCEECCCC-------CCCEEEEccCChh------hCeEeE
Confidence            345678888877 223  339999999999999999985 77765432       3568999888655      899999


Q ss_pred             EEEEcCCCceEEEEEEE
Q psy5697         121 CRASNEAGVILSRFVHV  137 (145)
Q Consensus       121 C~A~N~~G~~~s~~v~v  137 (145)
                      |.|.|..|...+..+.+
T Consensus        82 C~~~n~~~~~~s~~~~l   98 (218)
T 3k0w_A           82 CRVNNNFTFEFSQWSQL   98 (218)
T ss_dssp             EEEECTTCCEECCCEEE
T ss_pred             EEEEcCCCCceeeEEEE
Confidence            99999999765543333

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=80.46  Aligned_cols=84  Identities=8%  Similarity=-0.055  Sum_probs=60.2

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeeccc--C-------ceEEeeCC---cEEEcCCCCCCC
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVK--D-------LRIALSNG---SLMFPPFPETGF  110 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~-------~~~~~~~G---sL~i~~~~~~~~  110 (145)
                      +|.|++.+.+ .+..|  +.|+|.++|  .|+++|+ +||++|....  .       ...+..+|   +|.|.++..+  
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~-knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~--   82 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWF-LNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ--   82 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEE-ESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST--
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEE-ECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH--
Confidence            4688899888 33334  999999998  7899997 5899887543  0       22444455   7999988766  


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy5697         111 RPDVHSTVYRCRASNEAGVILSRFVHVKAD  140 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~~  140 (145)
                          |+|.|+|...+..  ..++.++|...
T Consensus        83 ----D~G~Y~~~~~~~~--~ssA~L~V~~~  106 (112)
T 2e6q_A           83 ----DSGALVGFSCPGV--QDSAALTIQES  106 (112)
T ss_dssp             ----TCSEEEEEEETTE--EEEEEEEEECS
T ss_pred             ----HCccEEEEEECCe--eEEEEEEEeCC
Confidence                8999977554432  35678888744

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.19  E-value=2.8e-11  Score=88.53  Aligned_cols=111  Identities=10%  Similarity=0.112  Sum_probs=66.9

Q ss_pred             eecCceeEeeccccCcc--cCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccC-C-CEEEEEccCC
Q psy5697          10 LADADTYIIADRSLFPR--PLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYE-P-SQLGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~-P~i~W~~~dg   82 (145)
                      ..|++.|.|........  ..+... . +.. ......+|.+...+.+ ..  +..+.|.|.+.|.+ + ++|+|+ +||
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~~~-~-l~V-~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~-k~g  154 (213)
T 3mj8_L           79 AGDEADYYCQSWDGTNSAWVFGSGT-K-VTV-LGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWE-ADG  154 (213)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEBCCE-E-EEE-ECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEE-ETT
T ss_pred             hhhCEEEEEEeccCCcceeEEcCce-E-EEE-eCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEE-cCC
Confidence            67888998887654331  100000 0 111 1122367888777765 22  23389999999974 3 399997 488


Q ss_pred             eEeeccc--CceE-----EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          83 TVIAYVK--DLRI-----ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        83 ~~i~~~~--~~~~-----~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..+....  ....     ....++|.|.++..+      |+|.|+|.|+|..|..
T Consensus       155 ~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~  203 (213)
T 3mj8_L          155 TPITQGVKTTQPSKSDSKYMATSYLTMTADAWK------SRNTFICKVTHGGNTV  203 (213)
T ss_dssp             EEECTTEEECCCEEETTEEEEEEEEEEESHHHH------SCSCEEEEEEETTEEE
T ss_pred             cccCCCcccCCcCccCCcEEEEEEEEEeHHHcC------CCCEEEEEEEECCccE
Confidence            8875311  0001     111235778766544      7999999999999765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.19  E-value=5e-11  Score=91.48  Aligned_cols=80  Identities=10%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             CCCCEEEEcCCCCCccC--eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPGGNRTR--GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~~~~~g--~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|++.+......|  +.|.|.+.|. |.|+|+|++ ||..+...........+++|.|.++..+      |+|.|+
T Consensus         5 ~~~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~   77 (317)
T 2y25_A            5 FTGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKK------DAGIYE   77 (317)
T ss_dssp             SSCCEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCSCC-----CCEEEEETTCCST------TCSCEE
T ss_pred             cCCCcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEE-CCeEcCCCCcEEEECCeEEEEEccCCcc------cCeEEE
Confidence            35677775543223333  9999999998 889999984 7888764333222233448999888765      899999


Q ss_pred             EEEEcCCCce
Q psy5697         121 CRASNEAGVI  130 (145)
Q Consensus       121 C~A~N~~G~~  130 (145)
                      |.|+|..|..
T Consensus        78 C~~~n~~g~~   87 (317)
T 2y25_A           78 VILKDDRGKD   87 (317)
T ss_dssp             EEEESSSCEE
T ss_pred             EEEECCCCcE
Confidence            9999999976

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.18  E-value=8.2e-11  Score=86.69  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEE-EeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEec-cCCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIV-YSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTR-YEPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G-~P~P-~i~W~~~dg~   83 (145)
                      ..|+++|.|.......... ..++..+ .........+|.+...++. ....|  +.|.|.+.| +|.| +|+|+ +||.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~-~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-~~g~  165 (219)
T 1c1e_H           88 NEDMATYFCARGTTIVRAM-DYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN-SGSL  165 (219)
T ss_dssp             GGGCEEEEEEEEETTTTEE-EEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG-GGTB
T ss_pred             cccCEEEEEEEeccCcccc-eeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE-eCCc
Confidence            5788888888755321000 0111100 0011112345766554443 33333  899999999 9999 99996 5776


Q ss_pred             EeecccCceEEe-----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIAYVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~~~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+..........     ..++|.|... ..      |+|.|+|.|+|..|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~------d~g~Y~C~a~n~~~~~  210 (219)
T 1c1e_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSS-PR------PSETVTCNVAHPASST  210 (219)
T ss_dssp             CTTEEECCCEESSSCEEEEEEEEEESS-ST------TTSCCEEEEEEGGGTE
T ss_pred             ccceEecCCcccCCeEEEEEEEEEecc-cC------CCCEEEEEEEeCCCCc
Confidence            532111111111     1135777322 11      5699999999998875

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.18  E-value=6.1e-11  Score=92.81  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             eEEEeeE-----eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC-Cce--EE
Q psy5697          61 GLELTRQ-----TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA-GVI--LS  132 (145)
Q Consensus        61 ~~L~C~a-----~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~-G~~--~s  132 (145)
                      +.|.|.+     .|.|.|.|+|+ +||..+...  .+....+.+|.|.++..+      |+|.|+|.|+|.. |..  .+
T Consensus       138 ~~l~C~~~~~~~~g~p~~~v~W~-k~~~~l~~~--~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~~g~~~~~~  208 (349)
T 4dep_C          138 QRITCPNVDGYFPSSVKPTITWY-MGCYKIQNF--NNVIPEGMNLSFLIALIS------NNGNYTCVVTYPENGRTFHLT  208 (349)
T ss_dssp             EEEECCSCTTSSCTTSCCEEEEE-ETTEECCSC--SSEEEETTEEEEESCCGG------GCEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEcCCCcccccCCCCceEEEe-eCCEECCCc--cceeecCCEEEEeeeeec------CCcEEEEEEEEeeCCEEEEEE
Confidence            8999986     89999999998 488887532  233444557999988765      8999999999998 654  45


Q ss_pred             EEEEEEe
Q psy5697         133 RFVHVKA  139 (145)
Q Consensus       133 ~~v~v~~  139 (145)
                      ..+.|..
T Consensus       209 ~~~~l~v  215 (349)
T 4dep_C          209 RTLTVKV  215 (349)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6665553

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.18  E-value=3.2e-11  Score=94.08  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeE-EEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeE---eccC-CCEEEEEccC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNI-VYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQ---TRYE-PSQLGWRFSN   81 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a---~G~P-~P~i~W~~~d   81 (145)
                      ..|++.|.|...+............. +.........+|.++..+.. ....|  +.|.|.+   .|+| +|.+.|+ +|
T Consensus       189 ~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~-~~  267 (339)
T 3o4o_C          189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT-AN  267 (339)
T ss_dssp             GGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEE-SS
T ss_pred             HhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEE-EC
Confidence            56788888887654322111111111 11111223457888777665 23333  8999999   9999 9999997 57


Q ss_pred             CeEeecc--------cCceEEeeCC------cEEEcCCCCCCCCCCCCC-eEEEEEEEcCCCce
Q psy5697          82 NTVIAYV--------KDLRIALSNG------SLMFPPFPETGFRPDVHS-TVYRCRASNEAGVI  130 (145)
Q Consensus        82 g~~i~~~--------~~~~~~~~~G------sL~i~~~~~~~~~~~~d~-G~Y~C~A~N~~G~~  130 (145)
                      |..+...        ........+|      +|.|.++..+      |+ |.|+|.|+|.+|+.
T Consensus       268 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~------d~~G~Y~C~a~N~~G~~  325 (339)
T 3o4o_C          268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE------DLHMDFKCVVHNTLSFQ  325 (339)
T ss_dssp             SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCC------SCCCCCEEEEEETTEEE
T ss_pred             CeecccccccccceecceEEecccCceEEEEEEEEEEechh------hcCccEEEEEEeccCce
Confidence            7665321        0112233455      7999888765      77 99999999999987

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.18  E-value=1.5e-10  Score=84.06  Aligned_cols=61  Identities=11%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCc---EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGS---LMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~Gs---L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|+|.|+|+|++ ++..+..   ......+|.   +.|..+..+      |.|.|+|.|+|.+|..
T Consensus       120 ~v~l~C~~~g~P~p~v~W~~-~~~~~~~---~~~~~~~~~~~~~~i~~v~~~------d~G~Y~C~a~N~~g~~  183 (202)
T 3bp6_B          120 EVQLTCQARGYPLAEVSWQN-VSVPANT---SHIRTPEGLYQVTSVLRLKPQ------PSRNFSCMFWNAHMKE  183 (202)
T ss_dssp             CEEEEEEEEEBSCCEEEETT-CCSCCEE---EEEECTTSCEEEEEEEEECCC------TTCCEEEEEEETTTTE
T ss_pred             eEEEEEEccccCCceEEEEe-CCCCccC---ceeeCCCCCEEEEEEEEEEcC------CCCEEEEEEEcCCccc
Confidence            38999999999999999964 6554421   122334443   334455433      7999999999999987

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.17  E-value=1.8e-10  Score=87.11  Aligned_cols=128  Identities=18%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             eeceee-eecCceeEeeccccCcccCCceeeeE--EEecc-----------CCCCCCCEEEEcCCC-CC--ccCeEEEee
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRPLGYLVGNI--VYSSR-----------SENEHYPFRIKSAPG-GN--RTRGLELTR   66 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~-----------~~~~~~P~~i~~p~~-~~--~~g~~L~C~   66 (145)
                      ++|..+ ..|+++|+|...+..+... ..++..  +....           .....+|.+...|.. ..  +..+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~-~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  161 (256)
T 3umt_A           83 LELRSLTSEDSAVYYCARDDRYPAWF-AYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR  161 (256)
T ss_dssp             EEECSCCGGGCEEEEEEECCSTTCCS-CEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEccCCCccc-cEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE
Confidence            344444 6799999998866522111 111111  11110           011136777777765 22  333999999


Q ss_pred             EeccCCCEEEEEccC-CeEee---c--------ccCceEEe-eC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          67 QTRYEPSQLGWRFSN-NTVIA---Y--------VKDLRIAL-SN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        67 a~G~P~P~i~W~~~d-g~~i~---~--------~~~~~~~~-~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.|.|.|++.+ |..+.   .        .+...... ..  .+|.|.++..+      |+|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~~~~f  235 (256)
T 3umt_A          162 ASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESE------DFVDYYCLQYASSPPTF  235 (256)
T ss_dssp             ESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG------GCSEEEEEECSSSSCEE
T ss_pred             EecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChh------HCEEEEEEEeeCCCcEE
Confidence            999999999998732 22221   0        01111111 12  25999988765      89999999999866554


Q ss_pred             E--EEEEEE
Q psy5697         132 S--RFVHVK  138 (145)
Q Consensus       132 s--~~v~v~  138 (145)
                      +  ..+.|.
T Consensus       236 g~gt~L~V~  244 (256)
T 3umt_A          236 GGGTKLEIK  244 (256)
T ss_dssp             CCCEEEEEC
T ss_pred             CCCEEEEEE
Confidence            3  355554

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.17  E-value=5.5e-10  Score=83.03  Aligned_cols=117  Identities=14%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEE-eccCCCCCCCEEEEcCCCCC--ccCeEEEeeEecc-CC--CEEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVY-SSRSENEHYPFRIKSAPGGN--RTRGLELTRQTRY-EP--SQLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a~G~-P~--P~i~W~~~dg~   83 (145)
                      ..|+++|.|.........+  .++..+. ........+|.+...+....  +..+.|.|.+.|. |.  |+|+|+ +||.
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~--~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~-~~~~  164 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNA--YWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWG-KSGK  164 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEE--EECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEES-CCCS
T ss_pred             hhhCEEEEEEEeccccccc--eecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEe-cCCE
Confidence            6788888887754322110  1111110 01111234676665553222  2338999999998 76  799996 5766


Q ss_pred             EeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy5697          84 VIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus        84 ~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                      .+...........+|      .|.|.+....      |.|.|+|.|+|..|++....+
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~ytC~v~n~~~~~~~~~~  216 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECP------EGESVKCSVQHDSNPVQELDV  216 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSC------TTCEEEEEEEETTSCCEEEEE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcC------CCCeEEEEEEcCCCceEcCCC
Confidence            542111111222344      3666544322      799999999999999865544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.17  E-value=1.2e-11  Score=96.86  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=51.6

Q ss_pred             eecCceeEeeccccC-ccc---CCceeeeEEEeccCCCCCCCEEEEcCCC---CCccC--eEEEeeEe----ccCCCEEE
Q psy5697          10 LADADTYIIADRSLF-PRP---LGYLVGNIVYSSRSENEHYPFRIKSAPG---GNRTR--GLELTRQT----RYEPSQLG   76 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~-p~~---~~~~~~~~~~~~~~~~~~~P~~i~~p~~---~~~~g--~~L~C~a~----G~P~P~i~   76 (145)
                      ..|++.|.|...+.. ...   ...+.  ..+........+|.++..+..   ....|  +.|.|.+.    |+|.|.|+
T Consensus       186 ~~d~G~Y~C~a~n~~~g~~~~~~~~~~--l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~  263 (349)
T 4dep_C          186 ISNNGNYTCVVTYPENGRTFHLTRTLT--VKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW  263 (349)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEE--EEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEE
T ss_pred             ecCCcEEEEEEEEeeCCEEEEEEEEEE--EEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEE
Confidence            567788888775532 211   11111  011111112336777666543   22233  89999999    78999999


Q ss_pred             EEccCCeEeecc-cCceE-----------EeeCCcEEEcCCCCCCCCCCCCC-eEEEEEEEcCCCceE-EEEEEEE
Q psy5697          77 WRFSNNTVIAYV-KDLRI-----------ALSNGSLMFPPFPETGFRPDVHS-TVYRCRASNEAGVIL-SRFVHVK  138 (145)
Q Consensus        77 W~~~dg~~i~~~-~~~~~-----------~~~~GsL~i~~~~~~~~~~~~d~-G~Y~C~A~N~~G~~~-s~~v~v~  138 (145)
                      |+ +||..+... .....           ....++|.|.++..+      |+ |.|+|.|+|.+|... +..+.|.
T Consensus       264 W~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          264 WT-IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE------DLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             EE-SSCC--------CCCCEEEECCTTCCEEEEECC-------------------CEEEEECSSCEEEEECC----
T ss_pred             EE-ECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHH------HcCCcEEEEEEcCCCcEEEEEEEeee
Confidence            98 577776541 11110           011235888877655      78 999999999999973 3355554

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.17  E-value=1.5e-10  Score=88.32  Aligned_cols=120  Identities=10%  Similarity=0.029  Sum_probs=68.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCcc--CeEEEeeEeccCCC-----EEEEEcc-
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRT--RGLELTRQTRYEPS-----QLGWRFS-   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P-----~i~W~~~-   80 (145)
                      ..|++.|.|...+..+......++..+   ...+..+|.++..|.. ....  .+.|.|.+.|.|+|     .|+|++. 
T Consensus        88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~---~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A           88 SEDSAVYYCARYDYYGSSYFDYWGQGT---TVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             GGGCEEEEEEECCTTSSSSCSEECCCE---EEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             hhhCEEEEEEEeeccCccceeEEcCce---eeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence            578889988886653320001111101   0111234566666655 2233  39999999999976     9999874 


Q ss_pred             CCeEeec------------ccCceEEe--eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE--EEEEEE
Q psy5697          81 NNTVIAY------------VKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS--RFVHVK  138 (145)
Q Consensus        81 dg~~i~~------------~~~~~~~~--~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s--~~v~v~  138 (145)
                      +|..+..            ..+.....  ..++|.|.++..+      |+|.|.|.|.|..+...+  ..+.|.
T Consensus       165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          165 PGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE------DLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             TTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChH------HCEEEEEEEccCCceEECCCEEEEEE
Confidence            4543310            01111111  1237999888765      899999999997554433  244444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.16  E-value=1.8e-10  Score=95.26  Aligned_cols=118  Identities=14%  Similarity=0.007  Sum_probs=72.1

Q ss_pred             eecCc-eeEeeccccCcccCC-ceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEeccCCCE-EEEEccCCe
Q psy5697          10 LADAD-TYIIADRSLFPRPLG-YLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTRYEPSQ-LGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~-~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G~P~P~-i~W~~~dg~   83 (145)
                      ..|++ .|.|...+......+ .+.    .........+|.|...|.+. .  +..+.|.|.+.|.|.|. |+|++ +|.
T Consensus       177 ~~d~G~~Y~C~a~n~~~~~~s~~~~----l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~-~~~  251 (524)
T 2ec8_A          177 RAYHRLCLHCSVDQEGKSVLSEKFI----LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR-ENS  251 (524)
T ss_dssp             GGGTTCEEEEEEC----CCCCCCEE----CCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEE-TTC
T ss_pred             hhhCCceEEEEEEECCceEEEEEEE----EEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEe-CCC
Confidence            56777 888877543222111 111    00111224678888777662 2  23399999999999997 99985 555


Q ss_pred             Ee--ecccCce-----EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy5697          84 VI--AYVKDLR-----IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK  138 (145)
Q Consensus        84 ~i--~~~~~~~-----~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v~  138 (145)
                      .+  .......     ....+++|.|.++..+      |+|.|+|.|+|..|... +..+.|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~  308 (524)
T 2ec8_A          252 QTKLQEKYNSWHHGDFNYERQATLTISSARVN------DSGVFMCYANNTFGSANVTTTLEVV  308 (524)
T ss_dssp             SCCCCEEEEEEECSSSCEEEEEEEEESSCCTT------TCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCccccccccccccCCccceEEEEEECCCCHH------HCEEEEEEEEecCCceEEEEEEEEe
Confidence            52  2111111     1234568999888655      89999999999999974 3345554

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.16  E-value=1.3e-10  Score=87.89  Aligned_cols=133  Identities=15%  Similarity=0.108  Sum_probs=73.6

Q ss_pred             eeceee-eecCceeEeeccccCcccCCceeeeEEEecc---------CCCCCCCEEEEcCCC-CCc--cCeEEEeeEecc
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSR---------SENEHYPFRIKSAPG-GNR--TRGLELTRQTRY   70 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------~~~~~~P~~i~~p~~-~~~--~g~~L~C~a~G~   70 (145)
                      ++|..+ ..|+++|.|...+......+... ...+...         .....+|.+...|.. ...  ..+.|.|.+.|.
T Consensus        82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  160 (253)
T 3uzq_A           82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGT-LVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASEN  160 (253)
T ss_dssp             EEECSCCGGGCEEEEEEECSSSCCEECCCE-EEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEeCCCCcccCEEEEEEEeeCCccEECCCc-EEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCc
Confidence            444444 68999999988663222111101 1011100         012235677777765 223  339999999999


Q ss_pred             CCC----EEEEEccC-CeEee---c--------ccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          71 EPS----QLGWRFSN-NTVIA---Y--------VKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        71 P~P----~i~W~~~d-g~~i~---~--------~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      |.|    .|.|++.+ |....   .        .+..... ...  .+|.|.++..+      |+|.|.|.|.|..+...
T Consensus       161 ~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~n~~~~~f  234 (253)
T 3uzq_A          161 VDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEAD------DVATYFCQRSNEVPWTF  234 (253)
T ss_dssp             CEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEECSSSSCCB
T ss_pred             cccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHH------HCEEEEEEEccCCCcEE
Confidence            988    99998632 22211   0        0111111 122  26999988765      89999999999877664


Q ss_pred             E--EEEEEEeccCC
Q psy5697         132 S--RFVHVKADSRI  143 (145)
Q Consensus       132 s--~~v~v~~~~~~  143 (145)
                      .  ..+.|....+.
T Consensus       235 g~gt~l~v~~~~~~  248 (253)
T 3uzq_A          235 GGGTKLEIKRPLEH  248 (253)
T ss_dssp             CCCEEEEECCC---
T ss_pred             CCCEEEEEcCCCCC
Confidence            3  45666544443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.16  E-value=4.5e-11  Score=87.08  Aligned_cols=55  Identities=11%  Similarity=0.241  Sum_probs=45.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+   |.|+|+|+ +||..+.....     .+++|.|.++..+      |+|.|+|.|+|..|+.
T Consensus       125 v~l~C~~---p~p~i~W~-k~g~~i~~~~~-----~~~~L~i~~v~~~------D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          125 VLLTCGL---TDKTIKWL-KDGSIISPLNA-----TKNTWNLGNNAKD------PRGTYQCQGAKETSNP  179 (186)
T ss_dssp             EEEECSS---SCSCEEEE-ETTEECCCSSC-----CSSCCEEEETTSC------CEEEEEEEESSCEEEE
T ss_pred             EEEEeeC---CCCeEEEE-ECCEECcccCC-----CcceEEECCCCcC------cCEEEEEEEEcCcCCc
Confidence            8999998   99999997 58888753221     4678999888765      8999999999999986

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.16  E-value=2.4e-10  Score=84.44  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             eecCceeEeeccccC-cccCCceeee--EEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEecc-CCC-EEEEEccC
Q psy5697          10 LADADTYIIADRSLF-PRPLGYLVGN--IVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRY-EPS-QLGWRFSN   81 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~-p~~~~~~~~~--~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~-P~P-~i~W~~~d   81 (145)
                      ..|+++|.|...... |... ..++.  .+.. ......+|.+...++. ....|  +.|.|.+.|. |.| +|+|+ +|
T Consensus        90 ~~D~G~Y~C~~~~~~~~~~~-~~~~~~~~l~V-~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-~~  166 (222)
T 1q9r_B           90 AEDSATYYCARDHDGYYERF-SYWGQGTLVTV-SAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN-SG  166 (222)
T ss_dssp             GGGCEEEEEEECCCSSCCSC-CCBCCCEEEEE-CSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEG-GG
T ss_pred             cccCeEEEEEEeccCCcccc-eEeCCceEEEe-ccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEe-cC
Confidence            578889999886532 1100 01111  1111 1122346766554433 22233  8999999996 999 99996 57


Q ss_pred             CeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          82 NTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        82 g~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      |..+.... ......+|      +|.|.+...+      | |.|+|.|+|.+|..
T Consensus       167 g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~------d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          167 SLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWP------S-ETVTCNVAHPASST  213 (222)
T ss_dssp             TBCTTEEE-EEEEEETTEEEEEEEEEEETTTTT------T-SCCEEEEEEGGGTE
T ss_pred             CeEcceEe-ccccccCCcEEEEEEEEECchhcC------C-CeEEEEEEccCCCC
Confidence            76543211 11111233      5777655432      7 99999999999975

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.16  E-value=3.3e-10  Score=83.27  Aligned_cols=70  Identities=11%  Similarity=-0.015  Sum_probs=48.9

Q ss_pred             CCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          46 YPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        46 ~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +|.+...+.     .+.|.|.+.|.|.|+|+|++ ||+.+. .       .+.+|.+.. ..      .|+|.|+|+|+|
T Consensus       108 ~P~i~~~~~-----~v~L~C~~~~~p~~~~~W~~-~g~~l~-~-------~~~~i~~~~-~~------~d~G~Y~C~a~N  166 (182)
T 1hnf_A          108 KPKISWTCI-----NTTLTCEVMNGTDPELNLYQ-DGKHLK-L-------SQRVITHKW-TT------SLSAKFKCTAGN  166 (182)
T ss_dssp             CCEEEEETT-----TTEEEEECSSCSSCEEEEEE-SSCEEE-E-------ESSCEEEEC-CS------CEEEEEEEEEEC
T ss_pred             CCEEEEccC-----cEEEEeEccCCCCCEEEEEE-CCEECC-C-------CCcEEEEec-cc------CCCcEEEEEEEe
Confidence            466555432     38999999999999999984 777761 1       233444432 11      289999999999


Q ss_pred             CCCceEEEEEE
Q psy5697         126 EAGVILSRFVH  136 (145)
Q Consensus       126 ~~G~~~s~~v~  136 (145)
                      .+|...+..+.
T Consensus       167 ~~~~~~s~~~~  177 (182)
T 1hnf_A          167 KVSKESSVEPV  177 (182)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CCCCcEEccee
Confidence            99998655433

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.8e-11  Score=79.82  Aligned_cols=66  Identities=14%  Similarity=0.227  Sum_probs=48.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      +.|.|.+. .|.|.|+|+ +||..+....+. .+..+|   +|.|.++..+      |+|.|+|.|.|..   .+..+.|
T Consensus        29 v~L~C~~~-~p~~~v~W~-k~g~~~~~~~~~-~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~~~~---~~~~l~V   96 (102)
T 2eo1_A           29 ATLSCEVA-QAQTEVTWY-KDGKKLSSSSKV-RVEAVGCTRRLVVQQAGQA------EAGEYSCEAGGQQ---LSFRLQV   96 (102)
T ss_dssp             EEECCBCS-CSSSCCEEE-ETTEECCCCSSE-EEEEETTEEEEEETTCCTT------TCSCEEEEETTEE---CCEEEEE
T ss_pred             EEEEEEec-CCCCceEEE-ECCEECCCCCCE-EEEEcCCEEEEEECCCCcc------cCEEEEEEcCCCc---EEEEEEE
Confidence            89999998 899999998 588887654433 333343   7999888665      8999999997643   2345555


Q ss_pred             E
Q psy5697         138 K  138 (145)
Q Consensus       138 ~  138 (145)
                      .
T Consensus        97 ~   97 (102)
T 2eo1_A           97 A   97 (102)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=86.87  Aligned_cols=82  Identities=10%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             CCEEEEcCCC-CCc--cCeEEEeeEeccCC-CEEEEEccC-CeEeec-----------ccCceEE-eeCC--cEEEcCCC
Q psy5697          46 YPFRIKSAPG-GNR--TRGLELTRQTRYEP-SQLGWRFSN-NTVIAY-----------VKDLRIA-LSNG--SLMFPPFP  106 (145)
Q Consensus        46 ~P~~i~~p~~-~~~--~g~~L~C~a~G~P~-P~i~W~~~d-g~~i~~-----------~~~~~~~-~~~G--sL~i~~~~  106 (145)
                      +|.++..|.. ...  ..+.|.|.+.|.|. |.|.|++.. |.....           ....... ..++  +|.|.++.
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            5677777776 223  33999999999997 999998632 222110           1111111 2222  59998887


Q ss_pred             CCCCCCCCCCeEEEEEEEcCCCceEEE
Q psy5697         107 ETGFRPDVHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus       107 ~~~~~~~~d~G~Y~C~A~N~~G~~~s~  133 (145)
                      .+      |+|.|.|.|.|..+...+.
T Consensus       229 ~~------DsG~Y~C~~~~~~~~~~g~  249 (256)
T 3juy_B          229 PE------DFALYYCQVYGASSYTFGQ  249 (256)
T ss_dssp             GG------GCSEEEEEECCSSCCEECC
T ss_pred             Hh------HCEEEEEEEeeCCCceEcC
Confidence            65      8999999999976655433

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.16  E-value=8.6e-11  Score=85.40  Aligned_cols=73  Identities=19%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             CeEEEeeEeccCC-----CEEEEEccCCeEeecccCceEEee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTRYEP-----SQLGWRFSNNTVIAYVKDLRIALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G~P~-----P~i~W~~~dg~~i~~~~~~~~~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+.|.|.+.|.|.     |.|+|++.++....... ......      +++|.|.++..+      |+|.|+|.|.|..|
T Consensus        19 ~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~-r~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~~   91 (202)
T 3bp6_B           19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSE-RATLLEEQLPLGKALFHIPSVQVR------DSGQYRCLVICGAA   91 (202)
T ss_dssp             CEEEEEEECTTC---CTTEEEEEEECC--CCCBCS-SCEECGGGGGGTEEEEEECSCCGG------GCEEEEEEEEETTE
T ss_pred             cEEEEEEecCCCCCCccceEEEEEcCCCcccccCC-ceEEeeccccCCeeEEEECCCCHH------HCcEEEEEEEeCCC
Confidence            3999999999997     99999864544332222 223322      258999988765      89999999999999


Q ss_pred             ce-EEEEEEEEe
Q psy5697         129 VI-LSRFVHVKA  139 (145)
Q Consensus       129 ~~-~s~~v~v~~  139 (145)
                      .. ....+.|..
T Consensus        92 ~~~~~~~l~V~~  103 (202)
T 3bp6_B           92 WDYKYLTVKVKA  103 (202)
T ss_dssp             EEEEEEEEEEEB
T ss_pred             cceEEEEEEecC
Confidence            76 333444444

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.16  E-value=1.6e-10  Score=84.48  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC--EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS--QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P--~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+......+... . + ........+|.+...++. ..  +..+.|.|.+.|.|+|  +|+|++ ||..
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~-~-l-~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~  157 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGT-K-L-TVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKV-DGTP  157 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCE-E-E-EECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             ccCCEEEEEEEecCchhhcCCCe-E-E-EEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEE-CCEe
Confidence            57888888887654322111000 0 1 111122357877665554 11  2238999999996554  899985 8888


Q ss_pred             eecccC--ceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          85 IAYVKD--LRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        85 i~~~~~--~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.....  ......+|      .|.|.+...+      |+|.|+|.|+|..+.
T Consensus       158 l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          158 VTAGMETTQPSKQSNNKYMASSYLTLTARAWE------RHSSYSCQVTHEGHS  204 (212)
T ss_dssp             ECTTEEECCCEECTTSCEEEEEEEEEEHHHHT------TCCEEEEEEEETTEE
T ss_pred             CCCCeecCCceeCCCCCEEEEEEEEEcHHHcc------CCCcEEEEEEeCCcc
Confidence            753211  01122233      4677655433      799999999998765

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.15  E-value=1.7e-10  Score=84.72  Aligned_cols=111  Identities=11%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEec-cCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTR-YEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G-~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+....   ..++..+.-.......+|.+...++. ..  +..+.|.|.+.| .|+| +|+|++ ||..
T Consensus        81 ~~D~G~Y~C~~~~~~~~---~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~  156 (216)
T 2xzc_L           81 TGDEADYYCGTWDSSLN---PVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV-DNAL  156 (216)
T ss_dssp             GGGCEEEEEEEECTTSC---EEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             cccCEEEEEEEEeCCCc---ceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEE-CCee
Confidence            57888998888654330   01111010001222357877665543 11  223899999999 5555 999984 8887


Q ss_pred             eecc-cCce--EEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYV-KDLR--IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~-~~~~--~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +... ....  ....+|      +|.|.+...+      |+|.|+|.|+|.....
T Consensus       157 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          157 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE------KHKVYACEVTHQGLSS  205 (216)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHT------TCCEEEEEEECTTCSS
T ss_pred             cCCCeeEecCcccCCCCCEEEEEEEEECHHHhC------CCCcEEEEEEcCCCCC
Confidence            6532 0000  111233      5777665433      7999999999997653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.15  E-value=5.7e-10  Score=81.63  Aligned_cols=105  Identities=13%  Similarity=0.036  Sum_probs=59.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC-cc-CeEEEeeEecc-CCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN-RT-RGLELTRQTRY-EPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~-~~-g~~L~C~a~G~-P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|...+........+. -.|+    .....|.+...+.... .. .+.|.|.+.|. |.|+|+|++ ||..+.
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~-L~V~----~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~-~g~~l~  152 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYT-LRIL----RQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEA-LGNTLS  152 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEE-EEEE----CCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEE-TTEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEE-EEEE----ccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEe-CCEEcC
Confidence            56777887776443222111111 0011    1112355555543211 22 38999999995 589999985 776642


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                               .++.|.|....     .+.|+|.|+|.|+|.+|.. +..+
T Consensus       153 ---------~~~~l~i~~~~-----~~~d~G~Y~C~a~N~~g~~-s~~~  186 (193)
T 2if7_A          153 ---------SQPNLTVSWDP-----RISSEQDYTCIAENAVSNL-SFSV  186 (193)
T ss_dssp             ---------SSSEEEEEECT-----TTCSCCEEEEEEEETTEEE-EEEE
T ss_pred             ---------CCCeEEEEecc-----CcCCCCcEEEEEECCCCcc-cccc
Confidence                     23356664221     2237999999999999987 4443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=2.1e-11  Score=94.73  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=53.0

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      +.|.|.+.|+|.|.|+|+ ++|..+......   .....+++|.|.++..+      |+|.|+|.|.|..|.. .+..+.
T Consensus       141 v~l~C~~~g~p~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~n~~g~~~~~~~l~  213 (334)
T 1ry7_B          141 VRFRCPAAGNPTPSISWL-KNGREFRGEHRIGGIKLRHQQWSLVMESVVPS------DRGNYTCVVENKFGSIRQTYTLD  213 (334)
T ss_dssp             EEEECCCCCSSCCEEECC-BTTBCCCTTSSTTCCCCCTTTTEEEECSCCGG------GCCCEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEccCCCCCeEEEE-ECCEECcccccccceecccceEEEEECCCCcc------cCEEEEEEEEeCCCCEEEEEEEE
Confidence            899999999999999997 577776543221   11223458999888665      8999999999999986 333555


Q ss_pred             EE
Q psy5697         137 VK  138 (145)
Q Consensus       137 v~  138 (145)
                      |.
T Consensus       214 V~  215 (334)
T 1ry7_B          214 VL  215 (334)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.15  E-value=1.8e-10  Score=86.34  Aligned_cols=120  Identities=15%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             eeceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeEec-cCCC-EEEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQTR-YEPS-QLGWR   78 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a~G-~P~P-~i~W~   78 (145)
                      +.|..+ ..|++.|.|.........    ...    .......+|.+...+....  ...+.|.|.+.| +|.| +|+|+
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~----~~~----~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~  155 (248)
T 3pv7_A           84 LRLPGIQLEEAGEYRCEVVVTPLKA----QGT----VQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWE  155 (248)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE----EEE----EEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEE
T ss_pred             EEeCCCCHHHCeEEEEEEEeCCccc----eeE----EEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEE
Confidence            344444 678899999864422111    111    1112223676666655422  223789999999 8999 99998


Q ss_pred             ccCCeEeecc----cC----ceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          79 FSNNTVIAYV----KD----LRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        79 ~~dg~~i~~~----~~----~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      + ||+.+...    ..    ......+|      +|.|.+...      .|.|.|+|.|+|..|.. .+..+.|.
T Consensus       156 k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~------~d~g~YtC~a~n~~~~~~~~~~v~l~  223 (248)
T 3pv7_A          156 K-QTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQE------DPGTVYQCVVRHASLHTPLRSNFTLT  223 (248)
T ss_dssp             E-ECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CC------CTTCEEEEEEECTTCSSCEEEEECC-
T ss_pred             E-CCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccc------cCCCEEEEEEECCCCCCCcEEEEEEE
Confidence            5 66432110    00    01112233      355544322      27899999999999874 55555554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.14  E-value=1.6e-10  Score=83.49  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeE---------eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTV---------IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~---------i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|.|.|.|+|++.+...         +......+....+++|.|.++..+      |+|.|+|.|.|..|..
T Consensus        21 ~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~------d~G~Y~C~~~~~~g~~   94 (209)
T 1nbq_A           21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNS   94 (209)
T ss_dssp             CCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTT------SCSEEEEEEEETTSSC
T ss_pred             CEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHH------HCcEEEEEEecCCCCc
Confidence            3899999999999999998643321         111111123334589999988765      8999999999998743


Q ss_pred             -E--EEEEEEEeccCC
Q psy5697         131 -L--SRFVHVKADSRI  143 (145)
Q Consensus       131 -~--s~~v~v~~~~~~  143 (145)
                       .  +..+.|...+.+
T Consensus        95 ~~~~~~~l~V~~~p~~  110 (209)
T 1nbq_A           95 YGEVKVKLIVLVPPSK  110 (209)
T ss_dssp             EECCEEECCEEBCCCC
T ss_pred             cceEEEEEEEecCCcC
Confidence             2  334555544444

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.14  E-value=3.2e-11  Score=94.08  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             CCCCCEEEEcCCC-CCc--cCeEEEeeEe-------ccCCCEEEEEccCCeE--eecccCceEEeeCCcEEEcCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNR--TRGLELTRQT-------RYEPSQLGWRFSNNTV--IAYVKDLRIALSNGSLMFPPFPETGF  110 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~--~g~~L~C~a~-------G~P~P~i~W~~~dg~~--i~~~~~~~~~~~~GsL~i~~~~~~~~  110 (145)
                      .+..|.|...|.+ .+.  ..+.|.|.+.       |.|.|.|+|++ +|..  +......+....+++|.|.++..+  
T Consensus        15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~--   91 (339)
T 3o4o_C           15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK-NDSARTVPGEEETRMWAQDGALWLLPALQE--   91 (339)
T ss_dssp             ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEE-SSCCSCCSCCSSSCEEEETTEEEESSBCTT--
T ss_pred             chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEE-CCCCcccCccccccEEeeCCeEEECCCCcc--
Confidence            3456899999887 233  3399999998       99999999985 6665  332223345577899999988765  


Q ss_pred             CCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         111 RPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                          |+|.|+|.|.|..|.. .+..+.|..
T Consensus        92 ----D~G~Y~C~~~n~~g~~~~~~~l~V~~  117 (339)
T 3o4o_C           92 ----DSGTYVCTTRNASYCDKMSIELRVFE  117 (339)
T ss_dssp             ----CCEEEECCEEETTEEEEEEEEEEEEC
T ss_pred             ----cCEEEEEEEECCcceEEEEEEEEEEc
Confidence                8999999999999976 444555553

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.14  E-value=2.7e-11  Score=98.06  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=43.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|+|+|.|+|++ ||..+         ..+|++.  .+..+      |+|.|+|.|+|.+|+. .+..+.|.
T Consensus       388 ~~l~C~~~g~P~p~i~W~~-~g~~~---------~~~g~~~--~v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          388 QTPMCQAWGNPLPELKCLK-DGTFP---------LPIGESV--TVTRD------LEGTYLCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             ECCCCCCEEESCCEEEEEE-TTTEE---------CCTTSCE--ECCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEecccCCCCcEEEEE-CCccc---------CCCCCeE--eEehh------hCeEEEEEEEeCCCceeEEEEEEEE
Confidence            8999999999999999985 65432         2344433  23322      8999999999999998 34455554

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.14  E-value=4.5e-11  Score=91.28  Aligned_cols=70  Identities=11%  Similarity=0.052  Sum_probs=53.3

Q ss_pred             CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe-EEEEEEEcCCCceEEEEEEE
Q psy5697          60 RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        60 g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G-~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      .+.|.|.+.| |. |.|+|+++||..+.... ......+++|.|.++..+      |+| .|+|.|.|..|...+..+.+
T Consensus       108 ~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~-~~~~~~~~~L~i~~v~~~------d~G~~Y~C~a~n~~~~~~s~~~~l  179 (290)
T 2o26_X          108 DALVRCPLTD-PQVSQYSLIECDGKSLPTDL-TFVPNPKAGITIKNVKRA------YHRLCVRCAAQRDGTWLHSDKFTL  179 (290)
T ss_dssp             CEEECCCBSC-CSCEEEEEEETTSCCCCTTC-EEEEETTTEEEEESCCGG------GTTCEEEEEEEETTEEEECCCEEE
T ss_pred             eEEEeCcCCC-CCCceEEEEeCCCcCCCCCC-ceeeCCCCCEEEecccHH------HCCCEEEEEEEECCceEEeEEEEE
Confidence            3999999997 88 99999767888875432 224445679999988665      899 99999999977766543333

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.13  E-value=1.7e-11  Score=89.83  Aligned_cols=79  Identities=10%  Similarity=0.146  Sum_probs=52.0

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEecc-CC-CEEEEEccCCeEeecccCceEE-------eeCCcEEEcCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKDLRIA-------LSNGSLMFPPFPETGFRP  112 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~~~~~-------~~~GsL~i~~~~~~~~~~  112 (145)
                      .+|.+...++. ....  .+.|.|.+.|. |+ |.|+|++ ||..+.........       ...++|.|.++..+    
T Consensus       112 ~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~----  186 (212)
T 1nfd_E          112 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKA-NGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWK----  186 (212)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEE-TTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHH----
T ss_pred             CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEE-CCeEcCCCeecCCceecCCCceEEEEEEEchhhcC----
Confidence            56776665544 2222  38999999998 55 7999984 88887532111001       11245777766544    


Q ss_pred             CCCCeEEEEEEEcCCCce
Q psy5697         113 DVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~  130 (145)
                        |+|.|+|.|+|..+..
T Consensus       187 --d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          187 --SHNRVSCQVTHEGETV  202 (212)
T ss_dssp             --TCSCEEEEEECTTTTC
T ss_pred             --CCCeEEEEEEeCCceE
Confidence              7999999999998864

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.13  E-value=1.9e-10  Score=84.03  Aligned_cols=109  Identities=11%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC-cc-CeEEEeeEeccCCC--EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN-RT-RGLELTRQTRYEPS--QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~-~~-g~~L~C~a~G~P~P--~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.....    ++..+.-.......+|.+...++. .. .. .+.|.|.+.|.|+|  +|+|+ +||..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~----~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~-k~g~~  154 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWT----FGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWK-VDGSE  154 (213)
T ss_dssp             GGGCSEEEEEECSSSSCE----ECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEE-ETTEE
T ss_pred             cccCEEEEEecccCCceE----EcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEE-ECCcc
Confidence            678999999886543221    111111111233567877776665 11 22 29999999997754  99997 48888


Q ss_pred             eeccc-Cc--eEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          85 IAYVK-DL--RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        85 i~~~~-~~--~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.... ..  .....+|      +|.|.+...+      |.|.|+|.|+|+...
T Consensus       155 l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~------d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          155 KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYE------RHNLYTCEVTHKTST  202 (213)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEEETTCS
T ss_pred             cCCceEeccCceeCCCCcEEEEEEEEeCHHHhc------cCCeEEEEEEecccC
Confidence            75321 00  0112334      3555443222      699999999999654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.13  E-value=8.3e-11  Score=88.14  Aligned_cols=87  Identities=9%  Similarity=-0.030  Sum_probs=57.2

Q ss_pred             CCCCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCce-EEeeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          44 EHYPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLR-IALSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        44 ~~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~-~~~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      ..+|.|...|...+  +..++|.|.+.| |.|.|+|+| ||..+....... ....++  +|.|.++..+      |+|.
T Consensus         7 ~~~P~i~~~p~~~v~~G~~vtL~C~~~~-~~~~~~W~k-~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~   78 (218)
T 1uct_A            7 FPMPFISAKSSPVIPLDGSVKIQCQAIR-EAYLTQLMI-IKNSTYREIGRRLKFWNETDPEFVIDHMDAN------KAGR   78 (218)
T ss_dssp             SCCCCEEESSCSEEETTCCEEEEECCCT-TCSEEEEEE-EETTEEEECSEECC----CCCEEEECSCCGG------GCEE
T ss_pred             CCCCEEEecCCCccCCCCCEEEEEEcCC-CCCEEEEEE-CCCcccccccccCCCCcceeeEEEEcccccc------cCEE
Confidence            45678877776533  233999999998 789999985 665543221111 112345  8999988765      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|.|.|..|.. .+..+.|.
T Consensus        79 Y~C~a~n~~~~~~~s~~~~l~   99 (218)
T 1uct_A           79 YQCQYRIGHYRFRYSDTLELV   99 (218)
T ss_dssp             EEEEEEETTTEEEECCCEEEE
T ss_pred             EEEEEEcCCCceeecCCEEEE
Confidence            999999998743 44434433

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.13  E-value=4.7e-10  Score=87.03  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             eeceee-eecCceeEeecccc-----CcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeEeccCCCEE
Q psy5697           4 FHISTL-LADADTYIIADRSL-----FPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQTRYEPSQL   75 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i   75 (145)
                      +.|..+ ..|++.|.|.....     +-.....+.  ..+   .....+|.+...|....  +..+.|.|.+.+ |++.+
T Consensus        76 L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~--l~V---~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~  149 (316)
T 3vh8_G           76 FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVV--IMV---TGNHRKPSLLAHPGPLVKSGERVILQCWSDI-MFEHF  149 (316)
T ss_dssp             EEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEE--EEE---ECSSCCCEEEEESCSEEETTCCEEEEEEESS-CCSEE
T ss_pred             EEECCCCcccCeEEEEEEEcCCCCcceecCCCcEE--EEE---ecCCCCCeEEecCCCccCCCCeEEEEEcCCC-CCcEE
Confidence            344444 67889999975421     111111122  011   11234577777666533  233999999955 77899


Q ss_pred             EEEccCCeEeecccCceE-E--eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          76 GWRFSNNTVIAYVKDLRI-A--LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        76 ~W~~~dg~~i~~~~~~~~-~--~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .|++ +|..+........ .  ..+++|.|.++..+      |+|.|+|.|.|..|.
T Consensus       150 ~w~k-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          150 FLHK-EGISKDPSRLVGQIHDGVSKANFSIGPMMLA------LAGTYRCYGSVTHTP  199 (316)
T ss_dssp             EEEE-TTCCSCCEEEECEEETTEEEEEEEECSCCGG------GCEEEEEEEECTTCT
T ss_pred             EEEE-CCCccccceeeeeecCCCceEEEEECCCChh------hCceEEEEEecCCCC
Confidence            9975 6655432111111 1  23568999888765      899999999999985

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.13  E-value=1.9e-10  Score=86.74  Aligned_cols=72  Identities=14%  Similarity=0.189  Sum_probs=49.7

Q ss_pred             CeEEEeeE---eccCCCEEEEEccCCeEeec--------------------ccCceEE-----eeCCcEEEcCCCCCCCC
Q psy5697          60 RGLELTRQ---TRYEPSQLGWRFSNNTVIAY--------------------VKDLRIA-----LSNGSLMFPPFPETGFR  111 (145)
Q Consensus        60 g~~L~C~a---~G~P~P~i~W~~~dg~~i~~--------------------~~~~~~~-----~~~GsL~i~~~~~~~~~  111 (145)
                      .+.|.|.+   .|.|.|.|+|++.++.....                    .......     ..+++|.|.++..+   
T Consensus       135 ~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~---  211 (268)
T 3mj6_A          135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKES---  211 (268)
T ss_dssp             CEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGG---
T ss_pred             cEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChh---
Confidence            38999999   78899999998755432110                    0000111     23568999988765   


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697         112 PDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                         |+|.|+|.|.|..|.. .+..+.|
T Consensus       212 ---D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          212 ---DQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             ---GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ---hCeEEEEEEEcCCceEEEEEEEEE
Confidence               8999999999999986 3445555

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.13  E-value=4.1e-10  Score=93.06  Aligned_cols=109  Identities=11%  Similarity=0.075  Sum_probs=64.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCcc--CeEEEeeEecc-CCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRT--RGLELTRQTRY-EPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~-P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+..-.....+.   . ........+|.+...++. ....  .+.|.|.+.|. |.| +|+|++ ||..
T Consensus       187 ~~d~G~Y~C~a~n~~~~~~~~~~---~-~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k-~g~~  261 (523)
T 2rcj_C          187 WKSHRSYSCQVTHEGSTVEKTVA---P-TECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNS-GALT  261 (523)
T ss_pred             cCCCceEEEEEEecCccccccee---e-eecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEec-CCcc
Confidence            35777888877554322111111   0 011223456665533332 2223  39999999997 888 899974 7765


Q ss_pred             eecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +...........+|      +|.|.++..+      | |.|+|.|+|..|..
T Consensus       262 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          262 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNT  306 (523)
T ss_pred             cceEeCCcEecCCCcEEEEEEEEechhhcC------C-ceEEEEEEeCCCCc
Confidence            43211111222334      7888776543      8 99999999999986

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.13  E-value=1.2e-10  Score=86.74  Aligned_cols=74  Identities=11%  Similarity=-0.012  Sum_probs=48.5

Q ss_pred             EEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCceEEe---e--CCcEEEcCCCC
Q psy5697          48 FRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDLRIAL---S--NGSLMFPPFPE  107 (145)
Q Consensus        48 ~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~~~~~---~--~GsL~i~~~~~  107 (145)
                      .+...|.+ ...  ..+.|.|.+.|.|.|.|+|++.+ |..   +.        ...+.....   .  .++|.|.++..
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  208 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP  208 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH
Confidence            55555655 222  33999999999999999998743 211   10        001111211   1  24799988876


Q ss_pred             CCCCCCCCCeEEEEEEEcCC
Q psy5697         108 TGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +      |+|.|+|.|+|..
T Consensus       209 ~------D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          209 G------DSATYFCAAIDTN  222 (238)
T ss_dssp             G------GCEEEEEEEEETT
T ss_pred             H------HCEEEEEEEeeCC
Confidence            5      8999999999984

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.12  E-value=1.1e-10  Score=89.93  Aligned_cols=70  Identities=19%  Similarity=0.278  Sum_probs=54.9

Q ss_pred             CeEEEeeE------eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE-cCCCceE-
Q psy5697          60 RGLELTRQ------TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-NEAGVIL-  131 (145)
Q Consensus        60 g~~L~C~a------~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~-N~~G~~~-  131 (145)
                      .+.|.|.+      .|+|.|.|+|+ +||..+.... .+....+++|.|.++..+      |+|.|+|.|. |..|... 
T Consensus       120 ~v~l~C~~~~~~~~~g~p~~~i~W~-k~~~~l~~~~-~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~~n~~g~~~~  191 (315)
T 1itb_B          120 DGGLVCPYMEFFKNENNELPKLQWY-KDCKPLLLDN-IHFSGVKDRLIVMNVAEK------HRGNYTCHASYTYLGKQYP  191 (315)
T ss_dssp             CEEEECSSCTTTCTTTTCCCCCEEE-ETTEECCCCS-SSEEEETTEEEESSCCGG------GCEEEEEEEEEEETTEEEE
T ss_pred             CeEEEEecccccccCCCCCCEEEEE-ECCEECCCcc-ceEeecCceEEEEeceeh------hCcEEEEEEEcCCCCcEEE
Confidence            38999998      99999999997 5888875432 335566889999988765      8999999999 8999874 


Q ss_pred             -EEEEEE
Q psy5697         132 -SRFVHV  137 (145)
Q Consensus       132 -s~~v~v  137 (145)
                       +..+.+
T Consensus       192 ~~~~~~~  198 (315)
T 1itb_B          192 ITRVIEF  198 (315)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence             344444

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.12  E-value=2.3e-10  Score=82.77  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             eEEEeeEec--cCCCEEEEEccCCeEee---------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTR--YEPSQLGWRFSNNTVIA---------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G--~P~P~i~W~~~dg~~i~---------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.+.+  .|.|.|+|++ ++..+.         ...+...+..+|+|.|.++..+      |+|.|+|.|.|..|.
T Consensus        14 v~L~c~~~~~~~~~~~i~W~k-~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~------D~G~Y~C~~~n~~g~   86 (176)
T 1hng_A           14 INLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD------DSGTYNVTVYSTNGT   86 (176)
T ss_dssp             EEECCTTCCCCTTEEEEEEEE-TTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGG------GCEEEEEEEEETTCC
T ss_pred             EEEcCCCCCcccccccEEEEe-CCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccc------cCEEEEEEEEeCCCC
Confidence            899996544  7788999985 665442         1122345567899999988765      899999999999999


Q ss_pred             e-EEEEEEEE
Q psy5697         130 I-LSRFVHVK  138 (145)
Q Consensus       130 ~-~s~~v~v~  138 (145)
                      . .+..+.|.
T Consensus        87 ~~~~~~~~l~   96 (176)
T 1hng_A           87 RILNKALDLR   96 (176)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7 55555554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.12  E-value=1.4e-10  Score=87.32  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEecc-CC-CEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRY-EP-SQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~-P~-P~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+..+..    ++..+.........+|.+...++. ..  ...+.|.|.+.|. |+ ++|+|++ ||..
T Consensus       122 ~~D~G~Y~C~a~n~~~~~----~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~  196 (254)
T 2c1o_A          122 AEDLGIYYCVQGSHFPPT----FGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSE  196 (254)
T ss_dssp             GGGCSEEEEEECSSSSCE----EBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-SSSE
T ss_pred             cccCEEEEEEEEcCcceE----ecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEE-CCCc
Confidence            678889999886543322    221111111222346776665544 11  1238999999995 44 4699985 7877


Q ss_pred             eecc-cCceE--Eee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYV-KDLRI--ALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~-~~~~~--~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +... .....  ...      .++|.|.++..+      |+|.|+|.|+|.....
T Consensus       197 l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          197 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTSTS  245 (254)
T ss_dssp             ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEECTTCSS
T ss_pred             ccCcceeccccccCCCCcEEEEEEEEecccccc------CCCeEEEEEEcCCCCC
Confidence            6532 00000  011      236888776544      7999999999997763

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.12  E-value=3.4e-11  Score=87.72  Aligned_cols=76  Identities=11%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          45 HYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+|.|...|......|  +.|.|.+.|.|. .|+|+| ||..+...... .....+++|.|.++..+      |+|.|+|
T Consensus         4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~W~k-~g~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C   75 (198)
T 1ugn_A            4 PKPTLWAEPGSVITQGSPVTLRCQGGQETQ-EYRLYR-EKKTAPWITRIPQELVKKGQFPIPSITWE------HTGRYRC   75 (198)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCC-CEEEEE-SSSCCHHHHTSCHHHHTTTEEEESSCCGG------GCEEEEE
T ss_pred             CCCeEeccCCCcccCCCcEEEEEEecCCCc-EEEEEE-CCccccccccccccCCcccEEEECCCCHH------HCeEEEE
Confidence            4677777776533333  999999999886 799985 77665321111 11235678999988765      8999999


Q ss_pred             EEEcCC-C
Q psy5697         122 RASNEA-G  128 (145)
Q Consensus       122 ~A~N~~-G  128 (145)
                      .|.|.. |
T Consensus        76 ~a~n~~~g   83 (198)
T 1ugn_A           76 YYGSDTAG   83 (198)
T ss_dssp             EEEETTTE
T ss_pred             EEECCCCC
Confidence            999998 6

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.12  E-value=6.1e-10  Score=83.15  Aligned_cols=110  Identities=12%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCcc--CeEEEeeEeccCC-CE----EEEEccCC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT--RGLELTRQTRYEP-SQ----LGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~--g~~L~C~a~G~P~-P~----i~W~~~dg   82 (145)
                      ..|++.|.|............+.  ..+   .....+|.+...+......  .+.|.|.+.|.|. |.    ++|+ ++|
T Consensus       140 ~~d~G~Y~C~~~n~~~~~~~~~~--l~V---~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~-~~~  213 (262)
T 3rjd_A          140 ISHNGTYHCSGMGKHRYTSAGIS--VTV---KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY-MGS  213 (262)
T ss_dssp             GGGCEEEEEEEESSSEEEEECEE--EEE---ECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEE-ETT
T ss_pred             hhhCEEEEEEEeCCCCccccceE--EEe---ccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEE-eCC
Confidence            56777888877554321111111  010   1112356666666432323  3899999999997 75    6776 477


Q ss_pred             eEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE--EEEEEE
Q psy5697          83 TVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHV  137 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~--s~~v~v  137 (145)
                      ..+...      ..+++|.|.++..+      |+|.|+|.|.|..|+..  |..+.|
T Consensus       214 ~~~~~~------~~~~~L~i~~v~~~------d~G~Y~C~a~n~~G~~~~~s~~~~l  258 (262)
T 3rjd_A          214 KTLRGR------NTSSEYQILTARRE------DSGLYWCEAATEDGNVLKRSPELEL  258 (262)
T ss_dssp             EEEEEE------ESCCEEEESSCCGG------GCEEEEEEEEETTSSCEEECCCEEE
T ss_pred             cEeccc------CCCceEEEEEechh------hCeEEEEEEEcccCceEEecCCeEE
Confidence            765421      24568999887655      89999999999999863  334444

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.11  E-value=1.1e-10  Score=80.66  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCe---EeecccCce-EEe-eCC----cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNT---VIAYVKDLR-IAL-SNG----SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~---~i~~~~~~~-~~~-~~G----sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|+|.|.| .|+|+|+|.|.+|+   ++......+ ... .+.    .|.|.++..+      |+|.|+|.|.|..|.
T Consensus        31 ~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~s------DsG~YrCsAn~~~g~  104 (122)
T 1xau_A           31 LFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLS------DNGSYSCSTNFNSQV  104 (122)
T ss_dssp             CEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGG------GCEEEEEEEEETTEE
T ss_pred             eEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEc------CCccEEEEeeCCCCc
Confidence            3899999965 78999999987763   332211111 111 122    6888888766      899999999999999


Q ss_pred             eEEEEEEEEecc
Q psy5697         130 ILSRFVHVKADS  141 (145)
Q Consensus       130 ~~s~~v~v~~~~  141 (145)
                      +.|..+++..-+
T Consensus       105 ieSHs~ti~V~~  116 (122)
T 1xau_A          105 INSHSVTIHVRE  116 (122)
T ss_dssp             EECCCEEEEEC-
T ss_pred             eeeeEEEEEEEe
Confidence            977776666544

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.11  E-value=7.5e-11  Score=89.68  Aligned_cols=113  Identities=10%  Similarity=-0.095  Sum_probs=68.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCC-EEEEcCCC-CC--ccCeEEEeeEeccCC--CEEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYP-FRIKSAPG-GN--RTRGLELTRQTRYEP--SQLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P-~~i~~p~~-~~--~~g~~L~C~a~G~P~--P~i~W~~~dg~   83 (145)
                      ..|++.|.|...+........+.        .....+| .++..+.+ ..  +..+.|.|.+.| |.  |.|+|++.+|.
T Consensus        60 ~~d~G~Y~C~~~n~~~~~~~~~~--------l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~  130 (292)
T 4dkd_C           60 FQNTGTYRCTEPGDPLGGSAAIH--------LYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGR  130 (292)
T ss_dssp             GGGCSCEEECCCC----CCEEEC--------CEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGC
T ss_pred             cccCEEEEEEEccCCCCcceEEE--------EEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCC
Confidence            56778888877553322211111        1111222 23444443 22  233899999998 65  88999876676


Q ss_pred             EeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          84 VIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        84 ~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+.... ......+++|.|.++..+      |+|.|+|.|.|..|...+..+.|.
T Consensus       131 ~~~~~~-~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~s~~~~l~  178 (292)
T 4dkd_C          131 PLMRHT-NYSFSPWHGFTIHRAKFI------QSQDYQCSALMGGRKVMSISIRLK  178 (292)
T ss_dssp             CCCSSC-CEECCSSSCCEETTCCGG------GCSEEEEEECSTTSCEECCCEEEE
T ss_pred             ccccCC-cccccCCceEEECCCCHH------HCeEEEEEEEeCCCceeEEEEEEE
Confidence            664332 234445677999887655      899999999999997755444433

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.11  E-value=4.2e-10  Score=85.39  Aligned_cols=114  Identities=8%  Similarity=-0.053  Sum_probs=68.6

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCC-EEEEcCCC-CC--ccCeEEEeeEeccCCCE-EEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYP-FRIKSAPG-GN--RTRGLELTRQTRYEPSQ-LGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P-~~i~~p~~-~~--~~g~~L~C~a~G~P~P~-i~W~~~dg~~   84 (145)
                      ..|++.|.|...+........+.   +     ....+| .++..+.. ..  +..+.|.|.+.|.|.|. |+|++.+|..
T Consensus        60 ~~d~G~Y~C~~~~~~~~~~~~~~---l-----~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~  131 (289)
T 3ejj_X           60 FKNTGTYRCTELEDPMAGSTTIH---L-----YVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ  131 (289)
T ss_dssp             GGGCEEEEEECCC-----CEEEE---E-----EECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEE
T ss_pred             cccCEEEEEEEeccCCcceeEEE---E-----EEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCee
Confidence            57888888886543222211111   1     111122 14555543 22  23399999999988876 9998778877


Q ss_pred             eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEE--EEEEE
Q psy5697          85 IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSR--FVHVK  138 (145)
Q Consensus        85 i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~--~v~v~  138 (145)
                      +.... ......+++|.|.++..+      |+|.|+|.|.|..+...+.  .+.|.
T Consensus       132 ~~~~~-~~~~~~~~~L~i~~v~~~------d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          132 VLRKT-VYFFSPWRGFIIRKAKVL------DSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             CCTTC-CEEEETTTEEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cCCCc-cEEECCCCCEEEeecccc------cCEEEEEEEEeCCCccccccEEEEEE
Confidence            75433 334556789999988665      8999999999543333333  44444

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.11  E-value=2.8e-10  Score=86.20  Aligned_cols=60  Identities=18%  Similarity=0.183  Sum_probs=44.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +.|.|.+.|+|.|.|+|++ +|.         ....+|++..  +..+      |+|.|+|.|+|.+|+. .+..+.|+
T Consensus       203 ~~l~C~~~g~P~p~i~W~~-~~~---------~~~~~g~~~~--v~~~------d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          203 QTPMCQAWGNPLPELKCLK-DGT---------FPLPIGESVT--VTRD------LEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             ECCCCCCEEESCCEEEEEE-TTT---------EECCTTSCEE--CCGG------GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeECccCCCCeEEEEE-CCc---------ccCCCCcEEE--eehh------hCeEEEEEEECCCCcEEEEEEEEEe
Confidence            8999999999999999986 554         2234565543  3322      8999999999999987 34455554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.11  E-value=3.3e-10  Score=87.35  Aligned_cols=86  Identities=12%  Similarity=0.063  Sum_probs=54.3

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEcc-CCeEeec------------ccCceEEee--CCcEEEcCCCC
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFS-NNTVIAY------------VKDLRIALS--NGSLMFPPFPE  107 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~-dg~~i~~------------~~~~~~~~~--~GsL~i~~~~~  107 (145)
                      +|.+.+.|.. ....  .+.|.|.+.|.| |.|+|++. +|..+..            ..+......  .++|.|.++..
T Consensus       162 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  240 (282)
T 1qok_A          162 ENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA  240 (282)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence            4566666655 2333  399999999999 99999874 4543310            111111112  23799988876


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCceE--EEEEEEE
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVIL--SRFVHVK  138 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~~--s~~v~v~  138 (145)
                      +      |+|.|.|.|.|..+...  ...+.|.
T Consensus       241 ~------DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          241 E------DAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             G------GCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             h------HCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            5      89999999999754443  2344444

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.10  E-value=5.3e-10  Score=80.83  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=63.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC-ccC-eEEEee-EeccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN-RTR-GLELTR-QTRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~-~~g-~~L~C~-a~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+..........       ......+|.+...+.. .. ..+ ..+.|. +.|.|+|.+.|.+ ++..+
T Consensus        92 ~~D~G~Y~C~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~-~~~~~  163 (225)
T 4fmk_A           92 VEDEGNYTCEFATFPNGTRRGVT-------WLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWIS-SLGGE  163 (225)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEE-------EEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEEC-SSCCE
T ss_pred             HHHCcceEEEEEeCCCcceeeee-------eeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEE-CCccc
Confidence            67888888876443222110000       1112234444444433 22 222 455554 6788999999975 44433


Q ss_pred             ecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          86 AYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        86 ~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .... ......+|      +|.|.++..+      |.|.|+|.|+|++|.. .+..++|.
T Consensus       164 ~~~~-~~~~~~~~~~~~~s~L~i~~~~~~------d~g~YtC~a~N~~~~~~~~~~v~l~  216 (225)
T 4fmk_A          164 AKDT-QEPGIQAGTVTIISRYSLVPVGRA------DGVKVTCRVEHESFEEPILLPVTLS  216 (225)
T ss_dssp             EEEE-EEECSSTTCEEEEEEEEECCCGGG------TTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             cCCc-ceEEecCCCEEEEEEEEEeeCCHH------HCCEEEEEEEcCCCCeEEEEEEEEE
Confidence            2211 11223343      4888776544      8999999999999876 55566553

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.09  E-value=3e-10  Score=86.19  Aligned_cols=84  Identities=11%  Similarity=0.072  Sum_probs=57.0

Q ss_pred             CEEEEcCCC--CCccC--eEEEeeEeccCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          47 PFRIKSAPG--GNRTR--GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        47 P~~i~~p~~--~~~~g--~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      |+.+..|..  .+..|  +.|.|.+ |.|.|  .|+|++.++ .+   ........++.|.|.++..+      |+|.|.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~-~l---~~~~~~~~~~~L~I~~v~~~------d~G~Y~   75 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDT-SL---GAVQSDTGRSVLTVRNASLS------AAGTRV   75 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTT-TT---CCEEEESSEEEEEECSCCGG------GCEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccc-cc---CcEEecCCccEEEECccCcc------cCceEE
Confidence            555554433  22233  9999999 99999  999986543 22   11222333447999988765      899999


Q ss_pred             EEEEcCCCce-EEEEEEEEecc
Q psy5697         121 CRASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      |.|.|..|+. .+..++|...+
T Consensus        76 C~a~n~~~~~~~~~~ltV~~~P   97 (210)
T 1gsm_A           76 CVGSCGGRTFQHTVQLLVYAFP   97 (210)
T ss_dssp             EEEEETTEEEEEEEEEEEEBCC
T ss_pred             EEEEeCCCceEEEEEEEEEecC
Confidence            9999999886 44567666544

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.09  E-value=3.6e-10  Score=83.55  Aligned_cols=119  Identities=13%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEecc-C-CCEEEEE
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRY-E-PSQLGWR   78 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~-P-~P~i~W~   78 (145)
                      +|..+ ..|++.|.|..........+... ...+   .....+|.+...+++ ..  +..+.|.|.+.|. | .|+|+|+
T Consensus        97 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~l~V---~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~  172 (237)
T 3sob_L           97 TISSLQPEDFATYYCQQSYTTPPTFGQGT-KVEI---KRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWK  172 (237)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCE-EEEE---ECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EECCCChhhCeEEEEeeccCCceEEcCcE-EEEE---ecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEE
Confidence            33333 67888999987553321111111 1111   114567877666554 11  2239999999984 4 5899998


Q ss_pred             ccCCeEeeccc-C--ceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEE
Q psy5697          79 FSNNTVIAYVK-D--LRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRF  134 (145)
Q Consensus        79 ~~dg~~i~~~~-~--~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~  134 (145)
                       +||..+.... .  ......+|      +|.|.+...+      |.|.|+|.|+|+.... ....
T Consensus       173 -k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          173 -VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE------KHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             -ETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHT------TCCEEEEEEECTTCSSCEEEE
T ss_pred             -ECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHcc------CCCcEEEEEeeCCCCCceeee
Confidence             4887765310 0  00111233      3666554333      7999999999997654 4433

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.09  E-value=3.7e-10  Score=87.88  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=61.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCC--EEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPS--QLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P--~i~W~~~dg~~i   85 (145)
                      ..|++.|.|...+.........++..+.-.......+|.+. .|......|  +.|.|.+.|.|+|  +|+|++ ||..+
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k-~g~~l  160 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFK-NGNEL  160 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEE-CCEEc
Confidence            67888998887554322100001000000011123345543 444333333  8999999999987  999984 88887


Q ss_pred             ecccCceEE-eeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          86 AYVKDLRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        86 ~~~~~~~~~-~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ......... ..+|      +|.|....      ..|.|.|+|.|+|..|..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~------~d~~g~Y~C~a~n~~~~~  206 (327)
T 2wng_A          161 SDFQTNVDPVGESVSYSIHSTAKVVLTR------EDVHSQVICEVAHVTLQG  206 (327)
T ss_dssp             CCEEEEEECSSCCSCEEEEEEEEEECCT------TGGGCEEEEEEECTTSCS
T ss_pred             cccccccccccCCCceEEEEEEEEechh------cCcCceEEEEEeccccCC
Confidence            532211010 1223      35554322      225799999999998863

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.09  E-value=7.5e-10  Score=81.08  Aligned_cols=108  Identities=17%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEecc-CCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRY-EPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~-P~P-~i~W~~~dg~~   84 (145)
                      ..|+++|.|...+.+....+ .  . +.. ......+|.+...++. ....|  +.|.|.+.|. |.| +|+|+ ++|..
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~-~--~-l~V-~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-~~~~~  160 (210)
T 3d9a_H           87 TEDTATYYCANWDGDYWGQG-T--L-VTV-SAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN-SGSLS  160 (210)
T ss_dssp             GGGCEEEEEEETTSSCBCCC-E--E-EEE-CCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEG-GGTBC
T ss_pred             cccCEEEEEEEecCcccccc-e--E-EEe-ccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEe-eCCcc
Confidence            67888998888653211110 0  1 111 1122356766555433 33333  8999999998 888 99996 46654


Q ss_pred             eecccCceEE-----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYVKDLRIA-----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~~~~~~~-----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.........     ...++|.|.+....      | |.|+|.|+|.+|..
T Consensus       161 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          161 SGVHTFPAVLQSDLYTLSSSVTVPSSTWP------S-ETVTCNVAHPASST  204 (210)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEEGGGTT------T-SCCEEEEEEGGGTE
T ss_pred             cceEEcCCccCCCcEEEEEEEEEcHHHcC------C-CcEEEEEEeCCCCc
Confidence            3211111111     11235777665321      5 99999999999985

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.09  E-value=6.4e-10  Score=85.37  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=61.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCC--------CCCCCEEEEcCCC-CCc--cCeEEEeeEeccC--CCEEE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSE--------NEHYPFRIKSAPG-GNR--TRGLELTRQTRYE--PSQLG   76 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P--~P~i~   76 (145)
                      ..|.+.|.|...+......+... ...+.....        ...++.++..|.+ ...  ..+.|.|.+.|.|  .|.|+
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~-~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~  169 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGT-KVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIH  169 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCE-EEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCE-EEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEE
Confidence            67888999988664322111101 001111100        0123455566655 223  3399999999988  59999


Q ss_pred             EEccC-CeEe---e-------------cccCceEEeeC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          77 WRFSN-NTVI---A-------------YVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        77 W~~~d-g~~i---~-------------~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      |++.+ |...   .             ..++......+     .+|.|.++..+      |+|.|+|.|.|..
T Consensus       170 W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~~  236 (276)
T 3auv_A          170 WVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAE------DTAVYYCARFVFF  236 (276)
T ss_dssp             EEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG------GCEEEEEEEECSS
T ss_pred             EEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChh------HCEEEEEEEEcCc
Confidence            98743 2221   0             01111222221     27999988765      8999999999983

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.08  E-value=4.3e-10  Score=82.25  Aligned_cols=109  Identities=17%  Similarity=0.035  Sum_probs=64.3

Q ss_pred             eeceee-eecCceeEeecccc-Cc----ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEE
Q psy5697           4 FHISTL-LADADTYIIADRSL-FP----RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQL   75 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~-~p----~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i   75 (145)
                      |.|..+ ..|++.|.|..... .+    +....+.  ..+.   ....+|.+...|...+..|  ++|.|.+.| |.|.+
T Consensus        65 l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~--l~V~---~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~  138 (201)
T 1nkr_A           65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLD--IVII---GLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMY  138 (201)
T ss_dssp             EEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEE--EEEE---CSSCCCEEEEESCSEECTTCEEEEEEEESS-CCSEE
T ss_pred             EEeccCCcccCeEEEEeEecCCCCccccCCCCCEE--EEee---ccCCCCceecCCCCccCCCCeEEEEEeCCC-CCceE
Confidence            334433 57888998886432 11    1111111  1111   1124678777776433333  999999988 67999


Q ss_pred             EEEccCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          76 GWRFSNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        76 ~W~~~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .|+| ||..+..........   .+++|.|.++.        |+|.|+|.|+|..
T Consensus       139 ~w~k-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--------d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          139 HLSR-EGEAHERRLPAGPKVNGTFQADFPLGPAT--------HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEE-TTCSSCEEEECEEEETTEEEEEEEEEECC--------SCEEEEEEEEETT
T ss_pred             EEEE-CCcccCcccccccccCCceEEEEEeCCcC--------CCeeEEEEEEcCC
Confidence            9985 776543211111111   24689997663        7999999999764

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.08  E-value=2.6e-09  Score=79.71  Aligned_cols=106  Identities=10%  Similarity=-0.024  Sum_probs=67.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCCC--ccCeEEEeeE-eccCCCEEEEEccCCeEee
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGN--RTRGLELTRQ-TRYEPSQLGWRFSNNTVIA   86 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~--~~g~~L~C~a-~G~P~P~i~W~~~dg~~i~   86 (145)
                      ..|++.|.|.........  .+.  ..      ...+|..+..+....  +..+.|.|.+ .|.|.|.++|++ ||..+.
T Consensus        57 ~~d~G~Y~C~~~~~~~s~--~~~--l~------v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~-~g~~~~  125 (262)
T 3rjd_A           57 VNDSGEYRCQRGLSGRSD--PIQ--LE------IHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFK  125 (262)
T ss_dssp             GGGCEEEEEEESSSCCCC--CEE--EE------EECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEE-TTEEEE
T ss_pred             cccCeEEEEEEecCCccc--cEE--EE------EeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEE-CCcccc
Confidence            567778888765422211  111  01      112344443333322  2339999999 899999999984 777764


Q ss_pred             cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          87 YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        87 ~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .      ...+++|.|.++..+      |+|.|+|.|.|..|.. ....+.|.
T Consensus       126 ~------~~~~~~l~i~~~~~~------d~G~Y~C~~~n~~~~~~~~~~l~V~  166 (262)
T 3rjd_A          126 F------FHWNSNLTILKTNIS------HNGTYHCSGMGKHRYTSAGISVTVK  166 (262)
T ss_dssp             E------EEECCCEEESSCCGG------GCEEEEEEEESSSEEEEECEEEEEE
T ss_pred             c------cCCCCeEEEEECChh------hCEEEEEEEeCCCCccccceEEEec
Confidence            2      224678999887655      8999999999999765 33355554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.08  E-value=8.6e-10  Score=83.64  Aligned_cols=90  Identities=17%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             CCCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeEee---c-----------ccCceEE----eeCCcEE
Q psy5697          44 EHYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTVIA---Y-----------VKDLRIA----LSNGSLM  101 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~i~---~-----------~~~~~~~----~~~GsL~  101 (145)
                      ..+|.+.+.|.. ..  +..+.|.|.+.|. .|.|.|++.+ +....   .           .+.....    ..+++|.
T Consensus       135 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~  213 (256)
T 3tf7_C          135 GSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLT  213 (256)
T ss_dssp             ---CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEE
T ss_pred             cCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEE
Confidence            346677777765 22  3339999999997 8899998632 22111   0           0011111    1234799


Q ss_pred             EcCCCCCCCCCCCCCeEEEEEEEcCCCceE---EEEEEEEec
Q psy5697         102 FPPFPETGFRPDVHSTVYRCRASNEAGVIL---SRFVHVKAD  140 (145)
Q Consensus       102 i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~---s~~v~v~~~  140 (145)
                      |.++..+      |+|.|+|.|+|..|.+.   ...+.|...
T Consensus       214 I~~v~~~------DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~  249 (256)
T 3tf7_C          214 LESASPS------QTSLYFCASSDAPGQLYFGEGSKLTVLEL  249 (256)
T ss_dssp             ESSCCGG------GCEEEEEEEEEETTEEEECCCEEEEEECG
T ss_pred             ECCCCHH------HCEEEEEEecCCCCccEECCCeEEEEEcc
Confidence            9988766      89999999999999873   345666643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=1.4e-10  Score=84.18  Aligned_cols=86  Identities=8%  Similarity=-0.015  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCCCc--cCeEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          45 HYPFRIKSAPGGNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        45 ~~P~~i~~p~~~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+|.|...|...+.  ..++|.|.+.| +++.+.|+ +||..+... ........+++|.|.++..+      |+|.|+|
T Consensus         3 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~-k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C   74 (188)
T 1oll_A            3 PKPFIWAEPHFMVPKEKQVTICCQGNY-GAVEYQLH-FEGSLFAVDRPKPPERINKVKFYIPDMNSR------MAGQYSC   74 (188)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCT-TCCEEEEE-ETTEEEEEECCSSCTTCCEEEEEESSCCGG------GCEEEEE
T ss_pred             CCCEEEeecCCcCCCCCCEEEEEecCC-CCCEEEEE-ECCCcccccccccCCCcceeEEEeCcCCcc------cCeEEEE
Confidence            36788877776333  33999999987 45899997 577765421 11111224568999988765      8999999


Q ss_pred             EEEcCCCce-EEEEEEEE
Q psy5697         122 RASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~  138 (145)
                      .|.|..|.. .+..+.|.
T Consensus        75 ~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           75 IYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEEETTEECCCCCCEEEE
T ss_pred             EecCCCCCCCCCCceEEE
Confidence            999987643 34444433

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.08  E-value=7.2e-10  Score=90.87  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=48.7

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCeEeecccCc--------eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYVKDL--------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~--------~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.| .|+|.|+|++ ||..+......        +....+++|.|.++..+      |+|.|+|.|+|.  ..
T Consensus       244 ~v~L~C~~~g~~p~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~A~N~--~~  314 (423)
T 3qs7_E          244 PLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN------DTGYYTCSSSKH--PS  314 (423)
T ss_dssp             CEEEEEEEEESSSCCCEEEEE-SSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTT------TCEEEEEEETTE--EE
T ss_pred             eEEEEEEEEcCCCCcEEEEEE-CCEEccccceeecccccCCceeEEEEEEEEeecCHH------HCEEEEEEEecC--CC
Confidence            3999999999 7789999985 66665432101        11233458999988765      899999999999  22


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      .+..+.|.
T Consensus       315 ~~~~L~V~  322 (423)
T 3qs7_E          315 QSALVTIV  322 (423)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            34444444

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.08  E-value=1.6e-10  Score=87.77  Aligned_cols=74  Identities=12%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             EEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEcc-CCeEee---c---------ccCceEEeeC--CcEEEcCCCCCC
Q psy5697          48 FRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFS-NNTVIA---Y---------VKDLRIALSN--GSLMFPPFPETG  109 (145)
Q Consensus        48 ~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~-dg~~i~---~---------~~~~~~~~~~--GsL~i~~~~~~~  109 (145)
                      .+.+.|.. ....|  +.|.|.+.|.|+|.|+|++. +|..+.   .         ..+......+  ++|.|.++..+ 
T Consensus       141 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~-  219 (257)
T 1f3r_B          141 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE-  219 (257)
T ss_dssp             CSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG-
T ss_pred             EEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChh-
Confidence            44455544 23333  99999999999999999873 344321   0         0111111122  37999888765 


Q ss_pred             CCCCCCCeEEEEEEEcCC
Q psy5697         110 FRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~  127 (145)
                           |+|.|.|.|.|..
T Consensus       220 -----D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          220 -----DVATYFCYQYNNG  232 (257)
T ss_dssp             -----GCSEEEEEEESSS
T ss_pred             -----hCEEEEEEEeCCC
Confidence                 8999999999975

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.08  E-value=2.1e-10  Score=83.83  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=68.2

Q ss_pred             ceee-eecCceeEeeccccCcc--cCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccC--CCEEEE
Q psy5697           6 ISTL-LADADTYIIADRSLFPR--PLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYE--PSQLGW   77 (145)
Q Consensus         6 ~~~~-~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P--~P~i~W   77 (145)
                      |..+ ..|++.|.|........  ......   +. .......+|.+...|.. ..  +..+.|.|.+.|.+  .|+|+|
T Consensus        72 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~---l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  147 (211)
T 3tv3_L           72 VSGLQTDDEAVYYCGSLVGNWDVIFGGGTK---LT-VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAW  147 (211)
T ss_dssp             EESCCGGGCEEEEEEEEETTTEEEECCCEE---EE-ECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEE
T ss_pred             ECCCChhHCEEEEEEEecCCCceeECCCce---EE-EeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEE
Confidence            3343 67888998887654331  110011   11 11223367887777765 22  23399999999964  589999


