Psyllid ID: psy5702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccEccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mttqslgdtVEDVGAEVRSWVInkhhgetplhraARLGYIDAVAYCLEkfshgpapkdnagytplheaashGWLDIARLLLMygadpsdsaiggirplhdaAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLslpsrplhdaaEKGCVEMVRLLLSYgadpllasyaghtplsitsdETTRKLLQYHLADvrgheapkwdfagpascfdkqmvgyeplak
Flexible Loop (DISEMBL)
mttqslgdtvedvGAEVRSWVinkhhgetplhrAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Low Complexity Region (SEG)
MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Disordered region (IsUnstruct)
************VGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMV*******
Disordered Region (DISOPRED)
*TTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Disordered Region (DISEMBL)
**********EDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Disordered Region (DISPRO)
*TTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q6W2J9	1755	BCL-6 corepressor OS=Homo	yes	N/A	0.697	0.093	0.370	1e-26
Q8CGN4	1759	BCL-6 corepressor OS=Mus	yes	N/A	0.697	0.093	0.366	3e-26
A2AQH4	1781	BCL-6 corepressor-like pr	no	N/A	0.646	0.085	0.353	7e-26
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.680	0.085	0.377	4e-20
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.680	0.085	0.377	2e-19
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	N/A	0.676	0.040	0.362	1e-18
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.676	0.040	0.362	4e-18
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.672	0.080	0.378	5e-18
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.672	0.036	0.367	1e-17
Q54HW1	232	26S proteasome non-ATPase	yes	N/A	0.706	0.715	0.320	1e-16

>sp|Q6W2J9|BCOR_HUMAN BCL-6 corepressor OS=Homo sapiens GN=BCOR PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 103/224 (45%), Gaps = 60/224 (26%)

Query: 16   EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
            E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct: 1452 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCALHEACARGWLN 1511

Query: 76   IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
            I R LL YGAD + SA  G RPLH                 DA E   +E+VRLLLSYGA
Sbjct: 1512 IVRHLLEYGADVNCSAQDGTRPLH-----------------DAVENDHLEIVRLLLSYGA 1554

Query: 136  DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETT 195
            DP L                                       A+Y+G T + +T  E  
Sbjct: 1555 DPTL---------------------------------------ATYSGRTIMKMTHSELM 1575

Query: 196  RKLLQYHLADVRGHE----APKWDFAGPASCFDKQMVGYEPLAK 235
             K L  +L D++G      +  WDF G + C      GY+ LA 
Sbjct: 1576 EKFLTDYLNDLQGRNDDDASGTWDFYGSSVCEPDDESGYDVLAN 1619

Transcriptional corepressor. May specifically inhibit gene expression when recruited to promoter regions by sequence specific DNA-binding proteins such as BCL6 and MLLT3. This repression may be mediated at least in part by histone deacetylase activities which can associate with this corepressor. Involved in the repression of TFAP2A; impairs binding of BCL6 and KDM2B to TFAP2A promoter regions. Via repression of TFAP2A acts as a negative regulator of osteo-dentiogenic capacity in adult stem cells; the function implies inhibition of methylation on histone H3 'Lys-4' (H3K4me3) and 'Lys-36' (H3K36me2).
Homo sapiens (taxid: 9606)

>sp|Q8CGN4|BCOR_MOUSE BCL-6 corepressor OS=Mus musculus GN=Bcor PE=1 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 103/224 (45%), Gaps = 60/224 (26%)

Query: 16   EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
            E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct: 1456 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLN 1515

Query: 76   IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
            I R LL YGAD + SA  G RPLH                 DA E   +E+VRLLLSYGA
Sbjct: 1516 IVRHLLEYGADVNCSAQDGTRPLH-----------------DAVENDHLEIVRLLLSYGA 1558

Query: 136  DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETT 195
            DP L                                       A+Y+G T + +T  E  
Sbjct: 1559 DPTL---------------------------------------ATYSGRTIMKMTHSELM 1579

Query: 196  RKLLQYHLADVRGHE----APKWDFAGPASCFDKQMVGYEPLAK 235
             K L  +L D++G      +  W+F G + C      GY+ LA 
Sbjct: 1580 EKFLTDYLNDLQGRSEDDTSGAWEFYGSSVCEPDDESGYDVLAN 1623

Transcriptional corepressor. May specifically inhibit gene expression when recruited to promoter regions by sequence specific DNA-binding proteins such as BCL6 and MLLT3. This repression may be mediated at least in part by histone deacetylase activities which can associate with this corepressor. Involved in the repression of TFAP2A; impairs binding of BCL6 and KDM2B to TFAP2A promoter regions. Via repression of TFAP2A acts as a negative regulator of osteo-dentiogenic capacity in adult stem cells; the function implies inhibition of methylation on histone H3 'Lys-4' (H3K4me3) and 'Lys-36' (H3K36me2).

Mus musculus (taxid: 10090)

>sp|A2AQH4|BCORL_MOUSE BCL-6 corepressor-like protein 1 OS=Mus musculus GN=Bcorl1 PE=2 SV=1

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 102/212 (48%), Gaps = 60/212 (28%)

Query: 9    TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
            T   +  E R  ++NK+ GET L RAARLGY D V YCL+K S     +DNAGYT LHEA
Sbjct: 1476 TARQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEA 1535

Query: 69   ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR 128
             S GW DI  +LL +GA+ + S+  G RP+HDA             ++D      +E + 
Sbjct: 1536 CSRGWTDILNILLQHGANVNCSSQDGTRPVHDAV------------VNDN-----LETIW 1578

Query: 129  LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
            LLLSYGADP L                                       A+Y+G T + 
Sbjct: 1579 LLLSYGADPTL---------------------------------------ATYSGQTAMK 1599

Query: 189  ITSDETTRKLLQYHLADVRGHEA--PK--WDF 216
            + S +  ++ L  HL+D++G     P+  WDF
Sbjct: 1600 LASSDNMKRFLSDHLSDLQGRAEGDPRASWDF 1631

Transcriptional corepressor. May specifically inhibit gene expression when recruited to promoter regions by sequence specific DNA-binding proteins such as BCL6. This repression may be mediated at least in part by histone deacetylase activities which can associate with this corepressor.

Mus musculus (taxid: 10090)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 23/183 (12%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G TPLH AAR G++D     LEK +   A     G+TPLH AA +G + +A LLL + A 
Sbjct: 499 GHTPLHTAAREGHVDTALALLEKEA-SQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAH 557

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
           P+ +   G+ PLH A     +++V+LL                PLH AA++  +E+ R L
Sbjct: 558 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSL 617

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
           L YG      S           PLH AA++G  EMV LLLS  A+  L + +G TPL + 
Sbjct: 618 LQYGGSANAESVQGVT------PLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLV 671

Query: 191 SDE 193
           S E
Sbjct: 672 SQE 674

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 23/183 (12%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G TPLH AAR G+++ V   LEK +   A     G+TPLH AA +G + +A LLL   A 
Sbjct: 503 GHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 561

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
           P+ +   G+ PLH A     +++V+LL                PLH AA++  VE+ R L
Sbjct: 562 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 621

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
           L YG      S           PLH AA++G  EMV LLLS  A+  L + +G TPL + 
Sbjct: 622 LQYGGSANAESVQGVT------PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 675

Query: 191 SDE 193
           + E
Sbjct: 676 AQE 678

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 23/182 (12%)

Query: 28  ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
           +TPLH A+RLG  + V   L+  +H  A   N GYTPLH +A  G +D+A +LL  GA  
Sbjct: 498 QTPLHIASRLGKTEIVQLLLQHMAHPDAATTN-GYTPLHISAREGQVDVASVLLEAGAAH 556

Query: 88  SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLL 131
           S +   G  PLH AA+ G +++ +LL                PLH AA     ++  LLL
Sbjct: 557 SLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLL 616

Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
             GA P   +   Y       PLH AA+K  +++   LL+YGA+  + +  G TPL + S
Sbjct: 617 EKGASPHATAKNGY------TPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHLAS 670

Query: 192 DE 193
            E
Sbjct: 671 QE 672

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 23/182 (12%)

Query: 28  ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP 87
           +TPLH A+RLG  + V   L+  +H  A   N GYTPLH +A  G +D+A +LL  GA  
Sbjct: 498 QTPLHIASRLGKTEIVQLLLQHMAHPDAATTN-GYTPLHISAREGQVDVASVLLEAGAAH 556

Query: 88  SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLL 131
           S +   G  PLH AA+ G +++ +LL                PLH AA     ++  LLL
Sbjct: 557 SLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLL 616

Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
             GA P   +   Y       PLH AA+K  +++   LL+YGA+    +  G TPL + S
Sbjct: 617 EKGASPHATAKNGY------TPLHIAAKKNQMQIASTLLNYGAETNTVTKQGVTPLHLAS 670

Query: 192 DE 193
            E
Sbjct: 671 QE 672

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 98/185 (52%), Gaps = 27/185 (14%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPA--PKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           G TPLH AAR G+ D  A+ L+   HG +       G+TPLH AA +G L++A LLL   
Sbjct: 515 GYTPLHLAAREGHEDVAAFLLD---HGASLSITTKKGFTPLHVAAKYGKLEVASLLLQKS 571

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
           A P  +   G+ PLH AA     ++  LL                PLH AA+K  +++  
Sbjct: 572 ASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIAT 631

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
            LL YGAD    + AV    + S  +H AA++G V+MV LLLS  A+  L++ +G TPL 
Sbjct: 632 SLLEYGAD----ANAVTRQGIAS--VHLAAQEGHVDMVSLLLSRNANVNLSNKSGLTPLH 685

Query: 189 ITSDE 193
           + + E
Sbjct: 686 LAAQE 690

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 27/185 (14%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
           G TPLH +AR G+ D  A+ L+   HG +       G+TPLH AA +G L++A LLL   
Sbjct: 532 GYTPLHLSAREGHEDVAAFLLD---HGASLSITTKKGFTPLHVAAKYGKLEVANLLLQKS 588

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
           A P  +   G+ PLH AA     ++  LL                PLH AA+K  +++  
Sbjct: 589 ASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIAT 648

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
            LL YGAD    + AV    + S  +H AA++G V+MV LLL   A+  L++ +G TPL 
Sbjct: 649 TLLEYGAD----ANAVTRQGIAS--VHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLH 702

Query: 189 ITSDE 193
           + + E
Sbjct: 703 LAAQE 707

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 21/187 (11%)

Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           TPLH AA  G I    Y ++     P   D+ G+TPL  A S G   + +LLL +GADP+
Sbjct: 48  TPLHWAAAKGQISVAQYLMDNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGADPN 107

Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSY 133
                   PLH A+ KG  ++V LL               P+H A+  G V  V  LL  
Sbjct: 108 TVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPIHRASSNGSVATVERLLKG 167

Query: 134 GADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
            A+    +           PLH AAE    ++V  LL +GAD  + +    TP+ ++S +
Sbjct: 168 EANINSTNNE------GDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPIDMSSSQ 221

Query: 194 TTRKLLQ 200
           T + L++
Sbjct: 222 TIKYLIK 228

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
242011984	2512	ankyrin repeat-containing protein, putat	0.761	0.071	0.459	1e-52
189241741	1531	PREDICTED: similar to CG14073 CG14073-PA	0.719	0.110	0.48	4e-51
270000788	1485	hypothetical protein TcasGA2_TC011033 [T	0.719	0.113	0.48	5e-51
332025038	1257	BCL-6 corepressor [Acromyrmex echinatior	0.723	0.135	0.464	4e-48
350416650	2595	PREDICTED: hypothetical protein LOC10074	0.744	0.067	0.450	1e-45
340722455	2592	PREDICTED: hypothetical protein LOC10064	0.744	0.067	0.450	2e-45
328781901	2604	PREDICTED: hypothetical protein LOC40837	0.744	0.067	0.450	4e-45
383849113	2519	PREDICTED: uncharacterized protein LOC10	0.744	0.069	0.445	4e-45
322786968	2199	hypothetical protein SINV_03118 [Solenop	0.748	0.080	0.448	7e-45
307175596	2552	BCL-6 corepressor [Camponotus floridanus	0.723	0.066	0.460	7e-45

>gi|242011984|ref|XP_002426723.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis] gi|212510894|gb|EEB13985.1| ankyrin repeat-containing protein, putative [Pediculus humanus corporis]

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/235 (45%), Positives = 139/235 (59%), Gaps = 56/235 (23%)

Query: 1    MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNA 60
            MT + + ++VED+  E+++WVINK  GET LHRAARLGY D  AYCLEK    P+P+DNA
Sbjct: 2162 MTGKPVSESVEDIQNEIKNWVINKGLGETVLHRAARLGYTDIAAYCLEKMDCSPSPRDNA 2221

Query: 61   GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
            GYTPLHEA S G L+IA+LLLMYGA  S+SA GG+RPLH+AA                 E
Sbjct: 2222 GYTPLHEACSRGHLEIAKLLLMYGASVSESAKGGVRPLHEAA-----------------E 2264

Query: 121  KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
             G  E++RLLLS+GADPL                                       L +
Sbjct: 2265 NGYTELIRLLLSFGADPL---------------------------------------LET 2285

Query: 181  YAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK 235
            Y GHT LS+ +D+    L+Q+HLADV+G+ AP W F GP+S FD  + GY+PL++
Sbjct: 2286 YTGHTALSLVTDDEASSLIQHHLADVQGNVAPVWTFQGPSSLFDPVVNGYDPLSE 2340

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241741|ref|XP_967399.2| PREDICTED: similar to CG14073 CG14073-PA [Tribolium castaneum]

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 108/225 (48%), Positives = 134/225 (59%), Gaps = 56/225 (24%)

Query: 9    TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
            +V+D+  E++ WV+NK  GET LHRAARLGY D  AYCLEK  + P+PKDNAGYTPLHEA
Sbjct: 1231 SVQDIQKEIKGWVLNKGIGETILHRAARLGYTDITAYCLEKMEYSPSPKDNAGYTPLHEA 1290

Query: 69   ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR 128
            ++ G LDIA++LL+YGA+ S+SA GGIRPLH+A E                  G VE+VR
Sbjct: 1291 STKGHLDIAKMLLLYGANVSESARGGIRPLHEAVE-----------------NGYVEIVR 1333

Query: 129  LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
            LLLSYGADP L                                       A+Y+G TPL+
Sbjct: 1334 LLLSYGADPKL---------------------------------------ATYSGMTPLA 1354

Query: 189  ITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            + SD+TT KLLQ H+ DV G     WDFAGPASCFD +  G++ L
Sbjct: 1355 LASDDTTTKLLQSHINDVEGEPGAPWDFAGPASCFDPKESGFDVL 1399

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000788|gb|EEZ97235.1| hypothetical protein TcasGA2_TC011033 [Tribolium castaneum]

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/225 (48%), Positives = 134/225 (59%), Gaps = 56/225 (24%)

Query: 9    TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
            +V+D+  E++ WV+NK  GET LHRAARLGY D  AYCLEK  + P+PKDNAGYTPLHEA
Sbjct: 1185 SVQDIQKEIKGWVLNKGIGETILHRAARLGYTDITAYCLEKMEYSPSPKDNAGYTPLHEA 1244

Query: 69   ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR 128
            ++ G LDIA++LL+YGA+ S+SA GGIRPLH+A E                  G VE+VR
Sbjct: 1245 STKGHLDIAKMLLLYGANVSESARGGIRPLHEAVE-----------------NGYVEIVR 1287

Query: 129  LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
            LLLSYGADP L                                       A+Y+G TPL+
Sbjct: 1288 LLLSYGADPKL---------------------------------------ATYSGMTPLA 1308

Query: 189  ITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            + SD+TT KLLQ H+ DV G     WDFAGPASCFD +  G++ L
Sbjct: 1309 LASDDTTTKLLQSHINDVEGEPGAPWDFAGPASCFDPKESGFDVL 1353

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025038|gb|EGI65225.1| BCL-6 corepressor [Acromyrmex echinatior]

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/226 (46%), Positives = 126/226 (55%), Gaps = 56/226 (24%)

Query: 8    DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHE 67
            + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK +  P+PKDNAGYTPLHE
Sbjct: 957  ECVADIQSEIRTWVIKKGVGETILHRAARLGYTDVTAYCLEKLNSAPSPKDNAGYTPLHE 1016

Query: 68   AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV 127
            A S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E G  E+V
Sbjct: 1017 ACSKGHLEIAKLLLAYGANVSESANGGIRPLHEAA-----------------ENGATELV 1059

Query: 128  RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
            RLLLSYGADPLL                                       A+Y+G TPL
Sbjct: 1060 RLLLSYGADPLL---------------------------------------ATYSGQTPL 1080

Query: 188  SITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
             +  D     +L+ HLAD++G     W FAGP S FD +  GY PL
Sbjct: 1081 MLAVDTDANAILEQHLADIQGRTTVPWSFAGPCSIFDPEETGYNPL 1126

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416650|ref|XP_003491036.1| PREDICTED: hypothetical protein LOC100747252 [Bombus impatiens]

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 130/231 (56%), Gaps = 56/231 (24%)

Query: 3    TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
            T+   + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK ++ P+PKDNAGY
Sbjct: 2291 TRPSPECVADIQSEIRTWVIKKGVGETMLHRAARLGYTDVTAYCLEKLNNAPSPKDNAGY 2350

Query: 63   TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
            TPLHEA S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E G
Sbjct: 2351 TPLHEACSKGHLEIAKLLLAYGANASESANGGIRPLHEAA-----------------ENG 2393

Query: 123  CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
              E+VRLLLSYGADPLL                                       A+Y+
Sbjct: 2394 ATELVRLLLSYGADPLL---------------------------------------ATYS 2414

Query: 183  GHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            G TPL + +D     +L+ HL D++G  +  W F GP+S FD +  GY PL
Sbjct: 2415 GQTPLMLAADTDAYSILEQHLDDIQGRTSTAWSFGGPSSIFDPEETGYNPL 2465

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722455|ref|XP_003399621.1| PREDICTED: hypothetical protein LOC100643741 [Bombus terrestris]

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 130/231 (56%), Gaps = 56/231 (24%)

Query: 3    TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
            T+   + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK ++ P+PKDNAGY
Sbjct: 2288 TRPSPECVADIQSEIRTWVIKKGVGETMLHRAARLGYTDVTAYCLEKLNNAPSPKDNAGY 2347

Query: 63   TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
            TPLHEA S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E G
Sbjct: 2348 TPLHEACSKGHLEIAKLLLAYGANASESANGGIRPLHEAA-----------------ENG 2390

Query: 123  CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
              E+VRLLLSYGADPLL                                       A+Y+
Sbjct: 2391 ATELVRLLLSYGADPLL---------------------------------------ATYS 2411

Query: 183  GHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            G TPL + +D     +L+ HL D++G  +  W F GP+S FD +  GY PL
Sbjct: 2412 GQTPLMLAADTDAYSILEQHLDDIQGRTSTAWSFGGPSSIFDPEETGYNPL 2462

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781901|ref|XP_391923.4| PREDICTED: hypothetical protein LOC408374 [Apis mellifera]

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 104/231 (45%), Positives = 130/231 (56%), Gaps = 56/231 (24%)

Query: 3    TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
            T+   + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK ++ P+PKDNAGY
Sbjct: 2300 TRPSPECVADIQSEIRTWVIKKGVGETLLHRAARLGYTDVTAYCLEKLNNAPSPKDNAGY 2359

Query: 63   TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
            TPLHEA S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E G
Sbjct: 2360 TPLHEACSKGHLEIAKLLLAYGANASESANGGIRPLHEAA-----------------ENG 2402

Query: 123  CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
              E+VRLLLSYGADPLL                                       A+Y+
Sbjct: 2403 ATELVRLLLSYGADPLL---------------------------------------ATYS 2423

Query: 183  GHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            G TPL + +D     +L+ HL D++G  +  W F GP+S FD +  GY PL
Sbjct: 2424 GQTPLMLAADTDAYSILEQHLDDIQGRASTTWSFGGPSSIFDLEETGYNPL 2474

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849113|ref|XP_003700191.1| PREDICTED: uncharacterized protein LOC100877383 [Megachile rotundata]

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 130/231 (56%), Gaps = 56/231 (24%)

Query: 3    TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
            T+   ++V D+  E+R+WVI K  GET LHRAARLGY D  AYCLEK ++ P+PKDNAGY
Sbjct: 2215 TRPSPESVADIQTEIRTWVIKKGVGETMLHRAARLGYTDVTAYCLEKLNNAPSPKDNAGY 2274

Query: 63   TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
            TPLHEA S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E G
Sbjct: 2275 TPLHEACSRGHLEIAKLLLAYGANASESANGGIRPLHEAA-----------------ENG 2317

Query: 123  CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
              E+VRLLLSYGADPLL                                       A+Y+
Sbjct: 2318 ATELVRLLLSYGADPLL---------------------------------------ATYS 2338

Query: 183  GHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            G TPL + +D     +L+ HL D++G  +  W F GP+S FD +  GY P+
Sbjct: 2339 GQTPLMLAADTDAYSILEQHLDDIQGRASTPWSFGGPSSIFDPEDTGYNPV 2389

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786968|gb|EFZ13192.1| hypothetical protein SINV_03118 [Solenopsis invicta]

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 104/232 (44%), Positives = 127/232 (54%), Gaps = 56/232 (24%)

Query: 2    TTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAG 61
            T +   + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK +  P+PKDNAG
Sbjct: 1894 TNKPSPECVADIQSEIRTWVIKKGVGETILHRAARLGYTDVTAYCLEKLNSAPSPKDNAG 1953

Query: 62   YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEK 121
            YTPLHEA S G L+IA+LLL YGA+ S+SA GGIRPLH+AA                 E 
Sbjct: 1954 YTPLHEACSKGHLEIAKLLLAYGANVSESANGGIRPLHEAA-----------------EN 1996

Query: 122  GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
            G  E+VRLLLSYGADPLL                                       A+Y
Sbjct: 1997 GATELVRLLLSYGADPLL---------------------------------------ATY 2017

Query: 182  AGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
            +G TPL +  D     +L+ HLAD++G     W FAGP+S  D +  GY P 
Sbjct: 2018 SGQTPLMLAVDTEANSILEQHLADIQGRTTVPWSFAGPSSILDPEETGYNPF 2069

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175596|gb|EFN65506.1| BCL-6 corepressor [Camponotus floridanus]

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 104/226 (46%), Positives = 125/226 (55%), Gaps = 56/226 (24%)

Query: 8    DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHE 67
            + V D+ +E+R+WVI K  GET LHRAARLGY D  AYCLEK +  P+PKDNAGYTPLHE
Sbjct: 2252 ECVADIQSEIRTWVIKKGVGETILHRAARLGYTDVTAYCLEKLNSTPSPKDNAGYTPLHE 2311

Query: 68   AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV 127
            A S G L+IA+LLL YGA+ S+SA GGIRPLH+A                  E G  E+V
Sbjct: 2312 ACSKGHLEIAKLLLAYGANVSESANGGIRPLHEA-----------------VENGATELV 2354

Query: 128  RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
            RLLLSYGADPLL                                       A+Y+G TPL
Sbjct: 2355 RLLLSYGADPLL---------------------------------------ATYSGQTPL 2375

Query: 188  SITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL 233
                D  T+ +L+ HL D++G     W F GPAS FD +  GY PL
Sbjct: 2376 MWAVDTETKSILEQHLDDIQGRVTVPWSFTGPASIFDPEETGYNPL 2421

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
FB|FBgn0036814	2133	CG14073 [Drosophila melanogast	0.446	0.049	0.561	3.3e-26
UNIPROTKB|H7BZ37	332	BCOR "BCL-6 corepressor" [Homo	0.608	0.430	0.437	1.3e-22
UNIPROTKB|Q6W2J9	1755	BCOR "BCL-6 corepressor" [Homo	0.608	0.081	0.437	5.3e-21
UNIPROTKB|D4A1S3	1739	Bcor "Protein Bcor" [Rattus no	0.608	0.082	0.430	6.7e-21
RGD|1562735	1757	Bcor "BCL6 co-repressor" [Ratt	0.608	0.081	0.430	6.8e-21
MGI|MGI:1918708	1759	Bcor "BCL6 interacting corepre	0.608	0.081	0.430	8.7e-21
UNIPROTKB|G3X8E4	1766	BCOR "Uncharacterized protein"	0.608	0.080	0.430	8.8e-21
UNIPROTKB|F1RXQ4	1774	BCOR "Uncharacterized protein"	0.417	0.055	0.561	1.1e-20
MGI|MGI:2443910	1781	Bcorl1 "BCL6 co-repressor-like	0.446	0.058	0.495	1.8e-20
UNIPROTKB|F1NZP1	1368	BCORL1 "Uncharacterized protei	0.446	0.076	0.495	2.2e-20

FB|FBgn0036814 CG14073 [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 59/105 (56%), Positives = 76/105 (72%)

Query:     9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
             T  DV  E++ WV+NK  G++ +H+AAR G ID V YCL++ +  P  KDNAGYTPLHEA
Sbjct:  1679 TEMDVCREIQKWVLNKGVGQSTMHKAARQGLIDVVVYCLDRMNMNPDQKDNAGYTPLHEA 1738

Query:    69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
              + GWL+IAR+LL YGA+ S++A  GIRPLH A E    E+VRLL
Sbjct:  1739 CTQGWLEIARILLQYGANHSEAAQSGIRPLHGAIENDHEEVVRLL 1783

GO:0003674 "molecular_function" evidence=ND

GO:0005876 "spindle microtubule" evidence=IDA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

UNIPROTKB|H7BZ37 BCOR "BCL-6 corepressor" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 63/144 (43%), Positives = 81/144 (56%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:   125 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCALHEACARGWLN 184

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:   185 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 244

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   DA+
Sbjct:   245 SELMEKFLTDYLNDLQGRNDDDAS 268

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6W2J9 BCOR "BCL-6 corepressor" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 63/144 (43%), Positives = 81/144 (56%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1452 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCALHEACARGWLN 1511

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:  1512 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 1571

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   DA+
Sbjct:  1572 SELMEKFLTDYLNDLQGRNDDDAS 1595

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0065001 "specification of axis polarity" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0060021 "palate development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0003714 "transcription corepressor activity" evidence=IMP;IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042476 "odontogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IMP

GO:0070171 "negative regulation of tooth mineralization" evidence=IMP

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IMP

GO:0030502 "negative regulation of bone mineralization" evidence=IMP

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0035518 "histone H2A monoubiquitination" evidence=IDA

UNIPROTKB|D4A1S3 Bcor "Protein Bcor" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 6.7e-21, P = 6.7e-21
 Identities = 62/144 (43%), Positives = 80/144 (55%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1436 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLN 1495

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:  1496 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 1555

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   D +
Sbjct:  1556 SELMEKFLTDYLNDLQGRSEEDTS 1579

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0030502 "negative regulation of bone mineralization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0042476 "odontogenesis" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0065001 "specification of axis polarity" evidence=IEA

GO:0070171 "negative regulation of tooth mineralization" evidence=IEA

RGD|1562735 Bcor "BCL6 co-repressor" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 62/144 (43%), Positives = 80/144 (55%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1454 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLN 1513

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:  1514 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 1573

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   D +
Sbjct:  1574 SELMEKFLTDYLNDLQGRSEEDTS 1597

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0030502 "negative regulation of bone mineralization" evidence=IEA;ISO

GO:0031072 "heat shock protein binding" evidence=IEA;ISO

GO:0031519 "PcG protein complex" evidence=IEA;ISO

GO:0035518 "histone H2A monoubiquitination" evidence=IEA;ISO

GO:0042476 "odontogenesis" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA;ISO

GO:0060021 "palate development" evidence=IEA;ISO

GO:0065001 "specification of axis polarity" evidence=IEA;ISO

GO:0070171 "negative regulation of tooth mineralization" evidence=IEA;ISO

MGI|MGI:1918708 Bcor "BCL6 interacting corepressor" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 62/144 (43%), Positives = 80/144 (55%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1456 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNHRDNAGYCALHEACARGWLN 1515

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:  1516 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 1575

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   D +
Sbjct:  1576 SELMEKFLTDYLNDLQGRSEDDTS 1599

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007507 "heart development" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0030502 "negative regulation of bone mineralization" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0035518 "histone H2A monoubiquitination" evidence=ISO

GO:0042476 "odontogenesis" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=ISO

GO:0060021 "palate development" evidence=ISO

GO:0065001 "specification of axis polarity" evidence=ISO

GO:0070171 "negative regulation of tooth mineralization" evidence=ISO

UNIPROTKB|G3X8E4 BCOR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 8.8e-21, P = 8.8e-21
 Identities = 62/144 (43%), Positives = 81/144 (56%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1455 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCALHEACARGWLN 1514

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA 135
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL  + A         R ++    
Sbjct:  1515 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLATYSGRTIMKMTH 1574

Query:   136 DPLLASYAVYFLS-LPSRPLHDAA 158
               L+  +   +L+ L  R   D++
Sbjct:  1575 SELMEKFLTDYLNDLQGRDDDDSS 1598

GO:0070171 "negative regulation of tooth mineralization" evidence=IEA

GO:0065001 "specification of axis polarity" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042476 "odontogenesis" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030502 "negative regulation of bone mineralization" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1RXQ4 BCOR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 55/98 (56%), Positives = 65/98 (66%)

Query:    16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD 75
             E R  ++NK+ GET L RAARLGY + V YCLE        +DNAGY  LHEA + GWL+
Sbjct:  1471 EARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCALHEACARGWLN 1530

Query:    76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
             I R LL YGAD + SA  G RPLHDA E   +E+VRLL
Sbjct:  1531 IVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLL 1568

GO:0070171 "negative regulation of tooth mineralization" evidence=IEA

GO:0065001 "specification of axis polarity" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0051572 "negative regulation of histone H3-K4 methylation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042476 "odontogenesis" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030502 "negative regulation of bone mineralization" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000415 "negative regulation of histone H3-K36 methylation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2443910 Bcorl1 "BCL6 co-repressor-like 1" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 52/105 (49%), Positives = 66/105 (62%)

Query:     9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
             T   +  E R  ++NK+ GET L RAARLGY D V YCL+K S     +DNAGYT LHEA
Sbjct:  1476 TARQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEA 1535

Query:    69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
              S GW DI  +LL +GA+ + S+  G RP+HDA     +E + LL
Sbjct:  1536 CSRGWTDILNILLQHGANVNCSSQDGTRPVHDAVVNDNLETIWLL 1580

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016568 "chromatin modification" evidence=IEA

UNIPROTKB|F1NZP1 BCORL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 52/105 (49%), Positives = 68/105 (64%)

Query:     9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
             T + +  E R  ++NK+ GET L RAARLGY D V YCL+K S     +DNAGYT LHEA
Sbjct:  1064 TAQHIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKKSSDVNHRDNAGYTALHEA 1123

Query:    69 ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
              + GW+DI  +LL +GA+ + SA  G RP+HDA     +E + LL
Sbjct:  1124 CARGWIDILHILLEHGANVNCSAQDGTRPVHDAVANDNLETMWLL 1168

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54HW1	PSD10_DICDI	No assigned EC number	0.3208	0.7063	0.7155	yes	N/A
Q10311	YD58_SCHPO	No assigned EC number	0.3152	0.6723	0.6752	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	235
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	5e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.5 bits (238), Expect = 3e-25
 Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 17/122 (13%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
            G TPLH AA  G+++ V   LE  +     KDN G TPLH AA +G L+I +LLL  GA
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 86  DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
           D +     G  PLH AA  G +++V+LL                PLH AA+ G +E+V+L
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124

Query: 130 LL 131
           LL
Sbjct: 125 LL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 22/130 (16%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
           +D  G TPLH AAS+G L++ +LLL  GAD +     G  PLH AA+ G +E+V+LL   
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
                        PLH AA  G +++V+LLL +GAD                PLH AA+ 
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT------PLHLAAKN 116

Query: 161 GCVEMVRLLL 170
           G +E+V+LLL
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.7 bits (202), Expect = 6e-20
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           + G TPLH AA+ G+++ V   LEK +     +D  G TPLH AA +G LD+ +LLL +G
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           AD +     G  PLH AA+ G +E+V+LL
Sbjct: 97  ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.1 bits (188), Expect = 3e-18
 Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 25/114 (21%)

Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
           LH AA +G L++ +LLL  GAD +                          LH AA  G +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD-------------------TDTALHLAARNGNL 41

Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
           E+V+LLL +GAD                 LH AA  G +E+V+LLL +GAD  L
Sbjct: 42  EIVKLLLEHGADVNAKDKDGN------TALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.7 bits (179), Expect = 8e-17
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           LH AA+ G ++ V   LE    G         T LH AA +G L+I +LLL +GAD +  
Sbjct: 1   LHLAAKNGNLELVKLLLE---KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 91  AIGGIRPLHDAAEKGCVEMVRLL 113
              G   LH AA  G +E+V+LL
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 56/216 (25%), Positives = 81/216 (37%), Gaps = 39/216 (18%)

Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW-----LDIARLLLMY 83
            PL+ A     ID V   L+              TPLH  ++  +      +I +LLL Y
Sbjct: 37  LPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 84  GADPSDSAIGGIRPLHDAAEK--GCVEMVRLL----------------PLHDAAEKGCV- 124
           GA+ +     GI PL  A  K      +V  L                 LH   E   + 
Sbjct: 96  GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKID 155

Query: 125 -EMVRLLLSYGADPLLASYAVYFLSLPSR----------PLHDAAEKGCVEMVRLLLSYG 173
            ++++LL+  G D    +   Y LS              PLH A      E V+ LL  G
Sbjct: 156 LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215

Query: 174 ADPLLASYAGHTPLSI---TSDETTRKLLQYHLADV 206
           A+P L +  G TPL I    +++   KLL  +   +
Sbjct: 216 ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 8/75 (10%)

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
           LH AA+ G +E+V+LLL  GAD  L              LH AA  G +E+V+LLL +GA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--------DTALHLAARNGNLEIVKLLLEHGA 52

Query: 175 DPLLASYAGHTPLSI 189
           D       G+T L +
Sbjct: 53  DVNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 70.4 bits (172), Expect = 4e-14
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 27/167 (16%)

Query: 28  ETPLHRAARLGYIDAVAYCLE--KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
           E+ LH A   G + AV   L+  KF+     KD  G TPLH A     LDI +LL+  GA
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIMKLLIARGA 126

Query: 86  DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
           DP         PLH A   G ++ + LL                PL  A  KG + + ++
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186

Query: 130 LLSYGADPLLASYAVYFLSLPS-RPLHDAAEKGCVEMVRLLLSYGAD 175
           LL  GA+        YF        L  A E   +++VRL +  GAD
Sbjct: 187 LLDSGANI------DYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           PLH AA  G +E+V+LLL  GAD                PLH AA+ G +E+V+LLL  G
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRT------PLHLAAKNGHLEIVKLLLEKG 63

Query: 174 ADPLLASYAGHTPL 187
           AD       G+TPL
Sbjct: 64  ADVNARDKDGNTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.8 bits (162), Expect = 3e-13
 Identities = 55/166 (33%), Positives = 72/166 (43%), Gaps = 19/166 (11%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
           +D  G  PLH AAS G   I +LLL  GAD +     G  PLH AA            L+
Sbjct: 69  RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA------------LN 116

Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGA 174
               +G +E+ +LLL  GAD       V  L       PLH AA  G  ++V LLL  GA
Sbjct: 117 GNPPEGNIEVAKLLLEAGAD-----LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPA 220
           DP   +  G T L   +     +L++  L         K++  G A
Sbjct: 172 DPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVA 217

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 3e-12
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIR-PLHDAAEKGCVEMVRLL------ 113
           G +P+  A      +  +LL+ +GA P D     I   LHDA E+G V+ V  L      
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 114 -----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC 162
                      PLH A     +++++LL++ GADP + +      +    PLH A   G 
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGD 147

Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSI 189
           ++ + LL+ + A   +    G TPL I
Sbjct: 148 IKGIELLIDHKACLDIEDCCGCTPLII 174

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL 79
          +N    +T LH AAR G ++ V   LE   HG     KD  G T LH AA +G L+I +L
Sbjct: 23 VNLGDTDTALHLAARNGNLEIVKLLLE---HGADVNAKDKDGNTALHLAARNGNLEIVKL 79

Query: 80 LLMYGADPS 88
          LL +GAD +
Sbjct: 80 LLEHGADIN 88

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.9 bits (152), Expect = 5e-12
 Identities = 52/156 (33%), Positives = 66/156 (42%), Gaps = 26/156 (16%)

Query: 23  NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG-----WLDIA 77
               G  PLH AA  G    V   L   +     KD  G TPLH AA +G      +++A
Sbjct: 69  RDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVA 127

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
           +LLL  GAD   +       L D             PLH AA  G  ++V LLL  GADP
Sbjct: 128 KLLLEAGADLDVNN------LRDEDGN--------TPLHWAALNGDADIVELLLEAGADP 173

Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
              +            L  AA+ G +E+V+LLL  G
Sbjct: 174 NSRNSYGVT------ALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 33/179 (18%)

Query: 50  FSHGPAPK---DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC 106
            S+G        + G T LH A  +    +  LLL YGA+ +        PLH A +   
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213

Query: 107 VEMVRLL----------------PLHDAAEKGCV--EMVRLLLSYGADPLLASYAVYFLS 148
             +V +L                PLH +    C   ++++LLL +G D    SY +   +
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPLHISVGY-CKDYDILKLLLEHGVDVNAKSYILGLTA 272

Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT----SDETTRKLLQYHL 203
           L S  +           ++LLL YGAD    +    TPLS            ++L  ++
Sbjct: 273 LHS-SIKSE------RKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI 324

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
           L +A   G LDIAR LL  G +P+     GI P+  A +    E ++LL           
Sbjct: 6   LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY 65

Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAV-YFLSLPSRPLHDAAEKGCVEMVR 167
                 LHDA E+G V+ V  LL       L  +A   F      PLH A     +++++
Sbjct: 66  PDIESELHDAVEEGDVKAVEELL------DLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 168 LLLSYGADPLLASYAGHTPLSI---TSDETTRKLLQYHLA 204
           LL++ GADP + +    +PL +     D    +LL  H A
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
                G TPLH AAR G +D V   L+  +     +D  G TPLH AA +G L++ +LLL
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 45  YCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK 104
           Y + +              PL+ A     +D+ ++LL  GAD + S      PLH     
Sbjct: 20  YIIME-DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH----- 73

Query: 105 GCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK--GC 162
                   L           E+V+LLL YGA+    +     ++    PL  A  K    
Sbjct: 74  -------YLSNIKYNLTDVKEIVKLLLEYGANV--NAPDNNGIT----PLLYAISKKSNS 120

Query: 163 VEMVRLLLSYGADPLLASYAGHTPL-----SITSDETTRKLLQYHLADV 206
             +V  LL  GA+  + +  G   L     S   D    KLL     D+
Sbjct: 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
          T LH+AA  G ++ V Y LEK        D  G T LH AA +G L++ +LLL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 27  GETPLHRAARLGYID------------------AVAYCLEKFSHGPAPKDNAGYTPLHEA 68
           GE  LH       ID                   V Y L         KD  G+TPLH A
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINI-KDVYGFTPLHYA 199

Query: 69  ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR 128
             +   +  + LL  GA+P+     G  PLH A      E+ +LL  +  + K  +E + 
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLL 259

Query: 129 LL 130
             
Sbjct: 260 YF 261

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
            R+LL+ GADP    Y          PLH A   G V++VR+LL +GADP L    G TP
Sbjct: 98  ARILLTGGADPNCRDYD------GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151

Query: 187 LSITSDETTRKLLQ 200
           L +  +   R+++Q
Sbjct: 152 LELAEENGFREVVQ 165

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           G T LH+AA  G L++ + LL  G D + +   G   LH AAE G +E+++LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 19/138 (13%)

Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           GA+V    I   +G  P+H A +  + D +   LEK ++    KDN G +PLH AA +G 
Sbjct: 147 GADVN---IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV-KDNNGESPLHNAAEYGD 202

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAA--EKGCVEMV------------RLLPLHDAA 119
               +LL+ +G    +    G  PLH+A    +  +E++               PLH A 
Sbjct: 203 YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAI 262

Query: 120 EKGC-VEMVRLLLSYGAD 136
              C ++++ +LL + AD
Sbjct: 263 NPPCDIDIIDILLYHKAD 280

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 42/175 (24%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
           KD    T LH A   G L+  ++L  YGAD +     G  P+H A +    ++++LL   
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGAD----------PL----LASYAVYF 146
                        PLH+AAE G    ++LL+ +G            PL    + + +   
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE 239

Query: 147 LSLPSR-----------PLHDAAEKGC-VEMVRLLLSYGADPLLASYAGHTPLSI 189
           L + +            PLH A    C ++++ +LL + AD  +    G  P+  
Sbjct: 240 LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 58/238 (24%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH 71
           D G  V S    K+   TPLH A++   +  +   L +       K+  G TPL+  A +
Sbjct: 261 DAGFSVNSIDDCKN---TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN 317

Query: 72  GW-LDIARLLLMYGADPSDSAIGGIRPLHDAA--EKGCVEMVRLL--------------- 113
           G+  +  R L+M GAD + +    I PLH A+  ++    ++ LL               
Sbjct: 318 GYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKT 377

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLAS--------YAVY----FLSLP----------- 150
           P+H AA +  V ++  LL YGAD    S        +A+     ++S+            
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437

Query: 151 -----SRPLHDAAEKGC-VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYH 202
                S PLH A +K C ++++ +LL  GAD    +     PL I         L+YH
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA--------LEYH 487

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 61 GYTPLHEAASHGWLDIARLLLMYGADP 87
          G TPLH AA +G L++ +LLL  GAD 
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 58/210 (27%), Positives = 76/210 (36%), Gaps = 45/210 (21%)

Query: 27  GETPLHRAARLGYIDAVAYCL--EKFSH---GPAPKDNA--------GYTPLHEAASHGW 73
           G+T LH A  L Y+DAV   L     +    GP    N         G T LH AA    
Sbjct: 82  GDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQN 140

Query: 74  LDIARLLLMYGADPSDSAIGG---IRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL 130
            +I +LLL  GA     A G         D+   G        PL+ AA  G   +V LL
Sbjct: 141 YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG------ESPLNAAACLGSPSIVALL 194

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAA---------EKGCVEMVRLLLSYGADP----- 176
               AD L A       SL +  LH            E+   +M    LS          
Sbjct: 195 SEDPADILTA------DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE 248

Query: 177 --LLASYAGHTPLSITSDETTRKLLQYHLA 204
             ++ ++ G TPL + + E    L +  LA
Sbjct: 249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  +D  G TPLH A ++G + + R+LL +GADP+     G  PL  A E G  E+V+LL
Sbjct: 108 PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 114 PLH 116
             H
Sbjct: 168 SRH 170

Length = 664

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 73  WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS 132
           + DI   +L  GADP              A     E  +  PL  A +    +  +LL+ 
Sbjct: 45  YTDIIDAILKLGADPE-------------APFPLSENSKTNPLIYAIDCDNDDAAKLLIR 91

Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
           YGAD  +  YA         PL+ +   GC++ + +LLSYGAD  + +    TP+ +  
Sbjct: 92  YGAD--VNRYAEE---AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145

Length = 300

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
           PLH AA  G +E+V+LLL  GAD 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
           PLH AA  G +E+V+LLL  GAD 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 67  EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEM 126
             AS+  ++  R LL  GAD +     G  PLH             L LH ++EK   ++
Sbjct: 20  LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLH-------------LYLHYSSEK-VKDI 65

Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVE-MVRLLLSYGADPLLASY 181
           VRLLL  GAD          ++ P R    PLH          +++LL+  GAD      
Sbjct: 66  VRLLLEAGAD----------VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115

Query: 182 AGHTPLSI 189
            G TPL +
Sbjct: 116 VGRTPLHV 123

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL 170
               LH AA  G +E+V+ LL  G D                 LH AAE G +E+++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN------TALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 25/135 (18%)

Query: 57  KDNAGYTPLHEAASHGWLD--IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
           KD  G TPLH   S   ++  + RLLL  GAD +   + G+ PL             LL 
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA-----------VLLK 161

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE--KGCVEMVRLLLSY 172
             +A     VE++RLL+  GAD         F SL    LH   +  K    +VR L+  
Sbjct: 162 SRNA----NVELLRLLIDAGADVYAVD--DRFRSL----LHHHLQSFKPRARIVRELIRA 211

Query: 173 GADPLLASYAGHTPL 187
           G DP      G+TPL
Sbjct: 212 GCDPAATDMLGNTPL 226

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 48/151 (31%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G TPLH AA  GY D V   L K +     +D  G T L  A S     I R+L  + A 
Sbjct: 558 GRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKHHKIFRILYHF-AS 615

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVR-LLPL--------HD-------AAEKGCVEMVRLL 130
            SD    G   L  AA++  +  ++ LL          H        A  +  V+MVRLL
Sbjct: 616 ISDPHAAG-DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
           +  GAD   A+    F     R L    E G
Sbjct: 675 IMNGADVDKANTDDDFSPTELRELLQKRELG 705

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 152 RPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
             LH AA  G +E+V+ LL  G D       G+T L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 61 GYTPLHEAASHGWLDIARLLLMYGADP 87
          G TPLH AA +G L++ +LLL +GAD 
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
           PLH AA+ G +E+V+ LL  G D  L    G T L +
Sbjct: 19  PLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 39/207 (18%)

Query: 8   DTVEDVGAEVRSWVINKHHGET-------PLHRAARLGYIDAVAYCLEKFSHGPAPKDNA 60
           D  E +   +      +++  +       PLH+A     +D V   L +  H     D+ 
Sbjct: 11  DNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHR 69

Query: 61  GYTPLHEAASH-GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH--- 116
             TPLH        L +  ++         S    +  + DA     VE+ +++  +   
Sbjct: 70  DLTPLHIICKEPNKLGMKEMIRSIN---KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK 126

Query: 117 ----------------DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
                           D  E    E+ +LLLSYGAD  +           +  LH A E 
Sbjct: 127 NIQTIDLVYIDKKSKDDIIE---AEITKLLLSYGADINMKDR-----HKGNTALHYATEN 178

Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPL 187
               +  LLLSYGA+  +     ++PL
Sbjct: 179 KDQRLTELLLSYGANVNIPDKTNNSPL 205

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 14/121 (11%)

Query: 58  DNAGYTPLHEAASHGWLD--IARLL---LMYGADPSDSAIGGIRPL-HDAAEKGCVEMVR 111
           +N   TP H   +   +D  +A +L   L   A   D+   G R L    A+  C +   
Sbjct: 58  ENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAV--GARILLTGGADPNCRDYDG 115

Query: 112 LLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
             PLH A   G V++VR+LL +GADP L             PL  A E G  E+V+LL  
Sbjct: 116 RTPLHIACANGHVQVVRVLLEFGADPTLLDKD------GKTPLELAEENGFREVVQLLSR 169

Query: 172 Y 172
           +
Sbjct: 170 H 170

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           + G TPLH A   G++  V   LE F   P   D  G TPL  A  +G+ ++ +LL  + 
Sbjct: 113 YDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS 171

Query: 85  ADPSD 89
               +
Sbjct: 172 QCHFE 176

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 32/140 (22%)

Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP--------- 114
           PL  A   G  DI +LL+  G D S      I P+    +    +M++ +          
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTS------ILPIPCIEK----DMIKTILDCGIDVNIK 120

Query: 115 -------LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                  LH A +KG +E +++L  YGAD  +      +      P+H A +    ++++
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY------PIHIAIKHNFFDIIK 174

Query: 168 LLLSYGADPLLASYAGHTPL 187
           LLL  GA   +    G +PL
Sbjct: 175 LLLEKGAYANVKDNNGESPL 194

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL---- 112
           KD    TP+H AA  G   +  LLL YGAD +  A+  +  L  A +   ++ ++     
Sbjct: 174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN 233

Query: 113 --------LPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV- 163
                   L L  A     +E   LL  Y A   + S         + PLH A++   + 
Sbjct: 234 RSNINKNDLSLLKAIRNEDLETSLLL--YDAGFSVNSIDDC----KNTPLHHASQAPSLS 287

Query: 164 EMVRLLLSYGADPLLASYAGHTPL 187
            +V  LL  GAD    +  G TPL
Sbjct: 288 RLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 6/50 (12%)

Query: 126 MVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
           +  +LL  GAD  + +  +Y ++    P+H AAE+G  +MV LLLSYGAD
Sbjct: 160 IAEMLLEGGAD--VNAKDIYCIT----PIHYAAERGNAKMVNLLLSYGAD 203

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 39/164 (23%)

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
           D+ G TPLH AAS G+ D   +LL +  +       G   L +A      ++ R+L    
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614

Query: 114 ----P------LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDA 157
               P      L  AA++  +  ++ LL  G            L++ S        L  A
Sbjct: 615 SISDPHAAGDLLCTAAKRNDLTAMKELLKQG------------LNVDSEDHQGATALQVA 662

Query: 158 AEKGCVEMVRLLLSYGADPLLAS-YAGHTPLSITSDETTRKLLQ 200
             +  V+MVRLL+  GAD   A+     +P         R+LLQ
Sbjct: 663 MAEDHVDMVRLLIMNGADVDKANTDDDFSP------TELRELLQ 700

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
           PLH AAE G +E+V+LLL  GAD 
Sbjct: 5   PLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
           PLH AAE G +E+V+LLL  GAD 
Sbjct: 5   PLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADP 137
           PLH AA  G +E+V+LLL +GAD 
Sbjct: 5   PLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADP 176
           PLH AA  G +E+V+LLL +GAD 
Sbjct: 5   PLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 61 GYTPLHEAASHGWLDIARLLLMYGADPSD 89
          G TPLH AA +G L++ +LLL  GAD + 
Sbjct: 2  GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA03095	471	ankyrin-like protein; Provisional	99.98
KOG0509|consensus	600		99.97
KOG4412|consensus	226		99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0510|consensus	929		99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0510|consensus	929		99.96
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0509|consensus	600		99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508|consensus	615		99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
KOG4177|consensus	1143		99.94
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0508|consensus	615		99.92
KOG4177|consensus	1143		99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG0514|consensus	452		99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0505|consensus	527		99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0502|consensus	296		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0507|consensus	854		99.86
KOG0502|consensus	296		99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
KOG0507|consensus	854		99.85
KOG0195|consensus	448		99.84
KOG0512|consensus	228		99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0514|consensus	452		99.82
KOG0505|consensus	527		99.82
KOG3676|consensus	782		99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG4369|consensus	2131		99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG0512|consensus	228		99.74
KOG0195|consensus	448		99.72
KOG4369|consensus	2131		99.68
KOG4214|consensus	117		99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG3676|consensus	782		99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG4214|consensus	117		99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG0515|consensus	752		99.42
KOG1710|consensus	396		99.41
KOG0515|consensus	752		99.4
KOG1710|consensus	396		99.37
KOG0818|consensus	669		99.03
PF13606	30	Ank_3: Ankyrin repeat	99.0
KOG0506|consensus	622		98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.94
KOG0783|consensus	1267		98.94
PF13606	30	Ank_3: Ankyrin repeat	98.9
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.87
KOG0783|consensus	1267		98.82
KOG0506|consensus	622		98.78
KOG0818|consensus	669		98.67
KOG0782|consensus	1004		98.66
KOG0522|consensus	560		98.54
KOG0705|consensus	749		98.49
KOG0522|consensus	560		98.47
KOG0782|consensus	1004		98.46
KOG3609|consensus	822		98.42
KOG0705|consensus	749		98.41
KOG0511|consensus	516		98.29
KOG0511|consensus	516		98.29
KOG2505|consensus	591		98.16
KOG2384|consensus	223		98.12
KOG0521|consensus	785		98.11
KOG2384|consensus	223		98.0
KOG0521|consensus	785		97.98
KOG0520|consensus	975		97.76
KOG3609|consensus	822		97.74
KOG0520|consensus	975		97.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.37
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.15
KOG2505|consensus	591		96.87
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.26
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.25
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.84

>KOG4412|consensus

Probab=100.00  E-value=1.2e-35  Score=206.23  Aligned_cols=178  Identities=36%  Similarity=0.486  Sum_probs=136.0

Q ss_pred             HHHHHHHhhhhceeEeecC-CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc-C
Q psy5702           7 GDTVEDVGAEVRSWVINKH-HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY-G   84 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~-~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g   84 (235)
                      -++-|..-++..+.+.++. +|+||||+||..|+.+++.+|++..+..++.+|..|+||||+|+..|+.++|+.|+.. |
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~   96 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSG   96 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCC
Confidence            3344444455557777776 9999999999999999999999877888899999999999999999999999999998 9


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      +|++..+..|.|+||+|+..++.++..+|                |+|-|+..|+.+++++|++.|+.+|.++      +
T Consensus        97 advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qD------k  170 (226)
T KOG4412|consen   97 ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQD------K  170 (226)
T ss_pred             CCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCccc------c
Confidence            99999999999999999988877776655                5666666666666666666666666555      5


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhcc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS  191 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~  191 (235)
                      .|+||||.|.-.|+.+....|+++||+++..|+.| ||+..|+
T Consensus       171 ~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  171 YGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             cCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            66666666655556666666666666666666655 5655544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-34  Score=220.75  Aligned_cols=190  Identities=21%  Similarity=0.189  Sum_probs=169.2

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      ....++++.+.+.+..  .+|.+|.||||+|+..|+.++++.|++. +.+++..  .|.||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            4567888888888774  5899999999999999999999999998 6666655  478999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhh
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      |++++.+|..|.||||+|+..++.+++++|                 |+|.|+..|+.+++++|++++.+..  +.    
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~----  157 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL----  157 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--cc----
Confidence            999999999999999999999999999988                 8999999999999999999875431  10    


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCCh-hhhccchhhHHHHHHhhcc
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP-LSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~a~~~~~~~~l~~~~~~  205 (235)
                       ..|.||||+|++.|+.+++++|+++|++++.+|..|.|| ||+|+..+..++++.++..
T Consensus       158 -~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        158 -AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             -ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence             247899999999999999999999999999999999987 9999998888888776554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=212.13  Aligned_cols=187  Identities=20%  Similarity=0.167  Sum_probs=169.1

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..++++.++..+.+.+.++  |.||||+|+..|+.++++.|++. +++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        41 g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~-Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g  117 (284)
T PHA02791         41 NNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS-GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  117 (284)
T ss_pred             CCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            45678899999999887664  78999999999999999999987 8899999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-CcHHHHHHHhCChhHHHHh---------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          85 ADPSDSAIGG-IRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        85 ~~~~~~~~~g-~t~l~~a~~~~~~~~~~~l---------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      ++++.++..| .||||+|+..++.+++++|               |||.|+..|+.+++++|+++|++++..+      .
T Consensus       118 adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d------~  191 (284)
T PHA02791        118 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN------S  191 (284)
T ss_pred             CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCccc------C
Confidence            9999988887 5899999999999999887               9999999999999999999999999887      6


Q ss_pred             CCCch-HHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         149 LPSRP-LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       149 ~~~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      .|.|| ||+|+..|+.+++++|+++|++++.+|..| ||+      +..|++++++.+.-
T Consensus       192 ~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        192 LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            78876 999999999999999999999999999954 777      45677777776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=231.81  Aligned_cols=191  Identities=30%  Similarity=0.375  Sum_probs=105.0

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHH--HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHh
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAA--RLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLM   82 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~--~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~   82 (235)
                      .+.++.++..|.+++..|..|.||||+|+  ..|+.+++++|++. +.+++..+..|.||||+|+..+  +.+++++|++
T Consensus        86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~  164 (480)
T PHA03100         86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLID  164 (480)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH
Confidence            44455555555555555555555555555  55555555555554 4455555555555555555555  5555555555


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------------HHHHHHHcCC--HHHHHHHHHcCCCCc
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------------PLHDAAEKGC--VEMVRLLLSYGADPL  138 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------------~l~~a~~~~~--~~~~~~l~~~g~~~~  138 (235)
                      .|++++.++..|.||||+|+..++.+++++|                      |+|.|+..++  .+++++|+++|++++
T Consensus       165 ~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        165 KGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             CCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555555544                      4455555555  555555555555555


Q ss_pred             chhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         139 LASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       139 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ..+      ..|.||||.|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++.++.
T Consensus       245 ~~d------~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        245 IKD------VYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             CCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            544      455556666655555555555555555555555555566655555555555554444

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=227.48  Aligned_cols=191  Identities=22%  Similarity=0.277  Sum_probs=168.8

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHhc
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLMY   83 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~   83 (235)
                      ..++++.+++.|.+++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..+  ..+++++|++.
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999998 8999999999999999998866  47899999999


Q ss_pred             CCCCCC-CCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcC--CHHHHHHHHHcCCCCcchhhhh
Q psy5702          84 GADPSD-SAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG--CVEMVRLLLSYGADPLLASYAV  144 (235)
Q Consensus        84 g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~--~~~~~~~l~~~g~~~~~~~~~~  144 (235)
                      |++++. .+..|.|||+ |+..++.++++.|                |+|.|+..+  ..+++++|+++|++++..+   
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d---  205 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPD---  205 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccC---
Confidence            999995 6889999997 5666888888887                888887654  4689999999999999888   


Q ss_pred             hhccCCCchHHHHHhcC--CHHHHHHHHHCCCCCCCccccCCChhhhccchhh-HHHHHHhhcc
Q psy5702         145 YFLSLPSRPLHDAAEKG--CVEMVRLLLSYGADPLLASYAGHTPLSITSDETT-RKLLQYHLAD  205 (235)
Q Consensus       145 ~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~-~~~l~~~~~~  205 (235)
                         ..|.||||+|+..+  +.+++++|++ |++++.+|..|.||||+|++.+. .++++.++..
T Consensus       206 ---~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        206 ---HDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             ---CCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence               89999999999986  7899999985 89999999999999999998755 3555555443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=231.73  Aligned_cols=221  Identities=26%  Similarity=0.270  Sum_probs=197.2

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHH-----HHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--hcCCHHH
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHR-----AARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAA--SHGWLDI   76 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~-----A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~   76 (235)
                      ....+.++.++..|.+.+..+..|.+|||+     |+..++.+++++|++. |++++..+..|.||||+|+  ..|+.++
T Consensus        45 ~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         45 ARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLYAISKKSNSYSI  123 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCCCCCCCchhhHHHhcccChHHH
Confidence            456789999999999999999999999999     9999999999999998 7888999999999999999  9999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhC--ChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCc
Q psy5702          77 ARLLLMYGADPSDSAIGGIRPLHDAAEKG--CVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPL  138 (235)
Q Consensus        77 v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~  138 (235)
                      +++|++.|++++..+..|.||||+|+..+  +.+++++|                |+|+|+..|+.+++++|+++|++++
T Consensus       124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  203 (480)
T PHA03100        124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN  203 (480)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999  89999988                9999999999999999999999988


Q ss_pred             chhhhhhhccCC------CchHHHHHhcCC--HHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCC
Q psy5702         139 LASYAVYFLSLP------SRPLHDAAEKGC--VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHE  210 (235)
Q Consensus       139 ~~~~~~~~~~~~------~t~L~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~  210 (235)
                      ..+      ..|      .||||.|+..++  .+++++|+++|++++.+|..|.||||+|+..+..++++.++....  +
T Consensus       204 ~~~------~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga--d  275 (480)
T PHA03100        204 AGD------IETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA--N  275 (480)
T ss_pred             CCC------CCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--C
Confidence            776      556      899999999999  999999999999999999999999999999988999998877643  4


Q ss_pred             CCcccccCCCcccccccccCCCC
Q psy5702         211 APKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      ....+..|.+++..+...|..++
T Consensus       276 ~n~~d~~g~tpl~~A~~~~~~~i  298 (480)
T PHA03100        276 PNLVNKYGDTPLHIAILNNNKEI  298 (480)
T ss_pred             CCccCCCCCcHHHHHHHhCCHHH
Confidence            44455666677776666655443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=228.04  Aligned_cols=217  Identities=25%  Similarity=0.247  Sum_probs=124.6

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC-CHHHHHHHHh
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLG---YIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG-WLDIARLLLM   82 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~---~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~   82 (235)
                      .+.++.++..|.+++.++..|.||||+|+..+   +.++++.|++. |++++.++..|.||||+|+..+ ..+++++|++
T Consensus        27 ~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~  105 (471)
T PHA03095         27 VEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLHLYLYNATTLDVIKLLIK  105 (471)
T ss_pred             HHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH
Confidence            45555555555555555555555555555555   55555555555 5555555555555555555555 3555555555


Q ss_pred             cCCCCCCCCCCCCcHHHHHH--HhCChhHHHHh----------------HHHHHHHc-----------------------
Q psy5702          83 YGADPSDSAIGGIRPLHDAA--EKGCVEMVRLL----------------PLHDAAEK-----------------------  121 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~--~~~~~~~~~~l----------------~l~~a~~~-----------------------  121 (235)
                      .|++++.++..|.||||+|+  ..++.+++++|                |+|.|+..                       
T Consensus       106 ~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~  185 (471)
T PHA03095        106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD  185 (471)
T ss_pred             cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCC
Confidence            55555555555555555555  22344455544                44444332                       


Q ss_pred             --------------CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH--HHHHHHHHCCCCCCCccccCCC
Q psy5702         122 --------------GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV--EMVRLLLSYGADPLLASYAGHT  185 (235)
Q Consensus       122 --------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~v~~Ll~~ga~~~~~~~~g~t  185 (235)
                                    +..++++.|+++|++++..+      ..|+||||+|+..+..  .++..|++.|++++.+|..|.|
T Consensus       186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d------~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~T  259 (471)
T PHA03095        186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATD------MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQT  259 (471)
T ss_pred             CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccC------CCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCC
Confidence                          34444455555555444444      5666777777766653  4566677777777777777777


Q ss_pred             hhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCC
Q psy5702         186 PLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEP  232 (235)
Q Consensus       186 ~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  232 (235)
                      |||+|+..+..++++.++..  +.+....+..|.+++..+...|+.+
T Consensus       260 pLh~A~~~~~~~~v~~LL~~--gad~n~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        260 PLHYAAVFNNPRACRRLIAL--GADINAVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCCHH
Confidence            77777777666666666654  2233333445556666655555543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-31  Score=220.88  Aligned_cols=196  Identities=20%  Similarity=0.195  Sum_probs=179.9

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.+++.|.+.+.++..|.||||+|+..++.+++++|++. |..++..+..+.||||.|+..|+.+++++|++.
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            3456889999999999999999999999999999999999999998 778888888999999999999999999999999


Q ss_pred             CCCCC-CCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhh
Q psy5702          84 GADPS-DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        84 g~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      |.+.. ..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+     
T Consensus        91 ~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d-----  165 (413)
T PHA02875         91 GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED-----  165 (413)
T ss_pred             CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCC-----
Confidence            98764 4567899999999999999999998                9999999999999999999999999888     


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCC-ChhhhccchhhHHHHHHhhccc
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH-TPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~-t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                       ..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..+..++++.++...
T Consensus       166 -~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        166 -CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence             7899999999999999999999999999999998874 8899999988888888777653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=222.64  Aligned_cols=183  Identities=26%  Similarity=0.296  Sum_probs=131.2

Q ss_pred             cchHHHHHHHhh-hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGA-EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~-~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      ++-.+.++.++. .+..++..+..|.||||.|++.|+.+++++|++. |.+++..+..|.||||.|+..|+.+++++|++
T Consensus        11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            344566666665 3444566777777777777777777777777776 66777777777777777777777777777766


Q ss_pred             cCC-----------------------CCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCC
Q psy5702          83 YGA-----------------------DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGC  123 (235)
Q Consensus        83 ~g~-----------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~  123 (235)
                      .|+                       +++.++..|.||||+|+..++.+++++|                |+|+|+..++
T Consensus        90 ~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~  169 (434)
T PHA02874         90 NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF  169 (434)
T ss_pred             CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCc
Confidence            543                       4556677777777777777777777776                7777777777


Q ss_pred             HHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       124 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      .+++++|+++|++++..+      ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus       170 ~~iv~~Ll~~g~~~n~~~------~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        170 FDIIKLLLEKGAYANVKD------NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             HHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            777777777777776666      6677777777777777777777777777666666666666666654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=221.80  Aligned_cols=174  Identities=27%  Similarity=0.299  Sum_probs=165.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      ++++||.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|++.|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            57899999999999999999998 88899999999999999999999999999999999999998899999999999999


Q ss_pred             hhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHH
Q psy5702         107 VEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL  169 (235)
Q Consensus       107 ~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  169 (235)
                      .++++.|                 |+|+|+..|+.+++++|+++|++++..+      ..|.||||+|+..|+.+++++|
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~------~~g~tpLh~A~~~~~~~~v~~L  154 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN------TDKFSPLHLAVMMGDIKGIELL  154 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHH
Confidence            9999887                 8999999999999999999999999887      7899999999999999999999


Q ss_pred             HHCCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         170 LSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       170 l~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      +++|++++.+|..|.||||+|+..+..++++.++....
T Consensus       155 l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga  192 (413)
T PHA02875        155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA  192 (413)
T ss_pred             HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999999999999998888888776543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-31  Score=223.94  Aligned_cols=201  Identities=20%  Similarity=0.161  Sum_probs=177.4

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC---CHHH
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARL-----GYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG---WLDI   76 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~-----~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~   76 (235)
                      ...++++.++..|++++.+|..|.||||.|+..     +..+++++|++. |++++.+|..|.||||+|+..+   +.++
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            467899999999999999999999999999864     668999999998 8999999999999999999875   7899


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHhCC---hhHHHHh-----------------HHHHHHHc----CCHHHHHHHHH
Q psy5702          77 ARLLLMYGADPSDSAIGGIRPLHDAAEKGC---VEMVRLL-----------------PLHDAAEK----GCVEMVRLLLS  132 (235)
Q Consensus        77 v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~l-----------------~l~~a~~~----~~~~~~~~l~~  132 (235)
                      +++|++.|++++..|..|.||||+|+..++   .+++++|                 |+|.+...    ++.+++++|++
T Consensus       128 v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        128 LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            999999999999999999999999999887   8888887                 78877654    47999999999


Q ss_pred             cCCCCcchhhh---------------------------------hhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCc
Q psy5702         133 YGADPLLASYA---------------------------------VYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA  179 (235)
Q Consensus       133 ~g~~~~~~~~~---------------------------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  179 (235)
                      +|++++..+..                                 +..+..|.||||+|+..++.+++++|+++|||++.+
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            99877653210                                 112367999999999999999999999999999999


Q ss_pred             cccCCChhhhccchhhHHHHHHhhccc
Q psy5702         180 SYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       180 ~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      |..|+|||++|+..+..++++.++...
T Consensus       288 d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        288 TELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            999999999999999998888877654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-31  Score=218.34  Aligned_cols=216  Identities=23%  Similarity=0.224  Sum_probs=185.0