Q ss_pred             EccCCeEeeccc--CceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          78 RFSNNTVIAYVK--DLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        78 ~~~dg~~i~~~~--~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      + +||..+....  .......+|      .|.|.++..+      |.|.|+|.|+|..|..
T Consensus       148 ~-k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~Y~C~v~~~~~~~  201 (211)
T 3tv3_L          148 K-ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWK------SHRSYSCQVTHEGSTV  201 (211)
T ss_dssp             E-ETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHH------HSSCEEEEEEETTEEE
T ss_pred             E-ECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhC------CCCeEEEEEEECCCCE
Confidence            7 5888875311  011122233      4667654332      6999999999999765

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=1.8e-10  Score=88.06  Aligned_cols=120  Identities=17%  Similarity=0.044  Sum_probs=71.0

Q ss_pred             eeceee-eecCceeEeeccccC--cccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLF--PRPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWR   78 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~   78 (145)
                      |.|..+ ..|++.|.|...+..  -+....+.  ..+.   ....+|.+...|...+..|  ++|.|.+.+. .+++.|+
T Consensus        62 L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~--L~V~---~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~  135 (242)
T 1p6f_A           62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLD--LVVT---EMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLL  135 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEECCCCCCEE--EEEE---CCSCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEE
T ss_pred             EEecCCCcccCeEEEEEEecCCccccCCcceE--EEee---cccCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEE
Confidence            445444 678888888764321  11111122  1111   1123677777765433333  9999999875 5799998


Q ss_pred             ccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC--CceEEEEEEEE
Q psy5697          79 FSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA--GVILSRFVHVK  138 (145)
Q Consensus        79 ~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~--G~~~s~~v~v~  138 (145)
                      | ||..+...  ......+++|.|.++..+      |+|.|+|.|.|..  .+..|..+.|.
T Consensus       136 k-~g~~~~~~--~~~~~~~~~l~I~~v~~~------d~G~Y~C~a~n~~~~~s~~S~~~~l~  188 (242)
T 1p6f_A          136 K-EGRSSHVQ--RGYGKVQAEFPLGPVTTA------HRGTYRCFGSYNNHAWSFPSEPVKLL  188 (242)
T ss_dssp             E-CSSSCEEE--EEECSSEEEEEEEECCGG------GCEEEEEEEEEETTEECCCCCCEEEE
T ss_pred             E-CCCccCcc--ccCCCceEEEEeCCCccc------cCEEEEEEEECCCCcccCCCCCEEEE
Confidence            5 77654321  112233468999988765      8999999999975  23344444444

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.07  E-value=4.1e-10  Score=90.46  Aligned_cols=110  Identities=12%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEec-cCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTR-YEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G-~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+......+.-. . +..  .....+|.+...++. ..  ...+.|.|.+.| .|+| +|+|++ ||..
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~-~-l~V--~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~  158 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGT-K-LDL--KRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSE  158 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCE-E-EEE--CCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE-TTEE
T ss_pred             CcCCeeEEEEEecCCCccccCce-e-EEe--cCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEE-CCEE
Confidence            57888898888664332211101 0 111  222357776665543 11  223899999988 7888 999985 8887


Q ss_pred             eecccCc-eEE--ee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYVKDL-RIA--LS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~~~~-~~~--~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +...... ...  ..      .++|.|.++..+      |+|.|+|.|.|..|..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          159 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTSTS  207 (438)
T ss_dssp             ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHH------TCCEEEEEEEETTCSS
T ss_pred             cCCCceeccccccCCCCcEEEEEEEEEeCcccC------CCCeEEEEEEecccCC
Confidence            7533000 011  11      236888877654      8999999999999984

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.07  E-value=1e-09  Score=90.60  Aligned_cols=112  Identities=13%  Similarity=0.230  Sum_probs=67.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEE-EeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCCC--EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIV-YSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEPS--QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P--~i~W~~~dg~   83 (145)
                      ..|++.|.|...+......  .++..+ .........+|.+...|.. ..  +..+.|.|.+.|.|+|  +|+|+ +||.
T Consensus        79 ~~D~G~Y~C~a~n~~g~~~--~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~-k~g~  155 (523)
T 2rcj_C           79 AEDESDYYCASWNSSDNSY--VFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK-ADGS  155 (523)
T ss_pred             hhhCEEEEEEEccCCCccc--cccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEe-cCCC
Confidence            6788888888765432110  011100 0001111356777666655 22  2238999999999875  99997 4887


Q ss_pred             EeecccCce--EEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIAYVKDLR--IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~~~~~~~--~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.......  ....+|      +|.|.++..+      |+|.|+|.|+|..|..
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~G~Y~C~a~n~~~~~  204 (523)
T 2rcj_C          156 PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK------SHRSYSCQVTHEGSTV  204 (523)
T ss_pred             CCCCceEeccccccCCCCEEEEEEEEEechhcC------CCceEEEEEEecCccc
Confidence            764321110  111233      5888777554      8999999999999875

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.07  E-value=4.8e-10  Score=88.57  Aligned_cols=72  Identities=10%  Similarity=-0.053  Sum_probs=51.0

Q ss_pred             CeEEEeeEec-----cCCCEEEEEccCCeEeecc-------cCceEEe-----------eC--CcEEEcCCCCCCCCCCC
Q psy5697          60 RGLELTRQTR-----YEPSQLGWRFSNNTVIAYV-------KDLRIAL-----------SN--GSLMFPPFPETGFRPDV  114 (145)
Q Consensus        60 g~~L~C~a~G-----~P~P~i~W~~~dg~~i~~~-------~~~~~~~-----------~~--GsL~i~~~~~~~~~~~~  114 (145)
                      .+.|.|.+.|     +|.|.|+|+ +||..+...       .....+.           .+  ++|.|.++..+      
T Consensus       193 ~v~l~C~~~~~~~~~~P~p~i~W~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------  265 (363)
T 1wio_A          193 QVEFSFPLAFTVEKLTGSGELWWQ-AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ------  265 (363)
T ss_dssp             CEEEECCCCCCCCSSCEEEEEEEE-ESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGG------
T ss_pred             EEEEEEEEecccccCCCceeEEEe-cCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcC------
Confidence            3899998888     899999997 477665431       2122221           33  38999888655      


Q ss_pred             CCeEEEEEEEcC--CCce-EEEEEEEE
Q psy5697         115 HSTVYRCRASNE--AGVI-LSRFVHVK  138 (145)
Q Consensus       115 d~G~Y~C~A~N~--~G~~-~s~~v~v~  138 (145)
                      |+|.|+|.|+|.  .|.. .+..+.|.
T Consensus       266 d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          266 YAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             GCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             cCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            899999999999  9976 33344443

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.06  E-value=1.4e-09  Score=74.41  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=51.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCe----Ee-----------e--cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNT----VI-----------A--YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~----~i-----------~--~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+.|.|.....+.+.|+|+|.+..    .|           .  ...++..+..||+|.|.+++.+      |+|.|+|.
T Consensus        17 ~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~------D~G~Ytc~   90 (111)
T 2qsq_A           17 EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQN------DAGFYTLH   90 (111)
T ss_dssp             CEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGG------GCEEEEEE
T ss_pred             CEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCccc------CCeEEEEE
Confidence            399999853344568999874311    11           1  1123456788999999999876      89999999


Q ss_pred             EEcCCCceEEEEEEEEec
Q psy5697         123 ASNEAGVILSRFVHVKAD  140 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~~~  140 (145)
                      +.|..|......+.++..
T Consensus        91 v~~~~~~~~~~~~~L~V~  108 (111)
T 2qsq_A           91 VIKSDLVNEEATGQFRVY  108 (111)
T ss_dssp             EEETTSCCEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEe
Confidence            999988655555555543

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.06  E-value=9.9e-10  Score=74.16  Aligned_cols=82  Identities=12%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             CCCCEEEEcCCCCCccC--eEEEeeEeccCCC-----EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPGGNRTR--GLELTRQTRYEPS-----QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P-----~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.+...|...+..|  ++|.|.+.+.|.+     ++.|+ +||..+..      ...+++|.|.++..+      |+
T Consensus         6 ~~kP~l~~~p~~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~-k~g~~l~~------~~~~~~l~i~~v~~~------ds   72 (108)
T 4hwn_A            6 FPAPILRAVPSAEPQAGSPMTLSCQTKLPLQRSAARLLFSFY-KDGRIVQS------RGLSSEFQIPTASED------HS   72 (108)
T ss_dssp             CCCCEEEEESCSSCBTTCCEEEEEEC---------CCEEEEE-ETTEEEEE------EESCCEEEESSCCGG------GC
T ss_pred             CCCCEEEecCCCcCCCCCcEEEEEcccCCCCCcCcceEEEEE-ECCcCccC------CCcccEEEeCccCcc------cC
Confidence            34577777776533333  9999999887765     49998 48877642      224568999888765      89


Q ss_pred             eEEEEEEEcCCCce--EEEEEEEE
Q psy5697         117 TVYRCRASNEAGVI--LSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~--~s~~v~v~  138 (145)
                      |.|+|.|.|..|..  .|..+.|.
T Consensus        73 G~Y~C~~~~~~~~~~~~S~~l~L~   96 (108)
T 4hwn_A           73 GSYWCEAATEDNQVWKQSPQLEIR   96 (108)
T ss_dssp             EEEEEEEECTTSSSEEECCCEEEC
T ss_pred             eEEEEEEEeCCCceeccCCCEEEE
Confidence            99999999998743  44445544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.06  E-value=8.7e-10  Score=81.30  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEE-eccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEecc-CCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVY-SSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRY-EPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~-P~P-~i~W~~~dg~   83 (145)
                      ..|+++|.|.........  ..+|..+. ........+|.+...++. ..  +..+.|.|.+.|. |.| +|+|++ ++.
T Consensus        90 ~~D~G~Y~C~~~~~~~~~--~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~~~  166 (220)
T 1pz5_B           90 AEDTGIYYCTRGGAVGAM--DYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY-GAL  166 (220)
T ss_dssp             GGGCEEEEEEEECTTSSE--EEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG-GTC
T ss_pred             HHHCEEEEEEEecCCccc--ceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEec-CCc
Confidence            578889988875532110  01111110 111122356766554433 22  2338999999998 999 999975 554


Q ss_pred             Ee--ecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VI--AYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i--~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+  ...+..   ......++|.|.+...       |.|.|+|.|+|.+|+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-------~~g~Y~C~a~n~~~~~  211 (220)
T 1pz5_B          167 SSGVRTVSSVLQSGFYSLSSLVTVPSSTW-------PSQTVICNVAHPASKV  211 (220)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECGGGT-------TTSCCEEEEEEGGGTE
T ss_pred             ccceEEcCCcccCCeEEEEEEEEEcchhc-------CCceEEEEEEECCccE
Confidence            21  011111   0112245688865532       2499999999999975

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.06  E-value=1.5e-09  Score=79.03  Aligned_cols=55  Identities=9%  Similarity=0.093  Sum_probs=41.4

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS  132 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s  132 (145)
                      +.|.|.+ .| |.|+|+|+ +||..+..       ..+.+|.+..  .      .|+|.|+|.|+|.+|...+
T Consensus       118 v~L~C~~~~g-p~p~i~W~-~~~~~l~~-------~~~~~l~~~~--~------~d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          118 ATLTCEVLEG-TDVELKLY-QGKEHLRS-------LRQKTMSYQW--T------NLRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             TEEEEECSSC-TTCEEEEE-ETTEEEEE-------ESSSEEEEEC--S------CCSSCEEEEEEETTEEEEE
T ss_pred             EEEEEEeCCC-CCCEEEEE-ECCeECcC-------CCCCEEEEEE--h------hcCccEEEEEecCcCcccc
Confidence            8999999 77 99999997 47777641       2344666522  1      2899999999999998743

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.05  E-value=3.3e-10  Score=85.19  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=53.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCc--cCeEEEeeEeccC-----CCEEEEEccC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNR--TRGLELTRQTRYE-----PSQLGWRFSN   81 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P-----~P~i~W~~~d   81 (145)
                      ..|++.|.|...       |...    .........+|.+.+.|.. ...  ..+.|.|.+.|.|     .|.|+|++.+
T Consensus        13 ~~dsg~Y~C~a~-------g~~~----~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~   81 (254)
T 2c1o_A           13 PGTSVKLSCKAS-------GYSF----TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQR   81 (254)
T ss_dssp             ------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEEC
T ss_pred             CCccEEEEEcCc-------hhhh----hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeC
Confidence            467778888774       1111    1111111225667776765 223  3399999999999     4999998633


Q ss_pred             -CeEee-----------cccCceEEe-eCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          82 -NTVIA-----------YVKDLRIAL-SNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        82 -g~~i~-----------~~~~~~~~~-~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                       |..+.           ..+...... ..+  +|.|.++..+      |+|.|+|.|.|..+...
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~~~  140 (254)
T 2c1o_A           82 PGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAE------DLGIYYCVQGSHFPPTF  140 (254)
T ss_dssp             TTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEECSSSSCEE
T ss_pred             CCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcc------cCEEEEEEEEcCcceEe
Confidence             43221           011122222 222  7999988765      89999999999977543

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.05  E-value=9.6e-10  Score=83.03  Aligned_cols=133  Identities=13%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeeeE----EEec-------cCCCCCCCEEEEcCCC-CC--ccCeEEEeeEec
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGNI----VYSS-------RSENEHYPFRIKSAPG-GN--RTRGLELTRQTR   69 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~-------~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G   69 (145)
                      +|..+ ..|+++|+|...+..+... ..++..    |...       ......+|.+...|.. ..  +..+.|.|.+.|
T Consensus        89 ~I~~v~~~DsG~Y~C~~~n~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           89 QLKSVSSEDTATYYCSYFDSDDYAM-EYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             EECSCCGGGCEEEEEEEECTTCTTC-EEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred             EECCCChhhCEEEEEEEecCCCcce-eEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence            34444 6789999998866421111 011110    1111       0011234566666654 22  333999999999


Q ss_pred             cCCC-EEEEEcc-CCeEee---c--------c-cCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE-
Q psy5697          70 YEPS-QLGWRFS-NNTVIA---Y--------V-KDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS-  132 (145)
Q Consensus        70 ~P~P-~i~W~~~-dg~~i~---~--------~-~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s-  132 (145)
                      .|.| .|.|++. +|..+.   .        . .+.......  .+|.|.++..+      |+|.|.|.|.|....... 
T Consensus       168 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~~~~~~fg~  241 (257)
T 3gkz_A          168 SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAE------DAASYFCHQWSSFPFTFGS  241 (257)
T ss_dssp             CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEECSSSSCEECC
T ss_pred             CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChH------HCEEEEEEEccCCceEEcC
Confidence            9988 9999863 232211   0        0 111111112  25999988765      899999999997655533 


Q ss_pred             -EEEEEEeccCCC
Q psy5697         133 -RFVHVKADSRIP  144 (145)
Q Consensus       133 -~~v~v~~~~~~p  144 (145)
                       ..+.|...++-|
T Consensus       242 gt~l~v~~~~~~~  254 (257)
T 3gkz_A          242 GTKLEIKRAPHHH  254 (257)
T ss_dssp             CEEEEECCC----
T ss_pred             CEEEEEEeCCCCC
Confidence             356665544433

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.05  E-value=5.3e-10  Score=81.65  Aligned_cols=73  Identities=14%  Similarity=0.090  Sum_probs=49.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee-----------cccCceEEe-eCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDLRIAL-SNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~~~~~-~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+.|.|.|.|+|++.+ |..+.           ..+...... ..+  +|.|.++..+      |+|.|+|.|.
T Consensus        18 ~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   91 (213)
T 3d9a_L           18 SVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE------DFGMYFCQQS   91 (213)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             cEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh------hCEEEEEeee
Confidence            3999999999999999998643 32210           111122222 222  8999988765      8999999999


Q ss_pred             cCCCceEEE--EEEEE
Q psy5697         125 NEAGVILSR--FVHVK  138 (145)
Q Consensus       125 N~~G~~~s~--~v~v~  138 (145)
                      |..|...+.  .+.|.
T Consensus        92 ~~~~~~~~~~~~l~V~  107 (213)
T 3d9a_L           92 NSWPYTFGGGTKLEIK  107 (213)
T ss_dssp             SSSSCEECCCEEEEEC
T ss_pred             cCCcceeCCCEEEEEe
Confidence            998865432  44443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.05  E-value=1.7e-10  Score=84.02  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.| |++ |+|+ +||..+...       .+++|.|.+ +..+      |+|.|+|.|.|..|..
T Consensus        17 v~L~C~~~~-~~~-i~W~-k~g~~l~~~-------~~~~L~I~~~~~~~------D~G~Y~C~a~n~~g~~   71 (186)
T 1jbj_A           17 VELTCPLDS-DEN-LKWE-KNGQELPQK-------HDKHLVLQDFSEVE------DSGYYVCYTPASNKNT   71 (186)
T ss_dssp             EEEECSSCC-CTT-CEEE-ETTEEECSC-------CCSEEEEESCCTTT------SCEEEEEECSSCCCCC
T ss_pred             EEEEEeCCC-CCc-eEEE-ECCEECCCC-------CCCEEEECCCCccc------cCEEEEEEEEeCCCcE
Confidence            899999999 555 9997 588887532       356899998 7655      8999999999999984

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.04  E-value=2.1e-09  Score=77.69  Aligned_cols=92  Identities=10%  Similarity=0.100  Sum_probs=57.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeE-EEeccCCCCCCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecc
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNI-VYSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYV   88 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~   88 (145)
                      ..|+++|.|...+....    ..... |..    ....|.+......     ..|.|.+.|.|.|+|+|+ +||+.+...
T Consensus        69 ~~DsG~Y~C~~~n~~~~----~~~~L~V~~----~~~~p~i~~~~~~-----~~L~C~~~~~p~p~i~W~-~~~~~l~~~  134 (171)
T 1ccz_A           69 SSDEDEYEMESPNITDT----MKFFLYVLE----MVSKPMIYWECSN-----ATLTCEVLEGTDVELKLY-QGKEHLRSL  134 (171)
T ss_dssp             GGGCEEEEEECTTCCSC----EEEEEEEEC----CCCCCEEEEETTT-----TEEEEECSSCSSCEEEEE-ETTEEEEEE
T ss_pred             hhhCceEEEEEeCCCCc----EEEEEEEEC----cCCCCEEEEecCC-----cEEEEEeCCCCCcEEEEE-ECCEECcCC
Confidence            57888888877543221    11111 211    1234665544322     479999999999999997 588877532


Q ss_pred             cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          89 KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        89 ~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..       .+|.+..        ..|+|.|+|.|+|.+|..
T Consensus       135 ~~-------~~l~~~~--------~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          135 RQ-------KTMSYQW--------TNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             SS-------SEEEEEC--------SCCSSCEEEEEEETTEEE
T ss_pred             cc-------eEEEEec--------cCCCceEEEEEEcccCcc
Confidence            21       2333321        127999999999999986

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.04  E-value=5.6e-10  Score=90.29  Aligned_cols=76  Identities=7%  Similarity=-0.077  Sum_probs=53.3

Q ss_pred             CC-EEEEcCCC-CCccC--eEEEeeEeccCCC---EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeE
Q psy5697          46 YP-FRIKSAPG-GNRTR--GLELTRQTRYEPS---QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        46 ~P-~~i~~p~~-~~~~g--~~L~C~a~G~P~P---~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      +| .+...|.+ ....|  +.|.|.+.|.|+|   +|+|+ +||..+...... ....+++|.|.++..+      |+|.
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~-k~g~~l~~~~~~-~~~~~~~L~i~~~~~~------d~G~  156 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLL-RGEKELKREPAV-GEPAEVTTTVLVRRDH------HGAN  156 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEE-ETTEEEEEEECC-TTTEEEEEEEECCSSC------SSCE
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEe-eCCEEeeccccc-ccccceEEEEEeeccc------cCce
Confidence            44 34355554 22233  8999999999998   99998 488877533211 1123458999877554      8999


Q ss_pred             EEEEEEcCCCc
Q psy5697         119 YRCRASNEAGV  129 (145)
Q Consensus       119 Y~C~A~N~~G~  129 (145)
                      |+|.|.|.+|.
T Consensus       157 Y~C~a~n~~g~  167 (450)
T 1z7z_I          157 FSCRTELDLRP  167 (450)
T ss_dssp             EEEEEEEECGG
T ss_pred             EEEEEEcccCC
Confidence            99999999885

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.04  E-value=1.7e-10  Score=84.44  Aligned_cols=114  Identities=13%  Similarity=0.190  Sum_probs=60.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEE-EeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEec-cCCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIV-YSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTR-YEPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G-~P~P-~i~W~~~dg~   83 (145)
                      ..|++.|.|.............++..+ .........+|.+...++. ..  ...+.|.|.+.| .|+| +|+|++ ||.
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k-~g~  162 (218)
T 3s96_B           84 PEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA-NGT  162 (218)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTE
T ss_pred             cccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE-CCE
Confidence            678888888875432200000011000 0011122356777665544 21  223899999999 6777 999985 888


Q ss_pred             EeecccCc-eEEeeCCc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIAYVKDL-RIALSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~~~~~~-~~~~~~Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+...... .....+|+      |.|.+...+      |.|.|+|.|+|..|..
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~  210 (218)
T 3s96_B          163 PITQGVDTSNPTKEGNKFMASSFLHLTSDQWR------SHNSFTCQVTHEGDTV  210 (218)
T ss_dssp             EC--------------CEEEEEEEEEEHHHHH------TCSCEEEEEEETTEEE
T ss_pred             ECcCceecCcccccCCcEEEEEEEEEeHHHcc------CCCeEEEEEEeCCCcc
Confidence            87532111 11112443      555443222      6999999999998865

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.03  E-value=4.5e-10  Score=84.74  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEecc-CCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRY-EPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~-P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|......+..    ++..+.-.......+|.+...++. ..  +..+.|.|.+.|. |+| +|+|++ ||..
T Consensus       118 ~~D~G~Y~C~~~~~~~~~----~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~  192 (252)
T 3bkj_L          118 AEDLGVYYCFQASLVPLT----FGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSE  192 (252)
T ss_dssp             GGGCEEEEEEECSBSSCE----ECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             cccCEEEEEEEEcCCccE----ECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEE-CCee
Confidence            678889988876543321    111110001122346776665544 11  2238999999995 544 899985 8887


Q ss_pred             eecc-cCc--eEEeeCCc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAYV-KDL--RIALSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~~-~~~--~~~~~~Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +... ...  .....+|+      |.|.++..+      |+|.|+|.|+|.....
T Consensus       193 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          193 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHH------HCCEEEEEEECTTCSS
T ss_pred             cCCCeeeecCcccCCCCCEEEEEEEEEcchhcc------CCCeEEEEEEeCCCCC
Confidence            6532 000  01123443      788766433      7999999999987653

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.03  E-value=3.5e-09  Score=78.71  Aligned_cols=115  Identities=10%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCc--cCeEEEeeEeccCC--CEEEEE
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNR--TRGLELTRQTRYEP--SQLGWR   78 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~--P~i~W~   78 (145)
                      +|..+ ..|++.|.|...+......+... ...+........++.++..|.. ...  ..+.|.|.+.|.|.  |.|+|+
T Consensus        78 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~-~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~  156 (240)
T 1moe_A           78 IIDPVEADDVATYYCQQTNEDPYTFGGGT-KLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWV  156 (240)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCCBCCCE-EEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred             EEcCCChhhCEEEEEEEccCCceeecCCE-EEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEE
Confidence            34333 67888999988665432211111 1111111111134456666665 223  33999999999984  699998


Q ss_pred             ccC-CeEee----------------cccCceEEeeC-----CcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          79 FSN-NTVIA----------------YVKDLRIALSN-----GSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        79 ~~d-g~~i~----------------~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.+ |..+.                ..+.......+     .+|.|.++..+      |+|.|.|.|.+.
T Consensus       157 k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~~~  220 (240)
T 1moe_A          157 KQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE------DTAVYYCAPFGY  220 (240)
T ss_dssp             EECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEECST
T ss_pred             EECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHH------HCEEEEEEEEec
Confidence            742 22210                01111122211     37999988765      899999999953

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=79.05  Aligned_cols=65  Identities=14%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CeEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      ++.|.|.+.|. |.|.|+|++ ||..+....+......++  +|.|.++..+      |+|.|+|.|.|..|...
T Consensus        19 ~~~l~C~~~~~~p~~~i~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~~~n~~~~~~   86 (212)
T 2r15_A           19 GIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIWLQINEPTPN------DKGKYVMELFDGKTGHQ   86 (212)
T ss_dssp             EEEEEEEBSSCCSSCEEEEEE-TTEECCCCSSEEEEEETTEEEEEEESCCGG------GCEEEEEEEECSSCEEE
T ss_pred             eEEEEEEEeccCCCceEEEEE-CCEEccCCCeEEEEEeCCEEEEEECCCCcc------cCEEEEEEEecCCcceE
Confidence            47999999996 589999984 888876544433334444  4999888765      89999999999998763

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.03  E-value=4.6e-09  Score=77.55  Aligned_cols=119  Identities=11%  Similarity=0.043  Sum_probs=67.2

Q ss_pred             eeceee-eecCceeEeeccccCcccCCceeeeEEEe-ccCCCCCCCEEE-EcCCCC-CccCeEEEeeEec-cCC--CEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRPLGYLVGNIVYS-SRSENEHYPFRI-KSAPGG-NRTRGLELTRQTR-YEP--SQLG   76 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~P~~i-~~p~~~-~~~g~~L~C~a~G-~P~--P~i~   76 (145)
                      ++|..+ ..|+++|.|.......   +..++..+.- .......+|.+. ..|... .+..+.|.|.+.| .|.  ++|+
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           83 LQMNSLKSDDTAMYYCVIRGDVY---NRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEECSCCGGGCEEEEEEEESCTT---CCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEECCCCHHHCEEEEEEEECCCh---hheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeECCCCEEEE
Confidence            344444 6788999998755310   0112211111 111234566655 344433 1223899999998 786  4999


Q ss_pred             EEccCCeEeecccCceEE-eeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEE
Q psy5697          77 WRFSNNTVIAYVKDLRIA-LSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILS  132 (145)
Q Consensus        77 W~~~dg~~i~~~~~~~~~-~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s  132 (145)
                      |+ +||..+......... ..+|      +|.|.+....      |.|.|+|.|+|..|....
T Consensus       160 W~-~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~ytC~v~~~~~~~~~  215 (221)
T 3m8o_H          160 WS-ESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCL------AGKSVTCHVKHYTNPSQD  215 (221)
T ss_dssp             ES-CCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSC------TTCEEEEEEEETTSCCEE
T ss_pred             EE-ECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcC------CCCeEEEEEEECCCCcee
Confidence            96 577665321111111 1223      4777665433      789999999999987643

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.02  E-value=5.1e-10  Score=94.40  Aligned_cols=60  Identities=12%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CeEEEeeEe-ccCCCEEEEEccCCeEeecccCc--------eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDL--------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~--------~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.|.|.+. |.|.|+|+|++ ||..+......        +....+++|.|.++..+      |+|.|+|.|+|.
T Consensus       244 ~v~L~C~~~~g~p~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~N~  312 (527)
T 3qs9_E          244 PLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN------DTGYYTCSSSKH  312 (527)
T ss_dssp             CEEEEEEEEESSSCCCEEEEC-SSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGG------GCEEEEEEETTE
T ss_pred             eEEEEEEEccCCCCeEEEEEE-CCEECCCCceeeeeeeccCcceeeEEEEEEccCCcc------cCeEEEEEEEeC
Confidence            499999996 99999999985 66665432111        11233457999988765      899999999999

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.02  E-value=6e-10  Score=80.56  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=48.4

Q ss_pred             CeEEEeeEeccCCCE---EEEEccCCeEeecc-c-------------Cce----------EEeeCCcEEEcCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEPSQ---LGWRFSNNTVIAYV-K-------------DLR----------IALSNGSLMFPPFPETGFRP  112 (145)
Q Consensus        60 g~~L~C~a~G~P~P~---i~W~~~dg~~i~~~-~-------------~~~----------~~~~~GsL~i~~~~~~~~~~  112 (145)
                      .+.|.|.+.|.|.|.   |+|+|.++..+... .             ...          ....+++|.|.++..+    
T Consensus        18 ~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~----   93 (225)
T 4fmk_A           18 TVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVE----   93 (225)
T ss_dssp             CEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGG----
T ss_pred             CEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHH----
Confidence            399999999988874   89987655433210 0             000          0123568999988765    


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEE
Q psy5697         113 DVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                        |+|.|+|.|.|..|.......
T Consensus        94 --D~G~Y~C~~~~~~~~~~~~~~  114 (225)
T 4fmk_A           94 --DEGNYTCEFATFPNGTRRGVT  114 (225)
T ss_dssp             --GCEEEEEEEEEETTEEEEEEE
T ss_pred             --HCcceEEEEEeCCCcceeeee
Confidence              899999999999887654433

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.02  E-value=2.9e-09  Score=80.06  Aligned_cols=111  Identities=9%  Similarity=0.013  Sum_probs=59.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccC------CCCCCCEEEEcCCC-CCccC--eEEEeeEeccC--CCEEEEE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRS------ENEHYPFRIKSAPG-GNRTR--GLELTRQTRYE--PSQLGWR   78 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~------~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P--~P~i~W~   78 (145)
                      ..|+++|.|...+......+...--.|..+..      ....++.++..|+. ....|  +.|.|.+.|.|  .|.|.|+
T Consensus        80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  159 (242)
T 2znx_A           80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXI  159 (242)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred             hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence            57888999988654321111101000111111      00123344555443 33333  99999999987  5899998


Q ss_pred             ccC-CeEee---c------------ccCceEEee-----CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          79 FSN-NTVIA---Y------------VKDLRIALS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        79 ~~d-g~~i~---~------------~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.+ |..+.   .            .........     .++|.|.++..+      |+|.|.|.|.|.
T Consensus       160 k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~~~  222 (242)
T 2znx_A          160 RKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE------DTATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGG------GCEEEEEEETTS
T ss_pred             eeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcC------cCEEEEEeccCC
Confidence            743 33221   0            111112211     138999988765      899999999995

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.02  E-value=8.2e-11  Score=77.03  Aligned_cols=49  Identities=18%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCC-CCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPF-PETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~-~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.+.|.|+  |+|+| ||..+...       .+++|.|.++ ..+      |+|.|+|.|.+
T Consensus        17 v~L~C~~~g~P~--i~W~k-dg~~l~~~-------~~~~L~I~~v~~~~------DsG~Y~C~A~t   66 (82)
T 3r08_E           17 VELTCPLDSDEN--LKWEK-NGQELPQK-------HDKHLVLQDFSEVE------DSGYYVCYTPA   66 (82)
T ss_dssp             EEEECSSCCCSS--CEEEE-TTEECTTC-------CSSCCBCCSCCTTT------TCSCEEEECSS
T ss_pred             EEEEEECCCCCc--EEEEE-CCEECcCC-------CCCEEEECccCccC------cCEEEEEEEcc
Confidence            899999999984  99974 88887432       4678999885 434      89999999976

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.01  E-value=1.2e-09  Score=91.06  Aligned_cols=115  Identities=9%  Similarity=-0.059  Sum_probs=68.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEccCCeE-
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRFSNNTV-   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~-   84 (145)
                      ..|++.|.|...+......        .........+|.|...|.. ..  +..+.|.|.+.|.| ++.|+|++.++.. 
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~--------~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~  155 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLS--------FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYP  155 (585)
T ss_pred             cccCEEEEEEcccCCCCce--------EEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCc
Confidence            5677777776643322111        1111223445666666655 22  23399999999755 6789998754321 


Q ss_pred             --eec--------ccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          85 --IAY--------VKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        85 --i~~--------~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                        +.+        ..+...+..+|      +|.|.++..+      |+|.|+|.|.|..|.. .+..+.|.
T Consensus       156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~g~~~~~~~l~V~  220 (585)
T 2ocw_A          156 VLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLS------DAGQYLCQAGDDSNSNKKNADLQVL  220 (585)
T ss_pred             eEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChh------HCeEEEEEeccCCccccceEEEEEc
Confidence              111        11222333334      6999888765      8999999999999986 34455554

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.01  E-value=1.7e-09  Score=72.28  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceEEe-eC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRIAL-SN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~~~-~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+.|.|.|.|.|++.+ |..   +..        .+...... ..  .+|.|.++..+      |+|.|.|.|.
T Consensus        18 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~   91 (108)
T 1jhl_L           18 TITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE------DFAMYICQQH   91 (108)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT------CCSEEEEEEC
T ss_pred             CEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHH------HCEEEEEEEc
Confidence            3999999999999999998753 221   110        11111222 12  37999988766      8999999999


Q ss_pred             cCCC
Q psy5697         125 NEAG  128 (145)
Q Consensus       125 N~~G  128 (145)
                      |...
T Consensus        92 n~~~   95 (108)
T 1jhl_L           92 NEYP   95 (108)
T ss_dssp             SSSS
T ss_pred             cCCc
Confidence            9843

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.01  E-value=5.6e-10  Score=81.64  Aligned_cols=66  Identities=14%  Similarity=0.143  Sum_probs=46.1

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEe---e--------cccCceEEe-eC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVI---A--------YVKDLRIAL-SN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i---~--------~~~~~~~~~-~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+.|.|.|.|+|++.+ |..+   .        ..+...... .+  .+|.|.++..+      |+|.|+|.|.
T Consensus        17 ~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   90 (210)
T 1lk3_L           17 KLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD------DTAIYFCQQS   90 (210)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHH------HCeEEEEEEE
Confidence            3999999999999999998643 3221   0        111122222 22  28999988765      8999999999


Q ss_pred             cCCCceE
Q psy5697         125 NEAGVIL  131 (145)
Q Consensus       125 N~~G~~~  131 (145)
                      |..|...
T Consensus        91 ~~~~~~~   97 (210)
T 1lk3_L           91 WNGPLTF   97 (210)
T ss_dssp             SSSSCEE
T ss_pred             cCCCcee
Confidence            9988653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.01  E-value=9e-10  Score=80.40  Aligned_cols=79  Identities=11%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceEEe---eCCcEEEcCCCCC
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRIAL---SNGSLMFPPFPET  108 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~~~---~~GsL~i~~~~~~  108 (145)
                      |.+.+.|.. ..  +..+.|.|.+.|.|.|.|+|++.+ +..   +..        ........   .+++|.|.++..+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            344555554 22  333999999999999999998632 211   100        01111211   2238999988765


Q ss_pred             CCCCCCCCeEEEEEEEcCCCceE
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                            |+|.|+|.|.|..|...
T Consensus        82 ------D~G~Y~C~~~~~~~~~~   98 (213)
T 3r06_A           82 ------DIGSYYCQQYYNYPWTF   98 (213)
T ss_dssp             ------GCSEEEEEECSSSSCEE
T ss_pred             ------cCEEEEEecccCCceEE
Confidence                  89999999999877553

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.01  E-value=1e-09  Score=81.11  Aligned_cols=70  Identities=13%  Similarity=0.080  Sum_probs=53.5

Q ss_pred             CCCEEEEcCCC-CC--ccCeEEEeeEeccCCCE-EEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          45 HYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQ-LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        45 ~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~-i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+|.+...|.+ ..  +..+.|.|.+.|.|.|. |+|++ ||..+...        .++|.|.++..+      |+|.|+
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k-~g~~l~~~--------~~~L~i~~v~~~------D~G~Y~   70 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-NESLISSQ--------ASSYFIDAATVD------DSGEYR   70 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEE-TTEEESCC--------SSEEEESSCCGG------GCEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEE-CCEEcccC--------ccEEEEeccccc------CCEEEE
Confidence            45777777775 22  33499999999999887 99985 77776432        278999888665      899999


Q ss_pred             EEEEcCCCc
Q psy5697         121 CRASNEAGV  129 (145)
Q Consensus       121 C~A~N~~G~  129 (145)
                      |.|.|...+
T Consensus        71 C~a~n~~~s   79 (204)
T 3sgj_C           71 CQTQLSTLS   79 (204)
T ss_dssp             EEETTSBCC
T ss_pred             EEeCCCccc
Confidence            999996444

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.00  E-value=9.2e-10  Score=85.37  Aligned_cols=113  Identities=17%  Similarity=0.020  Sum_probs=64.5

Q ss_pred             eecCceeEeeccccCcc-----cCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCC
Q psy5697          10 LADADTYIIADRSLFPR-----PLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg   82 (145)
                      ..|++.|.|...+....     ....+.  ..+   .....+|.+...|......|  +.|.|.+.+ |.+.+.|++ ||
T Consensus       183 ~~D~G~Y~C~a~n~~g~~~~s~~s~~~~--l~V---~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~-~~~~~~W~k-~g  255 (316)
T 3vh8_G          183 LALAGTYRCYGSVTHTPYQLSAPSDPLD--IVV---TGPYEKPSLSAQPGPKVQAGESVTLSCSSRS-SYDMYHLSR-EG  255 (316)
T ss_dssp             GGGCEEEEEEEECTTCTTBCCCCCCCEE--EEE---ECSSCCCEEEEESCSCCCTTSCCEEEEEESS-CCSEEEEEE-TT
T ss_pred             hhhCceEEEEEecCCCCccccCCCCCEE--EEe---cCCCCCCeEEeCCCCeecCCCcEEEEEECCC-CCcEEEEEE-CC
Confidence            57888999987654221     111112  111   11235677777766533333  999999985 889999985 77


Q ss_pred             eEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc----eEEEEEEEE
Q psy5697          83 TVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGV----ILSRFVHVK  138 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~----~~s~~v~v~  138 (145)
                      ..+.... .......    ++|.|.++.        |+|.|+|.|+|..+.    ..|..+.|.
T Consensus       256 ~~~~~~~-~~~~~~~~~~~~~L~i~~v~--------D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  310 (316)
T 3vh8_G          256 GAHERRL-PAVRKVNRTFQADFPLGPAT--------HGGTYRCFGSFRHSPYEWSDPSDPLLVS  310 (316)
T ss_dssp             SSCCEEE-ECEECTTSCEEEEEECC-------------CEEEEEEEBTTBTTEECCCCCCEEC-
T ss_pred             CcCCCce-eceeccCCceeEEEEcCCcC--------CCEEEEEEeecCCCchhccCCCCcEEEE
Confidence            6543211 1111112    478886653        799999999998875    234445444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.00  E-value=1.3e-09  Score=77.85  Aligned_cols=72  Identities=11%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             CCCCEEEEcCCC-CCccC--eEEEeeEeccCCCE-EEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          44 EHYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQ-LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~-i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ..+|.+...|.. ....|  +.|.|.+.|.|.|. ++|++ ||..+..        .+++|.|.++..+      |+|.|
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~-~~~~~~~--------~~~~L~i~~~~~~------d~G~Y   69 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-NESLISS--------QASSYFIDAATVN------DSGEY   69 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEE-TTEEEES--------SCSEEEESSCCGG------GCEEE
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEE-CCEEccC--------CceEEEEeCCCcc------cCEEE
Confidence            346788878776 33333  89999999999887 89984 7776542        3568999888665      89999


Q ss_pred             EEEEEcCCCce
Q psy5697         120 RCRASNEAGVI  130 (145)
Q Consensus       120 ~C~A~N~~G~~  130 (145)
                      +|.|.|..++.
T Consensus        70 ~C~~~n~~~s~   80 (175)
T 1fnl_A           70 RCQTNLSTLSD   80 (175)
T ss_dssp             EEECSSSCCCC
T ss_pred             EEEeeCCcccc
Confidence            99999977643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.99  E-value=1.5e-09  Score=81.36  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeeeEEEecc------------CCCCCCCEEEEcCCC-CC--ccCeEEEeeEe
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSR------------SENEHYPFRIKSAPG-GN--RTRGLELTRQT   68 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------------~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~   68 (145)
                      +|..+ ..|++.|+|...+......+...--.+....            .....+|.++..|+. ..  +..+.|.|.+.
T Consensus        77 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  156 (250)
T 3esu_F           77 TISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDS  156 (250)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECC
T ss_pred             EEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEec
Confidence            34444 6789999999866433321111100011100            001134455566655 22  23399999999


Q ss_pred             ccC--CCEEEEEccC-CeEeec----------------ccCceEEeeCC-----cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          69 RYE--PSQLGWRFSN-NTVIAY----------------VKDLRIALSNG-----SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        69 G~P--~P~i~W~~~d-g~~i~~----------------~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      |.|  .|.|.|++.. |..+..                .++......++     +|.|.++..+      |+|.|+|.|.
T Consensus       157 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~  230 (250)
T 3esu_F          157 GYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSV------DSAVYFCARS  230 (250)
T ss_dssp             STTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------GCEEEEEEEE
T ss_pred             CCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcc------cCEEEEEEEe
Confidence            988  8999998642 322210                01111222111     6999988765      8999999999


Q ss_pred             c
Q psy5697         125 N  125 (145)
Q Consensus       125 N  125 (145)
                      |
T Consensus       231 ~  231 (250)
T 3esu_F          231 G  231 (250)
T ss_dssp             C
T ss_pred             c
Confidence            8

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.99  E-value=3.5e-10  Score=83.86  Aligned_cols=115  Identities=13%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             eeceee-eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEeccCC-C-EEEE
Q psy5697           4 FHISTL-LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTRYEP-S-QLGW   77 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~-P-~i~W   77 (145)
                      ++|..+ ..|++.|.|...+......+... ...+   .....+|.+...++. ..  +..+.|.|.+.|.++ | +|+|
T Consensus        95 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~l~V---~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  170 (233)
T 3bqu_C           95 FTIENMLSEDVADYYCLQSDNLPYTFGGGT-NLEI---KRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKW  170 (233)
T ss_dssp             EC-----CCCCSEEEEEECSSSSCCBCCCC-BC------CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCceeecCCE-EEEE---eCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEE
Confidence            344444 67899999988654332111000 0000   111246777665544 11  223999999999654 3 7999


Q ss_pred             EccCCeEeecc-cCce--EEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          78 RFSNNTVIAYV-KDLR--IALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        78 ~~~dg~~i~~~-~~~~--~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ++ ||..+... ....  ....+|      +|.|.+...+      |.|.|+|.|+|....
T Consensus       171 ~k-~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          171 KI-DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE------RHNSYTCEATHKTST  224 (233)
T ss_dssp             EE-C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHH------TCCCEEEEEEEC---
T ss_pred             EE-CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhC------CCCCEEEEEEeCCCC
Confidence            85 77766432 0000  011223      4667655433      799999999998654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.99  E-value=1.4e-09  Score=79.82  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=53.8

Q ss_pred             eEEEeeE--eccCCCEEEEEcc-CCeEeec---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQ--TRYEPSQLGWRFS-NNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a--~G~P~P~i~W~~~-dg~~i~~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      ++|.|.+  .+.|.|.|+|++. ++..+..         ..+...+..+|+|.|.+++.+      |+|.|+|.|.|..|
T Consensus        17 v~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~------DsG~Y~c~~~n~~g   90 (182)
T 1hnf_A           17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD------DQDIYKVSIYDTKG   90 (182)
T ss_dssp             EEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGG------GCEEEEEEEEETTS
T ss_pred             EEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChh------hCEEEEEEEEeCCC
Confidence            8999964  3567899999851 6666521         123446678999999998765      89999999999999


Q ss_pred             ceE-EEEEEEEec
Q psy5697         129 VIL-SRFVHVKAD  140 (145)
Q Consensus       129 ~~~-s~~v~v~~~  140 (145)
                      ... ++.+.|...
T Consensus        91 ~~~~~~~~~L~V~  103 (182)
T 1hnf_A           91 KNVLEKIFDLKIQ  103 (182)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             ceeEEEEEEEEEc
Confidence            874 355555433

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.98  E-value=5.4e-10  Score=75.02  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=55.6

Q ss_pred             CCCEEEEcCCCCCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          45 HYPFRIKSAPGGNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+|.+...|...+..|  ++|.|.+.+. .+.+.|++ +|+.+.... ......+.+|.|.++..+      |+|.|+|.
T Consensus         4 ~kP~i~~~p~~~v~~G~~VtL~C~~~~~-~~~~~w~k-~g~~~~~~~-~~~~~~~~~l~I~~v~~~------dsG~Y~C~   74 (105)
T 2vsd_A            4 PQPSLSLHPSQGVSLGDTVTLRCHLPRM-AAWVQLWL-NGTLRFDKE-KDKEQDAAEFSFAVTNLE------DAGTYQCR   74 (105)
T ss_dssp             CCCEEEEESCSSCCTTCEEEEEEECCSS-CEEEEEEE-TTEEEEEEE-ECTTCSEEEEEEECCSGG------GCEEEEEE
T ss_pred             CCCEEEeCCCCCcCcCCCEEEEEEcCCC-CcEEEEEE-CCccceeee-ccCCCCEEEEEECCCCHH------HCeEEEEE
Confidence            3577777776644444  9999999886 47899985 776543110 000011237899888765      89999999


Q ss_pred             EEcCCC---ceEEEEEEEE
Q psy5697         123 ASNEAG---VILSRFVHVK  138 (145)
Q Consensus       123 A~N~~G---~~~s~~v~v~  138 (145)
                      +.|...   +..|..+.+.
T Consensus        75 ~~n~~~~~~s~~Sdpl~L~   93 (105)
T 2vsd_A           75 YQVSEPLWTSNQSDPVELV   93 (105)
T ss_dssp             EEEETTEEECCCCCCEEEC
T ss_pred             EEcCCCCcccCCCCCEEEE
Confidence            999753   3345555554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.98  E-value=1.5e-09  Score=83.82  Aligned_cols=109  Identities=16%  Similarity=0.024  Sum_probs=65.7

Q ss_pred             eeceee-eecCceeEeecccc-Cc----ccCCceeeeEEEeccCCCCCCCEEEEcCCCCCccC--eEEEeeEeccCCCEE
Q psy5697           4 FHISTL-LADADTYIIADRSL-FP----RPLGYLVGNIVYSSRSENEHYPFRIKSAPGGNRTR--GLELTRQTRYEPSQL   75 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~-~p----~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~g--~~L~C~a~G~P~P~i   75 (145)
                      |.|..+ ..|++.|.|..... .+    .....+.  ..+.   ....+|.+...|...+..|  ++|.|.+.|. ++++
T Consensus        64 L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~--L~V~---~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~-~~~~  137 (257)
T 1b6u_A           64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLD--IVIT---GLYEKPSLSAQPGPTVLAGESVTLSCSSRSS-YDMY  137 (257)
T ss_dssp             EEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEE--EEEE---CSSCCCEEECSSCTTCBTTCEEEEEEECSSC-CSEE
T ss_pred             EEeecCCcccCEEEEEeEeccCCCccccccCCCEE--Eecc---cCCCCcceEccCCCccCCCCEEEEEEeCCCC-CcEE
Confidence            455544 57889999986432 11    1111222  1111   1234678777776544444  9999999986 4899


Q ss_pred             EEEccCCeEeecccCceEE---eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          76 GWRFSNNTVIAYVKDLRIA---LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        76 ~W~~~dg~~i~~~~~~~~~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .|+| ||+.+.........   ..+++|.|.++.        |+|.|+|.|+|..
T Consensus       138 ~w~k-~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--------D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          138 HLSR-EGEAHERRFSAGPKVNGTFQADFPLGPAT--------HGGTYRCFGSFRD  183 (257)
T ss_dssp             EEEE-TTSSCEECCBCBCCSSSCCBEEEEEEECC--------SCEEEEEEEECSS
T ss_pred             EEEE-CCcccCcccccccccCCceeEEEEecccc--------cCEEEEEEEEcCC
Confidence            9985 77655422111111   124589997763        7999999999864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.98  E-value=7e-10  Score=82.68  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=49.2

Q ss_pred             CeEEEe---eEeccCCCEEEEEccCCeEee--------------cc--cCce-EEeeC--CcEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELT---RQTRYEPSQLGWRFSNNTVIA--------------YV--KDLR-IALSN--GSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C---~a~G~P~P~i~W~~~dg~~i~--------------~~--~~~~-~~~~~--GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .++|.|   .+.|.|.|.|+|+| +|..+.              ..  .+.. .....  .+|.|.++..+      |+|
T Consensus        10 ~v~L~C~~~~v~~~p~~~V~W~k-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G   82 (203)
T 4fa8_A           10 RVTLTSYWRRVSLGPEIEVSWFK-LGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS------HDG   82 (203)
T ss_dssp             CEEEEEECSSTTCSTTSEEEEEE-EETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG------GCE
T ss_pred             CEEEEeeeeccCCCCCcEEEEEE-cCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH------HCe
Confidence            399999   47899999999985 442211              00  0111 11122  37999888765      899


Q ss_pred             EEEEEEEcCCCce-EEEEEEEEe
Q psy5697         118 VYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       118 ~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      .|+|.|+|..|.. .+..+.|..
T Consensus        83 ~Y~C~a~n~~g~~~~~~~l~V~~  105 (203)
T 4fa8_A           83 NYLCRMKLGETEVTKQEHLSVVK  105 (203)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEEEEecC
Confidence            9999999999987 344566654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.98  E-value=1.9e-09  Score=85.07  Aligned_cols=64  Identities=8%  Similarity=-0.020  Sum_probs=49.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .+.|.|.+.|.|.|.|+|++ +|..+        ...+++|.|.++..+      |+|.|+|.|.|..+.. .+..+.|.
T Consensus       113 ~v~l~C~~~~~p~~~v~W~~-~~~~~--------~~~~~~L~i~~v~~~------d~G~Y~C~a~~~~~~~~~~~~l~v~  177 (363)
T 1wio_A          113 SLTLTLESPPGSSPSVQCRS-PRGKN--------IQGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVL  177 (363)
T ss_dssp             CEEEEEECCTTCCCCEEEEC-SSSCE--------EEESSEEEECSBCGG------GCEECEEEEEETTEEEEECCEECEE
T ss_pred             CEEEEEEcCCCCCCeEEEEc-CCCcc--------cccceEEEEeeCChh------cCCEEEEEEecCCCeEEEEEEEEEe
Confidence            38999999999999999985 54332        235679999888765      8999999999987665 33345554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.97  E-value=8.9e-10  Score=81.34  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=41.3

Q ss_pred             CeEEEeeEeccCC---CEEEEEccCCeEeecccCce------EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEP---SQLGWRFSNNTVIAYVKDLR------IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~---P~i~W~~~dg~~i~~~~~~~------~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|.|+   ++|+|++ ||..+.......      ......+|.|.+...      .|.|.|+|.|+|.+|..
T Consensus       108 ~~~L~C~~~~~~p~~~~~i~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~------d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          108 PITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE------DIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             CEEEEEEEEEEBSGGGEEEEEEE-TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGG------GTTCEEEEEEEECSCCC
T ss_pred             CEEEEEEECCcCCCCCeEEEEEe-CCeECcccccccccCcCcceEEEEEEEEEeeec------cCCCeEEEEEEccccCC
Confidence            3899999998754   4899984 777765321100      011122456655432      27899999999999873

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.97  E-value=4.9e-10  Score=82.67  Aligned_cols=72  Identities=8%  Similarity=-0.060  Sum_probs=49.5

Q ss_pred             cCeEEEeeEeccCCCEEEEEcc--CCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697          59 TRGLELTRQTRYEPSQLGWRFS--NNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus        59 ~g~~L~C~a~G~P~P~i~W~~~--dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                      ..+.|.|.+.| |.|.|+|++.  ||..+.... ......+++|.|.++..+      |+|.|+|.|.|..+...+..+.
T Consensus        25 ~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~-~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~n~~~~~~s~~~~   96 (213)
T 2x1w_L           25 KTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN-RISWDSKKGFTIPSYMIS------YAGMVFCEAKINDESYQSIMYI   96 (213)
T ss_dssp             CEEEECCCBSS-TTCCEEEEEETTTEEECCCSS-SCEEETTTEEEEEGGGTT------TCSEEEEEEC----CEECCCEE
T ss_pred             ccEEEeeccCC-CCcEEEEEhhcCCCccccCCC-cccccCCccEEEccCChh------cCceEEEEEEECCeeEEEEEEE
Confidence            33899999988 8899999875  677665432 223445678999988766      8999999999976665554344


Q ss_pred             EE
Q psy5697         137 VK  138 (145)
Q Consensus       137 v~  138 (145)
                      |.
T Consensus        97 l~   98 (213)
T 2x1w_L           97 VV   98 (213)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.97  E-value=5.5e-09  Score=77.73  Aligned_cols=115  Identities=12%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             eecCceeEeeccccCc---ccCCceeeeEEEe-ccCCCCCCCEEEE-cCCCCCcc--CeEEEeeEecc-CCC-EEEEEcc
Q psy5697          10 LADADTYIIADRSLFP---RPLGYLVGNIVYS-SRSENEHYPFRIK-SAPGGNRT--RGLELTRQTRY-EPS-QLGWRFS   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~-~~~~~~~~P~~i~-~p~~~~~~--g~~L~C~a~G~-P~P-~i~W~~~   80 (145)
                      ..|.++|.|.......   ..  ..++..+.- .......+|.+.. .|......  .+.|.|.+.|. |.| +|+|++.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~--~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPN--DYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCE--EEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             HHHCEEEEEEEeccccCcccc--eeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            6788899888754310   00  012111110 1112234565543 34332223  38999999998 877 9999865


Q ss_pred             CCeEeec---ccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          81 NNTVIAY---VKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        81 dg~~i~~---~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ||..+..   .+..   .......+|.|.+...    ...|.|.|+|.|+|..|..
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~----~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDV----AQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             TSCBCSCEEECCCEEETTEEEEEEEEEEECTTT----TSTTCCEEEEEEECTTCCE
T ss_pred             CCCccceeEECCccccCCeEEEEEEEEEcHHHh----ccCCCCEEEEEEEeCCCCC
Confidence            8877643   1100   0011123466654321    0026899999999999975

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.97  E-value=1.1e-09  Score=80.08  Aligned_cols=75  Identities=8%  Similarity=0.012  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCc-eEE--eeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          45 HYPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIA--LSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        45 ~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~--~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+|.|...|....  +..++|.|.+.+ |.|.|+|+| ||..+...... ...  ..+++|.|.++..+      |+|.|
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y   78 (201)
T 1nkr_A            7 RKPSLLAHPGPLVKSEETVILQCWSDV-MFEHFLLHR-EGMFNDTLRLIGEHHDGVSKANFSISRMTQD------LAGTY   78 (201)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEEESS-CCSEEEEEE-ESSSCEEEEEECEEETTEEEEEEEESSCCGG------GCEEE
T ss_pred             CCCeEEEEcCCccCCCCcEEEEEeccC-CCCEEEEEE-CCCcCCcceeeeecCCCCceEEEEeccCCcc------cCeEE
Confidence            4677777776433  233999999985 889999985 66554311100 011  23568999888765      89999


Q ss_pred             EEEEEcCC
Q psy5697         120 RCRASNEA  127 (145)
Q Consensus       120 ~C~A~N~~  127 (145)
                      +|.|.|..
T Consensus        79 ~C~a~~~~   86 (201)
T 1nkr_A           79 RCYGSVTH   86 (201)
T ss_dssp             EEEEEBTT
T ss_pred             EEeEecCC
Confidence            99999863

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.97  E-value=4.3e-09  Score=79.21  Aligned_cols=62  Identities=11%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEeeC-----CcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALSN-----GSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.|  .|.|.|++.+ +..+.                ..++......+     .+|.|.++..+      |
T Consensus       151 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D  224 (256)
T 3ux9_B          151 SLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAE------D  224 (256)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             eEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChh------h
Confidence            399999999988  8999998743 32221                00111122211     14999988765      8


Q ss_pred             CeEEEEEEEcCC
Q psy5697         116 STVYRCRASNEA  127 (145)
Q Consensus       116 ~G~Y~C~A~N~~  127 (145)
                      +|.|+|.|.|..
T Consensus       225 sG~Y~C~~~~~~  236 (256)
T 3ux9_B          225 TAVYYCARYIDF  236 (256)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CEEEEEEEEcCC
Confidence            999999999974

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.96  E-value=5.3e-10  Score=82.79  Aligned_cols=79  Identities=14%  Similarity=0.244  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCC-C--CccCeEEEeeEeccCCC--EEEEEccCCeEeecccCc--eEEeeCC------cEEEcCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-G--NRTRGLELTRQTRYEPS--QLGWRFSNNTVIAYVKDL--RIALSNG------SLMFPPFPETGFR  111 (145)
Q Consensus        45 ~~P~~i~~p~~-~--~~~g~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~--~~~~~~G------sL~i~~~~~~~~~  111 (145)
                      .+|.+...++. .  .+..+.|.|.+.|.++|  +|+|++ ||..+......  .....+|      +|.|.+...+   
T Consensus       134 ~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~---  209 (234)
T 2j6e_L          134 AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKA-DGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK---  209 (234)
T ss_dssp             CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEE-TTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTT---
T ss_pred             CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEE-CCEECCCCccccCceECCCCCEEEEEEEEECHHHcC---
Confidence            45655544433 1  12248999999996543  999985 88877532100  0111222      4666655433   


Q ss_pred             CCCCCeEEEEEEEcCCCce
Q psy5697         112 PDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~  130 (145)
                         |+|.|+|.|+|..+..
T Consensus       210 ---d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          210 ---SHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             ---TSCCEEEEEEBTTBCC
T ss_pred             ---CCCeEEEEEEeCCCce
Confidence               8999999999998764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.96  E-value=3.9e-09  Score=79.07  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=59.8

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccC------CCCCCCEEEEcCCC-CCcc--CeEEEeeEeccC--CCEEEEE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRS------ENEHYPFRIKSAPG-GNRT--RGLELTRQTRYE--PSQLGWR   78 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~------~~~~~P~~i~~p~~-~~~~--g~~L~C~a~G~P--~P~i~W~   78 (145)
                      ..|+++|.|...+..+...+...--.|.....      ....++.++..++. ....  .+.|.|.+.|.|  .|.|.|+
T Consensus        85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  164 (247)
T 1svz_A           85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWV  164 (247)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred             HHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEE
Confidence            57888999988664332111100000111100      00123444444443 3333  399999999986  5799998


Q ss_pred             ccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          79 FSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        79 ~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.+ |..+.                ..++......     .++|.|.++..+      |+|.|.|.|.|.
T Consensus       165 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~a~n~  228 (247)
T 1svz_A          165 KQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE------DTATYFCVRDRH  228 (247)
T ss_dssp             EECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG------GCEEEEEEEEEG
T ss_pred             EeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChh------HCEEEEEEEecc
Confidence            743 22110                0011112211     238999988765      899999999996

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.96  E-value=5.2e-10  Score=82.19  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             CeEEEeeEeccCC-CEEEEEccCC--e--Eeec----c---cCceE----------EeeCCcEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELTRQTRYEP-SQLGWRFSNN--T--VIAY----V---KDLRI----------ALSNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C~a~G~P~-P~i~W~~~dg--~--~i~~----~---~~~~~----------~~~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .+.|.|.+.|.|. |.|+|++.+.  .  .+..    .   .....          ...+|+|.|.++..+      |+|
T Consensus        17 ~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~------D~G   90 (231)
T 2pet_A           17 SVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVG------DER   90 (231)
T ss_dssp             CEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGG------GCE
T ss_pred             CEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcc------cCc
Confidence            3999999999995 9999986432  2  2210    0   11112          455678999988765      899


Q ss_pred             EEEEEEEcCC-Cce-EEEEEEEEeccC
Q psy5697         118 VYRCRASNEA-GVI-LSRFVHVKADSR  142 (145)
Q Consensus       118 ~Y~C~A~N~~-G~~-~s~~v~v~~~~~  142 (145)
                      .|+|.|.|.. |.. .+..+.|...+.
T Consensus        91 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~  117 (231)
T 2pet_A           91 DYVCVVRAGAAGTAEATARLNVFAKPE  117 (231)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEEEBCCC
T ss_pred             eEEEEEEecCCCceEEEEEEEEEecCC
Confidence            9999999998 554 333555554443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.96  E-value=1.1e-09  Score=87.87  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             eecCceeEeeccccCcc-cCCceeeeEE-EeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEecc-CCC-EEEEEccCC
Q psy5697          10 LADADTYIIADRSLFPR-PLGYLVGNIV-YSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRY-EPS-QLGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~-~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~-P~P-~i~W~~~dg   82 (145)
                      ..|++.|.|...+.... ... .+|..+ .........+|.+...++. ....|  +.|.|.+.|. |.| +|+|+ +||
T Consensus       306 ~~D~G~Y~C~a~n~~~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~-~~g  383 (438)
T 1qgc_4          306 SADTAMYYCVRREDGGDEGFA-YWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWN-SGS  383 (438)
T ss_dssp             GGGCCEEEEEECCSSSCCCCC-SBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEG-GGT
T ss_pred             hhhCEEEEEEEEccCCCccce-eeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEe-cCC
Confidence            57888999988652110 000 011100 0111122356765555443 22233  8999999998 988 99996 577


Q ss_pred             eEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          83 TVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..+...... ....+|      .|.|.+...+      | |.|+|.|+|++|..
T Consensus       384 ~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~------d-g~Y~C~a~n~~g~~  429 (438)
T 1qgc_4          384 LSSGVHTFP-AVLQSDLYTLSSSVTVPSSTWP------S-ETVTCNVAHPASST  429 (438)
T ss_dssp             CCSSEEECC-CEEETTEEEEEEEEEEEEEHHH------H-SCCEEEEEEGGGTE
T ss_pred             CCCceeecC-ccccCCcEEEEEEEEEehhhcC------C-ceEEEEEEeCCCCc
Confidence            765421111 111234      4777655332      6 99999999999985

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=94.74  Aligned_cols=90  Identities=12%  Similarity=0.051  Sum_probs=61.9

Q ss_pred             CCCEEEEcCCC-CCccC--eEEEeeEeccCCCEEE-EEc-cCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLG-WRF-SNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~-W~~-~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      .+|.|. .|++ .+..|  +.|.|.|.|+|.|.|+ |++ +||..+.... ...+.   ..++|.|.++...      |+
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~------d~  235 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTSSRRFIASFNVVNTTKR------DA  235 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE-EEECCSSEEEEEEEECSCCTT------TC
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc-eEEeccccceEEEEEcccccc------cC
Confidence            567777 4555 23333  9999999999999998 864 5887765321 11111   1368999888765      89


Q ss_pred             eEEEEEEEcCCCce--EEEEEEEEeccC
Q psy5697         117 TVYRCRASNEAGVI--LSRFVHVKADSR  142 (145)
Q Consensus       117 G~Y~C~A~N~~G~~--~s~~v~v~~~~~  142 (145)
                      |.|+|.|.|.+|..  ....+.|...+.
T Consensus       236 g~Y~c~A~n~~G~~~s~~~~l~V~~~P~  263 (731)
T 2v5y_A          236 GKYRCMIRTEGGVGISNYAELVVKEPPV  263 (731)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred             eEEEEEEECCCCCcceeeEEEEEecCCC
Confidence            99999999999983  334566654433

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.94  E-value=3e-09  Score=83.74  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEE-EeccCCCCCCCEEEEcCCC-CCccC--eEEEeeEecc-CC-CEEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIV-YSSRSENEHYPFRIKSAPG-GNRTR--GLELTRQTRY-EP-SQLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G~-P~-P~i~W~~~dg~   83 (145)
                      ..|++.|.|.......     .++..+ .........+|.+...+++ ....|  +.|.|.+.|. |. |+|+|+ +||.
T Consensus        88 ~~D~G~Y~C~~~n~~~-----~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~-k~g~  161 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMA-----YWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN-SGAL  161 (344)
T ss_dssp             GGGCEEEEEEETTTTC-----EECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEET-TTTB
T ss_pred             cccCEEEEEEEecCcc-----eecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEe-cCCc
Confidence            6688888888765211     111111 0111122356765544433 33333  8999999998 64 799996 5776


Q ss_pred             EeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+...........+|      +|.|.++..+      | |.|+|.|+|..|..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNT  207 (344)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEETTHHH------H-BCEEEEEEEGGGTE
T ss_pred             cCceeECCCeECCCCCEEEEEEEEEcHHHcC------C-CcEEEEEEeCCCCc
Confidence            532100001111223      6777655332      6 99999999999874

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.94  E-value=1.4e-08  Score=76.11  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=64.6

Q ss_pred             eecCceeEeeccc--c-CcccCCceeeeEEEe-ccCCCCCCCEEE-EcCCCC--Cc-cCeEEEeeEecc-CCC-EEEEEc
Q psy5697          10 LADADTYIIADRS--L-FPRPLGYLVGNIVYS-SRSENEHYPFRI-KSAPGG--NR-TRGLELTRQTRY-EPS-QLGWRF   79 (145)
Q Consensus        10 ~~~~~~~~~~~~~--~-~p~~~~~~~~~~~~~-~~~~~~~~P~~i-~~p~~~--~~-~g~~L~C~a~G~-P~P-~i~W~~   79 (145)
                      ..|.++|.|....  - .+...  .+|..+.- .......+|.+. ..|...  .+ ..+.|.|.+.|. |.| +|+|++
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~--~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~  164 (232)
T 1dn0_B           87 AADTAVYYCARPPHDTSGHYWN--YWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKY  164 (232)
T ss_dssp             GGGCEEEEEEECSSTTSCSCCS--EECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred             cccCEEEEEEEecCCcCCchhh--hcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence            6788899998752  1 11100  12211111 011123456544 344432  23 348999999986 887 999986


Q ss_pred             cCCeEeecc---cCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy5697          80 SNNTVIAYV---KDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVH  136 (145)
Q Consensus        80 ~dg~~i~~~---~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~  136 (145)
                      .||..+...   +...   ......+|.|.+...    ...|.|.|.|.|+|..|.. ....+.
T Consensus       165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~----~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDV----MAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC-------CCCEEEEEEECTTCCEEEEEECC
T ss_pred             CCCCceeeEEECCccccCCcEEEEEEEEEcHHHh----cccCCCeEEEEEEeCCCCcceeEecC
Confidence            588776431   1000   111123577755431    0026899999999999986 433333

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.94  E-value=1.8e-09  Score=78.81  Aligned_cols=66  Identities=11%  Similarity=0.133  Sum_probs=45.3

Q ss_pred             CeEEEeeEeccC---CCEEEEEccC-CeEee-----------cccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYE---PSQLGWRFSN-NTVIA-----------YVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P---~P~i~W~~~d-g~~i~-----------~~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+.|.|.+.|.|   .|.|+|++.+ |..+.           ..+..... ..++  +|.|.++..+      |+|.|+|
T Consensus        17 ~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C   90 (212)
T 1q0x_L           17 TVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTE------DEAIYFC   90 (212)
T ss_dssp             CEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEE
T ss_pred             CEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCcc------CCEEEEE
Confidence            399999999998   4899998643 33321           11111222 2222  8999988765      8999999


Q ss_pred             EEEcCCCceE
Q psy5697         122 RASNEAGVIL  131 (145)
Q Consensus       122 ~A~N~~G~~~  131 (145)
                      .|.|..|...
T Consensus        91 ~~~~~~~~~~  100 (212)
T 1q0x_L           91 ALWSNNKLVF  100 (212)
T ss_dssp             EEECSSCEEE
T ss_pred             EEecCchhhc
Confidence            9999987543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.94  E-value=2.6e-09  Score=78.82  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=50.8

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeEe---e--------cccCceEE-e--eCCcEEEcCCCCC
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTVI---A--------YVKDLRIA-L--SNGSLMFPPFPET  108 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~i---~--------~~~~~~~~-~--~~GsL~i~~~~~~  108 (145)
                      +.+.+.|.. ..  +..+.|.|.+.|.|.|.|.|++.+ |...   .        ........ .  .+++|.|.++..+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            445555554 22  333999999999999999998743 2111   0        00111111 1  2347999988765


Q ss_pred             CCCCCCCCeEEEEEEEcCCCce
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                            |+|.|+|.|.|..|..
T Consensus       105 ------D~G~Y~C~~~~~~~~~  120 (237)
T 3sob_L          105 ------DFATYYCQQSYTTPPT  120 (237)
T ss_dssp             ------GCEEEEEEECSSSSCE
T ss_pred             ------hCeEEEEeeccCCceE
Confidence                  8999999999988754

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.93  E-value=3.1e-09  Score=71.62  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=42.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee---------cccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA---------YVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~---------~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .+.|.|.+.+.+ +.|.|++.+ |..+.         ...+......++      +|.|.++..+      |+|.|.|.+
T Consensus        18 ~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~   90 (113)
T 1h5b_A           18 DSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE------DSGTYFCAA   90 (113)
T ss_dssp             CEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG------GCEEEEEEE
T ss_pred             cEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChh------hCEEEEEEE
Confidence            399999999865 799998754 22111         111222222222      8999988765      899999999


Q ss_pred             EcCCC
Q psy5697         124 SNEAG  128 (145)
Q Consensus       124 ~N~~G  128 (145)
                      .|..|
T Consensus        91 ~n~~~   95 (113)
T 1h5b_A           91 EASSG   95 (113)
T ss_dssp             ECSSS
T ss_pred             ecCCC
Confidence            99887

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.93  E-value=1e-08  Score=74.19  Aligned_cols=73  Identities=23%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccCC----eEee-------------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNN----TVIA-------------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg----~~i~-------------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+.|.|.+.|.|.+.|+|++.+.    ..+.             ...+...+..+|+|.|.++..+      |+|.|+|.
T Consensus        16 ~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~------D~G~Y~C~   89 (208)
T 3r4d_A           16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK------DMGVYTLD   89 (208)
T ss_dssp             CEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG------GCEEEEEE
T ss_pred             cEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc------CCeEEEEE
Confidence            39999999999999999986421    1110             0112234556789999988765      89999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy5697         123 ASNEAGVILSRFVHVK  138 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~  138 (145)
                      +.|..+...+..+.+.
T Consensus        90 ~~~~~~~~~~~~~~l~  105 (208)
T 3r4d_A           90 MTDENYRRTQATVRFH  105 (208)
T ss_dssp             EECSSCEEEEEEEEEE
T ss_pred             EEcccCceeEEEEEEE
Confidence            9999765444444433

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.93  E-value=5e-09  Score=75.55  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CeEEEeeEeccC----CCEEEEEcc---------------CCeEeec----ccCceEEe------eCCcEEEcCCCCCCC
Q psy5697          60 RGLELTRQTRYE----PSQLGWRFS---------------NNTVIAY----VKDLRIAL------SNGSLMFPPFPETGF  110 (145)
Q Consensus        60 g~~L~C~a~G~P----~P~i~W~~~---------------dg~~i~~----~~~~~~~~------~~GsL~i~~~~~~~~  110 (145)
                      .+.|.|.+.|.|    .|.|+|++.               +|..+..    ..+.....      .+++|.|.++..+  
T Consensus        17 ~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~--   94 (214)
T 3jz7_A           17 TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS--   94 (214)
T ss_dssp             CEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGG--
T ss_pred             CEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCChh--
Confidence            399999999988    579999863               3333321    11222222      2468999988765  


Q ss_pred             CCCCCCeEEEEEEEcCCCce-EEEEEEEEeccCC
Q psy5697         111 RPDVHSTVYRCRASNEAGVI-LSRFVHVKADSRI  143 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~~~~  143 (145)
                          |+|.|+|.|.|..|.. .+..+.|...+.+
T Consensus        95 ----D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  124 (214)
T 3jz7_A           95 ----DIGTYQCKVKKAPGVANKKFLLTVLVKPSG  124 (214)
T ss_dssp             ----GCEEEEEEEEETTEEEEEEEEEEEECCCBS
T ss_pred             ----hCeEEEEEEEeCCCccccEEEEEEEcCCCC
Confidence                8999999999999976 4445666544433

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.93  E-value=2.1e-09  Score=77.68  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeec-----------ccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAY-----------VKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~-----------~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .++|.|.+.+ |.|.|+|++ ++..+..           .++.... ..+|+|.|.+++.+      |+|.|+|.|.|..
T Consensus        12 ~VtL~c~~~~-~~~~i~W~~-~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~------DsG~Y~C~~~n~~   83 (171)
T 1ccz_A           12 NVTFHVPSNV-PLKEVLWKK-QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS------DEDEYEMESPNIT   83 (171)
T ss_dssp             CEEECCCCSS-CCSCEEEEE-TTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGG------GCEEEEEECTTCC
T ss_pred             CEEEcCCCCC-CcceEEEEe-CCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChh------hCceEEEEEeCCC
Confidence            3999999955 999999986 4443321           1111122 36789999988765      8999999999999


Q ss_pred             CceEEEEEEEEec
Q psy5697         128 GVILSRFVHVKAD  140 (145)
Q Consensus       128 G~~~s~~v~v~~~  140 (145)
                      | .....+.|...
T Consensus        84 ~-~~~~~L~V~~~   95 (171)
T 1ccz_A           84 D-TMKFFLYVLEM   95 (171)
T ss_dssp             S-CEEEEEEEECC
T ss_pred             C-cEEEEEEEECc
Confidence            9 33335555543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.92  E-value=6.1e-09  Score=80.02  Aligned_cols=69  Identities=9%  Similarity=0.004  Sum_probs=45.9

Q ss_pred             eEEEee-EeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697          61 GLELTR-QTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus        61 ~~L~C~-a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                      +.|.|. +.|+|.|+|+|+ +||..+......   ......+.|.|.++...      |.|.|+|.|+|..|.. .+..+
T Consensus       132 ~~l~C~~~~g~P~~~i~W~-~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~------d~g~Y~C~a~n~~~~~~~~~~~  204 (308)
T 4fom_A          132 VAAICIAATGKPVAHIDWE-GDLGEMESTTTSFPNETATIISQYKLFPTRFA------RGRRITCVVKHPALEKDIRYSF  204 (308)
T ss_dssp             EEEEEEEEEEBSCCEEEEC-CCSSBCCEEEEECTTSCEEEEEEEEECCCGGG------TTCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEEEecCCcCCceEEEE-ECCcccccccceeeeecccccccceEEeeeec------CCccEEEEEEccCCCCceEEeE
Confidence            899997 579999999997 466665421100   01111235788766543      8999999999998875 44444


Q ss_pred             E
Q psy5697         136 H  136 (145)
Q Consensus       136 ~  136 (145)
                      .
T Consensus       205 ~  205 (308)
T 4fom_A          205 I  205 (308)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.91  E-value=2.1e-09  Score=76.99  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CeEEEee-EeccCC-CEEEEEccCCeEeec--ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTR-QTRYEP-SQLGWRFSNNTVIAY--VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~-a~G~P~-P~i~W~~~dg~~i~~--~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|. +.|.|. |.|+|++ ++..+..  .........+++|.|.++..+      |+|.|+|.|.|..|..
T Consensus        25 ~v~L~C~~~~~~p~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           25 GMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDKRRFVSQTNGNLYIANVEAS------DKGNYSCFVSSPSITK   92 (201)
T ss_dssp             CEEECCCCCSEESSCCEEEEEE-SSTTCBCCCSSSEEECTTTCCEEESSCCGG------GCEEEEEEEEEGGGTE
T ss_pred             CEEEeccccccCCCceEEEEEE-CCceeeeeeCCCeEEEcCCCeEEECcCCcc------cCeEEEEEEEecCCCc
Confidence            3999999 999999 9999985 5555431  122223345779999988765      8999999999987765

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.91  E-value=3.1e-09  Score=79.62  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCceEEee-C--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDLRIALS-N--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~~~~~~-~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.|.|.|.|.|++.+ +..   +.        ..++...... +  .+|.|.++..+      |+|.|.|.|.
T Consensus        21 ~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   94 (250)
T 3esu_F           21 RVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE------DIGTYFCQQG   94 (250)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             cEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh------hCEEEEEEEe
Confidence            3999999999999999998743 111   10        0111111111 2  27999988765      8999999999


Q ss_pred             cCCCceE
Q psy5697         125 NEAGVIL  131 (145)
Q Consensus       125 N~~G~~~  131 (145)
                      |..|...
T Consensus        95 n~~~~~~  101 (250)
T 3esu_F           95 NTLPWTF  101 (250)
T ss_dssp             SSSSCEE
T ss_pred             eCCCceE
Confidence            9977653

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.90  E-value=4e-09  Score=73.87  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=48.0

Q ss_pred             EEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE---eecccCceEEeeCC---cEEEcCCCCCCCCCCCCCe
Q psy5697          48 FRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV---IAYVKDLRIALSNG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        48 ~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      .+++.|.. ..  +..+.|.|.+.|.  +.+.|++.+ |+.   +...++......++   +|.|.++..+      |+|
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~------DsG   90 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYE------DNG   90 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGG------GCE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChH------HCE
Confidence            45566655 22  2339999999998  999999753 322   11112222222233   5999988765      899


Q ss_pred             EEEEEEEcCCC
Q psy5697         118 VYRCRASNEAG  128 (145)
Q Consensus       118 ~Y~C~A~N~~G  128 (145)
                      .|.|.|.|..|
T Consensus        91 ~Y~C~a~n~~g  101 (133)
T 3khq_A           91 IYFCKQKCDSA  101 (133)
T ss_dssp             EEEEEESSCC-
T ss_pred             EEEEEEEeCCC
Confidence            99999999987

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.90  E-value=3e-09  Score=79.10  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             CeEEEeeEeccC----CCEEEEEccC-CeE---eec--------ccCceEEe-eCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYE----PSQLGWRFSN-NTV---IAY--------VKDLRIAL-SNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P----~P~i~W~~~d-g~~---i~~--------~~~~~~~~-~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.|.|    .|.|.|++.+ |..   +..        .+...... .++  +|.|.++..+      |+|.|+
T Consensus        18 ~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~   91 (240)
T 1moe_A           18 RATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD------DVATYY   91 (240)
T ss_dssp             CEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChh------hCEEEE
Confidence            399999999999    8999998743 221   110        01111221 222  7999988765      899999


Q ss_pred             EEEEcCCCceE--EEEEEEE
Q psy5697         121 CRASNEAGVIL--SRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~~--s~~v~v~  138 (145)
                      |.|.|..|...  ...+.|.
T Consensus        92 C~~~n~~~~~~~~~~~l~V~  111 (240)
T 1moe_A           92 CQQTNEDPYTFGGGTKLEIK  111 (240)
T ss_dssp             EEECSSSSCCBCCCEEEEEC
T ss_pred             EEEccCCceeecCCEEEEEe
Confidence            99999977643  2344544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.90  E-value=1.1e-09  Score=78.15  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+|.+...|.. ....  .+.|.|.+.|.|.| .|+|++ ||..+..        .+++|.|.++..+      |+|.|+
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~~~~~--------~~~~L~i~~v~~~------d~G~Y~   67 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSEE--------TNSSLNIVNAKFE------DSGEYK   67 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEE-TTEECSC--------CSSEEEECSCCGG------GCEEEE
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEE-CCeECCC--------CceEEEEecccee------cCEEEE
Confidence            35667777766 2233  39999999999987 699974 7766532        3568999888665      899999


Q ss_pred             EEEEcCCCce
Q psy5697         121 CRASNEAGVI  130 (145)
Q Consensus       121 C~A~N~~G~~  130 (145)
                      |.|.|..++.
T Consensus        68 C~~~~~~~s~   77 (176)
T 1f2q_A           68 CQHQQVNESE   77 (176)
T ss_dssp             EECTTSSCCC
T ss_pred             EEcCCccccc
Confidence            9999987754

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.90  E-value=4.5e-09  Score=80.60  Aligned_cols=79  Identities=13%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCceEEeeCC---cEEEcCCCC
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDLRIALSNG---SLMFPPFPE  107 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~~~~~~~G---sL~i~~~~~  107 (145)
                      .+.+.+.|.+ .+..  .++|.|.+.|.|.|.|.|++.+ +.   .+..        .+.......++   +|.|.++..
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3456666665 2333  3999999999999999998743 21   1211        11122222222   899998876


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCce
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +      |+|.|+|.|.|..|..
T Consensus        92 ~------DsG~Y~C~~~n~~~~~  108 (276)
T 3auv_A           92 E------DFATYYCQQHYTTPPT  108 (276)
T ss_dssp             G------GCEEEEEEECSSSSCC
T ss_pred             h------hCEEEEEEEecCCccc
Confidence            5      8999999999987653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.89  E-value=3e-09  Score=77.61  Aligned_cols=63  Identities=10%  Similarity=0.153  Sum_probs=44.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee---c--------ccCceE---EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA---Y--------VKDLRI---ALSNGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~---~--------~~~~~~---~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+.|.|.|.|+|++.+ |....   .        ..+...   ...+++|.|.++..+      |+|.|+|.|.
T Consensus        17 ~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   90 (213)
T 3mj8_L           17 KATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG------DEADYYCQSW   90 (213)
T ss_dssp             CEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEE
T ss_pred             CEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh------hCEEEEEEec
Confidence            3999999999999999998732 22111   0        111111   122347999988765      8999999999