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhC----------------------CCCCCCCCCCC
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKF----------------------SHGPAPKDNAG   61 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~----------------------~~~~~~~~~~g   61 (235)
                      .+..+.++.++..|.+++..+..|.+|||+|+..|+.+++++|++.+                      +.+++..+..|
T Consensus        45 ~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g  124 (434)
T PHA02874         45 SGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAEL  124 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCC
Confidence            45678999999999999999999999999999999999999999862                      34466788899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHH
Q psy5702          62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVE  125 (235)
Q Consensus        62 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~  125 (235)
                      .||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|                |+|.|+..|+.+
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999999998                999999999999


Q ss_pred             HHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh-hHHHHHHhhc
Q psy5702         126 MVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET-TRKLLQYHLA  204 (235)
Q Consensus       126 ~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~-~~~~l~~~~~  204 (235)
                      ++++|++.|++++..+      ..|.||||.|+..+. ..+.+|+ .|++++.+|..|.||||+|+..+ ..++++.++.
T Consensus       205 iv~~Ll~~g~~i~~~~------~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~  276 (434)
T PHA02874        205 CIKLLIDHGNHIMNKC------KNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLY  276 (434)
T ss_pred             HHHHHHhCCCCCcCCC------CCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH
Confidence            9999999999988877      789999999999865 5666666 68999999999999999999753 5666666655


Q ss_pred             cccCCCCCcccccCCCccccccccc
Q psy5702         205 DVRGHEAPKWDFAGPASCFDKQMVG  229 (235)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~g  229 (235)
                      ..  .+....+..|.+++..+...+
T Consensus       277 ~g--ad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        277 HK--ADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             Cc--CCCCCCCCCCCCHHHHHHHhC
Confidence            42  222333445666666665544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=3.8e-31  Score=226.38  Aligned_cols=211  Identities=17%  Similarity=0.121  Sum_probs=173.5

Q ss_pred             cchHHHHHHHhhhh-ceeEee-cCCCCcHHHHHHHc--CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC--HHHH
Q psy5702           4 QSLGDTVEDVGAEV-RSWVIN-KHHGETPLHRAARL--GYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW--LDIA   77 (235)
Q Consensus         4 ~~~~~~~~~~~~~~-~~~~~~-d~~g~~~L~~A~~~--~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~v   77 (235)
                      ....+.++.++..| .+++.+ |..|.||||+|+..  ++.+++++|+++ |++++.+|..|.||||+|++.|+  .+++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            35568999999999 999999 99999999998754  578999999998 89999999999999999999995  5899


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHH---HhCChhHHHHh--------------H---HHHHHHcCCHHHHHHHHHcCCCC
Q psy5702          78 RLLLMYGADPSDSAIGGIRPLHDAA---EKGCVEMVRLL--------------P---LHDAAEKGCVEMVRLLLSYGADP  137 (235)
Q Consensus        78 ~~Ll~~g~~~~~~~~~g~t~l~~a~---~~~~~~~~~~l--------------~---l~~a~~~~~~~~~~~l~~~g~~~  137 (235)
                      ++|++.|++++.++..|.||||.|+   ..++.++++.+              +   +..|+..|+.+++++|++.|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            9999999999999999999999875   34567776655              1   23467889999999999999999


Q ss_pred             cchhhhhhhccCCCchHHHHHh--cCCHHHHHHHHHCCCCCCCccccCCChhhhccc--------------hhhHHHHHH
Q psy5702         138 LLASYAVYFLSLPSRPLHDAAE--KGCVEMVRLLLSYGADPLLASYAGHTPLSITSD--------------ETTRKLLQY  201 (235)
Q Consensus       138 ~~~~~~~~~~~~~~t~L~~A~~--~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~--------------~~~~~~l~~  201 (235)
                      +..+      ..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.              .+..++++.
T Consensus       311 N~kD------~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        311 HYKD------SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             eccC------CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            9888      789999999875  457899999999999999999999999998753              245566666


Q ss_pred             hhccccCCCCCcccccCCCccc
Q psy5702         202 HLADVRGHEAPKWDFAGPASCF  223 (235)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~  223 (235)
                      ++...  .+....+..|.+++.
T Consensus       385 LL~~G--ADIn~kn~~G~TPLh  404 (764)
T PHA02716        385 LISLG--ADITAVNCLGYTPLT  404 (764)
T ss_pred             HHHCC--CCCCCcCCCCCChHH
Confidence            66542  222233334555553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.98  E-value=3.9e-31  Score=222.02  Aligned_cols=154  Identities=29%  Similarity=0.272  Sum_probs=130.2

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC-Ch
Q psy5702          32 HRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG---WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG-CV  107 (235)
Q Consensus        32 ~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~-~~  107 (235)
                      ..++..++++++++|++. |.+++..+..|.||||+|+..+   +.+++++|++.|++++.++..|.||||+|+..+ ..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcH
Confidence            456677889999999998 8999999999999999999998   999999999999999999999999999999999 59


Q ss_pred             hHHHHh----------------HHHHHH--HcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcC--CHHHHH
Q psy5702         108 EMVRLL----------------PLHDAA--EKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG--CVEMVR  167 (235)
Q Consensus       108 ~~~~~l----------------~l~~a~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~  167 (235)
                      +++++|                |+|.|+  ..++.+++++|+++|++++..+      ..|.||||+|+..+  +.++++
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d------~~g~tpL~~a~~~~~~~~~iv~  171 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD------LYGMTPLAVLLKSRNANVELLR  171 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCCCHHHHH
Confidence            999988                999999  5568899999999999998877      66777777776654  456666


Q ss_pred             HHHHCCCCCCCccccCCChhhhccc
Q psy5702         168 LLLSYGADPLLASYAGHTPLSITSD  192 (235)
Q Consensus       168 ~Ll~~ga~~~~~~~~g~t~l~~a~~  192 (235)
                      +|+++|++++..|..|.||||+++.
T Consensus       172 ~Ll~~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        172 LLIDAGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHH
Confidence            6666666666666666666666553

>KOG0509|consensus

Probab=99.97  E-value=1.5e-31  Score=217.52  Aligned_cols=206  Identities=33%  Similarity=0.397  Sum_probs=181.5

Q ss_pred             cchHHHHHHHhhh-hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHH
Q psy5702           4 QSLGDTVEDVGAE-VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASHGWLDIARLLL   81 (235)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll   81 (235)
                      .+-.+.++.+.+. +.+++-.|.+|.++||+|+.+++.+++++||++ ++++|... .-+.||||+|++.|+..++++|+
T Consensus        54 ~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLl  132 (600)
T KOG0509|consen   54 YGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLL  132 (600)
T ss_pred             cchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHH
Confidence            3456778888888 999999999999999999999999999999999 88888887 78999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhh
Q psy5702          82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY  145 (235)
Q Consensus        82 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~  145 (235)
                      ++|+|++.+|..|.+|+|.|++.++.-.+-++                |+++|+.+|....+..|+..|+.+...+.   
T Consensus       133 qhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~---  209 (600)
T KOG0509|consen  133 QHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDD---  209 (600)
T ss_pred             HcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccc---
Confidence            99999999999999999999999999988877                99999999998889999999999888774   


Q ss_pred             hccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCccc
Q psy5702         146 FLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWD  215 (235)
Q Consensus       146 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~  215 (235)
                        ..|.||||+|+..|+..++..|++.|++.+..|.+|+||++.|.+......+.......-++..++|.
T Consensus       210 --~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~~~~~~~~h~~~~~~~~~~~K~~  277 (600)
T KOG0509|consen  210 --NHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQERKLVAALHHDVVERLGKVVKKWF  277 (600)
T ss_pred             --ccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHhhhHHHhhccHHHhhcccccchh
Confidence              78999999999999999999777788999999999999999998774444444445554455555554

>KOG4412|consensus

Probab=99.97  E-value=1.2e-31  Score=186.31  Aligned_cols=178  Identities=31%  Similarity=0.330  Sum_probs=156.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHhcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDN-AGYTPLHEAASHGWLDIARLLL-MYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      +.++.+.+|...-...++.+++.....++.++. +|+|||||||+.|+.+++.+|+ +.+..++.+|..|.||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            567888899988888999999876656676666 8999999999999999999999 45888999999999999999999


Q ss_pred             CChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHH
Q psy5702         105 GCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR  167 (235)
Q Consensus       105 ~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  167 (235)
                      |+.++++.|                 +||+|+..|..++.++|+++|+.++.++      ..|.||||.|+.-|..++++
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD------~~~qtplHRAAavGklkvie  156 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKD------KQGQTPLHRAAAVGKLKVIE  156 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccc------cccCchhHHHHhccchhhHH
Confidence            999999988                 8999999999999999999999999999      89999999999999999999


Q ss_pred             HHHHCCCCCCCccccCCChhhhccchhhHH---HHHHhhccccCCC
Q psy5702         168 LLLSYGADPLLASYAGHTPLSITSDETTRK---LLQYHLADVRGHE  210 (235)
Q Consensus       168 ~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~---~l~~~~~~~~~~~  210 (235)
                      +|+..|+.+|..|..|+||||.|...++.+   ++...+++....+
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            999999999999999999999995433333   3444455544443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=219.02  Aligned_cols=182  Identities=28%  Similarity=0.285  Sum_probs=146.1

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHH----------------------------------------
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAV----------------------------------------   43 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v----------------------------------------   43 (235)
                      .+..++++.+++.|.+++.+|..|.||||+||..|+.+.+                                        
T Consensus        47 ~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~  126 (477)
T PHA02878         47 ARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK  126 (477)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCccc
Confidence            3456888899999999999999999999999887655443                                        


Q ss_pred             ------------------------HHHHHhCCCCCCCCCCC-CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          44 ------------------------AYCLEKFSHGPAPKDNA-GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        44 ------------------------~~li~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                                              ++|++. |++++..+.. |.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpL  205 (477)
T PHA02878        127 NIQTIDLVYIDKKSKDDIIEAEITKLLLSY-GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL  205 (477)
T ss_pred             CcccCcHHHHhhccchhhHHHHHHHHHHHc-CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                                    333333 5566667776 88888888888888888888888888888888888888


Q ss_pred             HHHHHhCChhHHHHh----------------HHHHHHHc-CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcC
Q psy5702          99 HDAAEKGCVEMVRLL----------------PLHDAAEK-GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG  161 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l----------------~l~~a~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~  161 (235)
                      |.|+..++.+++++|                |+|+|+.. ++.+++++|+++|++++..+.     ..|.||||+|  .+
T Consensus       206 h~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~-----~~g~TpLh~A--~~  278 (477)
T PHA02878        206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY-----ILGLTALHSS--IK  278 (477)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC-----CCCCCHHHHH--cc
Confidence            888888888888887                88888865 678888888888888887652     3688888888  46


Q ss_pred             CHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         162 CVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       162 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      +.+++++|+++|+|++..|..|.||||+|+..
T Consensus       279 ~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        279 SERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            77888888888888888888888888888753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=215.33  Aligned_cols=189  Identities=28%  Similarity=0.328  Sum_probs=156.6

Q ss_pred             HHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH-------------
Q psy5702           8 DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWL-------------   74 (235)
Q Consensus         8 ~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~-------------   74 (235)
                      +.++.+...+.-....+..+.+|||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.             
T Consensus        18 ~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~   96 (477)
T PHA02878         18 KYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC   96 (477)
T ss_pred             HHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc
Confidence            334443333333334456789999999999999999999998 889999999999999999976543             


Q ss_pred             ---------------------------------------------------HHHHHHHhcCCCCCCCCCC-CCcHHHHHH
Q psy5702          75 ---------------------------------------------------DIARLLLMYGADPSDSAIG-GIRPLHDAA  102 (235)
Q Consensus        75 ---------------------------------------------------~~v~~Ll~~g~~~~~~~~~-g~t~l~~a~  102 (235)
                                                                         +++++|++.|++++..+.. |.||||+|+
T Consensus        97 ~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~  176 (477)
T PHA02878         97 SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYAT  176 (477)
T ss_pred             ccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHH
Confidence                                                               2667777888999988888 999999999


Q ss_pred             HhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhc-CCHHH
Q psy5702         103 EKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK-GCVEM  165 (235)
Q Consensus       103 ~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~  165 (235)
                      ..++.+++++|                |+|.|+..++.+++++|++.|++++..+      ..|.||||+|+.. ++.++
T Consensus       177 ~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d------~~g~TpLh~A~~~~~~~~i  250 (477)
T PHA02878        177 ENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD------KCGNTPLHISVGYCKDYDI  250 (477)
T ss_pred             hCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHhcCCHHH
Confidence            99999999988                8999999999999999999999999888      7899999999975 68999


Q ss_pred             HHHHHHCCCCCCCccc-cCCChhhhccchhhHHHHHHhhcc
Q psy5702         166 VRLLLSYGADPLLASY-AGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       166 v~~Ll~~ga~~~~~~~-~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +++|+++|++++.++. .|.||||+|..  ..++++.++..
T Consensus       251 v~~Ll~~gadvn~~~~~~g~TpLh~A~~--~~~~v~~Ll~~  289 (477)
T PHA02878        251 LKLLLEHGVDVNAKSYILGLTALHSSIK--SERKLKLLLEY  289 (477)
T ss_pred             HHHHHHcCCCCCccCCCCCCCHHHHHcc--CHHHHHHHHHC
Confidence            9999999999998876 79999999953  34445544433

>KOG0510|consensus

Probab=99.97  E-value=4.6e-31  Score=219.28  Aligned_cols=229  Identities=26%  Similarity=0.311  Sum_probs=208.6

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      ...+.|+-+++.|++..+.+..+.+|+|+|+..+++++++.|++. +.++|..|..|.||||+||..++.|..+.|++.|
T Consensus        99 ~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~  177 (929)
T KOG0510|consen   99 NQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFTPLHLAARKNKVEAKKELINKG  177 (929)
T ss_pred             chHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHh-cCCccccccCCCchhhHHHhcChHHHHHHHHhcC
Confidence            457889999999999999999999999999999999999999998 6999999999999999999999999889999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh---------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhh-
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------------PLHDAAEKGCVEMVRLLLSYGADPLLASY-  142 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l---------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~-  142 (235)
                      +++...|.+|.+|+|.|++.+..++.+.+                     |+|.|+..|++++++.++..|........ 
T Consensus       178 a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~  257 (929)
T KOG0510|consen  178 ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD  257 (929)
T ss_pred             CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhH
Confidence            99999999999999999999999998876                     99999999999999999998765433320 


Q ss_pred             --------hhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcc
Q psy5702         143 --------AVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKW  214 (235)
Q Consensus       143 --------~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~  214 (235)
                              .+-.|.+|.||||+|++.|..++++.|+..|++++.++.++.||||.|+..+....++.++...+-...+..
T Consensus       258 ~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~  337 (929)
T KOG0510|consen  258 AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNES  337 (929)
T ss_pred             HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccc
Confidence                    112347899999999999999999999999999999999999999999999999999999996667777888


Q ss_pred             cccCCCcccccccccCCCCC
Q psy5702         215 DFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       215 ~~~~~~~~~~~~~~g~~~~~  234 (235)
                      +..|.+++..+...||+.++
T Consensus       338 D~~g~tpLHlaa~~gH~~v~  357 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVV  357 (929)
T ss_pred             cccCCCchhhhhhcCHHHHH
Confidence            99999999999999987654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=213.32  Aligned_cols=200  Identities=19%  Similarity=0.107  Sum_probs=148.4

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHH------cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc---CCHHH
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAAR------LGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH---GWLDI   76 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~------~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~   76 (235)
                      ..++++.|+++|++++.++ .+.||||.|+.      .+..+++++|++. |++++.+|..|.||||.|+..   ++.++
T Consensus        49 ~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         49 KIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             ChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHhcccCcHHH
Confidence            4567777777777777765 45777777654      3566777777776 677777777777777766543   56677


Q ss_pred             HHHHHhcCCCC-CCCCCCCCcHHHHHHHh--CChhHHHHh-----------------HHHHHHHc----CCHHHHHHHHH
Q psy5702          77 ARLLLMYGADP-SDSAIGGIRPLHDAAEK--GCVEMVRLL-----------------PLHDAAEK----GCVEMVRLLLS  132 (235)
Q Consensus        77 v~~Ll~~g~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~l-----------------~l~~a~~~----~~~~~~~~l~~  132 (235)
                      +++|++.|+++ +.++..|.||||+|+..  ++.+++++|                 |+|.|+..    ++.+++++|++
T Consensus       127 v~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~  206 (494)
T PHA02989        127 LRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIK  206 (494)
T ss_pred             HHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHh
Confidence            77777777777 66777777777776543  456666666                 66666544    36777777777


Q ss_pred             cCCCCcchhhh--------------------------------hhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         133 YGADPLLASYA--------------------------------VYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       133 ~g~~~~~~~~~--------------------------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                      .|++++..+..                                ...+..|+||||+|+..++.+++++|+++|+|++.+|
T Consensus       207 ~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d  286 (494)
T PHA02989        207 KGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS  286 (494)
T ss_pred             CCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccC
Confidence            77776554420                                1123679999999999999999999999999999999


Q ss_pred             ccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         181 YAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       181 ~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      ..|.||||+|+..+..++++.++....
T Consensus       287 ~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        287 KDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999999999999998887643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=1.2e-29  Score=217.32  Aligned_cols=159  Identities=20%  Similarity=0.182  Sum_probs=122.1

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCCCCCCCCCCcHHHHH----------------
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLGY--IDAVAYCLEKFSHGPAPKDNAGYTPLHEA----------------   68 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~--~~~v~~li~~~~~~~~~~~~~g~t~L~~A----------------   68 (235)
                      .++++.|+++|.+++.+|..|.||||+|+..|+  .+++++|++. |++++.++..|.||||+|                
T Consensus       192 ~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLi  270 (764)
T PHA02716        192 IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYI  270 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHH
Confidence            478889999999999999999999999999885  4889999987 888898999999999865                


Q ss_pred             ---------------------HhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--hCChhHHHHh------------
Q psy5702          69 ---------------------ASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAE--KGCVEMVRLL------------  113 (235)
Q Consensus        69 ---------------------~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~--~~~~~~~~~l------------  113 (235)
                                           ++.|+.+++++|++.|++++.+|..|.||||+|+.  .++.+++++|            
T Consensus       271 e~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        271 ESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             HhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCC
Confidence                                 33467788888999999999889999999998764  3567888877            


Q ss_pred             ----HHHHHHH--------------cCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH----HhcCCHHHHHHHHH
Q psy5702         114 ----PLHDAAE--------------KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA----AEKGCVEMVRLLLS  171 (235)
Q Consensus       114 ----~l~~a~~--------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A----~~~~~~~~v~~Ll~  171 (235)
                          |||+|+.              .++.+++++|+++|++++..+      ..|.||||.+    ...++.+++++|++
T Consensus       351 ~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn------~~G~TPLh~y~~~a~n~~~~dIvklLis  424 (764)
T PHA02716        351 IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVN------CLGYTPLTSYICTAQNYMYYDIIDCLIS  424 (764)
T ss_pred             CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcC------CCCCChHHHHHHHHHhcChHHHHHHHHh
Confidence                8887754              357888888888888877666      5566666521    11234455555544


Q ss_pred             C
Q psy5702         172 Y  172 (235)
Q Consensus       172 ~  172 (235)
                      .
T Consensus       425 ~  425 (764)
T PHA02716        425 D  425 (764)
T ss_pred             C
Confidence            3

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.2e-29  Score=217.93  Aligned_cols=195  Identities=23%  Similarity=0.193  Sum_probs=129.6

Q ss_pred             ccchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH-
Q psy5702           3 TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL-   81 (235)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-   81 (235)
                      +++..+.++.|+..|.+++.+|..|.||||+|++.|+.+++++|++. |++++..+..|.||||.|+..++.++++.|+ 
T Consensus       154 ~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~  232 (682)
T PHA02876        154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIID  232 (682)
T ss_pred             HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            34567889999999999999999999999999999999999999998 7777777777777777777666665554443 


Q ss_pred             ----------------------------hcCCCCCCCCCCCCcHHHHHHHhCCh-hHHHHh----------------HHH
Q psy5702          82 ----------------------------MYGADPSDSAIGGIRPLHDAAEKGCV-EMVRLL----------------PLH  116 (235)
Q Consensus        82 ----------------------------~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~l----------------~l~  116 (235)
                                                  +.|++++..+..|.||||+|+..++. ++++.|                |+|
T Consensus       233 ~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh  312 (682)
T PHA02876        233 NRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLY  312 (682)
T ss_pred             cCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence                                        33445555566666777776666654 344444                666


Q ss_pred             HHHHcC-CHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhc-CCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         117 DAAEKG-CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK-GCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       117 ~a~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                      .|+..| ..++++.|+..|++++..+      ..|.||||.|+.. +..+++.+|+++|++++.+|..|.||||+|+..+
T Consensus       313 ~Aa~~g~~~~~v~~Ll~~gadin~~d------~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~  386 (682)
T PHA02876        313 LMAKNGYDTENIRTLIMLGADVNAAD------RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN  386 (682)
T ss_pred             HHHHhCCCHHHHHHHHHcCCCCCCcc------cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC
Confidence            666666 3566666666666665555      4555555555553 3445555555555555555555555555555555


Q ss_pred             hHHHHHHhhc
Q psy5702         195 TRKLLQYHLA  204 (235)
Q Consensus       195 ~~~~l~~~~~  204 (235)
                      ..++++.++.
T Consensus       387 ~~~iv~~Ll~  396 (682)
T PHA02876        387 NVVIINTLLD  396 (682)
T ss_pred             CHHHHHHHHH
Confidence            5554444443

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=3.7e-29  Score=207.07  Aligned_cols=182  Identities=20%  Similarity=0.193  Sum_probs=111.2

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHh
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLGY--IDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLM   82 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~--~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~   82 (235)
                      .++++.++..+.+++.+|..|+||||+|+..++  .+++++|++. |++++.+|..|.||||+|+..+  +.+++++|+.
T Consensus       153 ~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        153 ERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             hHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc
Confidence            345556666666666666666666666655433  4566666665 5666666666666666666654  5566666653


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCCh-hHHHH---------------------------h----------HHHHHHHcCCH
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCV-EMVRL---------------------------L----------PLHDAAEKGCV  124 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~---------------------------l----------~l~~a~~~~~~  124 (235)
                       |++++.+|..|.||||+|+..++. ++++.                           +          |||+|+..|+.
T Consensus       232 -gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~  310 (446)
T PHA02946        232 -STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSI  310 (446)
T ss_pred             -CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCH
Confidence             666666666666666666655442 22211                           1          56666666666


Q ss_pred             HHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       125 ~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      +++++|+++|.             .++||||+|+..++.+++++|+++|++++.. ..|.||+|+|...+..++++.++.
T Consensus       311 eivk~Ll~~~~-------------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~  376 (446)
T PHA02946        311 RCVKYLLDNDI-------------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLML  376 (446)
T ss_pred             HHHHHHHHCCC-------------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHh
Confidence            66666666543             2456666666666666777777777777664 457777777776666666666555

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=214.29  Aligned_cols=192  Identities=28%  Similarity=0.249  Sum_probs=146.1

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCH-HHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC-CHHHHHHHHhcC
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLGYI-DAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG-WLDIARLLLMYG   84 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~-~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g   84 (235)
                      .+.++.+...+.+++.+|..|.||||+|+..++. ++++.|++. +.+++.+|..|.||||+|+..| +.++++.|+..|
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g  331 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG  331 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence            4556677777778888888888888888888876 466666666 7778888888888888888888 578888888888


Q ss_pred             CCCCCCCCCCCcHHHHHHHhC-ChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKG-CVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~-~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      ++++..+..|.||||+|+..+ ..+++..+                |||+|+..|+.+++++|+++|++++..+      
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~------  405 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS------  405 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC------
Confidence            888888888888888887754 55665555                8888888888888888888888887766      


Q ss_pred             cCCCchHHHHHhcCC-HHHHHHHHHCCCCCCCccccCCChhhhccchh-hHHHHHHhhcc
Q psy5702         148 SLPSRPLHDAAEKGC-VEMVRLLLSYGADPLLASYAGHTPLSITSDET-TRKLLQYHLAD  205 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~-~~~~l~~~~~~  205 (235)
                      ..|.||||+|+..+. ..++++|+++|++++.+|..|+||||+|+..+ ..++++.++..
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            677788888876555 45677888888888888888888888887644 34555554443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.3e-29  Score=208.29  Aligned_cols=220  Identities=19%  Similarity=0.192  Sum_probs=179.8

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC------CHH
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLG--YIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG------WLD   75 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~--~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~------~~~   75 (235)
                      .-..+.++.|++.|.+++.+ ..|.+|||.++..+  +.++++.|++. |+++|.++ .+.||||.|+..+      +.+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            34578999999999999998 67999987766543  68999999998 88998776 6799999998754      468


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHh---CChhHHHHh-----------------HHHHHHHc--CCHHHHHHHHHc
Q psy5702          76 IARLLLMYGADPSDSAIGGIRPLHDAAEK---GCVEMVRLL-----------------PLHDAAEK--GCVEMVRLLLSY  133 (235)
Q Consensus        76 ~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~---~~~~~~~~l-----------------~l~~a~~~--~~~~~~~~l~~~  133 (235)
                      ++++|++.|++++.++..|.||||.|+..   ++.+++++|                 |||.|+..  ++.+++++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            99999999999999999999999988755   577888877                 89988754  689999999999


Q ss_pred             CCCCcc-hhhhhhhccCCCchHHHHHhcC----CHHHHHHHHHCCCCCCC------------------------------
Q psy5702         134 GADPLL-ASYAVYFLSLPSRPLHDAAEKG----CVEMVRLLLSYGADPLL------------------------------  178 (235)
Q Consensus       134 g~~~~~-~~~~~~~~~~~~t~L~~A~~~~----~~~~v~~Ll~~ga~~~~------------------------------  178 (235)
                      |++++. .+      ..|.||||+|+..+    +.+++++|+++|++++.                              
T Consensus       170 Gadi~~~~~------~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        170 GVNLFEKTS------LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             CCCcccccc------ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence            999887 34      68999999998764    89999999998887654                              


Q ss_pred             --------ccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCC
Q psy5702         179 --------ASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       179 --------~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                              +|..|+||||+|+..+..++++.++..  +.+....+..|.+++..+...|+..++
T Consensus       244 ~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~--Gadin~~d~~G~TpL~~A~~~~~~~iv  305 (494)
T PHA02989        244 LKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL--GDDIYNVSKDGDTVLTYAIKHGNIDML  305 (494)
T ss_pred             HhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHH
Confidence                    445699999999988888888887765  334444456677888887777765543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.9e-28  Score=181.09  Aligned_cols=158  Identities=17%  Similarity=0.135  Sum_probs=86.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLMYGADPSDSA-IGGIRPLHDAA  102 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~  102 (235)
                      .+.+|||+|+..++.+.++.|++.    .+..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|.||||+|+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            345555555555555555555543    2334455555555555432  4555555555555555554 24555555544


Q ss_pred             HhC---ChhHHHHh----------------HHHHHHH--cCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHH-HHhc
Q psy5702         103 EKG---CVEMVRLL----------------PLHDAAE--KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHD-AAEK  160 (235)
Q Consensus       103 ~~~---~~~~~~~l----------------~l~~a~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~-A~~~  160 (235)
                      ..+   +.+++++|                |+|.|+.  .++.+++++|+++|++++..+      ..|.||||. |+..
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d------~~g~t~Lh~~a~~~  169 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD------FDNNNILYSYILFH  169 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc------CCCCcHHHHHHHhc
Confidence            321   22222222                2222221  235566666777777766666      566777764 3445


Q ss_pred             CCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       161 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      ++.+++++|+++|++++.+|..|+||+++|...
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            666777777777777777777777777766644

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.8e-28  Score=194.10  Aligned_cols=182  Identities=16%  Similarity=0.078  Sum_probs=128.7

Q ss_pred             hHHHHHHHhhhhceeE------eecCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHH
Q psy5702           6 LGDTVEDVGAEVRSWV------INKHHGETPLHRAAR--LGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIA   77 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~------~~d~~g~~~L~~A~~--~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   77 (235)
                      ..|.+|-+++.+++++      .++..++|+||+++.  .|+.+++++|+++ |++++..  .+.||+|.|+..++.+++
T Consensus        89 ~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~~--~~~t~lh~A~~~~~~eIV  165 (437)
T PHA02795         89 YKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYKI--ECLNAYFRGICKKESSVV  165 (437)
T ss_pred             hHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCCC--CCCCHHHHHHHcCcHHHH
Confidence            4456666666666655      555666666666666  5666666666665 5555542  335666666666666666


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH
Q psy5702          78 RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA  157 (235)
Q Consensus        78 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A  157 (235)
                      ++|++.|++..-   .+.++++.+.        ..-++|.|...+..+++++|+++|++++..+      ..|.||||+|
T Consensus       166 k~Lls~Ga~~~n---~~~~~l~~~~--------~~t~l~~a~~~~~~eIve~LIs~GADIN~kD------~~G~TpLh~A  228 (437)
T PHA02795        166 EFILNCGIPDEN---DVKLDLYKII--------QYTRGFLVDEPTVLEIYKLCIPYIEDINQLD------AGGRTLLYRA  228 (437)
T ss_pred             HHHHhcCCcccc---cccchhhhhh--------ccchhHHHHhcCHHHHHHHHHhCcCCcCcCC------CCCCCHHHHH
Confidence            666666653211   1122322111        1114566777788899999999999999988      8999999999


Q ss_pred             HhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh--------hHHHHHHhhcccc
Q psy5702         158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET--------TRKLLQYHLADVR  207 (235)
Q Consensus       158 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~--------~~~~l~~~~~~~~  207 (235)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+        +.++++.++....
T Consensus       229 a~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        229 IYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999876        4577777665433

>KOG0510|consensus

Probab=99.96  E-value=4.3e-28  Score=201.79  Aligned_cols=220  Identities=26%  Similarity=0.259  Sum_probs=165.5

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh--
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM--   82 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--   82 (235)
                      +..+....++..+.|++..|..|.||||.||..++.|..+.|++. ++++-..|.+|++|+|.|++.|..++++..+.  
T Consensus       132 ~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~-~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~  210 (929)
T KOG0510|consen  132 GNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINK-GADPCKSDIDGNFPIHEAARSGSKECMEIFLPEH  210 (929)
T ss_pred             chHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhc-CCCCCcccCcCCchHHHHHHhcchhhhhhhhccc
Confidence            456778888899999999999999999999999999977888877 77887888889999999999999999998888  


Q ss_pred             ---cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh-------------------------------HHHHHHHcCCHHHHH
Q psy5702          83 ---YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------------------------PLHDAAEKGCVEMVR  128 (235)
Q Consensus        83 ---~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-------------------------------~l~~a~~~~~~~~~~  128 (235)
                         .+..++.-+..+.+|||.|...|++++++.+                               |+|+|++.|..++++
T Consensus       211 g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd  290 (929)
T KOG0510|consen  211 GYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVD  290 (929)
T ss_pred             cchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHH
Confidence               6777888888888999999998888888765                               888888888888888


Q ss_pred             HHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-C-CCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-Y-GADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       129 ~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~-ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      .|+..|++++.+.      ..+.||||.|+.+|..+.++-|++ . ...++..|..|.||||.|+..++.++++.++...
T Consensus       291 ~Ll~~Ga~I~~kn------~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G  364 (929)
T KOG0510|consen  291 NLLGFGASINSKN------KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG  364 (929)
T ss_pred             HHHHcCCcccccC------CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC
Confidence            8888888888777      666777777777777777777776 2 2345556666777777777666666666555443


Q ss_pred             cCCCC-CcccccCCCcccccccccCC
Q psy5702         207 RGHEA-PKWDFAGPASCFDKQMVGYE  231 (235)
Q Consensus       207 ~~~~~-~~~~~~~~~~~~~~~~~g~~  231 (235)
                      ..... ..-+..|.++++.+...|.+
T Consensus       365 A~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  365 ALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             hhhhcccccccCCchhhhHHHHhccH
Confidence            32221 11234444555555544444

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=197.88  Aligned_cols=216  Identities=20%  Similarity=0.194  Sum_probs=172.9

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHHc--CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc-----CCHHHHH
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARL--GYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH-----GWLDIAR   78 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~--~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~   78 (235)
                      ..+.|+.++..+.+...  ..|.++++.+...  ++.+++++|+++ |++++..+..|.||||.|+..     +..++++
T Consensus        17 ~~~~v~~ll~~~~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         17 KLSTVKLLIKSCNPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             cHHHHHHHHhcCChhhh--cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            45678888876554433  4566777645443  479999999998 889999999999999999864     6689999


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHHHHHhC---ChhHHHHh----------------HHHHHHHcCC---HHHHHHHHHcCCC
Q psy5702          79 LLLMYGADPSDSAIGGIRPLHDAAEKG---CVEMVRLL----------------PLHDAAEKGC---VEMVRLLLSYGAD  136 (235)
Q Consensus        79 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~---~~~~~~~l----------------~l~~a~~~~~---~~~~~~l~~~g~~  136 (235)
                      +|++.|++++.++..|.||||+|+..+   +.+++++|                |+|.|+..++   .+++++|+++|++
T Consensus        94 ~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad  173 (489)
T PHA02798         94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD  173 (489)
T ss_pred             HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence            999999999999999999999999875   67888887                9999999987   9999999999999