Q ss_pred             cCCC
Q psy5697         125 NEAG  128 (145)
Q Consensus       125 N~~G  128 (145)
                      |..|
T Consensus        91 ~~~~   94 (213)
T 3mj8_L           91 DGTN   94 (213)
T ss_dssp             ETTT
T ss_pred             cCCc
Confidence            9998

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.89  E-value=5.5e-09  Score=69.46  Aligned_cols=74  Identities=15%  Similarity=0.073  Sum_probs=46.6

Q ss_pred             CeEEEeeE-eccCCCE----EEEEccCCeE-ee----------cccCceEEee--------CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQ-TRYEPSQ----LGWRFSNNTV-IA----------YVKDLRIALS--------NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~----i~W~~~dg~~-i~----------~~~~~~~~~~--------~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+ .+.|.+.    |.|++.+... +.          ...+......        +++|.|.+++.+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~------D   90 (118)
T 3udw_C           17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE------D   90 (118)
T ss_dssp             CEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGG------G
T ss_pred             cEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChH------H
Confidence            39999999 6666554    9998752111 10          0011122222        568999988766      8


Q ss_pred             CeEEEEEEEc-CCCce-EEEEEEEEe
Q psy5697         116 STVYRCRASN-EAGVI-LSRFVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N-~~G~~-~s~~v~v~~  139 (145)
                      +|.|.|.+.| ..|.. ....+.|.+
T Consensus        91 ~G~Y~C~v~~~~~~~~~~~~~L~V~~  116 (118)
T 3udw_C           91 EGNYTCLFVTFPQGSRSVDIWLRVLA  116 (118)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CeEEEEEEEECCCCCccceEEEEEEe
Confidence            9999999999 67754 333455543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.89  E-value=1.6e-08  Score=74.74  Aligned_cols=64  Identities=13%  Similarity=0.036  Sum_probs=43.9

Q ss_pred             eEEEeeEeccCCC---EEEEEccCC----------eEeeccc-----CceEEe------eCCcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS---QLGWRFSNN----------TVIAYVK-----DLRIAL------SNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P---~i~W~~~dg----------~~i~~~~-----~~~~~~------~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.+.|.|.|   .|+|+|.+.          ..+....     ......      .+++|.|.++..+      |+
T Consensus        22 v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~------D~   95 (226)
T 4f80_A           22 ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS------DS   95 (226)
T ss_dssp             EEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG------GC
T ss_pred             EEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH------HC
Confidence            9999999998876   799986432          2211110     011111      1237999988765      89


Q ss_pred             eEEEEEEEcCCCce
Q psy5697         117 TVYRCRASNEAGVI  130 (145)
Q Consensus       117 G~Y~C~A~N~~G~~  130 (145)
                      |.|+|.|.|..|..
T Consensus        96 G~Y~C~a~n~~~~~  109 (226)
T 4f80_A           96 GKYLCYFQDGDFYE  109 (226)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             eeEEEEEECCCcEE
Confidence            99999999998876

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.89  E-value=4.8e-09  Score=78.82  Aligned_cols=76  Identities=12%  Similarity=-0.006  Sum_probs=49.3

Q ss_pred             EEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceEE-eeC--CcEEEcCCCCCCC
Q psy5697          49 RIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRIA-LSN--GSLMFPPFPETGF  110 (145)
Q Consensus        49 ~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~--GsL~i~~~~~~~~  110 (145)
                      +.+.|.+ .+  +..++|.|.+.|.|.|.|.|++.+ |..   +..        ..+.... ..+  ++|.|.++..+  
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~--   81 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE--   81 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG--
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH--
Confidence            4455554 22  233999999999999999998743 221   110        1111122 122  37999988765  


Q ss_pred             CCCCCCeEEEEEEEcCCCce
Q psy5697         111 RPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~  130 (145)
                          |+|.|.|.|.|..+..
T Consensus        82 ----D~G~Y~C~~~n~~~~~   97 (242)
T 2znx_A           82 ----DFGMYFCQQSNSXPYT   97 (242)
T ss_dssp             ----GCEEEEEEECSSSSCE
T ss_pred             ----HCEEEEEeEecCCceE
Confidence                8999999999986643

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.89  E-value=5.7e-09  Score=77.93  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEE-eccCCCCCCCEEEE-cCCCCC--ccCeEEEeeEecc-CCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVY-SSRSENEHYPFRIK-SAPGGN--RTRGLELTRQTRY-EPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~P~~i~-~p~~~~--~~g~~L~C~a~G~-P~P-~i~W~~~dg~   83 (145)
                      ..|+++|.|........    .+|..+. ........+|.+.. .|....  +..+.|.|.+.|. |.| +|+|+ +||.
T Consensus        88 ~~D~G~Y~C~~~~~~~~----~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-~~g~  162 (227)
T 1mju_H           88 SDDSAVYYCANKLGWFP----YWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWN-SGSL  162 (227)
T ss_dssp             GGGCEEEEEEEEETTEE----EECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEG-GGTB
T ss_pred             cccCEEEEEEECCCCce----EEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEe-cCCC
Confidence            57888888877543211    1111110 00111234565544 343322  2338999999996 877 99996 4666


Q ss_pred             Eeec--ccCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIAY--VKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~~--~~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+..  .+...   .....++|.|.+...+      | |.|+|.|+|..+..
T Consensus       163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------~-g~Y~C~a~n~~~~~  207 (227)
T 1mju_H          163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWP------S-QSITCNVAHPASST  207 (227)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECTTTTT------T-SCCEEEEEEGGGTE
T ss_pred             cCCcEECCceecCCeEEEEEEEEEchhhcC------C-CeEEEEEEECCCCc
Confidence            5321  11110   1112336777654322      5 99999999987653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.88  E-value=3.3e-09  Score=78.72  Aligned_cols=64  Identities=8%  Similarity=-0.002  Sum_probs=45.2

Q ss_pred             CeEEEeeEec---cCCCEEEEEccCCeEe-----------------------------ecccCceEEee--CCcEEEcCC
Q psy5697          60 RGLELTRQTR---YEPSQLGWRFSNNTVI-----------------------------AYVKDLRIALS--NGSLMFPPF  105 (145)
Q Consensus        60 g~~L~C~a~G---~P~P~i~W~~~dg~~i-----------------------------~~~~~~~~~~~--~GsL~i~~~  105 (145)
                      .+.|.|.+.|   .|.|.|+|++. +...                             ....+......  +++|.|.++
T Consensus        19 ~v~L~C~~~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v   97 (250)
T 2fbo_J           19 TVELPCSYQLANDTQPPVISWLKG-ASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHV   97 (250)
T ss_dssp             CEEECCEEEECSCCSCCEEEEEEE-EETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEEECSC
T ss_pred             eEEEEEEeEcCCCCCceEEEEEeC-CCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEEEeeC
Confidence            3999999998   99999999864 3221                             00111112222  358999988


Q ss_pred             CCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697         106 PETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       106 ~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..+      |+|.|+|.|.|..|..
T Consensus        98 ~~~------D~G~Y~C~~~~~~~~~  116 (250)
T 2fbo_J           98 HPQ------DGGRYWCQVAQWSIRT  116 (250)
T ss_dssp             CGG------GCEEEEEEEECTTCCS
T ss_pred             Chh------hCeEEEEEeccCccCC
Confidence            765      8999999999998854

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.88  E-value=1.9e-09  Score=80.65  Aligned_cols=110  Identities=14%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEEE-EcCCCC-C--ccCeEEEeeEeccCCC--EEEEEcc
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFRI-KSAPGG-N--RTRGLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~i-~~p~~~-~--~~g~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      ..|+++|.|......... ...++.   ..+........+|.+. ..|... .  +..+.|.|.+.|.|+|  +|+|++ 
T Consensus        86 ~~D~G~Y~C~~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-  163 (246)
T 4dzb_B           86 PEDSSFYICSARTSGDFG-EQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-  163 (246)
T ss_dssp             GGGCEEEEEEECCSSGGG-CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-
T ss_pred             HHHCEEEEEEEecCCCCc-ceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEE-
Confidence            678889998875421100 001111   1111111123456544 444431 2  2338999999998876  999975 


Q ss_pred             CCeEeecccCceEEe---------eCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCCCc
Q psy5697          81 NNTVIAYVKDLRIAL---------SNGS------LMFPPFPETGFRPDVH-STVYRCRASNEAGV  129 (145)
Q Consensus        81 dg~~i~~~~~~~~~~---------~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G~  129 (145)
                      ||..+....  ....         .+|+      |.|.+...+      | .|.|+|.|+|....
T Consensus       164 ~g~~l~~~~--~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~------d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          164 NGKEVHSGV--CTDPQPLKEQPALNDSRYALSSRLRVSATFWQ------NPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             TTEEECTTE--EECSSCEESSTTSTTCCEEEEEEEEEEHHHHT------CTTCEEEEEEEECCBC
T ss_pred             CCEECCCCc--ccccccccccccCCCCCEEEEEEEEECHHHhc------cCCCeEEEEEEecCCC
Confidence            888875321  1110         2454      556543222      4 89999999998654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.88  E-value=1.1e-08  Score=78.30  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=41.6

Q ss_pred             CeEEEeeEeccCC--CEEEEEccC-CeE---eec-------------ccCceEEe-----eCCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEP--SQLGWRFSN-NTV---IAY-------------VKDLRIAL-----SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P~--P~i~W~~~d-g~~---i~~-------------~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.|.  |.|.|++.+ |..   +..             ..+.....     ..++|.|.++..+      |
T Consensus       155 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D  228 (264)
T 2gjj_A          155 SVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSE------D  228 (264)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcc------c
Confidence            3999999999985  899998753 321   210             01111111     1237999888765      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +|.|.|.|.|.
T Consensus       229 sG~Y~C~a~n~  239 (264)
T 2gjj_A          229 SADYYCVRSGN  239 (264)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEecC
Confidence            99999999996

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.88  E-value=1.6e-08  Score=78.07  Aligned_cols=106  Identities=12%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CCcc-C-eEEEeeE-eccCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GNRT-R-GLELTRQ-TRYEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~~~-g-~~L~C~a-~G~P~P~i~W~~~dg~~i   85 (145)
                      ..|++.|.|-.... +.  +...    .........+|.+...+.. .... + +.+.|.+ .|+|.|+|+|++ |+..+
T Consensus        88 ~~D~G~Y~C~v~~~-~~--~~~~----~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~-~~~~~  159 (313)
T 4fqp_A           88 VEDEGNYTCLFVTF-PQ--GSRS----VDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGM  159 (313)
T ss_dssp             GGGCEEEEEEEECS-SS--CEEE----EEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEE-TTCCE
T ss_pred             hhhCEEEEEEEeec-cC--ccee----eeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeec-CCccc
Confidence            67788888854221 11  1111    1112233456766655554 2222 2 7889986 589999999985 66555


Q ss_pred             ecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          86 AYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        86 ~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .... ......+|      .|.|.+...      .|.|.|+|.|+|..|..
T Consensus       160 ~~~~-~~~~~~~~~~~~~s~l~i~~~~~------~d~g~Y~C~a~n~~~~~  203 (313)
T 4fqp_A          160 PNTS-QVPGFLSGTVTVTSLWILVPSSQ------VDGKNVTCKVEHESFEK  203 (313)
T ss_dssp             EEEE-EEECSSTTCEEEEEEEEECCCGG------GTTCEEEEEEECTTSSS
T ss_pred             cccc-eeeeecccccccceeeeeccccc------ccCeeEEEEEEccCcCc
Confidence            4221 11222333      366665443      28999999999998765

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.87  E-value=7.5e-09  Score=70.94  Aligned_cols=75  Identities=15%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee-c-------ccCceEE-ee--CCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA-Y-------VKDLRIA-LS--NGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-~-------~~~~~~~-~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.|.|.+.|.|++.+ |..   +- .       .++.... ..  +.+|.|.++..+      |+|.|.|.+.
T Consensus        18 ~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~   91 (120)
T 1mqk_L           18 TVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE------DFGSYYCQHH   91 (120)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             cEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHH------HCEEEEEEEE
Confidence            3999999999999999999753 321   11 0       1111121 12  237999988765      8999999999


Q ss_pred             cCC-Cce--EEEEEEEEec
Q psy5697         125 NEA-GVI--LSRFVHVKAD  140 (145)
Q Consensus       125 N~~-G~~--~s~~v~v~~~  140 (145)
                      |.. ...  ....+.|...
T Consensus        92 ~~~~~~~fg~gt~L~V~~~  110 (120)
T 1mqk_L           92 YGTPPLTFGGGTKLEIKRE  110 (120)
T ss_dssp             SSSSSCCBCCCEEEEEC--
T ss_pred             eCCCceEECCCeEEEEecC
Confidence            864 222  2345555543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.87  E-value=5.1e-09  Score=77.88  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=59.5

Q ss_pred             eecCceeEeeccccCccc--CC-ceeeeE--EEeccCCCCCCCEEE-EcCCCCCccC--eEEEeeEecc-CCC-EEEEEc
Q psy5697          10 LADADTYIIADRSLFPRP--LG-YLVGNI--VYSSRSENEHYPFRI-KSAPGGNRTR--GLELTRQTRY-EPS-QLGWRF   79 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~--~~-~~~~~~--~~~~~~~~~~~P~~i-~~p~~~~~~g--~~L~C~a~G~-P~P-~i~W~~   79 (145)
                      ..|+++|.|.........  .. ..+|..  +... .....+|.+. ..|......|  +.|.|.+.|. |.| +|+|+ 
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~-~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-  165 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVS-PASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN-  165 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEE-SCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC-
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecc-cCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe-
Confidence            578889988875532100  00 011111  1111 1122456544 4444333233  8999999997 877 99997 


Q ss_pred             cCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          80 SNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        80 ~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +||..+...........+|      +|.|.+....      | |.|+|.|+|..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSN  214 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTT------C-CCCCEEEEEGGGT
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcC------C-CcEEEEEEcCCCC
Confidence            4665432100011112333      4777655322      6 9999999998764

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.87  E-value=9.3e-09  Score=79.72  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCC------EEEEEccC-CeE---eecc--------cCceEE-eeC--CcEE
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPS------QLGWRFSN-NTV---IAYV--------KDLRIA-LSN--GSLM  101 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P------~i~W~~~d-g~~---i~~~--------~~~~~~-~~~--GsL~  101 (145)
                      +|.+.+.|.. ....  .+.|.|.+.|.|.|      .|.|++.+ |..   +...        ...... ...  ++|.
T Consensus       159 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~  238 (291)
T 2gki_A          159 DLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLT  238 (291)
T ss_dssp             CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEE
Confidence            3445555544 2223  39999999999987      99999753 321   1100        111111 122  3799


Q ss_pred             EcCCCCCCCCCCCCCeEEEEEEEcCCCceE--EEEEEEE
Q psy5697         102 FPPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVK  138 (145)
Q Consensus       102 i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~--s~~v~v~  138 (145)
                      |.++..+      |+|.|.|.|.|......  ...+.|+
T Consensus       239 I~~v~~~------DsG~Y~C~a~~~~~~~fg~gt~l~v~  271 (291)
T 2gki_A          239 ISSVQAE------DLAVYYCKQSYYHMYTFGSGTKLEIK  271 (291)
T ss_dssp             ESSCCGG------GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ECCCCHH------HCEEEEEEEccCCceEEcCCEEEEEE
Confidence            9988765      89999999999644332  2344444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.87  E-value=2.4e-09  Score=81.79  Aligned_cols=69  Identities=12%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                      +.|.|.. .|.|.|.|+|+ +||..+....+......+  .+|.|.++..+      |+|.|+|.|.|..|...+..+.
T Consensus        19 v~l~~~~~~~~p~~~v~W~-k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~~~n~~g~~~s~~l~   90 (312)
T 2y23_A           19 ISLNFECDKMTPKSEFSWS-KDYVSTEDSPRLEVESKGNKTKMTFKDLGMD------DLGIYSCDVTDTDGIASSYLID   90 (312)
T ss_dssp             EEEEEECSSCCTTCCEEEE-ETTEECTTCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEESSSCCCCEEEEEC
T ss_pred             EEEEEEEeCCCCCcEEEEE-ECCEECCCCCCEEEEEeCCEEEEEECcCCcc------CCEEEEEEEEeCCCcEEEEEEE
Confidence            5555554 68999999998 588887654433333333  38999888665      8999999999999976554443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.87  E-value=1.2e-08  Score=75.12  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=63.7

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEecc-CC-CEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTRY-EP-SQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G~-P~-P~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.....  ...+  ..........+|.+...+... .  +..+.|.|.+.|. |+ ++|+|+ +||..
T Consensus        77 ~~D~G~Y~C~a~~~~~~~--~~~~--~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~-k~g~~  151 (207)
T 2vol_A           77 WLNGKEFKCRVNSAAFPA--PIEK--TISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWE-SNGQP  151 (207)
T ss_dssp             HHTTCCEEEEEECTTCSS--CEEE--EECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEE-ETTEE
T ss_pred             cCCCCEEEEEEEccCCCC--ceEE--EeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEE-ECCEe
Confidence            458888988875532221  1111  111112445678776555442 1  2238999999995 54 399997 48887


Q ss_pred             eecccCc-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          85 IAYVKDL-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        85 i~~~~~~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +...... .....+|++.+..   +...   ...|.|.|+|.|+|....
T Consensus       152 l~~~~~~~~~~~~~g~~~~~s~l~i~~~---~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          152 AENYKNTQPIMDTDGSYFVYSKLNVQKS---NWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             CSCEEECCCEECTTSCEEEEEEEEEEHH---HHSSCCEEEEEEECTTSG
T ss_pred             ccCcccCCceECCCCCEEEEEEEEECHH---HcCCCCEEEEEEECCCCC
Confidence            6532111 1234566554421   1111   112689999999999653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.86  E-value=4.5e-09  Score=76.76  Aligned_cols=63  Identities=10%  Similarity=0.125  Sum_probs=43.5

Q ss_pred             CeEEEeeEecc-CCCEEEEEccC-CeE---ee-c-----------ccCceEE-ee--CCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSN-NTV---IA-Y-----------VKDLRIA-LS--NGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~d-g~~---i~-~-----------~~~~~~~-~~--~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+.|.|.+.|. |.|.|+|++.+ |..   +. .           .++.... ..  +++|.|.++..+      |+|.|
T Consensus        17 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y   90 (218)
T 3s96_B           17 SAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE------DEAIY   90 (218)
T ss_dssp             CEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGG------GCEEE
T ss_pred             cEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcc------cCEEE
Confidence            39999999999 99999998732 111   10 0           0011111 12  236999988765      89999


Q ss_pred             EEEEEcCCC
Q psy5697         120 RCRASNEAG  128 (145)
Q Consensus       120 ~C~A~N~~G  128 (145)
                      +|.|.|..|
T Consensus        91 ~C~~~~~~~   99 (218)
T 3s96_B           91 ICGVGDTIK   99 (218)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEecCCC
Confidence            999999987

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.86  E-value=1.2e-08  Score=74.89  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=44.2

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.|  .|.|.|++.+ |..+.                ...+......     +++|.|.++..+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   90 (219)
T 1c1e_H           17 TVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNE------D   90 (219)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGG------G
T ss_pred             cEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcc------c
Confidence            399999999986  7999998753 43321                0111122221     348999988765      8


Q ss_pred             CeEEEEEEEcCCC
Q psy5697         116 STVYRCRASNEAG  128 (145)
Q Consensus       116 ~G~Y~C~A~N~~G  128 (145)
                      +|.|+|.|.|..|
T Consensus        91 ~G~Y~C~~~~~~~  103 (219)
T 1c1e_H           91 MATYFCARGTTIV  103 (219)
T ss_dssp             CEEEEEEEEETTT
T ss_pred             CEEEEEEEeccCc
Confidence            9999999999874

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.86  E-value=7.4e-09  Score=77.88  Aligned_cols=74  Identities=14%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             CeEEEeeEe---ccCCCEEEEEccCCeE----e--e----------cccCceEE-----eeCCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQT---RYEPSQLGWRFSNNTV----I--A----------YVKDLRIA-----LSNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~---G~P~P~i~W~~~dg~~----i--~----------~~~~~~~~-----~~~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.   |.|.|.|+|++.++..    +  .          ...+....     ..+++|.|.++..+      |
T Consensus        22 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D   95 (268)
T 3mj6_A           22 SVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA------D   95 (268)
T ss_dssp             CEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGG------G
T ss_pred             cEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHh------H
Confidence            399999998   8999999998743311    0  0          00111121     12378999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +|.|+|.|.|..+.. .+..+.|..
T Consensus        96 ~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           96 EGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             CEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             CEEEEEEEEecCCcceEEEEEEEEE
Confidence            999999999987765 555666654

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.85  E-value=1.5e-08  Score=67.66  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=48.6

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeec-------------ccCceEEe-eCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAY-------------VKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~-------------~~~~~~~~-~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.. .+.+.+.+.|++.+|+.+..             .++..... .+++|.|.+++.+      |+|.|.|.+.|
T Consensus        21 v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~------DsG~Y~C~v~~   94 (110)
T 2ptt_A           21 VTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKE------DKGTYYMRVLR   94 (110)
T ss_dssp             EEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGG------GCEEEEEEEES
T ss_pred             EEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcc------cCeEEEEEEEc
Confidence            9999998 88899999999855543210             11111222 4679999998766      89999999998


Q ss_pred             CCCceEEEEEEE
Q psy5697         126 EAGVILSRFVHV  137 (145)
Q Consensus       126 ~~G~~~s~~v~v  137 (145)
                      .........+.|
T Consensus        95 ~~~~~~~~~L~V  106 (110)
T 2ptt_A           95 ETENELKITLEV  106 (110)
T ss_dssp             SSBCCEEEEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            764333333443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.85  E-value=4.6e-09  Score=76.72  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=47.3

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCeEeec--------------cc---CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNTVIAY--------------VK---DLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~--------------~~---~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+.|.|.+.+ .|.+.|+|++ +|..+..              .+   +...+..+++|.|.+++.+      |+|.|+|
T Consensus        15 ~v~L~C~~~~~~~~~~v~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~------D~G~Y~C   87 (193)
T 2if7_A           15 SVTLPLEFPAGEKVNFITWLF-NETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKME------DTGSYRA   87 (193)
T ss_dssp             CEEECCCCCCCSCCCEEEEEE-TTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGG------GCEEEEE
T ss_pred             eEEEeccCCCcccccEEEEEE-CCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcc------cCceEEE
Confidence            3999999976 5668999985 5654420              00   1223345789999998765      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|.|..|..
T Consensus        88 ~~~~~~~~~   96 (193)
T 2if7_A           88 QISTKTSAK   96 (193)
T ss_dssp             EEECSSCEE
T ss_pred             EEEecCCCe
Confidence            999999875

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.85  E-value=1.6e-08  Score=69.18  Aligned_cols=71  Identities=15%  Similarity=0.112  Sum_probs=52.9

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCC---eEeecccCceEEeeCC-----cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNN---TVIAYVKDLRIALSNG-----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg---~~i~~~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ...|+|.+.| .+.|+++|-|.+|   .+++...  ..-...|     .|.|.++-.+      |+|.|+|.|.+..|.+
T Consensus        28 ~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~--q~w~E~~N~s~fvLhf~~V~~s------DsGsYRCsAn~~sg~i   99 (120)
T 2aw2_A           28 PFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ--TSWKEEKNISFFILHFEPVLPN------DNGSYRCSANFQSNLI   99 (120)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEECSSCEEECCSSC--EEEEECSSCEEEEEEESSCCGG------GCEEEEEEEEETTEEE
T ss_pred             eEEEEccEEeccCCCceEEEecCCceEEECcccc--ccceecCCeeEEEEEEeeeeEc------CCcceEEEeeCCCCcE
Confidence            3899999999 7999999998887   4444321  1112233     4777777665      8999999999999999


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      .|..+++.
T Consensus       100 eSHsvtI~  107 (120)
T 2aw2_A          100 ESHSTTLY  107 (120)
T ss_dssp             ECCCEEEE
T ss_pred             EeeEEEEE
Confidence            87766655

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.85  E-value=7.3e-09  Score=78.02  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEeccC-----CCEEEEEccC-CeEe---e--------cccCceEEeeCC---cEEEc
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQTRYE-----PSQLGWRFSN-NTVI---A--------YVKDLRIALSNG---SLMFP  103 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~G~P-----~P~i~W~~~d-g~~i---~--------~~~~~~~~~~~G---sL~i~  103 (145)
                      +.+.+.|.. ..  +..+.|.|.+.|.|     .|.|+|++.+ |..+   .        ..++......++   +|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            445554554 22  23399999999998     7999998743 2211   0        011122222222   89999


Q ss_pred             CCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697         104 PFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       104 ~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ++..+      |+|.|+|.|.|..+..
T Consensus       115 ~v~~~------D~G~Y~C~~~~~~~~~  135 (252)
T 3bkj_L          115 RVEAE------DLGVYYCFQASLVPLT  135 (252)
T ss_dssp             SCCGG------GCEEEEEEECSBSSCE
T ss_pred             CCCcc------cCEEEEEEEEcCCccE
Confidence            88765      8999999999997754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.85  E-value=1.3e-08  Score=82.79  Aligned_cols=78  Identities=14%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEecc-CC-CEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPD  113 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~  113 (145)
                      .+|.+...++. ....  .+.|.|.+.|. |. |.|+|+ +||..+...........+|      +|.|.++..+     
T Consensus       131 ~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~-k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~-----  204 (457)
T 1hzh_H          131 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-----  204 (457)
T ss_dssp             BCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEET-TTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGG-----
T ss_pred             CCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEE-eCCEeccceEcCceECCCCCEEEEEEEEecccccC-----
Confidence            46665544433 2223  38999999998 64 899996 5775432111111122334      6888766433     


Q ss_pred             CCCeEEEEEEEcCCCce
Q psy5697         114 VHSTVYRCRASNEAGVI  130 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~  130 (145)
                       | |.|+|.|+|..|..
T Consensus       205 -d-G~Y~C~a~n~~~~~  219 (457)
T 1hzh_H          205 -T-QTYICNVNHKPSNT  219 (457)
T ss_dssp             -T-SCCEEEEEEGGGTE
T ss_pred             -C-ceEEEEEEeCCCCc
Confidence             7 99999999998874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.84  E-value=5.8e-09  Score=80.62  Aligned_cols=68  Identities=18%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             eEEEee-EeccCCCEEEEEcc-CCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          61 GLELTR-QTRYEPSQLGWRFS-NNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        61 ~~L~C~-a~G~P~P~i~W~~~-dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      +.|.|. +.|.|.|+|+|++. ++....    ......+|      .|.|.++..+      |+|.|+|.|+|..|.. .
T Consensus       153 ~~l~C~~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~------d~G~Y~C~a~n~~~~~~~  222 (331)
T 3u83_A          153 LVATCTSANGKPPSVVSWETRLKGEAEY----QEIRNPNGTVTVISRYRLVPSREA------HQQSLACIVNYHMDRFKE  222 (331)
T ss_dssp             EEEEEEEEEEBSCCEEEEEESSCCEEEE----EEEECTTSCEEEEEEEEECCCGGG------TTCEEEEEEEETTEEEEE
T ss_pred             EEEEEEecCCcCCceEEEEcCCCCcccc----ceeECCCCcEEEEEEEEEEecccc------CCCEEEEEEecCCCccee
Confidence            899998 99999999999863 232211    11122233      4666655443      8999999999999985 3


Q ss_pred             EEEEEEE
Q psy5697         132 SRFVHVK  138 (145)
Q Consensus       132 s~~v~v~  138 (145)
                      +..+.|.
T Consensus       223 ~~~l~V~  229 (331)
T 3u83_A          223 SLTLNVQ  229 (331)
T ss_dssp             EEECCEE
T ss_pred             eEEEEEe
Confidence            3344443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.84  E-value=4.6e-09  Score=80.12  Aligned_cols=86  Identities=9%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             CCCCEEEEcCCCCCc--cCeEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          44 EHYPFRIKSAPGGNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        44 ~~~P~~i~~p~~~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      ..+|.|...|...+.  ..++|.|.+.+ +.+.+.|+| ||..+... ........+++|.|.++..+      |+|.|+
T Consensus         5 ~~kP~i~~~P~~~v~~G~~VtL~C~~~~-~~~~~~w~k-~g~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~   76 (242)
T 1p6f_A            5 LPKPFIWAEPHFMVPKEKQVTICCQGNY-GAVEYQLHF-EGSLFAVDRPKPPERINKVKFYIPDMNSR------MAGQYS   76 (242)
T ss_dssp             CCCCEEEEESCSEEETTCCEEEEEECCT-TCCEEEEEE-TTEEEEEECCSSCTTCCEEEEEECSCCGG------GCEEEE
T ss_pred             CCCCEEEeeCCCccCCCCcEEEEEeeCC-CCcEEEEEE-CCCccccccccccCCcceeEEEecCCCcc------cCeEEE
Confidence            346888888776333  33999999987 568999984 77765421 11111123568999888765      899999


Q ss_pred             EEEEcCCCce-EEEEEEE
Q psy5697         121 CRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v  137 (145)
                      |.+.|..|.. .|..+.|
T Consensus        77 C~~~~~~~~s~~S~~~~L   94 (242)
T 1p6f_A           77 CIYRVGELWSEPSNLLDL   94 (242)
T ss_dssp             EEEEETTEECCCCCCEEE
T ss_pred             EEEecCCccccCCcceEE
Confidence            9999986643 3443333

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.83  E-value=3.9e-08  Score=68.11  Aligned_cols=73  Identities=14%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             CeEEEeeEeccCC---CEEEEEccCC-eEee--------------cccCceEEee------CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEP---SQLGWRFSNN-TVIA--------------YVKDLRIALS------NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P~---P~i~W~~~dg-~~i~--------------~~~~~~~~~~------~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.+.+.   +.|.|++.+. ..+.              ...+......      +.+|.|.+++.+      |
T Consensus        23 ~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~------D   96 (139)
T 1pko_A           23 EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS------D   96 (139)
T ss_dssp             CEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG------G
T ss_pred             CEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHH------H
Confidence            3999999988664   7999987542 1111              0011122222      237999988766      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|+|.+.|..|.. ....+.|.
T Consensus        97 ~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           97 EGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEe
Confidence            999999999999865 23355554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.83  E-value=8.2e-09  Score=76.95  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEEE-EcCCC-CC--ccCeEEEeeEec-cCCC-EEEEEcc
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFRI-KSAPG-GN--RTRGLELTRQTR-YEPS-QLGWRFS   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~i-~~p~~-~~--~~g~~L~C~a~G-~P~P-~i~W~~~   80 (145)
                      ..|+++|.|........  ...++.   ..+........+|.+. ..|.. ..  +..+.|.|.+.| .|+| +|+|+ +
T Consensus        84 ~~D~G~Y~C~~~~~~~~--~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~-~  160 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGD--EQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW-V  160 (240)
T ss_dssp             GGGCEEEEEEEESSTTB--CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE-E
T ss_pred             hhHCEEEEEEEccCCCc--ceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE-E
Confidence            67888998887521000  001111   1111111223556554 44443 11  223899999999 6667 79997 4


Q ss_pred             CCeEeecccCc---eEEeeCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCCC
Q psy5697          81 NNTVIAYVKDL---RIALSNGS------LMFPPFPETGFRPDVH-STVYRCRASNEAG  128 (145)
Q Consensus        81 dg~~i~~~~~~---~~~~~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G  128 (145)
                      ||+.+......   .....+|+      |.|.+...+      | .|.|+|.|+|...
T Consensus       161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWH------NPRNHFRCQVQFHGL  212 (240)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHS------CTTCEEEEEEEECCB
T ss_pred             CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhc------cCCCEEEEEEEcCCC
Confidence            88887532110   12233554      666654332      4 6799999999865

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.83  E-value=8.1e-09  Score=72.72  Aligned_cols=70  Identities=11%  Similarity=0.046  Sum_probs=50.6

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccC-CCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +|.+...|.. ....|  +.|.|.+.|.| .+.++|++ ||..+...        .+.+.|.++..+      |+|.|+|
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~-~g~~~~~~--------~~~~~~~~~~~~------d~G~Y~C   68 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTH--------TQPSYRFKANNN------DSGEYTC   68 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEE-TTEECTTC--------CSSEEEEECCGG------GCEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEE-CCeEcccC--------ccceEEEecccc------cCeEEEE
Confidence            4667777765 22333  89999999998 68999985 88776432        345666666544      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|.|..++.
T Consensus        69 ~~~~~~~s~   77 (170)
T 3ry4_A           69 QTGQTSLSD   77 (170)
T ss_dssp             EETTSBCCC
T ss_pred             EEeCCCceE
Confidence            999876654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.83  E-value=9.5e-09  Score=76.93  Aligned_cols=65  Identities=12%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             CeEEEeeEeccC-----CCEEEEEccC-CeEe---ec---------ccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYE-----PSQLGWRFSN-NTVI---AY---------VKDLRIALSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P-----~P~i~W~~~d-g~~i---~~---------~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|.+.|.|     .|.|.|++.+ |..+   ..         ..+......++  +|.|.++..+      |+|.|
T Consensus        18 ~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y   91 (247)
T 1svz_A           18 QASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE------DLGIY   91 (247)
T ss_dssp             CEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEE
T ss_pred             CEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHH------HCEEE
Confidence            399999999999     7999998743 2211   10         11111122222  7999988765      89999


Q ss_pred             EEEEEcCCCce
Q psy5697         120 RCRASNEAGVI  130 (145)
Q Consensus       120 ~C~A~N~~G~~  130 (145)
                      .|.|.|..+..
T Consensus        92 ~C~~~n~~~~~  102 (247)
T 1svz_A           92 YCFQGSHFPPT  102 (247)
T ss_dssp             EEEECSSSSCE
T ss_pred             EEEEccCCccE
Confidence            99999997653

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.82  E-value=1.1e-08  Score=77.48  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             eEEEeeEeccC--CCEEEEEccC-CeE---eec------------ccCceEEee---C--CcEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYE--PSQLGWRFSN-NTV---IAY------------VKDLRIALS---N--GSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~d-g~~---i~~------------~~~~~~~~~---~--GsL~i~~~~~~~~~~~~d~G  117 (145)
                      ++|.|.+.|.|  .|.|.|++.+ |..   +..            ..+......   +  ++|.|.++..+      |+|
T Consensus        18 v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------DsG   91 (257)
T 1f3r_B           18 LSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD------DTG   91 (257)
T ss_dssp             EEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT------CCE
T ss_pred             EEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc------cCE
Confidence            99999999996  7999998742 221   100            111222221   2  38999988766      899


Q ss_pred             EEEEEEEcCCC
Q psy5697         118 VYRCRASNEAG  128 (145)
Q Consensus       118 ~Y~C~A~N~~G  128 (145)
                      .|.|.|.|..|
T Consensus        92 ~Y~C~a~n~~g  102 (257)
T 1f3r_B           92 TYYCTRDLYGG  102 (257)
T ss_dssp             EEEEEEESSSS
T ss_pred             EEEEEEccccc
Confidence            99999999976

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.82  E-value=1.2e-08  Score=77.76  Aligned_cols=72  Identities=10%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             EEEcCCC-CCcc--CeEEEeeEeccCC--CEEEEEccC-CeEee------------------cccCceEEee-----CCc
Q psy5697          49 RIKSAPG-GNRT--RGLELTRQTRYEP--SQLGWRFSN-NTVIA------------------YVKDLRIALS-----NGS   99 (145)
Q Consensus        49 ~i~~p~~-~~~~--g~~L~C~a~G~P~--P~i~W~~~d-g~~i~------------------~~~~~~~~~~-----~Gs   99 (145)
                      ++..|.. ....  .+.|.|.+.|.|+  |.|.|++.+ |..+.                  ..++......     .++
T Consensus       154 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  233 (268)
T 1x9q_A          154 KLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVY  233 (268)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             EEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEE
Confidence            4455544 2233  3999999999875  899998642 33221                  0111112211     247


Q ss_pred             EEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697         100 LMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus       100 L~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      |.|.++..+      |+|.|.|.|.|.
T Consensus       234 L~I~~v~~~------DsG~Y~C~a~~~  254 (268)
T 1x9q_A          234 LQMNNLRVE------DTGIYYCTGASY  254 (268)
T ss_dssp             EEECSCCGG------GCEEEEEEEEET
T ss_pred             EEECCCCHH------HCEEEEEEEccC
Confidence            999988765      899999999985

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.82  E-value=2.8e-08  Score=75.30  Aligned_cols=116  Identities=14%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             eceee-eecCceeEeeccccC-cccCCceeeeEEEe-ccCCCCCCCEEEEcCCC-CCccC--eEEEeeEec-cCCC-EEE
Q psy5697           5 HISTL-LADADTYIIADRSLF-PRPLGYLVGNIVYS-SRSENEHYPFRIKSAPG-GNRTR--GLELTRQTR-YEPS-QLG   76 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~-~~~~~~~~P~~i~~p~~-~~~~g--~~L~C~a~G-~P~P-~i~   76 (145)
                      +|+.+ ..|.++|.|...... +..  ..+|..+.- .......+|.+...++. ....|  +.|.|.+.| +|.| +|+
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~--~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  159 (253)
T 3liz_H           82 QMSSLKSEDTAMYYCTRDPAGRAWF--AYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  159 (253)
T ss_dssp             EECSCCGGGCEEEEEEECCBTTTBC--CEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEE
T ss_pred             EECCCChhhCEEEEEEEecCCccee--eEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEE
Confidence            34444 678899999875532 100  122221111 11133456766644433 22223  899999998 8877 999


Q ss_pred             EEccCCeEeec--ccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          77 WRFSNNTVIAY--VKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        77 W~~~dg~~i~~--~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      |+ +||..+..  .+..   ......++|.|.+....      | |.|+|.|+|..+..
T Consensus       160 W~-~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d-g~ytC~v~~~~~~~  210 (253)
T 3liz_H          160 WN-SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWP------S-ETVTCNVAHPASST  210 (253)
T ss_dssp             EG-GGTBCTTEEECCCEEETTEEEEEEEEEEETTSTT------T-SCCEEEEEEGGGTE
T ss_pred             EE-eCCeecceEeCCccccCCeEEEEEEEEEcHHHCC------C-ceEEEEEEECCCCc
Confidence            96 46653210  0000   01112256777665432      7 99999999999865

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.82  E-value=1e-08  Score=68.66  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.|.|.+.|.|++.+ |..   +..        .++.... ...  .+|.|.++..+      |+|.|.|.+.
T Consensus        20 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~   93 (109)
T 2q20_A           20 RVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE------DIATYYCQQY   93 (109)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             cEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh------hCEEEEEEEe
Confidence            3999999999999999999754 221   110        1111121 222  37999988765      8999999999


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      |.
T Consensus        94 ~~   95 (109)
T 2q20_A           94 DN   95 (109)
T ss_dssp             SS
T ss_pred             eC
Confidence            86

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.82  E-value=2.4e-08  Score=80.78  Aligned_cols=109  Identities=14%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEE-EEcCCCCCccC--eEEEeeEecc-CCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFR-IKSAPGGNRTR--GLELTRQTRY-EPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~-i~~p~~~~~~g--~~L~C~a~G~-P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+..........   +. .......+|.+ ...|......|  +.|.|.+.|. |.| +|+|+ +||..
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~~---l~-V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~-k~~~~  161 (434)
T 1igy_B           87 SDDSAVYYCVREGEVPYWGQGTT---VT-VSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN-SGSLS  161 (434)
T ss_dssp             GGGCSEECCCCSSSSCCCCCCEE---CE-ECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEET-TTTBC
T ss_pred             hHHCEEEEEEEEccccccCCceE---EE-EccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEe-eCCcC
Confidence            66888888887652111000000   10 01112234544 44444333333  8999999997 777 99996 56654


Q ss_pred             eec--ccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          85 IAY--VKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        85 i~~--~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +..  .+..   ......++|.|.++..+      | |.|+|.|+|..|..
T Consensus       162 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          162 SGVHTFPAVLQSDLYTLSSSVTVPSSPRP------S-ETVTCNVAHPASST  205 (434)
T ss_dssp             SSEEECCCEECSSCEEEEEEEEEETTTTT------S-SCCEEEEECTTTTC
T ss_pred             CCeEecCceecCCcEEEEEEEEEcchhcC------C-CcEEEEEEeCCCCc
Confidence            211  1100   00111245788665432      7 99999999999985

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.82  E-value=9.7e-09  Score=75.00  Aligned_cols=73  Identities=19%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             eEEEeeEeccCCC-----EEEEEccCCeEeec--------------ccCceEEee------CCcEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS-----QLGWRFSNNTVIAY--------------VKDLRIALS------NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~P-----~i~W~~~dg~~i~~--------------~~~~~~~~~------~GsL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.+.|.|.+     .|+|++. +..+..              ..+......      +.+|.|.++..+      |
T Consensus        19 v~L~C~~~~~p~~~~~~~~v~W~~~-~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~------D   91 (222)
T 3sbw_C           19 MTIECKFPVEKQLDLAALIVYWEME-DKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ------D   91 (222)
T ss_dssp             EEEEEECCCCSSCCTTTCEEEEEET-TEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGG------G
T ss_pred             EEEEeEecCCCCCCCccEEEEEEEC-CcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccc------c
Confidence            9999999998844     9999864 322210              011222222      238999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEecc
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKADS  141 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~~~  141 (145)
                      +|.|+|.|.| .|.. ....+.|.+..
T Consensus        92 ~G~Y~C~~~~-~~~~~~~~~l~V~~~~  117 (222)
T 3sbw_C           92 AGVYRCMISY-GGADYKRITVKVNAPY  117 (222)
T ss_dssp             CEEEEEEEES-SSEEEEEEEEEEEBCC
T ss_pred             CeEEEEEEEe-CCCceeEEEEEEECCC
Confidence            9999999999 5544 33345555443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.81  E-value=4.1e-09  Score=78.26  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=50.9

Q ss_pred             CCCCEEEEcCCC-C--CccC--eEEEeeEecc---CC-CEEEEEccCCeEeecccC-ce------EEeeCCcEEEcCCCC
Q psy5697          44 EHYPFRIKSAPG-G--NRTR--GLELTRQTRY---EP-SQLGWRFSNNTVIAYVKD-LR------IALSNGSLMFPPFPE  107 (145)
Q Consensus        44 ~~~P~~i~~p~~-~--~~~g--~~L~C~a~G~---P~-P~i~W~~~dg~~i~~~~~-~~------~~~~~GsL~i~~~~~  107 (145)
                      ..+|.+...|++ .  ...|  +.|.|.+.|.   |+ |.|+|++ +|..+..... ..      .....++|.|.++..
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   85 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFV-NNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW   85 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEE-TTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEE-CCccccCcccccccccCCCeEEEEEEEEEcHHHc
Confidence            445655555555 2  3333  9999999998   44 8999985 6665532110 00      111234688877655


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCce
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +      |+|.|+|.|.|..|..
T Consensus        86 ~------D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           86 M------SGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             H------TTCCEEEEEEETTCSS
T ss_pred             C------CCCeEEEEEECCcCCC
Confidence            4      8999999999998864

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.81  E-value=1.5e-09  Score=80.42  Aligned_cols=79  Identities=8%  Similarity=-0.054  Sum_probs=45.0

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccC-CeEe---e--------cccCceEE---eeCCcEEEcCCCC
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSN-NTVI---A--------YVKDLRIA---LSNGSLMFPPFPE  107 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~d-g~~i---~--------~~~~~~~~---~~~GsL~i~~~~~  107 (145)
                      .+.+.+.|.. ....|  +.|.|.+.|.|.|.|+|++.+ |..+   .        ..+.....   ..+.+|.|.++..
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            3455565655 23333  899999999999999998643 2221   0        00111111   1122799988876


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCce
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +      |+|.|+|.|.|..|..
T Consensus       103 ~------D~G~Y~C~~~~~~~~~  119 (233)
T 3bqu_C          103 E------DVADYYCLQSDNLPYT  119 (233)
T ss_dssp             C------CCSEEEEEECSSSSCC
T ss_pred             H------HCEEEEEEEecCCcee
Confidence            5      8999999999987754

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.81  E-value=2.7e-08  Score=74.03  Aligned_cols=78  Identities=15%  Similarity=0.074  Sum_probs=46.3

Q ss_pred             CCCEEEEcCCC-CCccC--eEEEeeEecc-CCC-EEEEEccCCeEeecccCceEE-----eeCCcEEEcCCCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-GNRTR--GLELTRQTRY-EPS-QLGWRFSNNTVIAYVKDLRIA-----LSNGSLMFPPFPETGFRPDV  114 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~g--~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~~~~~~-----~~~GsL~i~~~~~~~~~~~~  114 (145)
                      .+|.+...++. ....|  +.|.|.+.|. |.| +|+|++ +|..+.........     ...++|.|.+...       
T Consensus       129 ~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-------  200 (228)
T 3bae_H          129 TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS-GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-------  200 (228)
T ss_dssp             BCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGG-GTCCTTEEEEEEEEETTEEEEEEEEEEETTTT-------
T ss_pred             CCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEee-CCcccCceEcCceeCCCcEEEEEEEEEEhhhc-------
Confidence            46765544433 22233  8999999997 888 999964 66543110000111     1123577765432       


Q ss_pred             CCeEEEEEEEcCCCce
Q psy5697         115 HSTVYRCRASNEAGVI  130 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~  130 (145)
                      |.|.|+|.|+|..|..
T Consensus       201 d~g~YtC~~~n~~~~~  216 (228)
T 3bae_H          201 PSESITCNVAHPASST  216 (228)
T ss_dssp             TTSCCEEEEEEGGGTE
T ss_pred             CCCcEEEEEEECCCCC
Confidence            3499999999999875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.81  E-value=5.2e-09  Score=79.17  Aligned_cols=76  Identities=11%  Similarity=0.073  Sum_probs=40.1

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE---ee-cc------------c-CceEE----eeCCcEE
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV---IA-YV------------K-DLRIA----LSNGSLM  101 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-~~------------~-~~~~~----~~~GsL~  101 (145)
                      |.+.+.|.+ .+  +..++|.|.+.|.|.|.|.|++.+ +..   +. ..            + +....    ..+.+|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            444455554 22  233999999999999999998732 111   11 00            0 11111    1234799


Q ss_pred             EcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697         102 FPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus       102 i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      |.++..+      |+|.|.|.|.|..|
T Consensus        83 I~~v~~~------DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           83 LRNLIEN------DSGVYYCATWDQNY  103 (259)
T ss_dssp             ESSCCGG------GCEEEEEEEECTTS
T ss_pred             ECCCCcc------cCEEEEEEEeeCCc
Confidence            9988766      89999999999987

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.81  E-value=1.8e-08  Score=75.25  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=43.2

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .|.|.|++.+ |....                ...+......     .++|.|.++..+      |
T Consensus        19 ~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D   92 (247)
T 2ghw_B           19 SLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE------D   92 (247)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHH------H
Confidence            399999999998  6899998742 22110                0111222222     137999988765      8


Q ss_pred             CeEEEEEEEcCCCc
Q psy5697         116 STVYRCRASNEAGV  129 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~  129 (145)
                      +|.|+|.|.|..+.
T Consensus        93 ~G~Y~C~~~n~~~~  106 (247)
T 2ghw_B           93 TAVYYCARDRSYYL  106 (247)
T ss_dssp             CEEEEEEEEETTEE
T ss_pred             CEEEEEeeeccCCc
Confidence            99999999998443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.80  E-value=1.9e-08  Score=74.59  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-CC--ccCeEEEeeEec-cCCC-EEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-GN--RTRGLELTRQTR-YEPS-QLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~~--~~g~~L~C~a~G-~P~P-~i~W~~~dg~~   84 (145)
                      ..|++.|.|...+.....  ...+  ..........+|.+...++. ..  +..+.|.|.+.| +|+| +|+|+ +||..
T Consensus        85 ~~D~g~Y~C~~~~~~~~~--~~~~--~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~-k~g~~  159 (218)
T 2rgs_A           85 WMSGKEFKCKVNNKDLPS--PIER--TISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWT-SNGHT  159 (218)
T ss_dssp             HHTTCCEEEEEEETTCSS--CEEE--EECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEE-ETTEE
T ss_pred             cCCCCeEEEEEECCcCCC--cceE--EEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEE-ECCEe
Confidence            457788888775431111  1121  11111244567877655544 21  223899999999 6776 99997 58887


Q ss_pred             eecccCc-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          85 IAYVKDL-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        85 i~~~~~~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +...... .....+|++.+..   +...   ...|.|.|+|.|+|....
T Consensus       160 ~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          160 EENYKDTAPVLDSDGSYFIYSKLNMKTS---KWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             ECCEEECCCEECTTSCEEEEEEEEEEHH---HHHHCSCEEEEEECTTSG
T ss_pred             ccCceecccEECCCCCEEEEEEEEECHH---HcCCCCeEEEEEEcCCCC
Confidence            6432111 1234566655432   1111   011489999999999765

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.80  E-value=2.8e-08  Score=66.28  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             CeEEEeeEeccCC----CEEEEEccCC------eEee-------------cccCceEEeeC------CcEEEcCCCCCCC
Q psy5697          60 RGLELTRQTRYEP----SQLGWRFSNN------TVIA-------------YVKDLRIALSN------GSLMFPPFPETGF  110 (145)
Q Consensus        60 g~~L~C~a~G~P~----P~i~W~~~dg------~~i~-------------~~~~~~~~~~~------GsL~i~~~~~~~~  110 (145)
                      .+.|.|.+.+.|.    +.|.|++.+.      ..+.             ...+......+      ++|.|.++..+  
T Consensus        22 ~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~--   99 (126)
T 1eaj_A           22 TAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLS--   99 (126)
T ss_dssp             CEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCGG--
T ss_pred             CEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCChH--
Confidence            3999999998775    4599986431      2221             01122233333      68999988766  


Q ss_pred             CCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697         111 RPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                          |+|.|.|.+.|..|.. ...++|.
T Consensus       100 ----D~G~Y~C~v~~~~~~~-~~~~~L~  122 (126)
T 1eaj_A          100 ----DIGTYQCKVKKAPGVA-NKKIHLV  122 (126)
T ss_dssp             ----GCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             ----HCeEEEEEEEcCCccC-CcEEEEE
Confidence                8999999999998864 3444444

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.79  E-value=1.1e-08  Score=74.77  Aligned_cols=62  Identities=10%  Similarity=0.009  Sum_probs=42.2

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee---------------cccCceEEee---C--CcEEEcCCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA---------------YVKDLRIALS---N--GSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~---------------~~~~~~~~~~---~--GsL~i~~~~~~~~~~~~d~  116 (145)
                      .+.|.|.+.|.|  .|.|+|++.+ |....               ...+......   .  .+|.|.++..+      |+
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D~   90 (210)
T 3d9a_H           17 TLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE------DT   90 (210)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             cEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc------cC
Confidence            399999999986  4999998643 32211               0112222221   1  28999988765      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      |.|+|.|.|..
T Consensus        91 G~Y~C~~~~~~  101 (210)
T 3d9a_H           91 ATYYCANWDGD  101 (210)
T ss_dssp             EEEEEEETTSS
T ss_pred             EEEEEEEecCc
Confidence            99999999974

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.79  E-value=1.7e-08  Score=76.06  Aligned_cols=67  Identities=9%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             CeEEEeeEeccC--CCEEEEEcc-CCeEee----------------cccCceEEeeCC-----cEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFS-NNTVIA----------------YVKDLRIALSNG-----SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~-dg~~i~----------------~~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.+  .|.|.|++. ++..+.                ..++......++     +|.|.++..+      |
T Consensus        18 ~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D   91 (253)
T 3uzq_A           18 SVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSG------D   91 (253)
T ss_dssp             CEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcc------c
Confidence            399999999965  889999873 232211                011112222222     4999988765      8


Q ss_pred             CeEEEEEEEcCCCceEE
Q psy5697         116 STVYRCRASNEAGVILS  132 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s  132 (145)
                      +|.|+|.|.|..+...+
T Consensus        92 sG~Y~C~~~~~~~~~~~  108 (253)
T 3uzq_A           92 TAVYYCSRGWEGFAYWG  108 (253)
T ss_dssp             CEEEEEEECSSSCCEEC
T ss_pred             CEEEEEEEeeCCccEEC
Confidence            99999999998776543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.79  E-value=4e-09  Score=77.63  Aligned_cols=76  Identities=12%  Similarity=0.040  Sum_probs=48.8

Q ss_pred             EEEEcCCC-C-Ccc--CeEEEeeEeccC----CCEEEEEccCCeEeeccc-Cce------EEeeCCcEEEcCCCCCCCCC
Q psy5697          48 FRIKSAPG-G-NRT--RGLELTRQTRYE----PSQLGWRFSNNTVIAYVK-DLR------IALSNGSLMFPPFPETGFRP  112 (145)
Q Consensus        48 ~~i~~p~~-~-~~~--g~~L~C~a~G~P----~P~i~W~~~dg~~i~~~~-~~~------~~~~~GsL~i~~~~~~~~~~  112 (145)
                      +++..|.. . ...  .+.|.|.+.|.|    .+.|+|++ ++..+.... ...      .....++|.|.++..+    
T Consensus         4 v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~----   78 (207)
T 2vol_A            4 VFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFV-DDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWL----   78 (207)
T ss_dssp             EEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEEECCCEEECCCEETTTEEEEEEEEECCHHHHH----
T ss_pred             EEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEE-CCccccccccCCCcCcCCCcEEEEEEEEEehhHcC----
Confidence            55555553 2 233  399999999995    24999986 555543110 000      1112346888776554    


Q ss_pred             CCCCeEEEEEEEcCCCce
Q psy5697         113 DVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~  130 (145)
                        |+|.|+|.|.|..|..
T Consensus        79 --D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           79 --NGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             --TTCCEEEEEECTTCSS
T ss_pred             --CCCEEEEEEEccCCCC
Confidence              8999999999999864

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.78  E-value=5.8e-08  Score=66.13  Aligned_cols=76  Identities=16%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             CeEEEeeEec--cCCCEEEEEccCCeEeec------------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEE-
Q psy5697          60 RGLELTRQTR--YEPSQLGWRFSNNTVIAY------------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRAS-  124 (145)
Q Consensus        60 g~~L~C~a~G--~P~P~i~W~~~dg~~i~~------------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~-  124 (145)
                      .++|.|...+  .+.+.|.|++.+ ..+..            .++......+++|.|.+++.+      |+|.|+|.+. 
T Consensus        20 ~v~L~C~~~~~~~~~~~v~W~k~~-~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~------D~G~Y~C~v~~   92 (117)
T 3q0h_A           20 SIILQCHLSSTTAQVTQVNWEQQD-QLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVN------DTGEYFCIYHT   92 (117)
T ss_dssp             CEEECEEEESCCCEEEEEEEEETT-EEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGG------GCEEEEEEEEE
T ss_pred             CEEEEEEecCCCCCEEEEEEEeCC-EEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChh------hCEEEEEEEEE
Confidence            3999999988  445689998743 33221            122223345679999998766      8999999865 


Q ss_pred             cCCCce-EEEEEEEEeccC
Q psy5697         125 NEAGVI-LSRFVHVKADSR  142 (145)
Q Consensus       125 N~~G~~-~s~~v~v~~~~~  142 (145)
                      |..|.. ....+.|.+++.
T Consensus        93 ~~~g~~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           93 YPDGTYTGRIFLEVLESSV  111 (117)
T ss_dssp             ETTCCEEEEEEEEEECC--
T ss_pred             CCCCCeEEEEEEEEEccCc
Confidence            566776 344666665543

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.78  E-value=1.7e-08  Score=67.39  Aligned_cols=62  Identities=8%  Similarity=0.002  Sum_probs=42.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.|.|.+.|.|++.+ |..   +..        .++.... ..++  +|.|.++..+      |+|.|.|.+.
T Consensus        18 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~   91 (107)
T 1i8k_A           18 KVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE------DVGDYYCLQS   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHH------HCEEEEEEEe
Confidence            3999999999999999998753 221   210        1111122 2223  7999988765      8999999999


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      |..
T Consensus        92 ~~~   94 (107)
T 1i8k_A           92 FNV   94 (107)
T ss_dssp             SSS
T ss_pred             eCC
Confidence            863

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.77  E-value=6.6e-08  Score=79.29  Aligned_cols=85  Identities=8%  Similarity=0.006  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCC-C-CccCeEEEeeEecc-CC-C-EEEEEccCCeEeecccCceEE-eeCC------cEEEcCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-G-NRTRGLELTRQTRY-EP-S-QLGWRFSNNTVIAYVKDLRIA-LSNG------SLMFPPFPETGFRP  112 (145)
Q Consensus        45 ~~P~~i~~p~~-~-~~~g~~L~C~a~G~-P~-P-~i~W~~~dg~~i~~~~~~~~~-~~~G------sL~i~~~~~~~~~~  112 (145)
                      .+|.+...+.. . .+..+.|.|.+.|. |. | +|+|+ ++|............ ..+|      .|.|.+...+    
T Consensus       126 ~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~-~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~----  200 (475)
T 1iga_A          126 TSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWS-ESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCL----  200 (475)
T ss_pred             cCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEc-CCCcccceEeCCceecCCCCcEEEEEEEEechhHcC----
Confidence            35655444332 2 22238999999998 65 5 99997 465432110000011 1233      4666544322    


Q ss_pred             CCCCeEEEEEEEcCCCceEEEEEE
Q psy5697         113 DVHSTVYRCRASNEAGVILSRFVH  136 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~~s~~v~  136 (145)
                        |+|.|+|.|+|..|...+..+.
T Consensus       201 --d~g~Y~C~a~n~~~~~~~~~v~  222 (475)
T 1iga_A          201 --AGKSVTCHVKHYTNPSQDVTVP  222 (475)
T ss_pred             --CCceEEEEEEECCCCceeeeEe
Confidence              7999999999999865444444

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.77  E-value=7.9e-09  Score=74.80  Aligned_cols=64  Identities=11%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             eEEEeeEe----ccCCCEEEEEccCCeEeec-----------ccCceE--EeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQT----RYEPSQLGWRFSNNTVIAY-----------VKDLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~----G~P~P~i~W~~~dg~~i~~-----------~~~~~~--~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|.+.    |.|.|.+.|++ ++..+..           ..+...  ...+++|.|.++..+      |+|.|+|.|
T Consensus        12 v~L~C~~~~~~~~~~~~~~~W~~-~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~   84 (201)
T 1dr9_A           12 ATLSCGHNVSVEELAQTRIYWQK-EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS------DEGTYECVV   84 (201)
T ss_dssp             EEECCSCCCCTTHHHHCEEEEEE-TTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGG------GCEEEEEEE
T ss_pred             EEEecccCCCcccccccEEEEEe-CCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccch------hCeEEEEEE
Confidence            89999995    66889999975 7776521           111111  123569999988765      899999999


Q ss_pred             EcCCCceE
Q psy5697         124 SNEAGVIL  131 (145)
Q Consensus       124 ~N~~G~~~  131 (145)
                      .|..|...
T Consensus        85 ~~~~g~~~   92 (201)
T 1dr9_A           85 LKYEKDAF   92 (201)
T ss_dssp             EECCTTSC
T ss_pred             EcCCCCcc
Confidence            99988763

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.77  E-value=3e-08  Score=77.24  Aligned_cols=76  Identities=11%  Similarity=0.057  Sum_probs=49.3

Q ss_pred             EEEEcCCC-CC--ccCeEEEeeEecc-CCC---EEEEEccCCeEeecccCceEEe------eCCcEEEcCCCCCCCCCCC
Q psy5697          48 FRIKSAPG-GN--RTRGLELTRQTRY-EPS---QLGWRFSNNTVIAYVKDLRIAL------SNGSLMFPPFPETGFRPDV  114 (145)
Q Consensus        48 ~~i~~p~~-~~--~~g~~L~C~a~G~-P~P---~i~W~~~dg~~i~~~~~~~~~~------~~GsL~i~~~~~~~~~~~~  114 (145)
                      +++..|.. ..  +..+.|.|.+.|. |.|   +|+|++.+|..+..........      .+++|.|.++..+      
T Consensus       115 v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~------  188 (323)
T 2wqr_A          115 AYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI------  188 (323)
T ss_dssp             EEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHH------
T ss_pred             EEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHcc------
Confidence            55555543 12  3349999999997 567   9999876666553221111111      2346898877654      


Q ss_pred             CCeEEEEEEEcCCCc
Q psy5697         115 HSTVYRCRASNEAGV  129 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~  129 (145)
                      |+|.|+|.|.|..+.
T Consensus       189 D~G~Y~C~a~n~~~~  203 (323)
T 2wqr_A          189 EGETYQCRVTHPHLP  203 (323)
T ss_dssp             TTCCEEEEEECTTSS
T ss_pred             CCCCEEEEEECCCCC
Confidence            899999999999753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.77  E-value=3.5e-08  Score=79.95  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=60.6

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEE-eccCCCCCCCEEE-EcCCCCCcc--CeEEEeeEecc-CCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVY-SSRSENEHYPFRI-KSAPGGNRT--RGLELTRQTRY-EPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~P~~i-~~p~~~~~~--g~~L~C~a~G~-P~P-~i~W~~~dg~   83 (145)
                      ..|.+.|.|...+.....  ..++..+. ........+|.+. ..|......  .+.|.|.+.|. |.| +|+|+ +||.
T Consensus        88 ~~D~G~Y~C~~~~~~~~~--~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~-~~~~  164 (444)
T 1igt_B           88 SEDTAMYYCARHGGYYAM--DYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN-SGSL  164 (444)
T ss_dssp             GGGCEEEEEEEECSSSCE--EEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEG-GGTB
T ss_pred             HHHCEEEEEEEecCCccc--ccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEe-cCCC
Confidence            568888888775432110  01111110 0111123356444 444433223  38999999996 877 99996 4665


Q ss_pred             Eee--cccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          84 VIA--YVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        84 ~i~--~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.  ..+..   ......++|.|.++..+      | |.|+|.|+|..|..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d-g~Y~C~a~n~~~~~  209 (444)
T 1igt_B          165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWP------S-QSITCNVAHPASST  209 (444)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEECSTTTT------T-SCCEEEEEETTTTE
T ss_pred             CCCeEecCccccCCcEEEEEEEEEchhhcC------C-CeEEEEEEeCCCCc
Confidence            421  11110   01111246788665432      7 99999999999985

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.77  E-value=1.8e-08  Score=76.58  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=44.3

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .|.|.|++.+ |..+.                ..++......     +++|.|.++..+      |
T Consensus        17 ~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   90 (256)
T 1nqb_A           17 SVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSE------D   90 (256)
T ss_dssp             CEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChh------h
Confidence            399999999986  7899998742 32211                0112222221     237999988765      8


Q ss_pred             CeEEEEEEEcCCCc
Q psy5697         116 STVYRCRASNEAGV  129 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~  129 (145)
                      +|.|+|.|.|..|.
T Consensus        91 sG~Y~C~~~n~~g~  104 (256)
T 1nqb_A           91 SAVYYCARYDYYGS  104 (256)
T ss_dssp             CEEEEEEECCTTSS
T ss_pred             CEEEEEEEeeccCc
Confidence            99999999999873

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.77  E-value=3.3e-08  Score=74.67  Aligned_cols=69  Identities=10%  Similarity=0.084  Sum_probs=49.2

Q ss_pred             CeEEEeeEec-cCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCC---CCCCCCCCCCCe--EEEEEEEcCCCce-
Q psy5697          60 RGLELTRQTR-YEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPF---PETGFRPDVHST--VYRCRASNEAGVI-  130 (145)
Q Consensus        60 g~~L~C~a~G-~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~---~~~~~~~~~d~G--~Y~C~A~N~~G~~-  130 (145)
                      .+.|.|.+.| .|.|  +|+|++ ||..+..    .....+++|.+..+   ..+      |+|  .|+|.|.|..|.. 
T Consensus        20 ~v~l~C~~~g~~p~p~~~v~W~k-~~~~l~~----~~~~~~~~~~~~~~~~~~~~------d~g~g~Y~C~a~n~~~~~~   88 (265)
T 2oz4_A           20 QGTVVCSLDGLFPVSEAQVHLAL-GDQRLNP----TVTYGNDSFSAKASVSVTAE------DEGTQRLTCAVILGNQSQE   88 (265)
T ss_dssp             EEEEEEEEESCSCGGGCEEEEEE-TTEECCC----EEEECSSEEEEEEEEEECGG------GCEEEEEEEEEEETTEEEE
T ss_pred             CEEEEEEccCCCCCcceEEEEEe-CCEECCc----eEeeCCCeEEEEeecccccc------cCCcceEEEEEecCCCCcE
Confidence            3899999999 8888  999985 7777642    23344556776554   322      667  5999999999986 


Q ss_pred             EEEEEEEEe
Q psy5697         131 LSRFVHVKA  139 (145)
Q Consensus       131 ~s~~v~v~~  139 (145)
                      .+..+.|..
T Consensus        89 ~~~~l~V~~   97 (265)
T 2oz4_A           89 TLQTVTIYS   97 (265)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            444566653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.76  E-value=3.7e-08  Score=74.38  Aligned_cols=75  Identities=7%  Similarity=-0.058  Sum_probs=48.2

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEecc-CCCEEEEEccC-CeEeec-----------ccCceEEe-----eCCcEEEcC
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRY-EPSQLGWRFSN-NTVIAY-----------VKDLRIAL-----SNGSLMFPP  104 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~-P~P~i~W~~~d-g~~i~~-----------~~~~~~~~-----~~GsL~i~~  104 (145)
                      +|.+++.|.. ....  .+.|.|.+.+. |.|.+.|++.+ +..+..           .++.....     .+.+|.|.+
T Consensus       136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  215 (259)
T 3omz_A          136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA  215 (259)
T ss_dssp             -CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred             CeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence            4677777765 2233  39999999886 89999998743 222110           01111221     124699998


Q ss_pred             CCCCCCCCCCCCeEEEEEEEcC
Q psy5697         105 FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus       105 ~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +..+      |+|.|.|.|++.
T Consensus       216 v~~~------DsG~Y~C~~~~~  231 (259)
T 3omz_A          216 LQLE------DSAKYFCALGES  231 (259)
T ss_dssp             CCGG------GCSEEEEEEESC
T ss_pred             CChh------HCEEEEEEEeCc
Confidence            8765      899999999864

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.76  E-value=1.8e-08  Score=77.10  Aligned_cols=87  Identities=11%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             CEEEEcCCC-CCc--cCeEEEeeEeccC------CCEEEEEccC-CeEe---ec--------ccCceEE-ee--CCcEEE
Q psy5697          47 PFRIKSAPG-GNR--TRGLELTRQTRYE------PSQLGWRFSN-NTVI---AY--------VKDLRIA-LS--NGSLMF  102 (145)
Q Consensus        47 P~~i~~p~~-~~~--~g~~L~C~a~G~P------~P~i~W~~~d-g~~i---~~--------~~~~~~~-~~--~GsL~i  102 (145)
                      +.+.+.|.+ .+.  ..++|.|.+.|.|      .|.|.|++.+ |..+   ..        ..+.... ..  +++|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            455565655 222  3399999999998      7999998743 3221   10        1111122 22  238999


Q ss_pred             cCCCCCCCCCCCCCeEEEEEEEcCCCceE--EEEEEEEe
Q psy5697         103 PPFPETGFRPDVHSTVYRCRASNEAGVIL--SRFVHVKA  139 (145)
Q Consensus       103 ~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~--s~~v~v~~  139 (145)
                      .++..+      |+|.|.|.|.|..+...  ...+.|..
T Consensus        86 ~~v~~~------DsG~Y~C~~~~~~~~~~~~~~~L~V~~  118 (264)
T 2gjj_A           86 GSVKAE------DLAVYYCQQYSNYPWTFGGGTRLEIKR  118 (264)
T ss_dssp             SSCCGG------GCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CCCCHH------HCEEEEEEEecCCccEecCCEEEEEEc
Confidence            988765      89999999999876432  23455543

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.76  E-value=1.7e-08  Score=69.16  Aligned_cols=61  Identities=10%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCceE-EeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDLRI-ALSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~~~-~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.|.|.+.|.|++.+ |.   .+..        .++... ...+  .+|.|.+++.+      |+|.|.|.+.
T Consensus        20 ~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~   93 (119)
T 2e27_L           20 KVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE------DAATYYCLQY   93 (119)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH------HCEEEEEEEc
Confidence            3999999999999999999743 22   1210        011111 1222  27999988765      8999999999


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      |.
T Consensus        94 ~~   95 (119)
T 2e27_L           94 DN   95 (119)
T ss_dssp             GG
T ss_pred             cC
Confidence            86

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.76  E-value=1.8e-08  Score=72.26  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             CeEEEeeEeccCCCE---EEEEccCCeEeec------c-----------cCceE------EeeCCcEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEPSQ---LGWRFSNNTVIAY------V-----------KDLRI------ALSNGSLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G~P~P~---i~W~~~dg~~i~~------~-----------~~~~~------~~~~GsL~i~~~~~~~~~~~  113 (145)
                      .+.|.|.+.|.|.|.   |+|+|.+ ..+..      .           .+...      ...+++|.|.++..+     
T Consensus        16 ~v~L~C~v~~~~~~~~~~V~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~-----   89 (218)
T 4frw_A           16 DAKLPCFYRGDSGEQVGQVAWARVD-AGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA-----   89 (218)
T ss_dssp             CEEECCEECCCTTCEEEEEEEEEEC-SSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGG-----
T ss_pred             CEEEEEEEEcCCCCCccEEEEEECC-CCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHH-----
Confidence            399999999999774   8998633 22110      0           00001      112457999988765     


Q ss_pred             CCCeEEEEEEEcCCCceEEE
Q psy5697         114 VHSTVYRCRASNEAGVILSR  133 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~~~s~  133 (145)
                       |+|.|.|.+.|..+.....
T Consensus        90 -D~G~Y~C~~~~~~~~~~~~  108 (218)
T 4frw_A           90 -DEGEYECRVSTFPAGSFQA  108 (218)
T ss_dssp             -GCEEEEEEEEEETTEEEEE
T ss_pred             -HCCceeEEEEeccCceeee
Confidence             8999999999988876444

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.76  E-value=5.3e-08  Score=64.99  Aligned_cols=73  Identities=14%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             EEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCceEEe-eC--CcEEEcCCCCCCC
Q psy5697          49 RIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDLRIAL-SN--GSLMFPPFPETGF  110 (145)
Q Consensus        49 ~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~~~~~-~~--GsL~i~~~~~~~~  110 (145)
                      +.+.|.+ .+..  .++|.|.+.+.|.+.|.|++.+ |.   .+..        .++..... .+  .+|.|.++..+  
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~--   81 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAE--   81 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTT--
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChh--
Confidence            3444554 2333  3999999999999999998743 22   1210        11111111 12  27999988766  


Q ss_pred             CCCCCCeEEEEEEEcCC
Q psy5697         111 RPDVHSTVYRCRASNEA  127 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~~  127 (145)
                          |+|.|.|.+.|..
T Consensus        82 ----DsG~Y~C~~~~~~   94 (108)
T 1qfw_M           82 ----DFADYHCGQTYNH   94 (108)
T ss_dssp             ----CCSEEEEEECSSS
T ss_pred             ----hCEEEEEEEccCC
Confidence                8999999999863

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.76  E-value=1e-07  Score=70.28  Aligned_cols=112  Identities=12%  Similarity=0.073  Sum_probs=59.3

Q ss_pred             eecCceeEeeccccCcccCCceeee--EEEeccCCCCCCCEEEE-cCCCCCc--cCeEEEeeEecc-CCC-EEEEEccCC
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGN--IVYSSRSENEHYPFRIK-SAPGGNR--TRGLELTRQTRY-EPS-QLGWRFSNN   82 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~P~~i~-~p~~~~~--~g~~L~C~a~G~-P~P-~i~W~~~dg   82 (145)
                      ..|+++|.|..........  .+|.  .+.. ......+|.+.. .|.....  ..+.|.|.+.|. |.| +|+|++ +|
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~--~~~~~~~L~V-~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-~g  162 (215)
T 1c5d_H           87 TEDTAIYFCTREDGWNYFD--YWGPGTMVTV-SSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNS-GA  162 (215)
T ss_dssp             GGGCEEEEEEECCSSSCSC--CBCCCEEEEE-CSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGG-GT
T ss_pred             cccCEEEEEEEecCCcccc--eEcCCEEEEe-cCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEcc-CC
Confidence            6788899998865421100  1111  1111 112234565544 4333222  338999999997 888 999964 66


Q ss_pred             eEeecccCceEEeeCCcEEEcC-CCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          83 TVIAYVKDLRIALSNGSLMFPP-FPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        83 ~~i~~~~~~~~~~~~GsL~i~~-~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..+...... ....+|+..+.. +...   ...| |.|+|.|+|..|..
T Consensus       163 ~~~~~~~~~-~~~~~g~~~~~s~L~~~---~~~~-g~ytC~v~n~~~~~  206 (215)
T 1c5d_H          163 LSSDVHTFP-AVLQSGLYTLTSSVTSS---TWPS-QTVTCNVAHPASST  206 (215)
T ss_dssp             TCCSCCBCC-CEEETTEEEEEEEEEES---STTT-SCCEEEEEEGGGTE
T ss_pred             ccCceEecC-cccCCCCEEEEEEEecc---cCCC-CeEEEEEEeCCCCc
Confidence            543211111 112235433211 1111   1114 99999999999875

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.75  E-value=9.5e-09  Score=85.97  Aligned_cols=71  Identities=21%  Similarity=0.373  Sum_probs=52.9

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEee-----------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIA-----------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~-----------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      ++|.|.+ .|.|.|.|+|++. +..+.           ...+......+|+|.|.+++.+      |+|.|+|.|.|..|
T Consensus       384 v~L~C~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~------D~G~Y~C~~~n~~~  456 (581)
T 3o3u_N          384 LVLKCKGAPKKPPQRLEWKLN-TGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQ------DEGIFRCQAMNRNG  456 (581)
T ss_dssp             EEECCTTCCSSSSCEEEEEEE-ETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGG------GCEEEEEEEECTTS
T ss_pred             EEEeeeecCCCCCceEEEEEc-CCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccc------cCeEEEEEEEcCCC
Confidence            8999999 8999999999864 33210           0122345667889999988765      89999999999999


Q ss_pred             ceEEEEEEEE
Q psy5697         129 VILSRFVHVK  138 (145)
Q Consensus       129 ~~~s~~v~v~  138 (145)
                      ...+..+.|.
T Consensus       457 ~~~~~~~~l~  466 (581)
T 3o3u_N          457 KETKSNYRVR  466 (581)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceeEEEEEEE
Confidence            8744444443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.75  E-value=1.9e-08  Score=79.08  Aligned_cols=73  Identities=14%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.+  .|.|+|++.+ |..+.                ...+...+..     +++|.|.++..+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   90 (344)
T 1za6_B           17 SVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSE------D   90 (344)
T ss_dssp             CEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcc------c
Confidence            399999999984  7899998753 43221                0112222222     238999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|+|.|.|..+.. ....+.|.
T Consensus        91 ~G~Y~C~~~n~~~~~~~~~~l~V~  114 (344)
T 1za6_B           91 TAVYFCTRSLNMAYWGQGTLVTVS  114 (344)
T ss_dssp             CEEEEEEETTTTCEECCCEEEEEC
T ss_pred             CEEEEEEEecCcceecCcEEEEEe
Confidence            999999999976543 23344444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.75  E-value=1.9e-08  Score=75.15  Aligned_cols=74  Identities=18%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             CeEEEeeEeccCCCE-----EEEEccCCeEe-----ec-ccCceEE-------------eeCCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEPSQ-----LGWRFSNNTVI-----AY-VKDLRIA-------------LSNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P~P~-----i~W~~~dg~~i-----~~-~~~~~~~-------------~~~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.|+|.     |+|++.++...     .. .......             ..+.+|.|.++..+      |
T Consensus        20 ~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~------D   93 (248)
T 3pv7_A           20 NVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLE------E   93 (248)
T ss_dssp             CEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGG------G
T ss_pred             CEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHH------H
Confidence            399999999999987     99987532211     00 0000000             12336999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +|.|+|.|.|..|.. ....+.|..
T Consensus        94 ~G~Y~C~~~~~~~~~~~~~~L~V~~  118 (248)
T 3pv7_A           94 AGEYRCEVVVTPLKAQGTVQLEVVA  118 (248)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CeEEEEEEEeCCccceeEEEEEEec
Confidence            999999999998875 333455543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.75  E-value=3e-08  Score=75.49  Aligned_cols=78  Identities=15%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccC-----CCEEEEEccC-CeE---eec--------ccCceEE-eeC--CcEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYE-----PSQLGWRFSN-NTV---IAY--------VKDLRIA-LSN--GSLMF  102 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P-----~P~i~W~~~d-g~~---i~~--------~~~~~~~-~~~--GsL~i  102 (145)
                      .+.+.+.|.+ .+..|  ++|.|.+.|.|     .+.|.|++.+ |..   +..        .++.... ..+  ++|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            3556666665 33333  99999999998     5999998753 321   110        1111122 222  37999


Q ss_pred             cCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697         103 PPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus       103 ~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .++..+      |+|.|.|.|.|..+.
T Consensus        95 ~~v~~~------DsG~Y~C~~~~~~~~  115 (268)
T 1x9q_A           95 NRVEAE------DLGVYFCSQSTHVPW  115 (268)
T ss_dssp             SSCCGG------GCEEEEEEECSSSSC
T ss_pred             CCCChh------HCEEEEEEEecCCCc
Confidence            988765      899999999998664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.74  E-value=3.4e-08  Score=74.87  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             eceee-eecCceeEeeccccC-cccCCceeeeEEEeccCCCCCCCEEE-EcCCC-CC--ccCeEEEeeEeccCCC--EEE
Q psy5697           5 HISTL-LADADTYIIADRSLF-PRPLGYLVGNIVYSSRSENEHYPFRI-KSAPG-GN--RTRGLELTRQTRYEPS--QLG   76 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~P~~i-~~p~~-~~--~~g~~L~C~a~G~P~P--~i~   76 (145)
                      +|..+ ..|+++|.|...... ....+... ...+........+|.+. ..|.. ..  +..+.|.|.+.|.|+|  +|+
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  181 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFGPGT-RLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  181 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEECCCE-EEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeCCcE-EEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEE
Confidence            34344 678899999875421 11100000 11111112233467544 44443 11  2338999999997765  999


Q ss_pred             EEccCCeEeecccCceEE---------eeCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCCCc
Q psy5697          77 WRFSNNTVIAYVKDLRIA---------LSNGS------LMFPPFPETGFRPDVH-STVYRCRASNEAGV  129 (145)
Q Consensus        77 W~~~dg~~i~~~~~~~~~---------~~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G~  129 (145)
                      |++ ||+.+....  ...         ..+|+      |.|.+...+      | .|.|+|.|+|....
T Consensus       182 W~~-~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~------d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          182 WWV-NGKEVHSGV--CTDPQPLKEQPALNDSRYSLSSRLRVSATFWQ------NPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEE-SSSEECTTE--EECSSCEESSTTCTTCCEEEEEEEEEEHHHHS------CTTCEEEEEEEECCBC
T ss_pred             EEE-CCEECCCCe--EeccccccccccCCCCcEEEEEEEEEcHHHhc------cCCCEEEEEEEcCCCC
Confidence            975 888775321  110         02343      444432211      4 89999999998654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.74  E-value=7.4e-08  Score=80.53  Aligned_cols=110  Identities=14%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             eecCceeEeeccccCccc-CCceeeeEEEeccCCCCCCCEEEEcCCCCCcc-C-eEEEeeEec-cCCCEEEEEccCCeEe
Q psy5697          10 LADADTYIIADRSLFPRP-LGYLVGNIVYSSRSENEHYPFRIKSAPGGNRT-R-GLELTRQTR-YEPSQLGWRFSNNTVI   85 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~P~~i~~p~~~~~~-g-~~L~C~a~G-~P~P~i~W~~~dg~~i   85 (145)
                      ..|.+.|.|...+..... ..... -.|..    ....|.+...+...... . +.|.|.+.| +|.|+|+|+ +||+++
T Consensus       441 ~~D~G~Y~C~~~n~~~~~~~~~~~-l~V~~----~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~-~~g~~l  514 (581)
T 3o3u_N          441 IQDEGIFRCQAMNRNGKETKSNYR-VRVYQ----IPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWH-LDGKPL  514 (581)
T ss_dssp             GGGCEEEEEEEECTTSCEEEEEEE-EEEEB----CCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEE-ETTEEC
T ss_pred             cccCeEEEEEEEcCCCceeEEEEE-EEEEc----CCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEE-ECCEEC
Confidence            678888988876533222 11111 00111    12345544333322222 2 568999998 699999997 588887


Q ss_pred             ecccCceEE----e---eCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          86 AYVKDLRIA----L---SNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        86 ~~~~~~~~~----~---~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ........+    .   .+|      +|.|.++.+++     +.|.|+|.|+|.++..
T Consensus       515 ~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d-----~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          515 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGD-----PRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             CTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSC-----SCCCEEEEEECSSCSS
T ss_pred             CCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccC-----CCceEEEEEeccCCCC
Confidence            643222111    1   223      58887765432     5899999999997543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.74  E-value=3.6e-08  Score=75.84  Aligned_cols=63  Identities=11%  Similarity=0.207  Sum_probs=44.0

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .|.|.|++.+ |..+.                ..++......     +++|.|.++..+      |
T Consensus        43 ~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D  116 (282)
T 1qok_A           43 SVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSE------D  116 (282)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             eEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChh------h
Confidence            399999999996  6999998753 22111                0111222221     247999988765      8


Q ss_pred             CeEEEEEEEcCCC
Q psy5697         116 STVYRCRASNEAG  128 (145)
Q Consensus       116 ~G~Y~C~A~N~~G  128 (145)
                      +|.|+|.|.|..|
T Consensus       117 sG~Y~C~~~n~~g  129 (282)
T 1qok_A          117 TAVYYCNEGTPTG  129 (282)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEeccCCC
Confidence            9999999999987

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.73  E-value=1.9e-08  Score=75.04  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEE-EEcCCCC-C--ccCeEEEeeEecc-CCC-E
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFR-IKSAPGG-N--RTRGLELTRQTRY-EPS-Q   74 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~-i~~p~~~-~--~~g~~L~C~a~G~-P~P-~   74 (145)
                      +|..+ ..|++.|.|....... .....++.   ..+........+|.+ +..|... .  +..+.|.|.+.|. |+| +
T Consensus        79 ~I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  157 (245)
T 4ei6_B           79 KIQPTALEDSAVYFCASSFWGA-YAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  157 (245)
T ss_dssp             EECSCCGGGCEEEEEEEECSST-TCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EECCCCHhHCEEEEEEEccCCC-cceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeE
Confidence            34444 7788899988753110 00001111   111111112345654 4444431 1  2338999999994 545 8


Q ss_pred             EEEEccCCeEeecccCceEEe---------eCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCCCc
Q psy5697          75 LGWRFSNNTVIAYVKDLRIAL---------SNGS------LMFPPFPETGFRPDVH-STVYRCRASNEAGV  129 (145)
Q Consensus        75 i~W~~~dg~~i~~~~~~~~~~---------~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G~  129 (145)
                      |+|++ ||..+....  ....         .+|+      |.|.+...+      | .|.|+|.|+|....
T Consensus       158 v~W~~-~g~~l~~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          158 LSWWV-NGKEVHSGV--CTDPQPLKEQPALNDSRYALSSRLRVSATFWQ------NPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEEE-TTEEECTTE--EECSSCEESSTTSTTCCEEEEEEEEEEHHHHS------CTTCEEEEEEEECCBC
T ss_pred             EEEEE-CCEECCCCc--ccccccccccccCCCCCEEEEEEEEEcHHHhc------cCCCeEEEEEEECCCC
Confidence            99975 888875321  1100         2443      566543222      4 89999999998543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.73  E-value=3.8e-08  Score=76.61  Aligned_cols=108  Identities=16%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             eecCceeEeeccccC-cccCCceeeeEEEeccCCCCCCCEEEE-cCCC-CC-ccCeEEEeeEecc-CCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLF-PRPLGYLVGNIVYSSRSENEHYPFRIK-SAPG-GN-RTRGLELTRQTRY-EPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~P~~i~-~p~~-~~-~~g~~L~C~a~G~-P~P-~i~W~~~dg~   83 (145)
                      ..|++.|.|...+.. ...   ..  ...........+|.+.. .+.. .. +..+.|.|.+.|. |++ +|+|+ +||.
T Consensus       187 ~~D~G~Y~C~a~n~~~~~~---~~--~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~-k~g~  260 (323)
T 2wqr_A          187 WIEGETYQCRVTHPHLPRA---LM--RSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWL-HNEV  260 (323)
T ss_dssp             HHTTCCEEEEEECTTSSSC---EE--EEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEE-ETTE
T ss_pred             ccCCCCEEEEEECCCCCCC---ee--eEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEE-ECCE
Confidence            357778888765432 111   11  11111112345675544 3332 22 2238999999995 443 89997 5888


Q ss_pred             EeecccCc---eEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          84 VIAYVKDL---RIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        84 ~i~~~~~~---~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+......   .....+|      +|.|.++..+      |.|.|+|.|+|..+.
T Consensus       261 ~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          261 QLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWE------QKDEFICRAVHEAAS  309 (323)
T ss_dssp             ECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHH------HCCCEEEEEECTTST
T ss_pred             ECCCCceeecCcccCCCCcEEEEEEEEEChHHcc------CCCEEEEEEEeCCCC
Confidence            87532100   1112233      5777665433      789999999999876

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.73  E-value=3.9e-08  Score=66.16  Aligned_cols=61  Identities=15%  Similarity=0.107  Sum_probs=41.2

Q ss_pred             CeEEEeeEecc--CCCEEEEEccC-Ce----EeecccCceEEe--e--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSN-NT----VIAYVKDLRIAL--S--NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~d-g~----~i~~~~~~~~~~--~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .++|.|.+.|.  |.+.+.|++.+ |.    .+....+.....  .  +.+|.|.++..+      |+|.|.|.+.|.
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~~~   88 (111)
T 2ywz_A           17 SLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVE------DSGTYKCQADYS   88 (111)
T ss_dssp             CEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEEEEC
T ss_pred             CEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChh------cCEEEEEEEEcC
Confidence            39999999987  67899998742 32    121111221111  1  237999988765      899999999993

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.72  E-value=1.7e-08  Score=76.59  Aligned_cols=79  Identities=9%  Similarity=0.042  Sum_probs=48.9

Q ss_pred             CCC-EEEEcCCCC--CccC--eEEEeeEecc---CCC-EEEEEccCCeEeecc-cCceEEe------eCCcEEEcCCCCC
Q psy5697          45 HYP-FRIKSAPGG--NRTR--GLELTRQTRY---EPS-QLGWRFSNNTVIAYV-KDLRIAL------SNGSLMFPPFPET  108 (145)
Q Consensus        45 ~~P-~~i~~p~~~--~~~g--~~L~C~a~G~---P~P-~i~W~~~dg~~i~~~-~~~~~~~------~~GsL~i~~~~~~  108 (145)
                      .+| +++..|...  ...|  +.|.|.+.|.   |.| .|+|++.+ ..+... .......      ..++|.|.++..+
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~   92 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDD-VEVHTAQTHAPEKQSNSTLRSVSELPIVERDWL   92 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESS-CEECCCEECCCEECTTSCEEEEEEEECCHHHHH
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECC-ccccCcccccceEcCCCcEEEEEEEEEEhhHcc
Confidence            344 555544333  3344  8999999998   888 99998644 443211 0001111      2236888766544


Q ss_pred             CCCCCCCCeEEEEEEEcCCCce
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                            |+|.|+|.|.|..|..
T Consensus        93 ------D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           93 ------NGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             ------TTCCEEEEEECSSSSS
T ss_pred             ------CCCeEEEEEecccCCC
Confidence                  7999999999999864

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.72  E-value=2e-08  Score=73.27  Aligned_cols=61  Identities=11%  Similarity=0.052  Sum_probs=42.4

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee-----------cccCceE-EeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDLRI-ALSNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~~~-~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+.|.|.|.|+|++.+ |..+.           ..+.... ...++  +|.|.++..+      |+|.|+|.|.
T Consensus        16 ~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   89 (212)
T 1nfd_E           16 TVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPE------DEAAYYCLSS   89 (212)
T ss_dssp             CCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG------GCSEEEEEEE
T ss_pred             cEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcc------cCEEEEEEEE
Confidence            3899999999999999998643 43321           0011222 22223  7999988765      8999999999


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      |.
T Consensus        90 n~   91 (212)
T 1nfd_E           90 YG   91 (212)
T ss_dssp             ET
T ss_pred             cc
Confidence            83

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.72  E-value=1.6e-08  Score=74.99  Aligned_cols=63  Identities=11%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee--------------ccc-CceEEe---eCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA--------------YVK-DLRIAL---SNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~~~-~~~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|. .|.|.|.|+|++.+ |....              ..+ +.....   .+.+|.|.++..+      |+|.|+
T Consensus        17 ~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------DsG~Y~   89 (238)
T 2p1y_A           17 KVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPS------QTSVYF   89 (238)
T ss_dssp             CEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGG------GCEEEE
T ss_pred             EEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcc------cCeeEE
Confidence            3999999 89999999998742 22110              011 111221   1347999988765      899999


Q ss_pred             EEEEcCCCc
Q psy5697         121 CRASNEAGV  129 (145)
Q Consensus       121 C~A~N~~G~  129 (145)
                      |.|.|..|.
T Consensus        90 C~~~~~~g~   98 (238)
T 2p1y_A           90 CASGDLGQT   98 (238)
T ss_dssp             EEEEC----
T ss_pred             EEEEeCCCc
Confidence            999999773

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.72  E-value=2.2e-08  Score=75.08  Aligned_cols=81  Identities=7%  Similarity=-0.071  Sum_probs=51.1

Q ss_pred             CCCCCCE-EEEcCCC-C--CccCeEEEeeEecc-CC-C-EEEEEccCCeEe-ecccCceEEeeCC------cEEEcCCCC
Q psy5697          42 ENEHYPF-RIKSAPG-G--NRTRGLELTRQTRY-EP-S-QLGWRFSNNTVI-AYVKDLRIALSNG------SLMFPPFPE  107 (145)
Q Consensus        42 ~~~~~P~-~i~~p~~-~--~~~g~~L~C~a~G~-P~-P-~i~W~~~dg~~i-~~~~~~~~~~~~G------sL~i~~~~~  107 (145)
                      ....+|. ++..|.. .  .+..+.|.|.+.|. |. | .|+|+ +||..+ ...........+|      +|.|.++..
T Consensus         8 ~~~~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~-~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~   86 (231)
T 2w59_A            8 QSCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWT-REKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDW   86 (231)
T ss_dssp             ----CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEE-CSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHH
T ss_pred             CCCCCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEE-cCCeeccccccccceECCCCcEEEEEEEEecchhc
Confidence            3345564 4566655 2  23349999999995 74 6 99998 588766 3222111222344      488876654


Q ss_pred             CCCCCCCCCeEEEEEEEcCCCc
Q psy5697         108 TGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus       108 ~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +      |+|.|+|.|.|..+.
T Consensus        87 ~------D~g~Y~C~~~~~~~~  102 (231)
T 2w59_A           87 L------SGERFTCTVQHEELP  102 (231)
T ss_dssp             H------TTCCEEEEEECTTCS
T ss_pred             c------CCCEEEEEEEcCCCC
Confidence            3      799999999999875

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.72  E-value=7.3e-08  Score=70.00  Aligned_cols=61  Identities=20%  Similarity=0.140  Sum_probs=43.3

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEee-------------cccCceEE-eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIA-------------YVKDLRIA-LSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~-------------~~~~~~~~-~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.+.+ .+.+.|.|++.++..+.             ..++...+ ..+|+|.|.+++.+      |+|.|+|.+.|
T Consensus        17 vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~------D~G~Y~C~v~~   90 (180)
T 2dru_A           17 VTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKE------DRGDYYMRMLH   90 (180)
T ss_dssp             EEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGG------GCEEEEEEEES
T ss_pred             EEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHH------HCeEEEEEEEc
Confidence            999999865 34799999874333321             01122233 46789999988765      89999999988


Q ss_pred             CC
Q psy5697         126 EA  127 (145)
Q Consensus       126 ~~  127 (145)
                      ..
T Consensus        91 ~~   92 (180)
T 2dru_A           91 ET   92 (180)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.72  E-value=2.2e-08  Score=73.45  Aligned_cols=109  Identities=14%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             CceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCC-C-Ccc-CeEEEeeEecc-CC-CEEEEEccCCeEeec
Q psy5697          13 ADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPG-G-NRT-RGLELTRQTRY-EP-SQLGWRFSNNTVIAY   87 (145)
Q Consensus        13 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~-~-~~~-g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~   87 (145)
                      ++.|.|...+.....  ...+. + ........+|.+...++. . ... .+.|.|.+.|. |+ ++|+|+ +||..+..
T Consensus        80 ~g~Y~C~a~n~~~~~--~~~~~-v-~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~-k~g~~~~~  154 (207)
T 1l6x_A           80 GKEYKCKVSNKALPA--PIEKT-I-SKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWE-SNGQPENN  154 (207)
T ss_dssp             TCCEEEEEECTTSSS--CEEEE-E-CCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE-ETTEEECC
T ss_pred             CceEEEEEEcCcCCc--ceEEE-e-ccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEE-ECCeeccC
Confidence            778888775532211  11211 1 111134556765544443 1 122 28999999995 54 399997 48887753


Q ss_pred             ccC-ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          88 VKD-LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        88 ~~~-~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ... ......+|++.+..   +...   ...|.|.|+|.|+|....
T Consensus       155 ~~~~~~~~~~~gt~~~~s~l~i~~~---~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          155 YKTTPPVLDSDGSFFLYSKLTVDKS---RWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEECCCEECTTSCEEEEEEEEEEHH---HHHTTCCEEEEEECTTSG
T ss_pred             ccccCceECCCCCEEEEEEEEECHH---HcCCCCEEEEEEEcCCcC
Confidence            211 11234567655432   2111   012589999999998654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.72  E-value=2e-08  Score=76.07  Aligned_cols=63  Identities=16%  Similarity=0.094  Sum_probs=43.4

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee----------cccCceEE--e--eCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA----------YVKDLRIA--L--SNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~----------~~~~~~~~--~--~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .++|.|.+.|.|.|.|.|++.+ +..   +.          ...+....  .  .+++|.|.++..+      |+|.|.|
T Consensus        20 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------DsG~Y~C   93 (256)
T 3tf7_C           20 SLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRS------DSAVYFC   93 (256)
T ss_dssp             CEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGG------GCSEEEE
T ss_pred             eEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcc------cCEEEEE
Confidence            3999999999999999998732 211   11          01111111  1  1237999988765      8999999


Q ss_pred             EEEcCCC
Q psy5697         122 RASNEAG  128 (145)
Q Consensus       122 ~A~N~~G  128 (145)
                      .|.|..|
T Consensus        94 ~~~~~~~  100 (256)
T 3tf7_C           94 AVSAKGT  100 (256)
T ss_dssp             EEECTTC
T ss_pred             EEecCCC
Confidence            9999876

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.71  E-value=1.3e-08  Score=72.87  Aligned_cols=64  Identities=16%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCe-Eeecc-----------cCceEEe----eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNT-VIAYV-----------KDLRIAL----SNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~-~i~~~-----------~~~~~~~----~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +.|.|.+.|.|.|.|+|++.+.. .+...           .......    .+|  +|.|.++..+      |+|.|+|.
T Consensus        13 v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~   86 (184)
T 2ny1_B           13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE------DSDTYICE   86 (184)
T ss_dssp             EEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGG------GCEEEEEE
T ss_pred             EEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHH------HCEEEEEE
Confidence            89999999999999999864432 22110           1111111    334  5999988765      89999999


Q ss_pred             EEcCCCce
Q psy5697         123 ASNEAGVI  130 (145)
Q Consensus       123 A~N~~G~~  130 (145)
                      |.|..|.+
T Consensus        87 ~~~~~~~~   94 (184)
T 2ny1_B           87 VEDQKEEV   94 (184)
T ss_dssp             ETTEEEEE
T ss_pred             EEcCCCcE
Confidence            99997744

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.71  E-value=1.3e-08  Score=82.49  Aligned_cols=83  Identities=12%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             CCEE-EEcCCCCC--cc--CeEEEeeEeccC----CCEEEEEccCCeEeecccC-ceEEee------CCcEEEcCCCCCC
Q psy5697          46 YPFR-IKSAPGGN--RT--RGLELTRQTRYE----PSQLGWRFSNNTVIAYVKD-LRIALS------NGSLMFPPFPETG  109 (145)
Q Consensus        46 ~P~~-i~~p~~~~--~~--g~~L~C~a~G~P----~P~i~W~~~dg~~i~~~~~-~~~~~~------~GsL~i~~~~~~~  109 (145)
                      +|.+ +..|....  ..  .+.|.|.+.|.|    .++|+|++ ||..+..... ......      .++|.|.++..+ 
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-  315 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV-NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM-  315 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH-
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE-CCccccCcccccceeCCCCcEEEEEEEEEcHHHhc-
Confidence            6765 45443322  23  389999999994    36999985 7776643211 112222      347898877654 


Q ss_pred             CCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697         110 FRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                           |+|.|+|.|.|..|.. ..+.+
T Consensus       316 -----d~G~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          316 -----SGKEFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             -----TTCEEEEEEECTTCSSCEEEEE
T ss_pred             -----cCCcEEEEEEcCCCCCceEEEE
Confidence                 8999999999999976 34444

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.71  E-value=1.7e-08  Score=77.75  Aligned_cols=62  Identities=11%  Similarity=0.099  Sum_probs=41.1

Q ss_pred             CeEEEeeEec-cC-CCEEEEEcc-CCeEeec-----------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTR-YE-PSQLGWRFS-NNTVIAY-----------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G-~P-~P~i~W~~~-dg~~i~~-----------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+.|.|.+.| .+ .+.+.|++. +|..+..           .+..... ..++  +|.|.++..+      |+|.|.|.
T Consensus       156 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~  229 (280)
T 3fku_X          156 TATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPE------DEADYYCS  229 (280)
T ss_dssp             CEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGG------GCSEEEEE
T ss_pred             CEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHH------HCEEEEEE
Confidence            3999999999 55 489999863 2322210           0111111 2222  5999888765      89999999


Q ss_pred             EEcCC
Q psy5697         123 ASNEA  127 (145)
Q Consensus       123 A~N~~  127 (145)
                      +.|..
T Consensus       230 ~~~~~  234 (280)
T 3fku_X          230 TWDSS  234 (280)
T ss_dssp             EEETT
T ss_pred             EecCC
Confidence            99987

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.71  E-value=1e-07  Score=81.50  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             CeEEEeeEec--cCCCEEEEEccCCeEeecccCc----------eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTR--YEPSQLGWRFSNNTVIAYVKDL----------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G--~P~P~i~W~~~dg~~i~~~~~~----------~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+.|.|.+.|  .|.+.|+|++ +|..+......          ......++|.|.++..+      |+|.|+|.|.|..
T Consensus       241 ~v~L~C~~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~~~~~  313 (772)
T 3v2a_R          241 KLVLNCTARTELNVGIDFNWEY-PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS------DQGLYTCAASSGL  313 (772)
T ss_dssp             CEEEEEEEEECTTCCCEEEEEC-C--------CEEEEC-----CCCEEEEEEEEESSCCST------TCSEEEEEEECSS
T ss_pred             cEEEEEEEecCCCCceeEEEec-CCccCCCceeeeccccccccccceEEEEEEEECcCCcC------CCeEEEEEEEcCC
Confidence            3999999998  5567899985 55543321111          01123347999887655      8999999999999


Q ss_pred             Cce-EEEEEEEEe
Q psy5697         128 GVI-LSRFVHVKA  139 (145)
Q Consensus       128 G~~-~s~~v~v~~  139 (145)
                      |.. .+..+.|..
T Consensus       314 ~~~~~~~~l~V~~  326 (772)
T 3v2a_R          314 MTKKNSTFVRVHE  326 (772)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             cceeEEEEEEEeC
Confidence            975 344565554

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.71  E-value=1.9e-08  Score=73.28  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeEee---c--------ccCceE---EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTVIA---Y--------VKDLRI---ALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~i~---~--------~~~~~~---~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +.|.|.+.  |.|.|.|++.+ |..+.   .        ......   ...+++|.|.++..+      |+|.|+|.|.|
T Consensus        18 v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~~   89 (211)
T 3tv3_L           18 ITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTD------DEAVYYCGSLV   89 (211)
T ss_dssp             EEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGG------GCEEEEEEEEE
T ss_pred             EEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChh------HCEEEEEEEec
Confidence            99999998  99999998732 22211   0        111111   112337999988766      89999999999


Q ss_pred             CCC
Q psy5697         126 EAG  128 (145)
Q Consensus       126 ~~G  128 (145)
                      ..|
T Consensus        90 ~~~   92 (211)
T 3tv3_L           90 GNW   92 (211)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            998

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.70  E-value=2.6e-08  Score=74.23  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             eceee-eecCceeEeeccccCcccC---CceeeeEEEe-ccCCCCCCCEEEE-cCCCCCccC--eEEEeeEeccCCC--E
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPL---GYLVGNIVYS-SRSENEHYPFRIK-SAPGGNRTR--GLELTRQTRYEPS--Q   74 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~-~~~~~~~~P~~i~-~p~~~~~~g--~~L~C~a~G~P~P--~   74 (145)
                      +|..+ ..|.++|.|..........   ..+++..+.. .......+|.+.. .|......|  +.|.|.+.|.+++  +
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~  165 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  165 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred             EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence            44444 6788899998754310000   0112221111 1113345676663 443322223  8999999986543  5


Q ss_pred             EEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          75 LGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        75 i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ++|+ ++|..+...........+|      +|.|.+...      .| |.|+|.|+|..+..
T Consensus       166 v~W~-~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~------~~-g~ytC~v~~~~~~~  219 (232)
T 3qhz_H          166 VSWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL------GT-QTYICNVNHKPSNT  219 (232)
T ss_dssp             EEEG-GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG------GT-CCCEEEEEEGGGTE
T ss_pred             EEEE-ECCEecceeeccceeCCCCCEEEEEEEEEchhhc------CC-CEEEEEEEeCCCCc
Confidence            7896 4665322111111122233      466655432      26 99999999998775

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.70  E-value=8.2e-08  Score=69.76  Aligned_cols=64  Identities=19%  Similarity=0.064  Sum_probs=43.2

Q ss_pred             CeEEEeeEecc-------CCCEEEEEccCCe-----Eee----------cccCceEEee-----CCcEEEcCCCCCCCCC
Q psy5697          60 RGLELTRQTRY-------EPSQLGWRFSNNT-----VIA----------YVKDLRIALS-----NGSLMFPPFPETGFRP  112 (145)
Q Consensus        60 g~~L~C~a~G~-------P~P~i~W~~~dg~-----~i~----------~~~~~~~~~~-----~GsL~i~~~~~~~~~~  112 (145)
                      .+.|.|.+.+.       |.+.|.|++.+..     .+.          ...+......     +++|.|.++..+    
T Consensus        17 ~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~----   92 (214)
T 2zg1_A           17 CVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARME----   92 (214)
T ss_dssp             CEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGG----
T ss_pred             cEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHh----
Confidence            39999999875       6899999864321     111          0111222222     348999988765    


Q ss_pred             CCCCeEEEEEEEcCCCc
Q psy5697         113 DVHSTVYRCRASNEAGV  129 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~  129 (145)
                        |+|.|+|.+.|..|.
T Consensus        93 --D~G~Y~C~~~~~~~~  107 (214)
T 2zg1_A           93 --DTGSYFFRVERGRDV  107 (214)
T ss_dssp             --GCEEEEEEEEETTTE
T ss_pred             --hCceEEEEEEcCCCc
Confidence              899999999998743

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.70  E-value=4.5e-08  Score=72.68  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=44.1

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .+.|.|++.+ |..+.                ..++......     +++|.|.++..+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D   90 (225)
T 1op3_H           17 SLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE------D   90 (225)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             CEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh------h
Confidence            399999999988  7999998754 32211                0112222221     248999988765      8


Q ss_pred             CeEEEEEEEcCCC
Q psy5697         116 STVYRCRASNEAG  128 (145)
Q Consensus       116 ~G~Y~C~A~N~~G  128 (145)
                      +|.|.|.+.|..|
T Consensus        91 ~G~Y~C~~~~~~~  103 (225)
T 1op3_H           91 TAIYYCARKGSDR  103 (225)
T ss_dssp             CEEEEEEEECCSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999999976

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.69  E-value=1.2e-08  Score=78.68  Aligned_cols=75  Identities=9%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeeccc---CceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          45 HYPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVK---DLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        45 ~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~---~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+|.|...|...+  +..++|.|.+.+ +.+.|.|+| ||..+....   .......+++|.|.++..+      |+|.|
T Consensus         6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~-~~~~~~W~k-~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y   77 (257)
T 1b6u_A            6 RKPSLLAHPGPLVKSEETVILQCWSDV-RFQHFLLHR-EGKFKDTLHLIGEHHDGVSKANFSIGPMMQD------LAGTY   77 (257)
T ss_dssp             CCCEECCBSCSEEESSCCEEEEEEESS-CCSEEEEEE-ESTTCEEEEEECBCCTTCEEEEEEECSCCTT------TCEEE
T ss_pred             CCCEEEEcCCCEecCCCCEEEEEecCC-CCcEEEEEE-CCCCCCcceeeeeccCCCceEEEEeecCCcc------cCEEE
Confidence            3567766665422  233999999986 678999985 554432110   0000123568999888765      89999


Q ss_pred             EEEEEcCC
Q psy5697         120 RCRASNEA  127 (145)
Q Consensus       120 ~C~A~N~~  127 (145)
                      +|.|.|..
T Consensus        78 ~C~a~~~~   85 (257)
T 1b6u_A           78 RCYGSVTH   85 (257)
T ss_dssp             EEEEECSS
T ss_pred             EEeEeccC
Confidence            99999763

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.68  E-value=5e-08  Score=72.73  Aligned_cols=63  Identities=14%  Similarity=0.177  Sum_probs=43.4

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee-----c-----------ccCceEEe-----eCCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA-----Y-----------VKDLRIAL-----SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~-----~-----------~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .+.|.|++.+ |..+.     .           .++.....     .+++|.|.+++.+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D   90 (227)
T 1mju_H           17 SVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD------D   90 (227)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             CEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcc------c
Confidence            399999999988  7999998754 32211     0           11222222     1248999988765      8


Q ss_pred             CeEEEEEEEcCCC
Q psy5697         116 STVYRCRASNEAG  128 (145)
Q Consensus       116 ~G~Y~C~A~N~~G  128 (145)
                      +|.|.|.+.|..+
T Consensus        91 ~G~Y~C~~~~~~~  103 (227)
T 1mju_H           91 SAVYYCANKLGWF  103 (227)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             CEEEEEEECCCCc
Confidence            9999999999743

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.68  E-value=1.3e-07  Score=64.44  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             CeEEEeeEeccCCC----EEEEEccC---------------CeEeec---ccCceEEeeC--------------CcEEEc
Q psy5697          60 RGLELTRQTRYEPS----QLGWRFSN---------------NTVIAY---VKDLRIALSN--------------GSLMFP  103 (145)
Q Consensus        60 g~~L~C~a~G~P~P----~i~W~~~d---------------g~~i~~---~~~~~~~~~~--------------GsL~i~  103 (145)
                      .+.|.|...+.+.+    .|.|++.+               |..+..   ..+......+              .+|.|.
T Consensus        19 ~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~sL~I~   98 (128)
T 3r0n_A           19 TVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALH   98 (128)
T ss_dssp             CEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBCCEEEC
T ss_pred             CEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCeEEEEc
Confidence            39999999998877    89998742               222211   1112222222              289999


Q ss_pred             CCCCCCCCCCCCCeEEEEEEEc-CCCce
Q psy5697         104 PFPETGFRPDVHSTVYRCRASN-EAGVI  130 (145)
Q Consensus       104 ~~~~~~~~~~~d~G~Y~C~A~N-~~G~~  130 (145)
                      +++.+      |+|.|.|.+.+ ..|..
T Consensus        99 ~v~~~------D~G~Y~C~v~~~~~g~~  120 (128)
T 3r0n_A           99 GLTVE------DEGNYTCEFATFPKGSV  120 (128)
T ss_dssp             SCCGG------GCEEEEEEEEEETTEEE
T ss_pred             cCCch------hCeEEEEEEEeCCCCCc
Confidence            98766      89999997654 56765

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.67  E-value=3.7e-08  Score=72.28  Aligned_cols=66  Identities=14%  Similarity=0.150  Sum_probs=44.1

Q ss_pred             eEEEeeEeccCC--C--EEEEEccCCeEeeccc-CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEP--S--QLGWRFSNNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~--P--~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|.|+  |  .|+|++ ||.++.... .......+|++.+..   +...+   ..|+|.|+|.|.|..|..
T Consensus        21 v~L~C~~~g~~p~~~~~~v~W~k-~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d---~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           21 PEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD---WLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CEEEEEEEEECSSSCCCEEEEEE-TTEEECCCEECCCEECTTSCEEEEEEEECCHHH---HHTTCCEEEEEECTTSSS
T ss_pred             eEEEEEEecccCCCCCeEEEEEE-CCccccCcccCCceeccCCcEEEEEEEEEEHHH---ccCCceEEEEEEcCcCCc
Confidence            999999999874  4  999985 777664321 112345567766643   22221   114999999999998875

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.67  E-value=3.3e-08  Score=76.04  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             eecCceeEeeccccCc-------ccCC-ceeeeEEEe-ccCCCCCCCEEEE-cCCCCCcc--CeEEEeeEecc-CCC-EE
Q psy5697          10 LADADTYIIADRSLFP-------RPLG-YLVGNIVYS-SRSENEHYPFRIK-SAPGGNRT--RGLELTRQTRY-EPS-QL   75 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p-------~~~~-~~~~~~~~~-~~~~~~~~P~~i~-~p~~~~~~--g~~L~C~a~G~-P~P-~i   75 (145)
                      ..|.++|.|.......       .... ..+|..+.- .......+|.+.. .|......  .+.|.|.+.|. |.| +|
T Consensus        88 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v  167 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  167 (257)
T ss_dssp             GGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEE
T ss_pred             hhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEE
Confidence            6788899988755321       0000 022221111 1111234565543 33322222  38999999996 888 99


Q ss_pred             EEEccCCeEeecccCceEEeeCCc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          76 GWRFSNNTVIAYVKDLRIALSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        76 ~W~~~dg~~i~~~~~~~~~~~~Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +|+ +||..+...........+|+      |.|.+...      .| |.|+|.|+|..+.
T Consensus       168 ~W~-k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~------~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          168 SWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL------GT-QTYICNVNHKPSN  219 (257)
T ss_dssp             EET-TTTCCSSCEECCCEECTTSCEEEEEECCCC--------------CEEEEEEEGGGT
T ss_pred             EEe-eCCCcCCcEecCCeEcCCCCEEEEEEEEEccccc------CC-CeEEEEEEecCCC
Confidence            996 57765321111112233443      44433221      15 9999999997554

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.67  E-value=9.2e-08  Score=65.43  Aligned_cols=62  Identities=8%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             CeEEEeeEe---ccCCCEEEEEccCCeE----eec------------------------ccCceEEee--CCcEEEcCCC
Q psy5697          60 RGLELTRQT---RYEPSQLGWRFSNNTV----IAY------------------------VKDLRIALS--NGSLMFPPFP  106 (145)
Q Consensus        60 g~~L~C~a~---G~P~P~i~W~~~dg~~----i~~------------------------~~~~~~~~~--~GsL~i~~~~  106 (145)
                      .++|.|.+.   +.+.+.|.|++.+...    +..                        ..+......  +++|.|.++.
T Consensus        21 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~sL~I~~v~  100 (135)
T 1xt5_A           21 TVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH  100 (135)
T ss_dssp             CEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTSCCEEECSCC
T ss_pred             CEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCCCeEEECCCC
Confidence            399999975   4789999999754221    110                        001112222  3689999887


Q ss_pred             CCCCCCCCCCeEEEEEEEcCC
Q psy5697         107 ETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       107 ~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+      |+|.|.|.+.|..
T Consensus       101 ~~------D~G~Y~C~v~~~~  115 (135)
T 1xt5_A          101 PQ------DGGRYWCQVAQWS  115 (135)
T ss_dssp             GG------GCEEEEEEEECSS
T ss_pred             hh------hCcEEEEEEEcCC
Confidence            66      8999999999964

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.66  E-value=3.8e-08  Score=74.78  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             eceee-eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEE-EEcCCC-CC--ccCeEEEeeEec-cCCC-E
Q psy5697           5 HISTL-LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFR-IKSAPG-GN--RTRGLELTRQTR-YEPS-Q   74 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~-i~~p~~-~~--~~g~~L~C~a~G-~P~P-~   74 (145)
                      +|..+ ..|+++|.|......... ...++.   ..+........+|.+ +..|.. ..  +..+.|.|.+.| .|.| +
T Consensus       104 ~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  182 (270)
T 3qib_D          104 EIQSSEAGDSALYLCASSLNWSQD-TQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  182 (270)
T ss_dssp             EESSCCGGGCEEEEEEEESCTTCC-CCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EECCCCHhHCeEEEEEEecCCCcc-ceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeE
Confidence            33333 678899999875421100 011111   111112223346654 444443 11  233899999999 7777 8


Q ss_pred             EEEEccCCeEeecccCce-------EEeeCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCCCc
Q psy5697          75 LGWRFSNNTVIAYVKDLR-------IALSNGS------LMFPPFPETGFRPDVH-STVYRCRASNEAGV  129 (145)
Q Consensus        75 i~W~~~dg~~i~~~~~~~-------~~~~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~G~  129 (145)
                      |+|++ ||+.+.......       ....+|+      |.|.+...+      | .|.|+|.|+|....
T Consensus       183 v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~------d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          183 LSWWV-NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQ------NPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EEEEE-TTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHH------STTCEEEEEEEECCBC
T ss_pred             EEEEE-CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhc------cCCCeEEEEEEecCCC
Confidence            99974 888875321000       0002343      444433211      4 89999999998653

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.66  E-value=3.4e-08  Score=73.66  Aligned_cols=63  Identities=16%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             CeEEEeeEeccCCCEEEEEcc---------------CCeEeecc--cCceEEe--e--CCcEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS---------------NNTVIAYV--KDLRIAL--S--NGSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~---------------dg~~i~~~--~~~~~~~--~--~GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+.|.|.+.|.|.|.|.|++.               ++......  ++.....  .  +.+|.|.++..+      |+|.
T Consensus        18 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~------D~G~   91 (246)
T 4dzb_B           18 SVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE------DSSF   91 (246)
T ss_dssp             CEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG------GCEE
T ss_pred             cEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH------HCEE
Confidence            399999999999999999862               11111110  0111221  1  237999988765      8999


Q ss_pred             EEEEEEcCCC
Q psy5697         119 YRCRASNEAG  128 (145)
Q Consensus       119 Y~C~A~N~~G  128 (145)
                      |.|.|.|..+
T Consensus        92 Y~C~~~~~~~  101 (246)
T 4dzb_B           92 YICSARTSGD  101 (246)
T ss_dssp             EEEEECCSSG
T ss_pred             EEEEEecCCC
Confidence            9999998765

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.65  E-value=1.4e-07  Score=62.78  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=44.5

Q ss_pred             eEEEeeEeccCCC-----EEEEEccCCeEee---c-----------ccCceE-EeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          61 GLELTRQTRYEPS-----QLGWRFSNNTVIA---Y-----------VKDLRI-ALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        61 ~~L~C~a~G~P~P-----~i~W~~~dg~~i~---~-----------~~~~~~-~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +.|.|...+.|.+     .|.|++.+..++.   .           ..+... ...+++|.|.+++.+      |+|.|.
T Consensus        12 v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~------D~G~Y~   85 (110)
T 1ncn_A           12 ADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIK------DKGLYQ   85 (110)
T ss_dssp             EEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGG------GCEEEE
T ss_pred             EEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChH------HCEEEE
Confidence            9999999887765     4999875432120   0           011112 234579999998766      899999


Q ss_pred             EEEEcCCCce
Q psy5697         121 CRASNEAGVI  130 (145)
Q Consensus       121 C~A~N~~G~~  130 (145)
                      |.+.|..|..
T Consensus        86 C~v~~~~~~~   95 (110)
T 1ncn_A           86 CIIHHKKPTG   95 (110)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEcCCCCc
Confidence            9999998764

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.65  E-value=5.8e-08  Score=74.43  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             eecCceeEeeccccCc-ccCCceeee---EEEeccCCCCCCCEEEE-cCCC-C--CccCeEEEeeEeccCC--CEEEEEc
Q psy5697          10 LADADTYIIADRSLFP-RPLGYLVGN---IVYSSRSENEHYPFRIK-SAPG-G--NRTRGLELTRQTRYEP--SQLGWRF   79 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p-~~~~~~~~~---~~~~~~~~~~~~P~~i~-~p~~-~--~~~g~~L~C~a~G~P~--P~i~W~~   79 (145)
                      ..|+++|.|...+... ......++.   ..+........+|.+.. .|.. .  .+..+.|.|.+.|.++  |+|+|++
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  188 (279)
T 2wbj_D          109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  188 (279)
T ss_dssp             GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEE
T ss_pred             ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEE
Confidence            5788899888765211 000001111   11111111234675544 3433 1  1234899999999844  7999985


Q ss_pred             cCCeEeecccCce---E--E--eeCCc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          80 SNNTVIAYVKDLR---I--A--LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        80 ~dg~~i~~~~~~~---~--~--~~~Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                       ||+++.......   .  +  ..+|+      |.|.+....     .+.|.|+|.|+|....
T Consensus       189 -~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~-----d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          189 -NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQ-----NPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             -TTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTT-----CTTCEEEEEEEECCBC
T ss_pred             -CCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhc-----cCCCEEEEEEEeCCCC
Confidence             888775321000   0  0  13444      555443221     1467899999998664

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.65  E-value=6.7e-08  Score=71.11  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=43.1

Q ss_pred             eEEEeeEeccC--CCEEEEEccC-CeE---ee---------------cccCceEEee-----CCcEEEcCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE--PSQLGWRFSN-NTV---IA---------------YVKDLRIALS-----NGSLMFPPFPETGFRPDV  114 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~d-g~~---i~---------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~  114 (145)
                      +.|.|.+.|.|  .+.|.|++.+ |..   +.               ..++......     +++|.|.++..+      
T Consensus        18 v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------   91 (222)
T 1q9r_B           18 LRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAE------   91 (222)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG------
T ss_pred             EEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcc------
Confidence            99999999987  7899998743 321   10               0111222222     238999988765      


Q ss_pred             CCeEEEEEEEcCCC
Q psy5697         115 HSTVYRCRASNEAG  128 (145)
Q Consensus       115 d~G~Y~C~A~N~~G  128 (145)
                      |+|.|.|.|.|..|
T Consensus        92 D~G~Y~C~~~~~~~  105 (222)
T 1q9r_B           92 DSATYYCARDHDGY  105 (222)
T ss_dssp             GCEEEEEEECCCSS
T ss_pred             cCeEEEEEEeccCC
Confidence            89999999999875

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.65  E-value=3e-08  Score=72.61  Aligned_cols=63  Identities=11%  Similarity=0.040  Sum_probs=41.4

Q ss_pred             CeEEEeeE-eccC-CCEEEEEccC-CeEee-----------cccCceEEe-eC--CcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQ-TRYE-PSQLGWRFSN-NTVIA-----------YVKDLRIAL-SN--GSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a-~G~P-~P~i~W~~~d-g~~i~-----------~~~~~~~~~-~~--GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .+.|.|.+ .+.| .|.|+|++.+ |..+.           ..+...... .+  .+|.|.++..+      |+|.|+|.
T Consensus        17 ~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~   90 (216)
T 2xzc_L           17 KVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG------DEADYYCG   90 (216)
T ss_dssp             CEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG------GCEEEEEE
T ss_pred             eEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc------cCEEEEEE
Confidence            39999995 5543 6899998743 32211           011112222 22  27999988765      89999999


Q ss_pred             EEcCCC
Q psy5697         123 ASNEAG  128 (145)
Q Consensus       123 A~N~~G  128 (145)
                      |.|..|
T Consensus        91 ~~~~~~   96 (216)
T 2xzc_L           91 TWDSSL   96 (216)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            999987

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.65  E-value=9e-08  Score=70.32  Aligned_cols=64  Identities=14%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE---ee-c--------------ccCceEEe---eCC--cEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV---IA-Y--------------VKDLRIAL---SNG--SLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~-~--------------~~~~~~~~---~~G--sL~i~~~~~~~~~~~  113 (145)
                      .+.|.|.+.|.|  .+.|.|++.+ |..   +. .              ..+.....   ..+  +|.|.++..+     
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~-----   91 (220)
T 1pz5_B           17 SMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAE-----   91 (220)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG-----
T ss_pred             eEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHH-----
Confidence            399999999987  7999998743 321   10 0              01222222   123  8999988765     


Q ss_pred             CCCeEEEEEEEcCCCc
Q psy5697         114 VHSTVYRCRASNEAGV  129 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~G~  129 (145)
                       |+|.|+|.+.|..|.
T Consensus        92 -D~G~Y~C~~~~~~~~  106 (220)
T 1pz5_B           92 -DTGIYYCTRGGAVGA  106 (220)
T ss_dssp             -GCEEEEEEEECTTSS
T ss_pred             -HCEEEEEEEecCCcc
Confidence             899999999998654

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.4e-07  Score=65.36  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             CeEEEeeEecc-CCCEEEEEccCCe---Eeeccc-----CceEE-------eeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSNNT---VIAYVK-----DLRIA-------LSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~dg~---~i~~~~-----~~~~~-------~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .++|.|.+.+. |.+.|.|++.++.   .+....     +....       ..+.+|.|.+++.+      |+|.|.|.+
T Consensus        25 ~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~   98 (136)
T 2d9c_A           25 SATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA------DAGTYYCVK   98 (136)
T ss_dssp             CEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT------TCEEEEEEE
T ss_pred             CEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH------HCEEEEEEE
Confidence            39999999887 6789999986542   122111     11000       01358999988766      899999999


Q ss_pred             EcCCC----ce---EEEEEEEEeccCCC
Q psy5697         124 SNEAG----VI---LSRFVHVKADSRIP  144 (145)
Q Consensus       124 ~N~~G----~~---~s~~v~v~~~~~~p  144 (145)
                      .|..+    ..   ....+.|......|
T Consensus        99 ~~~~~~~~~~~~~g~~t~L~V~~~~s~P  126 (136)
T 2d9c_A           99 FRKGSPDDVEFKSGAGTELSVRAKPSAP  126 (136)
T ss_dssp             EECCSSSCEEEEECCCEEEEEECCCCCC
T ss_pred             EeCCCCcccceeeCCCeEEEEEeCCCCC
Confidence            98654    11   23567777655555

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.65  E-value=1.6e-07  Score=70.63  Aligned_cols=76  Identities=8%  Similarity=0.040  Sum_probs=47.6

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEecc--CCCEEEEEccC-CeE---ee------------cccCceEEeeC---C--
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRY--EPSQLGWRFSN-NTV---IA------------YVKDLRIALSN---G--   98 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~--P~P~i~W~~~d-g~~---i~------------~~~~~~~~~~~---G--   98 (145)
                      .+++.+.+|+. .+..  .++|.|.+.|.  |.+.|.|++.+ +..   +.            ..++......+   +  
T Consensus         7 ~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   86 (257)
T 3gkz_A            7 DKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQV   86 (257)
T ss_dssp             --CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEE
T ss_pred             CccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceE
Confidence            34566666665 2233  39999999995  48999998743 211   10            01111122211   2  


Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +|.|.++..+      |+|.|+|.|.|.
T Consensus        87 ~L~I~~v~~~------DsG~Y~C~~~n~  108 (257)
T 3gkz_A           87 YLQLKSVSSE------DTATYYCSYFDS  108 (257)
T ss_dssp             EEEECSCCGG------GCEEEEEEEECT
T ss_pred             EEEECCCChh------hCEEEEEEEecC
Confidence            6999988765      899999999997

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.64  E-value=8.4e-08  Score=68.22  Aligned_cols=65  Identities=11%  Similarity=0.001  Sum_probs=43.4

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.+.|.|.|  .++|+ +||..+......   ..+..|.|.  .      ..|+|.|+|.|.|...  .+..+.|.
T Consensus        16 v~l~C~~~~~~~p~~~~~W~-k~~~~l~~~~~~---~~~~~l~i~--~------~~d~G~Y~C~~~n~~~--~~~~l~V~   81 (184)
T 3b5h_A           16 ILLTCSLNDSATEVTGHRWL-KGGVVLKEDALP---GQKTEFKVD--S------DDQWGEYSCVFLPEPM--GTANIQLH   81 (184)
T ss_dssp             EEEEEEEESCSSCCCEEEEE-SSSEEEECTTCC---CSEEEEEEC--G------GGCCEEEEEEEESTTS--CEEEEEEC
T ss_pred             EEEEEECCCCCCCceEEEEE-eCCEEeeccccc---CCcEEEEEe--c------hhhCeEEEEEEECCcC--cEEEEEEe
Confidence            8999999999998  99998 488887643211   112245543  2      2289999999999433  34455554


Q ss_pred             e
Q psy5697         139 A  139 (145)
Q Consensus       139 ~  139 (145)
                      .
T Consensus        82 ~   82 (184)
T 3b5h_A           82 G   82 (184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.64  E-value=9.7e-08  Score=71.95  Aligned_cols=61  Identities=15%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEeeC-----CcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALSN-----GSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .+.|.|++.+ +..+.                ..++......+     .+|.|.++..+      |
T Consensus        19 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~------D   92 (256)
T 3umt_A           19 SVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE------D   92 (256)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------G
T ss_pred             CEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc------c
Confidence            399999999987  7999998632 32211                01111222221     24999988765      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +|.|.|.|.|.
T Consensus        93 sG~Y~C~~~~~  103 (256)
T 3umt_A           93 SAVYYCARDDR  103 (256)
T ss_dssp             CEEEEEEECCS
T ss_pred             CEEEEEEEccC
Confidence            99999999998

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.63  E-value=7.9e-08  Score=72.30  Aligned_cols=80  Identities=13%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             CCCCCEEEEcCCC-CCccC--eEEEeeEec-cCCC-EEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCC
Q psy5697          43 NEHYPFRIKSAPG-GNRTR--GLELTRQTR-YEPS-QLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFR  111 (145)
Q Consensus        43 ~~~~P~~i~~p~~-~~~~g--~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~  111 (145)
                      ...+|.+...++. ....|  +.|.|.+.| .|+| .++|+ ++|..+...........+|      +|.|.+...    
T Consensus       137 ~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~-~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~----  211 (239)
T 3tv3_H          137 STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL----  211 (239)
T ss_dssp             CCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEG-GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGT----
T ss_pred             CCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEE-ECCccCceEecCceECCCCCEEEEEEEEEchhhc----
Confidence            3456766644443 22223  899999998 5545 48896 4665332111111222234      466655432    


Q ss_pred             CCCCCeEEEEEEEcCCCce
Q psy5697         112 PDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~  130 (145)
                        .| |.|.|.|+|..+..
T Consensus       212 --~~-~~ytC~v~h~~~~~  227 (239)
T 3tv3_H          212 --GT-QTYICNVNHKPSNT  227 (239)
T ss_dssp             --TT-CCCEEEEEEGGGTE
T ss_pred             --CC-CEEEEEEEECCCCc
Confidence              26 99999999998765

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.63  E-value=4.7e-08  Score=67.26  Aligned_cols=62  Identities=11%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             CeEEEeeEecc-CCCEEEEEccCCe---Eeeccc-----CceE----E---eeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSNNT---VIAYVK-----DLRI----A---LSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~dg~---~i~~~~-----~~~~----~---~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .++|.|.+.|. |.+.|.|++.++.   .+....     +...    .   ..+.+|.|.++..+      |+|.|.|.+
T Consensus        20 ~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~   93 (127)
T 2jju_A           20 SATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA------DAGTYYCVK   93 (127)
T ss_dssp             CEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGG------GCEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHH------HCEEEEEEE
Confidence            39999999887 7789999975532   122111     1111    0   12458999988765      899999999


Q ss_pred             EcCC
Q psy5697         124 SNEA  127 (145)
Q Consensus       124 ~N~~  127 (145)
                      .|.-
T Consensus        94 ~~~~   97 (127)
T 2jju_A           94 FRKG   97 (127)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            9863

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.62  E-value=3.8e-08  Score=73.24  Aligned_cols=63  Identities=8%  Similarity=0.040  Sum_probs=43.9

Q ss_pred             CeEEEeeEeccCC----CEEEEEccC-CeEe---ec------------ccCceEEee-----CCcEEEcCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEP----SQLGWRFSN-NTVI---AY------------VKDLRIALS-----NGSLMFPPFPETGFRPDV  114 (145)
Q Consensus        60 g~~L~C~a~G~P~----P~i~W~~~d-g~~i---~~------------~~~~~~~~~-----~GsL~i~~~~~~~~~~~~  114 (145)
                      .++|.|.+.|.|.    +.|.|++.+ |..+   ..            .++......     +++|.|.++..+      
T Consensus        17 ~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------   90 (228)
T 3bae_H           17 TLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTA------   90 (228)
T ss_dssp             CEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGG------
T ss_pred             eEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcc------
Confidence            3999999999986    999998643 3221   10            111222221     248999988765      


Q ss_pred             CCeEEEEEEEcCCC
Q psy5697         115 HSTVYRCRASNEAG  128 (145)
Q Consensus       115 d~G~Y~C~A~N~~G  128 (145)
                      |+|.|.|.+.|..|
T Consensus        91 D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           91 DTATYYCARRGFYG  104 (228)
T ss_dssp             GCEEEEEEEEEEST
T ss_pred             cCEEEEEEEecCCC
Confidence            89999999999876

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.62  E-value=1.9e-07  Score=69.87  Aligned_cols=115  Identities=11%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEEE-EcCCC-CC--ccCeEEEeeEecc-CCC-EEEEEcc
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFRI-KSAPG-GN--RTRGLELTRQTRY-EPS-QLGWRFS   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~i-~~p~~-~~--~~g~~L~C~a~G~-P~P-~i~W~~~   80 (145)
                      ..|+++|.|.............++.   ..+........+|.+. ..|.. ..  +..+.|.|.+.|. |+| +|+|++ 
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-  159 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV-  159 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE-
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE-
Confidence            6788899998765421000001111   1111111123467554 44543 22  2348999999996 755 999975 


Q ss_pred             CCeEeecccC---ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          81 NNTVIAYVKD---LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        81 dg~~i~~~~~---~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ||..+.....   ......+|++.+..   +...+  ...+.|.|+|.|+|..
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~--~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATF--WHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHH--HTCTTCEEEEEEEECC
T ss_pred             CCEECCCceecccceEeCCCCCEEEEEEEEEcHHH--hccCCCeEEEEEEcCC
Confidence            8888753211   11223566654422   22110  0113678999999984

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.62  E-value=1.2e-07  Score=63.73  Aligned_cols=73  Identities=14%  Similarity=0.259  Sum_probs=43.7

Q ss_pred             CeEEEeeEec----cCCCEEEEEccCC--e-E--ee-c------------ccCceEEe-----eCCcEEEcCCCCCCCCC
Q psy5697          60 RGLELTRQTR----YEPSQLGWRFSNN--T-V--IA-Y------------VKDLRIAL-----SNGSLMFPPFPETGFRP  112 (145)
Q Consensus        60 g~~L~C~a~G----~P~P~i~W~~~dg--~-~--i~-~------------~~~~~~~~-----~~GsL~i~~~~~~~~~~  112 (145)
                      .+.|.|...+    .+.+.|.|++.+.  . .  +. .            .++.....     .+++|.|.+++.+    
T Consensus        16 ~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~----   91 (124)
T 1neu_A           16 QVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYS----   91 (124)
T ss_dssp             CEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGG----
T ss_pred             eEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChh----
Confidence            3999999864    3578999986432  1 1  11 0            01111221     2468999988766    


Q ss_pred             CCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         113 DVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       113 ~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                        |+|.|.|.+.|..|.. .+..++|.
T Consensus        92 --D~G~Y~C~v~~~~~~~~~~~~v~L~  116 (124)
T 1neu_A           92 --DNGTFTCDVKNPPDIVGKTSQVTLY  116 (124)
T ss_dssp             --GCEEEEEEEEC----CCEEEEEEEE
T ss_pred             --hCEEEEEEEEcCCCCcCcEeeEEEE
Confidence              8999999999998763 34444444

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.62  E-value=1.3e-07  Score=71.09  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             CeEEEeeEecc-CC-CEEEEEccCCe-EeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRY-EP-SQLGWRFSNNT-VIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~-P~-P~i~W~~~dg~-~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|. |. |+|+|++ ||. .+...........+|      +|.|.+..       .+ |.|+|.|.|..|..
T Consensus       149 ~v~L~C~~~g~~P~~~~v~W~~-~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~-------~~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          149 AGTYLCLLEKFFPDVIKIHWEE-KKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKS-------LD-KEHRCIVRHENNKN  219 (242)
T ss_dssp             CEEEEEEEEEESSCCEEEEEEE-SSSCCCCCCEECCCEECSSSEEEEEEEEECTGG-------GG-SCEEEEEEETTSGG
T ss_pred             CceEEEEEeeEECCCeEEEEEc-CCCEeecCccccceecCCCcEEEEEEEEEcccc-------CC-CEEEEEEEeCCCCC
Confidence            38999999997 64 7999985 554 443211000111333      56665331       13 99999999999976


Q ss_pred             -EEEEEEE
Q psy5697         131 -LSRFVHV  137 (145)
Q Consensus       131 -~s~~v~v  137 (145)
                       .+..+.+
T Consensus       220 ~~~~~~~~  227 (242)
T 1hxm_B          220 GVDQEIIF  227 (242)
T ss_dssp             GSCEEEEE
T ss_pred             CceeEeec
Confidence             5666655

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.61  E-value=2.7e-07  Score=63.65  Aligned_cols=72  Identities=14%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             CeEEEeeEeccCCC---EEEEEccCCe----------Eeec-----ccCceEEee------CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEPS---QLGWRFSNNT----------VIAY-----VKDLRIALS------NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P~P---~i~W~~~dg~----------~i~~-----~~~~~~~~~------~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|..+..+.+   .|.|+|.+..          ....     ..+......      +.+|.|.+++.+      |
T Consensus        22 ~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~------D   95 (125)
T 4gos_A           22 DGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLT------D   95 (125)
T ss_dssp             CEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGG------G
T ss_pred             CEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChH------H
Confidence            39999998755443   6999874321          1110     111112221      238999998766      8


Q ss_pred             CeEEEEEEEcCCCceEEEEEEEE
Q psy5697         116 STVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +|.|+|.+.|..|.. ...+.|+
T Consensus        96 ~G~Y~C~v~~~~g~~-~~~v~Lk  117 (125)
T 4gos_A           96 AGTYKCYIITSKGKG-NANLEYK  117 (125)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEE
T ss_pred             CEEEEEEEEeCCCeE-EEEEEEE
Confidence            999999999999886 3445444

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.61  E-value=1.3e-07  Score=71.18  Aligned_cols=76  Identities=11%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             CCCEEEEcCCC-CCcc--CeEEEeeEecc--CCCEEEEEccC-CeEee----c------------ccCceEEee---CC-
Q psy5697          45 HYPFRIKSAPG-GNRT--RGLELTRQTRY--EPSQLGWRFSN-NTVIA----Y------------VKDLRIALS---NG-   98 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~~--g~~L~C~a~G~--P~P~i~W~~~d-g~~i~----~------------~~~~~~~~~---~G-   98 (145)
                      .+|.+...+.. ++..  .++|.|.+.|.  |.|.|.|++.+ +..+.    .            .++......   .+ 
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            45677777776 2333  39999999994  78999998632 22110    0            011122221   12 


Q ss_pred             -cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          99 -SLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        99 -sL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                       +|.|.++..+      |+|.|.|.|.|.
T Consensus        85 ~~L~I~~v~~~------DsG~Y~C~~~~~  107 (256)
T 3juy_B           85 AYMELRSLRSA------DTAVYYCARVGE  107 (256)
T ss_dssp             EEEEECSCCGG------GCEEEEEEECCC
T ss_pred             EEEEECCCCcc------cCEEEEEeEEec
Confidence             5999988765      899999999997

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.61  E-value=1.6e-07  Score=63.05  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             eEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.+.+.+.+.+.|++.+ |.   .+..        .++.... ..++  +|.|.++..+      |+|.|.|.+.|
T Consensus        22 v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~~~   95 (111)
T 1i3g_L           22 VSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSE------DLADYFCQQYS   95 (111)
T ss_dssp             EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEECS
T ss_pred             EEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHH------HCEEEEEEEec
Confidence            999999999999999998754 22   1210        1111111 2223  7999988765      89999999998


Q ss_pred             CC
Q psy5697         126 EA  127 (145)
Q Consensus       126 ~~  127 (145)
                      ..
T Consensus        96 ~~   97 (111)
T 1i3g_L           96 SY   97 (111)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.61  E-value=2.7e-08  Score=86.78  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc-----e-EEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV-----I-LSRF  134 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~-----~-~s~~  134 (145)
                      +.|+|.+.| |.|+|+|++ +|.++......+....++.|.|..+..+      |+|.|+|.|+|..|.     . ....
T Consensus       551 ~~L~C~~~s-p~a~v~W~~-~~~~l~~~~~~~~~~~~~~LlI~~v~~~------DsG~Y~C~A~e~~~~~~~~~~~~~~~  622 (663)
T 1olz_A          551 AELKCSQKS-NLARVFWKF-QNGVLKAESPKYGLMGRKNLLIFNLSEG------DSGVYQCLSEERVKNKTVFQVVAKHV  622 (663)
T ss_dssp             EEECCCCSC-TTCEEEEEE-SSSBCCCCSSSBCCTTTTCEEECSCCGG------GCEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             EEEEccCCC-CCCcEEEEE-CCeeccccCcceEEecCCeEEEEecCcc------cCeEEEEEEEECccCCCceEEEEEEE
Confidence            899999999 999999985 6666653332333345789999887654      899999999999522     2 3335


Q ss_pred             EEEEeccCC
Q psy5697         135 VHVKADSRI  143 (145)
Q Consensus       135 v~v~~~~~~  143 (145)
                      +.|..++++
T Consensus       623 l~V~v~P~~  631 (663)
T 1olz_A          623 LEVKVVPKP  631 (663)
T ss_dssp             EEEEC----
T ss_pred             EEEEeCCcc
Confidence            566655554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.60  E-value=7e-08  Score=71.19  Aligned_cols=62  Identities=16%  Similarity=0.056  Sum_probs=42.4

Q ss_pred             eEEEeeEeccCC-C-EEEEEccC-CeEe---e--------cccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEP-S-QLGWRFSN-NTVI---A--------YVKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~-P-~i~W~~~d-g~~i---~--------~~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|.+.|.|+ + .|+|++.+ |..+   .        ..+..... ..+  ++|.|.++..+      |+|.|+|.|
T Consensus        37 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~  110 (234)
T 2j6e_L           37 VTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSE------DEADYYCAT  110 (234)
T ss_dssp             EEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCST------TCSEEEEEE
T ss_pred             EEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHH------HCEEEEEEE
Confidence            899999999764 5 79998743 3221   0        01111122 122  38999988765      899999999


Q ss_pred             EcCCC
Q psy5697         124 SNEAG  128 (145)
Q Consensus       124 ~N~~G  128 (145)
                      .|..|
T Consensus       111 ~~~~~  115 (234)
T 2j6e_L          111 WDDSL  115 (234)
T ss_dssp             EETTT
T ss_pred             EcCCc
Confidence            99988

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.59  E-value=2.7e-07  Score=68.08  Aligned_cols=110  Identities=12%  Similarity=0.081  Sum_probs=62.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEE-EcCCC-CCccC--eEEEeeEecc-CC-CEEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRI-KSAPG-GNRTR--GLELTRQTRY-EP-SQLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i-~~p~~-~~~~g--~~L~C~a~G~-P~-P~i~W~~~dg~   83 (145)
                      ..|.+.|.|......-..  ..... + .. .....+|.+. ..+.. ....|  +.|.|.|.|. |+ ++|+|+ +||.
T Consensus        75 ~~D~g~Y~C~~~~~~~~~--~~~~~-i-~~-~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~-k~g~  148 (214)
T 1ow0_A           75 WNHGKTFTCTAAYPESKT--PLTAT-L-SK-SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWL-QGSQ  148 (214)
T ss_dssp             HHHTCEEEEEECCSSCSS--CEEEE-E-EC-CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEE-ETTE
T ss_pred             cCCCCeEEEEEecCCCCC--ceeEe-e-cc-CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEE-ECCE
Confidence            357889999876532111  11111 1 11 2345677654 44433 22233  8999999996 53 499997 5888


Q ss_pred             EeecccCc---eEEe---eCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          84 VIAYVKDL---RIAL---SNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        84 ~i~~~~~~---~~~~---~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .+......   ....   .+|++.+..   +...+   ..+.|.|+|.|+|..-
T Consensus       149 ~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~---~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          149 ELPREKYLTWASRQEPSQGTTTFAVTSILRVAAED---WKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             ECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHH---HHHTCCEEEEEECTTC
T ss_pred             ECCCCceeecCCcccccCCCCcEEEEEEEEECHHH---ccCCCEEEEEEECCCC
Confidence            87643111   1334   567666542   22210   0137899999999864

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.59  E-value=1.8e-07  Score=69.19  Aligned_cols=64  Identities=8%  Similarity=0.043  Sum_probs=43.8

Q ss_pred             CeEEEeeEecc-CC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ++.|.|.+.|. |. |+|+|++ | ..+...........+|++.+.+...     ..|.|.|.|.|+|..+.+
T Consensus       134 ~~~l~C~~~g~~P~~~~v~W~~-~-~~l~~~~~~~~~~~~g~y~~~~~~~-----~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          134 GTNVACLVKDFYPKEVTISLRS-S-KKIVEFDPAIVISPSGKYSAVKLGQ-----YGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             TTEEEEEEEEESSSCCEEEEEC-S-SEEEECCCEEEECTTSSEEEEECEE-----ESSTTTCEEEEEETTEEE
T ss_pred             CCeEEEEEeeEeCCCeEEEEec-C-CcccCCccceEEcCCCcEEEEEeec-----ccCCCcEEEEEEECCccE
Confidence            37999999986 44 7999975 5 5665432222335678777754321     126899999999998865

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.59  E-value=2.7e-08  Score=72.74  Aligned_cols=62  Identities=15%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             CeEEEeeEeccCC-----CEEEEEccCCeE-ee----------cccCceEEee------CCcEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELTRQTRYEP-----SQLGWRFSNNTV-IA----------YVKDLRIALS------NGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C~a~G~P~-----P~i~W~~~dg~~-i~----------~~~~~~~~~~------~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .+.|.|.+.|.|.     +.|+|++.+... +.          ...+......      +++|.|.++..+      |+|
T Consensus        12 ~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~------D~G   85 (222)
T 4i0k_A           12 DATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT------DEG   85 (222)
T ss_dssp             CEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG------GCS
T ss_pred             CeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc------cCE
Confidence            3999999999876     899998754322 11          1111122222      568999988765      899


Q ss_pred             EEEEEEEcCC
Q psy5697         118 VYRCRASNEA  127 (145)
Q Consensus       118 ~Y~C~A~N~~  127 (145)
                      .|+|.+.|..
T Consensus        86 ~Y~C~~~~~~   95 (222)
T 4i0k_A           86 SYTCFVSIQD   95 (222)
T ss_dssp             CEEEEEEECC
T ss_pred             EEEEEEEeCC
Confidence            9999999863

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.59  E-value=1.5e-07  Score=64.52  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeec------------ccCceEEe-eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAY------------VKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~------------~~~~~~~~-~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.. ...+.+.|.|++.+...+..            ..+..... .+|+|.|.+++.+      |+|.|.|...|.
T Consensus        22 VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~------DsG~Y~c~v~~~   95 (121)
T 2edo_A           22 VTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKE------DNSTYIMRVLKK   95 (121)
T ss_dssp             EEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGG------GCSEEEEEEEET
T ss_pred             EEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHH------HCeEEEEEEEcC
Confidence            9999987 45567899999754322211            11112333 6789999998766      899999999988


Q ss_pred             CCceEEE--EEEEEeccCCC
Q psy5697         127 AGVILSR--FVHVKADSRIP  144 (145)
Q Consensus       127 ~G~~~s~--~v~v~~~~~~p  144 (145)
                      .+.....  .++|.+...-|
T Consensus        96 ~~~~~~~~~~L~V~~~~~~P  115 (121)
T 2edo_A           96 TGNEQEWKIKLQVLDPVPKP  115 (121)
T ss_dssp             TTEEEECCEECEEECCSCCC
T ss_pred             CCcEEEEEEEEEEECCCCCC
Confidence            7654444  44444443333

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.59  E-value=3.1e-07  Score=60.23  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=45.8

Q ss_pred             CeEEEeeEeccCCC---EEEEEccCC--------------eEeec-ccCceEEe-----eCCcEEEcCCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYEPS---QLGWRFSNN--------------TVIAY-VKDLRIAL-----SNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        60 g~~L~C~a~G~P~P---~i~W~~~dg--------------~~i~~-~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      .+.|.|...+.+.+   .|.|++.+.              ..+.. ..+.....     .+.+|.|.+++.+      |+
T Consensus        11 ~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------D~   84 (109)
T 2oyp_A           11 NAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD------DH   84 (109)
T ss_dssp             CEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG------GC
T ss_pred             CEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh------hC
Confidence            39999999887644   499987431              11110 11111221     1258999988766      89


Q ss_pred             eEEEEEEEcCCCce-EEEEEEEE
Q psy5697         117 TVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |.|.|.+.|..|.. .+..+.|.
T Consensus        85 G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           85 GTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             EEEEEEECCSSTTCCEEEEEEEE
T ss_pred             eEEEEEEEcCCcccceEEEEEEE
Confidence            99999999987654 33444443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.59  E-value=8.7e-08  Score=70.71  Aligned_cols=53  Identities=13%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.+   |.|+|+|+ +||..+...     ...+++|.|.++..+      |+|.|+|.|.|...
T Consensus        21 v~L~C~~---p~~~i~W~-k~g~~l~~~-----~~~~~~L~i~~v~~~------DsG~Y~C~~~~~~s   73 (204)
T 1sy6_A           21 VLLTCDA---EAKNITWF-KDGKMIGFL-----TEDKKKWNLGSNAKD------PRGMYQCKGSQNKS   73 (204)
T ss_dssp             EEEEECS---CSSEEEEE-ETTEEEEEE-----ESSCCCEEEEEGGGC------CEEEEEEESSSSCC
T ss_pred             EEEEEcC---CCCEEEEE-ECCEECCCC-----CCCCCeEEeCCCCcC------CCEEEEEEecCCCC
Confidence            8999998   89999998 488877532     124678999988765      89999999877543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.58  E-value=2.2e-07  Score=68.79  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE---ee-c------------ccCceEEee---C--CcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV---IA-Y------------VKDLRIALS---N--GSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~-~------------~~~~~~~~~---~--GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .+.|.|++.+ |..   +. .            .++......   .  .+|.|.++..+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   90 (220)
T 2fbj_H           17 SLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE------D   90 (220)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG------G
T ss_pred             cEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh------h
Confidence            399999999987  7899998743 321   11 0            112222222   2  38999988765      8


Q ss_pred             CeEEEEEEEcCCCc
Q psy5697         116 STVYRCRASNEAGV  129 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~  129 (145)
                      +|.|.|.+.|..+.
T Consensus        91 sG~Y~C~~~~~~~~  104 (220)
T 2fbj_H           91 TALYYCARLHYYGY  104 (220)
T ss_dssp             CEEEEEEEEETTTE
T ss_pred             CEEEEEEEeccccc
Confidence            99999999998653

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.58  E-value=3.2e-07  Score=68.29  Aligned_cols=60  Identities=18%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-------------CCeEeecc--c-CceEEee----CCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-------------NNTVIAYV--K-DLRIALS----NGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-------------dg~~i~~~--~-~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.| +.|.|.+.|.|++.             ++......  + +......    +.+|.|.+++.+      |+|.|
T Consensus        19 ~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~------D~G~Y   91 (245)
T 4ei6_B           19 MVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE------DSAVY   91 (245)
T ss_dssp             CEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG------GCEEE
T ss_pred             CEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh------HCEEE
Confidence            399999 88999999999862             12111111  0 1222222    227999988765      89999


Q ss_pred             EEEEEcC
Q psy5697         120 RCRASNE  126 (145)
Q Consensus       120 ~C~A~N~  126 (145)
                      .|.|.|.
T Consensus        92 ~C~~~~~   98 (245)
T 4ei6_B           92 FCASSFW   98 (245)
T ss_dssp             EEEEECS
T ss_pred             EEEEccC
Confidence            9999964

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.58  E-value=3.9e-07  Score=62.21  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             eEEEeeEeccCC---CEEEEEccCC-e---Eee------------cccCceEEe------eCCcEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP---SQLGWRFSNN-T---VIA------------YVKDLRIAL------SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~---P~i~W~~~dg-~---~i~------------~~~~~~~~~------~~GsL~i~~~~~~~~~~~~d  115 (145)
                      ++|.|...+.+.   +.|.|+|.+. .   .+.            ..++.....      .+.+|.|.+++.+      |
T Consensus        18 v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~------D   91 (123)
T 4gjt_B           18 AKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQA------D   91 (123)
T ss_dssp             EEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSS------S
T ss_pred             EEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChH------H
Confidence            999999988765   4689987431 1   110            001111111      1347999998776      8


Q ss_pred             CeEEEEEEEc-CCCceEEEEEEEEe
Q psy5697         116 STVYRCRASN-EAGVILSRFVHVKA  139 (145)
Q Consensus       116 ~G~Y~C~A~N-~~G~~~s~~v~v~~  139 (145)
                      +|.|.|.+.+ ..|.. +..+.|..
T Consensus        92 sG~Y~C~v~t~~~g~~-~~~~~L~V  115 (123)
T 4gjt_B           92 EGEYECRVSTFPAGSF-QARLRLRV  115 (123)
T ss_dssp             CSEEEEEEEESSSCEE-EEEEEEEC
T ss_pred             CEEEEEEEEECCCCeE-EeEEEEEE
Confidence            9999998776 46654 34444443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.57  E-value=1.1e-07  Score=71.84  Aligned_cols=117  Identities=12%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             eeceee-eecCceeEeeccccCc-ccCCceeeeE---EEeccCCCCCCCEEEEcCCC-C-Cc--cCeEEEeeEec-cCCC
Q psy5697           4 FHISTL-LADADTYIIADRSLFP-RPLGYLVGNI---VYSSRSENEHYPFRIKSAPG-G-NR--TRGLELTRQTR-YEPS   73 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p-~~~~~~~~~~---~~~~~~~~~~~P~~i~~p~~-~-~~--~g~~L~C~a~G-~P~P   73 (145)
                      ++|+.+ ..|+++|.|....... ......++..   .+........+|.+...++. . ..  ..+.|.|.+.| .|+|
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  155 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc
Confidence            455555 7899999998753211 0000112111   11112223356755544332 1 11  23899999999 7777


Q ss_pred             -EEEEEccCCeEeecccCce--EE-----eeCCc------EEEcCCCCCCCCCCCC-CeEEEEEEEcCC
Q psy5697          74 -QLGWRFSNNTVIAYVKDLR--IA-----LSNGS------LMFPPFPETGFRPDVH-STVYRCRASNEA  127 (145)
Q Consensus        74 -~i~W~~~dg~~i~~~~~~~--~~-----~~~Gs------L~i~~~~~~~~~~~~d-~G~Y~C~A~N~~  127 (145)
                       +|+|++ ||+.+.......  ..     ..+|+      |.|.+....      | .|.|+|.|+|..
T Consensus       156 i~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~------d~~~~ytC~v~h~~  217 (253)
T 3to4_D          156 VELSWWV-NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQ------NPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEE-TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHT------CTTCEEEEEEEECC
T ss_pred             EEEEEEE-CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhc------cCCCEEEEEEEeCC
Confidence             899975 888875321000  00     03453      444332111      3 679999999984

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.57  E-value=1.3e-07  Score=65.04  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=47.3

Q ss_pred             CeEEEeeEeccC----CCEEEEEccC-CeE---eec--------cc-CceEEeeCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYE----PSQLGWRFSN-NTV---IAY--------VK-DLRIALSNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P----~P~i~W~~~d-g~~---i~~--------~~-~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.+.+    .+.|.|++.+ +..   +-.        .+ +.......+  +|.|.+++.+      |+|.|.
T Consensus        18 ~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~------DsG~Y~   91 (126)
T 4ffy_L           18 RATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETD------DAATYY   91 (126)
T ss_dssp             CEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHH------HCEEEE
Confidence            399999999988    6889999743 211   110        01 111112223  7999988765      899999


Q ss_pred             EEEEcCCCceE--EEEEEEE
Q psy5697         121 CRASNEAGVIL--SRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~~--s~~v~v~  138 (145)
                      |.+.|......  ...+.|.
T Consensus        92 C~~~~~~~~~fg~gT~L~V~  111 (126)
T 4ffy_L           92 CQQNNEDPYTFGGGTKLEIK  111 (126)
T ss_dssp             EEECSSSSCEECCCEEEEEE
T ss_pred             EEEecCCCcEECCCEEEEEe
Confidence            99999765443  3455555

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.57  E-value=2.1e-07  Score=69.75  Aligned_cols=108  Identities=9%  Similarity=0.038  Sum_probs=58.4

Q ss_pred             ecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEE-EcCCCCC-ccC-eEEEeeEecc-C-CCEEEEEccCCeEe
Q psy5697          11 ADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRI-KSAPGGN-RTR-GLELTRQTRY-E-PSQLGWRFSNNTVI   85 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i-~~p~~~~-~~g-~~L~C~a~G~-P-~P~i~W~~~dg~~i   85 (145)
                      .|.+.|.|......-.  ..+... + ........+|.+. ..|.... ..+ +.|.|.|.|. | .++|+|+ +||+.+
T Consensus        87 ~D~g~Y~C~~~~~~~~--~~~~~~-v-~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~-k~g~~l  161 (231)
T 2w59_A           87 LSGERFTCTVQHEELP--LPLSKS-V-YRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWL-RDHRAV  161 (231)
T ss_dssp             HTTCCEEEEEECTTCS--SCEEEE-E-CCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE-ETTEEC
T ss_pred             cCCCEEEEEEEcCCCC--CceEEE-E-ecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEE-ECCEEC
Confidence            4667787776543211  112211 1 1111123567544 4444311 123 8999999996 4 3799997 588887


Q ss_pred             ecccCce---EEe--------eC-Cc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          86 AYVKDLR---IAL--------SN-GS------LMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        86 ~~~~~~~---~~~--------~~-Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .......   ...        .+ |+      |.|.+...      .|.|.|+|.|+|....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~------~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          162 PATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKW------NGGTVFACMAVHEALP  217 (231)
T ss_dssp             CGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHH------HTTCCEEEEEECTTST
T ss_pred             CCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHc------CCCCcEEEEEEcCCCC
Confidence            6432111   111        34 54      44543221      2589999999999765

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.57  E-value=1.2e-07  Score=63.52  Aligned_cols=61  Identities=20%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             CeEEEeeEeccC----CCEEEEEccC-Ce-E--eec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYE----PSQLGWRFSN-NT-V--IAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P----~P~i~W~~~d-g~-~--i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.+.+    .+.+.|++.+ |. +  +..        .++.... ..++  +|.|.++..+      |+|.|.
T Consensus        18 ~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y~   91 (111)
T 1j05_L           18 RATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD------DVATYY   91 (111)
T ss_dssp             CEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcc------cCEEEE
Confidence            399999999988    6889998753 32 1  110        0111121 2223  7999988765      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+.|.
T Consensus        92 C~~~~~   97 (111)
T 1j05_L           92 CQQTNE   97 (111)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            999986

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.57  E-value=3e-07  Score=69.61  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC-C--ccCeEEEeeEec-cCC-CEEEEEccCCeE
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG-N--RTRGLELTRQTR-YEP-SQLGWRFSNNTV   84 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~-~--~~g~~L~C~a~G-~P~-P~i~W~~~dg~~   84 (145)
                      ..|.+.|.|.........  ...+  ..........+|.+...++.. .  ...+.|.|.+.| +|+ .+|+|+ +||+.
T Consensus        91 ~~D~g~Y~C~~~~~~~~~--~~~~--~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~-k~g~~  165 (239)
T 1i1c_A           91 WLNGKTFKCKVNSGAFPA--PIEK--SISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWK-MNGQP  165 (239)
T ss_dssp             HHTTCCEEEEEECSSSSS--CEEE--EECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE-ETTEE
T ss_pred             ccCCCeEEEEEecccCCC--CcEE--EEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEE-ECCEE
Confidence            447778888775532221  1111  111112445678766555441 1  123899999999 455 389997 58888


Q ss_pred             eecccCc-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          85 IAYVKDL-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        85 i~~~~~~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +...... .....+|++.+..   +...+   ..|.|.|+|.|+|..-.
T Consensus       166 l~~~~~~~~~~~~dgt~~~~s~l~v~~~~---~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          166 QENYKNTPPTMDTDGSYFLYSKLNVKKET---WQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             CSSEEECCCEECTTSCEEEEEEEEEEHHH---HHTTCCEEEEEECTTSG
T ss_pred             CCCceecCceECCCCCEEEEEEEEEChhh---cCCCCEEEEEEECCCCC
Confidence            7532111 1234567655432   22110   11589999999999754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.57  E-value=1.3e-07  Score=72.37  Aligned_cols=76  Identities=14%  Similarity=0.073  Sum_probs=49.0

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE---ee---c----------ccCceEEee----CCcEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV---IA---Y----------VKDLRIALS----NGSLM  101 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~---i~---~----------~~~~~~~~~----~GsL~  101 (145)
                      .+.+++.|.. .+  +..+.|.|.+.|.|.+.|+|++.+ |..   +.   .          .++......    +.+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            3455555554 22  233999999999999999998753 221   10   0          111122221    23899


Q ss_pred             EcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697         102 FPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       102 i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      |.+++.+      |+|.|.|.|.|..
T Consensus       104 I~~v~~~------D~G~Y~C~~~~~~  123 (279)
T 2wbj_D          104 VTSAHPE------DSSFYICSARDLT  123 (279)
T ss_dssp             ESSCCGG------GCEEEEEEEEETT
T ss_pred             EccCCcc------CCEEEEEEEcccc
Confidence            9988765      8999999999953

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.57  E-value=1.6e-07  Score=69.23  Aligned_cols=63  Identities=10%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEe---e------------cccCceEEee---CC--cEEEcCCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVI---A------------YVKDLRIALS---NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i---~------------~~~~~~~~~~---~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      .+.|.|.+.|.|  .+.|.|++.+ |...   .            ..++......   .+  +|.|.++..+      |+
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D~   90 (215)
T 1c5d_H           17 TLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE------DT   90 (215)
T ss_dssp             CEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG------GC
T ss_pred             cEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc------cC
Confidence            399999999986  5899998753 3211   0            0111222221   22  8999988765      89


Q ss_pred             eEEEEEEEcCCC
Q psy5697         117 TVYRCRASNEAG  128 (145)
Q Consensus       117 G~Y~C~A~N~~G  128 (145)
                      |.|.|.+.|..|
T Consensus        91 G~Y~C~~~~~~~  102 (215)
T 1c5d_H           91 AIYFCTREDGWN  102 (215)
T ss_dssp             EEEEEEECCSSS
T ss_pred             EEEEEEEecCCc
Confidence            999999999853

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.57  E-value=1.6e-07  Score=72.09  Aligned_cols=110  Identities=13%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             eecCceeEeeccccCcccCCceeeeEEE-eccCCCCCCCEEEE-cCCCCCccC--eEEEeeEecc-CCC-EEEEEccCCe
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGNIVY-SSRSENEHYPFRIK-SAPGGNRTR--GLELTRQTRY-EPS-QLGWRFSNNT   83 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~P~~i~-~p~~~~~~g--~~L~C~a~G~-P~P-~i~W~~~dg~   83 (145)
                      ..|+++|.|.........  ..++..+. ........+|.+.. .|......|  +.|.|.+.|. |.| +|+|+ +||.
T Consensus        94 ~~DsG~Y~C~~~~~~~~~--~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~-k~g~  170 (261)
T 2xqy_G           94 SEDSAVYYCGRLGYVYGF--DYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN-SGSL  170 (261)
T ss_dssp             GGGCEEEEEEEECTTSSE--EEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG-GGTC
T ss_pred             cccCeEEEEEEecCCCcc--eEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe-cCCC
Confidence            678888888875531000  01111110 01111234565554 443322223  8999999985 877 99996 4665