Q ss_pred             CcchhhhhhhccCCCchHHHHHhcC----CHHHHHHHHHCCCC-------------------------------------
Q psy5702         137 PLLASYAVYFLSLPSRPLHDAAEKG----CVEMVRLLLSYGAD-------------------------------------  175 (235)
Q Consensus       137 ~~~~~~~~~~~~~~~t~L~~A~~~~----~~~~v~~Ll~~ga~-------------------------------------  175 (235)
                      ++..+.     ..|.||||.++..+    +.+++++|+++|++                                     
T Consensus       174 in~~~~-----~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~  248 (489)
T PHA02798        174 INTHNN-----KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY  248 (489)
T ss_pred             cccccC-----cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc
Confidence            987652     46889999987653    68888888887764                                     


Q ss_pred             --CCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCC
Q psy5702         176 --PLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYE  231 (235)
Q Consensus       176 --~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  231 (235)
                        ++.+|..|.||||+|+..+..+++++++..  +.+....+..|.+++..+...|..
T Consensus       249 ~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~--GAdin~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQL--GGDINIITELGNTCLFTAFENESK  304 (489)
T ss_pred             CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc--CCcccccCCCCCcHHHHHHHcCcH
Confidence              445677899999999998888888888765  333444455666777776665543

>KOG0509|consensus

Probab=99.95  E-value=1.1e-27  Score=195.14  Aligned_cols=167  Identities=37%  Similarity=0.429  Sum_probs=151.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCC
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA-IGGIRPLHDAAEKGC  106 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~  106 (235)
                      ...++.|+++|.++.++.+++..+.+++..|.+|.++||+|+.+++.+++++|+++|+++|..+ .-+.||||||++.|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            5678999999999999999998788899999999999999999999999999999999999987 778999999999999


Q ss_pred             hhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHH
Q psy5702         107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL  170 (235)
Q Consensus       107 ~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  170 (235)
                      ..++..|                ++|.|+..++.-.+-+|+.+|++++..|      ..|+|||++|+..|+...+..|+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D------~~grTpLmwAaykg~~~~v~~LL  198 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRD------NNGRTPLMWAAYKGFALFVRRLL  198 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcC------CCCCCHHHHHHHhcccHHHHHHH
Confidence            9999888                8999999999999999999998888888      78999999999999888888888


Q ss_pred             HCCCCCCCcc-ccCCChhhhccchhhHHHHH
Q psy5702         171 SYGADPLLAS-YAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       171 ~~ga~~~~~~-~~g~t~l~~a~~~~~~~~l~  200 (235)
                      ..|+.+..+| ..|.||||+|+..++.+++.
T Consensus       199 ~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  199 KFGASLLLTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             HhcccccccccccCCchHHHHHhcCCcceEe
Confidence            8899988887 78999999998776666665

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=199.56  Aligned_cols=218  Identities=16%  Similarity=0.113  Sum_probs=163.5

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHH--HcCCHHHHHHHHHhCCCCCCCCCC---CC-----------CcHHHHHH
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAA--RLGYIDAVAYCLEKFSHGPAPKDN---AG-----------YTPLHEAA   69 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~--~~~~~~~v~~li~~~~~~~~~~~~---~g-----------~t~L~~A~   69 (235)
                      -.+.++.|++.|++++.+|..|+||||.|+  ..++.+++++|+++ |++++..|.   .|           .||||+|+
T Consensus       115 ~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        115 DVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCccccccccccccccccccccccccHHHHHH
Confidence            468899999999999999999999999654  46899999999998 788775543   33           59999998


Q ss_pred             h-----------cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCh--hHHHHh-------------------HHHH
Q psy5702          70 S-----------HGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV--EMVRLL-------------------PLHD  117 (235)
Q Consensus        70 ~-----------~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~--~~~~~l-------------------~l~~  117 (235)
                      .           .++.+++++|++.|++++.+|..|.||||+|+..++.  ++++.|                   +++.
T Consensus       194 ~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~  273 (661)
T PHA02917        194 ISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIM  273 (661)
T ss_pred             hhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccccchHH
Confidence            6           4588999999999999999999999999999988875  455544                   1222


Q ss_pred             HH----------------------------------------------------------------HcCC--HHHHHHHH
Q psy5702         118 AA----------------------------------------------------------------EKGC--VEMVRLLL  131 (235)
Q Consensus       118 a~----------------------------------------------------------------~~~~--~~~~~~l~  131 (235)
                      |+                                                                ..|.  .+++++|+
T Consensus       274 a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll  353 (661)
T PHA02917        274 ADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECML  353 (661)
T ss_pred             HHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            22                                                                1222  34777788


Q ss_pred             HcCCCCcchhhhhhh------------------------ccCCCchHHHHHhcC-----------------------CHH
Q psy5702         132 SYGADPLLASYAVYF------------------------LSLPSRPLHDAAEKG-----------------------CVE  164 (235)
Q Consensus       132 ~~g~~~~~~~~~~~~------------------------~~~~~t~L~~A~~~~-----------------------~~~  164 (235)
                      ++|++++..+....+                        +..|.||||.|++.+                       ..+
T Consensus       354 ~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (661)
T PHA02917        354 EYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILS  433 (661)
T ss_pred             HcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHH
Confidence            888776654321111                        245999999987543                       356


Q ss_pred             HHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccc
Q psy5702         165 MVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQ  226 (235)
Q Consensus       165 ~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (235)
                      ++++|+++|++++.+|..|+||||+|+..+..++++.++....  +....+..|.+++..+.
T Consensus       434 ~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GA--din~~d~~G~T~L~~A~  493 (661)
T PHA02917        434 TINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGS--DVNIRSNNGYTCIAIAI  493 (661)
T ss_pred             HHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcC--CCCCCCCCCCCHHHHHH
Confidence            7899999999999999999999999998777777766665422  22333445556666555

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=8e-27  Score=194.83  Aligned_cols=215  Identities=13%  Similarity=-0.003  Sum_probs=179.6

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHH-cCCHHHHHHHHHhCCCC------------------------------
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAAR-LGYIDAVAYCLEKFSHG------------------------------   53 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~-~~~~~~v~~li~~~~~~------------------------------   53 (235)
                      .-.|+++.|+++|++++.++..|.+|+|+|+. .++.+++++|++. |++                              
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDD  161 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcccccccchhhhccc
Confidence            45699999999999999999999999999976 6999999999998 543                              


Q ss_pred             ------CCCCCCCCCcHHHHHHhcC-------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC--ChhHHHHh-----
Q psy5702          54 ------PAPKDNAGYTPLHEAASHG-------WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG--CVEMVRLL-----  113 (235)
Q Consensus        54 ------~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~l-----  113 (235)
                            .+.+|..|.||||+|+..+       +.++++.|+++|++++..|..|.||||+|+...  ..++++.|     
T Consensus       162 ~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~  241 (631)
T PHA02792        162 YDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNY  241 (631)
T ss_pred             cccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccc
Confidence                  2346677999999999999       899999999999999999999999999999988  78888887     


Q ss_pred             --------------------------------------------------------------------------------
Q psy5702         114 --------------------------------------------------------------------------------  113 (235)
Q Consensus       114 --------------------------------------------------------------------------------  113 (235)
                                                                                                      
T Consensus       242 ~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        242 SGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             cccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccH
Confidence                                                                                            


Q ss_pred             --------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH---HHHHHH
Q psy5702         114 --------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE---MVRLLL  170 (235)
Q Consensus       114 --------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~---~v~~Ll  170 (235)
                                          .++.|+..|+.+++++|+++|++++..+..    ..+.||||+|......+   ++++|+
T Consensus       322 eiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~----g~~~TpLh~A~~n~~~~v~~IlklLI  397 (631)
T PHA02792        322 NVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN----IINIMPLFPTLSIHESDVLSILKLCK  397 (631)
T ss_pred             HHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC----CCChhHHHHHHHhccHhHHHHHHHHH
Confidence                                577888899999999999999999887721    22579999988776654   578899


Q ss_pred             HCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccc
Q psy5702         171 SYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQ  226 (235)
Q Consensus       171 ~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (235)
                      ++|++++.+|..|.||||+|+..+..++++.++...  .+....+..|.+++..+.
T Consensus       398 s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~G--ADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        398 PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNG--ADINITTKYGSTCIGICV  451 (631)
T ss_pred             hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999888888887777653  333334445555555543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=1.9e-26  Score=204.13  Aligned_cols=163  Identities=26%  Similarity=0.280  Sum_probs=154.9

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      .+..+.++||.|+..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            455678999999999999999999988 8899999999999999999999999999999999999999999999999999


Q ss_pred             HhCChhHHHHh--------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHH
Q psy5702         103 EKGCVEMVRLL--------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL  168 (235)
Q Consensus       103 ~~~~~~~~~~l--------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  168 (235)
                      ..++.+++++|              ++|.|+..|+.++++.|+++|++++..+      ..|+||||+|+..|+.+++++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d------~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED------HQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCcHHHHHH
Confidence            99999999988              7999999999999999999999999988      899999999999999999999


Q ss_pred             HHHCCCCCCCccccC-CChhhhccc
Q psy5702         169 LLSYGADPLLASYAG-HTPLSITSD  192 (235)
Q Consensus       169 Ll~~ga~~~~~~~~g-~t~l~~a~~  192 (235)
                      |+++|++++..|..| .||.+.+..
T Consensus       674 Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999988 899987754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=198.21  Aligned_cols=195  Identities=16%  Similarity=0.133  Sum_probs=159.2

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH----HHHHH
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARL---GYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWL----DIARL   79 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~---~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~   79 (235)
                      .+.+++++.++.+...+|..|+||||+|+..   |+.+++++|++. |++++..+..|.||||+|+..|+.    ++++.
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            4567888889999998899999999998655   889999999997 889999999999999999999985    45678


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHH--HHcCCHHHHHHHHHcCCCCcchh
Q psy5702          80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDA--AEKGCVEMVRLLLSYGADPLLAS  141 (235)
Q Consensus        80 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a--~~~~~~~~~~~l~~~g~~~~~~~  141 (235)
                      |++.+...+..+.  .+++++|+..++.+++++|                ||+.+  ...|+.+++++|+++|++++..+
T Consensus        91 Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917         91 LLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             HHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            8876544444442  3567778888999999998                78854  45789999999999999997654


Q ss_pred             hhh--------hhccCCCchHHHHHh-----------cCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhH--HHHH
Q psy5702         142 YAV--------YFLSLPSRPLHDAAE-----------KGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTR--KLLQ  200 (235)
Q Consensus       142 ~~~--------~~~~~~~t~L~~A~~-----------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~--~~l~  200 (235)
                      ...        +....+.||||+|+.           .++.+++++|+++|++++.+|..|.||||+|+..+..  ++++
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence            110        112345799999986           4688999999999999999999999999999987764  6888


Q ss_pred             Hhhc
Q psy5702         201 YHLA  204 (235)
Q Consensus       201 ~~~~  204 (235)
                      .+..
T Consensus       249 ~Li~  252 (661)
T PHA02917        249 LLMK  252 (661)
T ss_pred             HHHh
Confidence            7754

>KOG0508|consensus

Probab=99.94  E-value=3.2e-27  Score=186.17  Aligned_cols=176  Identities=35%  Similarity=0.461  Sum_probs=134.8

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC--------CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCC
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--------KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIG   93 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~--------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   93 (235)
                      -.+.+|.|||.+|+++|+.+++++|+++++..+..        ....|.+||-.|+..|+.++|+.|++.|+++|....-
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~T  116 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRT  116 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccccccc
Confidence            35568889999999999999999999987766542        3367899999999999999999999999999998888


Q ss_pred             CCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH
Q psy5702          94 GIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA  157 (235)
Q Consensus        94 g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A  157 (235)
                      ..|||..|+.-|+.+++++|                .|++|+.+|+.+++++|++.|+++|.++      ..|+|+||.+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks------~kGNTALH~c  190 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKS------YKGNTALHDC  190 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhc------ccCchHHHhh
Confidence            88999998888888777766                5666666666666666666666666666      5666666666


Q ss_pred             HhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       158 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      +..|+.+++++|+.+|+.++. |..|.|||..|+..+..+++..++.
T Consensus       191 aEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            666666666666666666653 3446666666666666666666654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.4e-25  Score=187.84  Aligned_cols=195  Identities=13%  Similarity=0.084  Sum_probs=156.1

Q ss_pred             HHHHHhhhhceeE-eecCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHh
Q psy5702           9 TVEDVGAEVRSWV-INKHHGETPLHRAARLG---YIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLM   82 (235)
Q Consensus         9 ~~~~~~~~~~~~~-~~d~~g~~~L~~A~~~~---~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~   82 (235)
                      .++..+.+-.+++ .+|..|+||||+|+..+   +.+++++|+++ |++++.+|..|.||||+|+..+  +.+++++|++
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~  100 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS  100 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence            3444555555666 78899999999999997   59999999988 9999999999999999999976  7999999999


Q ss_pred             cCCCC--CCCCCCCCcHHHHHHH--hCChhHHHHh----------------------HHHHHHHcCCHHHHHHHHHcCCC
Q psy5702          83 YGADP--SDSAIGGIRPLHDAAE--KGCVEMVRLL----------------------PLHDAAEKGCVEMVRLLLSYGAD  136 (235)
Q Consensus        83 ~g~~~--~~~~~~g~t~l~~a~~--~~~~~~~~~l----------------------~l~~a~~~~~~~~~~~l~~~g~~  136 (235)
                      .|++.  +..+.-+.+|++.++.  .++.+++++|                      |++.+...++.+++++|+++|++
T Consensus       101 ~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        101 SYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             cCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence            96654  6667668889998887  7788877776                      66777888999999999999999


Q ss_pred             Ccchhh--hhhhccCCCchHHHHH------hcCCHHHHHHHHHCCCCCCCccccCCChhhh--ccchhhHHHHHHhhc
Q psy5702         137 PLLASY--AVYFLSLPSRPLHDAA------EKGCVEMVRLLLSYGADPLLASYAGHTPLSI--TSDETTRKLLQYHLA  204 (235)
Q Consensus       137 ~~~~~~--~~~~~~~~~t~L~~A~------~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~--a~~~~~~~~l~~~~~  204 (235)
                      ++--.+  .......+.|.||.++      .++..+++++|+++||+++.+|..|+||||+  +...++.++++.++.
T Consensus       181 v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        181 STGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             ccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            851110  0111245556666443      4568899999999999999999999999995  545566899998887

>KOG4177|consensus

Probab=99.94  E-value=7.7e-27  Score=204.18  Aligned_cols=195  Identities=38%  Similarity=0.525  Sum_probs=125.2

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC-CHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG-WLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~   82 (235)
                      .+..+.++.++..+.+.+.+...|.||||.|+..++.++++.+++. +...+..+..|.||+|+|+..+ ..+....+++
T Consensus       384 ~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~  462 (1143)
T KOG4177|consen  384 SGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ  462 (1143)
T ss_pred             cCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEecc-CCChhhHhhcCCChhhhhhhcccHhhhhhhHhh
Confidence            4455667777777777777777777777777777777777777766 6777777777777777777777 6666677777


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhh
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      .|++++...+.|.||||.|...|+.+++..+                ++|.+...+...+++.++++|++++...     
T Consensus       463 ~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~-----  537 (1143)
T KOG4177|consen  463 YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRT-----  537 (1143)
T ss_pred             cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhc-----
Confidence            7777777777777777777777777776665                4555555555555555555555555444     


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                       ..+.||||.|+.+|+..+|++|+++|+|++.+++.|+||||.|+..+..+++..+...
T Consensus       538 -~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  538 -GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             -ccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence             4455555555555555555555555555555555555555555554444444444433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.8e-25  Score=184.74  Aligned_cols=194  Identities=20%  Similarity=0.181  Sum_probs=157.4

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHH--HHHcCCHHHHHHHHH--------------------------------h
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHR--AARLGYIDAVAYCLE--------------------------------K   49 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~--A~~~~~~~~v~~li~--------------------------------~   49 (235)
                      +...|.++.|++.|++++.+|..|.||||+  |+..++.++++.|++                                +
T Consensus       212 ~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (672)
T PHA02730        212 SLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY  291 (672)
T ss_pred             ccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC
Confidence            346799999999999999999999999996  445567999999999                                2


Q ss_pred             CCCCCCC--------------------CCCCCCc---------------------HHHHHHhcC---CHHHHHHHHhcCC
Q psy5702          50 FSHGPAP--------------------KDNAGYT---------------------PLHEAASHG---WLDIARLLLMYGA   85 (235)
Q Consensus        50 ~~~~~~~--------------------~~~~g~t---------------------~L~~A~~~~---~~~~v~~Ll~~g~   85 (235)
                       +.+...                    .+..|.+                     .|+.-++.+   +.+++++|+++|+
T Consensus       292 -~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GA  370 (672)
T PHA02730        292 -NVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGA  370 (672)
T ss_pred             -CcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCC
Confidence             444433                    4556654                     667777755   5799999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCC----hhHHHHh------------------HHHH---HHHcC---------CHHHHHHHH
Q psy5702          86 DPSDSAIGGIRPLHDAAEKGC----VEMVRLL------------------PLHD---AAEKG---------CVEMVRLLL  131 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~~----~~~~~~l------------------~l~~---a~~~~---------~~~~~~~l~  131 (235)
                      +++.. ..|.||||+|+..++    .+++++|                  |+|.   +...+         ..+++++|+
T Consensus       371 dIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        371 TMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            99985 789999999888774    7888888                  6652   33222         235689999


Q ss_pred             HcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccc-cCCChhhhccch--hhHHHHHHhhcc
Q psy5702         132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY-AGHTPLSITSDE--TTRKLLQYHLAD  205 (235)
Q Consensus       132 ~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~~--~~~~~l~~~~~~  205 (235)
                      ++|++++..+      ..|.||||+|+..++.+++++|+++||+++.+|. .|.||+|+|+..  +..++++.++..
T Consensus       450 s~GADINakD------~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        450 KYMDDIDMID------NENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             hcccchhccC------CCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            9999999998      8999999999999999999999999999999997 599999999863  456666665544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.2e-24  Score=172.07  Aligned_cols=153  Identities=19%  Similarity=0.080  Sum_probs=131.9

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-----CCCCcHHHHHHhcCCHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKD-----NAGYTPLHEAASHGWLDIARL   79 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~   79 (235)
                      +-.+.++.|+.+|++++.+  ++.||+|.|+..++.+++++|++++....+..+     ..+.+++|.|...++.+++++
T Consensus       129 n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~  206 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKL  206 (437)
T ss_pred             CCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHH
Confidence            5678999999999999875  458999999999999999999999433333321     347899999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHh
Q psy5702          80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE  159 (235)
Q Consensus        80 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~  159 (235)
                      |++.|++++.++..|.||||+|+..|                 +.+++++|+++|++++..+      ..|.||||+|+.
T Consensus       207 LIs~GADIN~kD~~G~TpLh~Aa~~g-----------------~~eiVelLL~~GAdIN~~d------~~G~TpLh~Aa~  263 (437)
T PHA02795        207 CIPYIEDINQLDAGGRTLLYRAIYAG-----------------YIDLVSWLLENGANVNAVM------SNGYTCLDVAVD  263 (437)
T ss_pred             HHhCcCCcCcCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHH
Confidence            99999999999999999999987765                 4566788899999999998      899999999999


Q ss_pred             cCC--------HHHHHHHHHCCCCCCCcccc
Q psy5702         160 KGC--------VEMVRLLLSYGADPLLASYA  182 (235)
Q Consensus       160 ~~~--------~~~v~~Ll~~ga~~~~~~~~  182 (235)
                      .|+        .+++++|+++|++++.....
T Consensus       264 ~g~~~~~~~~~~eIvelLL~~gadI~~~~~~  294 (437)
T PHA02795        264 RGSVIARRETHLKILEILLREPLSIDCIKLA  294 (437)
T ss_pred             cCCcccccccHHHHHHHHHhCCCCCCchhHH
Confidence            984        68999999999999876543

>KOG0508|consensus

Probab=99.92  E-value=1.1e-24  Score=171.92  Aligned_cols=161  Identities=31%  Similarity=0.387  Sum_probs=138.7

Q ss_pred             cchHHHHHHHhhh-hc--------eeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH
Q psy5702           4 QSLGDTVEDVGAE-VR--------SWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWL   74 (235)
Q Consensus         4 ~~~~~~~~~~~~~-~~--------~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~   74 (235)
                      .+-.+++|.++.. ++        .|.-..-.|.+||-.|+..|+.++|+.|+++ ++++|.......|||.-||.-|+.
T Consensus        52 nGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNStPLraACfDG~l  130 (615)
T KOG0508|consen   52 NGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNSTPLRAACFDGHL  130 (615)
T ss_pred             cCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCccHHHHHhcchh
Confidence            3445667777662 21        2222334788899999999999999999998 688888878888999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCc
Q psy5702          75 DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPL  138 (235)
Q Consensus        75 ~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~  138 (235)
                      +++++|+++|+|+++.+..|.|.|++|+..|+.+++++|                .||.|++.|+.+++++|+.+|+.++
T Consensus       131 eivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~  210 (615)
T KOG0508|consen  131 EIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID  210 (615)
T ss_pred             HHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee
Confidence            999999999999999999999999999999999999988                8999999999999999999999877


Q ss_pred             chhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC
Q psy5702         139 LASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY  172 (235)
Q Consensus       139 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~  172 (235)
                      ...       .|.|||..|...|+.+++++|++.
T Consensus       211 ~d~-------~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  211 VDG-------HGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             ecC-------CCCchHHHHhhhcchHHHHHHhcC
Confidence            654       699999999999999999999973

>KOG4177|consensus

Probab=99.92  E-value=3.6e-25  Score=193.79  Aligned_cols=194  Identities=33%  Similarity=0.447  Sum_probs=174.6

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLG-YIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~-~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      ...++++.++..+.+.+.++..|+|++|+|+..| ..+....+ .+++.+.+.....|.||||+|++.|+.++++.+++.
T Consensus       418 ~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l-~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~  496 (1143)
T KOG4177|consen  418 GNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLL-LQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG  496 (1143)
T ss_pred             cCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhH-hhcCCCcchhccccCcchhhhhccCCchHHHHhhhc
Confidence            3456677788889999999999999999999999 55555544 445999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      ++..+...+.+.+++|.+...+...+++.+                |||.|+..|+..++++|+++|++++..+      
T Consensus       497 ~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~------  570 (1143)
T KOG4177|consen  497 GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD------  570 (1143)
T ss_pred             CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC------
Confidence            999999999999999999998888887766                9999999999999999999999999999      


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +.|+||||.|+..|+.+++.+|+++||++|..|.+|.|||++|...+..++.+.+...
T Consensus       571 ~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  571 KLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             CCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            8999999999999999999999999999999999999999999988777766665443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=7.9e-24  Score=153.20  Aligned_cols=146  Identities=21%  Similarity=0.105  Sum_probs=124.1

Q ss_pred             hhhceeEeecCCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHH---HHHHHHhcCCCC
Q psy5702          15 AEVRSWVINKHHGETPLHRAARLGYI----DAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD---IARLLLMYGADP   87 (235)
Q Consensus        15 ~~~~~~~~~d~~g~~~L~~A~~~~~~----~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~g~~~   87 (235)
                      .++.+++..+..+.++||.||+.|+.    +++++|++. +..++..|..|.||||+|+..|+.+   ++++|++.|+++
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            35566677788899999999999998    455556665 7778888999999999999998765   489999999999


Q ss_pred             CCCC-CCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH-cCCCCcchhhhhhhccCCCchHHHHHhcCCHHH
Q psy5702          88 SDSA-IGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS-YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM  165 (235)
Q Consensus        88 ~~~~-~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  165 (235)
                      +.++ ..|.||||+|+..++.                 +++++|+. .|++++..+      ..|.||||+|+..++.++
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~-----------------~iv~~Ll~~~gad~~~~d------~~g~tpL~~A~~~~~~~i  143 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNY-----------------ELAEWLCRQLGVNLGAIN------YQHETAYHIAYKMRDRRM  143 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCH-----------------HHHHHHHhccCCCccCcC------CCCCCHHHHHHHcCCHHH
Confidence            9998 5899999998876544                 55677784 799998887      799999999999999999


Q ss_pred             HHHHHHCCCCCCCccccCC
Q psy5702         166 VRLLLSYGADPLLASYAGH  184 (235)
Q Consensus       166 v~~Ll~~ga~~~~~~~~g~  184 (235)
                      +++|+++|++++.++..|.
T Consensus       144 v~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        144 MEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHcCCCCCCcccCCc
Confidence            9999999999999888774

>KOG0514|consensus

Probab=99.91  E-value=2.9e-24  Score=164.55  Aligned_cols=161  Identities=32%  Similarity=0.357  Sum_probs=139.3

Q ss_pred             eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc-----CCHHHHHHHHhcCCCCCCCC-CC
Q psy5702          20 WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH-----GWLDIARLLLMYGADPSDSA-IG   93 (235)
Q Consensus        20 ~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~g~~~~~~~-~~   93 (235)
                      +|+-|.+|.|+||||+.++++++|+.|++..-++++.++..|.||+++++..     .+.++|..|.+.| ++|.+. ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5678999999999999999999999999998899999999999999998863     3567888888876 666654 35


Q ss_pred             CCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC-
Q psy5702          94 GIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-  172 (235)
Q Consensus        94 g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-  172 (235)
                      |.|+|++|..+|+.                 ++++.|+..|+++|+++      .+|.|+|.+|+.+|+.+++++|+.. 
T Consensus       340 gQTALMLAVSHGr~-----------------d~vk~LLacgAdVNiQD------dDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  340 GQTALMLAVSHGRV-----------------DMVKALLACGADVNIQD------DDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             cchhhhhhhhcCcH-----------------HHHHHHHHccCCCcccc------CCccHHHhhhhhhChHHHHHHHhccC
Confidence            88999888777655                 55677899999999999      8999999999999999999999985 


Q ss_pred             CCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         173 GADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       173 ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ++|+..+|.+|-|+|.+|.+.++.+|-..+-+
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            89999999999999999999888776554433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=8.3e-23  Score=153.25  Aligned_cols=148  Identities=15%  Similarity=0.074  Sum_probs=128.0

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhc---CCHHHH
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLG--YIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASH---GWLDIA   77 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~--~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~---~~~~~v   77 (235)
                      .+..+.++.++..   ++..|..|.||||+|+..+  +.+++++|++. +++++.++ ..|.||||+|+..   ++.+++
T Consensus        31 ~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv  106 (209)
T PHA02859         31 KDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEIL  106 (209)
T ss_pred             hCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHH
Confidence            3456777877765   4558899999999999854  89999999998 88899887 5899999998864   478999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHh--CChhHHHHh----------------HHHH-HHHcCCHHHHHHHHHcCCCCc
Q psy5702          78 RLLLMYGADPSDSAIGGIRPLHDAAEK--GCVEMVRLL----------------PLHD-AAEKGCVEMVRLLLSYGADPL  138 (235)
Q Consensus        78 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~--~~~~~~~~l----------------~l~~-a~~~~~~~~~~~l~~~g~~~~  138 (235)
                      ++|++.|++++.+|..|.||||+|+..  ++.+++++|                |+|. +...++.+++++|+++|++++
T Consensus       107 ~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        107 KILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999998763  578999988                8985 567889999999999999999


Q ss_pred             chhhhhhhccCCCchHHHHHhcC
Q psy5702         139 LASYAVYFLSLPSRPLHDAAEKG  161 (235)
Q Consensus       139 ~~~~~~~~~~~~~t~L~~A~~~~  161 (235)
                      ..+      ..|.|||++|...+
T Consensus       187 ~~d------~~g~tpl~la~~~~  203 (209)
T PHA02859        187 ETN------KSGYNCYDLIKFRN  203 (209)
T ss_pred             CCC------CCCCCHHHHHhhhh
Confidence            888      89999999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.2e-22  Score=147.66  Aligned_cols=146  Identities=25%  Similarity=0.280  Sum_probs=108.6

Q ss_pred             CCccchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHhcCC--
Q psy5702           1 MTTQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKF-----SHGPAPKDNAGYTPLHEAASHGW--   73 (235)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~-----~~~~~~~~~~g~t~L~~A~~~~~--   73 (235)
                      |+.+.-...++.+      +..+|..|.||||+|++.|+.++++.|+...     +..++.+|..|.||||+|+..|+  
T Consensus         1 ~~~~~~~~~~~~~------~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~   74 (169)
T PHA02741          1 MESPHFMTCLEEM------IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQ   74 (169)
T ss_pred             CCchhHHHHHHHH------hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChH
Confidence            4444445555554      3357788899999999999998888876432     45677888888888888888887  


Q ss_pred             --HHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH-cCCCCcchhhhhhhccC
Q psy5702          74 --LDIARLLLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS-YGADPLLASYAVYFLSL  149 (235)
Q Consensus        74 --~~~v~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~  149 (235)
                        .+++++|++.|++++.++. .|.||||+|+..++.                 +++++|+. .|++++..+      ..
T Consensus        75 ~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~-----------------~iv~~Ll~~~g~~~~~~n------~~  131 (169)
T PHA02741         75 LAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDH-----------------DLAEWLCCQPGIDLHFCN------AD  131 (169)
T ss_pred             HHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCH-----------------HHHHHHHhCCCCCCCcCC------CC
Confidence              4778888888888888774 788888887766544                 45566676 477777776      67


Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      |.||||.|+..++.+++++|++.++.
T Consensus       132 g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        132 NKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888888888876544

>KOG0505|consensus

Probab=99.89  E-value=6.3e-23  Score=164.34  Aligned_cols=183  Identities=30%  Similarity=0.372  Sum_probs=154.1

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      ++..+-++.++..+++.+..+.+|.|+||.||...+.++|++|++. +.++|.+|..|+||||.|+.+|+..++++|++.
T Consensus        50 ~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~  128 (527)
T KOG0505|consen   50 RGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQH  128 (527)
T ss_pred             cccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHh
Confidence            4566778889999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh------------------------------------------HHHHHHHc
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------------------------PLHDAAEK  121 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l------------------------------------------~l~~a~~~  121 (235)
                      |+++...+..|..|+..+......+++..-                                          .+|.|..+
T Consensus       129 gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~  208 (527)
T KOG0505|consen  129 GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAAN  208 (527)
T ss_pred             hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhh
Confidence            999877777666665443322222221111                                          68888888


Q ss_pred             CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       122 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      |..++..+|+.+|.+++..+      ..|+||||-|+-.|..+++++|+++|++.+.++..|.||+++|.+.
T Consensus       209 Gy~e~~~lLl~ag~~~~~~D------~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  209 GYTEVAALLLQAGYSVNIKD------YDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hHHHHHHHHHHhccCccccc------ccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            88888888888888888888      7888888888888888888888888888888888888888888763

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.9e-21  Score=162.83  Aligned_cols=176  Identities=19%  Similarity=0.128  Sum_probs=131.5

Q ss_pred             eecCCCCcHHHHHHHcC-------CHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHh----------
Q psy5702          22 INKHHGETPLHRAARLG-------YIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHG--WLDIARLLLM----------   82 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~-------~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~----------   82 (235)
                      .+|..|.||||+|+..+       +.++++.||++ ++.++..|..|.||||+|+...  +.+++++|++          
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~  248 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN  248 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence            56666777777777777       67777777777 6777777777777777777655  4444444443          


Q ss_pred             --------------------------------------------------------------------------------
Q psy5702          83 --------------------------------------------------------------------------------   82 (235)
Q Consensus        83 --------------------------------------------------------------------------------   82 (235)
                                                                                                      
T Consensus       249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI  328 (631)
T PHA02792        249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI  328 (631)
T ss_pred             HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence                                                                                            


Q ss_pred             -cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh------------------HHHHHHHcCCH---HHHHHHHHcCCCCcch
Q psy5702          83 -YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------PLHDAAEKGCV---EMVRLLLSYGADPLLA  140 (235)
Q Consensus        83 -~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l------------------~l~~a~~~~~~---~~~~~l~~~g~~~~~~  140 (235)
                       .|++...  .....+++.|+..++.+++++|                  |+|.|......   ++++.|+++|++++..
T Consensus       329 d~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~k  406 (631)
T PHA02792        329 DEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKI  406 (631)
T ss_pred             HCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccc
Confidence             3333221  1133457778888889999888                  67777666554   4578889999999998


Q ss_pred             hhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccc----------hhhHHHHHHhhccc
Q psy5702         141 SYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----------ETTRKLLQYHLADV  206 (235)
Q Consensus       141 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~----------~~~~~~l~~~~~~~  206 (235)
                      +      ..|.||||.|+..++.+++++|+++|++++.+|..|.||+++|..          ....++++.++...
T Consensus       407 D------~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        407 D------KHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             c------ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            8      899999999999999999999999999999999999999999864          22345555555554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.4e-22  Score=178.49  Aligned_cols=188  Identities=27%  Similarity=0.235  Sum_probs=98.8

Q ss_pred             hHHHHHHHhhh--hceeEeecCCCCcHHH-HHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc--CCH-HHHHH
Q psy5702           6 LGDTVEDVGAE--VRSWVINKHHGETPLH-RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH--GWL-DIARL   79 (235)
Q Consensus         6 ~~~~~~~~~~~--~~~~~~~d~~g~~~L~-~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~--~~~-~~v~~   79 (235)
                      ..+.++.++.+  +.+++..|..|+|||| .|+..++.++++.|++. +.    .+..|.||||.|+..  +.. .++..
T Consensus        29 ~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~  103 (743)
T TIGR00870        29 DLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAVGDTLLHAISLEYVDAVEAILLH  103 (743)
T ss_pred             CHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCcChHHHHHHHhccHHHHHHHHHH
Confidence            34555666666  6666666777777777 66666666666666655 32    455666777766652  111 22333