Q ss_pred             Eeec--ccCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          84 VIAY--VKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        84 ~i~~--~~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+..  .+...   ......+|.|.+....      | |.|+|.|+|....
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWP------S-QSITCNVAHPASS  214 (261)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEETTTTT------T-SCCEEEEEEGGGT
T ss_pred             cCceEecCceecCCcEEEEEEEEEeccccC------C-CEEEEEEEECCCC
Confidence            5421  11100   1111236777654322      5 9999999997654

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.57  E-value=4.1e-08  Score=76.47  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=45.6

Q ss_pred             CeEEEeeEecc-----CCCEEEEEccCCeEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRY-----EPSQLGWRFSNNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~-----P~P~i~W~~~dg~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|+     |.|.|.|+ .||..+...  ......+    ++|.|.++..+      |+|.|+|.|.|..+.+
T Consensus        17 ~v~l~C~~~~~~~~~~~~~~i~W~-~~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~------d~g~y~c~~~~~~~~~   87 (313)
T 2d9q_B           17 PITASCIIKQNCSHLDPEPQILWR-LGAELQPGG--RQQRLSDGTQESIITLPHLNHT------QAFLSCSLNWGNSLQI   87 (313)
T ss_dssp             CEEEEECCCTTSCSSCSCSCCEEE-SSSCBCTTC--EECCCSSSCCCEEEEESCCCSS------EEEEEEEEESSSSEEE
T ss_pred             CEEEEEEECCCCCCCCcccceEEE-eCCEECCcc--ceEEEecCeEEEEEEEeccCCC------ccceEEeeecCCCcee
Confidence            39999999998     78999997 588776422  1122233    45999888655      7999999998766654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.56  E-value=4.9e-08  Score=74.09  Aligned_cols=65  Identities=8%  Similarity=0.048  Sum_probs=41.9

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce--EEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--LSR  133 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~--~s~  133 (145)
                      .+.|.|.+.|.    |+|++ +|..+..   ......+    ++|.|.++..+      |+|.|+|.|.|..|..  .+.
T Consensus        17 ~v~L~C~~~~~----v~W~~-~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~n~~g~~~~~~~   82 (289)
T 3mjg_X           17 TFVLTCSGSAP----VVWER-MSQEPPQ---EMAKAQDGTFSSVLTLTNLTGL------DTGEYFCTHNDSRGLETDERK   82 (289)
T ss_dssp             CEEEEEEESSC----CEEEB-TTBCCSE---EEEECTTSCEEEEEEECSCCGG------GCEEEEEECCC------CCCE
T ss_pred             cEEEEEeccce----EEEEC-CCCCccc---ceeccCCCceeEEEEEccCChh------hCEEEEEEEcccCCCCcCcEE
Confidence            39999999995    99985 6666521   1122222    47999888665      8999999999999873  334


Q ss_pred             EEEEE
Q psy5697         134 FVHVK  138 (145)
Q Consensus       134 ~v~v~  138 (145)
                      .+.|.
T Consensus        83 ~~~v~   87 (289)
T 3mjg_X           83 RLYIF   87 (289)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55554

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=97.97  E-value=7.9e-09  Score=69.44  Aligned_cols=60  Identities=15%  Similarity=0.034  Sum_probs=41.5

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeEee-----------cccCceEEe-----eCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDLRIAL-----SNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      ++|.|.+.+.|.+.|.|++.+ |....           ...+.....     .+.+|.|.++..+      |+|.|.|.+
T Consensus        17 v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~   90 (110)
T 1u3h_A           17 AILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG------DSATYFCAA   90 (110)
Confidence            899999999999999998753 32211           011111111     1348999888765      899999999


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      .|.
T Consensus        91 ~~~   93 (110)
T 1u3h_A           91 SAN   93 (110)
Confidence            986

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.55  E-value=6.4e-08  Score=72.72  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=43.4

Q ss_pred             CeEEEeeEecc--CCCEEEEEccC-CeEee---c--------ccCceEEeeC-C--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSN-NTVIA---Y--------VKDLRIALSN-G--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~d-g~~i~---~--------~~~~~~~~~~-G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|.+.|.  |.|.|.|++.+ +....   .        .++......+ +  +|.|.++..+      |+|.|.|.
T Consensus        19 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~   92 (256)
T 3ux9_B           19 RVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSE------DEADYYCQ   92 (256)
T ss_dssp             CEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG------GCEEEEEE
T ss_pred             cEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChh------hCEEEEEE
Confidence            39999999998  89999998743 22111   0        1111122222 2  7999988765      89999999


Q ss_pred             EEcCCCc
Q psy5697         123 ASNEAGV  129 (145)
Q Consensus       123 A~N~~G~  129 (145)
                      |.|..|.
T Consensus        93 ~~~~~~~   99 (256)
T 3ux9_B           93 VRDNNEN   99 (256)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9997653

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.54  E-value=2.2e-07  Score=61.96  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=40.6

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE----eecccCceEEe--e--CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV----IAYVKDLRIAL--S--NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~----i~~~~~~~~~~--~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .++|.|.+.+.+  .+.|.|++.+ |..    +....+.....  .  +.+|.|.++..+      |+|.|.|.+.|.
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~~~~~   88 (108)
T 2coq_A           17 SLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVE------DSGTYKCKAYRR   88 (108)
T ss_dssp             CEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEEEEE
T ss_pred             CEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcc------cCEEEEEEEEeC
Confidence            399999998874  6899998753 321    11111221111  1  237999988765      899999999983

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.54  E-value=3.8e-07  Score=68.10  Aligned_cols=70  Identities=14%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             CeEEEeeEecc-CC-CEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-
Q psy5697          60 RGLELTRQTRY-EP-SQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-  130 (145)
Q Consensus        60 g~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-  130 (145)
                      .+.|.|.+.|. |. ++|+|++.||+.+...........+|      +|.|.+..      .  .|.|+|.|+|..+.. 
T Consensus       147 ~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~------~--~~~ytC~v~~~~~~~~  218 (230)
T 1ypz_F          147 TGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERA------M--GKEHRCIVKHENNKGG  218 (230)
T ss_dssp             CEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGG------T--TSCEEEEEECSSCTTT
T ss_pred             cceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhh------C--CCEEEEEEEECCCCCc
Confidence            38999999987 75 69999865887664211001112344      46664331      1  389999999998754 


Q ss_pred             EEEEEEE
Q psy5697         131 LSRFVHV  137 (145)
Q Consensus       131 ~s~~v~v  137 (145)
                      .+..+..
T Consensus       219 ~~~~~~f  225 (230)
T 1ypz_F          219 ADQAIFF  225 (230)
T ss_dssp             SCEEEEE
T ss_pred             eeEeeec
Confidence            4555544

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.53  E-value=3.1e-07  Score=65.47  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             CEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCceE-EeeCC--cEEEcCCCCC
Q psy5697          47 PFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDLRI-ALSNG--SLMFPPFPET  108 (145)
Q Consensus        47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~~~-~~~~G--sL~i~~~~~~  108 (145)
                      +.+.+.|.. .+..  .++|.|.+.+.+.+.|.|++.+ +.   .+..        .+.... ...++  +|.|.+++.+
T Consensus        17 ~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           17 IVLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPE   96 (146)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHH
Confidence            445555554 2223  3999999999988999999754 21   1211        011111 11222  6999888765


Q ss_pred             CCCCCCCCeEEEEEEEcCC
Q psy5697         109 GFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~  127 (145)
                            |+|+|.|.+.|..
T Consensus        97 ------DsG~Y~C~~~~~~  109 (146)
T 2yc1_B           97 ------DFAIYYCQQYRYS  109 (146)
T ss_dssp             ------GCSEEEEEECSSS
T ss_pred             ------HCEEEEEEEecCC
Confidence                  8999999999874

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.52  E-value=1.5e-07  Score=71.00  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=60.4

Q ss_pred             eecCceeEeeccccCcccCCceeee---EEEeccCCCCCCCEEEEc-CCC-CC--ccCeEEEeeEecc-CC-CEEEEEcc
Q psy5697          10 LADADTYIIADRSLFPRPLGYLVGN---IVYSSRSENEHYPFRIKS-APG-GN--RTRGLELTRQTRY-EP-SQLGWRFS   80 (145)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~P~~i~~-p~~-~~--~~g~~L~C~a~G~-P~-P~i~W~~~   80 (145)
                      ..|+++|.|.........  ..+|.   ..+........+|.+... |.. ..  +..+.|.|.+.|. |. ++|+|++ 
T Consensus        85 ~~D~G~Y~C~~~~~~~~~--~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~-  161 (252)
T 1oga_E           85 KNPTAFYLCASSSRSSYE--QYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV-  161 (252)
T ss_dssp             SCCCEEEEEEEESSTTSC--CEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE-
T ss_pred             hhhCEEEEEEEecCCccc--eeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE-
Confidence            678889998775431000  01111   111111222457766544 432 11  2338999999996 75 4999975 


Q ss_pred             CCeEeecccCce---E--E--eeCCc------EEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          81 NNTVIAYVKDLR---I--A--LSNGS------LMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        81 dg~~i~~~~~~~---~--~--~~~Gs------L~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ||+.+.......   .  .  ..+|+      |.|.+....     .|.|.|+|.|+|....
T Consensus       162 ~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~-----d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          162 NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQ-----NPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             TTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHT-----CTTCEEEEEEEECCBC
T ss_pred             CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhc-----cCCCEEEEEEEcCCCC
Confidence            888775321000   0  0  13454      555432211     1478999999998654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.52  E-value=2.2e-07  Score=68.93  Aligned_cols=62  Identities=13%  Similarity=0.069  Sum_probs=42.7

Q ss_pred             eEEEeeEeccC--CCEEEEEccC-CeE---ee-------------cccCceEEee-----CCcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE--PSQLGWRFSN-NTV---IA-------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~d-g~~---i~-------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.+.|.|  .+.|.|++.+ |..   +.             ..++......     +.+|.|.++..+      |+
T Consensus        18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D~   91 (223)
T 1dee_B           18 LRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE------DT   91 (223)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH------HC
Confidence            99999999987  5899998743 321   10             0112222221     237999988765      89


Q ss_pred             eEEEEEEEcCCC
Q psy5697         117 TVYRCRASNEAG  128 (145)
Q Consensus       117 G~Y~C~A~N~~G  128 (145)
                      |.|.|.+.|..|
T Consensus        92 G~Y~C~~~~~~~  103 (223)
T 1dee_B           92 AVYYCAKVKFYD  103 (223)
T ss_dssp             EEEEEEEESSSS
T ss_pred             EEEEEEEecccc
Confidence            999999999864

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.50  E-value=2.6e-07  Score=72.53  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             eEEEeeEeccC-CCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          61 GLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      ++|.|.+.|.| .|.|+|++++ ..+.. ...+....+++|.|.++..+      |+|.|+|.+   .|.. .+..+.|.
T Consensus        24 v~l~C~~~~~~~~~~i~W~~~~-~~~~~-~~~~~~~~~~~L~i~~v~~~------d~G~Y~C~~---~g~~~~~~~L~V~   92 (325)
T 1n26_A           24 VTLTCPGVEPEDNATVHWVLRK-PAAGS-HPSRWAGMGRRLLLRSVQLH------DSGNYSCYR---AGRPAGTVHLLVD   92 (325)
T ss_dssp             EEEECTTSCTTCCSEEEEEEEC-SSSSC-CCEEEEEESSEEEECSCCGG------GCEEEEEES---SSSCSCEEEEEEC
T ss_pred             EEEEeCCCCCCCCceEEEEECC-ccCCc-cccccccccceEEecccchh------hCeEeEEEe---CCEEeeeEEEEec
Confidence            99999999866 7999998644 33321 12234456789999988655      899999993   6776 45566666


Q ss_pred             eccC
Q psy5697         139 ADSR  142 (145)
Q Consensus       139 ~~~~  142 (145)
                      .++.
T Consensus        93 ~pP~   96 (325)
T 1n26_A           93 VPPE   96 (325)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            4443

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.50  E-value=2.9e-07  Score=69.99  Aligned_cols=85  Identities=14%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CCCCCEEEEcCC-CCCc--cCeEEEeeEec-cC-CCEEEEEccCCeEeecccCceEEeeCC------cEEEcCCCCCCCC
Q psy5697          43 NEHYPFRIKSAP-GGNR--TRGLELTRQTR-YE-PSQLGWRFSNNTVIAYVKDLRIALSNG------SLMFPPFPETGFR  111 (145)
Q Consensus        43 ~~~~P~~i~~p~-~~~~--~g~~L~C~a~G-~P-~P~i~W~~~dg~~i~~~~~~~~~~~~G------sL~i~~~~~~~~~  111 (145)
                      ...+|.+...++ ....  ..+.|.|.+.| .| +++++|+ ++|..+...........+|      +|.|.+...    
T Consensus       138 ~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~-~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~----  212 (248)
T 3u2s_H          138 STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN-SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL----  212 (248)
T ss_dssp             CCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEG-GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGB----
T ss_pred             CCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEe-ECCccCceeecCceECCCCCEEEEEEEEEChhhc----
Confidence            345676654443 3222  23899999988 55 4679996 4665322111111222344      455554322    


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697         112 PDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                        .| |.|+|.|+|..+.. ....+
T Consensus       213 --~~-~~ytC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          213 --GT-QTYICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             --TT-BCCEEEEEEGGGTEEEEEEC
T ss_pred             --CC-CeEEEEEEECCCCcceEEEE
Confidence              15 99999999998765 33333

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.50  E-value=5.1e-07  Score=62.80  Aligned_cols=64  Identities=14%  Similarity=0.030  Sum_probs=42.9

Q ss_pred             CeEEEeeEecc--CCCEEEEEcc-CCeE---e-ecccCceEEee----CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFS-NNTV---I-AYVKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~-dg~~---i-~~~~~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .++|.|.+.+.  +.+.+.|++. .|+.   + ....+......    +.+|.|.+++.+      |+|.|.|.+.|..+
T Consensus        17 svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~------DsG~Y~C~~~~~~~   90 (126)
T 3moq_A           17 SLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVE------DSGTYKCQAFYVFF   90 (126)
T ss_dssp             CEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEEEEEEE
T ss_pred             CEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChH------hCEEEEEEEEEcCC
Confidence            39999999886  6789999974 2322   1 11111111111    227999888765      89999999999866


Q ss_pred             c
Q psy5697         129 V  129 (145)
Q Consensus       129 ~  129 (145)
                      .
T Consensus        91 ~   91 (126)
T 3moq_A           91 A   91 (126)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.49  E-value=4.2e-07  Score=70.27  Aligned_cols=57  Identities=11%  Similarity=0.179  Sum_probs=41.7

Q ss_pred             CeEEEeeEec-------cCCCEEEEEccCCeEeecccCceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTR-------YEPSQLGWRFSNNTVIAYVKDLRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G-------~P~P~i~W~~~dg~~i~~~~~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.|.|.+.|       .|.|.|+|+ +||..+... +. .+..+  ++|.|.++...       .|.|+|.|.|.
T Consensus        21 ~v~l~C~~~~~~~~~~~~p~p~i~W~-~~g~~i~~~-~~-~~~~~~~~~L~i~~~~~~-------~g~Y~C~a~~~   86 (303)
T 1i1r_A           21 NFTAVCVLKEKCMDYFHVNANYIVWK-TNHFTIPKE-QY-TIINRTASSVTFTDIASL-------NIQLTCNILTF   86 (303)
T ss_dssp             CEEEEEEECHHHHHHHTCCGGGEEEE-ETTEECCGG-GC-EEEETTEEEEEECSCCCS-------EEEEEEEEEET
T ss_pred             CEEEEEEECCccccccCCChhheEEE-ECCEECChh-he-eeeCCcEEEEEEcCcCCC-------ceEEEEecccC
Confidence            3999999996       489999997 588887543 22 33332  36999877532       59999999884

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.49  E-value=5.9e-07  Score=59.86  Aligned_cols=72  Identities=13%  Similarity=-0.003  Sum_probs=46.0

Q ss_pred             eEEEeeEec-cCCCEEEEEccC-Ce-----E-eec--------ccCceEE-----eeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSN-NT-----V-IAY--------VKDLRIA-----LSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~d-g~-----~-i~~--------~~~~~~~-----~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +.|.|...+ .+.+.+.|++.+ +.     . +..        ..+....     ..+.+|.|.+++.+      |+|.|
T Consensus        15 v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------DsG~Y   88 (116)
T 2or8_A           15 VTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES------DSGLY   88 (116)
T ss_dssp             EEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG------GCEEE
T ss_pred             EEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcc------cCEEE
Confidence            999999876 456789999754 10     0 100        0111111     12348999988765      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEE
Q psy5697         120 RCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .|.+.|..+.. ....++|.
T Consensus        89 ~C~v~~~~~~~~~~~~~~l~  108 (116)
T 2or8_A           89 CCRVEIPGWFNDQKVTFSLQ  108 (116)
T ss_dssp             EEEECCSSTTCCEEEEEEEE
T ss_pred             EEEEEcCCcccccEEEEEEE
Confidence            99999986543 35556665

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.48  E-value=1.5e-07  Score=63.60  Aligned_cols=62  Identities=11%  Similarity=0.101  Sum_probs=41.8

Q ss_pred             CeEEEeeEecc-CCCEEEEEccCCe---Eeeccc-----CceEE-----eeC--CcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSNNT---VIAYVK-----DLRIA-----LSN--GSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~dg~---~i~~~~-----~~~~~-----~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .++|.|.+.+. |.+.|.|++.++.   .+....     +....     ..+  .+|.|.++..+      |+|.|.|.+
T Consensus        24 ~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~~   97 (120)
T 2yz1_A           24 STVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPE------DAGTYYCVK   97 (120)
T ss_dssp             CEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGG------GCEEEEEEE
T ss_pred             CEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHH------HCEEEEEEE
Confidence            39999999876 7789999976532   221110     11101     112  47999988765      899999999


Q ss_pred             EcCC
Q psy5697         124 SNEA  127 (145)
Q Consensus       124 ~N~~  127 (145)
                      .|..
T Consensus        98 ~~~~  101 (120)
T 2yz1_A           98 FQKG  101 (120)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            9874

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.48  E-value=2.3e-07  Score=62.41  Aligned_cols=62  Identities=18%  Similarity=0.263  Sum_probs=41.5

Q ss_pred             CeEEEeeEeccCC------CEEEEEccC-Ce---Eeec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRYEP------SQLGWRFSN-NT---VIAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~P~------P~i~W~~~d-g~---~i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .++|.|.+.+.+.      +.+.|++.+ |.   .+..        .++.... ..++  +|.|.++..+      |+|.
T Consensus        18 ~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~------DsG~   91 (114)
T 1eeq_A           18 RATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAE------DVAV   91 (114)
T ss_dssp             CEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEE
T ss_pred             eEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcc------cCEE
Confidence            3999999999883      899999753 22   1210        1111111 2223  7999988765      8999


Q ss_pred             EEEEEEcCC
Q psy5697         119 YRCRASNEA  127 (145)
Q Consensus       119 Y~C~A~N~~  127 (145)
                      |.|.+.|..
T Consensus        92 Y~C~~~~~~  100 (114)
T 1eeq_A           92 YYCQQYYSH  100 (114)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEeeCC
Confidence            999999863

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.47  E-value=6.2e-07  Score=73.47  Aligned_cols=76  Identities=11%  Similarity=-0.018  Sum_probs=48.0

Q ss_pred             CCEE-EEcCCCC-Ccc--CeEEEeeEeccCC---CEEEEEccCCeEeecc-cCceEEe------eCCcEEEcCCCCCCCC
Q psy5697          46 YPFR-IKSAPGG-NRT--RGLELTRQTRYEP---SQLGWRFSNNTVIAYV-KDLRIAL------SNGSLMFPPFPETGFR  111 (145)
Q Consensus        46 ~P~~-i~~p~~~-~~~--g~~L~C~a~G~P~---P~i~W~~~dg~~i~~~-~~~~~~~------~~GsL~i~~~~~~~~~  111 (145)
                      +|.+ +..|... ...  .+.|.|.+.|.|+   +.|+| . ++ .+... .......      ..++|.|.++..+   
T Consensus       246 ~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~---  319 (475)
T 1iga_A          246 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN---  319 (475)
T ss_pred             CcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CC-CcCCccccCceECCCCCEEEEEEEEEchHHhc---
Confidence            5554 5544432 123  3899999999865   79999 3 32 22211 1111111      2346888877654   


Q ss_pred             CCCCCeEEEEEEEcCCCce
Q psy5697         112 PDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~  130 (145)
                         |+|.|+|.|.|..|..
T Consensus       320 ---d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          320 ---HGKTFTCTAAYPESKT  335 (475)
T ss_pred             ---cCCcEEEEEEcCCCCC
Confidence               8999999999999986

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.45  E-value=3.6e-07  Score=70.08  Aligned_cols=63  Identities=13%  Similarity=0.131  Sum_probs=43.6

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee----c------------ccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA----Y------------VKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~----~------------~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .+.|.|++.+ |..+.    .            ..+......     +.+|.|.++..+      |
T Consensus        23 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D   96 (261)
T 2xqy_G           23 SVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSE------D   96 (261)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------G
T ss_pred             CEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcc------c
Confidence            399999999988  7999998753 32211    0            111222221     248999988765      8


Q ss_pred             CeEEEEEEEcCCC
Q psy5697         116 STVYRCRASNEAG  128 (145)
Q Consensus       116 ~G~Y~C~A~N~~G  128 (145)
                      +|.|.|.+.|..+
T Consensus        97 sG~Y~C~~~~~~~  109 (261)
T 2xqy_G           97 SAVYYCGRLGYVY  109 (261)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             CeEEEEEEecCCC
Confidence            9999999999754

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.45  E-value=7.8e-07  Score=66.08  Aligned_cols=59  Identities=12%  Similarity=0.114  Sum_probs=39.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-Ce------------Eeec--ccCceEEee----CCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NT------------VIAY--VKDLRIALS----NGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~------------~i~~--~~~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.+ |.+.|.|++.+ +.            ....  .++......    +.+|.|.+++.+      |+|.|+
T Consensus        19 ~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~------D~G~Y~   91 (240)
T 3q5y_A           19 RSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE------DSAMYF   91 (240)
T ss_dssp             CEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG------GCEEEE
T ss_pred             cEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChh------HCEEEE
Confidence            3999999988 89999998721 11            1110  111222222    237999988765      899999


Q ss_pred             EEEEc
Q psy5697         121 CRASN  125 (145)
Q Consensus       121 C~A~N  125 (145)
                      |.|.+
T Consensus        92 C~~~~   96 (240)
T 3q5y_A           92 CASSL   96 (240)
T ss_dssp             EEEES
T ss_pred             EEEcc
Confidence            99984

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.44  E-value=5.3e-07  Score=67.64  Aligned_cols=62  Identities=8%  Similarity=0.031  Sum_probs=42.0

Q ss_pred             CeEEEeeEecc--CCCEEEEEccC-CeE---eec-------------ccCceEEe-e----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSN-NTV---IAY-------------VKDLRIAL-S----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~d-g~~---i~~-------------~~~~~~~~-~----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.  +.+.|.|++.+ |..   +..             ..+..... .    +.+|.|.++..+      |
T Consensus        18 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   91 (242)
T 1hxm_B           18 TARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ------D   91 (242)
T ss_dssp             CEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             cEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcc------c
Confidence            39999999996  78999998743 321   110             11122222 1    237999888765      8


Q ss_pred             CeEEEEEEEcCC
Q psy5697         116 STVYRCRASNEA  127 (145)
Q Consensus       116 ~G~Y~C~A~N~~  127 (145)
                      +|.|.|.+.|..
T Consensus        92 ~G~Y~C~~~~~~  103 (242)
T 1hxm_B           92 IATYYCALWEAQ  103 (242)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEEEEEeeecCC
Confidence            999999999974

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.44  E-value=4.9e-07  Score=61.01  Aligned_cols=61  Identities=10%  Similarity=-0.041  Sum_probs=40.8

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE---ee-cccCceEEe--eC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV---IA-YVKDLRIAL--SN--GSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~-~~~~~~~~~--~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.|.|.+.+.+  .+.+.|++.+ |..   +. ...+.....  ..  .+|.|.++..+      |+|.|.|.+.|.
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~~~~~   88 (113)
T 1sq2_N           17 SLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVE------DGGTYRCGLGVA   88 (113)
T ss_dssp             CEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEECBT
T ss_pred             CEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChh------hCEEEEEEEEeC
Confidence            399999999877  6799998743 322   11 111221111  12  27999988765      899999999984

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.43  E-value=1.6e-06  Score=69.70  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             ecCceeEeeccccCcccCCceeeeEEEeccCCCCCCCEEEEcCCCC---CccCeEEEeeEeccC--CCEEEEEccCCeEe
Q psy5697          11 ADADTYIIADRSLFPRPLGYLVGNIVYSSRSENEHYPFRIKSAPGG---NRTRGLELTRQTRYE--PSQLGWRFSNNTVI   85 (145)
Q Consensus        11 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~P~~i~~p~~~---~~~g~~L~C~a~G~P--~P~i~W~~~dg~~i   85 (145)
                      .|.+.|.|.........  .+..  ..........+|.+...++..   ....+.|.|.|.|.+  .++|+|+ +||+.+
T Consensus       243 ~D~g~Y~C~~~~~~~~~--~~~~--~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~-k~g~~~  317 (376)
T 2aty_A          243 LNGKEFKCRVNSAAFPA--PIEK--TISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQ-WNGQPA  317 (376)
T ss_pred             cCCCEEEEEEecCCCCC--ceEE--EEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEE-ECCEEC
Confidence            36677887764432211  1111  111222445678776666552   223389999999964  4589997 588876


Q ss_pred             ecccCce-EEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          86 AYVKDLR-IALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        86 ~~~~~~~-~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      ....... ....+|+..+.   .+...   ...|.|.|+|.|+|..-.
T Consensus       318 ~~~~~~~~~~~~dgty~~~s~L~i~~~---~~~~~~~YtC~v~h~~l~  362 (376)
T 2aty_A          318 ENYKNTQPIMNTNESYFVYSKLNVQKS---NWEAGNTFTCSVLHEGLH  362 (376)
T ss_pred             CCeEeCCceECCCCCEEEEEEEEEcHH---HhCCCCcEEEEEEeCCCC
Confidence            4321111 22445543221   12221   112589999999998643

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.43  E-value=1.2e-06  Score=65.27  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=61.2

Q ss_pred             eeceee-eecCceeEeeccccCc--c-cCCceeeeEEEe-ccCCCCCCCEEEE-cCCCCCcc--CeEEEeeEecc-C-CC
Q psy5697           4 FHISTL-LADADTYIIADRSLFP--R-PLGYLVGNIVYS-SRSENEHYPFRIK-SAPGGNRT--RGLELTRQTRY-E-PS   73 (145)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~p--~-~~~~~~~~~~~~-~~~~~~~~P~~i~-~p~~~~~~--g~~L~C~a~G~-P-~P   73 (145)
                      ++|+.+ ..|.++|.|.......  . .-...+|..+.- .......+|.+.. .|......  .+.|.|.+.|. | ++
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~  160 (230)
T 3n9g_H           81 MELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  160 (230)
T ss_dssp             EEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCC
T ss_pred             EEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCE
Confidence            344444 7888899998754210  0 000022221111 1112345676654 33332223  38999999984 4 35


Q ss_pred             EEEEEccCCeEeecc--cCceEEeeCC------cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          74 QLGWRFSNNTVIAYV--KDLRIALSNG------SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        74 ~i~W~~~dg~~i~~~--~~~~~~~~~G------sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +|+|   ||..+...  ........+|      +|.|.+....      | |.|+|.|+|..+..
T Consensus       161 ~v~W---~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~------~-~~ytC~v~h~~~~~  215 (230)
T 3n9g_H          161 TVSW---NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG------T-QTYICNVNHKPSNT  215 (230)
T ss_dssp             EEEE---GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBT------T-BCCEEEEEEGGGTE
T ss_pred             EEEE---CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcC------C-CeEEEEEEECCCCc
Confidence            6999   34333210  0001122334      5777654322      7 99999999998765

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.42  E-value=5.3e-07  Score=69.21  Aligned_cols=62  Identities=11%  Similarity=0.080  Sum_probs=43.3

Q ss_pred             eEEEeeEeccC--CCEEEEEccC-CeEee----------------cccCceEEee-----CCcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE--PSQLGWRFSN-NTVIA----------------YVKDLRIALS-----NGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~d-g~~i~----------------~~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ++|.|.+.|.|  .+.|.|++.+ |..+.                ..++......     +.+|.|.++..+      |+
T Consensus        18 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------Ds   91 (257)
T 3bn9_D           18 LRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE------DT   91 (257)
T ss_dssp             EEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG------GC
T ss_pred             EEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh------hC
Confidence            99999999987  7899998754 32111                0111222221     237999988765      89


Q ss_pred             eEEEEEEEcCCC
Q psy5697         117 TVYRCRASNEAG  128 (145)
Q Consensus       117 G~Y~C~A~N~~G  128 (145)
                      |.|.|.+.|..|
T Consensus        92 G~Y~C~~~~~~g  103 (257)
T 3bn9_D           92 AVYYCARPYLTY  103 (257)
T ss_dssp             EEEEEEEECCSS
T ss_pred             EEEEEEEecCCC
Confidence            999999999876

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.41  E-value=9.6e-07  Score=64.90  Aligned_cols=62  Identities=8%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee------------------cccCceEEeeCC-----cEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA------------------YVKDLRIALSNG-----SLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~------------------~~~~~~~~~~~G-----sL~i~~~~~~~~~~~  113 (145)
                      .+.|.|.+.|.+  .+.|.|++.+ |....                  ..++......++     +|.|.++..+     
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~-----   91 (221)
T 3m8o_H           17 SLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSD-----   91 (221)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGG-----
T ss_pred             CEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHH-----
Confidence            399999999855  7899998643 32110                  011122222222     5999988766     


Q ss_pred             CCCeEEEEEEEcCC
Q psy5697         114 VHSTVYRCRASNEA  127 (145)
Q Consensus       114 ~d~G~Y~C~A~N~~  127 (145)
                       |+|.|.|.+.|..
T Consensus        92 -DsG~Y~C~~~~~~  104 (221)
T 3m8o_H           92 -DTAMYYCVIRGDV  104 (221)
T ss_dssp             -GCEEEEEEEESCT
T ss_pred             -HCEEEEEEEECCC
Confidence             8999999999974

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.40  E-value=1.4e-06  Score=64.36  Aligned_cols=61  Identities=13%  Similarity=0.004  Sum_probs=41.1

Q ss_pred             eEEEeeEeccCCCEEEEEccC-Ce---Eee------cccCceEEeeC------CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NT---VIA------YVKDLRIALSN------GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~---~i~------~~~~~~~~~~~------GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      +.|.|.+.+.+ +.|.|++.+ |.   .+.      ...+......+      .+|.|.+++.+      |+|.|.|.+.
T Consensus        19 v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~~~   91 (207)
T 1ypz_E           19 SALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE------DSGTYFCAAD   91 (207)
T ss_dssp             EEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGG------GCEEEEEEEE
T ss_pred             EEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHH------HCEEEEEEEe
Confidence            99999998865 699998743 32   111      01122222222      37999988765      8999999999


Q ss_pred             cCCC
Q psy5697         125 NEAG  128 (145)
Q Consensus       125 N~~G  128 (145)
                      |..|
T Consensus        92 ~~~~   95 (207)
T 1ypz_E           92 TWHI   95 (207)
T ss_dssp             CBCC
T ss_pred             cCCc
Confidence            9853

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.39  E-value=4.2e-07  Score=70.30  Aligned_cols=62  Identities=15%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE---ee-------------ccc-CceEEe----eCCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV---IA-------------YVK-DLRIAL----SNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~-------------~~~-~~~~~~----~~GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.|  .|.|.|++.+ |..   +.             ..+ +.....    .+++|.|.++..+      |
T Consensus        39 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D  112 (291)
T 2gki_A           39 SVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSE------D  112 (291)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGG------G
T ss_pred             CEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHH------H
Confidence            399999999988  6899998743 221   10             011 111111    1247999988765      8


Q ss_pred             CeEEEEEEEcCC
Q psy5697         116 STVYRCRASNEA  127 (145)
Q Consensus       116 ~G~Y~C~A~N~~  127 (145)
                      +|.|.|.+.|..
T Consensus       113 sG~Y~C~~~~~~  124 (291)
T 2gki_A          113 SAVYYCARGAYK  124 (291)
T ss_dssp             CEEEEEEEECGG
T ss_pred             CEEEEEEEeccc
Confidence            999999999985

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.38  E-value=1.3e-06  Score=58.09  Aligned_cols=75  Identities=11%  Similarity=-0.058  Sum_probs=48.3

Q ss_pred             CeEEEeeEeccC-CCEEEEEccC-CeE---eec-------ccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYE-PSQLGWRFSN-NTV---IAY-------VKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P-~P~i~W~~~d-g~~---i~~-------~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|...+.. .+.+.|++.+ +..   +-.       ..+....   ..++  +|.|.++..+      |+|.|.|.
T Consensus        13 ~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~   86 (110)
T 2q87_A           13 SLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEE------DAGTYWCG   86 (110)
T ss_dssp             CEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGG------GCEEEEEE
T ss_pred             cEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHH------HCEEEEEE
Confidence            399999987754 4799999753 221   100       1111122   1223  7999888765      89999999


Q ss_pred             EEcCC-C--ceEEEEEEEEec
Q psy5697         123 ASNEA-G--VILSRFVHVKAD  140 (145)
Q Consensus       123 A~N~~-G--~~~s~~v~v~~~  140 (145)
                      +.|.. |  ......++|...
T Consensus        87 ~~~~~~g~~~~~~~~v~v~V~  107 (110)
T 2q87_A           87 VDTPWLQDFHDPVVEVEVSVF  107 (110)
T ss_dssp             EECTTSCCBCCCSEEEEEEEC
T ss_pred             EecCccCccCCccEEEEEEEe
Confidence            99997 6  345566666654

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.37  E-value=8.7e-07  Score=59.41  Aligned_cols=62  Identities=19%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             CeEEEeeEeccC-----CCEEEEEccC-Ce---Eeec--------ccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYE-----PSQLGWRFSN-NT---VIAY--------VKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P-----~P~i~W~~~d-g~---~i~~--------~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|.+.+.+     .+.+.|++.. |.   .+..        .++.... ..++  +|.|.+++.+      |+|.|
T Consensus        18 ~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~------DsG~Y   91 (113)
T 1dlf_L           18 QASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE------DLGVY   91 (113)
T ss_dssp             CEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG------GCEEE
T ss_pred             CEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChH------HCEEE
Confidence            399999999887     4899998743 22   1210        1111111 2223  7999988765      89999


Q ss_pred             EEEEEcCC
Q psy5697         120 RCRASNEA  127 (145)
Q Consensus       120 ~C~A~N~~  127 (145)
                      .|.+.|..
T Consensus        92 ~C~~~~~~   99 (113)
T 1dlf_L           92 FCSQSTHV   99 (113)
T ss_dssp             EEEECSSS
T ss_pred             EEEEecCC
Confidence            99999863

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.37  E-value=7.8e-07  Score=68.40  Aligned_cols=61  Identities=8%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             CeEEEeeEecc--CCCEEEEEccC-CeEee----c------------ccCceEEeeC-----CcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSN-NTVIA----Y------------VKDLRIALSN-----GSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~d-g~~i~----~------------~~~~~~~~~~-----GsL~i~~~~~~~~~~~~d  115 (145)
                      .++|.|.+.|.  |.+.|.|++.+ +....    .            .++......+     .+|.|.++..+      |
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~------D   90 (280)
T 3fku_X           17 SVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSE------D   90 (280)
T ss_dssp             CEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCST------T
T ss_pred             cEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh------h
Confidence            39999999987  67899998643 21110    0            0111122211     27999988766      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +|.|.|.+.|.
T Consensus        91 sG~Y~C~~~~~  101 (280)
T 3fku_X           91 TAVYYCARSPS  101 (280)
T ss_dssp             CEECCEEECSS
T ss_pred             CEEEEEEEecC
Confidence            99999999997

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.37  E-value=9.4e-07  Score=66.79  Aligned_cols=60  Identities=17%  Similarity=0.046  Sum_probs=40.4

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeEe------------ec--cc-CceEEee----CCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTVI------------AY--VK-DLRIALS----NGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~i------------~~--~~-~~~~~~~----~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|.+. .|.+.|.|++. +|...            ..  .+ +......    +++|.|.+++.+      |+|.|
T Consensus        43 ~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~------D~G~Y  115 (268)
T 3pl6_D           43 YVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG------DSAVY  115 (268)
T ss_dssp             CEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG------GCEEE
T ss_pred             CEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc------cCEEE
Confidence            399999987 58999999873 22211            00  00 1222222    447999988765      89999


Q ss_pred             EEEEEcC
Q psy5697         120 RCRASNE  126 (145)
Q Consensus       120 ~C~A~N~  126 (145)
                      .|.+.|.
T Consensus       116 ~C~~~~~  122 (268)
T 3pl6_D          116 LCATSAL  122 (268)
T ss_dssp             EEEEESS
T ss_pred             EEEEecC
Confidence            9999985

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.37  E-value=1.1e-06  Score=65.58  Aligned_cols=60  Identities=13%  Similarity=0.064  Sum_probs=40.6

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeE---ee------------cccCceEEee---CC--cEEEcCCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTV---IA------------YVKDLRIALS---NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~------------~~~~~~~~~~---~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      .+.|.|.+.|.|  .+.|.|++.+ |..   +.            ..++......   ++  +|.|.++..+      |+
T Consensus        17 ~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D~   90 (232)
T 1dn0_B           17 TLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA------DT   90 (232)
T ss_dssp             CEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             cEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc------cC
Confidence            399999999986  6899998753 321   10            0112222221   23  8999988765      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      |.|.|.+.+
T Consensus        91 G~Y~C~~~~   99 (232)
T 1dn0_B           91 AVYYCARPP   99 (232)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEec
Confidence            999999993

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.36  E-value=1.2e-07  Score=76.56  Aligned_cols=73  Identities=16%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             CeEEEeeEeccC--CCEEEEEccC-CeEee---c-------------ccCceEEee-----CCcEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFSN-NTVIA---Y-------------VKDLRIALS-----NGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~d-g~~i~---~-------------~~~~~~~~~-----~GsL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.+.|.+  .+.|.|++.+ |..+.   .             ..+......     +++|.|.++..+      |
T Consensus        16 ~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------D   89 (434)
T 1igy_B           16 SVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD------D   89 (434)
T ss_dssp             CEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGG------G
T ss_pred             CEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChH------H
Confidence            399999999975  7899998753 33211   0             111222222     238999988765      8


Q ss_pred             CeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         116 STVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       116 ~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|+|.|.|..+.. ....+.|.
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~l~V~  113 (434)
T 1igy_B           90 SAVYYCVREGEVPYWGQGTTVTVS  113 (434)
T ss_dssp             CSEECCCCSSSSCCCCCCEECEEC
T ss_pred             CEEEEEEEEccccccCCceEEEEc
Confidence            999999999965433 23344443

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.36  E-value=2e-06  Score=57.32  Aligned_cols=71  Identities=11%  Similarity=-0.004  Sum_probs=44.6

Q ss_pred             eEEEeeEeccCC-CEEEEEccCC-e---Eeec--------ccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYEP-SQLGWRFSNN-T---VIAY--------VKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P~-P~i~W~~~dg-~---~i~~--------~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      ++|.|...+.+. ..+.|++.+. .   .+-.        ..+.....   .++  +|.|.+++.+      |+|.|.|.
T Consensus        19 v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~------DsG~Y~C~   92 (113)
T 1zox_A           19 LTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMS------DAGIYWCG   92 (113)
T ss_dssp             EEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGG------GCEEEEEE
T ss_pred             EEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHH------HCEEEEEe
Confidence            999999987544 4699997542 1   1210        01111121   233  7999888765      89999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy5697         123 ASNEAGVILSRFVHVK  138 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~  138 (145)
                      +.|.. ...+..+.|.
T Consensus        93 v~~~~-~~~~~~v~L~  107 (113)
T 1zox_A           93 ITKGG-LDPMFKVTVN  107 (113)
T ss_dssp             ECCSS-SCCEEEEEEE
T ss_pred             eEcCC-CCccEEEEEE
Confidence            99974 4444555554

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.35  E-value=8.2e-07  Score=66.31  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee-----------cccCceEEe----eCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA-----------YVKDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-----------~~~~~~~~~----~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.+ +.+.|.|++.+ |..   +.           ..++.....    .+++|.|.+++.+      |+|.|.
T Consensus        16 ~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~------D~G~Y~   88 (238)
T 1bec_A           16 KVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS------QTSVYF   88 (238)
T ss_dssp             CEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG------GCEEEE
T ss_pred             cEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc------cCEEEE
Confidence            3999999954 78999998753 321   10           011111221    1238999988765      899999


Q ss_pred             EEEEcCC
Q psy5697         121 CRASNEA  127 (145)
Q Consensus       121 C~A~N~~  127 (145)
                      |.+.|..
T Consensus        89 C~~~~~~   95 (238)
T 1bec_A           89 CASGGGR   95 (238)
T ss_dssp             EEEESCT
T ss_pred             EEEecCC
Confidence            9999985

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.34  E-value=6.2e-07  Score=72.87  Aligned_cols=86  Identities=12%  Similarity=0.105  Sum_probs=52.3

Q ss_pred             CCEE-EEcCCCC--C--ccCeEEEeeEeccCCC----EEEEEccCCeEeeccc-CceEEeeCCcEEEcCCCCCCCCCCCC
Q psy5697          46 YPFR-IKSAPGG--N--RTRGLELTRQTRYEPS----QLGWRFSNNTVIAYVK-DLRIALSNGSLMFPPFPETGFRPDVH  115 (145)
Q Consensus        46 ~P~~-i~~p~~~--~--~~g~~L~C~a~G~P~P----~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~~~~~~~~~~~d  115 (145)
                      +|.+ +..|...  .  +..+.|.|.+.|.|++    +|+|++ ||..+.... .......+|++.+.....  . ...|
T Consensus       247 ~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k-~~~~~~~~~~~~~~~~~~g~~~~~~~l~--i-~~~d  322 (457)
T 1hzh_H          247 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV-DGVEVHNAKTKPREEQYNSTYRVVSVLT--V-LHQD  322 (457)
T ss_dssp             SCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE-TTEEECCCEEEEEEECTTSCEEEEEEEC--C-CHHH
T ss_pred             CceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe-CCccccccccccceecCCCcEEEEEEEE--E-CHHH
Confidence            5665 5544331  2  2338999999999764    999984 777764321 112345577777653210  0 1114


Q ss_pred             ---CeEEEEEEEcCCCce-EEEEE
Q psy5697         116 ---STVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus       116 ---~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                         +|.|+|.|.|..+.. .+..+
T Consensus       323 ~~d~G~Y~C~a~n~~~~~~~~~~v  346 (457)
T 1hzh_H          323 WLNGKEYKCKVSNKALPAPIEKTI  346 (457)
T ss_dssp             HHHTCCEEEEEECTTSSSCEEEEE
T ss_pred             ccCCCcEEEEEeCCCCCCcceEEE
Confidence               999999999986654 33333

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.34  E-value=9.5e-07  Score=66.54  Aligned_cols=63  Identities=8%  Similarity=-0.033  Sum_probs=42.4

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeE---eec-----------ccC-ceEEeeCCc--EEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTV---IAY-----------VKD-LRIALSNGS--LMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~---i~~-----------~~~-~~~~~~~Gs--L~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+.|.|.+.+.+.+.|.|++. .|..   +..           .++ ......++.  |.|.+++.+      |+|.|.|
T Consensus        18 ~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~------DsG~Y~C   91 (253)
T 3to4_D           18 AVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS------QGRTLYC   91 (253)
T ss_dssp             CEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS------SCEEEEE
T ss_pred             cEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh------hCeEEEE
Confidence            399999999999999999863 2221   100           011 112222222  999988766      8999999


Q ss_pred             EEEcCCC
Q psy5697         122 RASNEAG  128 (145)
Q Consensus       122 ~A~N~~G  128 (145)
                      .+.|..+
T Consensus        92 ~~~~~~~   98 (253)
T 3to4_D           92 TSSADHW   98 (253)
T ss_dssp             EEECSCC
T ss_pred             EEecCCC
Confidence            9998765

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.34  E-value=5.7e-07  Score=59.97  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             CeEEEee-EeccC-CCEEEEEccCCeE--eec--------ccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTR-QTRYE-PSQLGWRFSNNTV--IAY--------VKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~-a~G~P-~P~i~W~~~dg~~--i~~--------~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|. +.+.+ .+.+.|++.+..+  +-.        .++.....   ..+  +|.|.++..+      |+|.|.|.
T Consensus        17 ~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~   90 (109)
T 1pew_A           17 TVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE------DEADYYCQ   90 (109)
T ss_dssp             CEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEE
T ss_pred             CEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChh------hCEEEEEE
Confidence            3999999 88876 5899999755221  100        01111221   222  7999988765      89999999


Q ss_pred             EEcCC
Q psy5697         123 ASNEA  127 (145)
Q Consensus       123 A~N~~  127 (145)
                      +.|..
T Consensus        91 ~~~~~   95 (109)
T 1pew_A           91 SYDAR   95 (109)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99863

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.32  E-value=2.7e-06  Score=58.33  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=46.0

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEe-------ccCCCEEEEEccCC-e----Eeec----------ccCceEEee-----
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQT-------RYEPSQLGWRFSNN-T----VIAY----------VKDLRIALS-----   96 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~-------G~P~P~i~W~~~dg-~----~i~~----------~~~~~~~~~-----   96 (145)
                      .++++.|.. .+  +..+.|.|...       +.+.+.+.|++.+. .    .+..          .++......     
T Consensus         7 ~~~~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~   86 (132)
T 1nko_A            7 DYSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTK   86 (132)
T ss_dssp             GCEEEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGT
T ss_pred             CeEEeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCC
Confidence            345555554 22  23399999987       45678999997532 1    1211          111222222     


Q ss_pred             CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          97 NGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.+|.|.+++.+      |+|.|.|.+.+..
T Consensus        87 ~~sL~I~~v~~~------DsG~Y~C~v~~~~  111 (132)
T 1nko_A           87 NCTLSIRDARMS------DAGRYFFRMEKGN  111 (132)
T ss_dssp             BCCEEECSCCGG------GCEEEEEEEEETT
T ss_pred             ceEEEEcccCcc------cCeeEEEEEEcCC
Confidence            228999988766      8999999999864

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.31  E-value=2e-06  Score=60.99  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-Ce---Eeec--------ccCc-eEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NT---VIAY--------VKDL-RIALSNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~---~i~~--------~~~~-~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+.+.+.+.+.|++.+ |+   .+-.        .+.. .....++  +|.|.+++.+      |+|.|.|.+.
T Consensus        17 ~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~------DsG~Y~C~~~   90 (143)
T 3u6r_L           17 RATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPE------DFAVYYCQQR   90 (143)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCccc------CCEEEEEEEe
Confidence            3999999999888899999753 22   1211        1111 1112222  7999888765      8999999999


Q ss_pred             cCCCce--EEEEEEEE
Q psy5697         125 NEAGVI--LSRFVHVK  138 (145)
Q Consensus       125 N~~G~~--~s~~v~v~  138 (145)
                      |.. ..  ....+.|.
T Consensus        91 ~~~-~~fg~gt~L~V~  105 (143)
T 3u6r_L           91 SDW-VTFGGGTKVEIK  105 (143)
T ss_dssp             SSB-CEECCCEEEEEC
T ss_pred             cCC-CEECCCEEEEEC
Confidence            875 22  22455555

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.29  E-value=2e-06  Score=69.03  Aligned_cols=63  Identities=11%  Similarity=0.065  Sum_probs=40.9

Q ss_pred             eEEEeeEecc-CCC---EEEEEccCCeEeecc-cCceEEee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTRY-EPS---QLGWRFSNNTVIAYV-KDLRIALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G~-P~P---~i~W~~~dg~~i~~~-~~~~~~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.+.|. |.|   +|+|++.+ ..+... ........      ..+|.|.++..+      |+|.|+|.|.|..+.
T Consensus       186 v~L~C~~~g~~P~p~~~~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~------D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          186 PKVTCVVVDISKDDPEVQFSWFVDD-VEVHTAQTQPREEQFNSTFRSVSELPIMHQDWL------NGKEFKCRVNSAAFP  258 (376)
T ss_pred             eEEEEEEeccccCCCccEEEEEECC-ccccCcccCCCCcccCCcEEEEEEEEechHhcc------CCCEEEEEEecCCCC
Confidence            8999999998 444   69998644 333211 11111112      226888665443      899999999999875


Q ss_pred             e
Q psy5697         130 I  130 (145)
Q Consensus       130 ~  130 (145)
                      .
T Consensus       259 ~  259 (376)
T 2aty_A          259 A  259 (376)
T ss_pred             C
Confidence            3

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.29  E-value=5.3e-07  Score=61.20  Aligned_cols=61  Identities=10%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             CeEEEeeEeccC----CCEEEEEccC---CeEeec----ccCceEEe------eC--CcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYE----PSQLGWRFSN---NTVIAY----VKDLRIAL------SN--GSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P----~P~i~W~~~d---g~~i~~----~~~~~~~~------~~--GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.+.+.+    .+.|.|++.+   |+.+..    ..+.....      .+  .+|.|.+++.+      |+|.|.
T Consensus        24 ~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~------DsG~Y~   97 (120)
T 3noi_A           24 SAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGH------DASIYV   97 (120)
T ss_dssp             CEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGG------GCEEEE
T ss_pred             CEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChh------hCEEEE
Confidence            399999998876    6789999865   444331    11111111      22  38999988766      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+...
T Consensus        98 C~v~~~  103 (120)
T 3noi_A           98 CRVEVL  103 (120)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999853

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.28  E-value=1.2e-06  Score=60.49  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             eEEEeeEeccC-CCEEEEEccC-Ce---Ee-ec--------ccCceEEe--eC---CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYE-PSQLGWRFSN-NT---VI-AY--------VKDLRIAL--SN---GSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P-~P~i~W~~~d-g~---~i-~~--------~~~~~~~~--~~---GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.|.|.+.+.+ ...+.|++.+ |+   .+ ..        .++.....  .+   .+|.|.+++.+      |+|.|.|
T Consensus        19 vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~------Dsg~Y~C   92 (129)
T 3rrq_A           19 ATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRN------DSGTYLC   92 (129)
T ss_dssp             EEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGG------GCEEEEE
T ss_pred             EEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChh------HCEEEEE
Confidence            99999998876 5789998642 21   11 10        01111221  11   27999888765      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .+.|..+..
T Consensus        93 ~~~~~~~~~  101 (129)
T 3rrq_A           93 GAISLAPKL  101 (129)
T ss_dssp             EEEECGGGC
T ss_pred             EEEecCCCc
Confidence            999988765

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.27  E-value=1.5e-06  Score=58.87  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             eEEEeeEeccC---CCEEEEEccC-Ce-E--eec--------ccCce-EEeeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYE---PSQLGWRFSN-NT-V--IAY--------VKDLR-IALSNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P---~P~i~W~~~d-g~-~--i~~--------~~~~~-~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +.|.|.+.+.+   .+.+.|++.. |+ +  +..        .++.. ....++  +|.|.+++.+      |+|.|.|.
T Consensus        18 v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~------DsG~Y~C~   91 (120)
T 1oaq_L           18 VTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTE------DEAIYFCA   91 (120)
T ss_dssp             EEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG------GCEEEEEE
T ss_pred             EEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChh------hCeEEEEE
Confidence            99999999887   6899998742 22 1  110        11111 122233  7999988765      89999999


Q ss_pred             EEcCCCceE--EEEEEEE
Q psy5697         123 ASNEAGVIL--SRFVHVK  138 (145)
Q Consensus       123 A~N~~G~~~--s~~v~v~  138 (145)
                      +.|..+...  ...+.|.
T Consensus        92 ~~~~~~~~fg~gt~L~V~  109 (120)
T 1oaq_L           92 LWYSNHLVFGGGTKLTVL  109 (120)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EccCCCcEECCCEEEEEc
Confidence            998754322  2355554

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.27  E-value=1.8e-06  Score=57.77  Aligned_cols=72  Identities=10%  Similarity=-0.032  Sum_probs=44.7

Q ss_pred             CeEEEeeEecc--CCCEEEEEccC-------CeEe-------e-cccCceEEe-----eCCcEEEcCCCCCCCCCCCCCe
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFSN-------NTVI-------A-YVKDLRIAL-----SNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~d-------g~~i-------~-~~~~~~~~~-----~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .++|.|...+.  ....+.|++.+       ...+       . ...+.....     .+.+|.|.+++.+      |+|
T Consensus        14 ~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~------DsG   87 (115)
T 2or7_A           14 PVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVG------DGG   87 (115)
T ss_dssp             CEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG------GCE
T ss_pred             CEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHH------HCE
Confidence            39999998753  35789999754       1111       1 011111111     1348999988766      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|.|.+.+..... ...+.|.
T Consensus        88 ~Y~C~v~~~~~~~-~~~v~L~  107 (115)
T 2or7_A           88 PYCCVVEIPGAFH-FVDYMLE  107 (115)
T ss_dssp             EEEEEECCTTSCE-EEEEEEE
T ss_pred             EEEEEEECCCcee-EEEEEEE
Confidence            9999998764433 4555555

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.26  E-value=3.6e-06  Score=56.45  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=41.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-Ce---Eee-c----------ccCceE-E---eeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NT---VIA-Y----------VKDLRI-A---LSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~---~i~-~----------~~~~~~-~---~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .++|.|...+.+.+.+.|++.+ |+   .+- .          .+..+. .   ..+ +|.|.++..+      |+|.|.
T Consensus        18 ~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~------Dsg~Y~   90 (112)
T 1fo0_B           18 AVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMS------QGRTLY   90 (112)
T ss_dssp             CEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCC------SCEEEE
T ss_pred             cEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHh------HCEEEE
Confidence            3999999988888999999753 32   111 0          010111 1   123 8999988766      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+.+.
T Consensus        91 C~~~~~   96 (112)
T 1fo0_B           91 CTCSAD   96 (112)
T ss_dssp             EEEESS
T ss_pred             EEEEcC
Confidence            999875

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.25  E-value=3.9e-06  Score=63.33  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             eceee-eecCceeEeeccccC-----cccCCceeeeEE---EeccCCCCCCCEEEEcCCCCCccCeEEEeeEecc-CCC-
Q psy5697           5 HISTL-LADADTYIIADRSLF-----PRPLGYLVGNIV---YSSRSENEHYPFRIKSAPGGNRTRGLELTRQTRY-EPS-   73 (145)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~~-----p~~~~~~~~~~~---~~~~~~~~~~P~~i~~p~~~~~~g~~L~C~a~G~-P~P-   73 (145)
                      +|+.+ ..|.++|.|......     ...  ..+|..+   +........+|.+....     .++.|.|.+.|. |.| 
T Consensus        78 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~--~~~g~gt~L~V~~~~~~~~~P~v~~~~-----~~~~L~C~~~g~~P~~i  150 (229)
T 1hxm_A           78 KILAPSERDEGSYYCACDTLGMGGEYTDK--LIFGKGTRVTVEPRSQPHTKPSVFVMK-----NGTNVACLVKEFYPKDI  150 (229)
T ss_dssp             EESSCCGGGCEEEEEEEECCCCSSSCCCC--CEEBCCEEEEEECCSCCCBCCEEEEEE-----ETTEEEEEEESCBSSCC
T ss_pred             EECcCCHhHCeEEEEEEecCCCcccccch--hhcCccEEEEEeccCCCCcCCcEEEcC-----CCCeEEEEEEEEeCCCE
Confidence            34444 678889999875431     111  1222211   11111223456433321     136899999985 554 


Q ss_pred             EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          74 QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        74 ~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +|+|++ | +.+...........+|++.+.....     ..+.|.|.|.+.|..+..
T Consensus       151 ~v~W~~-~-~~~~~~~~~~~~~~dg~y~~~~~~~-----~~~~~~ytC~V~h~~~~~  200 (229)
T 1hxm_A          151 RINLVS-S-KKITEFDPAIVISPSGKYNAVKLGK-----YEDSNSVTCSVQHDNKTV  200 (229)
T ss_dssp             EEEEEC-S-SEEEECCCEEEECTTSSEEEEEEEE-----ETTTTTCEEEEEETTEEE
T ss_pred             EEEEec-C-CEEecCccceEECCCCcEEEEECcc-----cCCCCcEEEEEEeCCCCc
Confidence            899975 5 5665332222334567877764321     126899999999998754

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.25  E-value=2e-06  Score=57.82  Aligned_cols=61  Identities=15%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             CeEEEeeEecc-CCCEEEEEccC-CeE---eec-----------ccCceEEe---eCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSN-NTV---IAY-----------VKDLRIAL---SNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~d-g~~---i~~-----------~~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .++|.|.+.+. +.+.+.|++.+ |..   +..           .++.....   .++  +|.|.+++.+      |+|.
T Consensus        17 ~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~------DsG~   90 (116)
T 1tvd_A           17 EVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE------DSAT   90 (116)
T ss_dssp             CEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG------GCEE
T ss_pred             eEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCChH------HCEE
Confidence            39999999875 67889998743 221   110           01111221   233  7999888765      8999


Q ss_pred             EEEEEEcC
Q psy5697         119 YRCRASNE  126 (145)
Q Consensus       119 Y~C~A~N~  126 (145)
                      |.|.+.|.
T Consensus        91 Y~C~~~~~   98 (116)
T 1tvd_A           91 YYCAFTLP   98 (116)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEeCC
Confidence            99999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
            +  Y C+  +     +S+ V + 
Sbjct: 65  DAGRYWCQVEDGGETEISQPVWLT 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 115 HSTVYRCRASNEAGVILSRFVHVK 138
               Y+C A   AGV  SR +  +
Sbjct: 69  DEGHYQCFAETPAGVASSRVISFR 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.78
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.74
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.7
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.69
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.64
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.62
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.62
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.62
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.6
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.6
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.6
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.59
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.58
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.58
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.54
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.53
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.53
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.53
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.5
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.5
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.49
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.47
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.47
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.46
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.45
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.45
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.39
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.38
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.34
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.31
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.28
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.26
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.22
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.05
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.9
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.87
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.47
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.4
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.23
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.15
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.05
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.03
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.02
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.0
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.94
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.77
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.77
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.75
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.74
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.72
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.71
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.69
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.69
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.68
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.62
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.57
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.56
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.56
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.56
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.54
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.51
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.51
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.48
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.47
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.47
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.47
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.44
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.44
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.42
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.42
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.42
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.41
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.41
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.39
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.39
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.38
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.37
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.37
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.35
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.35
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.33
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.33
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.31
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.31
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.3
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.3
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.3
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.28
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.28
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.27
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.23
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.22
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.2
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.18
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.18
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.18
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.17
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.14
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.14
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.13
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.13
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.13
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.12
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.11
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.11
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.11
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.1
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.08
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.08
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.05
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.01
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.99
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.98
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	96.98
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.94
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.94
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.93
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.88
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.85
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.84
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.84
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.83
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.78
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.73
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.72
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.68
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.65
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.61
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.6
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.6
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.59
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.58
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.55
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.51
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.46
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.39
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.39
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.36
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.33
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.33
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.33
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.32
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.32
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.31
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.2
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.15
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.14
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.08
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.06
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.05
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.97
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	95.95
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.86
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	95.81
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	95.79
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.76
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.73
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.67
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	95.65
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.59
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.48
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.47
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.45
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.44
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	95.4
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.35
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.34
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.31
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	95.17
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.13
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.11
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	95.02
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.01
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	94.99
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.95
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.93
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.87
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.85
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.83
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	94.78
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.76
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	94.75
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.69
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.67
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	94.57
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.56
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	94.56
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.53
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	94.39
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.35
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.35
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.34
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.14
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	94.09
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.08
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	94.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.06
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.92
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.9
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.9
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	93.87
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.86
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	93.74
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.73
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.73
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	93.67
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	93.64
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	93.63
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	93.6
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	93.57
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.36
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	93.25
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.24
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.24
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.22
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	93.13
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.93
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	92.91
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.86
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.85
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	92.77
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	92.76
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.64
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	92.61
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.58
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.47
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	92.37
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.35
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.17
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	92.07
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.87
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	91.84
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	91.55
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	91.35
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	91.26
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	90.49
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	89.81
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	89.24
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	85.74
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	81.87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=3.1e-19  Score=116.62  Aligned_cols=85  Identities=21%  Similarity=0.263  Sum_probs=67.5

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.|++.|.+ ....  .+.|.|.+.|+|.|+|+|+ +||.++....  +....+++|.|.++..+      |+|.|+|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~-k~g~~i~~~~--~~~~~~~~L~i~~v~~~------D~G~Y~C~   71 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL-RDGQPLASQN--RIEVSGGELRFSKLVLE------DSGMYQCV   71 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE-ETTEECCCCS--SEEEETTEEEESSCCGG------GCEEEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEE-Eeeccccccc--eeeeeeeeEEEEeeccc------CCEEEEEE
Confidence            4789999988 2333  3999999999999999998 5888886543  34557889999988654      89999999


Q ss_pred             EEcCCCce-EEEEEEEEe
Q psy5697         123 ASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       123 A~N~~G~~-~s~~v~v~~  139 (145)
                      |+|.+|++ .+..+.|++
T Consensus        72 a~N~~G~~~~~~~l~V~A   89 (89)
T d1cs6a4          72 AENKHGTVYASAELTVQA   89 (89)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCEEEEEEEEEEEC
Confidence            99999998 444666653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=2.9e-19  Score=117.94  Aligned_cols=87  Identities=21%  Similarity=0.299  Sum_probs=66.2

Q ss_pred             CCCEEEEcCCCC-C--c---cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC-cEEEcCCCCCCCCCCCCCe
Q psy5697          45 HYPFRIKSAPGG-N--R---TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        45 ~~P~~i~~p~~~-~--~---~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G  117 (145)
                      .+|+|+++|.+. .  +   ..+.|.|.|.|.|+|.|+|+ +||..+......+....++ .|.|..+..+      |+|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~-~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~------d~G   75 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWK-MNGTELKMGPDSRYRLVAGDLVISNPVKAK------DAG   75 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEE-ETTEECCCSTTSSEEEETTEEEEESCCHHH------HCE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEE-EeeeeccCCCCceEEeeeeeEEEEeccccc------CCE
Confidence            468999999882 1  1   23899999999999999997 5888886554444555556 4555545433      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|+|+|+|.+|++.|+.++|+
T Consensus        76 ~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          76 SYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEe
Confidence            999999999999988877764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=3.7e-18  Score=112.54  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             CCEEEEcCCCC-Ccc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPGG-NRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~~-~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.|+..|.+. ...  .+.|.|.+.|+|.|+|+|++ ||..+....+......++  +|.|.++..+      |+|.|+
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~   73 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK-DDRELKQSVKYMKRYNGNDYGLTINRVKGD------DKGEYT   73 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEE-TTEECCSBTTBBCCCSTTEEEEEESCCCSG------GGSCEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEE-eeeccceeeEEEEEecCCeeEEEeCCCcee------cCEEEE
Confidence            48899999882 233  39999999999999999985 888887544332222333  6899887654      899999


Q ss_pred             EEEEcCCCce-EEEEEEEE
Q psy5697         121 CRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|+|.+|.. .+..+.|.
T Consensus        74 C~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          74 VRAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             EEEEETTEEEEEEECCEEE
T ss_pred             EEEEECCCEEEEEEEEEEe
Confidence            9999999997 44456665

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.74  E-value=6.5e-18  Score=111.51  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             CCCEEEEcCCC-CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPG-GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~-~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+|.|++.+.+ ...  ..+.|.|.+.|+|+|.|+|+ +||.++....+.... ..+|  +|.|.++..+      |+|.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~-k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~   75 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWY-KNGVKIERSDRIYWYWPEDNVCELVIRDVTGE------DSAS   75 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEE-ETTEECCCCSSEEEEEEETTEEEEEECSCCGG------GCEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEE-eCceEEeeeeeeEEEeccceEEEEEeccCccc------cCEE
Confidence            47889999887 222  33999999999999999998 488888765443333 3445  7999888655      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|.|+|.+|.+ .+..+.|+
T Consensus        76 Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          76 IMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCcEEEEEEEEEEE
Confidence            999999999998 34455554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=5.7e-18  Score=110.35  Aligned_cols=75  Identities=17%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             CCEEEEcCCC--CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG--GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~--~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +|.|+..|+.  ....|  +.|.|.+.|+|+|+|+|+ +||.++...   +....+++|.|.++..+      |+|.|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~-~~~~~i~~~---~~~~~~~~L~i~~v~~~------d~G~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS-HNAKPLSGG---RATVTDSGLVIKGVKNG------DKGYYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEE-ETTEECCSS---SEEEETTEEEESSCCST------TCEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEE-eCCccCccc---cEEEeeeeEEECCCChh------hCEEEEE
Confidence            5788888876  22333  999999999999999997 488888532   34445778999988655      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|+|.+|..
T Consensus        72 ~a~N~~G~~   80 (89)
T d1biha4          72 RATNEHGDK   80 (89)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCCEE
Confidence            999999987

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=1.4e-17  Score=110.65  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=66.6

Q ss_pred             CCCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe-eCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL-SNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~-~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+|.|++.|.+ ..  +..+.|.|.+.|+|.|.|+|+ +||..+....+..... .+|  +|.|.++..+      |+|.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~-k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~   79 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF-KDDNPVKESRHFQIDYDEEGNCSLTISEVCGD------DDAK   79 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEE-ETTEECCCSSSEEEEECTTCEEEEEESSCCGG------GCEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEE-eeeccccceeeEeEEEecCceeeeEecCCCHH------hCEE
Confidence            47899999988 22  233999999999999999998 5888887655443332 333  6999888655      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      |+|.|+|.+|.. .+..+.|+
T Consensus        80 Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          80 YTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCcEEEEEEEEEEE
Confidence            999999999998 44456654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=4e-18  Score=111.51  Aligned_cols=87  Identities=17%  Similarity=0.276  Sum_probs=67.6

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCC-EEEEEccCCeEeecccCce-EEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLR-IALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~-~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .|.|..+|.+ ..  +..+.|.|.+.|.|.| .|+|+ +||..+....... ....+++|.|.++..+      |+|.|+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~-~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~   74 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWK-KDGKSYNWQEHNAALRKDEGSLVFLRPQAS------DEGHYQ   74 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEE-ESSSBCCTTTTTEEECTTSCCEEESSCCGG------GCEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEE-eeeeeeeeecceeeecccceEEEEeccChh------cCeEEE
Confidence            5888888876 22  2339999999999976 79997 5888876443333 3345679999988655      899999


Q ss_pred             EEEEcCCCceEEEEEEEEe
Q psy5697         121 CRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       121 C~A~N~~G~~~s~~v~v~~  139 (145)
                      |+|+|.+|++.|+.+.|+.
T Consensus        75 C~a~N~~G~~~s~~v~l~~   93 (94)
T d1biha1          75 CFAETPAGVASSRVISFRK   93 (94)
T ss_dssp             EEEEETTEEEECCCEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEEE
Confidence            9999999998888887763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=6.3e-18  Score=110.38  Aligned_cols=84  Identities=15%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             CCCEEEEc-CCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          45 HYPFRIKS-APG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        45 ~~P~~i~~-p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+|.|... |.+ ....  .+.|+|.+.|+|.|.|+|++.|+...     ......+++|.|.++..+      |+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~-----~~~~~~~~~L~I~~v~~~------D~G~Y~   71 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT-----SKWLSSEPLLHIQNVDFE------DEGTYE   71 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCS-----CCCSBSSSEEEECSCCGG------GCEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccc-----eEeeeeeeEEEeCCCCcc------CCEEEE
Confidence            35666654 444 2223  39999999999999999987565332     123345779999988765      899999


Q ss_pred             EEEEcCCCce-EEEEEEEEe
Q psy5697         121 CRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v~~  139 (145)
                      |.|+|.+|+. .+..+.|.+
T Consensus        72 C~a~N~~G~~~~~~~l~V~A   91 (91)
T d1cs6a3          72 CEAENIKGRDTYQGRIIIHA   91 (91)
T ss_dssp             EEEEETTEEEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEEEC
Confidence            9999999997 444565543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=109.05  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=66.7

Q ss_pred             CEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEee-CC-cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          47 PFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS-NG-SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        47 P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~-~G-sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      |.|++.|.+ ..  +..+.|+|.+.|.|.|+|+|++ ||..+....+.+.... ++ +|.|.++..+      |+|.|+|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k-~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C   73 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGSKLTILAARQE------HCGCYTL   73 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEE-SSSBCCCSSSEEEEECSSEEEEEETTCCTT------TCEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEe-CceeeccCCcEEEEEecceeEEEEeeCCcc------cCEEEEE
Confidence            567777776 22  2339999999999999999985 7788765544433322 23 6999887665      8999999


Q ss_pred             EEEcCCCce-EEEEEEEEeccCCC
Q psy5697         122 RASNEAGVI-LSRFVHVKADSRIP  144 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~~~~~~p  144 (145)
                      .|+|.+|.. .+..+.|...+.-|
T Consensus        74 ~a~N~~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          74 LVENKLGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             EEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEECCCEEEEEEEEEEEecCCCc
Confidence            999999998 55577777544433

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.8e-17  Score=106.88  Aligned_cols=86  Identities=17%  Similarity=0.156  Sum_probs=65.2

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccC-ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKD-LRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      ++.|...|.+ ....  .+.|.|.+.|.|.|.|+|++ +|..+..... ......+++|.|.++..+      |+|.|+|
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~-~~~~i~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C   73 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVRFIVLSNNYLQIRGIKKT------DEGTYRC   73 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEE-TTEEGGGGCCTTEEECTTSCEEETTCCGG------GCEEEEE
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEE-cCcccccccceeeeeeeeeeEEECCCCHH------hCEEEEE
Confidence            3678888887 3333  39999999999999999985 6677654332 345566789999988765      8999999


Q ss_pred             EEEcCCCce-EEEEEEEE
Q psy5697         122 RASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       122 ~A~N~~G~~-~s~~v~v~  138 (145)
                      .|+|..|.. ....+.|.
T Consensus        74 ~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          74 EGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEEGGGTEEEEEEEEEE
T ss_pred             EEEECcCCEEEEEEEEEE
Confidence            999987765 55566653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-17  Score=106.08  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             CEEEEcCCC-CCcc--CeEEEeeEeccCCC-EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          47 PFRIKSAPG-GNRT--RGLELTRQTRYEPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        47 P~~i~~p~~-~~~~--g~~L~C~a~G~P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      |.|+.+|.+ ....  .+.|.|.|.|+|.| +|+|+ +||..+....       .+.+.|.....+      |+|.|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~-k~g~~i~~~~-------~~~~~l~~~~~~------d~G~Y~C~   67 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW-RGTTKIGGPA-------PSPSVLNVTGVT------QSTMFSCE   67 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEE-ETTEECSCSE-------ESSEEEEECCCS------SCEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEE-ECCEECCCCC-------CcceEEecCCcc------ccEEEEEE
Confidence            789999988 2333  39999999999999 99998 5888875322       122333322222      89999999


Q ss_pred             EEcCCCceEEEEEEEE
Q psy5697         123 ASNEAGVILSRFVHVK  138 (145)
Q Consensus       123 A~N~~G~~~s~~v~v~  138 (145)
                      |+|.+|...|+.++|.
T Consensus        68 A~N~~G~~~S~~~~v~   83 (85)
T d1rhfa2          68 AHNLKGLASSRTATVH   83 (85)
T ss_dssp             EEETTEEEECCCEEEE
T ss_pred             EEcCCCcEEEEEEEEE
Confidence            9999998887766654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=5.3e-17  Score=106.07  Aligned_cols=85  Identities=16%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.|+..+.+ ..  +..+.|.|.+.|+|.|+++|++ ||..+............+  +|.|.++..+      |+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~   74 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSSTTSIFFPSAKRA------DSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEEC-SSSSCBCSTTSEEEEETTEEEEECTTBCGG------GCEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEe-eeeeceeeeeeeecccccceeecccccccc------ccEEEE
Confidence            6888877766 22  3338999999999999999985 777776544443333333  7999888665      899999


Q ss_pred             EEEEcCCCce-EEEEEEE
Q psy5697         121 CRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v  137 (145)
                      |.|+|.+|+. .+..+.|
T Consensus        75 c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          75 LKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            9999999997 3334444

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=7.8e-17  Score=106.45  Aligned_cols=85  Identities=15%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             CCEEEEcCCC---CCccC--eEEEeeEeccCCCEEEEEccCCeEeeccc--CceEE--eeCCcEEEcCCCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPG---GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVK--DLRIA--LSNGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        46 ~P~~i~~p~~---~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~--~~~~~--~~~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ||.|...+..   +...|  +.|.|.+.|+|.|.|+|++ ||..+....  .....  ..+++|.|.++..+      |+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~-~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~   75 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDDEKHIFSDDSSELTIRNVDKN------DE   75 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE-TTEECCCC--CCSSEEECTTSCEEEECSCCGG------GC
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEe-CCcccccccccceeEEeecCceEEEeCCCCcc------cC
Confidence            6777666553   22333  8999999999999999984 888875322  11222  23458999988765      89


Q ss_pred             eEEEEEEEcCCCceE-EEEEEE
Q psy5697         117 TVYRCRASNEAGVIL-SRFVHV  137 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~-s~~v~v  137 (145)
                      |.|+|.|+|.+|+.. +..+.|
T Consensus        76 G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          76 AEYVCIAENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEE
Confidence            999999999999973 334444

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.66  E-value=8.8e-17  Score=105.97  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc---eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL---RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~---~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.+.|+|.|+|+|+ +||.++......   ......++|.|.++..+      |+|.|+|.|+|.+|++
T Consensus        23 v~l~C~~~g~P~p~i~W~-kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~G~~   88 (97)
T d3dara1          23 VKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS------DKGNYTCVVENEYGSI   88 (97)
T ss_dssp             EEEECCEEEESCCEEEEE-ETTEECCGGGSTTCCEEEGGGTEEEECSCCGG------GCEEEEEEEEETTEEE
T ss_pred             EEEEEEEeEECCCEEEEE-ECCEeccccCceeeEEEcCCcEEEEECCCCcc------cCEEEEEEEEECCCEE
Confidence            899999999999999998 588888644322   22334568999988655      8999999999999986

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=3.7e-17  Score=106.53  Aligned_cols=75  Identities=7%  Similarity=0.067  Sum_probs=56.0

Q ss_pred             EEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe--eCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          49 RIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL--SNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        49 ~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~--~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      |+..|.+ ....  .+.|.|.+.|+|.|+|+|+ +||.++..........  ..++|.|.++..+      |+|.|+|.|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~-~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~------D~G~Y~C~a   74 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWL-RKGQVLSTSARHQVTTTKYKSTFEISSVQAS------DEGNYSVVV   74 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEE-SSSSTTCSSSSCEEEECSSEEEEECSSCCSC------CCEEEEEEC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEE-EeecccccccceeeeeecceeEEeecCCCHH------HCEEEEEEE
Confidence            4455665 2333  3899999999999999997 5787776544333332  2348999887655      899999999


Q ss_pred             EcCCCce
Q psy5697         124 SNEAGVI  130 (145)
Q Consensus       124 ~N~~G~~  130 (145)
                      +|.+|+.
T Consensus        75 ~N~~G~~   81 (91)
T d1tnna_          75 ENSEGKQ   81 (91)
T ss_dssp             BCSSCBC
T ss_pred             EECCCEE
Confidence            9999997

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=106.49  Aligned_cols=89  Identities=17%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CCCEEEEcCCC-CC--ccCeEEEeeEeccC-CCEEEEEccCCeEeecccCce-EEeeCC-----cEEEcCCCCCCCCCCC
Q psy5697          45 HYPFRIKSAPG-GN--RTRGLELTRQTRYE-PSQLGWRFSNNTVIAYVKDLR-IALSNG-----SLMFPPFPETGFRPDV  114 (145)
Q Consensus        45 ~~P~~i~~p~~-~~--~~g~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~~~~-~~~~~G-----sL~i~~~~~~~~~~~~  114 (145)
                      ..|.|++.|++ +.  +..+.|.|.+.|.| .|.|+|++.++.......... ....++     +|.|.++..+      
T Consensus         2 ~~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------   75 (104)
T d2aw2a1           2 DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN------   75 (104)
T ss_dssp             CCEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGG------
T ss_pred             CccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHH------
Confidence            34566676665 22  33499999999999 599999864433322222222 222222     4888887655      


Q ss_pred             CCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697         115 HSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      |+|.|+|.|+|..|.+.+..+.|..
T Consensus        76 D~G~Y~C~A~N~~G~~~s~~~~l~V  100 (104)
T d2aw2a1          76 DNGSYRCSANFQSNLIESHSTTLYV  100 (104)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             HCCeEEEEEEcCCCeEEEEEEEEEE
Confidence            8999999999999998665555543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=101.89  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=55.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC----CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN----GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~----GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                      .+.|.|.+.|.|+|.|+|+ +||..+...........+    ++|.|.++..+      |+|.|+|.|+|..|+..|..+
T Consensus        13 ~~~l~C~v~g~p~p~v~W~-k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~S~~~   85 (91)
T d1rhfa1          13 PVKLNCSVEGMEEPDIQWV-KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS------DAGRYWCQVEDGGETEISQPV   85 (91)
T ss_dssp             CEEEEEEEESCSSCCEEEE-ETTEECCSSEEEEEEEETTEEEEEEEESSCCGG------GCEEEEEEESSCTTCEECCCE
T ss_pred             eEEEEEEEEecCCceEEEE-EeecccccceeeeeeecccCceeeEEECCCCcc------cCEEEEEEEEECCCCEEEEEE
Confidence            3999999999999999997 588887644322222222    36889887655      899999999999999887766


Q ss_pred             EEE
Q psy5697         136 HVK  138 (145)
Q Consensus       136 ~v~  138 (145)
                      +|.
T Consensus        86 ~l~   88 (91)
T d1rhfa1          86 WLT   88 (91)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7e-17  Score=105.38  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCe-EEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHST-VYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G-~Y~C  121 (145)
                      .|.|...+++ ....|  +.|.|.+.|.|+|+|+|++ +|..+...........+++|.|.++..+      |+| .|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~------d~G~~Y~C   74 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWIL-TELEQSATVMKSGGLPSLGLTLANVTSD------LNRKNVTC   74 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEE-SCCCSSEEECCCCCSSEEEEEEESCCST------TTTCCEEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEE-CCceeeeeeeeeeeccceeEEEcccccc------ccceEEEE
Confidence            4888888887 34444  9999999999999999986 5555432211122234458999988665      788 7999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|+|.+|+.
T Consensus        75 ~a~N~~G~~   83 (92)
T d2ifga1          75 WAENDVGRA   83 (92)
T ss_dssp             CCEETTEEC
T ss_pred             EEEcCCCEE
Confidence            999999997

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-15  Score=97.32  Aligned_cols=66  Identities=9%  Similarity=-0.005  Sum_probs=51.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKA  139 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~  139 (145)
                      +.|.|.+.|.|+|+|+|++.++.         ....+++|.|.++..+      |+|.|+|.|+|..|+. ....+.|.+
T Consensus        17 ~~L~C~~~g~p~P~i~W~~~~~~---------~~~~~~~l~i~~v~~~------DsG~Y~C~a~N~~g~~~~~~~v~V~~   81 (84)
T d2nxyb2          17 LTLTLESPPGSSPSVQCRSPRGK---------NIQGGKTLSVSQLELQ------DSGTWTCTVLQNQKKVEFKIDIVVLA   81 (84)
T ss_dssp             EEEEEECCTTCCCEEEEECTTCC---------EEEESSEEEESSCCGG------GCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred             EEEEEEeEcCCchheEEEeeccc---------ceeeeeeeeeeecccc------cccEEEEEEEeCCCEEEEEEEEEEEe
Confidence            99999999999999999864432         2234568899888655      8999999999999998 444666665


Q ss_pred             cc
Q psy5697         140 DS  141 (145)
Q Consensus       140 ~~  141 (145)
                      .+
T Consensus        82 ~~   83 (84)
T d2nxyb2          82 FQ   83 (84)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.2e-15  Score=98.04  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=55.4

Q ss_pred             CeEEEeeEeccCC-CEEEEEccCCeEeecccCceE-E-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEE
Q psy5697          60 RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRI-A-LSN--GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRF  134 (145)
Q Consensus        60 g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~-~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~  134 (145)
                      .+.|.|.+.|.|+ |+|+|++.||..+........ . ...  ++|.|.++..+      |+|.|+|.|+|..|...+..
T Consensus        17 ~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~~~t   90 (97)
T d1epfa1          17 SKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID------DAGIYKCVVTAEDGTQSEAT   90 (97)
T ss_dssp             CEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGG------GCEEEEEEEEETTTEEEEEE
T ss_pred             cEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchh------hceEEEEEEEeCCCcEEEEE
Confidence            3999999999995 899999778877654332222 2 222  37999988655      89999999999999876666


Q ss_pred             EEEEe
Q psy5697         135 VHVKA  139 (145)
Q Consensus       135 v~v~~  139 (145)
                      +.|..
T Consensus        91 v~l~V   95 (97)
T d1epfa1          91 VNVKI   95 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.4e-15  Score=98.23  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             CCEEEEcCCC--CC--ccCeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPG--GN--RTRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~--~~--~~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.+++.|+.  ..  ++.+.|.|.+. |.|.|+|+|++.| .++.   .......+++|.|.++..+      |+|.|+
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~-~~~~---~~~~~~~~~~L~i~~v~~~------D~G~Y~   71 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLD-TSLG---AVQSDTGRSVLTVRNASLS------AAGTRV   71 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESST-TTTC---CEEEESSEEEEEECSCCGG------GCEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEee-eeee---eeeccCceeeEEcCccChh------hCCcEE
Confidence            5777887766  22  33499999984 9999999998644 3332   1223334458999998766      899999


Q ss_pred             EEEEcCCCce-EEEEEEE
Q psy5697         121 CRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v  137 (145)
                      |+|+|..|+. .+..+.|
T Consensus        72 C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          72 CVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEEEE
Confidence            9999999986 3434443

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-15  Score=101.63  Aligned_cols=86  Identities=17%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccCCeEeecccCceE-EeeC-----CcEEEcCCCCCCCCCCCCCeE
Q psy5697          45 HYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-ALSN-----GSLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-~~~~-----GsL~i~~~~~~~~~~~~d~G~  118 (145)
                      .||.++...+........+.|.+.|+|+|+|+|+ +||+++........ ...+     ++|.|.++..+      |+|.
T Consensus         4 ~PP~i~~~~~~~~~~~~~i~~~v~G~P~P~v~W~-~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~   76 (105)
T d1wwca_           4 YPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWL-HNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY------NNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCCCCEEEEEEEEECSSCCEEEEE-ETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGG------GCEE
T ss_pred             cCCeeEEeCCCEEEEEEEEEEEEEEeCCCeEEEE-eCccccCCCcceeeeEEeecccceEEEEEeecccc------cceE
Confidence            4566554333222233678899999999999998 48888865433322 1122     35889877654      8999


Q ss_pred             EEEEEEcCCCce-EEEEEEE
Q psy5697         119 YRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       119 Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      |+|+|+|.+|+. .+..+.|
T Consensus        77 Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          77 YTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             EEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEcCCCEEEEEEEEEE
Confidence            999999999988 3334443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.60  E-value=3.2e-15  Score=99.22  Aligned_cols=87  Identities=13%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             CCCCEEEEc-CCC-CCcc--CeEEEeeEeccCCCEEEEEccCCeE----eeccc-------CceEE----eeCCcEEEcC
Q psy5697          44 EHYPFRIKS-APG-GNRT--RGLELTRQTRYEPSQLGWRFSNNTV----IAYVK-------DLRIA----LSNGSLMFPP  104 (145)
Q Consensus        44 ~~~P~~i~~-p~~-~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~----i~~~~-------~~~~~----~~~GsL~i~~  104 (145)
                      .++|.|... |++ ++..  .+.|.|.+.|+|.|+|+|++. +..    +....       .....    ...++|.|.+
T Consensus         2 ~~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   80 (109)
T d2fdbp2           2 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH-VEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN   80 (109)
T ss_dssp             CSCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEE-C-------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred             CCCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEec-CccCCceeccCCceeEeecccceeEEecCCcEEEEECC
Confidence            457888765 566 3333  399999999999999999863 222    11000       00111    1234799988


Q ss_pred             CCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy5697         105 FPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHV  137 (145)
Q Consensus       105 ~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v  137 (145)
                      +..+      |+|.|+|.|+|.+|.. .+..+.|
T Consensus        81 ~~~~------D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          81 VTFE------DAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             CCGG------GCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCHH------HCeEEEEEEEECCCEEEEEEEEEE
Confidence            7655      8999999999999998 3434443

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=97.79  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                      .+.|.|.+.|.|+|.|+|++.++.....  ........++|.|.++..+      |+|.|+|.|+|..|+. .+..+.|.
T Consensus        18 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          18 SVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFG------NEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             CEEEEEEEESCSSCEEEEEETTCCCCSS--EEEEETTEEEEEESSCCGG------GCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeccCCCCceEEEEecCccceee--eeeeecCCcEEEEeccccc------ccceEEEEEEeCCCEEEEEEEEEEE
Confidence            3999999999999999998655443221  1122233458999988765      8999999999999986 33455443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=100.72  Aligned_cols=72  Identities=17%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEE--e-----eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA--L-----SNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LS  132 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~--~-----~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s  132 (145)
                      ..+.|.+.|+|+|+|+|+ +||..+.........  .     ..++|.|.++..+      |+|.|+|.|+|.+|+. .+
T Consensus        19 ~~i~~~v~G~P~P~i~W~-~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          19 WCIPFTVKGNPKPALQWF-YNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM------NNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             EEEEEEEECSSCCEEEEE-ETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGG------GCEEEEEEEECSSCEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEE-ECCEEeeeeeeeeeeecccccccceEEEEECCCCHH------hCceEEEEEeccCCEEEEE
Confidence            678999999999999997 488888654322211  1     1236999887655      8999999999999998 33


Q ss_pred             EEEEEEe
Q psy5697         133 RFVHVKA  139 (145)
Q Consensus       133 ~~v~v~~  139 (145)
                      ..+.|..
T Consensus        92 ~~v~V~~   98 (103)
T d1wwbx_          92 ISAHFMG   98 (103)
T ss_dssp             EEECCSC
T ss_pred             EEEEEEe
Confidence            3444443

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=5.1e-15  Score=97.30  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=55.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEE----eeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFV  135 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v  135 (145)
                      .+.|.|.+.|+|+|+|+|++ ||..+...+..+..    ....+|.|.++..+      |+|.|+|.|+|.+|...+..+
T Consensus        20 ~v~l~C~~~g~P~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~C~a~N~~G~~~s~s~   92 (97)
T d1biha3          20 VTMIYCMYGSNPMGYPNYFK-NGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE------DEGVYTCEVDNGVGKPQKHSL   92 (97)
T ss_dssp             CEEEEEEEECSSCCCCEEEE-TTEECCCCTTSSEESCSSSTTSEEEESSCCGG------GCEEEEEEECCSSSSCEEEEE
T ss_pred             eEEEEEEEEEecCCEEEEEE-eeeeccccceeeeeeeeecCCCEEEEEecccc------ccEEEEEEEEECCCcEEEEEE
Confidence            39999999999999999984 78887644333222    22348999888765      899999999999999876666


Q ss_pred             EEE
Q psy5697         136 HVK  138 (145)
Q Consensus       136 ~v~  138 (145)
                      .|.
T Consensus        93 ~L~   95 (97)
T d1biha3          93 KLT   95 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.8e-15  Score=99.06  Aligned_cols=85  Identities=11%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             CCEEEEcCCC-CCcc--CeEEEeeEeccCCCEEEEEc--cCCeEeecccCceEEe---eCCcEEEcCCCCCCCCCCCCCe
Q psy5697          46 YPFRIKSAPG-GNRT--RGLELTRQTRYEPSQLGWRF--SNNTVIAYVKDLRIAL---SNGSLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~--g~~L~C~a~G~P~P~i~W~~--~dg~~i~~~~~~~~~~---~~GsL~i~~~~~~~~~~~~d~G  117 (145)
                      .|.|++ +.+ .+..  .+.|+|.+.|.|.|.+.|.+  +++..+.... .....   ..++|.|.++..+      |+|
T Consensus         2 ~P~f~~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~------D~G   73 (96)
T d2c9aa1           2 TPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTSSRRFIASFNVVNTTKR------DAG   73 (96)
T ss_dssp             SCEECC-CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEE-EEEEETTEEEEEEEECSCCGG------GCS
T ss_pred             cCeecc-cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCc-eeEEEeecCceEEEECCCCHH------HCe
Confidence            688874 777 2333  39999999999988766532  3333332211 12222   2357999888665      899


Q ss_pred             EEEEEEEcCCCceEEEEEEEE
Q psy5697         118 VYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       118 ~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .|+|+|+|.+|+..|..++|.
T Consensus        74 ~Y~C~a~N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          74 KYRCMIRTEGGVGISNYAELV   94 (96)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCeEEEEEEEEE
Confidence            999999999999877765554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.8e-15  Score=94.71  Aligned_cols=73  Identities=14%  Similarity=0.091  Sum_probs=53.7

Q ss_pred             EEEEcCCC-CC--ccCeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          48 FRIKSAPG-GN--RTRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        48 ~~i~~p~~-~~--~~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      ++++.|.+ ..  +..+.|.|.+. |.|+|+|+|++ +|..+...   +....+++|.|.++..+      |+|.|+|.|
T Consensus         4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k-~~~~~~~~---~~~~~~~~L~i~~v~~~------d~G~Y~C~a   73 (89)
T d1gl4b_           4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTR-LHNGKLPS---RAMDFNGILTIRNVQPS------DAGTYVCTG   73 (89)
T ss_dssp             EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEE-GGGBCCCT---TEEEETTEEEECSCCGG------GCEEEEEEE
T ss_pred             EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEec-CCceeecc---ccEeeceEEEEecCCcc------cCEEEEEEE
Confidence            34444544 22  33499999996 78999999986 55544322   24456889999988765      899999999


Q ss_pred             EcCCCce
Q psy5697         124 SNEAGVI  130 (145)
Q Consensus       124 ~N~~G~~  130 (145)
                      +|.+|..
T Consensus        74 ~N~~G~~   80 (89)
T d1gl4b_          74 SNMFAMD   80 (89)
T ss_dssp             ECSSCEE
T ss_pred             EECCCEE
Confidence            9999987

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9e-15  Score=97.84  Aligned_cols=85  Identities=12%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             CEEEEcCCC-CCccC--eEEEeeEeccC---CCEEEEEccCCeE-eecccCceEE----e------eCCcEEEcCCCCCC
Q psy5697          47 PFRIKSAPG-GNRTR--GLELTRQTRYE---PSQLGWRFSNNTV-IAYVKDLRIA----L------SNGSLMFPPFPETG  109 (145)
Q Consensus        47 P~~i~~p~~-~~~~g--~~L~C~a~G~P---~P~i~W~~~dg~~-i~~~~~~~~~----~------~~GsL~i~~~~~~~  109 (145)
                      |+|++.|.+ +...|  +.|.|.+.|.|   .|+|+|++ ++.. +....+.+..    .      ...+|.|.+++.+ 
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-   82 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA-   82 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEEC-STTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT-
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEe-CceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH-
Confidence            688999988 33334  99999999999   68999985 4432 2211111110    1      1236999988765 


Q ss_pred             CCCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         110 FRPDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                           |+|.|+|.|+|..|.. .+..+.|+
T Consensus        83 -----D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          83 -----FTGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             -----CCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -----HCcEEEEEEEECCCeEEEEEEEEEE
Confidence                 8999999999999998 44455554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4e-15  Score=99.93  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=56.9

Q ss_pred             EEEEcCCC-CCcc--CeEEEeeEeccC---CCEEEEEccCCeEeecccCc--eE--Eee------CCcEEEcCCCCCCCC
Q psy5697          48 FRIKSAPG-GNRT--RGLELTRQTRYE---PSQLGWRFSNNTVIAYVKDL--RI--ALS------NGSLMFPPFPETGFR  111 (145)
Q Consensus        48 ~~i~~p~~-~~~~--g~~L~C~a~G~P---~P~i~W~~~dg~~i~~~~~~--~~--~~~------~GsL~i~~~~~~~~~  111 (145)
                      +|++.|.+ ++..  .+.|.|.+.|.|   .|+|.|++.+...+....+.  ..  ...      ..+|.|.++..+   
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~---   78 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN---   78 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT---
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHH---
Confidence            36677777 2333  399999999999   68999986433222211111  10  111      125999888765   


Q ss_pred             CCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         112 PDVHSTVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       112 ~~~d~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                         |+|.|+|.|+|..|.. .+..+.|.
T Consensus        79 ---D~G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          79 ---FAGNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             ---SCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             ---HCeEEEEEEEeCCCEEEEEEEEEEE
Confidence               8999999999999997 44467776

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.6e-14  Score=95.08  Aligned_cols=73  Identities=16%  Similarity=0.308  Sum_probs=54.4

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeec---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|.|.|.|.|++.++.....         .-..+....+++|.|.++..+      |+|.|+|.|+|..|..
T Consensus        18 ~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~------D~G~Y~C~a~n~~g~~   91 (102)
T d1f97a1          18 SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK------DNGEYTCMVSEEGGQN   91 (102)
T ss_dssp             CEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGG------GCEEEEEEEEETTSSS
T ss_pred             EEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCcc------CCEEEEEEEEECCCCE
Confidence            3999999999999999998755443221         001234456789999988765      8999999999999997


Q ss_pred             -EEEEEEEE
Q psy5697         131 -LSRFVHVK  138 (145)
Q Consensus       131 -~s~~v~v~  138 (145)
                       .+..++|.
T Consensus        92 ~~~~~v~v~  100 (102)
T d1f97a1          92 YGEVSIHLT  100 (102)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence             44456554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.6e-14  Score=94.51  Aligned_cols=71  Identities=17%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+.|.|.+.| |+|.|+|++ ||..+...........+++|.|.++..+      |+|.|+|.|+|.+|...|..+.|.
T Consensus        20 ~v~l~C~~~~-~~~~v~W~~-~~~~l~~~~~~~~~~~~~~L~I~~v~~~------d~G~Y~C~a~N~~g~~~S~~~~L~   90 (96)
T d1l6za2          20 SVTLTCLSND-IGANIQWLF-NSQSLQLTERMTLSQNNSILRIDPIKRE------DAGEYQCEISNPVSVRRSNSIKLD   90 (96)
T ss_dssp             CEEEEECCCC-SSCEEEEEE-TTEECCCCTTEEEETTTTEEEECSCCGG------GCEEEEEEEESSSCCEECCCCEEE
T ss_pred             eEEEEEccCC-CCCCEEEEE-eeeecccccceeccCCceEEEEeccchh------hceEEEEEEEeCCCCeEEEeEEEE
Confidence            3999999977 678999974 8888875544444455668999888755      899999999999999877655554

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.2e-14  Score=96.88  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=54.3

Q ss_pred             cCeEEEeeEe-ccCCCEEEEEccCCeEeecccCc----------eEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          59 TRGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDL----------RIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        59 ~g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~----------~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ..+.|.|.+. |+|+|+|+|++ ||..+......          ......++|.|.++..+      |+|.|+|.|+|.+
T Consensus        18 ~~v~L~C~~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~N~~   90 (110)
T d1f97a2          18 NRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF------DSGEYYCQAQNGY   90 (110)
T ss_dssp             SCEEEEEECSCCBSCCEEEEEE-TTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGG------GCEEEEEEEECSS
T ss_pred             CeEEEEEEeecCCCCCEEEEEe-CCeEecCCCceeEEeecCceEEEeecccceEECCCCcc------CCEEEEEEEEECC
Confidence            3499999985 99999999985 77765422111          11223458999888665      8999999999999


Q ss_pred             Cce-EEEEEEEEecc
Q psy5697         128 GVI-LSRFVHVKADS  141 (145)
Q Consensus       128 G~~-~s~~v~v~~~~  141 (145)
                      |+. .+..+++...+
T Consensus        91 G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          91 GTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CcEEEEEEEEEEEEe
Confidence            988 45567666543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.6e-14  Score=93.84  Aligned_cols=87  Identities=13%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCC-EEEEEccCC---eEeecc-cCceEEe-eCC--cEEEcCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPS-QLGWRFSNN---TVIAYV-KDLRIAL-SNG--SLMFPPFPETGFRPDV  114 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P-~i~W~~~dg---~~i~~~-~~~~~~~-~~G--sL~i~~~~~~~~~~~~  114 (145)
                      ||.|...+.+ ....|  +.|.|.+.|+|+| .++|++.+.   ..+... .....+. ..+  +|.|.++..+     .
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-----~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME-----A   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT-----T
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccc-----c
Confidence            6777776665 22333  9999999999988 799986331   111111 1112222 222  7888876532     2


Q ss_pred             CCeEEEEEEEcCCCceE-EEEEEE
Q psy5697         115 HSTVYRCRASNEAGVIL-SRFVHV  137 (145)
Q Consensus       115 d~G~Y~C~A~N~~G~~~-s~~v~v  137 (145)
                      |+|.|+|.|+|.+|+.. +..+.|
T Consensus        77 D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEECCCEEEEEEEEEE
Confidence            89999999999999983 334443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=94.70  Aligned_cols=71  Identities=14%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeec---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.+.|+|.|+|+|++.++.....         ....+....+++|.|.++..+      |+|.|+|.|+|..|...
T Consensus        22 v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~G~~~   95 (105)
T d1nbqa1          22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE------DTGTYTCMVSEEGGNSY   95 (105)
T ss_dssp             CEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTT------SCSEEEEEEEETTSSCE
T ss_pred             EEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEeccccc------ceeeEEEEEEECCCCEE
Confidence            999999999999999998754322110         001123445678999988765      89999999999999985


Q ss_pred             EE-EEEE
Q psy5697         132 SR-FVHV  137 (145)
Q Consensus       132 s~-~v~v  137 (145)
                      .. .+.|
T Consensus        96 ~~~~v~v  102 (105)
T d1nbqa1          96 GEVKVKL  102 (105)
T ss_dssp             ECCEEEC
T ss_pred             EEEEEEE
Confidence            33 4544

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.7e-14  Score=93.14  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             CCEEEEcCCC--CCc--cCeEEEeeEeccCCCEEEEEccCCeEeecccCceE-----Ee---------eCCcEEEcCCCC
Q psy5697          46 YPFRIKSAPG--GNR--TRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI-----AL---------SNGSLMFPPFPE  107 (145)
Q Consensus        46 ~P~~i~~p~~--~~~--~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~-----~~---------~~GsL~i~~~~~  107 (145)
                      +|.++..+..  .+.  ..+.|.|.|.|+|.|.|+|+ .||..+........     ..         ...+|.|.++..
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   79 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK-WNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES   79 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEE-ETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEE-ECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence            4666665443  222  33999999999999999997 58887754332111     00         013699988876


Q ss_pred             CCCCCCCCCeE-EEEEEEcCCCceEEEEEEEE
Q psy5697         108 TGFRPDVHSTV-YRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       108 ~~~~~~~d~G~-Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +      |.|. |+|.|+|.+|.. +..+.|+
T Consensus        80 ~------D~g~~Y~C~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          80 R------FYKHPFTCFAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             G------GGSSCEEEEEECSSCEE-EEEEEEE
T ss_pred             H------HCCcEEEEEEEeCCCeE-EEEEEEE
Confidence            5      7995 999999999987 4455555

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=94.69  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             EEEeeEeccCCCEEEEEccCCeEeecccCceEEee---------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-E
Q psy5697          62 LELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS---------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-L  131 (145)
Q Consensus        62 ~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~---------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~  131 (145)
                      .+.|.+.|+|+|+|+|++ ||+++...........         .++|.|.++..+      |+|.|+|+|+|.+|+. .
T Consensus        19 ci~~~v~G~P~P~v~W~~-ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------D~G~Y~C~A~N~~G~~~~   91 (107)
T d1he7a_          19 CIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV------NNGNYTLLAANPFGQASA   91 (107)
T ss_dssp             EEEEEECCSSCCEEEEEE-TTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGG------GCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEecCCeEEEEE-eeeEccCccceeeeeeeeeeeeeccceEEEECcccHH------HCcEEEEEEEeCCCEEEE
Confidence            466799999999999984 8888864433322211         125888877654      8999999999999997 3


Q ss_pred             EEEEEEE
Q psy5697         132 SRFVHVK  138 (145)
Q Consensus       132 s~~v~v~  138 (145)
                      +..+.|.
T Consensus        92 ~i~v~v~   98 (107)
T d1he7a_          92 SIMAAFM   98 (107)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEE
Confidence            3344444

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-15  Score=99.12  Aligned_cols=75  Identities=23%  Similarity=0.372  Sum_probs=55.0

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeecccCce---------EEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVKDLR---------IALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~~~~---------~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.+ .|+|+|.|+|++ ||..+.......         .....+.|.|.++..+      |+|.|+|.|+|.+|+
T Consensus        19 ~v~l~C~~~~g~p~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~------D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          19 RAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS------DTGEYSCEARNGYGT   91 (104)
T ss_dssp             CEEECCCCCSCBSCCEEEEEE-TTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGG------GCCCEEEEEECSSSC
T ss_pred             cEEEEEEeecCCCCCEEEEEE-CCEEccCCCceeEEeeCCcEEEeecccceEECCCCcc------cCcEEEEEEEECCCc
Confidence            39999998 599999999985 776664322111         1123468999887655      899999999999999


Q ss_pred             e-EEEEEEEEecc
Q psy5697         130 I-LSRFVHVKADS  141 (145)
Q Consensus       130 ~-~s~~v~v~~~~  141 (145)
                      . .|..++|.+.|
T Consensus        92 ~~~s~~v~v~v~e  104 (104)
T d1nbqa2          92 PMTSNAVRMEAVE  104 (104)
T ss_dssp             CEECCCBCCEEEC
T ss_pred             eEEEEEEEEEEEC
Confidence            8 56677776543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=9.4e-14  Score=90.18  Aligned_cols=68  Identities=15%  Similarity=0.091  Sum_probs=53.1

Q ss_pred             CeEEEeeEe-ccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          60 RGLELTRQT-RYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~-G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+.|.|.+. |.|.++++|+ +||+.+..      ...++.|.|.++..+      |+|.|+|.|.|..|...|..+.|.
T Consensus        19 ~v~L~C~~~~~~p~~~~~W~-kng~~~~~------~~~~~~l~I~~v~~~------dsG~Y~C~a~n~~~~~~S~~v~it   85 (89)
T d1fnla2          19 PIHLRCHSWKNTALHKVTYL-QNGKDRKY------FHHNSDFHIPKATLK------DSGSYFCRGLVGSKNVSSETVNIT   85 (89)
T ss_dssp             CEEEEEEECTTCCCEEEEEE-ETTEEEEE------EEECCCEEESSCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eEEEEEEecCCCCCcEEEEE-Ecccccce------eccccccEECcccee------ccceEEEEEEeCCCCeEEeeEEEE
Confidence            399999997 5566789998 58877532      234678999888765      899999999999998877766666


Q ss_pred             ec
Q psy5697         139 AD  140 (145)
Q Consensus       139 ~~  140 (145)
                      .-
T Consensus        86 V~   87 (89)
T d1fnla2          86 IT   87 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=8.5e-14  Score=90.14  Aligned_cols=67  Identities=13%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             CeEEEeeEec-cCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+.|.|.+.| .|++++.|+ +||+.+..      ...+++|.|.++..+      |+|.|+|.|+|..|...|..+.|.
T Consensus        17 ~v~L~C~~~~~~p~~~~~W~-k~g~~~~~------~~~~~~l~i~~v~~~------dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2          17 TIVLRCHSWKDKPLVKVTFF-QNGKSKKF------SRSDPNFSIPQANHS------HSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             CEEEEEEEGGGCCCEEEEEE-ETTEEEEE------ESSCCEEEETTCCGG------GCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eEEEEEEecCCCCCcEEEEE-eecccccc------cccccccccCccCHH------HCCeEEEEEEeCCCCEEeeeEEEE
Confidence            3999999965 466799998 48877642      224668999888765      899999999999998877766655


Q ss_pred             e
Q psy5697         139 A  139 (145)
Q Consensus       139 ~  139 (145)
                      .
T Consensus        84 V   84 (88)
T d2fcba2          84 V   84 (88)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-14  Score=92.83  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|+|.+.| |+|.+.|.+ +|..+...........+|+|.|.++..+      |+|.|+|.|.|.+|..
T Consensus        15 ~~l~C~~~g-~~~~v~W~~-~g~~l~~~~~~~~~~~~~~L~I~~v~~~------DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          15 AELKCSQKS-NLARVFWKF-QNGVLKAESPKYGLMGRKNLLIFNLSEG------DSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEECCCCSC-TTCEEEEEE-SSSBCCCCSSSBCCTTTTCEEECSCCGG------GCEEEEEEEEEECSSS
T ss_pred             EEEEEEeec-cCCceeeec-CcccceeeeeeeecceeeEEEECCCCHH------HCcEEEEEEEEcCCCE
Confidence            999999999 889999975 6777654444445667889999998765      8999999999999965

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.7e-15  Score=95.12  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|.|.|+|.|+|+|++ ||..+..         .+.+  ..++.+      |+|.|+|+|+|.+|+. +..+.|.
T Consensus        22 ~~l~C~a~G~P~P~v~W~k-~g~~~~~---------~~~~--~~v~~~------d~G~Y~C~A~N~~G~~-~~~~~l~   80 (84)
T d2oz4a3          22 QTPMCQAWGNPLPELKCLK-DGTFPLP---------IGES--VTVTRD------LEGTYLCRARSTQGEV-TREVTVN   80 (84)
T ss_dssp             ECCCCCCEEESCCEEEEEE-TTTEECC---------TTSC--EECCGG------GCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             EEEEEEEeEcCccEEEEEE-eecccee---------eeee--eccccC------CCCEEEEEEEcCCCEE-EEEEEEE
Confidence            8999999999999999985 6655432         1221  123222      8999999999999987 3444443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.9e-14  Score=94.78  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=48.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeeccc-----------------------------CceEEeeCC--cEEEcCCCCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVK-----------------------------DLRIALSNG--SLMFPPFPET  108 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-----------------------------~~~~~~~~G--sL~i~~~~~~  108 (145)
                      .+.|.|.+.|+|.|+|+|++ ++..+....                             +.......+  +|.|.++..+
T Consensus        26 ~v~L~C~v~G~P~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (130)
T d1gxea_          26 KLRLDVPISGDPAPTVIWQK-AITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE  104 (130)
T ss_dssp             CCCCEEECCSBSCCEEEEEE-ECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTT
T ss_pred             eEEEEEEEEEecCCeEEEee-CCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECcCChh
Confidence            38999999999999999986 333321100                             011112222  6999888665


Q ss_pred             CCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697         109 GFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       109 ~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                            |+|.|+|.|+|.+|+. +..+.|.
T Consensus       105 ------D~G~Y~C~a~N~~G~~-~~~~~l~  127 (130)
T d1gxea_         105 ------DEGVYTVTVKNPVGED-QVNLTVK  127 (130)
T ss_dssp             ------TCEEEEEEEECSSCEE-EEEEEEE
T ss_pred             ------cCEEEEEEEEECCCEE-EEEEEEE
Confidence                  8999999999999996 3344444

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.2e-14  Score=92.91  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             cCeEEEe------eEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce--
Q psy5697          59 TRGLELT------RQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI--  130 (145)
Q Consensus        59 ~g~~L~C------~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~--  130 (145)
                      .+..|.|      .+.|+|+|.|+|+ +||.++.... .+....+++|.|.++..+      |+|.|+|.|+|..|..  
T Consensus        15 ~~~~l~Cp~~~~~~~~~~p~P~i~W~-kdg~~l~~~~-~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~g~~~   86 (103)
T d1iray2          15 GDGGLVCPYMEFFKNENNELPKLQWY-KDCKPLLLDN-IHFSGVKDRLIVMNVAEK------HRGNYTCHASYTYLGKQY   86 (103)
T ss_dssp             SCEEEECTTGGGGCBTTTBCCCCEEE-ETTEECCCCS-SSEEEETTEEEESSCCGG------GCEEEEEEEEEEETTEEE
T ss_pred             CCEEEEcCCccccccCCCCCCEEEEE-ECCccccCCC-cEEEecCCEEEEcccccc------cCcEEEEEEEECcCCEEE
Confidence            3488999      6889999999998 4999987543 346667889999988765      8999999999998753  


Q ss_pred             -EEEEEEEEecc
Q psy5697         131 -LSRFVHVKADS  141 (145)
Q Consensus       131 -~s~~v~v~~~~  141 (145)
                       +++.+.+...+
T Consensus        87 ~vt~~i~~~v~~   98 (103)
T d1iray2          87 PITRVIEFITLE   98 (103)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEECC
Confidence             35677776544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-14  Score=94.37  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=48.9

Q ss_pred             CeEEEeeEeccCC-CEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.|.|+ ++|+|+| ||.++... .......+++|.|.++..+      |+|.|+|.|.|..+..
T Consensus        23 ~v~L~C~~~g~~~~~~i~W~k-~~~~l~~~-~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~~t   86 (93)
T d1n26a1          23 SVTLTCPGVEPEDNATVHWVL-RKPAAGSH-PSRWAGMGRRLLLRSVQLH------DSGNYSCYRAGRPAGT   86 (93)
T ss_dssp             CEEEECTTSCTTCCSEEEEEE-ECSSSSCC-CEEEEEESSEEEECSCCGG------GCEEEEEESSSSCSCE
T ss_pred             cEEEEEEeecCCCCceEEEEE-ccccccce-eeEEecCCCEEEECCCChh------cCEEEEEEECCccccE
Confidence            3999999999876 5999986 66666533 2334556789999988765      8999999999986553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=1.2e-13  Score=91.99  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEeeccc--CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      .+.|.|.+ .|.|.|+|+|++ ||..+....  +......+|+|.|.++..+      |+|.|+|.|+|.+|+..
T Consensus        21 ~~~l~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          21 GVMFTCSPPPHYPALSYRWLL-NEFPNFIPADGRRFVSQTTGNLYIAKTEAS------DLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             CEEECCCCCSEESCCEEEEEE-SSTTCBCCCCSSEEECTTTCCEEESSCCGG------GCEEEEEEEEEEETTEE
T ss_pred             eEEEEEEccCCCCCCEEEEEE-eeccccccccceeeeecCCCEEeecccccc------cCcEEEEEEEECCCCEE
Confidence            39999997 799999999985 666544222  2223456889999988765      89999999999999863

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=2.5e-13  Score=91.64  Aligned_cols=67  Identities=16%  Similarity=0.063  Sum_probs=49.0

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeEeeccc------CceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTVIAYVK------DLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL  131 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~i~~~~------~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~  131 (145)
                      +.|.|.+ .|+|+|+++|++ +|..+....      .......+|+|.|.+++.+|.   .|.|.|.|.|+|.+|+..
T Consensus        20 ~~L~C~v~~G~P~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~---gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          20 FQLDCVLPNAYPKPLITWKK-RLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV---SDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             EEECCCCCEEESCCEEEEEE-EETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGC---CSSEEEEEEEECTTCSSC
T ss_pred             EEEEEEcccCCCCCEEEEEe-CCccccccccceeeeeeeccccccccEEeeeEeecc---CCceEEEEEEEeCCCCce
Confidence            9999997 899999999986 433332111      123455688999999876631   145689999999999883

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-13  Score=88.74  Aligned_cols=78  Identities=10%  Similarity=0.060  Sum_probs=54.5

Q ss_pred             CCCCEEEEcCCC--CCccC--eEEEeeEeccCCCEEEEEccCCeEeeccc-CceEEeeCC--cEEEcCCCCCCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG--GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVK-DLRIALSNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        44 ~~~P~~i~~p~~--~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~-~~~~~~~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      ..+|.|++..+.  .+..|  +.|.|.+.| |+|.|+|++ ||..+.... .......++  +|.|.++..+      |+
T Consensus         3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~------D~   74 (94)
T d1pd6a_           3 KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLK-NGQEIQMSGSKYIFESIGAKRTLTISQCSLA------DD   74 (94)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEE-SSSEECCCSSSSEEEEETTEEEEEECSCSSS------SC
T ss_pred             CCCCcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEE-cCccceeeeeeEeeeccCCeEEeecCCCCce------ec
Confidence            345666666554  22333  999999855 999999984 888876433 233444444  6999888765      89


Q ss_pred             eEEEEEEEcCCCc
Q psy5697         117 TVYRCRASNEAGV  129 (145)
Q Consensus       117 G~Y~C~A~N~~G~  129 (145)
                      |.|+|.|.|..++
T Consensus        75 G~Y~c~a~n~~~s   87 (94)
T d1pd6a_          75 AAYQCVVGGEKCS   87 (94)
T ss_dssp             EEEEEEETTEEEC
T ss_pred             EEEEEEEeeEEEE
Confidence            9999999886544

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-13  Score=86.08  Aligned_cols=76  Identities=9%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             EEcCCCCCccC--eEEEeeEecc-CCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          50 IKSAPGGNRTR--GLELTRQTRY-EPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        50 i~~p~~~~~~g--~~L~C~a~G~-P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++.|...+..|  +.|.|.+.|. |++++.|+ +||+.+...      ..+++|.|.++..+      |+|.|+|.|.|.
T Consensus         5 lq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~-k~g~~~~~~------~~~~~l~i~~~~~~------dsG~Y~C~a~n~   71 (89)
T d1f2qa2           5 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY-KDGEALKYW------YENHNISITNATVE------DSGTYYCTGKVW   71 (89)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCEEEEEEE-ETTEECCSC------CCSSEEEESSCCGG------GCEEEEEEEEET
T ss_pred             EeCCcCeEeCCCEEEEEEEecCCCCCeEEEEE-Eeeeccccc------cccceEEEeeeeee------cCcEEEEEEEeC
Confidence            34444433333  9999999776 55689997 588776432      13467999887665      899999999999


Q ss_pred             CCceEEEEEEEE
Q psy5697         127 AGVILSRFVHVK  138 (145)
Q Consensus       127 ~G~~~s~~v~v~  138 (145)
                      .|...|..+.|.
T Consensus        72 ~~~~~S~~v~i~   83 (89)
T d1f2qa2          72 QLDYESEPLNIT   83 (89)
T ss_dssp             TEEEECCCEEEE
T ss_pred             CCCeEeeeEEEE
Confidence            998777655554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=86.38  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             CeEEEeeE-eccCCCEEEEEccCCeEee--cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEE
Q psy5697          60 RGLELTRQ-TRYEPSQLGWRFSNNTVIA--YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFV  135 (145)
Q Consensus        60 g~~L~C~a-~G~P~P~i~W~~~dg~~i~--~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v  135 (145)
                      .+.|.|.+ .|.|.|+|+|++ +|..+.  .....+....+++|.|.++..+      |+|.|+|+|+|..|.. .+..+
T Consensus        19 ~~~l~C~~~~~~~~~~i~W~k-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~N~~g~~~~~~~L   91 (101)
T d1iray1          19 IDVRPCPLNPNEHKGTITWYK-DDSKTPVSTEQASRIHQHKEKLWFVPAKVE------DSGHYYCVVRNSSYCLRIKISA   91 (101)
T ss_dssp             CEEECCCCCGGGCSSEEEEEC-SSTTSBCCCCTTSSEEEETTEEEETTCCGG------GCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEeeCCCCCCCceEEEEE-CCcccccccccceEEeccCCEEEeccceec------CCEEEEEEEECCCCeEEEEEEE
Confidence            38999987 588999999986 544332  2223345566789999998766      8999999999999998 33344


Q ss_pred             EEE
Q psy5697         136 HVK  138 (145)
Q Consensus       136 ~v~  138 (145)
                      .|.
T Consensus        92 ~V~   94 (101)
T d1iray1          92 KFV   94 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=83.19  Aligned_cols=71  Identities=11%  Similarity=0.024  Sum_probs=54.4

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|++..+|++ +...|  ++|.|.+.|.|.|.+.|.++||..+..        .+.+|.|.++..+      |+|.|+|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~------d~G~Y~C~   70 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--------QASSYFIDAATVN------DSGEYRCQ   70 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--------SCSEEEESSCCGG------GCEEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee--------cceeeEecCCccc------CCEEEEEE
Confidence            5788888876 33334  999999999999987776678866532        3457999888665      89999999


Q ss_pred             EEcCCCce
Q psy5697         123 ASNEAGVI  130 (145)
Q Consensus       123 A~N~~G~~  130 (145)
                      |.|..++.
T Consensus        71 a~~s~~S~   78 (84)
T d1fnla1          71 TNLSTLSD   78 (84)
T ss_dssp             CSSSCCCC
T ss_pred             ccCCCccc
Confidence            99877653

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-13  Score=89.22  Aligned_cols=87  Identities=15%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             CCCCEEEEcCCC-CCccC--eEEEeeEeccC-CCEEEEEccCCeEeeccc-CceEE----eeCC---cEEEcCCCCCCCC
Q psy5697          44 EHYPFRIKSAPG-GNRTR--GLELTRQTRYE-PSQLGWRFSNNTVIAYVK-DLRIA----LSNG---SLMFPPFPETGFR  111 (145)
Q Consensus        44 ~~~P~~i~~p~~-~~~~g--~~L~C~a~G~P-~P~i~W~~~dg~~i~~~~-~~~~~----~~~G---sL~i~~~~~~~~~  111 (145)
                      ..||.+.. ++. ....|  +.|.|.+.|.| ++.+.|++ ++..+.... ....+    ..++   +|.|.++..+   
T Consensus         5 ~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~---   79 (115)
T d2crya1           5 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLESGTSGRYTVETISTEEGVISTLTISNIVRA---   79 (115)
T ss_dssp             CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEES-SSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH---
T ss_pred             ecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEee-eeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh---
Confidence            45676654 444 33333  89999999965 56899975 666665322 11111    2222   5888877654   


Q ss_pred             CCCC-CeEEEEEEEcCCCce-EEEEEEEE
Q psy5697         112 PDVH-STVYRCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       112 ~~~d-~G~Y~C~A~N~~G~~-~s~~v~v~  138 (145)
                         | .|.|+|.|+|.+|++ .+..+.|+
T Consensus        80 ---D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          80 ---DFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             ---HHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             ---cCCeEEEEEEEECCCeEEEEEEEEEE
Confidence               6 699999999999997 33344444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-12  Score=83.74  Aligned_cols=71  Identities=14%  Similarity=0.017  Sum_probs=49.8

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.|..+|+. ....|  +.|.|.+.|+|.|.+.|.++||..+..        .+++|.|.++..+      |+|.|+|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~v~~~------d~G~Y~C~   66 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------TNSSLNIVNAKFE------DSGEYKCQ   66 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------CSSEEEECSCCGG------GCEEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec--------ccceeEECCCChh------hCCcEEEE
Confidence            4666667765 33334  999999999999987775678776532        3457999888765      89999999


Q ss_pred             EEcCCCce
Q psy5697         123 ASNEAGVI  130 (145)
Q Consensus       123 A~N~~G~~  130 (145)
                      |.|..++.
T Consensus        67 a~~s~~S~   74 (82)
T d1f2qa1          67 HQQVNESE   74 (82)
T ss_dssp             CTTSSCCC
T ss_pred             ecCCCCcc
Confidence            99987765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.8e-12  Score=84.56  Aligned_cols=85  Identities=6%  Similarity=-0.083  Sum_probs=52.3

Q ss_pred             CCEEEEcCCCC-CccC--eEEEeeEec-cCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPGG-NRTR--GLELTRQTR-YEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~~-~~~g--~~L~C~a~G-~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      ||.+...|... ...|  +.|.|.+.| +|.|  +++|+ +++..+...... ......+|.|.+....      |.|.|
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~-~~~~~l~~~~~~-~~~~~s~l~i~~~~~d------d~g~y   75 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLL-RGEKELKREPAV-GEPAEVTTTVLVRRDH------HGAQF   75 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEE-ETTEEEEEEECC-TTTEEEEEEEECCSSC------SSCEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEc-cccccccccccc-cccceEEEEEeeehhH------CCCEE
Confidence            45555555442 2233  999999986 6666  57897 477777532211 1112236777655432      89999


Q ss_pred             EEEEEcCCCce-EEEEEEEE
Q psy5697         120 RCRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       120 ~C~A~N~~G~~-~s~~v~v~  138 (145)
                      +|.|+|.+|+. .+..+.+.
T Consensus        76 tC~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          76 SCRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEEECGGGTSCEEEEEC
T ss_pred             EEEEEeCCCCccCeEeeeEc
Confidence            99999999986 33344433

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.4e-12  Score=81.39  Aligned_cols=60  Identities=8%  Similarity=-0.015  Sum_probs=44.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCc-eEEee-CC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDL-RIALS-NG--SLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~-~~~~~-~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.+. .|.|.+.|++ ||.++...+.. ..... ++  +|.|.++..+      |+|.|+|.|.|..+
T Consensus        18 v~l~C~v~-~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~------D~G~Y~C~a~n~~~   81 (90)
T d1x44a1          18 VELECEVS-EDDANVKWFK-NGEEIIPGPKSRYRIRVEGKKHILIIEGATKA------DAAEYSVMTTGGQS   81 (90)
T ss_dssp             EEEEEECS-SSSCCCEEEE-TTEECCCSTTCSEEEEEETTEEEEEEEEECTT------TCSEEEEEETTEEE
T ss_pred             EEEEEEEC-CCCceEEEEE-eecccCCCCCccEEEEEeCCccEEEECccccc------cCEEEEEEEecceE
Confidence            89999994 6999999985 78877543322 23333 33  7999988765      89999999998543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.23  E-value=4.6e-12  Score=81.09  Aligned_cols=70  Identities=13%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             CCEEEEcCCC-CCccC--eEEEeeEeccCCCE-EEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPG-GNRTR--GLELTRQTRYEPSQ-LGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~-~~~~g--~~L~C~a~G~P~P~-i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +|++..+|+. .+..|  +.|.|.+.|.|.|. +.|+ +||+.+..        .+++|.|..+..+      |+|.|+|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~-~~g~~~~~--------~~~~l~i~~v~~~------dsG~Y~C   68 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWF-HNGNLIPT--------HTQPSYRFKANNN------DSGEYTC   68 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEE-ETTEECTT--------CCSSEEEEECCGG------GCEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEee-cccccccc--------cccceEEeecccc------CCcEEEE
Confidence            5678888876 33344  99999999999885 6665 68877632        2467888877655      8999999


Q ss_pred             EEEcCCCce
Q psy5697         122 RASNEAGVI  130 (145)
Q Consensus       122 ~A~N~~G~~  130 (145)
                      .|.|..++.
T Consensus        69 ~a~ns~~S~   77 (85)
T d2fcba1          69 QTGQTSLSD   77 (85)
T ss_dssp             ECTTSBCCC
T ss_pred             ECCCCcccc
Confidence            999987664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.22  E-value=5.4e-13  Score=86.36  Aligned_cols=68  Identities=12%  Similarity=0.037  Sum_probs=50.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHV  137 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v  137 (145)
                      .+.|.|.+ ++|.|.++|+ +||.++...+.......++  +|.|.++..+      |+|.|.|.|.|..+++   .+.|
T Consensus        18 ~~~~~c~v-s~p~~~v~W~-k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~------D~G~Y~c~a~n~~~sa---~l~V   86 (89)
T d1tiua_          18 TAHFEIEL-SEPDVHGQWK-LKGQPLTASPDCEIIEDGKKHILILHNCQLG------MTGEVSFQAANAKSAA---NLKV   86 (89)
T ss_dssp             CCCEEEBC-SSSSCCCBCC-SSSCCCCSSSSCEEEECSSCEEEECCSCCSC------CCSEECCBCSSCBCCE---EEEE
T ss_pred             cEEEEEEE-CCCCcEEEEE-EeeeecccceeEEEEeeceeEEEEEcCCChh------cCEEEEEEECceEEEE---EEEE
Confidence            38999997 6799999997 6888887655444433333  6999888765      8999999999976653   4444


Q ss_pred             E
Q psy5697         138 K  138 (145)
Q Consensus       138 ~  138 (145)
                      +
T Consensus        87 ~   87 (89)
T d1tiua_          87 K   87 (89)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5e-11  Score=79.23  Aligned_cols=64  Identities=11%  Similarity=-0.071  Sum_probs=41.2

Q ss_pred             CeEEEeeEec-c--CCCEEEEEccCCeEeecccCceEEeeC--C--cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTR-Y--EPSQLGWRFSNNTVIAYVKDLRIALSN--G--SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G-~--P~P~i~W~~~dg~~i~~~~~~~~~~~~--G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.+.| .  |.++|+|+ +||+.+...........+  .  +|.|....      +.|.|.|+|.|+|.+|..
T Consensus        19 ~v~l~C~v~g~~p~p~~~i~W~-~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~------~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          19 SFTIECRVPTVEPLDSLTLFLF-RGNETLHYETFGKAAPAPQEATATFNSTADR------EDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             EEEEEEEECSCBCGGGEEEEEE-ETTEEEEEEECCSSTTCTTCEEEEEEEECCG------GGGGCEEEEEEEEECGGG
T ss_pred             EEEEEEEEeCcccCCCceEEEE-cCCEEeeecccceEeecccceeEEEEEeeeh------hcCCcEEEEEEEecCCCC
Confidence            3999999987 4  45689998 488887643211111111  1  35554432      226789999999999864

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=4.2e-09  Score=68.77  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             CeEEEeeE--eccCCCEEEEEccCCeEeec---------ccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQ--TRYEPSQLGWRFSNNTVIAY---------VKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a--~G~P~P~i~W~~~dg~~i~~---------~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .++|.|..  .......|+|++ ++..+..         ..+......+|+|.|.+++.+      |+|.|+|.+.|..|
T Consensus        12 sV~L~~~~~~~~~~i~~I~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~------DsG~Y~c~v~~~~g   84 (98)
T d1hnga1          12 GINLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD------DSGTYNVTVYSTNG   84 (98)
T ss_dssp             CEEECCTTCCCCTTEEEEEEEE-TTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGG------GCEEEEEEEEETTC
T ss_pred             CEEEECCCCCCccchheeeeec-cccceeEEccCCccccCCCeEEECCCccEEEeCCCHH------HCEEEEEEEEeCCC
Confidence            38999963  233346899985 5555431         112235667899999998776      89999999999999


Q ss_pred             ce-EEEEEEEEec
Q psy5697         129 VI-LSRFVHVKAD  140 (145)
Q Consensus       129 ~~-~s~~v~v~~~  140 (145)
                      .. .++.+.|+..
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            86 5677777654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.6e-09  Score=67.66  Aligned_cols=63  Identities=13%  Similarity=0.175  Sum_probs=45.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCeEeeccc----------CceE--EeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNTVIAYVK----------DLRI--ALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~----------~~~~--~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .++|.|.. +.|.+.|.|++ ++..+....          ..+.  ...+++|.|.+++.+      |+|.|+|.|.|..
T Consensus        12 sVtl~c~~-~~p~~~v~W~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~------DsG~Y~c~~~n~~   83 (93)
T d1ccza1          12 NVTFHVPS-NVPLKEVLWKK-QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS------DEDEYEMESPNIT   83 (93)
T ss_dssp             CEEECCCC-SSCCSCEEEEE-TTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGG------GCEEEEEECTTCC
T ss_pred             CEEEEecC-CCCCcEEEEEE-eccccceeeecceeeCCCccceEEEcCCeeEEEEEecChh------hCEEEEEEEECCC
Confidence            39999986 57999999975 555542100          0111  134679999998776      8999999999998


Q ss_pred             Cce
Q psy5697         128 GVI  130 (145)
Q Consensus       128 G~~  130 (145)
                      |+.
T Consensus        84 ~t~   86 (93)
T d1ccza1          84 DTM   86 (93)
T ss_dssp             SCE
T ss_pred             cEE
Confidence            865

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=3e-07  Score=60.66  Aligned_cols=71  Identities=25%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccCCe----Eee-------------cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSNNT----VIA-------------YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~dg~----~i~-------------~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|...-.....+.|+|.+..    .+.             ...++.....||+|.|.+++.+      |+|.|.|.
T Consensus        16 ~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~------D~G~Y~c~   89 (107)
T d1l6za1          16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK------DMGVYTLD   89 (107)
T ss_dssp             CEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGG------GCEEEEEE
T ss_pred             CEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCch------hCEEEEEE
Confidence            399999733333678999863211    011             0112345678999999998776      89999999


Q ss_pred             EEcCCCceEEEEEE
Q psy5697         123 ASNEAGVILSRFVH  136 (145)
Q Consensus       123 A~N~~G~~~s~~v~  136 (145)
                      +.|.-+......+.
T Consensus        90 v~~~~~~~~~~~v~  103 (107)
T d1l6za1          90 MTDENYRRTQATVR  103 (107)
T ss_dssp             EEETTEEECCCCEE
T ss_pred             EEECCCCEEEEEEE
Confidence            99887654333333

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.4e-06  Score=57.68  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             eEEEeeEeccC---CCEEEEEccCCeEe----------ec-----ccCceEEe----e--CCcEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYE---PSQLGWRFSNNTVI----------AY-----VKDLRIAL----S--NGSLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P---~P~i~W~~~dg~~i----------~~-----~~~~~~~~----~--~GsL~i~~~~~~~~~~~~d~  116 (145)
                      ++|.|...+.+   ...|.|++.+....          ..     ........    .  +.+|.|.+++.+      |+
T Consensus        20 v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~------D~   93 (126)
T d1pkoa_          20 AELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS------DE   93 (126)
T ss_dssp             EEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG------GC
T ss_pred             EEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh------HC
Confidence            99999975433   45699987543211          00     00111111    1  238999998766      89


Q ss_pred             eEEEEEEEcCCCceEEEEEEEE
Q psy5697         117 TVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus       117 G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      |.|.|.+.|..|.. +..++|.
T Consensus        94 G~Y~C~v~~~~~~~-~~~v~L~  114 (126)
T d1pkoa_          94 GGYTCFFRDHSYQE-EAAVELK  114 (126)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEE
T ss_pred             eEEEEEEEECCCEE-EEEEEEE
Confidence            99999999998766 3334444

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.2e-07  Score=57.09  Aligned_cols=87  Identities=8%  Similarity=-0.005  Sum_probs=53.6

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.+.-.|...+  +..++|.|++.. +...+.|+ ++|...... +..........+.|.++..+      |+|.|+|.
T Consensus         4 KPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~-k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~------~~G~Y~C~   75 (95)
T d1olla1           4 KPFIWAEPHFMVPKEKQVTICCQGNY-GAVEYQLH-FEGSLFAVDRPKPPERINKVKFYIPDMNSR------MAGQYSCI   75 (95)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECCT-TCCEEEEE-ETTEEEEEECCSSCTTCCEEEEEESSCCGG------GCEEEEEE
T ss_pred             CCEEEeeCCCcccCCCcEEEEEecCC-CccEEEEE-ECCCCcceeEEccCCCccEEEEEEeeeecC------CCceEEEE
Confidence            567767776533  333999998753 56788886 466543211 10000001125888888765      89999999


Q ss_pred             EEcCCCce-EEEEEEEEec
Q psy5697         123 ASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus       123 A~N~~G~~-~s~~v~v~~~  140 (145)
                      ..|..+.. .|..+.|.+.
T Consensus        76 y~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          76 YRVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EEETTEECCCCCCEEEEEE
T ss_pred             eCCCCCccCCCCCEEEEEe
Confidence            99886643 6666666543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-06  Score=55.90  Aligned_cols=85  Identities=9%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceE---EeeCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRI---ALSNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~---~~~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +|.+.-.|...+  ++.++|.|.+.. +.-.+.|++ +|...........   ......+.|.++..+      |+|.|+
T Consensus         7 kPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~l~k-~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~------~~G~Y~   78 (99)
T d1ucta1           7 MPFISAKSSPVIPLDGSVKIQCQAIR-EAYLTQLMI-IKNSTYREIGRRLKFWNETDPEFVIDHMDAN------KAGRYQ   78 (99)
T ss_dssp             CCCEEESSCSEEETTCCEEEEECCCT-TCSEEEEEE-EETTEEEECSEECC----CCCEEEECSCCGG------GCEEEE
T ss_pred             CCEEEecCCCceeCCCeEEEEEcCCC-CCcEEEEEE-CCCcCceeccccccCCCCceEEEEecCCCHH------HCceEE
Confidence            466666665432  333999999754 667889975 4432111000101   112235888888765      899999


Q ss_pred             EEEEcCCCce-EEEEEEEE
Q psy5697         121 CRASNEAGVI-LSRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~-~s~~v~v~  138 (145)
                      |...|..+.. .|..+.|.
T Consensus        79 C~y~~~~~~S~~Sdpl~L~   97 (99)
T d1ucta1          79 CQYRIGHYRFRYSDTLELV   97 (99)
T ss_dssp             EEEEETTTEEEECCCEEEE
T ss_pred             EEEECCCcccCCCCCEEEE
Confidence            9999987743 66666654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.6e-06  Score=53.21  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=38.4

Q ss_pred             ccCeEEEeeEec-cCCC--EEEEEccCCeEeecccCceEEee------CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          58 RTRGLELTRQTR-YEPS--QLGWRFSNNTVIAYVKDLRIALS------NGSLMFPPFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        58 ~~g~~L~C~a~G-~P~P--~i~W~~~dg~~i~~~~~~~~~~~------~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +..+.|.|.+.| .|.+  +|+|+ +++..+...........      ..+|.+.+-      .+.|...|+|.|+|.++
T Consensus        16 G~~~~l~C~v~~~~P~~~~~i~W~-~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~------~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          16 GKPITVKCSVADVYPFDRLEIDLL-KGDHLMKSQEFLEDADRKSLETKSLEVTFTPV------IEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             TSCEEEEEEEEEEBSGGGEEEEEE-ETTEEEEEEECCSCCSSCCCEEEEEEEEECCC------GGGTTCEEEEEEEECSC
T ss_pred             CCeEEEEeEeCCcCCCCceEEEEe-ccCceeeccccccccccCCcceeeEEEEccCC------hHHCCcEEEEEEEcCcC
Confidence            334899999864 7754  79997 46776652211111111      124555432      12145579999999976


Q ss_pred             ce
Q psy5697         129 VI  130 (145)
Q Consensus       129 ~~  130 (145)
                      ..
T Consensus        89 ~~   90 (109)
T d1vcaa1          89 EM   90 (109)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.9e-06  Score=54.33  Aligned_cols=34  Identities=18%  Similarity=0.433  Sum_probs=26.3

Q ss_pred             CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          98 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        98 GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      .+|.|.+++.+      |+|.|.|.+.|..|.. +..++|.
T Consensus        88 ~sL~I~~v~~~------D~G~Y~C~v~~~~~~~-~~~~~L~  121 (124)
T d1eaja_          88 ASINVTNLQLS------DIGTYQCKVKKAPGVA-NKKIHLV  121 (124)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             EEEEEcccEEc------cCEEEEEEEEECCCeE-EeEEEEE
Confidence            37999988766      8999999999988755 4455544

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.02  E-value=8.1e-06  Score=53.31  Aligned_cols=37  Identities=14%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             CcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEEEEEEEec
Q psy5697          98 GSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSRFVHVKAD  140 (145)
Q Consensus        98 GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~~v~v~~~  140 (145)
                      .+|.|.+++.+      |+|.|.|.+.|.-+.. ....++|...
T Consensus        81 ~sL~I~~v~~~------DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYS------DNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChH------HCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            48999998766      8999999999876544 4445666544

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-05  Score=51.48  Aligned_cols=60  Identities=17%  Similarity=0.256  Sum_probs=40.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeE-eeccc-----------CceEE----eeCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTV-IAYVK-----------DLRIA----LSNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~-i~~~~-----------~~~~~----~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      ++|.|..+......+.|++.+... +....           +....    ..+|  +|.|.+++.+      |+|.|.|.
T Consensus        12 vtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~------DsG~Y~C~   85 (97)
T d2nxyb1          12 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE------DSDTYICE   85 (97)
T ss_dssp             EEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGG------GCEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChH------HCEEEEEE
Confidence            999999988888899998755422 11100           01111    1222  7999998776      89999999


Q ss_pred             EEcC
Q psy5697         123 ASNE  126 (145)
Q Consensus       123 A~N~  126 (145)
                      +.|.
T Consensus        86 v~~~   89 (97)
T d2nxyb1          86 VEDQ   89 (97)
T ss_dssp             ETTE
T ss_pred             EecC
Confidence            9764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=1.2e-05  Score=53.72  Aligned_cols=73  Identities=11%  Similarity=0.088  Sum_probs=45.8

Q ss_pred             CCEEEEcCCC-CC--ccCeEEEeeEeccCCCEEEEEccC-CeE------ee-c---------c-----c-CceEEeeCC-
Q psy5697          46 YPFRIKSAPG-GN--RTRGLELTRQTRYEPSQLGWRFSN-NTV------IA-Y---------V-----K-DLRIALSNG-   98 (145)
Q Consensus        46 ~P~~i~~p~~-~~--~~g~~L~C~a~G~P~P~i~W~~~d-g~~------i~-~---------~-----~-~~~~~~~~G-   98 (145)
                      +|.+...|++ ..  +..+.|.|.+.+...+.+.|++.+ |+.      +- .         .     + +......++ 
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            3556666666 22  333999999999999999998632 211      10 0         0     0 001112333 


Q ss_pred             --cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          99 --SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        99 --sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                        +|.|.++..+      |+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~------Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKE------NEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGG------GCEEEEEEEE
T ss_pred             EeEEEEcccccC------CCEEEEeeEe
Confidence              5999888766      8999999875

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.77  E-value=4.8e-05  Score=49.58  Aligned_cols=61  Identities=10%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee-----------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.........+.|++.. |....           ..+.......++   +|.|.++..+      |+|+|.|.+.
T Consensus        17 svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~------DsA~YyCa~~   90 (106)
T d1a0ql1          17 KVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE------DIATYYCLQY   90 (106)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG------GCSEEEEEEC
T ss_pred             CEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc------CCEeEEEEEe
Confidence            3999999887777789999742 22111           111111222222   6999988766      8999999986


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      +.
T Consensus        91 ~~   92 (106)
T d1a0ql1          91 YN   92 (106)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.77  E-value=7.1e-05  Score=48.62  Aligned_cols=62  Identities=13%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCc-eEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDL-RIALS--NGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~-~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|..++.....+.|++.. |+.   +-        ..+.. .....  +.+|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------DSa~YyCa~~   91 (107)
T d1kcvl1          18 AVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAD------DDADYYCGQS   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheec------CCceEEEEec
Confidence            3999999988777889999742 221   11        01111 11112  227999888766      8999999876


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      ...
T Consensus        92 ~~~   94 (107)
T d1kcvl1          92 YSS   94 (107)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.75  E-value=5.5e-05  Score=49.57  Aligned_cols=62  Identities=16%  Similarity=0.102  Sum_probs=40.1

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeEee----c-------ccCc-eEEee--CCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTVIA----Y-------VKDL-RIALS--NGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~i~----~-------~~~~-~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.........+.|++. .|+...    .       .+.. .....  +.+|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------Dsa~YyCa~~   91 (107)
T d1c5cl1          18 RVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE------DFADYYCLQY   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEEC
T ss_pred             CEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc------CCeEEEEecC
Confidence            399999998878888999974 332211    0       0111 11111  237999988766      8999999876


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      +..
T Consensus        92 ~~~   94 (107)
T d1c5cl1          92 ASF   94 (107)
T ss_dssp             SSS
T ss_pred             cCC
Confidence            643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.74  E-value=7.9e-05  Score=48.52  Aligned_cols=62  Identities=8%  Similarity=-0.062  Sum_probs=39.3

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeEee----------c-ccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTVIA----------Y-VKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~i~----------~-~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|...+.-...+.|++. .|+...          . .+..... ..+  -+|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   91 (106)
T d1i8ka_          18 KVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE------DVGDYYCLQS   91 (106)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccc------cCEEEeEecC
Confidence            399999987777778999863 332211          0 1111111 122  26999988765      8999999876


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      +..
T Consensus        92 ~~~   94 (106)
T d1i8ka_          92 FNV   94 (106)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.72  E-value=4.3e-05  Score=50.16  Aligned_cols=60  Identities=18%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee---c-c----cCceEE---ee--CCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA---Y-V----KDLRIA---LS--NGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~---~-~----~~~~~~---~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      ++|.|...+.+...+.|++.+ |..   +-   . .    ......   ..  .-+|.|..+..+      |+|.|.|.+
T Consensus        18 vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~------Dsg~Y~Ca~   91 (114)
T d2cdea1          18 CTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS------DSASYICVV   91 (114)
T ss_dssp             CEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG------GCSEEEEEE
T ss_pred             EEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh------hCcccceee
Confidence            999999988888899999643 211   11   0 0    001111   11  126999887765      899999999


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      .+.
T Consensus        92 ~~~   94 (114)
T d2cdea1          92 SDR   94 (114)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            875

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.71  E-value=7.8e-05  Score=48.52  Aligned_cols=62  Identities=13%  Similarity=0.048  Sum_probs=39.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee-----------cccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.....-...+.|++.. |+...           ..+..... ...  -+|.|.++..+      |+|+|.|.+.
T Consensus        18 ~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   91 (107)
T d1j1pl_          18 SVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE------DFGMYFCQQA   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcC------CCEEEEEEcC
Confidence            3999999877677889999743 32211           01111111 112  27999888765      8999999876


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      +..
T Consensus        92 ~~~   94 (107)
T d1j1pl_          92 NSW   94 (107)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            553

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.69  E-value=5.1e-05  Score=49.71  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee---c------ccCceE-Ee-eCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA---Y------VKDLRI-AL-SNG--SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~---~------~~~~~~-~~-~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|..++.....+.|++.. |+.   +-   .      ...... .. .+.  +|.|.++..+      |+|+|.|.+
T Consensus        18 v~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------Dsg~YyCa~   91 (113)
T d2bnqd1          18 LVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG------DSATYLCAV   91 (113)
T ss_dssp             EEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG------GCEEEEEEE
T ss_pred             EEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC------CCcEEeEeE
Confidence            999999988888899999732 221   10   0      011111 11 122  7999888765      899999999


Q ss_pred             EcCCC
Q psy5697         124 SNEAG  128 (145)
Q Consensus       124 ~N~~G  128 (145)
                      ....|
T Consensus        92 ~~~~~   96 (113)
T d2bnqd1          92 RPTSG   96 (113)
T ss_dssp             EESSS
T ss_pred             ecCCC
Confidence            75543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.69  E-value=0.00022  Score=46.53  Aligned_cols=63  Identities=14%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---e-e-------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---I-A-------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i-~-------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|..++.....+.|++.. |+.   + .       ..+.......++   +|.|.++..+      |+|+|.|.+.
T Consensus        18 svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~------Dsa~YyCA~~   91 (108)
T d1jhll_          18 TITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE------DFAMYICQQH   91 (108)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT------CCSEEEEEEC
T ss_pred             CEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec------cceEEEEeeC
Confidence            3999999988777889998743 221   1 1       011112222333   7999888765      8999999877


Q ss_pred             cCCC
Q psy5697         125 NEAG  128 (145)
Q Consensus       125 N~~G  128 (145)
                      +...
T Consensus        92 ~~~~   95 (108)
T d1jhll_          92 NEYP   95 (108)
T ss_dssp             SSSS
T ss_pred             CCcc
Confidence            6543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=3e-05  Score=50.94  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             CeEEEeeEec-cCCCEEEEEccC----CeEee---------------cccCce--EE-ee---CCcEEEcCCCCCCCCCC
Q psy5697          60 RGLELTRQTR-YEPSQLGWRFSN----NTVIA---------------YVKDLR--IA-LS---NGSLMFPPFPETGFRPD  113 (145)
Q Consensus        60 g~~L~C~a~G-~P~P~i~W~~~d----g~~i~---------------~~~~~~--~~-~~---~GsL~i~~~~~~~~~~~  113 (145)
                      .+.|.|.+.+ .....+.|++..    ++.+.               ..+..+  .. ..   ..+|.|.++..+     
T Consensus        15 sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~-----   89 (115)
T d2atpb1          15 TAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPE-----   89 (115)
T ss_dssp             CEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGG-----
T ss_pred             CEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCC-----
Confidence            3999999887 456789998642    22210               001111  11 11   226999888766     


Q ss_pred             CCCeEEEEEEEcC
Q psy5697         114 VHSTVYRCRASNE  126 (145)
Q Consensus       114 ~d~G~Y~C~A~N~  126 (145)
                       |+|.|.|.+.+.
T Consensus        90 -Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          90 -DSDFYFCATVGS  101 (115)
T ss_dssp             -GCEEEEEEEECS
T ss_pred             -CCcEEEEeEcCC
Confidence             899999987543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.62  E-value=0.00011  Score=47.89  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDLRIALSN---GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|...+.-.-.+.|++.. |+.   +-        ..+.......+   -+|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   91 (107)
T d1ospl1          18 RVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTE------DVATYFCQQY   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGG------GCSEEEEEEC
T ss_pred             CEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccc------cCCcEEEeec
Confidence            3999999887776789999742 321   11        01111122222   27999888766      8999999876


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      ...
T Consensus        92 ~~~   94 (107)
T d1ospl1          92 WSP   94 (107)
T ss_dssp             SSS
T ss_pred             cCC
Confidence            543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.57  E-value=0.00016  Score=46.97  Aligned_cols=60  Identities=13%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee--------ccc-CceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVK-DLRIALSNG--SLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~-~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|...+.-...+.|++.. |+.   +-        ..+ +......+.  .|.|.++..+      |+|+|.|.+..
T Consensus        18 vtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~~   91 (106)
T d1op3k1          18 ITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD------DFATYHCQHYA   91 (106)
T ss_dssp             EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG------GCSEEEEEEEC
T ss_pred             EEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEcccccc------CCCcEeeeeCC
Confidence            999999877667789999742 221   11        011 111112222  6999888766      89999998765


Q ss_pred             C
Q psy5697         126 E  126 (145)
Q Consensus       126 ~  126 (145)
                      .
T Consensus        92 ~   92 (106)
T d1op3k1          92 G   92 (106)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.56  E-value=0.00016  Score=47.05  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|..+..-.+.+.|++.. |+.   +-        ..+..... ..+.  +|.|.++.++      |+|+|.|.+.
T Consensus        18 svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------DsA~YyCa~~   91 (107)
T d1tjgl1          18 RITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE------DFATYYCQQL   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEEC
T ss_pred             CEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC------cCceEEEEEC
Confidence            3999999876667899999742 321   11        01111122 2223  6999888766      8999999766


Q ss_pred             cCC
Q psy5697         125 NEA  127 (145)
Q Consensus       125 N~~  127 (145)
                      +..
T Consensus        92 ~~~   94 (107)
T d1tjgl1          92 HFY   94 (107)
T ss_dssp             SBS
T ss_pred             cCC
Confidence            543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.56  E-value=0.00024  Score=45.66  Aligned_cols=73  Identities=11%  Similarity=0.057  Sum_probs=43.1

Q ss_pred             CCCEEEEcCCCCCccCeEEEeeEeccCCCEEEEEccC-CeEee-----------cccCc-eEEeeC--CcEEEcCCCCCC
Q psy5697          45 HYPFRIKSAPGGNRTRGLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVKDL-RIALSN--GSLMFPPFPETG  109 (145)
Q Consensus        45 ~~P~~i~~p~~~~~~g~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~~~-~~~~~~--GsL~i~~~~~~~  109 (145)
                      +||.+...|    +..++|.|...+.....+.|++.. |+...           ..+.. .....+  -.|.|.++..+ 
T Consensus         4 Qp~sl~~~~----G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~-   78 (103)
T d8faba1           4 QPPSVSVSP----GQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAE-   78 (103)
T ss_dssp             CCSEEEECT----TSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG-
T ss_pred             CCCeEEECC----CCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchh-
Confidence            355444443    223999999877667789999742 32211           00111 111122  27888887665 


Q ss_pred             CCCCCCCeEEEEEEEcCC
Q psy5697         110 FRPDVHSTVYRCRASNEA  127 (145)
Q Consensus       110 ~~~~~d~G~Y~C~A~N~~  127 (145)
                           |+|+|.|.+.+..
T Consensus        79 -----Dsa~YyCA~~~~~   91 (103)
T d8faba1          79 -----DEADYYCQAWDNS   91 (103)
T ss_dssp             -----GCEEEEEEEEETT
T ss_pred             -----HCceEEeeecCCC
Confidence                 8999999876543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=0.00018  Score=46.73  Aligned_cols=72  Identities=14%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             EEEcCCC-CCccC--eEEEeeEeccCCCEEEEEccC-CeEee-----------ccc-CceEEee--CCcEEEcCCCCCCC
Q psy5697          49 RIKSAPG-GNRTR--GLELTRQTRYEPSQLGWRFSN-NTVIA-----------YVK-DLRIALS--NGSLMFPPFPETGF  110 (145)
Q Consensus        49 ~i~~p~~-~~~~g--~~L~C~a~G~P~P~i~W~~~d-g~~i~-----------~~~-~~~~~~~--~GsL~i~~~~~~~~  110 (145)
                      +.+.|.+ +...|  ++|.|...+.....+.|++.. |+...           ..+ +......  +-+|.|.++..+  
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~--   81 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE--   81 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC--
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec--
Confidence            3455665 23333  999999988888889999643 32211           000 1111111  227999888766  


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy5697         111 RPDVHSTVYRCRASNE  126 (145)
Q Consensus       111 ~~~~d~G~Y~C~A~N~  126 (145)
                          |+|+|.|.+.+.
T Consensus        82 ----Dsa~YyCa~~~~   93 (107)
T d3cx5k1          82 ----DIATYFCQHHIK   93 (107)
T ss_dssp             ----CCSEEEEEECSS
T ss_pred             ----CCCcEEeeeCCC
Confidence                899999976543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.54  E-value=0.00034  Score=45.74  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             CeEEEeeEecc--CCCEEEEEcc-CCeE----eecccCceEEee--CC--cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFS-NNTV----IAYVKDLRIALS--NG--SLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~-dg~~----i~~~~~~~~~~~--~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .++|.|..++.  +...+.|++. .|+.    +....+......  ..  +|.|.+++.+      |+|.|.|.+...
T Consensus        17 svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------Dsa~YyCa~~~~   88 (113)
T d1vesa_          17 SLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVE------DSGTYKCQAFYS   88 (113)
T ss_dssp             CEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEEEEE
T ss_pred             CEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccC------CcceEeeeeecc
Confidence            39999998764  4567999863 2221    111111112222  22  6899888766      899999998654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0001  Score=46.99  Aligned_cols=62  Identities=10%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             eEEEeeEec-cCCCEEEEEccCCeEeecccCceEE-eeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTR-YEPSQLGWRFSNNTVIAYVKDLRIA-LSNGSLMFPP---FPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G-~P~P~i~W~~~dg~~i~~~~~~~~~-~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.+.| +|.|+|+|+ +||+.+......... ..+|+..+..   +...      +...|.|.++.+.-.
T Consensus        19 ~~L~C~~~g~~P~~~V~W~-~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~------~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          19 RRIICSTSGGFPEPHLSWL-ENGEELNAINTTVSQDPETELYAVSSKLDFNMT------TNHSFMCLIKYGHLR   85 (95)
T ss_dssp             EEEEEEEEEESSCEEEEEE-ESSCEECCSEEEEEECTTTCCEEEEEEEEEETT------SCEEEEEEEEETTCC
T ss_pred             EEEEEEECcccCCCEEEEe-cCCcEecccceeeEecCCCccEEEEEEEEccCC------ccceEEEEEEecCCC
Confidence            789999987 799999997 577776532211111 2245322221   1111      467899999877443

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.00028  Score=45.63  Aligned_cols=60  Identities=15%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-Ce---Eee--------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NT---VIA--------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~---~i~--------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|..++.-...+.|++.. |+   .+-        ..+.......++   +|.|.++..+      |+|+|.|.+.
T Consensus        17 svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   90 (106)
T d1lk3l1          17 KLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD------DTAIYFCQQS   90 (106)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChh------hCCCcccccc
Confidence            3999999988777889998742 21   111        011111111222   7999888766      8999999665


Q ss_pred             c
Q psy5697         125 N  125 (145)
Q Consensus       125 N  125 (145)
                      .
T Consensus        91 ~   91 (106)
T d1lk3l1          91 W   91 (106)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.48  E-value=0.00025  Score=46.02  Aligned_cols=61  Identities=18%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeE---ee--------cccCceE-Eee--CCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTV---IA--------YVKDLRI-ALS--NGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~---i~--------~~~~~~~-~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.........+.|++. .|+.   +-        ..+.... ...  +-+|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   91 (107)
T d1d5il1          18 RVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYE------DMGIYYCLQY   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCc------CCEEEEeeec
Confidence            399999988777788999864 3321   11        0111111 112  227999888765      8999999876


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      ..
T Consensus        92 ~~   93 (107)
T d1d5il1          92 DE   93 (107)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.47  E-value=0.00029  Score=45.79  Aligned_cols=61  Identities=15%  Similarity=0.117  Sum_probs=38.3

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeE---ee--------cccCc-eEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTV---IA--------YVKDL-RIALSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~---i~--------~~~~~-~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.....-...+.|++. .|+.   +-        ..+.. .....+  ..|.|.++..+      |+|+|.|.+.
T Consensus        18 svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~------DsA~YyCa~~   91 (107)
T d1mexl1          18 RVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE------DLAEYFCQQY   91 (107)
T ss_dssp             CEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEEC
T ss_pred             CEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee------cceeEEEeEC
Confidence            399999987666678999964 2221   11        01111 111112  36999888766      8999999876


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      +.
T Consensus        92 ~~   93 (107)
T d1mexl1          92 NS   93 (107)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00034  Score=44.59  Aligned_cols=59  Identities=12%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeeccc---CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVK---DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~---~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.|+| +|.. .|+|+ +||+.+....   .......+|+....   .+...      +...|.|.++..
T Consensus        18 ~tL~C~~~gFyP~~i~v~W~-~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~------~~~~ytC~V~H~   84 (94)
T d1de4a1          18 TTLRCRALNYYPQNITMKWL-KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPG------EEQRYTCQVEHP   84 (94)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTT------CGGGEEEEEECT
T ss_pred             EEEEEEEeeEECCCCEEEEE-ECCEECccCcccccceEeCCCceEEEEEEEEECCC------CCCEEEEEEEeC
Confidence            789999999 5755 89997 5888875321   11122344443222   23222      356799999876

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.47  E-value=0.00056  Score=44.57  Aligned_cols=73  Identities=18%  Similarity=0.088  Sum_probs=44.1

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeE---ee-c---------ccCce-EEeeC---CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTV---IA-Y---------VKDLR-IALSN---GSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~---i~-~---------~~~~~-~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .++|.|...+.-.+.+.|++. .|+.   +- .         ....+ ....+   -+|.|.++..+      |+|+|.|
T Consensus        17 svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsg~YyC   90 (115)
T d1i9ea_          17 SLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS------DSAVYFC   90 (115)
T ss_dssp             CEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG------GCEEEEE
T ss_pred             CEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc------ccceecc
Confidence            399999988877889999863 3321   11 0         00011 11122   37999988766      8999999


Q ss_pred             EEEcCCCceE---EEEEEEE
Q psy5697         122 RASNEAGVIL---SRFVHVK  138 (145)
Q Consensus       122 ~A~N~~G~~~---s~~v~v~  138 (145)
                      .+...-....   ...+.|.
T Consensus        91 a~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          91 AVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             EEEETTEEEEECCCEEEEEE
T ss_pred             cccCCCCCCEECCCEEEEEe
Confidence            8764432221   3456665

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.44  E-value=0.00017  Score=47.14  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee-c--------c-cCceEEe--eCC--cEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA-Y--------V-KDLRIAL--SNG--SLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~-~--------~-~~~~~~~--~~G--sL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +.|.|.....-...+.|++.. |+.   +- .        . .+.....  .+.  +|.|.++..+      |+|+|.|.
T Consensus        18 vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa   91 (115)
T d1j8hd1          18 VLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS------DAAEYFCA   91 (115)
T ss_dssp             EEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG------GCEEEEEE
T ss_pred             EEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc------CCccceee
Confidence            999999988777899999742 321   11 0        0 1111111  122  6999888766      89999999


Q ss_pred             EEcC
Q psy5697         123 ASNE  126 (145)
Q Consensus       123 A~N~  126 (145)
                      +...
T Consensus        92 ~~~~   95 (115)
T d1j8hd1          92 VSES   95 (115)
T ss_dssp             EESS
T ss_pred             ecCC
Confidence            9765

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.44  E-value=0.00031  Score=46.08  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=38.4

Q ss_pred             eEEEeeEecc--CCCEEEEEccC-CeE---eecccC-ceEEeeCC----cEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRY--EPSQLGWRFSN-NTV---IAYVKD-LRIALSNG----SLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~--P~P~i~W~~~d-g~~---i~~~~~-~~~~~~~G----sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ++|.|...+.  ....+.|++.. |+.   +....+ ......++    +|.|.+++.+      |+|+|.|.+.-..
T Consensus        17 vtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~------Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          17 LTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVE------DGGTYRCGLGVAG   88 (112)
T ss_dssp             EEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEECBTT
T ss_pred             EEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCc------cCEEEeEEEecCC
Confidence            9999988664  45789999742 221   111111 12222222    6999888765      8999999876543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00064  Score=43.12  Aligned_cols=72  Identities=19%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             eEEEeeE-eccCCCEEEEEccCCeE---eecccCceEE-eeCC-----cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQ-TRYEPSQLGWRFSNNTV---IAYVKDLRIA-LSNG-----SLMFPPFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a-~G~P~P~i~W~~~dg~~---i~~~~~~~~~-~~~G-----sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      ..|+|.+ .-.-.|.++|-|.+|..   ++..+..... ..++     .|.|.++..+      |.|.|+|.|.=.-|-+
T Consensus        21 f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~s------DnGsYrCSanf~s~vi   94 (104)
T d1xaua_          21 FKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLS------DNGSYSCSTNFNSQVI   94 (104)
T ss_dssp             EEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGG------GCEEEEEEEEETTEEE
T ss_pred             eEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeec------CCCceEEecCCChhhe
Confidence            7899997 55568999999878753   3333332221 2233     3666666655      8999999998777777


Q ss_pred             EEEEEEEE
Q psy5697         131 LSRFVHVK  138 (145)
Q Consensus       131 ~s~~v~v~  138 (145)
                      -|..+++.
T Consensus        95 eSHSvti~  102 (104)
T d1xaua_          95 NSHSVTIH  102 (104)
T ss_dssp             ECCCEEEE
T ss_pred             ecceEEEE
Confidence            77666654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.42  E-value=0.00031  Score=46.06  Aligned_cols=64  Identities=14%  Similarity=0.190  Sum_probs=39.0

Q ss_pred             CeEEEeeEecc-CCCEEEEEcc-CCe-E--ee-----------cccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFS-NNT-V--IA-----------YVKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~-dg~-~--i~-----------~~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .++|.|...+. ....+.|++. .|+ +  +-           ..++....   ..++  +|.|.+++.+      |+|.
T Consensus        17 ~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------Dsg~   90 (116)
T d1tvda_          17 EVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE------DSAT   90 (116)
T ss_dssp             CEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG------GCEE
T ss_pred             CEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc------cccc
Confidence            39999997554 5788999863 222 1  10           01111111   2222  6889888765      8999


Q ss_pred             EEEEEEcCCCc
Q psy5697         119 YRCRASNEAGV  129 (145)
Q Consensus       119 Y~C~A~N~~G~  129 (145)
                      |.|......+.
T Consensus        91 YyCa~~~~~~~  101 (116)
T d1tvda_          91 YYCAFTLPPPT  101 (116)
T ss_dssp             EEEEEECTTTT
T ss_pred             ceeeEecCCCC
Confidence            99988765443

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00015  Score=47.17  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=37.7

Q ss_pred             CeEEEeeEeccCC--CEEEEEccC-CeEee-----------cccC-ceEE-ee-CC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEP--SQLGWRFSN-NTVIA-----------YVKD-LRIA-LS-NG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~--P~i~W~~~d-g~~i~-----------~~~~-~~~~-~~-~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|..+|.-.  --+.|+++. |+...           ..++ .... .. +.  +|.|.++..+      |+|+|.
T Consensus        17 svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~------Dsa~Yy   90 (111)
T d1cd0a_          17 TVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE------DEADYY   90 (111)
T ss_dssp             CEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG------GCEEEE
T ss_pred             CEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc------cCcEEE
Confidence            3999999887653  348998742 22211           0111 1111 11 22  7888887665      899999


Q ss_pred             EEEEcCC
Q psy5697         121 CRASNEA  127 (145)
Q Consensus       121 C~A~N~~  127 (145)
                      |.+.+..
T Consensus        91 CA~~~~~   97 (111)
T d1cd0a_          91 CQSYDAR   97 (111)
T ss_dssp             EEEEETT
T ss_pred             EeeccCC
Confidence            9887653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.41  E-value=0.00029  Score=45.45  Aligned_cols=74  Identities=11%  Similarity=0.063  Sum_probs=41.8