Q ss_pred             HHhcCCC------CC----CCCCCCCcHHHHHHHhCChhHHHHh------------------------------HHHHHH
Q psy5702          80 LLMYGAD------PS----DSAIGGIRPLHDAAEKGCVEMVRLL------------------------------PLHDAA  119 (235)
Q Consensus        80 Ll~~g~~------~~----~~~~~g~t~l~~a~~~~~~~~~~~l------------------------------~l~~a~  119 (235)
                      +...+.+      .+    .....|.||||+|+..++.++++.|                              |++.|+
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa  183 (743)
T TIGR00870       104 LLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA  183 (743)
T ss_pred             HhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH
Confidence            3332211      00    1123466666666666666555554                              455555


Q ss_pred             HcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcC---------CHHHHHHHHHCCCCC-------CCccccC
Q psy5702         120 EKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG---------CVEMVRLLLSYGADP-------LLASYAG  183 (235)
Q Consensus       120 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-------~~~~~~g  183 (235)
                      ..|+.+++++|+++|++++..+      ..|+||||+|+..+         ...+.+++++.+++.       ++.|..|
T Consensus       184 ~~~~~~iv~lLl~~gadin~~d------~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g  257 (743)
T TIGR00870       184 CLGSPSIVALLSEDPADILTAD------SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQG  257 (743)
T ss_pred             HhCCHHHHHHHhcCCcchhhHh------hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCC
Confidence            5555555555555555555554      45555555555554         122334444433332       3445555


Q ss_pred             CChhhhccchhhHHHHHHhhc
Q psy5702         184 HTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       184 ~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      .||||+|+..+..++++.+++
T Consensus       258 ~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       258 LTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             CCchhhhhhcCCccHHHHHHH
Confidence            555555555555555555444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=2.7e-22  Score=176.75  Aligned_cols=205  Identities=24%  Similarity=0.174  Sum_probs=159.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-CCCCCCCCCCCCCcHHH-HHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEK-FSHGPAPKDNAGYTPLH-EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~-~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  103 (235)
                      .+..+++.|++.|+.+.++.+++. .+.++|..|..|.|||| .|+..++.++++.|++.|+    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            557899999999999999999976 24667888999999999 8888999999999999987    56789999999987


Q ss_pred             hCCh---hHHHH--------------------------hHHHHHHHcCCHHHHHHHHHcCCCCcchhhhh--------hh
Q psy5702         104 KGCV---EMVRL--------------------------LPLHDAAEKGCVEMVRLLLSYGADPLLASYAV--------YF  146 (235)
Q Consensus       104 ~~~~---~~~~~--------------------------l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~--------~~  146 (235)
                      .+..   .++..                          .|+|.|+..|+.++++.|+++|++++....+.        ..
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            3211   11111                          18999999999999999999999998653211        11


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh------------hHHHHHHhhccccCCCC--C
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET------------TRKLLQYHLADVRGHEA--P  212 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~------------~~~~l~~~~~~~~~~~~--~  212 (235)
                      ...|.||||.|+..++.+++++|+++|+|++.+|..|.||||+|+..+            ..+.+..+++.......  .
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence            146899999999999999999999999999999999999999998764            33444455555432211  1


Q ss_pred             cccccCCCcccccccccCCCCC
Q psy5702         213 KWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                      ..+..|.+++..+...|..+++
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHH
Confidence            2344566777777777776654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=6.2e-22  Score=143.90  Aligned_cols=134  Identities=25%  Similarity=0.257  Sum_probs=115.9

Q ss_pred             CCCCCCCCcHHHHHHhcCCHHHHHHHHh------cCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHH
Q psy5702          55 APKDNAGYTPLHEAASHGWLDIARLLLM------YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVR  128 (235)
Q Consensus        55 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~  128 (235)
                      +.++..|.||||+|++.|+.++++.|+.      .|++++.+|..|.||||+|+..++.+++             .++++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-------------~~ii~   81 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-------------AEIID   81 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-------------HHHHH
Confidence            3467889999999999999999999864      3688999999999999999988775432             36688


Q ss_pred             HHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       129 ~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      +|+++|++++..+.     ..|+||||+|++.++.+++++|+. .|++++.+|..|.||||+|...+..++++.+....
T Consensus        82 ~Ll~~gadin~~~~-----~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         82 HLIELGADINAQEM-----LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             HHHHcCCCCCCCCc-----CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999987761     279999999999999999999997 59999999999999999999988888887776553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=9.7e-22  Score=142.28  Aligned_cols=143  Identities=19%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHH
Q psy5702          51 SHGPAPKDNAGYTPLHEAASHGWL----DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEM  126 (235)
Q Consensus        51 ~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~  126 (235)
                      +.+++..+..+.+++|.|++.|+.    +++++|++.|++++..|..|.||||+|+..++.+.+              ++
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~--------------~~   75 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAV--------------MK   75 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHH--------------HH
Confidence            344455677888999999999998    667778889999999999999999999988776543              34


Q ss_pred             HHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       127 ~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +++|+++|++++..+.     ..|.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..+..++++.+...
T Consensus        76 i~~Ll~~Gadin~~d~-----~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         76 IELLVNMGADINAREL-----GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             HHHHHHcCCCCCCCCC-----CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            6889999999998762     379999999999999999999995 8999999999999999999988777777776655


Q ss_pred             ccCCCCC
Q psy5702         206 VRGHEAP  212 (235)
Q Consensus       206 ~~~~~~~  212 (235)
                      ....+.+
T Consensus       151 ga~~~~~  157 (166)
T PHA02743        151 GAVCDDP  157 (166)
T ss_pred             CCCCCCc
Confidence            4333333

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=140.32  Aligned_cols=135  Identities=21%  Similarity=0.185  Sum_probs=105.5

Q ss_pred             EeecCCCCcHHHHHHHcCCHHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHhcCCH---HHHHHHHhcCCCCCCCC-C
Q psy5702          21 VINKHHGETPLHRAARLGYIDAVAYCLEKF----SHGPAPKDNAGYTPLHEAASHGWL---DIARLLLMYGADPSDSA-I   92 (235)
Q Consensus        21 ~~~d~~g~~~L~~A~~~~~~~~v~~li~~~----~~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~~~-~   92 (235)
                      ..+|..|.||||+|++.|+...+.......    +...+..|..|.||||+|+..++.   +++++|++.|++++.++ .
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            346788999999999999843222111110    111234578899999999999886   46889999999999998 5


Q ss_pred             CCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH-cCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH
Q psy5702          93 GGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS-YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS  171 (235)
Q Consensus        93 ~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  171 (235)
                      .|.||||+|+..++                 .+++++|+. .|++++..+      ..|.||||+|+..++.+++++|++
T Consensus        91 ~g~T~Lh~A~~~~~-----------------~~i~~~Ll~~~g~d~n~~~------~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         91 FGNTPLHIAVYTQN-----------------YELATWLCNQPGVNMEILN------YAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             CCCcHHHHHHHhCC-----------------HHHHHHHHhCCCCCCcccc------CCCCCHHHHHHHcCCHHHHHHHHH
Confidence            89999999887654                 455677787 488888887      789999999999999999999999


Q ss_pred             CCCCCCC
Q psy5702         172 YGADPLL  178 (235)
Q Consensus       172 ~ga~~~~  178 (235)
                      +|++.++
T Consensus       148 ~ga~~~~  154 (154)
T PHA02736        148 KGAQCKV  154 (154)
T ss_pred             cCCCCCC
Confidence            9988753

>KOG0502|consensus

Probab=99.87  E-value=4.6e-22  Score=142.92  Aligned_cols=169  Identities=26%  Similarity=0.263  Sum_probs=108.9

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      .|+.|+.+++.++-++++..+..++.+ +...|..+.-+.+|+.+++..-+.+.+..+.++  .+|..|+.|+|||.||+
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAA  168 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHH
Confidence            334444445444444444444444444 333444444444444444444433333322222  23344444444444444


Q ss_pred             HhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHH
Q psy5702         103 EKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV  166 (235)
Q Consensus       103 ~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v  166 (235)
                      ..|+++++++|                .|.+|++.|..+++++|+.++.++|.-+      -.|-|||-+|++-++.+++
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD------wNGgTpLlyAvrgnhvkcv  242 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD------WNGGTPLLYAVRGNHVKCV  242 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec------cCCCceeeeeecCChHHHH
Confidence            44444444444                4455666677788899999999999988      5789999999999999999


Q ss_pred             HHHHHCCCCCCCccccCCChhhhccchhhHHHHHH
Q psy5702         167 RLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY  201 (235)
Q Consensus       167 ~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~  201 (235)
                      +.|+..||+++..+..|.++++.|...+.. +++.
T Consensus       243 e~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqq  276 (296)
T KOG0502|consen  243 ESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQ  276 (296)
T ss_pred             HHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHH
Confidence            999999999999999999999999987655 4443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=146.78  Aligned_cols=154  Identities=24%  Similarity=0.271  Sum_probs=124.1

Q ss_pred             eecCCCCcH-HHHHHHcCCHHHHHHHHHhCCCCCCCC----CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC-CCCCC
Q psy5702          22 INKHHGETP-LHRAARLGYIDAVAYCLEKFSHGPAPK----DNAGYTPLHEAASHGWLDIARLLLMYGADPSDS-AIGGI   95 (235)
Q Consensus        22 ~~d~~g~~~-L~~A~~~~~~~~v~~li~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~   95 (235)
                      .+|..|.++ ||.|++.++.+++++|+++ |++++.+    +..|.||||+|+..++.+++++|++.|++++.+ +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            477888775 6777778999999999998 8888876    458999999999999999999999999999986 46799


Q ss_pred             cHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702          96 RPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus        96 t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      ||||.|+..+                 +.+++++|+.+|++++..+      ..|.||||.|+..++..++..+.  |..
T Consensus       106 TpLh~Aa~~~-----------------~~eivklLL~~GAdin~kd------~~G~TpL~~A~~~~~~~~~~~~~--~~~  160 (300)
T PHA02884        106 TPLYISVLHG-----------------CLKCLEILLSYGADINIQT------NDMVTPIELALMICNNFLAFMIC--DNE  160 (300)
T ss_pred             CHHHHHHHcC-----------------CHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHhCChhHHHHhc--CCc
Confidence            9999977664                 4566788899999999988      78999999999988888775554  332


Q ss_pred             CCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         176 PLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       176 ~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                         .+..+.+|.+++...+..+++...+.
T Consensus       161 ---~~~~~~~~~~~~~n~ei~~~Lish~v  186 (300)
T PHA02884        161 ---ISNFYKHPKKILINFDILKILVSHFI  186 (300)
T ss_pred             ---ccccccChhhhhccHHHHHHHHHHHH
Confidence               35567788887765455555555444

>KOG0507|consensus

Probab=99.86  E-value=1.4e-21  Score=162.21  Aligned_cols=179  Identities=32%  Similarity=0.341  Sum_probs=154.1

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA   85 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   85 (235)
                      -.+.++.+++......+.|..|..|||+|+..|+.+.++.++.+ ....|.....|.+|||.|++.|+.+++.+|++.|+
T Consensus        61 ~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~a  139 (854)
T KOG0507|consen   61 QNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNA  139 (854)
T ss_pred             chHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhhhhcchHHHHHHHhcCC
Confidence            45667778888888888888888888888888888888888887 57788888889999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCChhHHHHh------------------------HHHHHHHcCCHHHHHHHHHcCCCCcchh
Q psy5702          86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------PLHDAAEKGCVEMVRLLLSYGADPLLAS  141 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l------------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~  141 (235)
                      ++..++..+.|++..|++.|..+++..+                        |+|.|..+|+.++++.|++.|.++|...
T Consensus       140 dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t  219 (854)
T KOG0507|consen  140 DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT  219 (854)
T ss_pred             CccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc
Confidence            9988888889999999998888888776                        7899999999999999999999888776


Q ss_pred             hhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccc
Q psy5702         142 YAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD  192 (235)
Q Consensus       142 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  192 (235)
                             ..-|+||.|+..|..+++.+|++-|++..++|.+|+|+|++..+
T Consensus       220 -------~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  220 -------EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             -------ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence                   34588999999999999999999999999999999999887664

>KOG0502|consensus

Probab=99.86  E-value=7.4e-22  Score=141.87  Aligned_cols=144  Identities=27%  Similarity=0.239  Sum_probs=94.6

Q ss_pred             eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy5702          20 WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH   99 (235)
Q Consensus        20 ~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   99 (235)
                      ++.-|+.|.|||.+|+..|++.++++|++. |+++...-+...++|.+|++.|..+++++|+..+.|+|.-|++|-|||.
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLl  231 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLL  231 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceee
Confidence            333444455555555555555555444444 4444444444444455555444445555555554455444444444444


Q ss_pred             HHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCc
Q psy5702         100 DAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA  179 (235)
Q Consensus       100 ~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  179 (235)
                                       +|++.++.+|++.|+..|++++..+      ..|.+++..|+..|+. +|+..++.-+++...
T Consensus       232 -----------------yAvrgnhvkcve~Ll~sGAd~t~e~------dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q  287 (296)
T KOG0502|consen  232 -----------------YAVRGNHVKCVESLLNSGADVTQED------DSGYWIMDLAVALGYR-IVQQVIEKHALKLCQ  287 (296)
T ss_pred             -----------------eeecCChHHHHHHHHhcCCCccccc------ccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence                             4555567778899999999999998      8999999999999998 888888887888888


Q ss_pred             cccCCChhh
Q psy5702         180 SYAGHTPLS  188 (235)
Q Consensus       180 ~~~g~t~l~  188 (235)
                      |..-+||+|
T Consensus       288 ~~~~~~~~~  296 (296)
T KOG0502|consen  288 DSEKRTPLH  296 (296)
T ss_pred             cccCCCCCC
Confidence            888888876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=3.4e-20  Score=164.64  Aligned_cols=142  Identities=23%  Similarity=0.241  Sum_probs=129.8

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHH
Q psy5702          57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAE  120 (235)
Q Consensus        57 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~  120 (235)
                      .+..+.++|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.++++.|                |+|.|+.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            445678999999999999999999999999999999999999999999999999988                9999999


Q ss_pred             cCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHH
Q psy5702         121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       121 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~  200 (235)
                      .|+.+++++|+..+...+.        ..+.++||.|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++
T Consensus       601 ~g~~~iv~~L~~~~~~~~~--------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        601 AKHHKIFRILYHFASISDP--------HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             hCCHHHHHHHHhcCcccCc--------ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            9999999999988765443        45779999999999999999999999999999999999999999998888888


Q ss_pred             Hhhccc
Q psy5702         201 YHLADV  206 (235)
Q Consensus       201 ~~~~~~  206 (235)
                      .++...
T Consensus       673 ~Ll~~G  678 (823)
T PLN03192        673 LLIMNG  678 (823)
T ss_pred             HHHHcC
Confidence            776543

>KOG0507|consensus

Probab=99.85  E-value=2.4e-21  Score=160.79  Aligned_cols=187  Identities=28%  Similarity=0.246  Sum_probs=162.1

Q ss_pred             ceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy5702          18 RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        18 ~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                      .+++.+|.+|.|+||.|+.+|+.++++.|++. ...++..|..|.+|||+|+..|+.+++++++..+..+|.....|.||
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            45788999999999999999999999999987 77788889999999999999999999999999998899999999999


Q ss_pred             HHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhh--hhhhccCCCchHHHHHh
Q psy5702          98 LHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASY--AVYFLSLPSRPLHDAAE  159 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~t~L~~A~~  159 (235)
                      ||.|++.++.+++.+|                ++..|++.|..++++.|++..........  .....-.+-+|||.|.+
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaak  198 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAK  198 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhh
Confidence            9999999999999998                89999999999999999987322211110  00011456789999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         160 KGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       160 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      +|+.++++.|+++|.+++.....| |+||.|+.++..+++..+++..
T Consensus       199 ngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~g  244 (854)
T KOG0507|consen  199 NGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIG  244 (854)
T ss_pred             cchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhc
Confidence            999999999999999999998887 8999999988888877766553

>KOG0195|consensus

Probab=99.84  E-value=3.9e-21  Score=143.68  Aligned_cols=152  Identities=30%  Similarity=0.361  Sum_probs=131.8

Q ss_pred             HHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh
Q psy5702          34 AARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        34 A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                      =|+.|+.--++..++....++|.-|..|.+|||+|++.|+..+++.|+..|+.+|..+....||||+|+.+|+.      
T Consensus         7 wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghr------   80 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHR------   80 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccH------
Confidence            34556555555566666788899999999999999999999999999999999999999999999998887655      


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhcc--
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS--  191 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--  191 (235)
                                 ++++.|++..+++|..+      ..|+||||+||.-|...+.+=|+.+|+.+++.|++|.||++.|.  
T Consensus        81 -----------divqkll~~kadvnavn------ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen   81 -----------DIVQKLLSRKADVNAVN------EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             -----------HHHHHHHHHhcccchhh------ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH
Confidence                       55677899999999988      89999999999999999999999999999999999999999986  


Q ss_pred             -chhhHHHHHHhhccccC
Q psy5702         192 -DETTRKLLQYHLADVRG  208 (235)
Q Consensus       192 -~~~~~~~l~~~~~~~~~  208 (235)
                       ++...++.++.+++.+.
T Consensus       144 l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  144 LKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHHHHHHhCCCCCc
Confidence             35666777777777663

>KOG0512|consensus

Probab=99.84  E-value=7.4e-20  Score=126.94  Aligned_cols=151  Identities=30%  Similarity=0.320  Sum_probs=131.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhH
Q psy5702          30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEM  109 (235)
Q Consensus        30 ~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  109 (235)
                      .+.+|+..+....|+.|++.....+|.+|.+|.||||-|+..|+.+|++.|+..|++.+.+...|.||||.|+.-+    
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn----  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN----  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc----
Confidence            5789999999999999999878889999999999999999999999999999999999999999999999977654    


Q ss_pred             HHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH-HHHHHHHH-CCCCCCCccccCCChh
Q psy5702         110 VRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV-EMVRLLLS-YGADPLLASYAGHTPL  187 (235)
Q Consensus       110 ~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-~~v~~Ll~-~ga~~~~~~~~g~t~l  187 (235)
                                   +.+++..|+++|++++...      ....||||+|+...+. ..+.+|+. .++++..++..+.||+
T Consensus       142 -------------N~~va~~LLqhgaDVnA~t------~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~  202 (228)
T KOG0512|consen  142 -------------NFEVAGRLLQHGADVNAQT------KGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF  202 (228)
T ss_pred             -------------chhHHHHHHhccCcccccc------cccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence                         5566788899999999988      7788999999998765 45666665 6899999999999999


Q ss_pred             hhccchhhHHHHHHhh
Q psy5702         188 SITSDETTRKLLQYHL  203 (235)
Q Consensus       188 ~~a~~~~~~~~l~~~~  203 (235)
                      ++|.+.+...-+-..+
T Consensus       203 ~iARRT~~s~~lfe~~  218 (228)
T KOG0512|consen  203 DIARRTSMSHYLFEIV  218 (228)
T ss_pred             HHHHHhhhhHHHHHHH
Confidence            9999876554444333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=7.8e-20  Score=142.43  Aligned_cols=122  Identities=26%  Similarity=0.325  Sum_probs=103.4

Q ss_pred             CCCCCCCc-HHHHHHhcCCHHHHHHHHhcCCCCCCCC----CCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHH
Q psy5702          56 PKDNAGYT-PLHEAASHGWLDIARLLLMYGADPSDSA----IGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL  130 (235)
Q Consensus        56 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l  130 (235)
                      .+|..|.+ +|+.|++.++.+++++|++.|++++.++    ..|.||||+|+..+                 +.+++++|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~-----------------~~eivklL   89 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCD-----------------NDDAAKLL   89 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcC-----------------CHHHHHHH
Confidence            46666655 5677778899999999999999999874    58999999977664                 55667889


Q ss_pred             HHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHH
Q psy5702         131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLL  199 (235)
Q Consensus       131 ~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l  199 (235)
                      +++|++++..+.     ..|.||||.|+..++.+++++|+.+|++++.+|..|.||+|+|+..+...+.
T Consensus        90 L~~GADVN~~~~-----~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884         90 IRYGADVNRYAE-----EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HHcCCCcCcccC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHH
Confidence            999999997541     4799999999999999999999999999999999999999999876555543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3e-20  Score=133.13  Aligned_cols=130  Identities=23%  Similarity=0.258  Sum_probs=105.1

Q ss_pred             CCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC--C-----CCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHH
Q psy5702          55 APKDNAGYTPLHEAASHGWLDIARLLLMYGA--D-----PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV  127 (235)
Q Consensus        55 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~-----~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~  127 (235)
                      +.+|..|.||||+|++.|+.  ++.+...+.  +     +...|..|.||||+|+..++.+.              .+++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~--------------~e~v   74 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADP--------------QEKL   74 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhH--------------HHHH
Confidence            45678899999999999984  333332221  2     33467889999999998876643              2457


Q ss_pred             HHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       128 ~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      ++|++.|++++..+.     ..|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..+..++++.+...
T Consensus        75 ~~Ll~~gadin~~~~-----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         75 KLLMEWGADINGKER-----VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             HHHHHcCCCccccCC-----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            889999999988761     379999999999999999999998 5999999999999999999998888888877654

>KOG0514|consensus

Probab=99.82  E-value=2.4e-20  Score=143.18  Aligned_cols=160  Identities=24%  Similarity=0.237  Sum_probs=128.0

Q ss_pred             CCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHH
Q psy5702          53 GPAPKDNAGYTPLHEAASHGWLDIARLLLMYG-ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLL  131 (235)
Q Consensus        53 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~  131 (235)
                      .+|.-|.+|+|+||+|+.++|+++|+.||+.| ++++.+++-|+||+++++...-..            ....+++..|.
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~------------~~d~~vV~~LF  327 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ------------PADRTVVERLF  327 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc------------hhhHHHHHHHH
Confidence            46788999999999999999999999999985 789999999999999877542111            12345666666


Q ss_pred             HcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCC
Q psy5702         132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA  211 (235)
Q Consensus       132 ~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~  211 (235)
                      .. .++|.+..     ..|+|+|.+|+.+|..++++.|+.+|||+|+.|.+|-|+|+.|+++|+.+|++.+++.......
T Consensus       328 ~m-gnVNaKAs-----Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s  401 (452)
T KOG0514|consen  328 KM-GDVNAKAS-----QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS  401 (452)
T ss_pred             hc-cCcchhhh-----hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce
Confidence            55 45776653     6899999999999999999999999999999999999999999999999999999987554322


Q ss_pred             CcccccCCCcccccccccCC
Q psy5702         212 PKWDFAGPASCFDKQMVGYE  231 (235)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~~  231 (235)
                       --+..|.+++.-+-..|+.
T Consensus       402 -LtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  402 -LTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             -eecCCCchhhhhHHhcCch
Confidence             2344455555555445544

>KOG0505|consensus

Probab=99.82  E-value=3.3e-19  Score=143.16  Aligned_cols=186  Identities=25%  Similarity=0.282  Sum_probs=144.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHH
Q psy5702          31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMV  110 (235)
Q Consensus        31 L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  110 (235)
                      +.-||..++.+-+..|+.. +...+..+.+|.|+||-+|...+.+||++|+++|++++..|..+.||+|.|+..++..++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            5667788999999999998 677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh------------------------------HHHHHHHcCCHH------------HHHHHHHcCCCCcchhhhhhhcc
Q psy5702         111 RLL------------------------------PLHDAAEKGCVE------------MVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus       111 ~~l------------------------------~l~~a~~~~~~~------------~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      +++                              +...+...-.++            -+...+..|...+..+      .
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~------~  196 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH------A  196 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc------c
Confidence            988                              111111111111            1233344666666666      5


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCF  223 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  223 (235)
                      .|.|.||.|..+|..++..+|+++|.+++++|.+|+||||.|+..+..++...+..+.-..+.......++.+++
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            599999999999999999999999999999999999999999976655555544444333333333344444443

>KOG3676|consensus

Probab=99.80  E-value=2e-19  Score=150.93  Aligned_cols=178  Identities=30%  Similarity=0.345  Sum_probs=142.8

Q ss_pred             eeEee--cCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCC----CCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCC
Q psy5702          19 SWVIN--KHHGETPLHRAARL---GYIDAVAYCLEKFSHGPA----PKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD   89 (235)
Q Consensus        19 ~~~~~--d~~g~~~L~~A~~~---~~~~~v~~li~~~~~~~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   89 (235)
                      +|.++  -..|.|+||.|.-+   ++.+++..|++..+.-+|    .....|.||||+|+...+.++|++|++.|+|++.
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a  212 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA  212 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence            44444  47999999999974   456889999986554443    2235799999999999999999999999999987


Q ss_pred             CCCCCCcHHHHHHHhC------Chh---HHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhc
Q psy5702          90 SAIGGIRPLHDAAEKG------CVE---MVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK  160 (235)
Q Consensus        90 ~~~~g~t~l~~a~~~~------~~~---~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~  160 (235)
                      +....   ++.+...+      +.+   -....||..|+-.++.+++++|+++|+|++.+|      ..|+|.||..+..
T Consensus       213 Ra~G~---FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqD------S~GNTVLH~lVi~  283 (782)
T KOG3676|consen  213 RACGA---FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQD------SNGNTVLHMLVIH  283 (782)
T ss_pred             Hhhcc---ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccc------cCCChHHHHHHHH
Confidence            64321   11111100      000   011228888888899999999999999999999      8999999999999


Q ss_pred             CCHHHHHHHHHCCCC--CCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         161 GCVEMVRLLLSYGAD--PLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       161 ~~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      -..++..+++++|++  ..++|..|.|||..|++.+..++++..++.
T Consensus       284 ~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  284 FVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999  999999999999999999999999998877

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=1.9e-17  Score=113.97  Aligned_cols=124  Identities=44%  Similarity=0.606  Sum_probs=86.6

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      +|..|.||||+|+..++.+.+++|++. +...+..+..|.+|+|.|+..++.+++++|++.|++++..+..+.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            456777788888877777777777776 5555667777777777777777777777777777777666667777777766


Q ss_pred             HhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHH
Q psy5702         103 EKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL  170 (235)
Q Consensus       103 ~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  170 (235)
                      ..++                 .+++++|+..+.+++..+      ..+.||++.|...+..+++++|+
T Consensus        82 ~~~~-----------------~~~~~~L~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGN-----------------LDVVKLLLKHGADVNARD------KDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCc-----------------HHHHHHHHHcCCCCcccC------CCCCCHHHHHHhcCCHHHHHHhC
Confidence            5543                 344555666665555555      56677777777777777776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=6e-18  Score=109.83  Aligned_cols=89  Identities=46%  Similarity=0.572  Sum_probs=50.8

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhh
Q psy5702          65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV  144 (235)
Q Consensus        65 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~  144 (235)
                      ||+|++.|+.+++++|++.+.+++.    |.||+|+|+..                 |+.+++++|+++|++++..+   
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-----------------~~~~~~~~Ll~~g~~~~~~~---   56 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-----------------GNLEIVKLLLENGADINSQD---   56 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-----------------TTHHHHHHHHHTTTCTT-BS---
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-----------------CCHHHHHHHHHhcccccccC---
Confidence            4566666666666666665555554    45555554443                 33344555566666665555   


Q ss_pred             hhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       145 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                         ..|+||||.|+.+++.+++++|+++|++++.+|
T Consensus        57 ---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   57 ---KNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ---TTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             ---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence               556666666666666666666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369|consensus

Probab=99.76  E-value=8.5e-19  Score=150.93  Aligned_cols=185  Identities=26%  Similarity=0.216  Sum_probs=151.5

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      .-.|.++.++..|+.+..+|+.|.+||.+|+-.|+..+|+.|+..+.......|..+.|+|-+||..|..+++++||..|
T Consensus       768 gh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~g  847 (2131)
T KOG4369|consen  768 GHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAG  847 (2131)
T ss_pred             ccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhh
Confidence            34688999999999999999999999999999999999999998855545567788999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhh
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      ++-..++....||+.+|...|..+++..+                  ||.+|..+|+-+..+.|++.|.++|..-.    
T Consensus       848 ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIe----  923 (2131)
T KOG4369|consen  848 ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIE----  923 (2131)
T ss_pred             ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccc----
Confidence            99888888889999999999999998877                  78888888888888888888887776543    


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                       ...+|+|-+|+..|..+++.+|+.+.+++..+-..|.|||+-++.-+
T Consensus       924 -TNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgG  970 (2131)
T KOG4369|consen  924 -TNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGG  970 (2131)
T ss_pred             -cccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCC
Confidence             45566777777777777777777766666666666777766655443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=4.1e-17  Score=112.21  Aligned_cols=123  Identities=40%  Similarity=0.572  Sum_probs=109.8

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCC
Q psy5702          57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD  136 (235)
Q Consensus        57 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~  136 (235)
                      .+..|.||||.|+..++.+++++|++.+.+.+..+..|.+|+|.|+..++.                 ++++.|+..|..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~-----------------~~~~~ll~~~~~   65 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL-----------------EIVKLLLEKGAD   65 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH-----------------HHHHHHHHcCCC
Confidence            457899999999999999999999999999989999999999998876544                 567778888877


Q ss_pred             CcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHh
Q psy5702         137 PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYH  202 (235)
Q Consensus       137 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~  202 (235)
                      ++..+      ..+.||+|+|+..++.+++++|++.+.+.+..+..|.||+++|...+..++++++
T Consensus        66 ~~~~~------~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          66 VNARD------KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             ccccC------CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            76666      6888999999999999999999999999999999999999999988888887765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=3e-17  Score=106.51  Aligned_cols=88  Identities=43%  Similarity=0.564  Sum_probs=76.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHH
Q psy5702          31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMV  110 (235)
Q Consensus        31 L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  110 (235)
                      ||+|++.++.+++++|++. +...+.    |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+     
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-----   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENG-----   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT-----
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcC-----
Confidence            7999999999999999996 655554    899999999999999999999999999999999999999987765     


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHcCCCCcch
Q psy5702         111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLA  140 (235)
Q Consensus       111 ~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~  140 (235)
                                  +.+++++|+++|++++.+
T Consensus        71 ------------~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   71 ------------NLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             ------------HHHHHHHHHHTTT-TTSS
T ss_pred             ------------CHHHHHHHHHcCCCCCCc
Confidence                        456678889999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512|consensus

Probab=99.74  E-value=2.3e-17  Score=114.63  Aligned_cols=131  Identities=28%  Similarity=0.302  Sum_probs=107.5

Q ss_pred             HHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q psy5702           9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS   88 (235)
Q Consensus         9 ~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   88 (235)
                      +=+.|.....-++.+|.+|.||||.|+++|+.++++.|+.. +++.+.+...|+||||.||.=.+.+++-+||++|+|++
T Consensus        79 V~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn  157 (228)
T KOG0512|consen   79 VQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVN  157 (228)
T ss_pred             HHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchhHHHHHHhccCccc
Confidence            33444455556779999999999999999999999999988 88999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHH-HHHcCCCCcchhhhhhhccCCCchHHHHHhcCC
Q psy5702          89 DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL-LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC  162 (235)
Q Consensus        89 ~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~  162 (235)
                      ...+...||||.|+...+...                .+.+ |...+.......      ..+.||+.+|-+.+-
T Consensus       158 A~t~g~ltpLhlaa~~rn~r~----------------t~~~Ll~dryi~pg~~n------n~eeta~~iARRT~~  210 (228)
T KOG0512|consen  158 AQTKGLLTPLHLAAGNRNSRD----------------TLELLLHDRYIHPGLKN------NLEETAFDIARRTSM  210 (228)
T ss_pred             ccccccchhhHHhhcccchHH----------------HHHHHhhccccChhhhc------CccchHHHHHHHhhh
Confidence            999999999999987654432                2333 344555555555      678899999977653

>KOG0195|consensus

Probab=99.72  E-value=6.3e-17  Score=121.29  Aligned_cols=117  Identities=32%  Similarity=0.374  Sum_probs=106.7

Q ss_pred             hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy5702          17 VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIR   96 (235)
Q Consensus        17 ~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   96 (235)
                      ..|.+.-|.+|.+|||+||+.|+..+++.|+.. |+.+|..+.-.-||||+|+..|+.++++.|++..+|+|..+..|.|
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgnt  102 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT  102 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC
Confidence            346678889999999999999999999999998 8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH
Q psy5702          97 PLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA  157 (235)
Q Consensus        97 ~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A  157 (235)
                      |||+|+.-|                 ...+++-|++.|+-+++.+      +.|.|||..|
T Consensus       103 plhyacfwg-----------------ydqiaedli~~ga~v~icn------k~g~tpldka  140 (448)
T KOG0195|consen  103 PLHYACFWG-----------------YDQIAEDLISCGAAVNICN------KKGMTPLDKA  140 (448)
T ss_pred             chhhhhhhc-----------------HHHHHHHHHhccceeeecc------cCCCCchhhh
Confidence            999977654                 4556788899999999998      8999999876

>KOG4369|consensus

Probab=99.68  E-value=7.2e-17  Score=139.31  Aligned_cols=203  Identities=24%  Similarity=0.222  Sum_probs=176.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHH
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD-SAIGGIRPLHDAAE  103 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~a~~  103 (235)
                      ..-.|+|..||..|+.|.+++|+.. |.++..+|+.|.+||.+|+-.|+..+|+.|+.+.++++. .|+.+.|+|.+|+.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh-cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            4557899999999999999999988 889999999999999999999999999999999999876 57789999999999


Q ss_pred             hCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHH
Q psy5702         104 KGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR  167 (235)
Q Consensus       104 ~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  167 (235)
                      .|+.++++.|                |+.+|...|..+++..|+.+|..++.....    +.|-.||.+|.++|+...+.
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgS----klgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGS----KLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccccc----ccCcchhhhhhhccccHHHH
Confidence            9999999988                899999999999999999999888876532    68999999999999999999


Q ss_pred             HHHHCCCCCCCc-cccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCC
Q psy5702         168 LLLSYGADPLLA-SYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       168 ~Ll~~ga~~~~~-~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                      .|++.|-|||.. .-+..|+|-+|+--+..+++..+++.....+-.  .-+|.+++......||-++.
T Consensus       910 ~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehR--aktgltplme~AsgGyvdvg  975 (2131)
T KOG4369|consen  910 SLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHR--AKTGLTPLMEMASGGYVDVG  975 (2131)
T ss_pred             HHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhh--cccCCcccchhhcCCccccc
Confidence            999999888763 234679999999888888888887775544333  44577888888888886553

>KOG4214|consensus

Probab=99.66  E-value=6.3e-16  Score=96.28  Aligned_cols=110  Identities=28%  Similarity=0.383  Sum_probs=76.5

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhh
Q psy5702          65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV  144 (235)
Q Consensus        65 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~  144 (235)
                      +.|+++.|..+-++..+..|.+++..- .|++|||+|+.+|                 +.+++.+|+..|++++..+   
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~G-----------------Ql~ilefli~iGA~i~~kD---   64 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYG-----------------QLSILEFLISIGANIQDKD---   64 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcc-----------------hHHHHHHHHHhccccCCcc---
Confidence            566777777777777777776665443 5667777765553                 4445566677777777777   


Q ss_pred             hhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHH
Q psy5702         145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL  198 (235)
Q Consensus       145 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~  198 (235)
                         +.|-|||..|++.|+.++|++|++.||+..++..+|.+.+..+......++
T Consensus        65 ---KygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~L  115 (117)
T KOG4214|consen   65 ---KYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATEEEDIREL  115 (117)
T ss_pred             ---ccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhccHHHHHHH
Confidence               677788888888888888888888888888888888777665555444443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=1.2e-14  Score=110.19  Aligned_cols=137  Identities=37%  Similarity=0.426  Sum_probs=121.2

Q ss_pred             CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHH
Q psy5702          52 HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLL  131 (235)
Q Consensus        52 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~  131 (235)
                      ......+..+.++++.++..+...++++++..|++++.++..|.||+|+|+..++.            ..+..++++.|+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~------------~~~~~~~~~~ll  131 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP------------PEGNIEVAKLLL  131 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc------------ccchHHHHHHHH
Confidence            33455667799999999999999999999999999999999999999999888764            234478889999


Q ss_pred             HcCC---CCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         132 SYGA---DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       132 ~~g~---~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      +.|+   ..+..+      ..|.||||+|+..|+.++++.|++.|++++.++..|.|++++|+..+..+++..+....
T Consensus       132 ~~g~~~~~~~~~~------~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         132 EAGADLDVNNLRD------EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HcCCCCCCccccC------CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999   444446      89999999999999999999999999999999999999999999999999999888764

>KOG3676|consensus

Probab=99.61  E-value=8.4e-15  Score=123.48  Aligned_cols=126  Identities=29%  Similarity=0.267  Sum_probs=110.3

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC---------C--------------CCCCCcHHHHHHhcCCHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---------K--------------DNAGYTPLHEAASHGWLDIARL   79 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~---------~--------------~~~g~t~L~~A~~~~~~~~v~~   79 (235)
                      ....|+||||+|+.+.+.+.|.+|++. |++++.         .              -..|+.||-+|+..++.+++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            447899999999999999999999998 777642         1              1358899999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCC--CcchhhhhhhccCCCchHHHH
Q psy5702          80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD--PLLASYAVYFLSLPSRPLHDA  157 (235)
Q Consensus        80 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~t~L~~A  157 (235)
                      |+++|+|++.+|..|+|.||..+..                 ...++.++++++|++  ....+      ..|-|||.+|
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~-----------------~~~~My~~~L~~ga~~l~~v~N------~qgLTPLtLA  315 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIH-----------------FVTEMYDLALELGANALEHVRN------NQGLTPLTLA  315 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHH-----------------HHHHHHHHHHhcCCCccccccc------cCCCChHHHH
Confidence            9999999999999999999986654                 245778999999998  55555      7899999999


Q ss_pred             HhcCCHHHHHHHHHC
Q psy5702         158 AEKGCVEMVRLLLSY  172 (235)
Q Consensus       158 ~~~~~~~~v~~Ll~~  172 (235)
                      ++.|..++.+.+++.
T Consensus       316 aklGk~emf~~ile~  330 (782)
T KOG3676|consen  316 AKLGKKEMFQHILER  330 (782)
T ss_pred             HHhhhHHHHHHHHHh
Confidence            999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=3.4e-14  Score=107.74  Aligned_cols=128  Identities=40%  Similarity=0.491  Sum_probs=115.0

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC---CCCCCCCC
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW-----LDIARLLLMYGA---DPSDSAIG   93 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~---~~~~~~~~   93 (235)
                      .++..+.+++|.++..+..+.+.+++.. +.+++.++..|.||||+|+..++     .++++.|++.|+   ..+.++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            4556689999999999999999998888 77889999999999999999999     999999999999   66777999


Q ss_pred             CCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCC
Q psy5702          94 GIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG  173 (235)
Q Consensus        94 g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  173 (235)
                      |.||+|+|+..++.                 +++..+++.|++++..+      ..|.|++++|+..+..+++..+++.+
T Consensus       147 g~tpl~~A~~~~~~-----------------~~~~~ll~~~~~~~~~~------~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDA-----------------DIVELLLEAGADPNSRN------SYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCch-----------------HHHHHHHhcCCCCcccc------cCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999998877555                 55677888899988886      79999999999999999999999976

>KOG4214|consensus

Probab=99.57  E-value=9.7e-15  Score=91.01  Aligned_cols=96  Identities=29%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             ccchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           3 TQSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      .++..+-+++....+.+++-. ..|++|||||+-+|+.+++.+|+.. |++++.+|+.|-|||-.|+-.|+.+++++|++
T Consensus        11 kNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~cVklLL~   88 (117)
T KOG4214|consen   11 KNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQ   88 (117)
T ss_pred             ccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHHHHHHHH
Confidence            356677888888888665433 3789999999999999999999998 88899999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHH
Q psy5702          83 YGADPSDSAIGGIRPLHD  100 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~  100 (235)
                      +|++...+...|.+.+..
T Consensus        89 ~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   89 NGADRTIHAPDGTALIEA  106 (117)
T ss_pred             cCcccceeCCCchhHHhh
Confidence            999998888888765543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=2.2e-15  Score=88.41  Aligned_cols=55  Identities=45%  Similarity=0.567  Sum_probs=33.0

Q ss_pred             HHHcC-CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhc
Q psy5702         130 LLSYG-ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT  190 (235)
Q Consensus       130 l~~~g-~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a  190 (235)
                      |+++| .+++..+      ..|.||||+|+++|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d------~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQD------KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---------TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcC------CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 7777777      8999999999999999999999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=5e-14  Score=82.18  Aligned_cols=54  Identities=46%  Similarity=0.692  Sum_probs=40.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL   81 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   81 (235)
                      |.||||+|++.|+.+++++|++. +.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67888888888888888888887 7778888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=3e-14  Score=83.56  Aligned_cols=56  Identities=43%  Similarity=0.554  Sum_probs=29.1

Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy5702          46 CLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA  101 (235)
Q Consensus        46 li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  101 (235)
                      |++.+..+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            35553477778888888888888888888888888888888888888888888875

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=3.3e-13  Score=117.30  Aligned_cols=105  Identities=40%  Similarity=0.514  Sum_probs=92.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhh
Q psy5702          64 PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYA  143 (235)
Q Consensus        64 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~  143 (235)
                      .|+.|+..|+.++++.|++.|++++.+|..|.||||+|+..+                 +.+++++|+++|++++..+  
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g-----------------~~eiv~~LL~~Gadvn~~d--  145 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG-----------------HVQVVRVLLEFGADPTLLD--  145 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCC-----------------CHHHHHHHHHCCCCCCCCC--
Confidence            478899999999999999999999999999999999977664                 5566788899999999888  


Q ss_pred             hhhccCCCchHHHHHhcCCHHHHHHHHHC-------CCCCCCccccCCChhhhcc
Q psy5702         144 VYFLSLPSRPLHDAAEKGCVEMVRLLLSY-------GADPLLASYAGHTPLSITS  191 (235)
Q Consensus       144 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-------ga~~~~~~~~g~t~l~~a~  191 (235)
                          ..|.||||+|+..++.+++++|+++       |++.+..+..|.+|+..+.
T Consensus       146 ----~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        146 ----KDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             ----CCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence                7899999999999999999999998       8999888888888776443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=7.2e-14  Score=81.49  Aligned_cols=54  Identities=35%  Similarity=0.513  Sum_probs=44.0

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhh
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHL  203 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~  203 (235)
                      |+||||+|++.|+.+++++|+++|++++.+|.+|.||||+|+..++.++++.++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999999999999999999999999999999999998764

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=1.8e-12  Score=112.71  Aligned_cols=82  Identities=35%  Similarity=0.491  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhH
Q psy5702          30 PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEM  109 (235)
Q Consensus        30 ~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  109 (235)
                      .|+.|+..|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            48899999999999999997 88899999999999999999999999999999999999999999999999888766655


Q ss_pred             HHH
Q psy5702         110 VRL  112 (235)
Q Consensus       110 ~~~  112 (235)
                      +++
T Consensus       164 v~~  166 (664)
T PTZ00322        164 VQL  166 (664)
T ss_pred             HHH
Confidence            443

>KOG0515|consensus

Probab=99.42  E-value=1.1e-12  Score=105.94  Aligned_cols=118  Identities=27%  Similarity=0.379  Sum_probs=85.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHH
Q psy5702          31 LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMV  110 (235)
Q Consensus        31 L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  110 (235)
                      |.-|+-.|.+++|+..+.. -.+....+..|-|+||-|+..|+++||++|+++|+++|..|..|+||||.|+.+++.   
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv---  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV---  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch---
Confidence            4567777888888888877 566667777888888888888888888888888888888888888888887766444   


Q ss_pred             HHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHH--hcCCHHHHHHHHH
Q psy5702         111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAA--EKGCVEMVRLLLS  171 (235)
Q Consensus       111 ~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~  171 (235)
                                    .+++.|++.|+.+-....     .++.|+...+-  ..|..+|.+||-.
T Consensus       630 --------------~~ckqLVe~GaavfAsTl-----SDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 --------------PMCKQLVESGAAVFASTL-----SDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             --------------HHHHHHHhccceEEeeec-----ccccchhhhcchhhhhHHHHHHHHHH
Confidence                          456677888776655443     45667665443  3466777777764

>KOG1710|consensus

Probab=99.41  E-value=3.9e-12  Score=95.68  Aligned_cols=120  Identities=31%  Similarity=0.299  Sum_probs=92.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD-SAIGGIRPLHDAAEKG  105 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~a~~~~  105 (235)
                      -+.||.-++..++.+.+..|++. ...+|..|..|.|+|..|+..|+.++++.|++.|+|+|. ++..+.||||+|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35788888888888888888876 455778888888888888888888888888888888876 4556788888877664


Q ss_pred             ChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHH
Q psy5702         106 CVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL  170 (235)
Q Consensus       106 ~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  170 (235)
                                       +.+++++|++.|+.....+      .-|+|+-.+|+.-|+.++|..+-
T Consensus        91 -----------------n~dvcrllldaGa~~~~vN------svgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   91 -----------------NQDVCRLLLDAGARMYLVN------SVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             -----------------CchHHHHHHhccCcccccc------chhhhHHHHHHHhcchHHHHHHh
Confidence                             4455677788888877666      67888888888888877776543

>KOG0515|consensus

Probab=99.40  E-value=2e-12  Score=104.48  Aligned_cols=115  Identities=31%  Similarity=0.367  Sum_probs=96.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhh
Q psy5702          65 LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV  144 (235)
Q Consensus        65 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~  144 (235)
                      |.-|+..|-.++|+.++..--|+...+..|.|+||-|+..|                 +.+|+++|+..|+++|..|   
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCag-----------------hyeIVkFLi~~ganVNa~D---  613 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAG-----------------HYEIVKFLIEFGANVNAAD---  613 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcc-----------------hhHHHHHHHhcCCcccCcc---
Confidence            34577789999999999999999999999999999977664                 5567788899999999999   


Q ss_pred             hhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc-ccCCChhhhccc--hhhHHHHHHh
Q psy5702         145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS-YAGHTPLSITSD--ETTRKLLQYH  202 (235)
Q Consensus       145 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~t~l~~a~~--~~~~~~l~~~  202 (235)
                         .+|+||||+|+..++.-+++.|++.|+.+.... .++.||..-+..  .|...+.+++
T Consensus       614 ---SdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  614 ---SDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             ---CCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence               899999999999999999999999999987644 467788776543  4555666553

>KOG1710|consensus

Probab=99.37  E-value=5.9e-12  Score=94.74  Aligned_cols=105  Identities=29%  Similarity=0.217  Sum_probs=95.8

Q ss_pred             HHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q psy5702           8 DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPA-PKDNAGYTPLHEAASHGWLDIARLLLMYGAD   86 (235)
Q Consensus         8 ~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   86 (235)
                      +....|++.+..++..|..|+++|..|+..|+.++++.|++. ++++| .++..+.||||+|+.+|+.++.+.|++.|+.
T Consensus        26 ~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~  104 (396)
T KOG1710|consen   26 EAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR  104 (396)
T ss_pred             HHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc
Confidence            345567778888999999999999999999999999999999 67666 5667899999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHhCChhHHHHh
Q psy5702          87 PSDSAIGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        87 ~~~~~~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                      +...+.-|+|+-..|+.-|+-+++..+
T Consensus       105 ~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  105 MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999999999999998877

>KOG0818|consensus

Probab=99.03  E-value=7.4e-10  Score=89.15  Aligned_cols=83  Identities=31%  Similarity=0.410  Sum_probs=76.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      -||.+++.|+.+.+-.|+..|+++|..+.     ..|.||||.|++.|+..-+++|+-+|||+...|..|+||+.+|...
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hp-----ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHP-----EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCc-----ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence            68999999999999999999999999886     7899999999999999999999999999999999999999999987


Q ss_pred             hhHHHHHH
Q psy5702         194 TTRKLLQY  201 (235)
Q Consensus       194 ~~~~~l~~  201 (235)
                      ++.++-..
T Consensus       211 gH~~laeR  218 (669)
T KOG0818|consen  211 GHHELAER  218 (669)
T ss_pred             CchHHHHH
Confidence            66655443

>PF13606 Ank_3: Ankyrin repeat

Probab=99.00  E-value=6.9e-10  Score=55.81  Aligned_cols=30  Identities=43%  Similarity=0.548  Sum_probs=27.9

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCC
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLL  178 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  178 (235)
                      .|+||||+|++.|+.+++++|+++|+|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            488999999999999999999999999873

>KOG0506|consensus

Probab=98.97  E-value=7.9e-10  Score=88.61  Aligned_cols=91  Identities=27%  Similarity=0.312  Sum_probs=83.4

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY-GADPSDSAIGGIRPLHD  100 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~  100 (235)
                      .++.++...+.+|++.|++..++.+.-. +.+....|.+.+|+||.|+..|+++++++|++. +.+++.+|.+|+|||.-
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            3455667899999999999999998887 899999999999999999999999999999985 89999999999999999


Q ss_pred             HHHhCChhHHHHh
Q psy5702         101 AAEKGCVEMVRLL  113 (235)
Q Consensus       101 a~~~~~~~~~~~l  113 (235)
                      |...++.+++++|
T Consensus       580 A~~F~h~~v~k~L  592 (622)
T KOG0506|consen  580 AKHFKHKEVVKLL  592 (622)
T ss_pred             hHhcCcHHHHHHH
Confidence            9999988888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.94  E-value=1.7e-09  Score=55.93  Aligned_cols=33  Identities=39%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY  181 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  181 (235)
                      .|.||||+|+..++.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            488999999999999999999999999998873

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.94  E-value=5.8e-10  Score=94.94  Aligned_cols=93  Identities=27%  Similarity=0.274  Sum_probs=83.0

Q ss_pred             HHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHhcCCHHHHHHHHhcCCC
Q psy5702           8 DTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDN-AGYTPLHEAASHGWLDIARLLLMYGAD   86 (235)
Q Consensus         8 ~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~   86 (235)
                      .+++..-.+  -++++|..|+++||+|+..+..+++.+|+++ |.+++.+|. .|.||||-|+..|+.+++-.||+.|..
T Consensus        35 ~F~~k~c~n--~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   35 GFSEKSCQN--LANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHhhhh--hhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            344443333  3778999999999999999999999999999 999998885 599999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHH
Q psy5702          87 PSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        87 ~~~~~~~g~t~l~~a~~  103 (235)
                      +..+|+.|..||...++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            99999999999998776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.90  E-value=2.8e-09  Score=53.59  Aligned_cols=29  Identities=52%  Similarity=0.716  Sum_probs=22.5

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q psy5702          60 AGYTPLHEAASHGWLDIARLLLMYGADPS   88 (235)
Q Consensus        60 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   88 (235)
                      +|+||||+|++.|+.+++++|++.|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47778888888888888888888877765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.87  E-value=5.2e-09  Score=54.06  Aligned_cols=32  Identities=50%  Similarity=0.651  Sum_probs=25.3

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q psy5702          60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSA   91 (235)
Q Consensus        60 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   91 (235)
                      +|.||||+|+..|+.+++++|++.|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.82  E-value=1.4e-09  Score=92.74  Aligned_cols=84  Identities=26%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             CCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHH
Q psy5702          87 PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV  166 (235)
Q Consensus        87 ~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v  166 (235)
                      .+++|..|++++|.++..+..                 +++++|+.+|++++.+|.     ..|.||||-|+.+|+.+++
T Consensus        45 anikD~~GR~alH~~~S~~k~-----------------~~l~wLlqhGidv~vqD~-----ESG~taLHRaiyyG~idca  102 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKN-----------------SFLRWLLQHGIDVFVQDE-----ESGYTALHRAIYYGNIDCA  102 (1267)
T ss_pred             hhHHHhhccceeeeeeccchh-----------------HHHHHHHhcCceeeeccc-----cccchHhhHhhhhchHHHH
Confidence            577888999999998877554                 556778999999999987     7899999999999999999


Q ss_pred             HHHHHCCCCCCCccccCCChhhhccc
Q psy5702         167 RLLLSYGADPLLASYAGHTPLSITSD  192 (235)
Q Consensus       167 ~~Ll~~ga~~~~~~~~g~t~l~~a~~  192 (235)
                      -.|+.+|+.+.++|..|..||+..++
T Consensus       103 ~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  103 SLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHhcCCceEEecccCCCHHHHHhh
Confidence            99999999999999999999998775

>KOG0506|consensus

Probab=98.78  E-value=7.5e-09  Score=83.13  Aligned_cols=88  Identities=25%  Similarity=0.252  Sum_probs=81.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccc
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSD  192 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~  192 (235)
                      .+.+|+..|....++.+.-.|.+++..+      .+.+|+||+|+..|+.+++++|++ .+.+++.+|++|+|||+-|..
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~D------yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKD------YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccc------cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            7888999999999999999999999998      789999999999999999999998 599999999999999999999


Q ss_pred             hhhHHHHHHhhcccc
Q psy5702         193 ETTRKLLQYHLADVR  207 (235)
Q Consensus       193 ~~~~~~l~~~~~~~~  207 (235)
                      .++.++++.+.....
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            888888888766554

>KOG0818|consensus

Probab=98.67  E-value=1.6e-07  Score=76.05  Aligned_cols=109  Identities=26%  Similarity=0.318  Sum_probs=89.1

Q ss_pred             cchHHHHHHHhhhhcee---EeecCCCCc------HHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCC
Q psy5702           4 QSLGDTVEDVGAEVRSW---VINKHHGET------PLHRAARLGYIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASHGW   73 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~---~~~d~~g~~------~L~~A~~~~~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~~~   73 (235)
                      +...+||+.-.....=+   -.+|.+|.+      -||.+++.|+.+.--.||.. |++.|+.+ ..|.||||.|++.|+
T Consensus       101 p~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq  179 (669)
T KOG0818|consen  101 PNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQ  179 (669)
T ss_pred             ccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccc
Confidence            34456666544433222   246666654      58999999999999999998 78887766 569999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh
Q psy5702          74 LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        74 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                      ..-+++|+-.|+|+...|..|.||+.+|-..|+-++.+-|
T Consensus       180 ~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  180 ILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERL  219 (669)
T ss_pred             hhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHH
Confidence            9999999999999999999999999999999999887755

>KOG0782|consensus

Probab=98.66  E-value=6.5e-08  Score=79.62  Aligned_cols=101  Identities=26%  Similarity=0.269  Sum_probs=89.2

Q ss_pred             HhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q psy5702          13 VGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG-PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA   91 (235)
Q Consensus        13 ~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   91 (235)
                      .-.+|.+..+++.+..+.||+|++-|+-++|+|++++.+.. ++.-|..|.|+||-|+..++..+.++|++.|+.+-..|
T Consensus       885 ~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd  964 (1004)
T KOG0782|consen  885 THLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTD  964 (1004)
T ss_pred             HHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecc
Confidence            34567788999999999999999999999999999985432 35667899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCChhHHHHh
Q psy5702          92 IGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        92 ~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                      ..|.||-.-|-..+..+...+|
T Consensus       965 ~kg~tp~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  965 SKGKTPQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             cCCCChHHHHHhcCCchHHHHH
Confidence            9999999998888888776655

>KOG0522|consensus

Probab=98.54  E-value=3.7e-07  Score=74.61  Aligned_cols=85  Identities=35%  Similarity=0.419  Sum_probs=73.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCh
Q psy5702          29 TPLHRAARLGYIDAVAYCLE-KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV  107 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  107 (235)
                      .|+|+++.....+.+...+. .....++..|..|+||||+|+..|+.+.++.|+..|+++..++..|.+|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45899998888777666443 34556788999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHh
Q psy5702         108 EMVRLL  113 (235)
Q Consensus       108 ~~~~~l  113 (235)
                      +++..+
T Consensus       102 q~i~~v  107 (560)
T KOG0522|consen  102 QIITEV  107 (560)
T ss_pred             HHHHHH
Confidence            887666

>KOG0705|consensus

Probab=98.49  E-value=6.2e-07  Score=74.02  Aligned_cols=91  Identities=30%  Similarity=0.362  Sum_probs=74.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          30 PLHRAARLGYIDAVAYCLEKFS---HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        30 ~L~~A~~~~~~~~v~~li~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      -|..|+...++..+-.|+.++.   .+....+..|+|+||+|++.|++.+.++|+-.|+|+..+|..|.|+|.+|-+.  
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a--  704 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA--  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc--
Confidence            4677888888888888888733   22235567789999999999999999999999999999999999999997765  


Q ss_pred             hhHHHHhHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5702         107 VEMVRLLPLHDAAEKGCVEMVRLLLSYGADP  137 (235)
Q Consensus       107 ~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~  137 (235)
                                     |.-+++.+|+.+|+-.
T Consensus       705 ---------------~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 ---------------GSQECIDVLLQYGCPD  720 (749)
T ss_pred             ---------------ccHHHHHHHHHcCCCc
Confidence                           4556778888888753

>KOG0522|consensus

Probab=98.47  E-value=3.1e-07  Score=75.06  Aligned_cols=87  Identities=25%  Similarity=0.253  Sum_probs=65.2

Q ss_pred             HHHHHHcCCHHHHHHHH--HcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccc
Q psy5702         115 LHDAAEKGCVEMVRLLL--SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD  192 (235)
Q Consensus       115 l~~a~~~~~~~~~~~l~--~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  192 (235)
                      +|++......+.+...+  +.+..++..+      ..|+||||+|+..|+...+..|+.+||++.++|+.|.+|||-|+.
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D------~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRD------PPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceecccc------CCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            44454444444443322  2334455555      788999999999999999999999999999999999999999998


Q ss_pred             hhhHHHHHHhhcccc
Q psy5702         193 ETTRKLLQYHLADVR  207 (235)
Q Consensus       193 ~~~~~~l~~~~~~~~  207 (235)
                      .+..+++..++....
T Consensus        98 ~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   98 TGNEQIITEVLRHLK  112 (560)
T ss_pred             cCCHHHHHHHHHHhH
Confidence            877777665554433

>KOG0782|consensus

Probab=98.46  E-value=9e-07  Score=73.10  Aligned_cols=104  Identities=23%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCC--CcchhhhhhhccCCCchHHHHHh
Q psy5702          82 MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD--PLLASYAVYFLSLPSRPLHDAAE  159 (235)
Q Consensus        82 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~t~L~~A~~  159 (235)
                      .+|.++-.++....+.||+|+..|+.                 +++++++.+|..  ++..+      ..|.|+||.|+-
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~-----------------eivkyildh~p~elld~~d------e~get~lhkaa~  943 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNG-----------------EIVKYILDHGPSELLDMAD------ETGETALHKAAC  943 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCCh-----------------HHHHHHHhcCCHHHHHHHh------hhhhHHHHHHHH
Confidence            34555555555556666665554333                 334444444432  12222      578888888888


Q ss_pred             cCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccC
Q psy5702         160 KGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRG  208 (235)
Q Consensus       160 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~  208 (235)
                      .++-.+.++|++.|+.+..+|..|.||-.-|...+..++-.|+......
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             hcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence            8888888888888888888888888888888888888877776655443

>KOG3609|consensus

Probab=98.42  E-value=1e-06  Score=75.90  Aligned_cols=134  Identities=25%  Similarity=0.207  Sum_probs=97.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFS---HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA  101 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  101 (235)
                      ..+.--+..|+..|++..|+..++...   .++|..|.-|.++|++|+...+.+++++|++.+...       ..+|..|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            445556788999999999999998633   356789999999999999999999999999987665       2377788


Q ss_pred             HHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCC
Q psy5702         102 AEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL  178 (235)
Q Consensus       102 ~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  178 (235)
                      ++.+..+.++.+..|.....+...        ..+.+...     ...+-|||.+|+..++++|+++|+++|+.+..
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~--------~~d~~~~~-----ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLER--------SGDANSPH-----FTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhcc--------ccccCccc-----CCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            877766666555222211111000        11111111     15678999999999999999999999988754

>KOG0705|consensus

Probab=98.41  E-value=6e-07  Score=74.08  Aligned_cols=76  Identities=25%  Similarity=0.208  Sum_probs=65.6

Q ss_pred             HHhhhhceeE----eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q psy5702          12 DVGAEVRSWV----INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP   87 (235)
Q Consensus        12 ~~~~~~~~~~----~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   87 (235)
                      .|+.+|....    ..+.+|+|+||+||+.|++.+.|+||=. +.++...|..|+|+|++|-+.|..+++..|++.|...
T Consensus       642 lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  642 LLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             HHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            4555555544    4567889999999999999999999965 9999999999999999999999999999999998764


Q ss_pred             C
Q psy5702          88 S   88 (235)
Q Consensus        88 ~   88 (235)
                      +
T Consensus       721 e  721 (749)
T KOG0705|consen  721 E  721 (749)
T ss_pred             c
Confidence            3

>KOG0511|consensus

Probab=98.29  E-value=3.8e-06  Score=66.24  Aligned_cols=70  Identities=31%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                      .--|..||+.|+.+.+++|++. |.++|..|....+||++|+.+|+..++++|+++|+--..-.-.|...+
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            5568999999999999999996 999999999999999999999999999999999987654333444333

>KOG0511|consensus

Probab=98.29  E-value=3.5e-06  Score=66.44  Aligned_cols=80  Identities=28%  Similarity=0.328  Sum_probs=67.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      .+..|++.|..+.+++|++.|.++|..+      +....||.+|+..|+..++++|+++||--.....+|..++.-|...
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD------~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLnd  112 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVD------RFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALND  112 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhh------cccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhhH
Confidence            4556888899999999999999999999      8999999999999999999999999998877777887776555544


Q ss_pred             hhHHHH
Q psy5702         194 TTRKLL  199 (235)
Q Consensus       194 ~~~~~l  199 (235)
                      ...+++
T Consensus       113 ~IR~ml  118 (516)
T KOG0511|consen  113 RIRRML  118 (516)
T ss_pred             HHHHHH
Confidence            444333

>KOG2505|consensus

Probab=98.16  E-value=5e-06  Score=67.70  Aligned_cols=79  Identities=23%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHH
Q psy5702         122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       122 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~  200 (235)
                      .-...+.+|.+++.+.|..-.....+....|+||.|+..|...++.+|++.|+|+..+|..|+||++++....+..+++
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHHH
Confidence            3466778888888776544433333366889999999999999999999999999999999999999999887777777

>KOG2384|consensus

Probab=98.12  E-value=6.7e-06  Score=58.83  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCC-CCCCCccccCCChhhhccchhhHHHHHHhhccccC
Q psy5702         134 GADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG-ADPLLASYAGHTPLSITSDETTRKLLQYHLADVRG  208 (235)
Q Consensus       134 g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~  208 (235)
                      +.++|..|      ..|+|++.+|+..|..+.+.||+++| +++..+|..|.+++.+|.+.+...++..+-.+..+
T Consensus         2 e~~in~rD------~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARD------AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchh------hhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            35677777      79999999999999999999999999 99999999999999999999888888777666444

>KOG0521|consensus

Probab=98.11  E-value=3.4e-06  Score=74.28  Aligned_cols=90  Identities=37%  Similarity=0.406  Sum_probs=81.3

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      +-..|.++||.|+..+.....+.|++. ++++|..|..|.+|+|.+...|+...+..+++.|++.+..+..|.+|+++|.
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            446789999999999999999999998 8889999999999999999999999999999999999999999999999998


Q ss_pred             HhCChhHHHHh
Q psy5702         103 EKGCVEMVRLL  113 (235)
Q Consensus       103 ~~~~~~~~~~l  113 (235)
                      ...+.+...++
T Consensus       731 ~~~~~d~~~l~  741 (785)
T KOG0521|consen  731 EAANADIVLLL  741 (785)
T ss_pred             hhccccHHHHH
Confidence            77666655443

>KOG2384|consensus

Probab=98.00  E-value=2.1e-05  Score=56.37  Aligned_cols=70  Identities=20%  Similarity=0.091  Sum_probs=63.7

Q ss_pred             hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q psy5702          17 VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD   86 (235)
Q Consensus        17 ~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   86 (235)
                      +.+++.+|..|+|++..|+..|+.+.+.||+..+.+.+...|..+..++.+|=+.|..+++..|-+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4578899999999999999999999999999995589999999999999999999999999999886433

>KOG0521|consensus

Probab=97.98  E-value=4.8e-06  Score=73.33  Aligned_cols=74  Identities=38%  Similarity=0.453  Sum_probs=68.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccch
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      ++|.|+..+..-+.+.|++.|+++|..+      ..|++|+|.+...|+...+..|+.+|++.+..+.+|++|+++|...
T Consensus       659 ~lh~a~~~~~~~~~e~ll~~ga~vn~~d------~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  659 LLHVAVGTGDSGAVELLLQNGADVNALD------SKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hhhhhhccchHHHHHHHHhcCCcchhhh------ccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            7777888888888999999999999998      8999999999999999999999999999999999999999999653

>KOG0520|consensus

Probab=97.76  E-value=3.7e-05  Score=68.06  Aligned_cols=82  Identities=24%  Similarity=0.147  Sum_probs=35.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG  105 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  105 (235)
                      .|++.+|+++..+..-+++.+++-.+......|..|.-.+|+++..|..-.+....-.|..++.+|..|+||||||...|
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            44455555555555555555554322222334444444444433222222222222234445555555555555544444


Q ss_pred             Ch
Q psy5702         106 CV  107 (235)
Q Consensus       106 ~~  107 (235)
                      +.
T Consensus       653 ~e  654 (975)
T KOG0520|consen  653 RE  654 (975)
T ss_pred             HH
Confidence            33

>KOG3609|consensus

Probab=97.74  E-value=4.8e-05  Score=65.99  Aligned_cols=90  Identities=23%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC--------
Q psy5702          16 EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP--------   87 (235)
Q Consensus        16 ~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------   87 (235)
                      ..-.++..|.-|+++|+.|+.+.+.+++++|+++ +...       ..+|.+|+..|.++.++.++..-...        
T Consensus        51 ~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d  122 (822)
T KOG3609|consen   51 SKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGD  122 (822)
T ss_pred             cccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccc
Confidence            3456789999999999999999999999999987 3222       55899999999999999999863322        


Q ss_pred             --CCCCCCCCcHHHHHHHhCChhHHHHh
Q psy5702          88 --SDSAIGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        88 --~~~~~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                        ...-.-+.||+..|+..++.++++.|
T Consensus       123 ~~~~~ft~ditPliLAAh~NnyEil~~L  150 (822)
T KOG3609|consen  123 ANSPHFTPDITPLMLAAHLNNFEILQCL  150 (822)
T ss_pred             cCcccCCCCccHHHHHHHhcchHHHHHH
Confidence              11223356777776666555554443