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEecc-C-CCEEEEEccCCeEeeccc--CceEEeeCCcEEEcC---CCCCCCCCCCCC
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRY-E-PSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPP---FPETGFRPDVHS  116 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~-P-~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~---~~~~~~~~~~d~  116 (145)
                      +|.+..-|+...  ....+|.|.|+|. | .-.|+|+ +||+.+....  .......+|+.....   +..+      +.
T Consensus         3 pP~V~v~p~~~~~~~~~~tL~C~v~gFyP~~i~v~W~-~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~------~~   75 (100)
T d1muja1           3 APQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWL-RNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPS------DD   75 (100)
T ss_dssp             CCEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEE-ESSSBCCSSEEECCCEECTTSCEEEEEEEEECCC------TT
T ss_pred             CCEEEEEcCCccccCCCEEEEEEEEeEECCCCEEEEE-eCCeeccCCceeeeeEECCCCCEEEEEEeEEcCC------CC
Confidence            454444333322  2237899999997 3 4689997 5887765211  111234455433222   2222      45


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      +.|.|.++-+
T Consensus        76 ~~ytC~V~H~   85 (100)
T d1muja1          76 DIYDCKVEHW   85 (100)
T ss_dssp             CCEEEEEECT
T ss_pred             CEEEEEEEEC
Confidence            6799999865

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.41  E-value=0.0006  Score=44.14  Aligned_cols=59  Identities=17%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeE---ee---c------ccCceEE-eeCC---cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTV---IA---Y------VKDLRIA-LSNG---SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~---i~---~------~~~~~~~-~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      ++|.|...+.....+.|++. .|+.   +-   .      ..+.... ...+   +|.|.++..+      |+|+|.|.+
T Consensus        18 vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~   91 (111)
T d1bd2d1          18 SILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG------DSAVYFCAA   91 (111)
T ss_dssp             EEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG------GCEEEEEEE
T ss_pred             EEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc------ccEEEEeec
Confidence            99999988888889999874 2321   10   0      0111111 1222   7899887665      899999988


Q ss_pred             Ec
Q psy5697         124 SN  125 (145)
Q Consensus       124 ~N  125 (145)
                      ..
T Consensus        92 ~~   93 (111)
T d1bd2d1          92 ME   93 (111)
T ss_dssp             ES
T ss_pred             cC
Confidence            74

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.39  E-value=0.00068  Score=44.49  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=39.7

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeEee-------------cc---cCceE-EeeCC---cEEEcCCCCCCCCCCCCCeE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTVIA-------------YV---KDLRI-ALSNG---SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~i~-------------~~---~~~~~-~~~~G---sL~i~~~~~~~~~~~~d~G~  118 (145)
                      .+.|.|...+.-...+.|++. .|+.+.             ..   ++... ...++   +|.|.++..+      |+|+
T Consensus        18 ~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~------Dsa~   91 (118)
T d2ij0c1          18 SVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE------DSGF   91 (118)
T ss_dssp             CEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG------GCEE
T ss_pred             CEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc------cCce
Confidence            399999998887889999974 232111             00   11111 12222   5888887665      8999


Q ss_pred             EEEEEEcCC
Q psy5697         119 YRCRASNEA  127 (145)
Q Consensus       119 Y~C~A~N~~  127 (145)
                      |.|.+.-.-
T Consensus        92 YyCa~~~~~  100 (118)
T d2ij0c1          92 YVCSALAGS  100 (118)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEecCC
Confidence            999986543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0005  Score=43.89  Aligned_cols=83  Identities=10%  Similarity=0.012  Sum_probs=48.7

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeC-CcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSN-GSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~-GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.+...|...+  +..++|.|.......-.+.|+| +|....  . ......+ ..+.|.++..+      |+|.|+|.
T Consensus         5 kP~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k-~g~~~~--~-~~~~~~~~a~F~l~~v~~~------~~G~Y~C~   74 (96)
T d1ucta2           5 KPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAK-EGELSL--P-QHQSGEHPANFSLGPVDLN------VSGIYRCY   74 (96)
T ss_dssp             CCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEE-TTCSSC--C-SEEECSSSEEEECCSCCGG------GCEEEEEE
T ss_pred             CCEEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEE-CCcccc--e-EEcCCCcccEEEEeccccc------cCcEEEEE
Confidence            577777776533  3349999986333445788975 664321  1 1121112 25777777654      89999998


Q ss_pred             EEcCCC----ceEEEEEEEE
Q psy5697         123 ASNEAG----VILSRFVHVK  138 (145)
Q Consensus       123 A~N~~G----~~~s~~v~v~  138 (145)
                      ......    +..|..+.+.
T Consensus        75 y~~~~~p~~~S~~Sd~leL~   94 (96)
T d1ucta2          75 GWYNRSPYLWSFPSNALELV   94 (96)
T ss_dssp             EECTTSTTEECCCCCCEEEE
T ss_pred             EEcCCCCCCccCCCCCEEEE
Confidence            865432    3345555554

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.38  E-value=0.00041  Score=45.20  Aligned_cols=61  Identities=16%  Similarity=0.192  Sum_probs=36.6

Q ss_pred             CeEEEeeEecc----CCCEEEEEcc-CCeEee-----------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRY----EPSQLGWRFS-NNTVIA-----------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~----P~P~i~W~~~-dg~~i~-----------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .++|.|.....    -...+.|++. .|+...           ..+.......++   +|.|.++..+      |+|+|.
T Consensus        18 svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~Yy   91 (111)
T d1j05a_          18 RATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD------DVATYY   91 (111)
T ss_dssp             CEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc------cCccEE
Confidence            39999987432    2344999874 332211           011112222223   7999888765      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+.+.
T Consensus        92 Ca~~~~   97 (111)
T d1j05a_          92 CQQTNE   97 (111)
T ss_dssp             EEECSS
T ss_pred             EeecCC
Confidence            987665

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00036  Score=45.59  Aligned_cols=72  Identities=13%  Similarity=0.037  Sum_probs=42.6

Q ss_pred             EEEcCCC-CCccC--eEEEeeEeccC-CCEEEEEccC-C-e--Eee---c----------c-c-CceEEeeCC--cEEEc
Q psy5697          49 RIKSAPG-GNRTR--GLELTRQTRYE-PSQLGWRFSN-N-T--VIA---Y----------V-K-DLRIALSNG--SLMFP  103 (145)
Q Consensus        49 ~i~~p~~-~~~~g--~~L~C~a~G~P-~P~i~W~~~d-g-~--~i~---~----------~-~-~~~~~~~~G--sL~i~  103 (145)
                      +.+.|.+ +...|  ++|.|...+.- ...+.|++.. | .  .+.   .          . + +......+.  +|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            4566766 33333  99999986643 5679999743 1 1  110   0          0 0 011111222  69998


Q ss_pred             CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697         104 PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus       104 ~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++..+      |+|+|.|.+...
T Consensus        83 ~l~~~------Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRE------NEGYYFCSALSN   99 (114)
T ss_dssp             SCCGG------GCEEEEEEEEET
T ss_pred             cCCCC------CCEEEeEeEcCC
Confidence            88765      899999998643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.37  E-value=0.00038  Score=45.61  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=37.2

Q ss_pred             CeEEEeeEeccC-----CCEEEEEcc-CCeEee-----------cccCceEE-eeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYE-----PSQLGWRFS-NNTVIA-----------YVKDLRIA-LSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P-----~P~i~W~~~-dg~~i~-----------~~~~~~~~-~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|.+++..     ..-+.|++. .|+...           ..+..... ..+.  .|.|.++..+      |+|+|
T Consensus        18 svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e------DsAvY   91 (112)
T d1ncwl1          18 PASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE------DLGVY   91 (112)
T ss_dssp             CEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEE
T ss_pred             CEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC------cCEeE
Confidence            399999976544     245999864 232211           01111111 1222  6999888766      89999


Q ss_pred             EEEEEcCCC
Q psy5697         120 RCRASNEAG  128 (145)
Q Consensus       120 ~C~A~N~~G  128 (145)
                      .|.+.+...
T Consensus        92 YC~~~~~~~  100 (112)
T d1ncwl1          92 YCWQGTHFP  100 (112)
T ss_dssp             EEEECSSSS
T ss_pred             EEEcCCCcc
Confidence            996655443

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.37  E-value=0.00061  Score=42.89  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=39.4

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeE---ee--------cccCceE-EeeCC---cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTV---IA--------YVKDLRI-ALSNG---SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~---i~--------~~~~~~~-~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .++|.|...+.....+.|++. .|+.   |-        ...+... ....+   +|.|.++..+      |+|+|.|.+
T Consensus         3 ~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~------Dsg~YyCa~   76 (94)
T d2gj6d1           3 IASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPS------DSATYLCAV   76 (94)
T ss_dssp             CEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGG------GCEEEEEEE
T ss_pred             cEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccC------cCccceeeE
Confidence            389999988888899999873 3321   11        0111111 11222   6999888765      899999988


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      ...
T Consensus        77 ~~~   79 (94)
T d2gj6d1          77 TTD   79 (94)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            754

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.35  E-value=0.00028  Score=46.05  Aligned_cols=59  Identities=17%  Similarity=0.062  Sum_probs=37.8

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeE---e-ec-------ccCceEE-eeC--CcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTV---I-AY-------VKDLRIA-LSN--GSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~---i-~~-------~~~~~~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.....-...+.|++. .|+.   + ..       .+..... ..+  -+|.|.++..+      |+|+|.|.+..
T Consensus        19 vtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~------DSa~YyCA~~~   92 (109)
T d1mqkl_          19 VTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE------DFGSYYCQHHY   92 (109)
T ss_dssp             EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEECS
T ss_pred             EEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc------CCeeEEEeeeC
Confidence            99999988777778999974 2321   1 10       0111111 122  27999887765      89999998763

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00053  Score=44.09  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=37.3

Q ss_pred             eEEEeeEecc-CC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.|+|. |. -.|+|. +||+.+.... .......+|+..+..   +..+      +.+.|+|.+.=+
T Consensus        22 ~tL~C~~~gFyP~~i~v~W~-~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~------~~~~ytC~V~H~   86 (100)
T d1k5nb_          22 NFLNCYVSGFHPSDIEVDLL-KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPT------EKDEYACRVNHV   86 (100)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECTTCEECCCEECTTSCEEEEEEEEECCC------SSCCEEEEEECT
T ss_pred             EEEEEEECccCCCCcEEEEE-ECCEecCCccccceecCCCCcEEEEEEeEECCC------CCCEEEEEEEeC
Confidence            7899999997 43 378997 5888875321 112445667544332   2222      466899999654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.33  E-value=0.00062  Score=44.07  Aligned_cols=60  Identities=10%  Similarity=0.139  Sum_probs=38.3

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +.|.|...+.-...+.|++.. |+.   +-        ..+.......++   +|.|.++..+      |+|+|.|.+..
T Consensus        21 vtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~------Dsa~YyCA~~~   94 (109)
T d1bwwa_          21 VTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE------DIATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEECS
T ss_pred             EEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC------cCceEEEeecC
Confidence            999999988777789999742 221   11        011111111222   6999887765      89999998765


Q ss_pred             C
Q psy5697         126 E  126 (145)
Q Consensus       126 ~  126 (145)
                      .
T Consensus        95 ~   95 (109)
T d1bwwa_          95 S   95 (109)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.33  E-value=0.00053  Score=44.75  Aligned_cols=59  Identities=17%  Similarity=0.128  Sum_probs=35.6

Q ss_pred             CeEEEeeEeccC-----CCEEEEEcc-CCeEe----e-------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYE-----PSQLGWRFS-NNTVI----A-------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P-----~P~i~W~~~-dg~~i----~-------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|.++|.-     ...+.|++. .|+..    .       ..+.......++   +|.|.++..+      |+|+|
T Consensus        18 svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~------DsAvY   91 (112)
T d1mjul1          18 SVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE------DVGVY   91 (112)
T ss_dssp             CEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG------GCEEE
T ss_pred             CEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc------CCceE
Confidence            399999987742     457999864 23221    1       111111112222   6899888766      89999


Q ss_pred             EEEEE
Q psy5697         120 RCRAS  124 (145)
Q Consensus       120 ~C~A~  124 (145)
                      .|...
T Consensus        92 yCa~~   96 (112)
T d1mjul1          92 YCLQH   96 (112)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00024  Score=45.00  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=35.7

Q ss_pred             eEEEeeEecc-CCC-EEEEEccCCeEeecccCceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRY-EPS-QLGWRFSNNTVIAYVKDLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|+|. |.. .|+|+ +||..+...........+|+..+..   +..+      +...|.|.+.=+
T Consensus        18 ~~L~C~~~gF~P~~i~v~W~-~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~------~~~~ytC~V~H~   81 (91)
T d3frua1          18 SVLTCAAFSFYPPELKFRFL-RNGLASGSGNCSTGPNGDGSFHAWSLLEVKRG------DEHHYQCQVEHE   81 (91)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCCCEEEEEECSSSCEEEEEEEEEETT------CGGGEEEEEECT
T ss_pred             EEEEEEEEeEECCCCEEEEE-ECCEeCCccCccceecCCCCEeEEEEEEECCC------CCCEEEEEEEeC
Confidence            8999999994 653 89997 5887765322112234455443332   2112      346799999643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.31  E-value=0.0006  Score=44.48  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             CeEEEeeEecc-CC---CEEEEEccC-CeEe----ec-------cc-CceEEeeC--CcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRY-EP---SQLGWRFSN-NTVI----AY-------VK-DLRIALSN--GSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~-P~---P~i~W~~~d-g~~i----~~-------~~-~~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .++|.|.+++. ..   -.+.|++.. |+..    ..       .+ +......+  -+|.|.++..+      |+|+|.
T Consensus        18 svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~------DsA~Yy   91 (111)
T d2gsia1          18 PATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE------DAATYY   91 (111)
T ss_dssp             CEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc------CCceEE
Confidence            39999987643 22   248998743 3221    10       11 11111121  26899888765      899999


Q ss_pred             EEEEcCCC
Q psy5697         121 CRASNEAG  128 (145)
Q Consensus       121 C~A~N~~G  128 (145)
                      |.+.+...
T Consensus        92 Ca~~~~~~   99 (111)
T d2gsia1          92 CSHIRELP   99 (111)
T ss_dssp             EEECSSSS
T ss_pred             EEECCCCC
Confidence            98765543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.30  E-value=0.00065  Score=44.49  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeE---ee---------cccCceE-Eee---CCcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTV---IA---------YVKDLRI-ALS---NGSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~---i~---------~~~~~~~-~~~---~GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|...+. ...+.|++. .|+.   +-         ...+... ...   ..+|.|.++..+      |+|+|.|.+
T Consensus        18 vtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~   90 (115)
T d1ogad1          18 LTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG------DTGLYLCAG   90 (115)
T ss_dssp             EEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG------GCEEEEEEE
T ss_pred             EEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc------ceeeEcccc
Confidence            9999998774 458999874 2321   10         0111111 111   127999888765      899999998


Q ss_pred             EcCCCce---EEEEEEEEec
Q psy5697         124 SNEAGVI---LSRFVHVKAD  140 (145)
Q Consensus       124 ~N~~G~~---~s~~v~v~~~  140 (145)
                      ....+..   -...++|+..
T Consensus        91 ~~~~~~~~FG~GT~LtV~~~  110 (115)
T d1ogad1          91 AGSQGNLIFGKGTKLSVKPN  110 (115)
T ss_dssp             ECTTSSEEECCCEEEEEECC
T ss_pred             cCCCCCcEECCCEEEEEecC
Confidence            8665543   2457777643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00068  Score=43.27  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=35.9

Q ss_pred             eEEEeeEecc-C-CCEEEEEccCCeEeecccCc-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRY-E-PSQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P-~P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.+.|. | .-.|+|+ +||+.+...... .....+|+..+..   +..+      +.+.|.|.++=.
T Consensus        21 ~tL~C~v~gf~P~~i~V~W~-~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~------~~~~ytC~V~H~   85 (99)
T d1lk2b_          21 NILNCYVTQFHPPHIEIQML-KNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPT------ETDTYACRVKHD   85 (99)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECTTCEEEEEEECTTCCEEEEEEEEECCC------SSCCEEEEEECT
T ss_pred             EEEEEEEEEEECCCcEEEEe-eCCeecCCcEECceeECCCCCEEEEEEeEecCc------CCCEEEEEEEeC
Confidence            8999999996 3 3479997 588876532211 1234556543332   2222      456899999643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00034  Score=44.57  Aligned_cols=64  Identities=9%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             cCeEEEeeEeccC----CCEEEEEccCCeEee-c----------ccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          59 TRGLELTRQTRYE----PSQLGWRFSNNTVIA-Y----------VKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        59 ~g~~L~C~a~G~P----~P~i~W~~~dg~~i~-~----------~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.++|.|......    .-.+.|.+ ++..+. .          ..+......+|  +|.|.+++.+      |+|.|.|
T Consensus        10 ~~a~L~C~~~~~~~~~~~~~v~w~~-~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~------D~G~Y~C   82 (105)
T d1dr9a1          10 EVATLSCGHNVSVEELAQTRIYWQK-EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS------DEGTYEC   82 (105)
T ss_dssp             SCEEECCSCCCCTTHHHHCEEEEEE-TTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGG------GCEEEEE
T ss_pred             CCEEEEEEECCcccceeEEEEEEEe-cceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChH------HCeEEEE
Confidence            3499999864322    13678865 443321 1          11122333334  8999988766      8999999


Q ss_pred             EEEcCCCc
Q psy5697         122 RASNEAGV  129 (145)
Q Consensus       122 ~A~N~~G~  129 (145)
                      .+.+.-+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            98866443

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.001  Score=43.36  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CeEEEeeEecc-CCCEEEEEcc-CCe-E--ee---------cccC-ceE-EeeCC---cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFS-NNT-V--IA---------YVKD-LRI-ALSNG---SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~-dg~-~--i~---------~~~~-~~~-~~~~G---sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|...+. ....+.|++. .|+ +  +-         ..++ ... ...++   +|.|.++..+      |+|.|.
T Consensus        16 ~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~------Dsg~Yy   89 (114)
T d3bp5a1          16 NATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN------DSGIYL   89 (114)
T ss_dssp             CEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC------CCeEEE
Confidence            39999998654 4568999974 232 1  10         1111 111 12232   5889888765      899999


Q ss_pred             EEEEcCC
Q psy5697         121 CRASNEA  127 (145)
Q Consensus       121 C~A~N~~  127 (145)
                      |.+...-
T Consensus        90 Ca~~~~~   96 (114)
T d3bp5a1          90 CGAISLH   96 (114)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9887553

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.28  E-value=0.00034  Score=45.50  Aligned_cols=63  Identities=13%  Similarity=-0.012  Sum_probs=38.5

Q ss_pred             eEEEeeEe-ccCCCEEEEEccC-CeE---ee---cc------c-Cce-EEeeCC---cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQT-RYEPSQLGWRFSN-NTV---IA---YV------K-DLR-IALSNG---SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~-G~P~P~i~W~~~d-g~~---i~---~~------~-~~~-~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      ++|.|... +.....+.|++.. |..   +-   ..      . +.+ ....++   +|.|.++..+      |+|.|.|
T Consensus        18 VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsg~YyC   91 (114)
T d2ak4d1          18 VTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV------DSAVYFC   91 (114)
T ss_dssp             EEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG------GCEEEEE
T ss_pred             EEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc------cCCCceE
Confidence            99999854 4456789998642 221   11   00      0 011 122223   6899887665      8999999


Q ss_pred             EEEcCCCc
Q psy5697         122 RASNEAGV  129 (145)
Q Consensus       122 ~A~N~~G~  129 (145)
                      .+....+.
T Consensus        92 a~~~~~~~   99 (114)
T d2ak4d1          92 ALSGFYNT   99 (114)
T ss_dssp             EEECSBTT
T ss_pred             eCCCCCCC
Confidence            88776553

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.27  E-value=0.00093  Score=42.77  Aligned_cols=60  Identities=13%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             CeEEEeeEecc-C-CCEEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRY-E-PSQLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~-P-~P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ..+|.|.|+|. | .-.|+|+ +||+.+....  .......+|+..+.   .+..+      +...|.|.+.-+
T Consensus        21 ~~tL~C~~~gFyP~~i~v~W~-~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~------~~~~ytC~V~H~   87 (99)
T d1uvqa1          21 PNTLICLVDNIFPPVVNITWL-SNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPS------ADEIYDCKVEHW   87 (99)
T ss_dssp             CEEEEEEEEEECSSCCEEEEE-ETTEEECTTEEECCCEECTTSCEEEEEEEEECCC------TTCCEEEEEECT
T ss_pred             cEEEEEEEEEEECCCCEEEEE-ECCEeccCCcEecceEECCCCCEEEEEEEEEcCC------CCCEEEEEEEeC
Confidence            37899999997 3 3579997 5888875321  11133445553332   22222      345799999765

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.23  E-value=0.0011  Score=42.66  Aligned_cols=59  Identities=10%  Similarity=0.209  Sum_probs=35.9

Q ss_pred             eEEEeeEecc-CC-CEEEEEccCCeEeeccc--CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVK--DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.|+|. |. -.|+|+ +||+.+....  .......+|+.....   +...      +...|.|.++-+
T Consensus        22 ~tL~C~v~gF~P~~i~v~W~-~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~------~~~~ytC~V~H~   87 (101)
T d1fnga1          22 NILICFIDKFSPPVVNVTWL-RNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPS------TDDFYDCEVDHW   87 (101)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEEECSSEEECCCEECSSSCEEEEEEEEECCC------TTCCEEEEEECT
T ss_pred             EEEEEEEEeEECCCCEEEEE-ECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCC------CCCEEEEEEEEC
Confidence            7899999997 53 489997 5888875311  111234455433322   2222      345799999765

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.00017  Score=47.99  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---eec--------ccCceE-EeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IAY--------VKDLRI-ALSNG--SLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~~--------~~~~~~-~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|..++.-...+.|++.. |+.   +-.        ...... ...+.  +|.|.++..+      |+|+|.|.+.+
T Consensus        19 vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~------DsavYyCa~~~   92 (119)
T d1f3rb2          19 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE------DVATYFCYQYN   92 (119)
T ss_dssp             EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG------GCSEEEEEEES
T ss_pred             EEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccC------CCeEEEeeccC
Confidence            999999887666789999742 221   110        011111 12222  6999887665      89999998765

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.20  E-value=0.00042  Score=44.58  Aligned_cols=60  Identities=17%  Similarity=0.037  Sum_probs=37.9

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee------------cccCceEE-ee-C--CcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA------------YVKDLRIA-LS-N--GSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~------------~~~~~~~~-~~-~--GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|...+.-...+.|++.. |+...            ........ .. +  -+|.|.++..+      |+|+|.|.
T Consensus        16 ~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa   89 (110)
T d1u3ha1          16 TAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG------DSATYFCA   89 (110)
T ss_dssp             CEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT------SCSEEEEC
T ss_pred             CEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC------CceeEeee
Confidence            3999999877666789999742 32111            00011111 11 1  26999888766      89999999


Q ss_pred             EEc
Q psy5697         123 ASN  125 (145)
Q Consensus       123 A~N  125 (145)
                      +.-
T Consensus        90 ~~~   92 (110)
T d1u3ha1          90 ASA   92 (110)
T ss_dssp             CEE
T ss_pred             ecC
Confidence            863

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.18  E-value=0.00096  Score=42.55  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecc--cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYV--KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~--~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.|.|.-++  .|+|+ +||..+...  ........+|+........-..   .+...|+|.++-+
T Consensus        21 ~tL~C~v~~F~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~---~~~~~ytC~V~H~   86 (98)
T d1d5mb1          21 NLLVCSVNGFYPGSIEVRWF-RNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHP   86 (98)
T ss_dssp             CEEEEEEEEEBSSCCEEEEE-ETTEECCSSEEECCCEECSSSCEEEEEEEECCC---CTTCEEEEEEECT
T ss_pred             eEEEEEEeeeECCCcEEEEE-ECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcC---CCCCEEEEEEEEC
Confidence            6899999995444  79997 588776432  1112334566544332111111   1466899999876

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.18  E-value=0.00034  Score=45.77  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=39.0

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---e-ec--------ccCceEE--ee--CCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---I-AY--------VKDLRIA--LS--NGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i-~~--------~~~~~~~--~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      .++|.|.......+.+.|+|.. |+.   + ..        ..+....  ..  .-+|.|..++.+      |+|.|.|.
T Consensus        18 ~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsg~YyCa   91 (115)
T d1lp9e1          18 PVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS------DSALYYCA   91 (115)
T ss_dssp             CEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG------GCEEEEEE
T ss_pred             CEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc------cCccceEE
Confidence            3999999888888999998642 221   1 00        0111111  11  126999887765      89999998


Q ss_pred             EEcC
Q psy5697         123 ASNE  126 (145)
Q Consensus       123 A~N~  126 (145)
                      +...
T Consensus        92 ~~~~   95 (115)
T d1lp9e1          92 LFLA   95 (115)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            7654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.18  E-value=0.00052  Score=44.34  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             CeEEEeeEecc-CCCEEEEEccC-CeE---ee-c-------ccCc-eEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRY-EPSQLGWRFSN-NTV---IA-Y-------VKDL-RIALSNG--SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~-P~P~i~W~~~d-g~~---i~-~-------~~~~-~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .+.|.|...+. ....+.|++.. |+.   +- .       .... .....+.  +|.|.++..+      |+|+|.|.+
T Consensus        18 tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~------Dsa~YyCa~   91 (108)
T d2fx7l1          18 RATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE------DFAVYYCQQ   91 (108)
T ss_dssp             CEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEE
T ss_pred             CEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec------ccEEEeeec
Confidence            39999998654 34578998743 321   11 0       0011 1111222  6999888765      899999988


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      .+.
T Consensus        92 ~~~   94 (108)
T d2fx7l1          92 YGQ   94 (108)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0008  Score=42.47  Aligned_cols=60  Identities=13%  Similarity=0.150  Sum_probs=35.3

Q ss_pred             CeEEEeeEec-cCC-CEEEEEccCCeEeecccC-ceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTR-YEP-SQLGWRFSNNTVIAYVKD-LRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .++|.|.|.| +|. -.|+|+ +||+.+..... ......+|+.....   +...      +...|.|.+.-+
T Consensus        17 ~~tL~C~~~gFyP~~i~v~W~-~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~------~~~~ytC~V~H~   82 (94)
T d1t7va1          17 KKKLKCLAYDFYPGKIDVHWT-RAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQ------DTAPYSCHVQHS   82 (94)
T ss_dssp             CEEEEEEEEEEBSSCEEEEEE-ETTEECCCSEEEEEEETTTTEEEEEEEEEECTT------CCSCEEEEEEET
T ss_pred             CEEEEEEEEeEECCCCEEEEE-ECCEECCCcEEeeeecCCCCeEEEEEEeEeCCC------CCCEEEEEEEEC
Confidence            3899999999 565 489997 58877643211 11223344333322   2222      345799999754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0017  Score=41.30  Aligned_cols=25  Identities=12%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             eCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          96 SNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        96 ~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.+|.|.+++.+      |+|.|.|.....
T Consensus        67 ~~~sL~I~~v~~~------D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIK------DKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGG------GCEEEEEEEEEE
T ss_pred             CeEEEEECCCChh------HCEEEEEEEEec
Confidence            3458999998776      899999998644

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.14  E-value=0.0017  Score=41.86  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             eEEEeeEecc-CCCEEEEEcc-CCeE---eec-------ccCce-EEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          61 GLELTRQTRY-EPSQLGWRFS-NNTV---IAY-------VKDLR-IALSNG---SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        61 ~~L~C~a~G~-P~P~i~W~~~-dg~~---i~~-------~~~~~-~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      ++|.|...+. ....+.|++. .|+.   |-.       ....+ ....++   +|.|.++..+      |+|+|.|.+.
T Consensus        16 vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   89 (110)
T d2esvd1          16 ANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLR------DTAVYYCIVV   89 (110)
T ss_dssp             EEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGG------GCEEEEEEEE
T ss_pred             EEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccC------CceEEEEEEe
Confidence            9999987653 4567999974 2322   110       00111 111222   6999887655      8999999876


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      ..
T Consensus        90 ~~   91 (110)
T d2esvd1          90 RS   91 (110)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.13  E-value=0.0011  Score=42.95  Aligned_cols=62  Identities=15%  Similarity=0.084  Sum_probs=38.7

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeE---ee-c--------ccCceEE-eeC---CcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTV---IA-Y--------VKDLRIA-LSN---GSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~---i~-~--------~~~~~~~-~~~---GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|.....-...+.|++. .|+.   +- .        ..+.... ..+   -.|.|.++..+      |+|+|.|.+
T Consensus        18 vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~------Dsa~YyCA~   91 (110)
T d1ac6a_          18 LTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES------DSAVYYCAL   91 (110)
T ss_dssp             EEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG------GCEEEEEEE
T ss_pred             EEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC------CCcccceee
Confidence            89999987766678999974 2322   11 0        0111111 122   26888877665      899999988


Q ss_pred             EcCCC
Q psy5697         124 SNEAG  128 (145)
Q Consensus       124 ~N~~G  128 (145)
                      .....
T Consensus        92 ~~~~~   96 (110)
T d1ac6a_          92 SGGNN   96 (110)
T ss_dssp             EETTT
T ss_pred             cCCCC
Confidence            76543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.13  E-value=0.0019  Score=42.05  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=37.4

Q ss_pred             CeEEEeeEeccC-----CCEEEEEccC-CeEee-----------cccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYE-----PSQLGWRFSN-NTVIA-----------YVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P-----~P~i~W~~~d-g~~i~-----------~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|..++.-     ...+.|++.. |+...           ..+.......++   +|.|.++..+      |+|+|
T Consensus        19 svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~------DsavY   92 (113)
T d1n4xl_          19 QASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE------DLGIY   92 (113)
T ss_dssp             CEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG------GCEEE
T ss_pred             CEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc------cCEEE
Confidence            399999986543     3579998642 32211           011111111222   8999888766      89999


Q ss_pred             EEEEEcCC
Q psy5697         120 RCRASNEA  127 (145)
Q Consensus       120 ~C~A~N~~  127 (145)
                      .|.+.+..
T Consensus        93 yCa~~~~~  100 (113)
T d1n4xl_          93 YCFQGSHF  100 (113)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCCC
Confidence            99766543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.13  E-value=0.00082  Score=43.83  Aligned_cols=59  Identities=17%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             eEEEeeEecc---C---CCEEEEEccC-CeE---ee--------cccCc-eEEeeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          61 GLELTRQTRY---E---PSQLGWRFSN-NTV---IA--------YVKDL-RIALSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        61 ~~L~C~a~G~---P---~P~i~W~~~d-g~~---i~--------~~~~~-~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +.|.|.+++.   .   ...+.|++.. |+.   +.        ..+.. .....+.  +|.|.++..+      |+|+|
T Consensus        19 vtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~------Dsa~Y   92 (113)
T d1q9ra1          19 VTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE------DLAVY   92 (113)
T ss_dssp             EEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG------GCEEE
T ss_pred             EEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC------CCeEE
Confidence            9999987652   1   2459998742 221   11        01111 1222233  6999888765      89999


Q ss_pred             EEEEEc
Q psy5697         120 RCRASN  125 (145)
Q Consensus       120 ~C~A~N  125 (145)
                      .|.+.+
T Consensus        93 yCA~~~   98 (113)
T d1q9ra1          93 YCKQSY   98 (113)
T ss_dssp             EEEECS
T ss_pred             EecccC
Confidence            998754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.12  E-value=0.0007  Score=44.06  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             eEEEeeEeccCCCEEEEEccC-Ce-Ee---ecc------cCceEEe---e--CCcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NT-VI---AYV------KDLRIAL---S--NGSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~-~i---~~~------~~~~~~~---~--~GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      +.|.|...+ -...+.|++.. |. +.   ...      .......   .  ..+|.|.++..+      |+|+|.|.+.
T Consensus        19 vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   91 (113)
T d1h5ba_          19 SALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE------DSGTYFCAAE   91 (113)
T ss_dssp             EEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG------GCEEEEEEEE
T ss_pred             EEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh------HCEEEEEEec
Confidence            999999876 35689998743 22 11   000      1111111   1  126899888765      8999999987


Q ss_pred             cCCCce-----EEEEEEEE
Q psy5697         125 NEAGVI-----LSRFVHVK  138 (145)
Q Consensus       125 N~~G~~-----~s~~v~v~  138 (145)
                      ...|..     ....+.|.
T Consensus        92 ~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          92 ASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             CSSSSSSCEECCCEEEEEE
T ss_pred             CCCCCCeeEECcCEEEEEE
Confidence            655431     13456665

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.00079  Score=43.20  Aligned_cols=59  Identities=14%  Similarity=0.088  Sum_probs=35.7

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee--------cccCc-eEEeeCC--cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA--------YVKDL-RIALSNG--SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~--------~~~~~-~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|..+. ....+.|++.. |+.   +.        ..+.. .....+.  +|.|.++..+      |+|+|.|.+.
T Consensus        17 ~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~------Dsa~YyCa~~   89 (104)
T d1yqvl1          17 KVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETE------DAATYYCQQW   89 (104)
T ss_dssp             CEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEC
T ss_pred             CEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcc------cCCeEEEEec
Confidence            3999999755 45568999743 221   11        01111 1112222  6999888766      8999999764


Q ss_pred             c
Q psy5697         125 N  125 (145)
Q Consensus       125 N  125 (145)
                      +
T Consensus        90 ~   90 (104)
T d1yqvl1          90 G   90 (104)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.11  E-value=0.0012  Score=42.19  Aligned_cols=62  Identities=8%  Similarity=0.116  Sum_probs=37.9

Q ss_pred             CeEEEeeEecc-C-CCEEEEEccCCeEeecccCc--eEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTRY-E-PSQLGWRFSNNTVIAYVKDL--RIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G~-P-~P~i~W~~~dg~~i~~~~~~--~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .++|.|.|.|. | .-.|+|+ +||+.+......  .....+|+..+.   .+..+      +...|+|.+.-+.-
T Consensus        19 ~~tL~C~~~gFyP~~i~v~W~-~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~------~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          19 PVMLACYVWGFYPAEVTITWR-KNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPS------YGDTYTCVVEHIGA   87 (98)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEE-ETTEECCCCCSBCCCEECSSSCEEEEEEEEECCC------TTCCEEEEEECTTS
T ss_pred             cEEEEEEEEEEECCCCEEEEE-ECCEeccCCeEeCceEECCCCCEEEEEEeEcCCC------CCCEEEEEEEeCCC
Confidence            38999999997 3 5689997 588877532111  233445653332   22222      34579999987643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.11  E-value=0.00083  Score=42.82  Aligned_cols=85  Identities=7%  Similarity=-0.050  Sum_probs=48.5

Q ss_pred             CCCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          45 HYPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        45 ~~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .+|.+.-.|...+  +..++|.|+..- ..-.+.++| +|...............+   .+.|.++..+      |.|.|
T Consensus         1 ~KPsLsa~P~~~V~~G~~VTl~C~~~~-~~~~f~L~k-eg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~------~~G~Y   72 (96)
T d1nkra1           1 RKPSLLAHPGPLVKSEETVILQCWSDV-MFEHFLLHR-EGMFNDTLRLIGEHHDGVSKANFSISRMTQD------LAGTY   72 (96)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEEESS-CCSEEEEEE-ESSSCEEEEEECEEETTEEEEEEEESSCCGG------GCEEE
T ss_pred             CCCEEEeeCCCccCCCCcEEEEECCCC-CCCEEEEEE-CCCcCCceeeeeeecCCceEEEEEEcccCcc------cCeEE
Confidence            3677777776533  334999999653 567788875 443211000000111122   5888887665      89999


Q ss_pred             EEEEEcCC----CceEEEEEEE
Q psy5697         120 RCRASNEA----GVILSRFVHV  137 (145)
Q Consensus       120 ~C~A~N~~----G~~~s~~v~v  137 (145)
                      +|.-....    .+..|..+.|
T Consensus        73 ~C~y~~~~~p~~wS~pSdpLeL   94 (96)
T d1nkra1          73 RCYGSVTHSPYQVSAPSDPLDI   94 (96)
T ss_dssp             EEEEEBTTBTTCCCCCCCCEEE
T ss_pred             EEEEEcCCCCCcccCCCCCEEE
Confidence            99876442    2334555544

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.10  E-value=0.00094  Score=42.69  Aligned_cols=84  Identities=17%  Similarity=-0.010  Sum_probs=46.4

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +|.+.-.|...+  +..++|.|+..- +.-.+.|+| ||....... .......+  .+.|..+...      |+|.|+|
T Consensus         6 kPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~k-~g~~~~~~~-~~~~~~~~~~~f~~~~~~~~------~~G~Y~C   76 (99)
T d1nkra2           6 KPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSR-EGEAHERRL-PAGPKVNGTFQADFPLGPAT------HGGTYRC   76 (99)
T ss_dssp             CCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEE-TTCSSCEEE-ECEEEETTEEEEEEEEEECC------SCEEEEE
T ss_pred             CCEEEEeCCCcccCCCeEEEEECCCC-CccEEEEEE-CCCccccEE-EccccCCccEEEEEeccccc------cCEEEEE
Confidence            577777776633  333999998643 667888875 664321100 01112222  3455555433      7999999


Q ss_pred             EEEcCC----CceEEEEEEEE
Q psy5697         122 RASNEA----GVILSRFVHVK  138 (145)
Q Consensus       122 ~A~N~~----G~~~s~~v~v~  138 (145)
                      ......    .+..|..+.+.
T Consensus        77 ~y~~~~~p~~wS~~SdpLeL~   97 (99)
T d1nkra2          77 FGSFHDSPYEWSKSSDPLLVS   97 (99)
T ss_dssp             EEEETTEEEEECCCCCCEEEE
T ss_pred             EeecCCCCCCccCCCCCEEEE
Confidence            865443    23345555543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.08  E-value=0.0013  Score=42.39  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=36.5

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee-----------cccCc-eEEe---eCCcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA-----------YVKDL-RIAL---SNGSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-----------~~~~~-~~~~---~~GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .++|.|..++ -...+.|++.. |+.   +-           ..+.. ....   .+.+|.|.++..+      |+|+|.
T Consensus        18 ~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~Yy   90 (110)
T d2aq2a1          18 KVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPS------QTSVYF   90 (110)
T ss_dssp             CEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHh------hCEEEE
Confidence            3999999865 46789999742 221   11           00111 1111   1236888877655      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+...
T Consensus        91 Ca~~~~   96 (110)
T d2aq2a1          91 CASGGG   96 (110)
T ss_dssp             EEEEET
T ss_pred             EeeCCC
Confidence            987653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.08  E-value=0.002  Score=42.16  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=42.5

Q ss_pred             CCCCEEEEcCCCCCccCeEEEeeEeccC--CCEEEEEccC-CeE---eec--------cc-CceEEee--CCcEEEcCCC
Q psy5697          44 EHYPFRIKSAPGGNRTRGLELTRQTRYE--PSQLGWRFSN-NTV---IAY--------VK-DLRIALS--NGSLMFPPFP  106 (145)
Q Consensus        44 ~~~P~~i~~p~~~~~~g~~L~C~a~G~P--~P~i~W~~~d-g~~---i~~--------~~-~~~~~~~--~GsL~i~~~~  106 (145)
                      .++|.+...|    +..++|.|.++|.-  ...+.|++.. |+.   +..        .+ +......  +.+|.|.++.
T Consensus         5 tQ~ps~~v~~----G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   80 (114)
T d2rhea_           5 TQPPSASGTP----GQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLE   80 (114)
T ss_dssp             BCCSEEEECT----TCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCcEEeCC----CCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccC
Confidence            3445544443    23399999987754  5679999753 221   110        01 1111112  2379998887


Q ss_pred             CCCCCCCCCCeEEEEEEEc
Q psy5697         107 ETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus       107 ~~~~~~~~d~G~Y~C~A~N  125 (145)
                      .+      |+|+|.|.+.-
T Consensus        81 ~~------DsA~YyCA~~~   93 (114)
T d2rhea_          81 SE------DEADYYCAAWN   93 (114)
T ss_dssp             GG------GCEEEEEEEEE
T ss_pred             cc------cCceEEEeecC
Confidence            65      89999998864

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00095  Score=43.55  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=36.4

Q ss_pred             eEEEeeEeccCCC---EEEEEcc-CCeEee-----------cccC-ceEEee--CCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYEPS---QLGWRFS-NNTVIA-----------YVKD-LRIALS--NGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P~P---~i~W~~~-dg~~i~-----------~~~~-~~~~~~--~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +.|.|..++...-   .+.|++. .|+...           ..+. ......  +.+|.|.++..+      |+|+|.|.
T Consensus        18 vtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~------Dsa~YyCa   91 (110)
T d1oaql_          18 VTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTE------DEAIYFCA   91 (110)
T ss_dssp             EEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG------GCEEEEEE
T ss_pred             EEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCcc------ccEeEEEE
Confidence            9999999764432   2889863 233221           0111 111111  227999888765      89999999


Q ss_pred             EEcC
Q psy5697         123 ASNE  126 (145)
Q Consensus       123 A~N~  126 (145)
                      +...
T Consensus        92 ~~~~   95 (110)
T d1oaql_          92 LWYS   95 (110)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            7754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.01  E-value=0.0028  Score=40.92  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=37.7

Q ss_pred             eEEEeeEeccC---CCEEEEEcc-CCeEee---c--------ccCc-eEEe--eCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          61 GLELTRQTRYE---PSQLGWRFS-NNTVIA---Y--------VKDL-RIAL--SNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        61 ~~L~C~a~G~P---~P~i~W~~~-dg~~i~---~--------~~~~-~~~~--~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      ++|.|...+.-   ...+.|+++ .|+...   .        .... ....  .+-+|.|.+++.+      |+|+|.|.
T Consensus        18 vtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------Dsa~YyCa   91 (112)
T d1lgva1          18 ITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAE------DEADYYCS   91 (112)
T ss_dssp             EEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGG------GCEEEEEE
T ss_pred             EEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccc------cCEEEEEe
Confidence            99999987643   356999973 232211   0        0011 1111  1226999887665      89999998


Q ss_pred             EEcCCC
Q psy5697         123 ASNEAG  128 (145)
Q Consensus       123 A~N~~G  128 (145)
                      +.+..+
T Consensus        92 ~~~~~~   97 (112)
T d1lgva1          92 SYDGSS   97 (112)
T ss_dssp             EECSSS
T ss_pred             eecCCC
Confidence            876544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.99  E-value=0.00072  Score=43.85  Aligned_cols=61  Identities=8%  Similarity=0.018  Sum_probs=36.8

Q ss_pred             CeEEEeeEeccC-CCEEEEEcc-CCeEee----c-----cc-Cce-EEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          60 RGLELTRQTRYE-PSQLGWRFS-NNTVIA----Y-----VK-DLR-IALSNG---SLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        60 g~~L~C~a~G~P-~P~i~W~~~-dg~~i~----~-----~~-~~~-~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      .++|.|...|.. ...+.|++. .|+.+.    .     .. ..+ ....++   .|.|..+..+      |+|.|.|.+
T Consensus        15 svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------Dsa~YyCa~   88 (112)
T d1kgcd1          15 PVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLR------DAAVYYCIL   88 (112)
T ss_dssp             CEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGG------GCEEEEEEC
T ss_pred             CEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccc------cceeEeeeE
Confidence            399999987655 466999974 232211    0     00 011 122222   6888877654      899999987


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      .-.
T Consensus        89 ~~~   91 (112)
T d1kgcd1          89 PLA   91 (112)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.98  E-value=0.0017  Score=42.03  Aligned_cols=60  Identities=15%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             eEEEeeEeccC--CCEEEEEcc-CCeE---eec--------ccC-ceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYE--PSQLGWRFS-NNTV---IAY--------VKD-LRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~-dg~~---i~~--------~~~-~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      +.|.|..++.-  ...+.|++. .|+.   +..        ... ......+  -+|.|.+++.+      |+|+|.|.+
T Consensus        18 vtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~------Dsa~YyCA~   91 (111)
T d1rzfl1          18 VTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTG------DEADYYCGT   91 (111)
T ss_dssp             EEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGG------GCSEEEEEE
T ss_pred             EEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccc------cCcceEEee
Confidence            99999987643  356999864 2221   110        011 1111112  27999888766      899999988


Q ss_pred             EcC
Q psy5697         124 SNE  126 (145)
Q Consensus       124 ~N~  126 (145)
                      ...
T Consensus        92 ~~~   94 (111)
T d1rzfl1          92 WDS   94 (111)
T ss_dssp             EET
T ss_pred             cCC
Confidence            644

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00047  Score=44.57  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=22.8

Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      +|.|.+++.+      |+|.|.|.+.+. |......+.|.+
T Consensus        75 sL~I~~l~~~------DsG~Y~C~v~~~-~~~~~~~v~L~V  108 (116)
T d1xeda_          75 VVNIAQLSQD------DSGRYKCGLGIN-SRGLSFDVSLEV  108 (116)
T ss_dssp             EEEECSCCGG------GCEEEEEEESCG-GGCCEEEEEEEE
T ss_pred             EEEEhhhCcC------CCEEEEEEEEcC-CCCceEeEEEEE
Confidence            7999888766      899999987543 333333455543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00072  Score=42.88  Aligned_cols=82  Identities=15%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             CCEEEEcCCCCCcc--CeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe-eCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPGGNRT--RGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL-SNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~~~~~--g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~-~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.+-..|...+..  .++|.|+... +.-.+.|+| ||..-..   .+... ....+.|.++..+      |+|.|+|.
T Consensus         4 kPsLsa~P~~~V~~G~~VTL~C~~~~-~~~~f~L~K-eg~~~~~---~~~~~~~~a~F~i~~v~~~------~~G~Y~C~   72 (93)
T d1olla2           4 TPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLK-EGRSSHV---QRGYGKVQAEFPLGPVTTA------HRGTYRCF   72 (93)
T ss_dssp             CCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEE-ESSSCEE---EEEECSSEEEEEEEECCGG------GCEEEEEE
T ss_pred             CCEEEEeCCCcccCCCcEEEEECCCC-CCCEEEEEE-CCCccce---eecCCCceeEEEecccChh------cCceEEEE
Confidence            46666667653333  3999998643 567888875 5543110   01111 1126788777655      89999997


Q ss_pred             EEc-CC-CceEEEEEEEE
Q psy5697         123 ASN-EA-GVILSRFVHVK  138 (145)
Q Consensus       123 A~N-~~-G~~~s~~v~v~  138 (145)
                      ... .. -+..|..+.+.
T Consensus        73 ~~~~~~~wS~~SdpLeL~   90 (93)
T d1olla2          73 GSYNNHAWSFPSEPVKLL   90 (93)
T ss_dssp             CEEETTEECCCCCCEEEE
T ss_pred             eECCCCCcCCCCCCEEEE
Confidence            533 22 22345544443

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0038  Score=39.66  Aligned_cols=73  Identities=14%  Similarity=0.062  Sum_probs=41.1

Q ss_pred             CeEEEeeEecc--CCCEEEEEcc-CCeE---e-ec-------ccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRY--EPSQLGWRFS-NNTV---I-AY-------VKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~--P~P~i~W~~~-dg~~---i-~~-------~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|...+.  ....+.|++. .+..   + ..       ..+....   ..++  +|.|.+++.+      |+|.|.
T Consensus        13 svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~------DsG~Y~   86 (108)
T d1hkfa_          13 TLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREE------DSGHYW   86 (108)
T ss_dssp             CEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGG------GCEEEE
T ss_pred             CEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCC------CCEEEE
Confidence            39999986433  2457889863 2221   1 10       0011111   2234  6888888765      899999


Q ss_pred             EEEEcCCCce--EEEEEEEE
Q psy5697         121 CRASNEAGVI--LSRFVHVK  138 (145)
Q Consensus       121 C~A~N~~G~~--~s~~v~v~  138 (145)
                      |.........  ....+.|.
T Consensus        87 C~v~~~~~~~~~~~~~~~l~  106 (108)
T d1hkfa_          87 CRIYRPSDNSVSKSVRFYLV  106 (108)
T ss_dssp             EEEECTTTCCEEEEEEEEEE
T ss_pred             EEEecCCCCcEEEeeEEEEE
Confidence            9887554433  33344443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.93  E-value=0.00047  Score=44.84  Aligned_cols=60  Identities=12%  Similarity=0.113  Sum_probs=37.3

Q ss_pred             CeEEEeeEeccCCCEEEEEcc-CCeEee----c-------ccC-ceEEeeC--CcEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFS-NNTVIA----Y-------VKD-LRIALSN--GSLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~-dg~~i~----~-------~~~-~~~~~~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .++|.|.+...-...+.|++. .|+.+.    .       .+. ......+  .+|.|.++..+      |+|+|.|.+.
T Consensus        16 svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~------Dsa~YyCA~~   89 (108)
T d1nfde1          16 TVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPE------DEAAYYCLSS   89 (108)
T ss_dssp             CCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG------GCSEEEEEEE
T ss_pred             CEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCcccc------CCceEEEEee
Confidence            389999986656667999874 343211    0       111 1111222  27888887665      8999999876


Q ss_pred             c
Q psy5697         125 N  125 (145)
Q Consensus       125 N  125 (145)
                      -
T Consensus        90 ~   90 (108)
T d1nfde1          90 Y   90 (108)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0076  Score=38.23  Aligned_cols=66  Identities=12%  Similarity=0.192  Sum_probs=36.2

Q ss_pred             CeEEEeeEecc-CCC--EEEEEccCCeEeecccCceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTRY-EPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G~-P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|.|.|.|. |+-  .+.|. .||..+...........+|+..+.   .+..+++.   ....|.|.+.-....
T Consensus        21 ~v~L~Clv~gF~P~~~i~v~W~-~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~---~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          21 PVIIGCLIHDYFPSGTMNVTWG-KSGKDITTVNFPPALASGGRYTMSNQLTLPAVECP---EGESVKCSVQHDSNP   92 (102)
T ss_dssp             SEEEEEEEEEEBSCCCEEEEES-CCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSC---TTCEEEEEEEETTSC
T ss_pred             cEEEEEEEEcccCCCcEEEEEc-cCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHcc---CCCEEEEEEEECCCC
Confidence            38999999994 653  46774 576654422111233455533222   23333221   134699999765443

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.85  E-value=0.0031  Score=40.74  Aligned_cols=59  Identities=10%  Similarity=0.102  Sum_probs=36.7

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeEee--------------cccCceEEe----eCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTVIA--------------YVKDLRIAL----SNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~~~~~~~~~----~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      ++|.|..+ .....+.|++.. |+.+.              ..+......    ...+|.|.++..+      |+|+|.|
T Consensus        17 vtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DSa~YyC   89 (114)
T d1ogae1          17 VTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN------PTAFYLC   89 (114)
T ss_dssp             EEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC------CCEEEEE
T ss_pred             EEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC------CceeEEE
Confidence            99999986 356789999743 22111              001111111    1237999988766      8999999


Q ss_pred             EEEcC
Q psy5697         122 RASNE  126 (145)
Q Consensus       122 ~A~N~  126 (145)
                      .+...
T Consensus        90 a~~~~   94 (114)
T d1ogae1          90 ASSSR   94 (114)
T ss_dssp             EEESS
T ss_pred             eeccC
Confidence            87654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00045  Score=44.02  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEee-cccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIA-YVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCR  122 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~-~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~  122 (145)
                      +|.+--.|...+  +..++|.|++. .+.-.+..+| ||.... ..+.....-....+.|.++..+      |+|.|+|.
T Consensus         4 kP~Lsa~Ps~~V~~G~~VTL~C~~~-~~~~~f~L~k-eg~~~~~~~~~~~~~~~~a~F~i~~v~~~------~~G~Y~C~   75 (96)
T d1ugna1           4 KPTLWAEPGSVITQGSPVTLRCQGG-QETQEYRLYR-EKKTAPWITRIPQELVKKGQFPIPSITWE------HTGRYRCY   75 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECC-TTCCCEEEEE-SSSCCHHHHTSCHHHHTTTEEEESSCCGG------GCEEEEEE
T ss_pred             CCEEEeECCCccCCCCcEEEEEeCC-CCCCEEEEEE-CCCCcccEEEccCCCCCEEEEEEEecCHH------HCCeEEEE
Confidence            566666666533  33499999953 3455667664 654321 0110000012337888888765      89999999


Q ss_pred             EEcC-CC-ceEEEEEEE
Q psy5697         123 ASNE-AG-VILSRFVHV  137 (145)
Q Consensus       123 A~N~-~G-~~~s~~v~v  137 (145)
                      .... .+ +..|..+.+
T Consensus        76 y~~~~~~~S~~Sd~leL   92 (96)
T d1ugna1          76 YGSDTAGRSESSDPLEL   92 (96)
T ss_dssp             EEETTTEECCCCCCEEE
T ss_pred             EeCCCCCccccCCCEEE
Confidence            7654 22 234544444

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.84  E-value=0.0023  Score=41.57  Aligned_cols=61  Identities=8%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee-c-------ccCceEEeeCC---cEEEcCCCCCCCCCCCCCeEEEEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA-Y-------VKDLRIALSNG---SLMFPPFPETGFRPDVHSTVYRCRAS  124 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-~-------~~~~~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y~C~A~  124 (145)
                      .+.|.|.+...-...+.|++.. |+.   +- .       .+.......++   +|.|.+++.+      |+|+|.|.+.
T Consensus        17 svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------DsavYyCA~~   90 (109)
T d1w72l1          17 TARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAG------DEADYYCQVW   90 (109)
T ss_dssp             CEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG------GCEEEEEEEE
T ss_pred             CEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccC------CCEEEEEEec
Confidence            3999999876666779998642 322   11 0       11111122222   7888887765      8999999886


Q ss_pred             cC
Q psy5697         125 NE  126 (145)
Q Consensus       125 N~  126 (145)
                      ..
T Consensus        91 ~~   92 (109)
T d1w72l1          91 DS   92 (109)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0019  Score=41.04  Aligned_cols=73  Identities=8%  Similarity=-0.137  Sum_probs=38.6

Q ss_pred             CCEEEEcCCCCC--ccCeEEEeeEeccCCCEEEEEccCCeEeecccCceEEe-eCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          46 YPFRIKSAPGGN--RTRGLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIAL-SNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        46 ~P~~i~~p~~~~--~~g~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~-~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +|.+...|...+  +..++|.|+..- ..-.+..+| +|............. ..+   .+.|.++..+      |.|.|
T Consensus         4 kPsLsa~P~~~v~~G~~VTL~C~~~~-~~~~f~L~k-~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~------~~G~Y   75 (98)
T d1ugna2           4 KPTLSAQPSPVVNSGGNVTLQCDSQV-AFDGFILCK-EGEDEHPQCLNSQPHARGSSRAIFSVGPVSPS------RRWWY   75 (98)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECSS-CCSEEEEEE-C------CEEEC------CCEEEEEECCCCTT------SCEEE
T ss_pred             CCEEEeeCCCccCCCCcEEEEeCCCC-CCCEEEEEE-CCCcCCcEeeeeEEcCCCceEEEEEeeecccC------CCeEE
Confidence            466666775533  334999998643 445666654 554321100000111 122   5788777655      89999


Q ss_pred             EEEEEcC
Q psy5697         120 RCRASNE  126 (145)
Q Consensus       120 ~C~A~N~  126 (145)
                      +|.-...
T Consensus        76 ~C~y~~~   82 (98)
T d1ugna2          76 RCYAYDS   82 (98)
T ss_dssp             EEEEECT
T ss_pred             EEeeEcC
Confidence            9987544

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.78  E-value=0.0036  Score=40.25  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=36.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeE---ee-----------cc-cCceEE-eeC---CcEEEcCCCCCCCCCCCCCeEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTV---IA-----------YV-KDLRIA-LSN---GSLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~---i~-----------~~-~~~~~~-~~~---GsL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      .++|.|...+ -...+.|++.. |+.   |-           +. +..... ..+   -+|.|.++..+      |+|.|
T Consensus        16 svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~------Dsa~Y   88 (111)
T d2esve1          16 TVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE------DSGVY   88 (111)
T ss_dssp             CEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG------GCEEE
T ss_pred             CEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC------CCceE
Confidence            3999998655 35689999742 221   10           00 111111 112   26999888765      89999


Q ss_pred             EEEEEcCC
Q psy5697         120 RCRASNEA  127 (145)
Q Consensus       120 ~C~A~N~~  127 (145)
                      .|.+....
T Consensus        89 yCa~~~~~   96 (111)
T d2esve1          89 FCASSQDR   96 (111)
T ss_dssp             EEEEESSS
T ss_pred             EEeeeCCC
Confidence            99876443

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.0041  Score=40.28  Aligned_cols=59  Identities=5%  Similarity=0.047  Sum_probs=35.0

Q ss_pred             eEEEeeEeccC-CC--EEEEEccC-CeEee------c-------ccCc--eEEeeCC--cEEEcCCCCCCCCCCCCCeEE
Q psy5697          61 GLELTRQTRYE-PS--QLGWRFSN-NTVIA------Y-------VKDL--RIALSNG--SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        61 ~~L~C~a~G~P-~P--~i~W~~~d-g~~i~------~-------~~~~--~~~~~~G--sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +.|.|.....- ..  .+.|++.. |+...      .       .++.  .....+.  +|.|.++..+      |+|.|
T Consensus        17 v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------Dsa~Y   90 (117)
T d1dqta_          17 ASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV------DTGLY   90 (117)
T ss_dssp             EEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG------GCEEE
T ss_pred             EEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc------cCEeE
Confidence            99999965433 23  47899743 32211      0       0011  1122233  7999888765      89999


Q ss_pred             EEEEEc
Q psy5697         120 RCRASN  125 (145)
Q Consensus       120 ~C~A~N  125 (145)
                      .|.+..
T Consensus        91 yCa~~~   96 (117)
T d1dqta_          91 LCKVEL   96 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998863

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0084  Score=38.28  Aligned_cols=68  Identities=10%  Similarity=0.126  Sum_probs=36.5

Q ss_pred             CeEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          60 RGLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        60 g~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      .+.|-|.|.| +|. -.|+|. .||+.+...- .......+|+..+.   .+..+++... ....|.|.+....+.
T Consensus        23 ~~~l~Cl~~gF~P~~i~v~W~-~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~-~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          23 SVAVGCLAQDFLPDSITFSWK-YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAG-TDEHVVCKVQHPNGN   96 (105)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEE-ETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC----CCCEEEEEEECTTCC
T ss_pred             ceEEEEEEecccCCcEEEEEE-ECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccC-CCCEEEEEEEECCCC
Confidence            3899999999 553 579997 4665543210 00122355633221   2333333211 124799999887654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.68  E-value=0.0011  Score=42.15  Aligned_cols=59  Identities=8%  Similarity=0.076  Sum_probs=35.7

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ++|.|.|.| +|.. .|+|++ ||..+.... .......+|+....   .+..+      +...|.|.+.-+
T Consensus        19 vtL~C~a~gF~P~~i~v~W~~-~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~------~~~~ytC~V~H~   83 (96)
T d2h26a1          19 LQLVCHVSGFYPKPVWVMWMR-GEQEQQGTQLGDILPNANWTWYLRATLDVADG------EAAGLSCRVKHS   83 (96)
T ss_dssp             EEEEEEEEEEBSSCEEEEEEE-TTEECTTCEECCCEECTTSCEEEEEEEEEEGG------GCTTEEEEEEEG
T ss_pred             EEEEEEEEEEECCCcEEEEEE-CcccCCCceeCccEeCCCCcEEEEEEEEEeCc------cCCEEEEEEEeC
Confidence            899999998 6665 899974 777654221 11233456643322   12222      345799999765

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.65  E-value=0.00069  Score=43.89  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=36.7

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee-----------cccCceEE----eeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA-----------YVKDLRIA----LSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~-----------~~~~~~~~----~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.|.|.... -...+.|++.+ |+.   +-           ........    ....+|.|..+..+      |+|+|.|
T Consensus        16 vtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------Dsa~YyC   88 (112)
T d2cdeb1          16 ITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS------HTSQYLC   88 (112)
T ss_dssp             BCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT------TCSEEEE
T ss_pred             EEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc------ccccEEE
Confidence            899999754 34689999743 221   11           00001111    11236888887665      8999999


Q ss_pred             EEEcCCC
Q psy5697         122 RASNEAG  128 (145)
Q Consensus       122 ~A~N~~G  128 (145)
                      .+....|
T Consensus        89 A~~~~~~   95 (112)
T d2cdeb1          89 ASSENIG   95 (112)
T ss_dssp             EEECSSS
T ss_pred             EEecCCC
Confidence            8875543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0091  Score=38.17  Aligned_cols=42  Identities=14%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             ceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceE-EEEEEEE
Q psy5697          91 LRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVIL-SRFVHVK  138 (145)
Q Consensus        91 ~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~~v~v~  138 (145)
                      ...+..||+|.|..+...      |+|+|...+=|.-|..+ .+.+.+.
T Consensus        56 ~y~i~~nGtLkIK~L~~~------d~GtYkv~vYd~~Gk~vlektf~Lk   98 (101)
T d1hnfa1          56 TYKLFKNGTLKIKHLKTD------DQDIYKVSIYDTKGKNVLEKIFDLK   98 (101)
T ss_dssp             TEEECTTSCEEECSCCGG------GCEEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEEEccCCcEEeeeeeec------CCCcEEEEEEcCCCcEeeeeeEEEE
Confidence            467889999999887654      89999999999999984 4455443

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0033  Score=40.01  Aligned_cols=76  Identities=7%  Similarity=0.048  Sum_probs=40.9

Q ss_pred             EEEEcCCC--CCccCeEEEeeEec-cCC-CEEEEEccCCeEeecccCceEEeeCCcEEE---cCCCCCCCCCCCCCeEEE
Q psy5697          48 FRIKSAPG--GNRTRGLELTRQTR-YEP-SQLGWRFSNNTVIAYVKDLRIALSNGSLMF---PPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        48 ~~i~~p~~--~~~~g~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i---~~~~~~~~~~~~d~G~Y~  120 (145)
                      +++..|..  .....++|.|.|.| +|. -.|+|. .||........ .....+|+...   ..+..+++    +.|.|.
T Consensus         8 V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~-~~~~~~~~~~~-~~~~~~g~~s~~S~L~v~~~~w----~~~~yt   81 (101)
T d1kcvh2           8 VFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWN-EGALSSGVLTV-SAVLQSGLYTLSSNTTVASGTW----PSASVT   81 (101)
T ss_dssp             EEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEG-GGTCCTTEEEC-CCEEETTEEEEEEEEEEETTTT----TTSCCE
T ss_pred             EEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEe-cCCCcccceee-eeecCCCCEEEEEEEEEchhhc----CCCeEE
Confidence            55555543  12223899999999 553 479994 56644221110 11234553221   12333333    356899


Q ss_pred             EEEEcCCCc
Q psy5697         121 CRASNEAGV  129 (145)
Q Consensus       121 C~A~N~~G~  129 (145)
                      |.+......
T Consensus        82 C~V~H~~~~   90 (101)
T d1kcvh2          82 CLVAHPKSS   90 (101)
T ss_dssp             EEEEEGGGT
T ss_pred             EEEEeCCCC
Confidence            999876554

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.60  E-value=0.0046  Score=39.78  Aligned_cols=60  Identities=7%  Similarity=0.052  Sum_probs=37.4

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee--------------cccCce---EEeeCCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA--------------YVKDLR---IALSNGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~~~~~~---~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      .+.|.|...+.-...+.|++.. |+.+.              .....+   ....+.+|.|.....+      |++.|.|
T Consensus        18 ~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~------dsa~Y~C   91 (112)
T d1fo0b_          18 AVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS------QGRTLYC   91 (112)
T ss_dssp             CEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCC------SCEEEEE
T ss_pred             CEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCcc------CCccEEE
Confidence            3999999877667899999753 32211              000011   1233456777766554      8999999


Q ss_pred             EEEc
Q psy5697         122 RASN  125 (145)
Q Consensus       122 ~A~N  125 (145)
                      .+.-
T Consensus        92 a~~~   95 (112)
T d1fo0b_          92 TCSA   95 (112)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            8653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.59  E-value=0.0025  Score=41.09  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             eEEEeeEe-ccCCCEEEEEccC-CeEee----c---c------cCceEE--eeCC--cEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQT-RYEPSQLGWRFSN-NTVIA----Y---V------KDLRIA--LSNG--SLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~-G~P~P~i~W~~~d-g~~i~----~---~------~~~~~~--~~~G--sL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      ++|.|... +.....+.|++.. |+...    .   .      .+....  ..++  +|.|.++..+      |+|+|.|
T Consensus        17 Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyC   90 (115)
T d1fo0a_          17 VTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE------DSAVYFC   90 (115)
T ss_dssp             EEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG------GCEEEEE
T ss_pred             EEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcc------ccccccc
Confidence            99999864 4456789998742 22111    0   0      011111  1222  5999888765      8999999


Q ss_pred             EEEcCCC
Q psy5697         122 RASNEAG  128 (145)
Q Consensus       122 ~A~N~~G  128 (145)
                      .+....+
T Consensus        91 a~~~~~~   97 (115)
T d1fo0a_          91 AMRGDYG   97 (115)
T ss_dssp             EEECCCT
T ss_pred             eeecCCC
Confidence            9875533

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.58  E-value=0.0035  Score=41.39  Aligned_cols=61  Identities=8%  Similarity=0.134  Sum_probs=36.9

Q ss_pred             CeEEEeeEeccC--CCEEEEEcc-CCeE---ee----------c--c-cC-ceEEe-eCC---cEEEcCCCCCCCCCCCC
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFS-NNTV---IA----------Y--V-KD-LRIAL-SNG---SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~-dg~~---i~----------~--~-~~-~~~~~-~~G---sL~i~~~~~~~~~~~~d  115 (145)
                      .+.|.|.++|..  ...+.|++. .|+.   +-          .  . ++ ..... ...   .|.|.++..+      |
T Consensus        18 t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~------D   91 (123)
T d1hxmb1          18 TARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ------D   91 (123)
T ss_dssp             CEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             CEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc------c
Confidence            389999999865  457899874 2321   10          0  0 11 11111 122   5888887665      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +|+|.|.+...
T Consensus        92 sa~YyCA~~~~  102 (123)
T d1hxmb1          92 IATYYCALWEA  102 (123)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CcEEEEeeeCC
Confidence            99999987543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.55  E-value=0.0043  Score=39.93  Aligned_cols=59  Identities=8%  Similarity=0.021  Sum_probs=36.2

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeEee--------------cccCce-EEeeC---CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTVIA--------------YVKDLR-IALSN---GSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~i~--------------~~~~~~-~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.|.|...+ -...+.|++. .|+...              ...... ....+   -+|.|.++..+      |+|+|.|
T Consensus        17 vtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyC   89 (113)
T d2ntsp1          17 VTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG------DSALYLC   89 (113)
T ss_dssp             EEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG------GCEEEEE
T ss_pred             EEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc------cceeeee
Confidence            999999755 3478999973 222211              001111 11122   26999888765      8999999


Q ss_pred             EEEcC
Q psy5697         122 RASNE  126 (145)
Q Consensus       122 ~A~N~  126 (145)
                      .+...
T Consensus        90 A~~~~   94 (113)
T d2ntsp1          90 ASSLA   94 (113)
T ss_dssp             EEESS
T ss_pred             eeeCC
Confidence            88754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0034  Score=40.79  Aligned_cols=60  Identities=13%  Similarity=0.131  Sum_probs=35.0

Q ss_pred             eEEEeeEeccCCC---EEEEEccC-CeE---ee---cc-------cCc-eEEeeCC---cEEEcCCCCCCCCCCCCCeEE
Q psy5697          61 GLELTRQTRYEPS---QLGWRFSN-NTV---IA---YV-------KDL-RIALSNG---SLMFPPFPETGFRPDVHSTVY  119 (145)
Q Consensus        61 ~~L~C~a~G~P~P---~i~W~~~d-g~~---i~---~~-------~~~-~~~~~~G---sL~i~~~~~~~~~~~~d~G~Y  119 (145)
                      +.|.|.....-.+   .+.|++.. |+.   +.   ..       .+. .....++   +|.|.++..+      |+|.|
T Consensus        17 vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~------Dsa~Y   90 (118)
T d1i8lc_          17 ASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM------DTGLY   90 (118)
T ss_dssp             EEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG------GCEEE
T ss_pred             EEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC------CCEEE
Confidence            9999997443333   58998743 221   11   00       000 0111122   7999888765      89999


Q ss_pred             EEEEEcC
Q psy5697         120 RCRASNE  126 (145)
Q Consensus       120 ~C~A~N~  126 (145)
                      .|.+...
T Consensus        91 yCa~~~~   97 (118)
T d1i8lc_          91 ICKVELM   97 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEeEecc
Confidence            9988754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.46  E-value=0.0038  Score=39.55  Aligned_cols=59  Identities=15%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             eEEEeeEeccCC--CEEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.++|.=|  -.|+|+ +||+.+....  .......+|+..+.   .+..+      +...|.|.+.-+
T Consensus        19 ~tL~C~~~gF~P~~i~v~W~-~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~------~~~~ytC~V~H~   84 (97)
T d1uvqb1          19 NLLVCSVTDFYPGQIKVRWF-RNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQ------RGDVYTCHVEHP   84 (97)
T ss_dssp             CEEEEEEEEEBSSCCEEEEE-ETTEEECTTEEECCCEECSSSCEEEEEEEECCSC------TTCCEEEEEECT
T ss_pred             EEEEEEEeeeECCCeEEEEE-ECCEEcCCCcEeceeecCCCceEEEEEEeccCCC------CCCEEEEEEEeC
Confidence            789999999755  479997 5787764211  11133455643332   22211      356799999765

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.39  E-value=0.00091  Score=43.51  Aligned_cols=60  Identities=10%  Similarity=0.171  Sum_probs=35.7

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee-----------cccC-ceEEeeC---CcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA-----------YVKD-LRIALSN---GSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~-----------~~~~-~~~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.|.|..... ...+.|++.. |+.   |-           ..+. ......+   -+|.|.++..+      |+|+|.|
T Consensus        19 v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyC   91 (113)
T d1nfdb1          19 SVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE------DSAMYFC   91 (113)
T ss_dssp             CEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG------GCEEECE
T ss_pred             EEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC------CceeEEE
Confidence            9999997543 4689999753 221   10           0011 1111111   26888877665      8999999


Q ss_pred             EEEcCC
Q psy5697         122 RASNEA  127 (145)
Q Consensus       122 ~A~N~~  127 (145)
                      .+....
T Consensus        92 a~~~~~   97 (113)
T d1nfdb1          92 ASSLRW   97 (113)
T ss_dssp             EEESSS
T ss_pred             EeecCC
Confidence            876543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.39  E-value=0.0067  Score=37.97  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             eEEEeeEecc-CCC-EEEEEccCCeEeecccC---ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRY-EPS-QLGWRFSNNTVIAYVKD---LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~~---~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      +.|.|.|+|. |.. .|+|+ +||+.+.....   ......+|+....   .+..+      +...|+|.++=
T Consensus        18 ~~L~C~~~gFyP~~i~v~W~-~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~------~~~~ytC~V~H   83 (94)
T d1hyrc1          18 ITVTCRASGFYPWNITLSWR-QDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQG------EEQRFTCYMEH   83 (94)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCSTTSEECCCEECSSSCEEEEEEEEEETT------CGGGEEEEEEE
T ss_pred             EEEEEEEEEEECCCcEEEEe-ECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCC------CCCEEEEEEEE
Confidence            8999999995 543 79997 58877653211   1122334543322   12222      34469999953

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0042  Score=39.04  Aligned_cols=24  Identities=17%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             CCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          97 NGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        97 ~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.+|.|.+++.+      |+|.|.|.+...
T Consensus        78 ~~sL~I~~v~~~------DsG~Y~C~v~~~  101 (118)
T d1qfoa_          78 VCNLLLKDLKPE------DSGTYNFRFEIS  101 (118)
T ss_dssp             BCCEEECSCCGG------GCEEEEEEEECC
T ss_pred             EEEEEECCCChh------HCEEEEEEEEeC
Confidence            347999988766      899999999755

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.002  Score=40.18  Aligned_cols=25  Identities=16%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEee
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIA   86 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~   86 (145)
                      +.|.|.|+|.-+.  .|+|. +||+.+.
T Consensus        18 ~~L~C~a~gFyP~~i~v~W~-~~g~~~~   44 (89)
T d2mhaa1          18 VTLRCWALGFYPADITLTWQ-LNGEELI   44 (89)
T ss_dssp             EEEEEEEESCBSSCCEEEEE-ETTEEEC
T ss_pred             EEEEEEEEeEECCCCEEEEE-ECCEEeC
Confidence            8999999996554  57997 5887765

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.33  E-value=0.0078  Score=39.44  Aligned_cols=58  Identities=12%  Similarity=0.091  Sum_probs=35.3

Q ss_pred             eEEEeeEeccC--CCEEEEEccC-CeE---ee------------cccCceEE-e-eCC---cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYE--PSQLGWRFSN-NTV---IA------------YVKDLRIA-L-SNG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P--~P~i~W~~~d-g~~---i~------------~~~~~~~~-~-~~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.+.|.-  ...+.|++.. |+.   |-            ........ . .+.   .|.|.++..+      |+|
T Consensus        19 vtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~------Dsa   92 (120)
T d1ypzf1          19 AQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE------DEA   92 (120)
T ss_dssp             EEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG------GCS
T ss_pred             EEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc------cce
Confidence            99999987754  4679998742 321   11            00111111 1 222   4889888765      899


Q ss_pred             EEEEEEE
Q psy5697         118 VYRCRAS  124 (145)
Q Consensus       118 ~Y~C~A~  124 (145)
                      +|.|.+.
T Consensus        93 ~YyCA~~   99 (120)
T d1ypzf1          93 IYYCSYG   99 (120)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEc
Confidence            9999764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.33  E-value=0.0074  Score=38.75  Aligned_cols=59  Identities=15%  Similarity=0.073  Sum_probs=36.2

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeEee--------------cccCceEEe-e---CCcEEEcCCCCCCCCCCCCCeEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTVIA--------------YVKDLRIAL-S---NGSLMFPPFPETGFRPDVHSTVYRC  121 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~i~--------------~~~~~~~~~-~---~GsL~i~~~~~~~~~~~~d~G~Y~C  121 (145)
                      +.|.|..+.. ...+.|++. .|+...              ..+...... .   +.+|.|.++..+      |+|+|.|
T Consensus        17 vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------DsavYyC   89 (112)
T d2bnub1          17 MTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS------QTSVYFC   89 (112)
T ss_dssp             EEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG------GCEEEEE
T ss_pred             EEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH------HCEEEEE
Confidence            9999987543 578999973 232211              011111111 1   237999888765      8999999


Q ss_pred             EEEcC
Q psy5697         122 RASNE  126 (145)
Q Consensus       122 ~A~N~  126 (145)
                      .+...
T Consensus        90 A~~~~   94 (112)
T d2bnub1          90 ASSYV   94 (112)
T ss_dssp             EEECS
T ss_pred             eecCC
Confidence            87643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0049  Score=39.72  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=19.2

Q ss_pred             CcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          98 GSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        98 GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.+++.+      |+|.|.|.....
T Consensus        83 ~sL~I~~v~~~------DsG~Y~C~v~~~  105 (121)
T d2g5ra1          83 CTLSIRDARMS------DAGRYFFRMEKG  105 (121)
T ss_dssp             CCEEECSCCGG------GCEEEEEEEEET
T ss_pred             EEEEECCCChH------HCEEEEEEEEeC
Confidence            37999998776      899999999643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.32  E-value=0.01  Score=38.80  Aligned_cols=61  Identities=13%  Similarity=0.096  Sum_probs=37.1

Q ss_pred             CeEEEeeEeccC--CCEEEEEcc-CCeE---ee--------cccCc-e-EE-eeC--CcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYE--PSQLGWRFS-NNTV---IA--------YVKDL-R-IA-LSN--GSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P--~P~i~W~~~-dg~~---i~--------~~~~~-~-~~-~~~--GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .++|.|..+|..  ...+.|++. .|+.   +-        ..++. . .. ...  -+|.|.++..+      |+|+|.
T Consensus        18 ~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~------Dsa~Yy   91 (120)
T d1hxma1          18 PATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER------DEGSYY   91 (120)
T ss_dssp             CEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc------CCceee
Confidence            399999998765  467999863 2221   11        01111 1 11 112  27888877665      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.....
T Consensus        92 CA~~~~   97 (120)
T d1hxma1          92 CACDTL   97 (120)
T ss_dssp             EEEECC
T ss_pred             cCcccC
Confidence            987553

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.31  E-value=0.006  Score=39.23  Aligned_cols=60  Identities=12%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             CeEEEeeEeccCCCEEEEEccC-CeEee--------------cccCceE-EeeC---CcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          60 RGLELTRQTRYEPSQLGWRFSN-NTVIA--------------YVKDLRI-ALSN---GSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        60 g~~L~C~a~G~P~P~i~W~~~d-g~~i~--------------~~~~~~~-~~~~---GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      .+.|.|.... -...+.|++.. |+.+.              ..+..+. ...+   .+|.|.++..+      |+|+|.
T Consensus        17 ~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~------Dsa~Yy   89 (113)
T d1j8he1          17 KVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTN------QTSMYL   89 (113)
T ss_dssp             CEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGG------GCEEEE
T ss_pred             CEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccC------CcccEE
Confidence            3999998632 35789998742 32211              0011111 1112   26888877655      899999


Q ss_pred             EEEEcC
Q psy5697         121 CRASNE  126 (145)
Q Consensus       121 C~A~N~  126 (145)
                      |.+...
T Consensus        90 Ca~~~~   95 (113)
T d1j8he1          90 CASSST   95 (113)
T ss_dssp             EEEECT
T ss_pred             eeEccC
Confidence            998743

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.0033  Score=40.04  Aligned_cols=61  Identities=11%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             eEEEeeEecc-CCC---EEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCe-EEEEEEEcC
Q psy5697          61 GLELTRQTRY-EPS---QLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHST-VYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~-P~P---~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G-~Y~C~A~N~  126 (145)
                      +.|.|.+.|. |.+   +|+|. .||..+.... .......+|+..+.   .+..+++    +.| .|+|.+...
T Consensus        19 ~~l~Clv~~f~p~~~~v~v~W~-~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W----~~g~~~tC~V~H~   88 (103)
T d1i1ca1          19 PKVTCVVVDISQNDPEVRFSWF-IDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW----LNGKTFKCKVNSG   88 (103)
T ss_dssp             CEEEEEEEEECTTCCCCEEEEE-ESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH----HTTCCEEEEEECS
T ss_pred             cEEEEEEEeeECCCCCEEEEEE-ECCccccCCEECCcEECCCCCEEEEEEEEECHHHh----cCCCEEEEEEEeC
Confidence            7899999984 543   88897 4666554211 11133445543222   2322221    244 499999875

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.15  E-value=0.013  Score=37.39  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=34.5

Q ss_pred             eEEEeeEeccCCCEEEEEccC-CeE---ee---------c--c-cCce-EEeeC---CcEEEcCCCCCCCCCCCCCeEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSN-NTV---IA---------Y--V-KDLR-IALSN---GSLMFPPFPETGFRPDVHSTVYR  120 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~d-g~~---i~---------~--~-~~~~-~~~~~---GsL~i~~~~~~~~~~~~d~G~Y~  120 (145)
                      +.|.|...+ ....+.|++.. |+.   +-         .  . .+.. ....+   -+|.|.++..+      |+|+|.
T Consensus        17 vtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~------Dsa~Yy   89 (112)
T d1kgce1          17 VALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE------DSAVYL   89 (112)
T ss_dssp             EEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG------GCEEEE
T ss_pred             EEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC------CCEEEE
Confidence            999998654 45789998742 221   10         0  0 0111 11112   26999888765      899999


Q ss_pred             EEEE
Q psy5697         121 CRAS  124 (145)
Q Consensus       121 C~A~  124 (145)
                      |.+.
T Consensus        90 Ca~~   93 (112)
T d1kgce1          90 CASS   93 (112)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            9875

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0044  Score=39.64  Aligned_cols=65  Identities=11%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             CeEEEeeEec-cCC-CEEEEEccCCeEeecccC---ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          60 RGLELTRQTR-YEP-SQLGWRFSNNTVIAYVKD---LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        60 g~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~---~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      .++|.|.+.| +|. -.|+|+ .||+.+.....   ......+|+..+.   .+..+++.   ....|.|.+.-+..
T Consensus        21 ~vtL~Clv~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~---~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          21 KRTLACLIQNFMPEDISVQWL-HNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWE---QKDEFICRAVHEAA   93 (105)
T ss_dssp             CEEEEEEEEEEBSSCCEEEEE-ETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHT---TGGGEEEEEECTTS
T ss_pred             cEEEEEEEEeeeCCCcEEEEE-ECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcC---CCCEEEEEEEECCC
Confidence            3899999999 553 589997 58887653210   1123345543322   12222211   23569999987644

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0064  Score=38.72  Aligned_cols=64  Identities=9%  Similarity=0.126  Sum_probs=37.1

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeecccC-ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVKD-LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.|.| +|.. .|+|+ .||+.+..... ......+|+..+.   .+..+++.   ....|.|.++....
T Consensus        24 v~L~Cl~~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~---~~~~ytC~V~H~~~   93 (104)
T d1o0va1          24 IQLLCLVSGYTPGTIQITWL-EDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWL---SDRTYTCQVTYQGH   93 (104)
T ss_dssp             EEEEEEEEEECCCCEEEEEE-ETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHH---TTCCEEEEEEETTE
T ss_pred             EEEEEEEEEEECCCcEEEEE-ECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcC---CCCEEEEEEEECCE
Confidence            789999999 6655 69997 58888653211 1123445532221   12222111   13459999998754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.06  E-value=0.036  Score=36.46  Aligned_cols=60  Identities=8%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             eEEEeeEeccCC----CEEEEEcc-CCeEee------c---------ccCceEEe-e-CC---cEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP----SQLGWRFS-NNTVIA------Y---------VKDLRIAL-S-NG---SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~----P~i~W~~~-dg~~i~------~---------~~~~~~~~-~-~G---sL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.++|...    ..+.|++. .|+.+.      .         .++...+. + ..   .|.|.+++.+      |
T Consensus        18 v~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e------D   91 (120)
T d2agjh1          18 LTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV------D   91 (120)
T ss_dssp             EEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG------G
T ss_pred             EEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec------c
Confidence            899999998643    46889864 232211      0         11111221 1 11   5888888766      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +++|.|.....
T Consensus        92 sAvYyCAr~~~  102 (120)
T d2agjh1          92 TATYYCARTSG  102 (120)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEeeEecCC
Confidence            99999975543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0015  Score=41.24  Aligned_cols=59  Identities=14%  Similarity=0.229  Sum_probs=34.5

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccCc--eEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDL--RIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~--~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|+|.-+.  .|+|. +||+.+......  .....+|+....   .+...      +...|+|.++=+
T Consensus        18 ~~L~C~~~gFyP~~i~vtW~-~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~------~~~~ytC~V~H~   83 (95)
T d1k5na1          18 ATLRCWALGFYPAEITLTWQ-RDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSG------EEQRYTCHVQHE   83 (95)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECGGGCEECCCEECSSSCEEEEEEEEEETT------CGGGEEEEEECT
T ss_pred             EEEEEEEEeEeCCCCEEEEE-ECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcC------CCCEEEEEEEEC
Confidence            8999999998776  56997 588776532111  122334422211   12222      345799999743

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.011  Score=38.20  Aligned_cols=23  Identities=9%  Similarity=0.281  Sum_probs=18.5

Q ss_pred             cEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          99 SLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        99 sL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +|.|.++..+      |+|+|.|.+....
T Consensus        78 ~L~I~~l~~~------DsavYyCa~~~~~  100 (118)
T d1yjdc1          78 TFYLQNLYVN------QTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEESCCGG------GCEEEEEEEEEEE
T ss_pred             EEEECCCCcc------cCeEEEEEEeccc
Confidence            6999888765      8999999876543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.97  E-value=0.022  Score=37.59  Aligned_cols=60  Identities=10%  Similarity=0.066  Sum_probs=36.0

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee---------------cccCceEEeeCC-----cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA---------------YVKDLRIALSNG-----SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~---------------~~~~~~~~~~~G-----sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|....  .+.|++. .|+-++               ..++...+..+.     .|.|..++.+      |++
T Consensus        17 l~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e------DtA   90 (119)
T d1kxvc_          17 LRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD------DTA   90 (119)
T ss_dssp             EEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG------GCE
T ss_pred             eEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC------Ccc
Confidence            8999999998754  4678764 232111               111111222221     4888777665      899


Q ss_pred             EEEEEEEcC
Q psy5697         118 VYRCRASNE  126 (145)
Q Consensus       118 ~Y~C~A~N~  126 (145)
                      +|.|.+.-.
T Consensus        91 ~YYCAr~~~   99 (119)
T d1kxvc_          91 MYYCKPSLR   99 (119)
T ss_dssp             EEEEEEEES
T ss_pred             eEeeeeccc
Confidence            999976543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.95  E-value=0.00089  Score=42.49  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             eEEEeeEeccCCCEEEEEcc-CCeEee------------cccCceEEe--eC--CcEEEcCCCCCCCCCCCCCeEEEEEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFS-NNTVIA------------YVKDLRIAL--SN--GSLMFPPFPETGFRPDVHSTVYRCRA  123 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~-dg~~i~------------~~~~~~~~~--~~--GsL~i~~~~~~~~~~~~d~G~Y~C~A  123 (145)
                      ++|.|...+ ....+.|++. .|+...            ..++.+...  ..  -+|.|.+++.+      |+|+|.|.+
T Consensus        11 vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~------Dsa~YyCA~   83 (96)
T d1ymmd1          11 ATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAA------DTASYFCAT   83 (96)
T ss_dssp             CCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCST------TCSCCEEEE
T ss_pred             EEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcc------cCEEEeEeE
Confidence            899998765 4578999874 232211            001111111  11  26888887765      899999998


Q ss_pred             EcCCCc
Q psy5697         124 SNEAGV  129 (145)
Q Consensus       124 ~N~~G~  129 (145)
                      ....|.
T Consensus        84 ~~~~g~   89 (96)
T d1ymmd1          84 DTTSGT   89 (96)
T ss_dssp             EETTSC
T ss_pred             ecCCCC
Confidence            876664

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.003  Score=40.19  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             eEEEeeEecc-CC---CEEEEEccCCeEeecccCceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRY-EP---SQLGWRFSNNTVIAYVKDLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~-P~---P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      ++|.|.++|. |.   -++.|.+.++..............+|+..+.   .+..+++.   ....|.|.+....
T Consensus        19 ~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~---~g~~~tC~V~H~~   89 (103)
T d1fp5a1          19 PTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI---EGETYQCRVTHPH   89 (103)
T ss_dssp             CEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHH---TTCCEEEEEECSS
T ss_pred             eEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhC---CCCeEEEEEEECC
Confidence            8999999995 53   2667765444332211111123345543322   22222211   1457999999864

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0053  Score=39.38  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=35.7

Q ss_pred             eEEEeeEecc--CCCEEEEEcc-CCeE---eec-----------ccCceEE---eeCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          61 GLELTRQTRY--EPSQLGWRFS-NNTV---IAY-----------VKDLRIA---LSNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        61 ~~L~C~a~G~--P~P~i~W~~~-dg~~---i~~-----------~~~~~~~---~~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      ++|.|...+.  ....+.|++. .|..   +..           ..+....   ...+  +|.|.++..+      |+|.
T Consensus        17 vtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~------Dsg~   90 (113)
T d1smoa_          17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE------DSGL   90 (113)
T ss_dssp             EEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG------GCEE
T ss_pred             EEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc------cCce
Confidence            9999987643  4567899864 2211   110           0011111   1233  5888888766      8999


Q ss_pred             EEEEEEcC
Q psy5697         119 YRCRASNE  126 (145)
Q Consensus       119 Y~C~A~N~  126 (145)
                      |.|...-.
T Consensus        91 Y~Cav~~~   98 (113)
T d1smoa_          91 YQCVIYQP   98 (113)
T ss_dssp             EEEEECCT
T ss_pred             EEEEEECC
Confidence            99987443

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.023  Score=35.91  Aligned_cols=65  Identities=14%  Similarity=0.164  Sum_probs=36.1

Q ss_pred             CeEEEeeEeccCC--CEEEEEccCCeEeecccCceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          60 RGLELTRQTRYEP--SQLGWRFSNNTVIAYVKDLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        60 g~~L~C~a~G~P~--P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      .+.|.|.|.|.=+  -.|+|. .+|....... ......+|+....   .+..+++    +.+.|.|.++...+..
T Consensus        22 ~~~l~Cl~~gf~P~~i~v~W~-~~~~~~~~~~-~~~~~~~g~ys~~S~L~v~~~~w----~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          22 SVTLGCLVKGYFPEPVTLTWN-SGSLSSGVHT-FPAVLQSDLYTLSSSVTVTSSTW----PSQSITCNVAHPASST   91 (102)
T ss_dssp             CEEEEEEEEEEBSSCCEEEEG-GGTBCTTEEE-CCCEEETTEEEEEEEEEECTTTT----TTSCCEEEEEEGGGTE
T ss_pred             cEEEEEEEeeeeCCCeEEEEC-cCCccCCeEe-cccccCCCCEEEEEEEEEehhHc----CCceEEEEEEECCCCE
Confidence            3899999999543  379994 5553311101 1122345633221   2333433    2467999999876543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0046  Score=39.23  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|.|.=+.  +|+|+ .||.++.... .......+|+..+.   .+..+++.   ....|.|.+.-.
T Consensus        22 ~~L~C~v~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~---~~~~ytC~V~H~   89 (102)
T d1i1ca2          22 VSITCMVKGFYPPDIYTEWK-MNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQ---QGNTFTCSVLHE   89 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHH---TTCCEEEEEECT
T ss_pred             EEEEEEEEEEECCCCEEEEE-ECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhC---CCCEEEEEEEeC
Confidence            8899999887654  79997 5787654211 01133456643332   22222110   234699999875

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.011  Score=37.07  Aligned_cols=71  Identities=21%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecc-cCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYV-KDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVKA  139 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~-~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~~  139 (145)
                      +.|.|.-  .....|.|.+ ++..+... +....-.....|.+..+..     -.++|.|+|.+...--...+..+.+++
T Consensus        13 V~LTCP~--~~~~~i~W~~-n~~~~~~~~~~~~~~~~~~~l~L~dfSe-----~e~sGyY~C~~~~~~~~~~~~~LYLKA   84 (91)
T d1xiwa_          13 VILTCPQ--YPGSEILWQH-NDKNIGGDEDDKNIGSDEDHLSLKEFSE-----LEQSGYYVCYPRGSKPEDANFYLYLRA   84 (91)
T ss_dssp             EEEECSS--CTTSCEEEEE-TTEEESSSCSCTTEEEETTEEEETTCCH-----HHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred             EEEECCC--CCCCceeeee-ccccccCCCcccccccccceEEecccCc-----cccCceEEEEcCCCCCCCcceEEEEEe
Confidence            8999973  3557899974 55555422 1112233344566655432     126999999996543333344455543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0046  Score=39.15  Aligned_cols=63  Identities=19%  Similarity=0.284  Sum_probs=35.9

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.|.| +|. -+|+|+ .||+...... .......+|+..+.   .+..+++.   ..-.|.|.++.+.
T Consensus        22 ~tL~Clv~gf~P~~i~v~W~-~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~---~g~~ytC~V~H~~   90 (102)
T d1l6xa2          22 VSLTCLVKGFYPSDIAVEWE-SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ---QGNVFSCSVMHEA   90 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHH---TTCCEEEEEECTT
T ss_pred             eEEEEEEEEeECCCCEEEEE-ECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcC---CCCEEEEEEEeCC
Confidence            889999999 454 389997 5887654211 11133456643322   12222111   1346999998764

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.65  E-value=0.11  Score=32.74  Aligned_cols=59  Identities=14%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeecccCc-eEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVKDL-RIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+|.|.+.| +|. -.|+|+ +||..+...... .....+|+..+..   +..+      +...|.|.+.=+
T Consensus        21 ~tL~C~v~gF~P~~i~V~W~-~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~------~~~~ytC~V~H~   85 (103)
T d1hdma1          21 NTLVCFVSNLFPPMLTVNWH-DHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPE------PSDIFSCIVTHE   85 (103)
T ss_dssp             EEEEEEEEEEBSSCEEEEEE-ETTEECSSCCCEEEEEETTTEEEEEEEEEECCC------TTCCEEEEEEET
T ss_pred             eEEEEEEeeEECCCCEEEEE-ECCeecCCcEeceEEeCCCCcEEEEEEEEEecC------CCCEEEEEEEeC
Confidence            789999999 553 479996 588776532211 1234566444322   2222      345699999765

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.007  Score=38.34  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|.| +|. -.|+|+ +||..+.... .......+|+..+..   +..+++.   ....|.|.+.-+
T Consensus        21 ~tL~C~v~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~---~~~~ytC~V~H~   88 (101)
T d1cqka_          21 VSLTCMITDFFPEDITVEWQ-WNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWE---AGNTFTCSVLHE   88 (101)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHH---TTCCEEEEEECT
T ss_pred             EEEEEEEEEeECCCcEEEEE-ECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhC---CCCEEEEEEEEC
Confidence            899999999 463 579997 5887754211 011334555433321   2222111   245699999765

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.48  E-value=0.03  Score=36.90  Aligned_cols=59  Identities=15%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             eEEEeeEeccCCC---EEEEEcc-CCeEee------c---------ccCc-eEEee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS---QLGWRFS-NNTVIA------Y---------VKDL-RIALS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P---~i~W~~~-dg~~i~------~---------~~~~-~~~~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-   .+.|.|. .|+-++      .         .++. ....+  ..  .|.+.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e------DT   91 (119)
T d1ncwh1          18 LSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE------DT   91 (119)
T ss_dssp             EEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC------Cc
Confidence            8999999999874   3688763 333221      1         1111 11111  11  4777777655      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|...-
T Consensus        92 AvYYCAr~~  100 (119)
T d1ncwh1          92 ATYYCAGLL  100 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEeEec
Confidence            999996543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.47  E-value=0.0024  Score=40.80  Aligned_cols=65  Identities=12%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeecccCc-eEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVKDL-RIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV  129 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~~~-~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~  129 (145)
                      +.|.|.|+| +|.. +|+|+ .||..+...... .....+|+....   .+...++.   +...|.|.++.....
T Consensus        23 ~~l~C~~~gf~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~---~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          23 ATLVCLVNDFYPGSATVTWK-ANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWK---SHNRVSCQVTHEGET   93 (104)
T ss_dssp             ECCCEEEEEEBSSCCEEEEE-ETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHH---TCSCEEEEEECTTTT
T ss_pred             EEEEEEEEEeeCCCCEEEEE-ECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcC---CCCEEEEEEEECCCc
Confidence            789999999 5543 89997 588877532111 122345543322   22222111   234699999987654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.45  E-value=0.046  Score=35.92  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=37.3

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCceEEee-C--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDLRIALS-N--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~~~~~~-~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|+++ .|+.++      .          .++...+.. +  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e------Dt   91 (118)
T d2fbjh1          18 LKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE------DT   91 (118)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG------GC
T ss_pred             EEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC------cc
Confidence            8999999998765  4788763 332211      0          111112211 1  1  3677666554      89


Q ss_pred             eEEEEEEEcCCCc
Q psy5697         117 TVYRCRASNEAGV  129 (145)
Q Consensus       117 G~Y~C~A~N~~G~  129 (145)
                      ++|.|......|.
T Consensus        92 AvYYCAr~~~~~~  104 (118)
T d2fbjh1          92 ALYYCARLHYYGY  104 (118)
T ss_dssp             EEEEEEEEETTTE
T ss_pred             eEEEeeEecCCCC
Confidence            9999987665443

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.023  Score=34.96  Aligned_cols=54  Identities=13%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             ccC-eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          58 RTR-GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        58 ~~g-~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      ..| +.|.|.   ....+|+|+ +||..+....     ..+.+|-+......      ..|.|+|.+++.
T Consensus        16 ~dg~V~L~Cn---~~~k~i~W~-kdg~~i~~~~-----~~~ktlnLG~~~~D------PRG~Y~C~~~~~   70 (81)
T d1sy6a1          16 EDGSVLLTCD---AEAKNITWF-KDGKMIGFLT-----EDKKKWNLGSNAKD------PRGMYQCKGSQN   70 (81)
T ss_dssp             SSSEEEEEEC---SCSSEEEEE-ETTEEEEEEE-----SSCCCEEEEEGGGC------CEEEEEEESSSS
T ss_pred             cCCeEEEEeC---CCCcEEEEe-cCCeEeeccc-----CCcceeecCCcccC------CCcceEcCCCCc
Confidence            344 999994   355699997 5887654211     12334444432221      489999977543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.028  Score=35.32  Aligned_cols=63  Identities=11%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             eEEEeeEec-cCCC-EEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTR-YEPS-QLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G-~P~P-~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.|.| +|.. .|+|+ .||+.+....  .......+|+..+.   .+..+++.   ....|.|.++...
T Consensus        23 ~tL~C~v~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~---~~~~ytC~V~H~~   92 (102)
T d1rzfl2          23 ATLVCLISDFYPGAVTVAWK-ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWK---SHRSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHH---HSSCEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCeEEEEE-ECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhC---CCCEEEEEEEECC
Confidence            899999999 4533 79997 5888765321  11123345643332   12222110   1335999998864

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.35  E-value=0.053  Score=34.72  Aligned_cols=63  Identities=13%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------e-c---------ccCceEEeeC---C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------A-Y---------VKDLRIALSN---G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~-~---------~~~~~~~~~~---G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|+++ .|+.+      . .         .++...+..+   .  .|.|.+++.+      |+
T Consensus         5 l~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~e------DT   78 (103)
T d1oari_           5 VKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSE------DS   78 (103)
T ss_dssp             EEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---------CC
T ss_pred             eEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeecccc------cc
Confidence            8999999997755  5889863 23221      1 0         1111112111   1  4777777655      89


Q ss_pred             eEEEEEEEcCCCc
Q psy5697         117 TVYRCRASNEAGV  129 (145)
Q Consensus       117 G~Y~C~A~N~~G~  129 (145)
                      ++|.|......|.
T Consensus        79 AvYYCAr~~~~~~   91 (103)
T d1oari_          79 AVYYCARMWYYGT   91 (103)
T ss_dssp             SEEEEEEEECSSS
T ss_pred             EEEEeEEECCCCC
Confidence            9999987665544

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.34  E-value=0.035  Score=36.55  Aligned_cols=20  Identities=10%  Similarity=0.162  Sum_probs=16.2

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|....  .+.|++.
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ   39 (119)
T d1eapb1          18 VKISCKASGYISTDHAIHWVKQ   39 (119)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEccCcccCCCCcccee
Confidence            8999999998754  4788863

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.31  E-value=0.047  Score=35.94  Aligned_cols=57  Identities=14%  Similarity=0.097  Sum_probs=34.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c---------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y---------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~---------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|...-  .+.|+++ .|+.++      .         .++...+ .+  ..  .|.|.+++.+      |++
T Consensus        18 l~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e------DtA   91 (120)
T d1dn0b1          18 LSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA------DTA   91 (120)
T ss_dssp             EEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------GCE
T ss_pred             EEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc------ccc
Confidence            8999999998765  4779864 232211      0         1111122 21  11  3788777655      899


Q ss_pred             EEEEEE
Q psy5697         118 VYRCRA  123 (145)
Q Consensus       118 ~Y~C~A  123 (145)
                      +|.|..
T Consensus        92 ~YYCAr   97 (120)
T d1dn0b1          92 VYYCAR   97 (120)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999943

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.088  Score=33.03  Aligned_cols=64  Identities=11%  Similarity=0.041  Sum_probs=38.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEee-CCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCce-EEE
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALS-NGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVI-LSR  133 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~-~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~-~s~  133 (145)
                      +++.|.++ +|.-+++=.+.++..+... +.....+ .--+.|.+....      +.|.|.|.|+-. |.. .|.
T Consensus        23 ~vIPC~vT-~P~~~VtL~~~~~~~~~p~-g~~v~~Dpk~Gf~I~~~~~~------~~g~y~C~a~~~-g~~~~S~   88 (95)
T d1fltx_          23 LVIPCRVT-SPNITVTLKKFPLDTLIPD-GKRIIWDSRKGFIISNATYK------EIGLLTCEATVN-GHLYKTN   88 (95)
T ss_dssp             EEECCCBS-CTTSCCEEEETTTEEECCC-SSSEEEETTTEEEESSCCGG------GCEEEEEEEEET-TEEEEEE
T ss_pred             EEEEccCC-CCCceeEEEeccCCccCCC-CCEEEECCCCCEEEeCCCcc------cCeEEEEEEEEC-CEEEEEE
Confidence            89999998 4876654334454443321 1223322 335777665443      799999999766 544 554

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.13  E-value=0.072  Score=34.88  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------ec----------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------AY----------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~~----------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|+++ .|+.+      ..          .++...+ .+  ..  .|.|.+++.+      |+
T Consensus        17 l~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e------Dt   90 (117)
T d1um5h1          17 VKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE------DS   90 (117)
T ss_dssp             EEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC------cc
Confidence            8999999998765  5788763 33221      11          1111111 22  12  3777777665      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|....
T Consensus        91 AvYYCAr~~   99 (117)
T d1um5h1          91 AVYYCARSS   99 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEeecc
Confidence            999996543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.11  E-value=0.057  Score=35.40  Aligned_cols=61  Identities=8%  Similarity=0.157  Sum_probs=36.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------e----------cccCceEEe-e--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------A----------YVKDLRIAL-S--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~----------~~~~~~~~~-~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|++. .|+.+      .          ..++...+. +  ..  .|.|..++.+      |+
T Consensus        18 v~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e------Dt   91 (117)
T d1iqdb1          18 VKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD------DT   91 (117)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC------cc
Confidence            9999999997644  4688763 23221      1          111111221 1  12  3777777655      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      ++|.|......
T Consensus        92 AvYYCA~~~~~  102 (117)
T d1iqdb1          92 AVYYCAVPDPD  102 (117)
T ss_dssp             EEEEEEECSSS
T ss_pred             eEEEEeEcCCC
Confidence            99999876543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.019  Score=36.54  Aligned_cols=63  Identities=6%  Similarity=0.187  Sum_probs=35.4

Q ss_pred             eEEEeeEecc-CC-CEEEEEccCCeEeecccC---ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVKD---LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~---~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.|.|. |. -.|+|+ .||+.+...-.   ......+|+..+.   .+.++++.   ....|.|.++-+.
T Consensus        23 ~tL~Cl~~~f~P~~i~v~W~-~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~---~g~~ytC~V~H~~   93 (107)
T d1mjul2          23 ASVVCFLNNFYPKDINVKWK-IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE---RHNSYTCEATHKT   93 (107)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH---TCCEEEEEEECTT
T ss_pred             eEEEEEEEEeECCCCEEEEE-ECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhC---CCCEEEEEEEECC
Confidence            8999999885 43 379996 58887653110   0011235543322   22222211   1447999998653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.01  E-value=0.065  Score=35.15  Aligned_cols=20  Identities=10%  Similarity=0.145  Sum_probs=15.9

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|....  .+.|++.
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ   39 (118)
T d1nlbh1          18 VKISCKASGYTFTDFSMHWVNQ   39 (118)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEcCCCCCCCceecccc
Confidence            8999999997644  5888763

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=94.99  E-value=0.019  Score=36.28  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecc--c----CceEEeeCCcEEEcC---CCCCCCCCCCCCeEEEEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYV--K----DLRIALSNGSLMFPP---FPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~--~----~~~~~~~~GsL~i~~---~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ++|.|.|.|.=|.  .|+|+ +||+.+...  .    .......+|+..+..   +...      +...|.|.+.=
T Consensus        17 vtL~C~~~gFyP~~I~v~W~-~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~------~~~~ytC~V~H   85 (98)
T d1u58a1          17 MRLRCFARDYYPADLEIRWW-KDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGG------LEHVYSCRVKG   85 (98)
T ss_dssp             EEEEEEEEEEBSSCEEEEEE-EECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTT------CGGGEEEEEEE
T ss_pred             EEEEEEEEEEcCCCCEEEEE-ECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCC------CCCEEEEEEEe
Confidence            8999999998765  68996 566543211  1    111334556543332   2222      35679999963

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.95  E-value=0.065  Score=35.36  Aligned_cols=59  Identities=10%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------ec----------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------AY----------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~~----------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|++. .|+.+      ..          .++...+ .++  .  .|.|.+++.+      |+
T Consensus        19 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e------Dt   92 (122)
T d1vgeh1          19 VKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE------DT   92 (122)
T ss_dssp             EEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC------cc
Confidence            9999999998754  5888863 23221      11          1111111 221  2  3677666554      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|...-
T Consensus        93 A~YYCAr~~  101 (122)
T d1vgeh1          93 AVYYCARDP  101 (122)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEeecC
Confidence            999997653

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.93  E-value=0.22  Score=33.26  Aligned_cols=79  Identities=14%  Similarity=0.134  Sum_probs=45.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCceEEee---CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDLRIALS---NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~~~~~~---~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|+++ .|+-++      .          .++...+..   ..  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e------DT   91 (135)
T d1ieha_          18 LRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE------DT   91 (135)
T ss_dssp             EEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS------SC
T ss_pred             eEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc------cc
Confidence            8999999997643  4788763 232111      0          111111211   11  3777776655      89


Q ss_pred             eEEEEEEEcCCCce---EEEEEEEEeccCCCC
Q psy5697         117 TVYRCRASNEAGVI---LSRFVHVKADSRIPM  145 (145)
Q Consensus       117 G~Y~C~A~N~~G~~---~s~~v~v~~~~~~p~  145 (145)
                      ++|.|......+-.   .-..|+|.+.-.+|+
T Consensus        92 AvYYCAr~~~~~~d~WGqGT~VTVsSas~~p~  123 (135)
T d1ieha_          92 AVYYCAKYSGGALDAWGQGTQVTVSSQSEQKL  123 (135)
T ss_dssp             EEEEEEEBSSSSBCCCSCCEEEEECSSCCCCC
T ss_pred             eeeEEEEecCCccceeCCCEEEEEECCCCCCC
Confidence            99999765443321   345777776666653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.87  E-value=0.08  Score=34.98  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------eec----------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IAY----------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~~----------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|.++ .|+.      |..          .++...+ .+  ..  .|.+..++.+      |+
T Consensus        17 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e------Dt   90 (124)
T d1zvya1          17 LRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE------DT   90 (124)
T ss_dssp             EEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             eEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC------cc
Confidence            8999999998765  5788764 2321      111          1111111 11  12  3666666544      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.+...
T Consensus        91 AvYYCAr~~~  100 (124)
T d1zvya1          91 AIYTCGATRK  100 (124)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEeeccc
Confidence            9999987654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.023  Score=36.10  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCC-cEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNG-SLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~G-sL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|...+.  -.|.|. +++..+...        ++ .|.+..+..     ..++|.|.|..++.
T Consensus        17 V~LTCP~~~~--~~I~Wk-kn~~~i~g~--------~~~~L~L~~FSE-----~e~SGyY~C~~~~~   67 (100)
T d1jbja2          17 VELTCPLDSD--ENLKWE-KNGQELPQK--------HDKHLVLQDFSE-----VEDSGYYVCYTPAS   67 (100)
T ss_dssp             EEEECSSCCC--TTCEEE-ETTEEECSC--------CCSEEEEESCCT-----TTSCEEEEEECSSC
T ss_pred             EEEECCCCCC--CceEEe-eccccCCCC--------CCcEEEEccccc-----cccCcceEEecCCC
Confidence            8999997654  469995 577776532        22 455555432     23899999975544

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.83  E-value=0.089  Score=34.42  Aligned_cols=60  Identities=12%  Similarity=0.151  Sum_probs=35.2

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCceEE-e--eCC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDLRIA-L--SNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~~~~-~--~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|+++ .|+.++      .          .++...+ .  ...  .|.+.+++.+      |+
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e------DT   91 (117)
T d1jpth1          18 LRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE------DT   91 (117)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC------Cc
Confidence            8999999998744  6788763 232111      0          1111111 1  122  3677676655      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        92 AvYYCAr~~~  101 (117)
T d1jpth1          92 AVYYCARDTA  101 (117)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEeecCC
Confidence            9999976544

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.026  Score=35.53  Aligned_cols=63  Identities=16%  Similarity=0.331  Sum_probs=36.3

Q ss_pred             eEEEeeEeccCC--CEEEEEccCCeEeeccc--CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFSNNTVIAYVK--DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~dg~~i~~~~--~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.+.|.=+  -.|+|+ .||+.+...-  .......+|+..+.   .+..+++.   ....|.|.++...
T Consensus        23 ~tl~C~v~~f~P~~i~v~W~-~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~---~~~~ytC~V~H~~   92 (102)
T d1q0xl2          23 ATLVCTITDFYPGVVTVDWK-VDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWE---RHSSYSCQVTHEG   92 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHT---TCCEEEEEEEETT
T ss_pred             EEEEEEEeeeeCCCCEEEEE-ECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhC---CCCEEEEEEEECC
Confidence            789999998743  379997 5888765211  11123345643221   22222211   2567999998754

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.76  E-value=0.18  Score=33.16  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------eec----------ccCceEE-e--eCC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IAY----------VKDLRIA-L--SNG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~~----------~~~~~~~-~--~~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|+++ .|+.      |..          .++...+ .  ...  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e------Dt   91 (123)
T d1mqkh_          18 LKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE------DT   91 (123)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             EEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC------cc
Confidence            8999999997754  4688763 2322      110          1111111 1  122  3777777655      89


Q ss_pred             eEEEEEEEcCCCce----EEEEEEEEeccCCC
Q psy5697         117 TVYRCRASNEAGVI----LSRFVHVKADSRIP  144 (145)
Q Consensus       117 G~Y~C~A~N~~G~~----~s~~v~v~~~~~~p  144 (145)
                      ++|.|......+..    .-..|+|.+.-+.|
T Consensus        92 AvYYCAr~~~~~~~d~WG~GT~VTVsSa~~~p  123 (123)
T d1mqkh_          92 AMYYCVRHEYYYAMDYWGQGTTVTVSSAWRHP  123 (123)
T ss_dssp             EEEEEEEEETTTEEEEECCCEEEEECSSCCCC
T ss_pred             cceeEEecCCCccccccCCCEEEEEeCCCCCC
Confidence            99999765543321    13466776666555

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.75  E-value=0.023  Score=35.02  Aligned_cols=60  Identities=8%  Similarity=0.156  Sum_probs=37.2

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      +.|.|.|.|.-|+  .|+|. .||..+.... ......+|+.......  ++.   ....|.|.+.-+.
T Consensus        16 ~tl~Cl~~gF~P~~i~v~W~-~~g~~~~~~~-~~~~~~~gtys~~s~~--~~~---~~~~yTC~V~H~~   77 (86)
T d1hxma2          16 TNVACLVKEFYPKDIRINLV-SSKKITEFDP-AIVISPSGKYNAVKLG--KYE---DSNSVTCSVQHDN   77 (86)
T ss_dssp             TEEEEEEESCBSSCCEEEEE-CSSEEEECCC-EEEECTTSSEEEEEEE--EET---TTTTCEEEEEETT
T ss_pred             CEEEEEEeeEECCCCEEEEE-ECCEEccCcE-EeeeccCCcEEEEEEE--ecC---CCCEEEEEEEECC
Confidence            7899999998765  57896 6888765432 2344566754433221  111   2446999998653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.69  E-value=0.14  Score=33.58  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|++. .|+.++      .          .++...+ .++  .  .|.|..++.+      |+
T Consensus        18 l~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e------Dt   91 (120)
T d1pg7x1          18 VKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN------DS   91 (120)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC------cc
Confidence            8999999997643  5889864 233221      0          1111111 211  2  4777777655      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        92 A~YYCAr~~~  101 (120)
T d1pg7x1          92 AVYYCAREDF  101 (120)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEeeecCC
Confidence            9999987543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.67  E-value=0.087  Score=34.40  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=37.0

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------e---------cccCceEE-ee-CC---cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------A---------YVKDLRIA-LS-NG---SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~---------~~~~~~~~-~~-~G---sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|....  .+.|++. .|+-+      .         ..++...+ .+ ..   .|.|.+++.+      |++
T Consensus        18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e------DtA   91 (116)
T d7fabh1          18 LSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA------DTA   91 (116)
T ss_dssp             EEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GCE
T ss_pred             EEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc------cce
Confidence            8999999998765  5788764 23211      1         11111112 11 11   4777777665      899


Q ss_pred             EEEEEEEcCCC
Q psy5697         118 VYRCRASNEAG  128 (145)
Q Consensus       118 ~Y~C~A~N~~G  128 (145)
                      +|.|...-..|
T Consensus        92 vYyCAr~~~~~  102 (116)
T d7fabh1          92 VYYCARNLIAG  102 (116)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEeeeecCCC
Confidence            99997654433

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.57  E-value=0.091  Score=34.80  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------eec----------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IAY----------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~~----------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|++. .|+.      |..          .++...+ .++  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e------Dt   91 (126)
T d1dfbh1          18 LRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE------DM   91 (126)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             eEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC------cc
Confidence            9999999997754  5788763 2322      111          1111111 121  1  4777776655      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      ++|.|......
T Consensus        92 avYYCAr~~~~  102 (126)
T d1dfbh1          92 ALYYCVKGRDY  102 (126)
T ss_dssp             EEEEEEEEECC
T ss_pred             eEEEEEeccCc
Confidence            99999876543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.56  E-value=0.091  Score=34.46  Aligned_cols=20  Identities=15%  Similarity=0.081  Sum_probs=16.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|.-..  .+.|++.
T Consensus        18 l~LsC~~SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1          18 VKISCKASGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEcCCCCcCCceEcccc
Confidence            8999999997765  5788763

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.045  Score=34.58  Aligned_cols=71  Identities=7%  Similarity=0.243  Sum_probs=38.2

Q ss_pred             eEEEeeEecc-CC-CEEEEEccCCeEeecccCce---EEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCc-eE
Q psy5697          61 GLELTRQTRY-EP-SQLGWRFSNNTVIAYVKDLR---IALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGV-IL  131 (145)
Q Consensus        61 ~~L~C~a~G~-P~-P~i~W~~~dg~~i~~~~~~~---~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~-~~  131 (145)
                      +.|.|.|.|. |. -.|+|. .||+.+.......   ....+|+..+.   .+..+++.   ....|.|.+..+.-. .+
T Consensus        23 ~~L~Clv~~f~P~~i~v~W~-~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~---~~~~ytC~V~H~~~~~pv   98 (107)
T d1c5cl2          23 ASVVCLLNNFYPREAKVQWK-VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYE---KHKVYACEVTHQGLSSPV   98 (107)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHT---TCCEEEEEEECTTCSSCE
T ss_pred             eEEEEEEEEeeCCCCEEEEE-ECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhC---CCCEEEEEEEECCCCCce
Confidence            8999999995 54 389997 5877654211000   11234543221   12222221   134799999876433 34


Q ss_pred             EEEE
Q psy5697         132 SRFV  135 (145)
Q Consensus       132 s~~v  135 (145)
                      .+.+
T Consensus        99 ~ksi  102 (107)
T d1c5cl2          99 TKSF  102 (107)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.53  E-value=0.064  Score=34.99  Aligned_cols=57  Identities=12%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             eEEEeeEeccCC--CEEEEEcc-CCeEee------c----------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS-NNTVIA------Y----------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~-dg~~i~------~----------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-.  -.+.|+++ .|+.++      .          .++...+ .+  ..  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e------Dt   91 (115)
T d1f3dh1          18 VKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE------DS   91 (115)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC------Cc
Confidence            999999999753  35888763 232221      0          1111111 11  12  4788777665      89


Q ss_pred             eEEEEEE
Q psy5697         117 TVYRCRA  123 (145)
Q Consensus       117 G~Y~C~A  123 (145)
                      ++|.|..
T Consensus        92 AvYYCAr   98 (115)
T d1f3dh1          92 AVYYCAN   98 (115)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999954

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.39  E-value=0.077  Score=35.41  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             eEEEeeEeccCC----CEEEEEcc-CCeEee------c---------ccCc-eEEeeC--C--cEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP----SQLGWRFS-NNTVIA------Y---------VKDL-RIALSN--G--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~----P~i~W~~~-dg~~i~------~---------~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.++|...    .-+.|++. .|+.++      .         .++. ....++  .  .|.|.+++.+      |
T Consensus        18 l~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e------D   91 (132)
T d1tjgh1          18 LTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV------D   91 (132)
T ss_dssp             EEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             eEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc------c
Confidence            899999998663    25889864 222211      0         1111 111222  1  3788777665      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +++|.|.....
T Consensus        92 tAvYYCAr~~~  102 (132)
T d1tjgh1          92 TATYFCAHRRG  102 (132)
T ss_dssp             CEEEEEEEECC
T ss_pred             ceEEEEEEecC
Confidence            99999986643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.36  E-value=0.091  Score=34.41  Aligned_cols=20  Identities=10%  Similarity=0.122  Sum_probs=16.5

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|++.
T Consensus        18 l~lsC~~SG~~~~~y~~~WvRQ   39 (118)
T d2jelh1          18 VKISCKGSGYTFTTYAMHWVKQ   39 (118)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEEEEEcCCCCCCCceeccee
Confidence            8999999998865  6888763

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.024  Score=35.67  Aligned_cols=65  Identities=14%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccCceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCCce
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAGVI  130 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G~~  130 (145)
                      +.|.|.|.|.=+.  .|+| +.||..............+|+..+.   .+..+++    ....|.|.+..+.+..
T Consensus        23 ~tl~Cl~~~f~P~~i~v~W-~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w----~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          23 AALGCLVKDYFPEPVTVSW-NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL----GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             EEEEEEEEEEBSSCCEEEE-GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG----GTCCCEEEEEEGGGTE
T ss_pred             EEEEEEEEeEeCCCeEEEE-CcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc----CCCeEEEEEEeCCCCE
Confidence            8999999886543  7999 4566432111111123345533221   1222222    1346999999876553

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.35  E-value=0.068  Score=35.13  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=35.4

Q ss_pred             eEEEeeEeccCC--C--EEEEEcc-CCeEee------c---------ccCc-eEEeeCC----cEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP--S--QLGWRFS-NNTVIA------Y---------VKDL-RIALSNG----SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~--P--~i~W~~~-dg~~i~------~---------~~~~-~~~~~~G----sL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.++|...  .  .+.|++. .|+.++      .         .++. ....++.    .|.|.+++.+      |
T Consensus        18 l~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e------D   91 (120)
T d1ai1h1          18 LSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE------D   91 (120)
T ss_dssp             EEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG------G
T ss_pred             EEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc------c
Confidence            899999999764  2  5789764 232221      1         1111 1122211    4777777665      8


Q ss_pred             CeEEEEEEEcC
Q psy5697         116 STVYRCRASNE  126 (145)
Q Consensus       116 ~G~Y~C~A~N~  126 (145)
                      +++|.|.....
T Consensus        92 tAvYYCAr~~~  102 (120)
T d1ai1h1          92 TAMYYCSRENH  102 (120)
T ss_dssp             CEEEEEEEEET
T ss_pred             eeEEEEEecCC
Confidence            99999975443

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.047  Score=33.80  Aligned_cols=53  Identities=9%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             ccC-eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEc
Q psy5697          58 RTR-GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASN  125 (145)
Q Consensus        58 ~~g-~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N  125 (145)
                      ..| +.|.|..   ...+|+|+ +||..+.....     ...+|-+-.... |     ..|.|+|.+++
T Consensus        21 ~dGsV~L~Cn~---~~k~i~W~-kdg~~i~~~~~-----~~ktlnLG~~~~-D-----PRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTCGL---TDKTIKWL-KDGSIISPLNA-----TKNTWNLGNNAK-D-----PRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEECSS---SCSCEEEE-ETTEECCCSSC-----CSSCCEEEETTS-C-----CEEEEEEEESS
T ss_pred             cCCeEEEEeCC---CCcEEEEe-cCCceeccccc-----ccceeecCCccc-C-----CCcceEcCCCc
Confidence            445 9999943   44699997 58877642211     112333332221 1     48999997654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.14  E-value=0.21  Score=33.09  Aligned_cols=60  Identities=8%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------ecc----------cCc-eEEeeCC----cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------AYV----------KDL-RIALSNG----SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~~~----------~~~-~~~~~~G----sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|....  .+.|++. .|+-+      ...          ++. ....++.    .|.+..++.+      |+
T Consensus        17 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e------Dt   90 (130)
T d1rhhb1          17 VQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD------DT   90 (130)
T ss_dssp             EEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             eEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC------Cc
Confidence            8999999997654  5788763 33221      111          111 1222222    3667666555      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        91 AvYyCAr~~~  100 (130)
T d1rhhb1          91 AVYYCARDFG  100 (130)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEeecC
Confidence            9999987644

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.09  E-value=0.17  Score=33.18  Aligned_cols=20  Identities=10%  Similarity=0.160  Sum_probs=16.3

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|.++
T Consensus        18 l~LsC~vSG~s~~~~~~~WvRQ   39 (120)
T d1ad9b1          18 VKVSCKASGYTFTDYYINWMRQ   39 (120)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEEEEEcCCCCcCCccccceE
Confidence            8999999997765  5788763

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.071  Score=33.40  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=37.3

Q ss_pred             cCeEEEeeEecc-CC---CEEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          59 TRGLELTRQTRY-EP---SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        59 ~g~~L~C~a~G~-P~---P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      ..+.|.|.|+|. |.   -+++|. .||..+.... .......+|+..+.   .+..+++.   ....|.|.++.+..
T Consensus        19 ~~~~L~C~~~gf~P~~~~v~~~W~-~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~---~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          19 RTPEVTCVVVDVSHEDPEVKFNWY-VDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL---NGKEYKCKVSNKAL   92 (105)
T ss_dssp             SCCEEEEEEEEECSSSCCCEEEEE-ETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHH---TTCCEEEEEECTTS
T ss_pred             CceEEEEEEEEEeCCCCeEEEEEe-eCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcC---CCCEEEEEEEeCCC
Confidence            348999999995 43   367786 4777654321 11233456653332   23333221   13379999997654

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=94.06  E-value=0.023  Score=35.76  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=34.1

Q ss_pred             eEEEeeEec-cCC-CEEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTR-YEP-SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G-~P~-P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.|.| +|. -.|+|. .||....... .......+|+..+.   .+..+++.   ....|.|.++-+
T Consensus        22 ~tl~C~v~gf~P~~i~v~W~-~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~---~~~~ytC~V~H~   89 (102)
T d1igtb4          22 VTLTCMVTDFMPEDIYVEWT-NNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWV---ERNSYSCSVVHE   89 (102)
T ss_dssp             EEEEEEEEEEBSSCCEEEEE-ETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHH---TCCCEEEEEECT
T ss_pred             EEEEEEEEEeECCCcEEEEE-ECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcC---CCCEEEEEEEeC
Confidence            899999999 464 589997 5776643211 11123345532221   12222111   134699999864

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.17  Score=30.80  Aligned_cols=54  Identities=13%  Similarity=0.037  Sum_probs=33.7

Q ss_pred             eEEEeeEeccCCC--EEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|..+..+.+  --.|. ++|+.+.+.....   ..-...|.   .     +.++|.|.|+--++
T Consensus        15 ~~LtCnLt~s~~~i~ghrW~-K~gkvl~ed~~~~---~~tey~V~---~-----~D~SGeY~CVFl~~   70 (80)
T d3b5ha2          15 ILLTCSLNDSATEVTGHRWL-KGGVVLKEDALPG---QKTEFKVD---S-----DDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEEEEEEESCSSCCCEEEEE-SSSEEEECTTCCC---SEEEEEEC---G-----GGCCEEEEEEEEST
T ss_pred             EEEEEECCCCCCceeeeEEe-eCCEEccccCCCC---CceEEEEe---c-----CCCCceEEEEEcCC
Confidence            7899998776654  35897 5888887533110   00123332   1     22799999997654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.05  E-value=0.18  Score=33.23  Aligned_cols=59  Identities=15%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee----------------cccCc-eEEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA----------------YVKDL-RIALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~----------------~~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|++. .|+-++                ..++. ....++  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e------Dt   91 (125)
T d1rihh1          18 MKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE------DS   91 (125)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc------cc
Confidence            9999999997754  5788753 232211                01111 111222  2  3777676655      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|....
T Consensus        92 AvYYCAR~~  100 (125)
T d1rihh1          92 AVYYCARES  100 (125)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEeeeC
Confidence            999998654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.92  E-value=0.11  Score=34.14  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=35.6

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------ee----------cccCceEE-eeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IA----------YVKDLRIA-LSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~----------~~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-.-  .+.|++. .|+.      |.          ..++...+ .++  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e------Dt   91 (121)
T d1ol0a_          18 LRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE------DT   91 (121)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             eEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc------cc
Confidence            8999999997643  4788753 2322      11          11111122 221  2  4777777655      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      ++|.|......
T Consensus        92 AvYYCAr~~~~  102 (121)
T d1ol0a_          92 AVYYCAREPRI  102 (121)
T ss_dssp             EEEEEEECCST
T ss_pred             eEEEEEEecCc
Confidence            99999765433

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=93.90  E-value=0.099  Score=34.44  Aligned_cols=58  Identities=12%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             eEEEeeEeccCCC----EEEEEcc-CCeEee------c---------ccCceEE-eeC--C--cEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS----QLGWRFS-NNTVIA------Y---------VKDLRIA-LSN--G--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~P----~i~W~~~-dg~~i~------~---------~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.++|...-    .+.|++. .|+.++      .         .++...+ .++  .  .|.|.+++.+      |
T Consensus        18 v~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e------D   91 (123)
T d1r0ah1          18 FRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA------D   91 (123)
T ss_dssp             EEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG------G
T ss_pred             eEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc------c
Confidence            8999999986532    4689863 232211      1         1111111 111  1  4888777665      8


Q ss_pred             CeEEEEEEE
Q psy5697         116 STVYRCRAS  124 (145)
Q Consensus       116 ~G~Y~C~A~  124 (145)
                      +++|.|...
T Consensus        92 sAvYyCAr~  100 (123)
T d1r0ah1          92 TAIYYCAQS  100 (123)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeccc
Confidence            999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.90  E-value=0.047  Score=36.07  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=16.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|....  .+.|+++
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ   39 (122)
T d1q9rb1          18 LRLSCATSGFTFTDYYMSWVRQ   39 (122)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEcCCCCcCCccCcccc
Confidence            8999999998765  5789863

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=93.87  E-value=0.15  Score=32.76  Aligned_cols=63  Identities=16%  Similarity=0.284  Sum_probs=36.4

Q ss_pred             CeEEEeeEecc-CC---CEEEEEccCCeEeeccc-CceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          60 RGLELTRQTRY-EP---SQLGWRFSNNTVIAYVK-DLRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        60 g~~L~C~a~G~-P~---P~i~W~~~dg~~i~~~~-~~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      .+.|.|.|+|. |.   -+|+|. .||..+.... .......+|+..+.   .+..+++.   ....|+|.++..
T Consensus        34 ~~~L~C~v~gf~P~~~~v~v~W~-~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~---~g~~ytC~V~H~  104 (119)
T d1igtb3          34 SPIVTCVVVDVSEDDPDVQISWF-VNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM---SGKEFKCKVNNK  104 (119)
T ss_dssp             CCEEEEEEEEECTTCCCCEEEEE-ETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH---TTCEEEEEEECT
T ss_pred             ceEEEEEeecccCCCCcEEEEEe-eCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhC---CCCeEEEEEEEC
Confidence            38999999995 43   478896 5777664321 11234456643332   23332221   134699999975

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=93.86  E-value=0.25  Score=32.17  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee---------------cccCc-eEEeeC--C--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA---------------YVKDL-RIALSN--G--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~---------------~~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|...-  .+.|++. .|+.++               ..++. ....++  .  .|.|.+++.+      |++
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~e------DtA   91 (118)
T d1lo4h1          18 LTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSE------DTA   91 (118)
T ss_dssp             EEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGG------GCE
T ss_pred             eEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCC------cce
Confidence            8999999998755  6788764 232221               01111 111222  1  4777666554      899


Q ss_pred             EEEEEEEcCCC
Q psy5697         118 VYRCRASNEAG  128 (145)
Q Consensus       118 ~Y~C~A~N~~G  128 (145)
                      +|.|...-..+
T Consensus        92 ~YyCAr~~~~~  102 (118)
T d1lo4h1          92 IYYCARGTSFV  102 (118)
T ss_dssp             EEEEEEEETTT
T ss_pred             EEEecccCCCC
Confidence            99997654433

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.74  E-value=0.23  Score=32.48  Aligned_cols=59  Identities=8%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             eEEEeeEeccCC--CEEEEEcc-CCeEee------c----------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS-NNTVIA------Y----------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~-dg~~i~------~----------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...  -.+.|+++ .|+.++      .          .++...+ .+  ..  .|.|.+++.+      |+
T Consensus        18 v~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e------Dt   91 (121)
T d1j05b_          18 VKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE------DT   91 (121)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC------cc
Confidence            899999999763  46889764 333211      0          1111111 11  11  3778777665      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|....
T Consensus        92 AvYYCAr~~  100 (121)
T d1j05b_          92 AVYYCAPFG  100 (121)
T ss_dssp             EEEEEEEEB
T ss_pred             eEEEeEeec
Confidence            999997643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.73  E-value=0.25  Score=32.15  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=16.3

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|....  .+.|++.
T Consensus        18 l~lsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jnhb1          18 VKLSCRTSGYSFTTYWMQWVRQ   39 (117)
T ss_dssp             EEEEEEEESSCSSSSEEEEEEE
T ss_pred             EEEEEEEcCCCCCCCceeeeee
Confidence            8999999998765  5788763

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.73  E-value=0.12  Score=33.68  Aligned_cols=19  Identities=11%  Similarity=0.125  Sum_probs=15.6

Q ss_pred             eEEEeeEeccCCC--EEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~   79 (145)
                      +.|.|.++|....  .+.|.+
T Consensus        18 l~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1          18 VKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             EEEEEEEESSCGGGSCEEEEE
T ss_pred             EEEEEEEccCccccCceEeee
Confidence            8999999997765  467876

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.67  E-value=0.16  Score=33.48  Aligned_cols=20  Identities=10%  Similarity=-0.037  Sum_probs=16.1

Q ss_pred             eEEEeeEeccCC--CEEEEEcc
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~   80 (145)
                      +.|.|.++|...  =.+.|+++
T Consensus        18 l~LsC~~SG~~~s~y~~~W~RQ   39 (127)
T d1i3ua_          18 LKLSCEASGDSIGTYVIGWFRQ   39 (127)
T ss_dssp             EEEEEEEESSCGGGSEEEEEEE
T ss_pred             eEEEEEEcCCCCCCCceEeeee
Confidence            999999999764  35789864

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.64  E-value=0.03  Score=37.04  Aligned_cols=19  Identities=11%  Similarity=-0.046  Sum_probs=15.4

Q ss_pred             eEEEeeEeccCCC--EEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~   79 (145)
                      +.|.|.++|.-.-  .+.|++
T Consensus        18 l~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1          18 LKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             EEEEEEEESSCGGGEEEEEEE
T ss_pred             EEEEEEEcCCCCcCCceeece
Confidence            8999999997754  468876

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.63  E-value=0.19  Score=32.33  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c------------ccCc-eEEee--CC--cEEEcCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y------------VKDL-RIALS--NG--SLMFPPFPETGFRPDV  114 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~------------~~~~-~~~~~--~G--sL~i~~~~~~~~~~~~  114 (145)
                      +.|.|.++|.-..  .+.|.+. .|+-++      .            .++. ....+  ..  .|.|.+++.+      
T Consensus        18 l~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~e------   91 (109)
T d2ck0h1          18 LKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTE------   91 (109)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------
T ss_pred             eEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHh------
Confidence            8999999997765  6888763 232211      0            0111 11221  22  4777677655      


Q ss_pred             CCeEEEEEEEc
Q psy5697         115 HSTVYRCRASN  125 (145)
Q Consensus       115 d~G~Y~C~A~N  125 (145)
                      |+++|.|...+
T Consensus        92 DTAvYYCAr~~  102 (109)
T d2ck0h1          92 DTGIYYCVRGR  102 (109)
T ss_dssp             GCEEEEEEEEC
T ss_pred             HCEEEEEEEcC
Confidence            89999997543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.60  E-value=0.072  Score=35.56  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c------------ccCceEE-ee--CC--cEEEcCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y------------VKDLRIA-LS--NG--SLMFPPFPETGFRPDV  114 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~------------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~  114 (145)
                      +.|.|.++|...-  .+.|++. .|+.++      .            .++...+ .+  ..  .|.+.+++.+      
T Consensus        18 l~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~e------   91 (131)
T d3c2ah1          18 LRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTE------   91 (131)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG------
T ss_pred             eEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccC------
Confidence            9999999997754  6788763 232211      0            1111111 11  12  4777677655      


Q ss_pred             CCeEEEEEEE
Q psy5697         115 HSTVYRCRAS  124 (145)
Q Consensus       115 d~G~Y~C~A~  124 (145)
                      |+++|.|...
T Consensus        92 DTAvYYCAR~  101 (131)
T d3c2ah1          92 DTAVYSCTTD  101 (131)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEecc
Confidence            8999999875

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.57  E-value=0.15  Score=33.14  Aligned_cols=20  Identities=10%  Similarity=0.087  Sum_probs=15.9

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|....  .+.|+++
T Consensus        18 l~LsC~~SG~~~s~~~~~WvRQ   39 (114)
T d1indh1          18 LKLSCAASGFTLSGETMSWVRQ   39 (114)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEECccCccCCceecccc
Confidence            8999999998654  5778764

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.36  E-value=0.14  Score=33.84  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=35.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------cc----------cCce-EEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------YV----------KDLR-IALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~~----------~~~~-~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-..  .+.|.+. .|+-++      ..          ++.. ...++  .  .|.+.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e------DT   91 (127)
T d2fx7h1          18 VTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE------DT   91 (127)
T ss_dssp             EEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc------cc
Confidence            8999999997654  4788753 332211      11          1111 11222  2  3677666655      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      ++|.|......
T Consensus        92 avYYCAR~~~~  102 (127)
T d2fx7h1          92 AVYYCAREGTT  102 (127)
T ss_dssp             EEEEEEEEEES
T ss_pred             eEEEEeecccc
Confidence            99999876543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.25  E-value=0.14  Score=33.43  Aligned_cols=59  Identities=10%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee---------------cccCce-EEee--CC--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA---------------YVKDLR-IALS--NG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~---------------~~~~~~-~~~~--~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|...-  .+.|+++ .|+.++               ..++.. ...+  ..  .|.|.+++.+      |++
T Consensus        18 l~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e------DtA   91 (117)
T d1c5db1          18 LSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE------DTA   91 (117)
T ss_dssp             EEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG------GCE
T ss_pred             eEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC------cce
Confidence            9999999998764  5788763 232221               011111 1111  11  4777777655      899


Q ss_pred             EEEEEEEc
Q psy5697         118 VYRCRASN  125 (145)
Q Consensus       118 ~Y~C~A~N  125 (145)
                      +|.|....
T Consensus        92 vYYCAr~~   99 (117)
T d1c5db1          92 IYFCTRED   99 (117)
T ss_dssp             EEEEEECC
T ss_pred             EEEEeccC
Confidence            99996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.24  E-value=0.12  Score=33.95  Aligned_cols=60  Identities=12%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCceEE-ee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDLRIA-LS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~~~~-~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|+++ .|+-++      .          .++...+ .+  ..  .|.+.+++.+      |+
T Consensus        18 l~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e------DT   91 (122)
T d1bz7b1          18 RKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE------DT   91 (122)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG------GC
T ss_pred             eEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc------Cc
Confidence            8999999998754  4688763 232111      0          1111111 11  12  4666666554      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|...+.
T Consensus        92 AvYYCAr~~~  101 (122)
T d1bz7b1          92 AIYYCTRGGT  101 (122)
T ss_dssp             EEEEEEEECC
T ss_pred             eEEEeecCCC
Confidence            9999976554

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.24  E-value=0.14  Score=33.46  Aligned_cols=58  Identities=16%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEe------ec----------ccCceEE-ee-C-C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVI------AY----------VKDLRIA-LS-N-G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i------~~----------~~~~~~~-~~-~-G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|++. .|+.+      ..          .++...+ .+ . .  .|.|.+++.+      |+
T Consensus        18 v~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e------Ds   91 (119)
T d1qnzh_          18 VKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD------DS   91 (119)
T ss_dssp             EEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG------GC
T ss_pred             EEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc------ce
Confidence            8999999997533  4889864 33221      11          1111111 11 1 2  4778777665      89


Q ss_pred             eEEEEEEE
Q psy5697         117 TVYRCRAS  124 (145)
Q Consensus       117 G~Y~C~A~  124 (145)
                      ++|.|...
T Consensus        92 AvYYCA~~   99 (119)
T d1qnzh_          92 AVYYCAIH   99 (119)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEe
Confidence            99999553

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.22  E-value=0.16  Score=33.54  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------eecc----------cCc-eEEee--CC--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IAYV----------KDL-RIALS--NG--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~~~----------~~~-~~~~~--~G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-..  .+.|+++ .|+.      |...          ++. ....+  ..  .|.|.+++.+      |+
T Consensus        17 l~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e------DT   90 (126)
T d1rjca1          17 LRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE------DT   90 (126)
T ss_dssp             EEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG------GC
T ss_pred             eEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc------cC
Confidence            8999999997655  4688763 2322      1111          111 11111  22  3777777655      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        91 AvYYCAr~~~  100 (126)
T d1rjca1          91 AMYYCAADTS  100 (126)
T ss_dssp             EEEEEEECCT
T ss_pred             ceeEEEeecc
Confidence            9999986543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.11  Score=32.52  Aligned_cols=26  Identities=4%  Similarity=0.051  Sum_probs=20.7

Q ss_pred             eEEEeeEecc-CCC-EEEEEccCCeEeec
Q psy5697          61 GLELTRQTRY-EPS-QLGWRFSNNTVIAY   87 (145)
Q Consensus        61 ~~L~C~a~G~-P~P-~i~W~~~dg~~i~~   87 (145)
                      +.|.|.|.|. |.. .|+|+ .||+.+..
T Consensus        23 ~tl~C~~~~f~P~~i~v~W~-~~g~~~~~   50 (108)
T d1ow0a2          23 VTLTCLARGFSPKDVLVRWL-QGSQELPR   50 (108)
T ss_dssp             EEEEEEEEEESSSCCEEEEE-ETTEECCG
T ss_pred             eEEEEEEEEeECCCEEEEEE-ECCeEcCC
Confidence            8999999995 544 89997 58887753

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=92.97  E-value=0.32  Score=32.04  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=35.2

Q ss_pred             eEEEeeEeccCC---CEEEEEcc-CCeEee------c---------ccC-ceEEeeC-C---cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP---SQLGWRFS-NNTVIA------Y---------VKD-LRIALSN-G---SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~---P~i~W~~~-dg~~i~------~---------~~~-~~~~~~~-G---sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...   -.+.|+++ .|+.++      .         .++ .....++ .   .|.|..++.+      |+
T Consensus        18 l~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e------Dt   91 (127)
T d3cx5j1          18 LSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE------DT   91 (127)
T ss_dssp             EEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc------cc
Confidence            899999999875   35899863 343321      0         011 1111111 1   3777666655      89


Q ss_pred             eEEEEEEEc
Q psy5697         117 TVYRCRASN  125 (145)
Q Consensus       117 G~Y~C~A~N  125 (145)
                      ++|.|....
T Consensus        92 AvYyCAr~~  100 (127)
T d3cx5j1          92 ATYYCARSE  100 (127)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEeeeec
Confidence            999997643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.93  E-value=0.29  Score=32.15  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=16.1

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|++.
T Consensus        18 l~LsC~~SG~~~~~~~~~W~RQ   39 (124)
T d2b1hh1          18 LKISCQTSGYSFSDYWIGWVRQ   39 (124)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEcCCCCcCCcCcccee
Confidence            8999999998754  4788763

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.91  E-value=0.43  Score=31.65  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=35.5

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeEee------c----------ccCc-eEEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTVIA------Y----------VKDL-RIALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~i~------~----------~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|++. .|+-++      .          .++. ....++  .  .|.+.+++.+      |+
T Consensus        17 l~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e------Dt   90 (133)
T d1rzfh1          17 VKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD------DT   90 (133)
T ss_dssp             EEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC------CC
Confidence            8999999997654  4778753 232211      0          1111 111222  2  3666666554      89


Q ss_pred             eEEEEEEEcCCCc
Q psy5697         117 TVYRCRASNEAGV  129 (145)
Q Consensus       117 G~Y~C~A~N~~G~  129 (145)
                      ++|.|......+.
T Consensus        91 A~YYCAr~~~~~~  103 (133)
T d1rzfh1          91 AVYYCASNSIAGV  103 (133)
T ss_dssp             EEEEEEEEECCC-
T ss_pred             EEEEeeeccCCcc
Confidence            9999976544443

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.86  E-value=0.2  Score=32.80  Aligned_cols=20  Identities=5%  Similarity=0.013  Sum_probs=15.8

Q ss_pred             eEEEeeEeccCC--CEEEEEcc
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~   80 (145)
                      +.|.|.++|...  =.+.|++.
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_          18 MKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             EEEEEEEESSCTTTCEEEEEEE
T ss_pred             eEEEEEECCccCcCCceEeeee
Confidence            899999999864  35788763

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.85  E-value=0.28  Score=31.87  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=15.2

Q ss_pred             eEEEeeEeccCC--CEEEEEc
Q psy5697          61 GLELTRQTRYEP--SQLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~   79 (145)
                      +.|.|.++|.-.  -.+.|.+
T Consensus        18 l~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1          18 VKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             EEEEEEEESSCGGGSEEEEEE
T ss_pred             EEEEEEEcccCCCCCceEeee
Confidence            899999999653  4578876

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=92.77  E-value=0.25  Score=32.06  Aligned_cols=60  Identities=10%  Similarity=0.134  Sum_probs=35.9

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE---e---ec---------ccCc-eEEee--CC--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV---I---AY---------VKDL-RIALS--NG--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~---i---~~---------~~~~-~~~~~--~G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|...-  .+.|++. .|+-   +   ..         .++. ....+  ..  .|.|.+++.+      |++
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e------DTA   91 (116)
T d1a2yb_          18 LSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD------DTA   91 (116)
T ss_dssp             EEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG------GCE
T ss_pred             eEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec------cce
Confidence            8999999997754  4778764 2222   1   10         1111 11111  12  4788777665      899


Q ss_pred             EEEEEEEcC
Q psy5697         118 VYRCRASNE  126 (145)
Q Consensus       118 ~Y~C~A~N~  126 (145)
                      +|.|.....
T Consensus        92 vYYCAr~~~  100 (116)
T d1a2yb_          92 RYYCARERD  100 (116)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEeCC
Confidence            999986543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.76  E-value=0.37  Score=31.48  Aligned_cols=20  Identities=15%  Similarity=0.162  Sum_probs=15.8

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|.+.
T Consensus        18 l~LsC~~SG~s~s~y~~~WvRQ   39 (121)
T d2p49b1          18 LRLSCAASGYAYTYIYMGWFRQ   39 (121)
T ss_dssp             EEEEEEEESCSSCCSEEEEEEE
T ss_pred             eEEEEEEcCCCcccCceeeccC
Confidence            9999999997644  5788764

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=92.64  E-value=0.44  Score=31.32  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=35.1

Q ss_pred             eEEEeeEeccCC--CEEEEEcc-CCeEee------c----------ccCc-eEEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS-NNTVIA------Y----------VKDL-RIALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~-dg~~i~------~----------~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-.  -.+.|+++ .|+.++      .          .++. ....++  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e------DT   91 (127)
T d2fb4h1          18 LRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE------DT   91 (127)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             eEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec------ce
Confidence            899999999764  35778763 222211      0          1111 111222  2  3666666554      89


Q ss_pred             eEEEEEEEcCC
Q psy5697         117 TVYRCRASNEA  127 (145)
Q Consensus       117 G~Y~C~A~N~~  127 (145)
                      ++|.|......
T Consensus        92 A~YYCAr~~~~  102 (127)
T d2fb4h1          92 GVYFCARDGGH  102 (127)
T ss_dssp             EEEEEEEECSS
T ss_pred             eEEEEEEecCC
Confidence            99999876543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.61  E-value=0.26  Score=32.59  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             eEEEeeEeccCCC--EEEEEcc-CCeE------ee----------cccCc-eEEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS-NNTV------IA----------YVKDL-RIALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~-dg~~------i~----------~~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|...-  .+.|.++ .|+-      |.          ..++. ....++  .  .|.+.+++.+      |+
T Consensus        18 l~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e------DT   91 (128)
T d2nxyd1          18 VKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD------DT   91 (128)
T ss_dssp             EEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             EEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc------Cc
Confidence            8999999998765  4577653 2211      11          01111 112222  2  3666666554      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        92 A~YYCAr~~~  101 (128)
T d2nxyd1          92 AVYFCAGVYE  101 (128)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEeEEec
Confidence            9999997654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.58  E-value=0.23  Score=32.82  Aligned_cols=19  Identities=16%  Similarity=0.132  Sum_probs=15.6

Q ss_pred             eEEEeeEeccCCC--EEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~   79 (145)
                      +.|.|.++|...-  .+.|++
T Consensus        18 l~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1          18 VKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             EEEEEEEESSCGGGSCEEEEE
T ss_pred             EEEEEEEcCCCCCCCCEEEEE
Confidence            8999999997754  578876

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.47  E-value=0.4  Score=31.42  Aligned_cols=58  Identities=10%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             eEEEeeEeccCC----CEEEEEcc-CCeEee------c---------ccCc-eEEeeC--C--cEEEcCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP----SQLGWRFS-NNTVIA------Y---------VKDL-RIALSN--G--SLMFPPFPETGFRPDVH  115 (145)
Q Consensus        61 ~~L~C~a~G~P~----P~i~W~~~-dg~~i~------~---------~~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d  115 (145)
                      +.|.|.++|.-.    -.+.|++. .|+.+.      .         .++. ....++  .  .|.|.+++.+      |
T Consensus        18 v~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e------D   91 (126)
T d1etzb1          18 LSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS------D   91 (126)
T ss_dssp             EEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------G
T ss_pred             EEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc------c
Confidence            899999998643    35679753 222111      0         0111 112221  1  4888777665      8


Q ss_pred             CeEEEEEEE
Q psy5697         116 STVYRCRAS  124 (145)
Q Consensus       116 ~G~Y~C~A~  124 (145)
                      +++|.|...
T Consensus        92 tAvYyCAr~  100 (126)
T d1etzb1          92 TATYHCARR  100 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             cceEEEEEe
Confidence            999999854

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.37  E-value=0.45  Score=31.23  Aligned_cols=60  Identities=8%  Similarity=0.169  Sum_probs=34.8

Q ss_pred             eEEEeeEeccCC--CEEEEEcc-CCeEee------cc----------cCc-eEEeeC--C--cEEEcCCCCCCCCCCCCC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS-NNTVIA------YV----------KDL-RIALSN--G--SLMFPPFPETGFRPDVHS  116 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~-dg~~i~------~~----------~~~-~~~~~~--G--sL~i~~~~~~~~~~~~d~  116 (145)
                      +.|.|.++|.-.  -.+.|+++ .|+.++      ..          ++. ....++  .  .|.|.+++.+      |+
T Consensus        18 l~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e------DT   91 (125)
T d1op3h1          18 LILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE------DT   91 (125)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG------GC
T ss_pred             eEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc------cc
Confidence            899999999664  35788763 232211      10          111 111222  2  3667666655      89


Q ss_pred             eEEEEEEEcC
Q psy5697         117 TVYRCRASNE  126 (145)
Q Consensus       117 G~Y~C~A~N~  126 (145)
                      ++|.|.....
T Consensus        92 AvYYCAr~~~  101 (125)
T d1op3h1          92 AIYYCARKGS  101 (125)
T ss_dssp             EEEEEEEECC
T ss_pred             eeEeEeeccC
Confidence            9999986543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.35  E-value=0.54  Score=30.84  Aligned_cols=19  Identities=21%  Similarity=0.074  Sum_probs=15.4

Q ss_pred             eEEEeeEeccCCC--EEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~   79 (145)
                      +.|.|.++|...-  .+.|++
T Consensus        17 l~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1          17 LKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             EEEEEEEESSCTTTEEEEEEE
T ss_pred             eEEEEEEccCCCCCCCCccee
Confidence            8999999998754  467875

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.17  E-value=0.23  Score=32.93  Aligned_cols=20  Identities=10%  Similarity=-0.004  Sum_probs=16.0

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|++.
T Consensus        18 l~LsC~~SG~~~s~y~~~WvRQ   39 (130)
T d1rzga1          18 VKVSCKASGGTFSNYAINWVRQ   39 (130)
T ss_dssp             EEEEEECCSSCGGGCCEEEEEE
T ss_pred             EEEEEEEcCCCCCCCceEcccc
Confidence            8999999997654  6888763

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=92.07  E-value=0.12  Score=32.59  Aligned_cols=62  Identities=16%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             eEEEeeEecc-CCC-EEEEEccCCeEeecccC-ceEEeeCCcEEEc---CCCCCCCCCCCCCeEEEEEEEcCCC
Q psy5697          61 GLELTRQTRY-EPS-QLGWRFSNNTVIAYVKD-LRIALSNGSLMFP---PFPETGFRPDVHSTVYRCRASNEAG  128 (145)
Q Consensus        61 ~~L~C~a~G~-P~P-~i~W~~~dg~~i~~~~~-~~~~~~~GsL~i~---~~~~~~~~~~~d~G~Y~C~A~N~~G  128 (145)
                      +.|.|.|.|. |.. .|+|. .||..+..... ......+|+....   .+..+++     ...|.|.+.-+..
T Consensus        27 ~~l~Clv~~f~P~~i~v~W~-~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w-----~~~ytC~V~H~s~   94 (107)
T d1hxmb2          27 GTYLCLLEKFFPDVIKIHWE-EKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-----DKEHRCIVRHENN   94 (107)
T ss_dssp             EEEEEEEEEESSCCEEEEEE-ESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-----GSCEEEEEEETTS
T ss_pred             EEEEEEEeEEeCCceEEEEE-ECCeEccCCEEccceecCCCeEEEEEEEEEecccC-----CCeEEEEEEECCC
Confidence            8999999994 433 69997 47765542110 0112234432221   2223321     2269999987633

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=91.87  E-value=0.51  Score=30.61  Aligned_cols=20  Identities=10%  Similarity=0.106  Sum_probs=15.5

Q ss_pred             eEEEeeEeccCC--CEEEEEcc
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~   80 (145)
                      +.|.|.++|...  =.+.|.+.
T Consensus        18 l~LsC~~SG~~~~~~~~~WvRQ   39 (118)
T d1ct8b1          18 VKLSCKTSGFTFSSSYINWLKQ   39 (118)
T ss_dssp             EEEEEEEESSCSTTCEEEEEEE
T ss_pred             EEEEEEEccccCCCCCCcccEE
Confidence            899999999764  36788753

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.013  Score=36.90  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             CeEEEeeEecc--CC-CEEEEEccCCeEeecccCceEEeeCCcEE---EcCCCCCCCCCCCCCeEEEEEEEcCC
Q psy5697          60 RGLELTRQTRY--EP-SQLGWRFSNNTVIAYVKDLRIALSNGSLM---FPPFPETGFRPDVHSTVYRCRASNEA  127 (145)
Q Consensus        60 g~~L~C~a~G~--P~-P~i~W~~~dg~~i~~~~~~~~~~~~GsL~---i~~~~~~~~~~~~d~G~Y~C~A~N~~  127 (145)
                      .+.|.|.|.|.  |. -.|+|.+ +|....... ......+|+..   ...+..+++.   ....|+|.+....
T Consensus        20 ~~tL~C~v~~f~~p~~i~v~W~~-~~~~~~~~~-~~~~~~~gt~s~~S~L~v~~~~W~---~g~~ftC~V~H~~   88 (101)
T d1ow0a1          20 EANLTCTLTGLRDASGVTFTWTP-SSGKSAVQG-PPERDLCGCYSVSSVLPGCAEPWN---HGKTFTCTAAYPE   88 (101)
T ss_dssp             SCCCEEEETTCCSCCCCCCCBSS-CSSCCCEEC-CCCCCSTTCCCEEEECTTTHHHHH---HTCEEEEEECCSS
T ss_pred             CeEEEEEEeCCCCCcceEEEEEE-CCceeeeec-ceEECCCCCEEEEEEEEEcHHHcC---CCCeEEEEEEeCC
Confidence            38999999995  43 3799964 443321111 11234556422   2233332210   1348999998653

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.55  E-value=0.3  Score=32.10  Aligned_cols=20  Identities=10%  Similarity=0.049  Sum_probs=16.1

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|.++
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ   39 (124)
T d1yedb1          18 VKLSCKTSGYIFTSYWIHWLKQ   39 (124)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEEEcCCCccCCccccceE
Confidence            8999999998755  5788763

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.21  Score=30.78  Aligned_cols=57  Identities=14%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             eEEEeeEeccCC-CEEEEEccCCeE-eecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy5697          61 GLELTRQTRYEP-SQLGWRFSNNTV-IAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNEAGVILSRFVHVK  138 (145)
Q Consensus        61 ~~L~C~a~G~P~-P~i~W~~~dg~~-i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~v~v~  138 (145)
                      +.|.|   |.|. -.|+|. +|+.. +. .       .+.++.+. +     ....|.|.|+|. .  -|+.++..+.+.
T Consensus        24 V~L~C---~t~eE~~I~W~-kd~~se~~-~-------~GntltV~-V-----kE~~~aGnYTCh-k--~g~~Lnht~lLi   82 (87)
T d3d85d1          24 VVLTC---DTPEEDGITWT-LDQSSEVL-G-------SGKTLTIQ-V-----KEFGDAGQYTCH-K--GGEVLSHSLLLL   82 (87)
T ss_dssp             EEEEC---SSSCCSSCEEE-ETTCCCCC-E-------ESSEEEEE-E-----CSGGGCEEEEEE-E--TTEEEEEEEEEE
T ss_pred             EEEec---CCCcccccEEe-eCCccccc-c-------CCCEEEEE-E-----EeccCCcceeEe-C--CCcEeeeEEEEE
Confidence            88999   4443 369997 56533 11 1       12234432 1     112379999996 3  399888865554

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.26  E-value=0.3  Score=31.24  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             eEEEeeEeccCC--CEEEEEcc-CCeEe------e---------cccCceEE-eeC--C--cEEEcCCCCCCCCCCCCCe
Q psy5697          61 GLELTRQTRYEP--SQLGWRFS-NNTVI------A---------YVKDLRIA-LSN--G--SLMFPPFPETGFRPDVHST  117 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~-dg~~i------~---------~~~~~~~~-~~~--G--sL~i~~~~~~~~~~~~d~G  117 (145)
                      +.|.|.++|.-.  -.+.|+++ .|+.+      .         ..++...+ .++  .  .|.|.+++.+      |++
T Consensus        11 l~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~e------DtA   84 (107)
T d1sjva_          11 LKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPE------DTA   84 (107)
T ss_dssp             EEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGG------GCS
T ss_pred             cEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcc------cce
Confidence            899999998643  34678764 22211      1         01111122 111  1  4777777665      899


Q ss_pred             EEEEEE
Q psy5697         118 VYRCRA  123 (145)
Q Consensus       118 ~Y~C~A  123 (145)
                      +|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999964

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.49  E-value=0.26  Score=31.97  Aligned_cols=20  Identities=5%  Similarity=0.059  Sum_probs=15.7

Q ss_pred             eEEEeeEeccCCC--EEEEEcc
Q psy5697          61 GLELTRQTRYEPS--QLGWRFS   80 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~~   80 (145)
                      +.|.|.++|...-  .+.|++.
T Consensus        18 l~LsC~~SG~~~~~y~~~WvRQ   39 (116)
T d1fn4b1          18 LSLTCTVSGFSLTSFSVSWVRH   39 (116)
T ss_dssp             ECCEEECCSSCTTSSEEEEEEE
T ss_pred             eEEEEEEeCcccccCccceeeE
Confidence            8999999997654  5778763

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.81  E-value=0.72  Score=29.08  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             eEEEeeEecc--CCCEEEEEcc-CCe-E---eec-c---------cCceEEe---eCC--cEEEcCCCCCCCCCCCCCeE
Q psy5697          61 GLELTRQTRY--EPSQLGWRFS-NNT-V---IAY-V---------KDLRIAL---SNG--SLMFPPFPETGFRPDVHSTV  118 (145)
Q Consensus        61 ~~L~C~a~G~--P~P~i~W~~~-dg~-~---i~~-~---------~~~~~~~---~~G--sL~i~~~~~~~~~~~~d~G~  118 (145)
                      ++|.|..+|.  ..-.+.|.+. .|+ +   +.. .         ++...+.   .++  +|.|.+++.+      |+|.
T Consensus        13 vtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e------Dsa~   86 (110)
T d1u9ka_          13 LTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT------DSGL   86 (110)
T ss_dssp             EEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG------GCEE
T ss_pred             EEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC------CCEE
Confidence            9999998764  5567899864 232 1   111 0         1111121   123  4777776655      8999


Q ss_pred             EEEEEEcCCC
Q psy5697         119 YRCRASNEAG  128 (145)
Q Consensus       119 Y~C~A~N~~G  128 (145)
                      |.|.....-.
T Consensus        87 YyCa~~~~~~   96 (110)
T d1u9ka_          87 YRCVIYHPPN   96 (110)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEeCCCC
Confidence            9998755544

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.24  E-value=0.083  Score=33.61  Aligned_cols=60  Identities=13%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             eEEEeeEeccCC--CEEEEEccCCeEeecccCceEEeeCCcEEE---cCCCCCCCCCCCCCe-EEEEEEEcC
Q psy5697          61 GLELTRQTRYEP--SQLGWRFSNNTVIAYVKDLRIALSNGSLMF---PPFPETGFRPDVHST-VYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~--P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i---~~~~~~~~~~~~d~G-~Y~C~A~N~  126 (145)
                      +.|.|.|.|.=+  -.|+|. .+|..-.... ......+|+..+   ..+..+++    +.| .|.|.+..+
T Consensus        30 ~tL~C~v~gf~P~~i~v~W~-~~~~~~~~~~-~~~~~~dgtys~~S~L~v~~~~W----~~~~~ytC~V~H~   95 (111)
T d1pfca_          30 VSLTCMITGFYPADINVEWD-SSEPSDYKNT-PPVFDTDGSFFLYSRLKVDTDAW----NNGESFTCSVMHE   95 (111)
T ss_dssp             CCEEEEEESCCSSCCEEESS-SCCTTTEEEE-EEECCSSCCCEEEEEECCCSSCC----HHHHCCEEEEEET
T ss_pred             eEEEEEEEeeECCCcEEEEe-eCCCCCcEEc-ccEECCCCcEEEEEEEEECHHHh----CCCCEEEEEEEeC
Confidence            789999999533  479995 4553211000 012234564333   23433322    234 599999876

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.74  E-value=0.28  Score=31.91  Aligned_cols=19  Identities=11%  Similarity=-0.025  Sum_probs=14.8

Q ss_pred             eEEEeeEeccCCC--EEEEEc
Q psy5697          61 GLELTRQTRYEPS--QLGWRF   79 (145)
Q Consensus        61 ~~L~C~a~G~P~P--~i~W~~   79 (145)
                      +.|.|.++|.-.-  .+.|++
T Consensus        18 l~LsC~~SG~s~~~y~~~WvR   38 (117)
T d1b2wh1          18 LKLSCLASGYIFTSSWINWVK   38 (117)
T ss_dssp             EEEEEECCHHHHTTSEECEEE
T ss_pred             EEEEEEECCCCCcCCcccccc
Confidence            8999999987543  567875

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=1.1  Score=26.51  Aligned_cols=46  Identities=11%  Similarity=0.113  Sum_probs=23.4

Q ss_pred             eEEEeeEeccCCCEEEEEccCCeEeecccCceEEeeCCcEEEcCCCCCCCCCCCCCeEEEEEEEcC
Q psy5697          61 GLELTRQTRYEPSQLGWRFSNNTVIAYVKDLRIALSNGSLMFPPFPETGFRPDVHSTVYRCRASNE  126 (145)
Q Consensus        61 ~~L~C~a~G~P~P~i~W~~~dg~~i~~~~~~~~~~~~GsL~i~~~~~~~~~~~~d~G~Y~C~A~N~  126 (145)
                      +.|.|.      -+|+|++ ++..+...       .+.+|-+..... |     ..|.|+|.++..
T Consensus        12 V~L~Cn------~si~W~k-~~~~~~~~-------~~k~lnLG~~~~-D-----PRG~Y~C~~~e~   57 (74)
T d1xiwb_          12 VFVNCN------TSITWVE-GTVGTLLS-------DITRLDLGKRIL-D-----PRGIYRCNGTDI   57 (74)
T ss_dssp             EEEECS------SCEEEEE-ECCCEEEG-------GGTEEEEEEGGG-C-----CEEEEEEC----
T ss_pred             EEEEcc------CeeEEec-CCcccccC-------CccEeecCCccc-C-----CCcceEeCCccc
Confidence            899995      4799975 54322211       112333322211 1     489999987643