>KOG0520|consensus

Probab=97.72  E-value=2.5e-05  Score=69.02  Aligned_cols=104  Identities=23%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             HHHHHhhh-hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q psy5702           9 TVEDVGAE-VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP   87 (235)
Q Consensus         9 ~~~~~~~~-~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   87 (235)
                      +++.++.- +.-....|.+|+..+|+ |..+.++..-+++.-.+..++.+|..|+||||+|+..|+..++..|++.|++.
T Consensus       589 Lie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  589 LIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             HHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            44444443 45556778889999999 55666777767776668889999999999999999999999999999877664


Q ss_pred             ------CCCCCCCCcHHHHHHHhCChhHHHHh
Q psy5702          88 ------SDSAIGGIRPLHDAAEKGCVEMVRLL  113 (235)
Q Consensus        88 ------~~~~~~g~t~l~~a~~~~~~~~~~~l  113 (235)
                            ......|.|+-..|...|+..+..+|
T Consensus       668 ~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  668 GAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             ccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence                  33455699999999999999888777

>smart00248 ANK ankyrin repeats

Probab=97.37  E-value=0.00045  Score=33.25  Aligned_cols=28  Identities=54%  Similarity=0.681  Sum_probs=25.2

Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCCCC
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGADPL  177 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~~~  177 (235)
                      +.||+|+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6799999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.30  E-value=0.00067  Score=32.59  Aligned_cols=27  Identities=56%  Similarity=0.764  Sum_probs=17.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCC
Q psy5702          61 GYTPLHEAASHGWLDIARLLLMYGADP   87 (235)
Q Consensus        61 g~t~L~~A~~~~~~~~v~~Ll~~g~~~   87 (235)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.15  E-value=0.014  Score=42.14  Aligned_cols=123  Identities=17%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCh
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV  107 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  107 (235)
                      ...|.-|++++...++++.=+.... .   -....+.+-.||+..+.++|+++-+.-.-.+..     +.+..|....+.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~-~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~-----~iFdIA~~~kDl  117 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLEN-E---RYLNQELFELACEEQKYDIVKWIGQNLHIYNPE-----DIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhc-c---hhHHHHHHHHHHHHccccHHHHHhhccCCCCch-----hhhhhhhhccch
Confidence            3567778888888888876655221 1   234667788899999999999995432222221     234445544444


Q ss_pred             hHHHH--------------------h--HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHH
Q psy5702         108 EMVRL--------------------L--PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM  165 (235)
Q Consensus       108 ~~~~~--------------------l--~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  165 (235)
                      +....                    +  -+.+|+..|-...+...+++|.+++.            ++|..|+++++..+
T Consensus       118 sLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------------~vls~Av~ynhRkI  185 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------------IVLSQAVKYNHRKI  185 (192)
T ss_pred             hHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------------HHHHHHHHhhHHHH
Confidence            33211                    1  56677777887777777777776432            56778888888777


Q ss_pred             HHHHHH
Q psy5702         166 VRLLLS  171 (235)
Q Consensus       166 v~~Ll~  171 (235)
                      +.+++.
T Consensus       186 L~yfi~  191 (192)
T PF03158_consen  186 LDYFIR  191 (192)
T ss_pred             HHHhhc
Confidence            777653

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505|consensus

Probab=96.87  E-value=0.0017  Score=53.41  Aligned_cols=63  Identities=27%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          39 YIDAVAYCLEKFSHGPA------PKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        39 ~~~~v~~li~~~~~~~~------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      -...+.+|.++ +...|      ..+....|+||+|+..|..+++.++|+.|+|+..+|..|.||+..+.
T Consensus       403 ~p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            36677777776 43333      23455788999999999999999999999999999999999998755

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.85  E-value=0.0081  Score=44.70  Aligned_cols=52  Identities=21%  Similarity=0.260  Sum_probs=41.8

Q ss_pred             cCCHHHHHHHHHcC-CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         121 KGCVEMVRLLLSYG-ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       121 ~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      ..+..++++++++| +++|..-. .  ...|.|.|.-|+++++.+++.+|+++||-
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~-~--~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQ-K--VNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhh-c--cCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            44677899999998 56654431 1  16899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.26  E-value=0.068  Score=38.65  Aligned_cols=130  Identities=22%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh-----------HHHHHHHcCCHHHH---
Q psy5702          62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------PLHDAAEKGCVEMV---  127 (235)
Q Consensus        62 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------~l~~a~~~~~~~~~---  127 (235)
                      ...+..|++.+-..+++..-+...+-   -....+.+-.|++..+.++++|+           .+..|....+.+..   
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslG  123 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLG  123 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHH
Confidence            34567788888888887775543221   12345677889999999999999           57788877776653   


Q ss_pred             -HHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         128 -RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       128 -~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                       +.+..+...-...+..    ..-..-|..|+..|....+.-.+.+|.+++.      ++|..|++..+++++.+++.
T Consensus       124 Y~l~~~~~~~~~~~d~~----~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  124 YKLLFNRMMSEHNEDPT----SLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHhhcccccccCHH----HHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence             2222221111000000    0112457899999999999999999988764      78999999999999998764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.18  E-value=0.15  Score=31.49  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC
Q psy5702         114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY  172 (235)
Q Consensus       114 ~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~  172 (235)
                      .+..|+..|+.|+++.+++.+ .++            ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456788889999999998765 222            2558999999999999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.25  E-value=0.18  Score=31.15  Aligned_cols=48  Identities=23%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      ...+..|+..|+.++++.+++....  +      ..++..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4578999999999999999976321  1      4579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.84  E-value=0.89  Score=34.25  Aligned_cols=113  Identities=18%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             chHHHHHHHhhhhceeEeecC-CCCcHHHHHHHcCCHHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHhc--CCHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRSWVINKH-HGETPLHRAARLGYIDAVAYCLEKFSHGP--APKDNAGYTPLHEAASH--GWLDIARL   79 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~-~g~~~L~~A~~~~~~~~v~~li~~~~~~~--~~~~~~g~t~L~~A~~~--~~~~~v~~   79 (235)
                      ++.|+|...+....+-.++|. +-.+++.+|+..+..+++-+|+.+.....  -.....+.--+.+++..  .+..++++
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~  235 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEY  235 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHH
Confidence            445555555444444444443 34567888888888888888887633111  11222344456666664  46678888


Q ss_pred             HHhcC-CCCCC---CCCCCCcHHHHHHHhCChhHHHHhHHHH
Q psy5702          80 LLMYG-ADPSD---SAIGGIRPLHDAAEKGCVEMVRLLPLHD  117 (235)
Q Consensus        80 Ll~~g-~~~~~---~~~~g~t~l~~a~~~~~~~~~~~l~l~~  117 (235)
                      .++.| +++|.   +..+|.|.|.-|..+++.+++.+|.-+-
T Consensus       236 Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  236 FINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             HHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            88886 34443   4567888888888888888888774333

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-21
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-19
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-18
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-16
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-16
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-14
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		9e-14
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-13
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-12
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-12
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-12
1uoh_A	226	Human Gankyrin Length = 226		7e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-12
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		9e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-10
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		5e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		7e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		8e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		6e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		6e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 23/183 (12%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G TPLH AAR G+++ V   LEK +   A     G+TPLH AA +G + +A LLL   A 
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171
Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
           P+ +   G+ PLH A     +++V+LL                PLH AA++  VE+ R L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
           L YG      S           PLH AA++G  EMV LLLS  A+  L + +G TPL + 
Sbjct: 232 LQYGGSANAESVQGV------TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Query: 191 SDE 193
           + E
Sbjct: 286 AQE 288

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 80/152 (52%), Gaps = 22/152 (14%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
           L EAA +G  D  + LL  GADP+ S   G  PLH AAE G  E+V+LL           
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
                PLH AAE G  E+V+LLLS GADP          S    PLH AAE G  E+V+L
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD------SDGRTPLHYAAENGHKEIVKL 121
Query: 169 LLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           LLS GADP  +   G TPL +  +    ++++
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/157 (42%), Positives = 80/157 (50%), Gaps = 25/157 (15%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
           L EAA +G  D  + LL  GAD + S   G  PLH AAE G  E+V+LL           
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
                PLH AAE G  E+V+LLLS GADP          S    PLH AAE G  E+V+L
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD------SDGKTPLHLAAENGHKEVVKL 121
Query: 169 LLSYGADPLLASYAGHTPLSIT---SDETTRKLLQYH 202
           LLS GADP  +   G TPL +     +E   KLL+  
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 78/154 (50%), Gaps = 27/154 (17%)
Query: 67  EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------- 113
           EAA +G  D  + L+  GAD + S   G  PLH AAE G  E+V+LL             
Sbjct: 10  EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 114 ---PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLL 169
              PLH AAE G  E+V+LL+S GAD       V       R PLH AAE G  E+V+LL
Sbjct: 70  GRTPLHHAAENGHKEVVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 170 LSYGADPLLASYAGHTPLSIT---SDETTRKLLQ 200
           +S GAD   +   G TPL +     +E   KLL+
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
           +G TPLH AAR G+++ V   LE  +   A KD  G TPLH AA +G L++ +LLL  GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 86  DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
           D +     G  PLH AA  G +E+V+LL                PLH AA  G +E+V+L
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 130 LLSYGA 135
           LL  GA
Sbjct: 120 LLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
           G TPLH AA +G L++ +LLL  GAD +     G                   PLH AA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-----------------RTPLHLAAR 44
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLA 179
            G +E+V+LLL  GAD       V       R PLH AA  G +E+V+LLL  GAD    
Sbjct: 45  NGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 180 SYAGHTPLSITS 191
              G TPL + +
Sbjct: 98  DKNGRTPLHLAA 109

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  DN GYTPLH AAS+G L+I  +LL  GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
           S + GI PLH AA  G +E+V +L                 L +GAD         + + 
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVL-----------------LKHGAD------VNAYDND 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
              PLH AA+ G +E+V +LL +GAD       G T   I+ D     L +
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  DN G TPLH AA  G L+I  +LL +GAD   
Sbjct: 17  KLLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADV-- 73
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                     DAA+     +    PLH AA  G +E+V +LL YGAD         F   
Sbjct: 74  ----------DAAD-----VYGFTPLHLAAMTGHLEIVEVLLKYGAD------VNAFDMT 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
            S PLH AA++G +E+V +LL YGAD       G T   I+ D     L
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
            L EAA  G  D  R+L+  GAD + +   GI PLH     G +E++ +L          
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                 PLH AA +G +E+V +LL YGAD     Y  Y       PLH AAE G +E+V 
Sbjct: 77  DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY------TPLHLAAEDGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKL 198
           +LL YGAD       G T   I+ D     L
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 24/153 (15%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
           L EAA +G  D  + L+  GAD + S   G  PLH AA++G  E+V+LL           
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVR 167
                PLH AA++G  E+V+LL+S GAD       V       R PLH AA++G  E+V+
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGAD-------VNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           LL+S GAD   +   G TPL +  +    ++++
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 24  KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
            H GET LH A+  G I +V Y L+  S  P  KD+AG+TPLHEA +HG L +  LLL +
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
            A  + +      PLHDAA+ G V++V+LL L   A +  V +  L
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLL-LSYGASRNAVNIFGL 110

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
           G T LH A+  G +     LL  G+DP+     G  PLH+A   G +++V LL  H A  
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
                       Y  D                PLHDAA+ G V++V+LLLSYGA     +
Sbjct: 70  NTT--------GYQND---------------SPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 181 YAGHTPLSITSDETTRKLL 199
             G  P+  T DE+ + LL
Sbjct: 107 IFGLRPVDYTDDESMKSLL 125

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 22/153 (14%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
            L EAA  G  D  R+L+  GAD +     G  PLH AA  G +E+V +L          
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                 PLH AA++G +E+V +LL YGAD           ++ S PLH AA+ G +E+V 
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD------TIGSTPLHLAADTGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           +LL YGAD       G T   I+ D     L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 96/230 (41%), Gaps = 30/230 (13%)
Query: 6   LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPL 65
            G +  D+       V+   + +  L  AAR G  + +   L   +      D    TPL
Sbjct: 3   FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 66  HEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVE 125
           H AA +  + I +LLL +GAD      GG+ PLH+A   G  E+  LL  H A    CV 
Sbjct: 63  HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA----CVN 118
Query: 126 MVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHT 185
            + L                       PLH+AA K  VE+  LLLS+GADP L +  G +
Sbjct: 119 AMDLW-------------------QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKS 159
Query: 186 PLSITSDETTRKLLQYHLADVRGHE----APKWDFAGPASCFDKQMVGYE 231
            + +      R+ L Y   + +GH     A + D A        +++ ++
Sbjct: 160 AVDMAPTPELRERLTY---EFKGHSLLQAAREADLAKVKKTLALEIINFK 206

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 22/153 (14%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
            L EAA  G  D  R+L+  GAD + +   G  PLH AA+ G +E+V +L          
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                 PLH AA+ G +E+V +LL +GAD     Y  +       PLH AA  G +E+V 
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGF------TPLHLAAYDGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           +LL YGAD       G T   I+ D     L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD-PS 88
            L  AAR G  D V   +   +   A  D+ G+TPLH AA  G L+I  +LL  GAD  +
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
           D ++G                  + PLH AA++G +E+V +LL  GAD     +  +   
Sbjct: 76  DDSLG------------------VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGF--- 114
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
               PLH AA  G +E+V +LL +GAD       G T   I+ D     L
Sbjct: 115 ---TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
           +G TPLH AAR G+++ V   LE  +   A KD  G TPLH AA +G L++ +LLL  GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 86  DPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           D +     G  PLH AA  G +E+V+LL
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 56/115 (48%), Gaps = 25/115 (21%)
Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
           G TPLH AA +G L++ +LLL  GAD +     G                   PLH AA 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-----------------RTPLHLAAR 44
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGA 174
            G +E+V+LLL  GAD       V       R PLH AA  G +E+V+LLL  GA
Sbjct: 45  NGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSY 172
           PLH AA  G +E+V+LLL  GAD       V       R PLH AA  G +E+V+LLL  
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 173 GADPLLASYAGHTPLSITS 191
           GAD       G TPL + +
Sbjct: 58  GADVNAKDKNGRTPLHLAA 76

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           L  AAR G  D V   +   +   A KD  GYTPLH AA  G L+I  +LL  GAD +  
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 91  AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
              G  PLH AA +G +E+V                  +LL  GAD        Y     
Sbjct: 65  DKDGYTPLHLAAREGHLEIVE-----------------VLLKAGADVNAKDKDGY----- 102
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
             PLH AA +G +E+V +LL  GAD       G TP  +  D     + +
Sbjct: 103 -TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAE 151

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
           L +AA  G  + VR+L++ GAD        Y       PLH AA +G +E+V +LL  GA
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKAGA 59
Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHL---ADVRGHEAPKW 214
           D       G+TPL + + E   ++++  L   ADV   +   +
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------- 113
           L EAA  G  D  R+L+  GAD +     G  PLH AA  G  E+V +L           
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 114 -----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRL 168
                PLH AA+ G +E+V +LL YGAD  + +   Y L+    PLH AA++G +E+V +
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGAD--VNAQDAYGLT----PLHLAADRGHLEIVEV 131
Query: 169 LLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           LL +GAD       G T   I+ D     L +
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A +D  G+TPLH AA  G L+I  +LL  GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN- 74
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                             + + + PLH AA +G +E+V +LL  GAD + AS +  F   
Sbjct: 75  ----------------AKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGF--- 114
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY 201
              PLH AA++G +E+V +LL  GAD       G T   I+ D     L + 
Sbjct: 115 --TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A KD  GYTPLH AA  G L+I  +LL  GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
               G  PLH AA +G +E+V                  +LL  GAD        Y    
Sbjct: 76  KDKDGYTPLHLAAREGHLEIVE-----------------VLLKAGADVNAKDKDGYT--- 115
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
              PLH AA +G +E+V +LL  GAD       G T   I+ D     L +
Sbjct: 116 ---PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +AA  G  + VR+L++ GAD        Y       PLH AA +G +E+V +LL  G
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDKDGYT------PLHLAAREGHLEIVEVLLKAG 70
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHL---ADVRGHEAPKW 214
           AD       G+TPL + + E   ++++  L   ADV   +   +
Sbjct: 71  ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 114

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           T LH A   G+ + V + L+        KD+AG++PLH AAS G  +I + LL  GA  +
Sbjct: 43  TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLS 132
                G  PLH AA K   E+  +L                 +H AA KG ++M+ +LL 
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 161
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
           Y A   +        +  + PLH A ++  VE  +LL+S GA   + +    TPL +
Sbjct: 162 YKASTNIQD------TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           T LH A   G+ + V + L+        KD+AG++PLH AAS G  +I + LL  GA  +
Sbjct: 42  TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLS 132
                G  PLH AA K   E+  +L                 +H AA KG ++M+ +LL 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 160
Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
           Y A   +        +  + PLH A ++  VE  +LL+S GA   + +    TPL +
Sbjct: 161 YKASTNIQD------TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A +D++G TPLH AA  G L+I  +LL +GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN- 74
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                      AA+K     +   PLH AA  G +E+V +LL  GAD  + +   Y  + 
Sbjct: 75  -----------AADK-----MGDTPLHLAALYGHLEIVEVLLKNGAD--VNATDTYGFT- 115
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
              PLH AA+ G +E+V +LL YGAD       G T   I+ D     L +
Sbjct: 116 ---PLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           T LH A   G+ + V + L+        KD+AG++PLH AAS G  +I + LL+ GA   
Sbjct: 42  TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-- 98
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
                    ++   + GC       PLH AA K   E+  +LL  GA+P    +      
Sbjct: 99  ---------VNAVNQNGCT------PLHYAASKNRHEIAVMLLEGGANPDAKDH------ 137
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
             +  +H AA KG ++MV +LL Y A   +    G+TPL +  DE
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           T LH A   G+ + V + L+        KD+AG++PLH AAS G  +I + LL+ GA   
Sbjct: 42  TALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH-- 98
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
                    ++   + GC       PLH AA K   E+  +LL  GA+P    +      
Sbjct: 99  ---------VNAVNQNGCT------PLHYAASKNRHEIAVMLLEGGANPDAKDH------ 137
Query: 149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
             +  +H AA KG ++MV +LL Y A   +    G+TPL +  DE
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
           TPLH AA +  + +   LL +GAD      GG+ PLH+A   G  E+  LL  H     G
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 98
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
            V  V  L  +                   PLH+AA KG  E+ +LLL +GADP   +  
Sbjct: 99  AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 140
Query: 183 GHTPLSITSDETT 195
           G+TPL +  D  T
Sbjct: 141 GNTPLDLVKDGDT 153

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
           TPLH AA +  + +   LL +GAD      GG+ PLH+A   G  E+  LL  H     G
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 100
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
            V  V  L  +                   PLH+AA KG  E+ +LLL +GADP   +  
Sbjct: 101 AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 142
Query: 183 GHTPLSITSDETT 195
           G+TPL +  D  T
Sbjct: 143 GNTPLDLVKDGDT 155

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
           TPLH AA +  + +   LL +GAD      GG+ PLH+A   G  E+  LL  H     G
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----G 102
Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
            V  V  L  +                   PLH+AA KG  E+ +LLL +GADP   +  
Sbjct: 103 AVVNVADLWKF------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRD 144
Query: 183 GHTPLSITSDETT 195
           G+TPL +  D  T
Sbjct: 145 GNTPLDLVKDGDT 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AA  G  D V   +   +   A  DN G TPLH AA++G L+I  +LL  GAD + 
Sbjct: 9   KLLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
           S   GI PLH AA  G +E+V +L                 L +GAD      A +    
Sbjct: 68  SDSAGITPLHLAAYDGHLEIVEVL-----------------LKHGADVNAYDRAGW---- 106
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
              PLH AA  G +E+V +LL +GAD       G T   I+ ++    L
Sbjct: 107 --TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +AA  G  + VR+L++ GAD      A     L   PLH AA  G +E+V +LL  G
Sbjct: 9   KLLEAAAAGQDDEVRILMANGADV----NATDDNGLT--PLHLAAANGQLEIVEVLLKNG 62
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQY---HLADVRGHEAPKW 214
           AD   +  AG TPL + + +   ++++    H ADV  ++   W
Sbjct: 63  ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW 106

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 72/164 (43%), Gaps = 24/164 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A KD  GYTPLH AA  G L+I  +LL  GAD + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
               G                   PLH AA +G +E+V +LL  GAD        Y    
Sbjct: 64  KDKDG-----------------YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT--- 103
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
              PLH AA +G +E+V +LL  GAD       G TP  +   E
Sbjct: 104 ---PLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  D +G TPLH AA++G L+I  +LL +GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                            ++++   PLH AA  G +E+V +LL +GAD      AV   + 
Sbjct: 75  ----------------AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV----NAVD--TW 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
              PLH AA  G +E+V +LL +GAD       G T   I+ D     L
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           GA+  ++    H+G TPLH AA +G+++ V   L   +   A   N G TPLH AAS G 
Sbjct: 25  GADANAY---DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGH 80
Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
           L+I  +LL YGAD +     GI PL+ AA  G +E+V +L  H A
Sbjct: 81  LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  D+ G TPLH AA+ G L+I  +LL  GAD + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGADANA-YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN- 62
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                            V+     PLH AA  G +E+V +LL YGAD           + 
Sbjct: 63  ----------------AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD------AT 100
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQ 200
              PL+ AA  G +E+V +LL +GAD       G T   I+ D   E   ++LQ
Sbjct: 101 GITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  D +G TPLH AA++G L+I  +LL +GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVN- 74
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                            +++    PLH AA  G +E+V +LL +GAD      AV   + 
Sbjct: 75  ----------------AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV----NAVD--TW 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
              PLH AA  G +E+V +LL +GAD       G T   I+ D     L
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A  DN G TPLH AA  G L+I  +LL +GAD   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
           S + G  PLH AA  G +E+V +L L + A+   ++                      S 
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVL-LKNGADVNAMD----------------------SD 112
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
              PLH AA+ G +E+V +LL +GAD       G T   I+ D     L +
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G T LH AA+ G+ + V Y L         +D+ G+TP+  A  +  +D+ +LLL  G+D
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF 146
            +         + D  E  C        LH AA  GCV++  +LL+   D  L +  ++ 
Sbjct: 137 IN---------IRDNEENIC--------LHWAAFSGCVDIAEILLAAKCD--LHAVNIHG 177
Query: 147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
            S    PLH AA +   + V L LS  +D  L +  G TPL   S
Sbjct: 178 DS----PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
            L EAA  G  D  R+L+  GAD + + + G  PLH AA  G +E+V +L          
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                 PLH AA  G +E+V +LL  GAD                PLH AA +G +E+V 
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD------DNGITPLHLAANRGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           +LL YGAD       G T   I+ +     L +
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKD---NAGYTPLHEAASHGWLDIARLLLMY 83
           G+TPLH A   G + AV   +  F  G    D   N   TPLH A       + RLL+  
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 84  GADPSDSAIGG---------------IRPLHDAAEKGCVEMVR-----LLPLHDAAEKGC 123
           GA P      G               +R L D+A  G +++       L  LH A    C
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
            E V+LLL  GAD      AV   S  S PL  A E   + MV+LLL +GA+     Y+G
Sbjct: 129 QETVQLLLERGAD----IDAVDIKSGRS-PLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 184 HTPL 187
            + L
Sbjct: 184 SSAL 187

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G TPLH AA+ G+ + V   L K +   A +   G TPLH AA +G  +I +LLL  GAD
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL 113
            +  +  G  P H A + G  E+V+LL
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           PLH+AA+ G  E V+ LLS GAD    S         + PLH AA+ G  E+V+LLL+ G
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKD------GNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHLADVRG 208
           AD    S  G+TP  +       ++++  L D +G
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVK--LLDAKG 98

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           L +A +   +D V   LE  ++    ++  G+TPLH A      DI  LLL +GADP   
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 91  AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
              G  P   AA  G V++++L                    +AA  G V+ ++ L   G
Sbjct: 89  KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 135 ADPLLASYAV----YFLSLPSRPLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLS- 188
           A+  L               +  L DAAEKG VE++++LL   GAD       G   L  
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208
Query: 189 --ITSD----ETTRKLLQYHLADV 206
             ++SD    E    LL  H ADV
Sbjct: 209 ALLSSDDSDVEAITHLLLDHGADV 232

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           L +A +   +D V   LE  ++    ++  G+TPLH A      DI  LLL +GADP   
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 91  AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
              G  P   AA  G V++++L                    +AA  G V+ ++ L   G
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 135 ADPLLASYAV----YFLSLPSRPLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLS- 188
           A+  L               +  L DAAEKG VE++++LL   GAD       G   L  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 189 --ITSD----ETTRKLLQYHLADVR 207
             ++SD    E    LL  H ADV 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVN 213

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EA   G  D  R+L+  GAD        +  + DA          + PLH AA++G 
Sbjct: 17  KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL +GAD   +       S    PLH AA  G +E+V +LL YGAD       G
Sbjct: 60  LEIVEVLLKHGADVNASD------SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
            T   I+ D     L
Sbjct: 114 KTAFDISIDNGNEDL 128

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +A   G  + VR+L++ GAD      A         PLH AA++G +E+V +LL +G
Sbjct: 17  KLLEATRAGQDDEVRILMANGADVNAMDDA------GVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
           AD   +   G TPL + +     E    LL+Y  ADV   +
Sbjct: 71  ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQD 110

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------- 113
            L EAA  G  D  R+L+  GAD +     G  PLH AA  G +E+V +L          
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 114 ------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
                 PL  AA  G +E+V +LL  GAD        +       PLH AA  G +E+V 
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH------TPLHLAAMFGHLEIVE 130
Query: 168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQY 201
           +LL  GAD       G T   I+ D     L + 
Sbjct: 131 VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 5   SLGDTVEDVGAEVRSWVINKHH--GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
           S GDT E +    R   IN  +  G T LH+A     +D V + +E  ++   P DN G+
Sbjct: 49  SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGW 107
Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH-----DAAEKGCVEMVRLLPLHD 117
            PLH AAS G+LDIA  L+  GA        G  PL         E    E+ R     +
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 118 AAEKGCVEMVRLLLSYGADPLLASYA--VYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
           AA K   E  R++L      L + +   V         LH AA KG  E+++LL+    D
Sbjct: 168 AARK---EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 176 PLLASYAGHTPL 187
             +  Y G TPL
Sbjct: 225 VNIKDYDGWTPL 236

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EA   G  D  R+L+  GAD        +  + DA          + PLH AA++G 
Sbjct: 17  KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
           +E+V +LL +GAD       V    +  R PLH AA  G +E+V +LL YGAD       
Sbjct: 60  LEIVEVLLKHGAD-------VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 183 GHTPLSITSDETTRKL 198
           G T   I+ D     L
Sbjct: 113 GKTAFDISIDNGNEDL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EA   G  D  R+L+  GAD        +  + DA          + PLH AA++G 
Sbjct: 17  KLLEATRAGQDDEVRILMANGAD--------VNAMDDAG---------VTPLHLAAKRGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
           +E+V +LL +GAD       V    +  R PLH AA  G +E+V +LL YGAD       
Sbjct: 60  LEIVEVLLKHGAD-------VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Query: 183 GHTPLSITSDETTRKL 198
           G T   I+ D     L
Sbjct: 113 GKTAFDISIDNGNEDL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +A   G  + VR+L++ GAD      A         PLH AA++G +E+V +LL +G
Sbjct: 17  KLLEATRAGQDDEVRILMANGADVNAMDDA------GVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADVRGHE 210
           AD   +   G TPL + +     E    LL+Y  ADV   +
Sbjct: 71  ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EAA  G  D  R+L+  GAD +                  ++   L PLH AA+ G 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-----------------ALDEDGLTPLHLAAQLGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL YGAD           +    PLH AA +G +E+V +LL +GAD       G
Sbjct: 60  LEIVEVLLKYGADVNAED------NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
            T   I+ D     L
Sbjct: 114 KTAFDISIDNGNEDL 128

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-RPLHDAAEKGCVEMVRLLLSY 172
            L +AA  G  + VR+L++ GAD       V  L      PLH AA+ G +E+V +LL Y
Sbjct: 17  KLLEAARAGQDDEVRILMANGAD-------VNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 173 GADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH 209
           GAD       G TPL              HLA +RGH
Sbjct: 70  GADVNAEDNFGITPL--------------HLAAIRGH 92

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 37/161 (22%)
Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP-- 114
           ++N   TPLH A      +IA  LL  G DP      G  PLH A E+GC+  V +L   
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 115 --------------------LHDAAEKGCVEMVRLLLSYGAD-----PLLASYAVYFLSL 149
                               LH A+  G + +V LL+S GAD     P     A      
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA------ 154
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT 190
               LH A +    ++V LLL  GAD    +Y G++P  +T
Sbjct: 155 ----LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 41/182 (22%)
Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP-- 114
           ++N   TPLH A      +IA  LL  G DP      G  PLH A E+GC+  V +L   
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 115 --------------------LHDAAEKGCVEMVRLLLSYGAD-----PLLASYAVYFLSL 149
                               LH A+  G + +V LL+S GAD     P     A      
Sbjct: 98  CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA------ 151
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSIT----SDETTRKLLQYHLAD 205
               LH A +    ++V LLL  GAD    +Y G++P  +T    S    ++L Q  L +
Sbjct: 152 ----LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207
Query: 206 VR 207
           ++
Sbjct: 208 LQ 209

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 31/183 (16%)
Query: 62  YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
           ++P+HEAA HG     R L+  G   +      + PLH+A   G +  V++L        
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 114 --------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
                   PL +A   G  + V LLL +GA       +V   S  + P+H+AA +G VE 
Sbjct: 64  GVTADWHTPLFNACVSGSWDCVNLLLQHGA-------SVQPESDLASPIHEAARRGHVEC 116
Query: 166 VRLLLSYGAD-PLLASYAGHTPLSITSDETTRKLLQYHL---ADV---RGHEAPKWDFAG 218
           V  L++YG +     S+ G TPL +  +   R  ++  L   ADV   +G ++P    A 
Sbjct: 117 VNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVAR 175
Query: 219 PAS 221
            AS
Sbjct: 176 TAS 178

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 62  YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
           ++P+HEAA HG     R L+  G   +      + PLH+A   G +  V++L        
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 114 --------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
                   PL +A   G  + V LLL +GA       +V   S  + P+H+AA +G VE 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGA-------SVQPESDLASPIHEAARRGHVEC 172
Query: 166 VRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHL---ADV---RGHEAP 212
           V  L++YG +         TPL +  +   R  ++  L   ADV   +G ++P
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 65/169 (38%), Gaps = 25/169 (14%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +  P   D  G +PLH AA +G      +LL  G     
Sbjct: 5   KLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--- 59
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                     DA  K     V   PLH AA +G   +V +LL +GAD            L
Sbjct: 60  ---------RDARTK-----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDM------L 99
Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKL 198
               LH A E    E+V LL+ YGAD    S    T   I+ D     L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 42  AVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
           + A  LE    G +P  +D +G +P+H+AA  G+LD  ++L+ +GAD +     G  P+H
Sbjct: 53  STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 112
Query: 100 DAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
            A ++G   +V  L               PL  A ++G  ++V +L  +   PL
Sbjct: 113 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL 166

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
           D  G+TPL  AA+HG + +   LL  GADP     G    L  A  KG  ++V++L    
Sbjct: 49  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
                       PL  A     V+ V++LL  GADP + + + Y
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 152

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
           D  G+TPL  AA+HG + +   LL  GADP     G    L  A  KG  ++V++L    
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
                       PL  A     V+ V++LL  GADP + + + Y
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
            PLH A + G+   V  CL   +  P  KD +G TPL  A S G  ++  LLL +GA  +
Sbjct: 121 VPLHLACQQGHFQVVK-CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
            S   G   LH+A  +  V +V LL LH A+
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
           G +PLH AA HG  D+  LLL +GA+       G R    A           +PLH A +
Sbjct: 86  GSSPLHVAALHGRADLIPLLLKHGAN------AGARNADQA-----------VPLHLACQ 128
Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
           +G  ++V+ LL   A P     +       + PL  A   G  E+V LLL +GA    ++
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLS------GNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 181 YAGHTPL 187
             G+T L
Sbjct: 183 NKGNTAL 189

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
           D  G+TPL  AA+HG + +   LL  GADP     G    L  A  KG  ++V++L    
Sbjct: 31  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY 145
                       PL  A     V+ V++LL  GADP + + + Y
Sbjct: 91  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 134

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 42  AVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
           + A  LE    G +P  +D +G +P+H+AA  G+LD  ++L+ +GAD +     G  P+H
Sbjct: 47  STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Query: 100 DAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLL 130
            A ++G   +V  L               PL  A ++G  ++V +L
Sbjct: 107 LAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 30  PLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD 89
            L  AAR G  D V   +   +   A KD  G TPL+ A +HG L+I  +LL  GAD + 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN- 74
Query: 90  SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
                            V+ +   PLH AA  G +E+  +LL +GAD
Sbjct: 75  ----------------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 26/140 (18%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EAA  G  D  R+L+  GAD +                   +   L PL+ A   G 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-----------------AKDEYGLTPLYLATAHGH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL  GAD + A  A+ F      PLH AA  G +E+  +LL +GAD       G
Sbjct: 60  LEIVEVLLKNGAD-VNAVDAIGF-----TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSIT---SDETTRKLLQ 200
            T   I+    +E   ++LQ
Sbjct: 114 KTAFDISIGNGNEDLAEILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EAA  G  D  R+L+  GAD +            A +K     V L PLH AA    
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN------------AEDK-----VGLTPLHLAAMNDH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL  GAD           ++   PLH  A  G +E+V +LL +GAD       G
Sbjct: 60  LEIVEVLLKNGAD------VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
            T   I+ D     L
Sbjct: 114 KTAFDISIDNGNEDL 128

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASH 71
           GA+V +   N   G TPLH AA   +++ V   L+   HG      DN G TPLH AA  
Sbjct: 37  GADVNA---NDRKGNTPLHLAADYDHLEIVEVLLK---HGADVNAHDNDGSTPLHLAALF 90
Query: 72  GWLDIARLLLMYGADPS 88
           G L+I  +LL +GAD +
Sbjct: 91  GHLEIVEVLLKHGADVN 107

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EAA  G  D  R+L+  GAD + +             KG        PLH AA+   
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAND-----------RKGNT------PLHLAADYDH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL +GAD           +  S PLH AA  G +E+V +LL +GAD       G
Sbjct: 60  LEIVEVLLKHGADVNAHD------NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
            T   I+ D     L
Sbjct: 114 KTAFDISIDNGNEDL 128

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
           T LH AA    ID V Y + K +       +   TPLH A   G L +   L+ YGADPS
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG-CVEMVRLLL 131
                G   +H AA+ G   +V  L                PL  AA +   V+  RLLL
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
           ++     L     Y     +  LH A   G   ++ LLL  GA+    +  G + L +  
Sbjct: 164 TFNVSVNLGDK--YH---KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 192 DETTRKLLQYHLADVR 207
                 ++  HL + R
Sbjct: 219 QRKNVWMIN-HLQEAR 233

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           +H+ A  G +D +   L K  +     D  G+TPL  A++ G ++  R LL +GADP   
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP--- 62
Query: 91  AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
                   H  A++      R   L  A+  G  ++V LLL    D  +  +        
Sbjct: 63  --------HILAKE------RESALSLASTGGYTDIVGLLLERDVDINIYDWN------G 102
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
             PL  A     V+ V  LL+ GAD    + +G+TP+ +      RK+ Q
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
           L  AA+ G ++  R LL  GADP+     G RP+        V M+           G  
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ-------VMMM-----------GSA 57
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
           ++  LLL +GA+P  A  A       +RP+HDAA +G ++ + +L   GA   +    G 
Sbjct: 58  QVAELLLLHGAEPNCADPATL-----TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR 112
Query: 185 TPLSITSDETTRKLLQY 201
            P+ +  ++  R + +Y
Sbjct: 113 LPVDLAEEQGHRDIARY 129

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  KD  G+  +H+AA  G+LD  + LL + AD +     G  PLH AA++G + +V  L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
             H A+  G
Sbjct: 123 VKHTASNVG 131

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           +H+ A  G +D +   L K  +     D  G+TPL  A++ G ++  R LL +GADP   
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 91  AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
           A      L  A+  G  ++V LL   D         + +    G  PLL  YAV+     
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVD-------INIYDWNGGTPLL--YAVH----- 111
Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
                       V+ V  LL+ GAD    + +G+TP+ +      RK+ Q
Sbjct: 112 ---------GNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  KD  G+  +H+AA  G+LD  + LL + AD +     G  PLH AA++G + +V  L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
             H A+  G
Sbjct: 123 VKHTASNVG 131

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           GA+V +   N + G TPLH AA LG+++ V   L+  +   A   N G TPLH AA    
Sbjct: 37  GADVNA---NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADH 92
Query: 74  LDIARLLLMYGADPS 88
           L+I  +LL +GAD +
Sbjct: 93  LEIVEVLLKHGADVN 107

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 64  PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC 123
            L EAA  G  D  R+L   GAD + +   G  PLH AA      M+           G 
Sbjct: 17  KLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAA------ML-----------GH 59
Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           +E+V +LL  GAD           +    PLH AA    +E+V +LL +GAD       G
Sbjct: 60  LEIVEVLLKNGADVNATG------NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 184 HTPLSITSDETTRKL 198
            T   I+ D     L
Sbjct: 114 KTAFDISIDNGNEDL 128

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  KD  G+  +H+AA  G LD  + LL + AD +     G  PLH AA++G + +V  L
Sbjct: 63  PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
             H A+  G
Sbjct: 123 VKHTASNVG 131

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL 169
           PLH AA+ G +E++  LL  GAD          ++ P +    PL  A  +G V  V+LL
Sbjct: 38  PLHYAADCGQLEILEFLLLKGAD----------INAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 170 LSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           LS GAD  +    G T L  T ++  + LLQ
Sbjct: 88  LSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 42  AVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA 101
           AVA  L K    P  +D +G +P+H+AA  G+LD  ++L+ +GAD +     G  P+H A
Sbjct: 57  AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Query: 102 AEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
             +G   +V  L               PL  A ++G   ++ +L  +   P+
Sbjct: 117 IREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 168

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 42  AVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA 101
           AVA  L K    P  +D +G +P+H+AA  G+LD  ++L+ +GAD +     G  P+H A
Sbjct: 55  AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Query: 102 AEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPL 138
             +G   +V  L               PL  A ++G   ++ +L  +   P+
Sbjct: 115 IREGHSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 166

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 22  INKHH--GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA-----ASHGWL 74
           +NKH+  G   L  AA  G+ID V   LE        +++ GYT L EA      +  + 
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 75  DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
           DI +LL+  GAD S     G   +  A +KG  E+ ++L  ++
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  KD  G+  +H+AA  G+LD  + LL   AD +     G  PLH AA++G + +V  L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
             H A+  G
Sbjct: 123 VKHTASNVG 131

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 54  PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           P  KD  G   +H+AA  G+LD  + LL + AD +     G  PLH AA++G + +V  L
Sbjct: 63  PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 114 PLHDAAEKG 122
             H A+  G
Sbjct: 123 VKHTASNVG 131

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 24/199 (12%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
           G  PLH +      +  ++ L K  +       D++G+TP H A S G L++ + L    
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85  ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
             P  + I   G+  LH A  K   E+ + L                PLH AA  G +++
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
           + LL   G   +       +  L     H  AE      V L+  YGA+  L    G   
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLLQYHLAD 205
             +  +E  +K    ++ D
Sbjct: 212 EDVALNEQVKKFFLNNVVD 230

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL 169
           PLH AA+ G +E++  LL  GAD          ++ P +    PL  A  +G V  V+LL
Sbjct: 43  PLHYAADCGQLEILEFLLLKGAD----------INAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 170 LSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
           LS GAD  +    G T    T ++  + LLQ
Sbjct: 93  LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 24/199 (12%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
           G  PLH +      +  ++ L K  +       D++G+TP H A S G L++ + L    
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85  ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
             P  + I   G+  LH A  K   E+ + L                PLH AA  G +++
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
           + LL   G   +       +  L     H  AE      V L+  YGA+  L    G   
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLLQYHLAD 205
             +  +E  +K    ++ D
Sbjct: 212 EDVALNEQVKKFFLNNVVD 230

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +AA  G  + VR+L++ GAD              S PLH AA  G +E+V+LLL  G
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAKDKN------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQY 201
           AD       G T   I+ D     L + 
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEI 108

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +AA  G  + VR+L++ GAD              S PLH AA  G +E+V+LLL  G
Sbjct: 9   KLLEAARAGQDDEVRILMANGADVAAKDKN------GSTPLHLAARNGHLEVVKLLLEAG 62
Query: 174 ADPLLASYAGHTPLSITSDETTRKL 198
           AD       G T   I+ D     L
Sbjct: 63  ADVNAQDKFGKTAFDISIDNGNEDL 87

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 24/193 (12%)
Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPK--DNAGYTPLHEAASHGWLDIARLLLMYG 84
           G  PLH +      +  ++ L K  +       D++G+TP H A S G L++ + L    
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 85  ADPSDSAI--GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
             P  + I   G+  LH A  K   E+ + L                PLH AA  G +++
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
           + LL   G   +       +  L     H  AE      V L+  YGA+  L    G   
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPL----FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 187 LSITSDETTRKLL 199
             +  +E  +K  
Sbjct: 212 EDVALNEQVKKFF 224

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17  VRSWVINKH--------HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
           VR W+ N          HG +PLH A R G    V   + + +      +    TPLH A
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLA 79
Query: 69  ASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
           ASHG  DI + LL Y AD +     G  PLH
Sbjct: 80  ASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17  VRSWVINKH--------HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEA 68
           VR W+ N          HG +PLH A R G    V   + + +      +    TPLH A
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLA 74
Query: 69  ASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
           ASHG  DI + LL Y AD +     G  PLH
Sbjct: 75  ASHGHRDIVQKLLQYKADINAVNEHGNVPLH 105

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-----RPLHDAAEKGCVEMVRL 168
           PLH A      EMVRLL   GAD          L+ P       PLH A E     ++ L
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGAD----------LNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 169 LLSYGADPLLASYAGHTPL 187
           LL  GADP    Y G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-----RPLHDAAEKGCVEMVRL 168
           PLH A      EMVRLL   GAD          L+ P       PLH A E     ++ L
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGAD----------LNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 169 LLSYGADPLLASYAGHTPL 187
           LL  GADP    Y G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 65  LHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCV 124
           L  AA+ G ++  R LL  GA+P+     G RP+        V M+           G  
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-------VMMM-----------GSA 57
Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
            +  LLL +GA+P  A  A       +RP+HDAA +G ++ + +L   GA   +    G 
Sbjct: 58  RVAELLLLHGAEPNCADPATL-----TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112
Query: 185 TPLSITSDETTRKLLQYHLA---DVRGHEAPKWDFA-GPASCFD 224
            P+ +  +   R + +Y  A     RG    + D A GP+   D
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-38
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-43
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-43
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-41
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-38
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-36
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	5e-37
2rfa_A	232	Transient receptor potential cation channel subfa	4e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-36
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-35
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-27
2etb_A	256	Transient receptor potential cation channel subfam	3e-26
2etb_A	256	Transient receptor potential cation channel subfam	6e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-26
2pnn_A	273	Transient receptor potential cation channel subfa	2e-25
2pnn_A	273	Transient receptor potential cation channel subfa	2e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-07

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  148 bits (377), Expect = 4e-44
 Identities = 53/201 (26%), Positives = 72/201 (35%), Gaps = 31/201 (15%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
              +PLH A   G++  V   L    HG          +TPL  A   G  D   LLL +
Sbjct: 91  DHVSPLHEACLGGHLSCVKILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           GA           P+H+AA +G VE V  L                PL+ A E      V
Sbjct: 148 GASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           + LL  GAD                PLH        E+  LL+ +GAD    +  G  P+
Sbjct: 207 KKLLESGADVNQGKGQ-------DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259

Query: 188 SITSDE--TTRKLLQYHLADV 206
            +   E    +  L+   A +
Sbjct: 260 ELVPPESPLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  146 bits (371), Expect = 3e-43
 Identities = 54/224 (24%), Positives = 83/224 (37%), Gaps = 41/224 (18%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGY 62
                    G+ + S    +    G  P       G            S+       + +
Sbjct: 9   HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLL--------SNPLMGDAVSDW 60

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
           +P+HEAA HG     R L+  G   +      + PLH+A   G +  V++L         
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120

Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
                  PL +A   G  + V LLL +GA     S         + P+H+AA +G VE V
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-------ASPIHEAARRGHVECV 173

Query: 167 RLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
             L++YG +         TPL +  +       +KLL+   ADV
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADV 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 95.3 bits (238), Expect = 1e-23
 Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 68  AASHGWLDIARLLLMYGA-----DPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
            +SH     +  L+  G+     D     + G +P       G   +   L         
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           P+H+AA  G    +R L+S G    + +           PLH+A   G +  V++LL +G
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHV------SPLHEACLGGHLSCVKILLKHG 115

Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           A     +   HTPL         +    LLQ H A V
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASV 151

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.9 bits (206), Expect = 4e-19
 Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 24/119 (20%)

Query: 22  INKH--HGETPLHRAARLGYIDAVAYCLEKFSHGPAP-KDNAGYTPLHEAASHGWLDIAR 78
           I+    H  TPL+ A        V   L     G    +     +PLH        ++A 
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLL---ESGADVNQGKGQDSPLHAVVRTASEELAC 239

Query: 79  LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
           LL+ +GAD       G RP+     +  +  +                   L   GA  
Sbjct: 240 LLMDFGADTQAKNAEGKRPVELVPPESPLAQL------------------FLEREGASL 280

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  147 bits (373), Expect = 4e-44
 Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 39/212 (18%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKF-SHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
            G++ LH A            + +          ++N   TPLH A      +IA  LL 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------------PLHDAAE 120
            G DP      G  PLH A E+GC+  V +L                       LH A+ 
Sbjct: 67  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGADPLL 178
            G + +V LL+S GAD       V      +    LH A +    ++V LLL  GAD   
Sbjct: 127 HGYLGIVELLVSLGAD-------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
            +Y G++P  +T         ++L Q    + 
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLEN 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  143 bits (363), Expect = 1e-42
 Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 36/199 (18%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
           +N   +  +TPLH A      +     L     G  P  +D  G TPLH A   G L   
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALL---GAGCDPELRDFRGNTPLHLACEQGCLASV 94

Query: 78  RLLLMYGADPSDSAI------GGIRPLHDAAEKGCVEMVRLL-----------------P 114
            +L      P   +I       G   LH A+  G + +V LL                  
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
           LH A +    ++V LLL  GAD    +Y  Y       P      +    + + L     
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGY------SPYQLTWGRPSTRIQQQLGQLTL 208

Query: 175 DPLLASYAGHTPLSITSDE 193
           + L          S  ++ 
Sbjct: 209 ENLQMLPESEDEESYDTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.1 bits (209), Expect = 6e-20
 Identities = 30/145 (20%), Positives = 43/145 (29%), Gaps = 31/145 (21%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNA-GYTPLHEAASHGWLDIARLLL 81
           +G T LH A+  GY+  V   +   S G A    ++   G T LH A      D+  LLL
Sbjct: 116 NGHTCLHLASIHGYLGIVELLV---SLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 82  MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLAS 141
             GAD            +    +G        P      +    + + L     + L   
Sbjct: 172 KCGADV-----------NRVTYQGYS------PYQLTWGRPSTRIQQQLGQLTLENLQM- 213

Query: 142 YAVYFLSLPSRPLHDAAEKGCVEMV 166
                L           E    E  
Sbjct: 214 -----LPESEDEESYDTESEFTEFT 233

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (381), Expect = 2e-43
 Identities = 65/226 (28%), Positives = 97/226 (42%), Gaps = 42/226 (18%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
              E   +  A       N    +G TPLH A     +D V   L     G +P      
Sbjct: 160 RVAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLL---PRGGSPHSPAWN 211

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           GYTPLH AA    +++AR LL YG   +  ++ G+ PLH AA++G  EMV LL       
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE 164
                    PLH  A++G V +  +L+ +G      +   Y       PLH A+  G ++
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY------TPLHVASHYGNIK 325

Query: 165 MVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           +V+ LL + AD    +  G++PL   +     +    LL+   A  
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASP 370

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (380), Expect = 4e-43
 Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 32/203 (15%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
             +TPLH AAR+G+ + V   L    +   P     AG+TPLH AA  G ++    LL  
Sbjct: 79  DDQTPLHCAARIGHTNMVKLLL---ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
            A  +     G  PLH AA+ G V +  LL                PLH A     +++V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           +LLL  G  P   ++  Y       PLH AA++  VE+ R LL YG      S  G TPL
Sbjct: 196 KLLLPRGGSPHSPAWNGY------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 249

Query: 188 SITSD----ETTRKLLQYHLADV 206
            + +     E    LL    A+ 
Sbjct: 250 HLAAQEGHAEMVALLLSKQ-ANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (367), Expect = 3e-41
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 30/201 (14%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
           +G TPLH AA+   ++     L    +G +   +   G TPLH AA  G  ++  LLL  
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLL---QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
            A+ +     G+ PLH  A++G V +  +L                PLH A+  G +++V
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           + LL + AD    +   Y       PLH AA++G  ++V LLL  GA P   S  G TPL
Sbjct: 328 KFLLQHQADVNAKTKLGYS------PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381

Query: 188 SITSDE---TTRKLLQYHLAD 205
           +I       +   +L+    +
Sbjct: 382 AIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (366), Expect = 4e-41
 Identities = 64/209 (30%), Positives = 83/209 (39%), Gaps = 34/209 (16%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
                  G TPLH A+ +G++  V   L     G +P   +    TPLH AA  G  ++A
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLL---QRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
           + LL   A  +  A     PLH AA  G   MV+LL                PLH AA +
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
           G VE V  LL   A     +   +       PLH AA+ G V +  LLL   A P  A  
Sbjct: 124 GHVETVLALLEKEASQACMTKKGF------TPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 182 AGHTPLSITSD----ETTRKLLQYHLADV 206
            G TPL +       +  + LL       
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLP-RGGSP 205

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (329), Expect = 8e-36
 Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 47/217 (21%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
            N     G TPLH AA+ G+ + VA  L   S        + +G TPLH  A  G + +A
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLL---SKQANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
            +L+ +G     +   G  PLH A+  G +++V+ L                PLH AA++
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLL---LSYGA 174
           G  ++V LLL  GA P          +  S     PL  A   G + +  +L       +
Sbjct: 355 GHTDIVTLLLKNGASP----------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
             L++     +       ET  ++L     D  G E 
Sbjct: 405 FVLVSDKHRMSFP-----ETVDEILD-VSEDE-GEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           G         G+ PLH A+  G + +V+ L                PLH AA  G  E+ 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGADPLLASYAG 183
           + LL   A            +  ++    PLH AA  G   MV+LLL   A+P LA+ AG
Sbjct: 64  KYLLQNKAKV----------NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113

Query: 184 HTPLSITSD----ETTRKLLQYHLADV 206
           HTPL I +     ET   LL+   A  
Sbjct: 114 HTPLHIAAREGHVETVLALLEKE-ASQ 139

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 32/96 (33%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL---- 79
            G +PLH+AA+ G+ D V   L    +G +P    + G TPL  A   G++ +  +    
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLL---KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399

Query: 80  -----------------------LLMYGADPSDSAI 92
                                  +L    D  +  I
Sbjct: 400 TDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELI 435

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  144 bits (365), Expect = 7e-43
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPK-DNAGYTPLHEAASHGWLDIARLLLMYGA 85
           G+  L    R       +  +   +HG   K +      L +++  G  D+ + ++    
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI---AHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 86  DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRL 129
           DPS     GI  LH+A   G  E+V+ L                PLH AA    V++ + 
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
           L+  GA     +Y+    +       +  E+G  +  + L        + +      L  
Sbjct: 122 LVESGAAVFAMTYSDMQTAA---DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178

Query: 190 TSDETTRKLLQYHLADV 206
              +   +L       +
Sbjct: 179 YEPQNDDELPMKEGDCM 195

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  112 bits (283), Expect = 8e-31
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 29/171 (16%)

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
           +  G   L               + +G     + +     L D++ +G  ++V+ +    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLA-LLLDSSLEGEFDLVQRIIYEV 60

Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
                        LH+A   G  E+V+ L+ +G +   A    +       PLH AA   
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW------TPLHCAASCN 114

Query: 162 CVEMVRLLLSYGADPLLASYAGH---TPLSITSDET---TRKLLQYHLADV 206
            V++ + L+  GA     +Y+            +E      + L      +
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.6 bits (236), Expect = 7e-24
 Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 54/212 (25%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
           D V+       +      +     G T LH A   G+ + V + +     G       D+
Sbjct: 51  DLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGHTEIVKFLV---QFG-VNVNAADS 101

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
            G+TPLH AAS   + + + L+  GA                      +M       +  
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVF--------------AMTYSDMQTAADKCEEM 147

Query: 120 EKGCVEMVRLLLSYGADP-LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
           E+G  +  + L        ++    +Y        L D   +   E   L +  G    +
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIY-------ALWDYEPQNDDE---LPMKEGDCMTI 197

Query: 179 ASYAGHTPLSITSDETTRKLLQYHLADVRGHE 210
                        DE      ++  A +   E
Sbjct: 198 IHREDE-------DEI-----EWWWARLNDKE 217

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  142 bits (360), Expect = 8e-43
 Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 41/188 (21%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDIARLLLM 82
                +    R G   AV   L    +        D+ G++PLH A   G   +  +L+M
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWL---DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
            GA  +    G   PLH AA  G  ++V+ L                PLH A   G  ++
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGAD----PL- 177
              L++ GA            S+ ++    P+  A       +       G +    P  
Sbjct: 121 AEDLVANGALV----------SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170

Query: 178 LASYAGHT 185
              + G T
Sbjct: 171 DTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (303), Expect = 3e-34
 Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 26/169 (15%)

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
                  +      G     RL L     D +     G  PLH A  +G   +V +L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
                        PLH AA  G  ++V+ LL Y AD    +           PLH A   
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN------VPLHYACFW 115

Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSDET---TRKLLQYHLADV 206
           G  ++   L++ GA   + +  G  P+           R+  +    ++
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (362), Expect = 1e-42
 Identities = 48/208 (23%), Positives = 70/208 (33%), Gaps = 36/208 (17%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
              PLH+A        V   L   S       KD  G  PLH + S    +I   LL   
Sbjct: 2   SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 85  ADPSDSAIG---GIRPLHDAAEKGCVEMVRLL------------------PLHDAAEKGC 123
            + +        G  P H A   G +E+V+ L                   LH A  K  
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG-ADPLLASYA 182
            E+ + L+  GA   +             PLH AA  G ++++ LL   G +        
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQ------IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 183 GHTPLSITSD----ETTRKLLQYHLADV 206
           G TPL         +    L++ + A+ 
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  137 bits (347), Expect = 3e-40
 Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 42/212 (19%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG-----PAPKDNAGYTPLHEAASHGWL 74
           + +    G  PLH +      +  ++ L   S           D++G+TP H A S G L
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLL---SKMENVNLDDYPDDSGWTPFHIACSVGNL 85

Query: 75  DIARLLL--MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLH 116
           ++ + L       D +     G+  LH A  K   E+ + L                PLH
Sbjct: 86  EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

Query: 117 DAAEKGCVEMVRLLLSYGADPLLAS----YAVYFLSLPSRPLHDAAEKGCVEMVRLLLS- 171
            AA  G ++++ LL   G   +       +          PL  A  +G  +   LL+  
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWT---------PLFHALAEGHGDAAVLLVEK 196

Query: 172 YGADPLLASYAGHTPLSITSDETTRKLLQYHL 203
           YGA+  L    G     +  +E  +K    ++
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV 228

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  143 bits (363), Expect = 1e-42
 Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 30/193 (15%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
                 +  +PLH AA  G++D     +     G           TPL EAA +  L+  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLV---QAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAE 120
           + L+  GA        G   LH AA+KG  E+V+ L                 P+  A E
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
              V++V+LLLS G+D  +              LH AA  GCV++  +LL+   D    +
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEEN------ICLHWAAFSGCVDIAEILLAAKCDLHAVN 174

Query: 181 YAGHTPLSITSDE 193
             G +PL I + E
Sbjct: 175 IHGDSPLHIAARE 187

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  141 bits (359), Expect = 4e-42
 Identities = 63/225 (28%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           D        GA      I+       TPL  AA   +++AV Y +     G     KD  
Sbjct: 25  DICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAE 76

Query: 61  GYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
           G T LH AA  G  ++ + LL  G  D +    GG  P+  A E   V++V+LL      
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
                      LH AA  GCV++  +LL+   D    +           PLH AA +   
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD------SPLHIAARENRY 190

Query: 164 EMVRLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLAD 205
           + V L LS  +D  L +  G TPL   S      +   +   L D
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  121 bits (306), Expect = 4e-34
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
           +     +PLH AA  G +DI  +L+  GA+    +     PL +AAE   +E V+ L   
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHD 156
                         LH AA+KG  E+V+ LLS G   +                  P+  
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ---------DDGGWTPMIW 117

Query: 157 AAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           A E   V++V+LLLS G+D  +     +  L   +     +    LL     D+
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDL 170

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  142 bits (360), Expect = 3e-42
 Identities = 61/210 (29%), Positives = 80/210 (38%), Gaps = 37/210 (17%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKF-SHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
            G+TPLH A   G + AV   +  F   G      +N   TPLH A       + RLL+ 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------PLHDAAEKG 122
            GA P      G    H A E      +R L                     LH A    
Sbjct: 68  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEKGCVEMVRLLLSYGADPLLAS 180
           C E V+LLL  GAD       +  + + S   PL  A E   + MV+LLL +GA+     
Sbjct: 128 CQETVQLLLERGAD-------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180

Query: 181 YAGHTPLSITSD----ETTRKLLQYHLADV 206
           Y+G + L   S        R L++   AD 
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVR-SGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  141 bits (359), Expect = 6e-42
 Identities = 55/210 (26%), Positives = 76/210 (36%), Gaps = 40/210 (19%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDI 76
           ++   +  +TPLH A        V   +   + G A     D  G T  H A  H     
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLV---TAG-ASPMALDRHGQTAAHLACEHRSPTC 94

Query: 77  ARLLLMYGA----DPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PL 115
            R LL   A    D       G+  LH A    C E V+LL                 PL
Sbjct: 95  LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154

Query: 116 HDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
             A E   + MV+LLL +GA+     Y+          LH A+ +G + +VR L+  GAD
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGS------SALHSASGRGLLPLVRTLVRSGAD 208

Query: 176 PLLASYAGHTPLSITSD----ETTRKLLQY 201
             L +    TPL +       +  R     
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  134 bits (339), Expect = 5e-39
 Identities = 46/195 (23%), Positives = 67/195 (34%), Gaps = 42/195 (21%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP------ 56
             V      GA            HG+T  H A        +   L               
Sbjct: 60  SVVRLLVTAGAS-----PMALDRHGQTAAHLACEHRSPTCLRALL---DSAAPGTLDLEA 111

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLL-- 113
           ++  G T LH A +    +  +LLL  GAD     I  G  PL  A E   + MV+LL  
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171

Query: 114 --------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE 159
                          LH A+ +G + +VR L+  GAD  L +           PL  A  
Sbjct: 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND------TPLMVARS 225

Query: 160 KGCVEMVRLLLSYGA 174
           +  ++++R   +  A
Sbjct: 226 RRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (287), Expect = 3e-31
 Identities = 50/177 (28%), Positives = 62/177 (35%), Gaps = 32/177 (18%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMY----GADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
            D  G TPLH A   G L     L+      G +          PLH A       +VRL
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 113 L----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAV--YFLSLPSRPL 154
           L                  H A E      +R LL   A   L   A     L+     L
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT----AL 120

Query: 155 HDAAEKGCVEMVRLLLSYGADP-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           H A    C E V+LLL  GAD   +   +G +PL    +       + LLQ H A+V
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANV 176

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  143 bits (363), Expect = 4e-42
 Identities = 59/212 (27%), Positives = 81/212 (38%), Gaps = 36/212 (16%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGP---APKDNAGYTPLHEAASHGWLDIARLLLMY 83
               L +A +   +D V   L     G      ++  G+TPLH A      DI  LLL +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL---EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           GADP      G  P   AA  G V++++L                    +AA  G V+ +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLS-YGADPLLASYA 182
           + L   GA+  L            +     L DAAEKG VE++++LL   GAD       
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 183 GHTPLSI--------TSDETTRKLLQYHLADV 206
           G   L            +  T  LL  H ADV
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLD-HGADV 212

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  129 bits (326), Expect = 2e-36
 Identities = 58/248 (23%), Positives = 81/248 (32%), Gaps = 70/248 (28%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           D VE     GA+           +G TP   AA  G +  +   L   S G      D  
Sbjct: 53  DIVELLLRHGAD-----PVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGADVNECDFY 104

Query: 61  GYTPLHEAASHGWLDIARLLLMYGAD----------PSDSAIGGIRPLHDAAEKGCVEMV 110
           G+T   EAA +G +   + L   GA+                GG   L DAAEKG VE++
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 111 RLL-----------------PLHDAAEKG----CVEMVRLLLSYGADPLLASYAVYFLSL 149
           ++L                  L  A           +  LLL +GAD             
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV------------ 212

Query: 150 PSR------PLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKL 198
             R      PL  A EK  + +V+ LL     +       G T L +  +    +    L
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 199 LQYHLADV 206
            +   A  
Sbjct: 273 CK-RGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (293), Expect = 1e-31
 Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 39/183 (21%)

Query: 55  APKDNAGYTPLHEAASHGWLDIARLLLMYGADP-SDSAIGGIRPLHDAAEKGCVEMVRLL 113
           A  +      L +A  +  +D+ + LL  GA+       GG  PLH+A +    ++V LL
Sbjct: 1   AAVE--DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
                           P   AA  G V++++L LS GAD     +  +          +A
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112

Query: 158 AEKGCVEMVRLLLSYGAD----------PLLASYAGHTPLSITSD----ETTRKLLQYHL 203
           A  G V+ ++ L   GA+                 G T L   ++    E  + LL    
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 204 ADV 206
           ADV
Sbjct: 173 ADV 175

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  141 bits (358), Expect = 9e-42
 Identities = 54/217 (24%), Positives = 72/217 (33%), Gaps = 50/217 (23%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
             GET LH AAR    DA    L           +DN G TPLH A S     + ++L+ 
Sbjct: 55  RTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 83  YGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVE 125
             A D       G  PL  AA      M+  L                 LH AA    V+
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171

Query: 126 MVRLLLSYGADP---------LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
              +LL  GA+                         PL  AA +G  E  ++LL + A+ 
Sbjct: 172 AAVVLLKNGANKDMQNNREET---------------PLFLAAREGSYETAKVLLDHFANR 216

Query: 177 LLASYAGHTPLSITSD----ETTRKLLQYHLADVRGH 209
            +  +    P  I  +    +  R L   H      H
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (353), Expect = 7e-41
 Identities = 54/221 (24%), Positives = 75/221 (33%), Gaps = 43/221 (19%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKF----------SHG---PAPKDNAGYTPLH 66
           +N     G TPL  A+  G         E+             G       D  G T LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 67  EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------- 113
            AA +   D A+ LL   AD +     G  PLH A       + ++L             
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 114 ----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL 169
               PL  AA      M+  L++  AD                 LH AA    V+   +L
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS------ALHWAAAVNNVDAAVVL 176

Query: 170 LSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           L  GA+  + +    TPL + +     ET + LL  H A+ 
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  113 bits (285), Expect = 8e-31
 Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 23/136 (16%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
           ++   H G TPL  AARL     +   +   +        D+ G + LH AA+   +D A
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLI---NSHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
            +LL  GA+          PL  AA +G  E  ++L                P   A E+
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233

Query: 122 GCVEMVRLLLSYGADP 137
              ++VRLL       
Sbjct: 234 MHHDIVRLLDLEHHHH 249

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  138 bits (351), Expect = 1e-41
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 22/176 (12%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
               +H+ A  G +D +   L K  +     D  G+TPL  A++ G ++  R LL +GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
           P   A      L  A+  G  ++V LL                PL  A     V+ V  L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
           L+ GAD    + + Y       P+  A   G  ++ +++ ++      ++     P
Sbjct: 122 LARGADLTTEADSGY------TPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 86.3 bits (215), Expect = 2e-21
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 28/135 (20%)

Query: 93  GGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGA 135
           G    +H  A +G ++ ++                   PL  A+  G +E VR LL +GA
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 136 DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD--- 192
           DP + +            L  A+  G  ++V LLL    D  +  + G TPL        
Sbjct: 61  DPHILAKERE------SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 193 -ETTRKLLQYHLADV 206
            +    LL    AD+
Sbjct: 115 VKCVEALLA-RGADL 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  141 bits (358), Expect = 2e-41
 Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 29/185 (15%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
             K   HG +  + A     +  V   L   + G          PLH+AA+     I ++
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKI 80

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKG 122
           LL  G D S     G   L+ A + G ++ V+L                    + A    
Sbjct: 81  LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140

Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA 182
            V +V   LS        +            +H   + G V+M+ LLL Y       +  
Sbjct: 141 DVSIVSYFLSEIPSTFDLAIL-------LSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193

Query: 183 GHTPL 187
              P 
Sbjct: 194 LFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  136 bits (345), Expect = 2e-39
 Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 47/210 (22%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
             V+     G +      ++    G T L+ A   G +  V   +               
Sbjct: 76  KIVKILLFSGLD-----DSQFDDKGNTALYYAVDSGNMQTVKLFV---KKNWRLMFYGKT 127

Query: 61  GY-TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
           G+ T  + A     + I    L       D AI  +  +H   + G V+M+ LL      
Sbjct: 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLLDYMTS 186

Query: 114 -----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC 162
                       +  A +   +EM++ L  Y  +                   +      
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------------YSANLENVLLDD 233

Query: 163 VEMVRLLLSYGADPLLASYAGHTPLSITSD 192
            E+ ++++    +    SY     +   + 
Sbjct: 234 AEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 50/186 (26%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           G        +       +  L    D   + + G    + A     V +V  L       
Sbjct: 1   GMDLSR--INTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGC 162
                  PLH AA     ++V++LL  G D           S         L+ A + G 
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFSGLDD----------SQFDDKGNTALYYAVDSGN 107

Query: 163 VEMVRLLLSYGADPLLASYAG-HTPLSITSD----ETTRKLLQY--------------HL 203
           ++ V+L +      +     G  T                 L                H+
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHI 167

Query: 204 ADVRGH 209
               GH
Sbjct: 168 TIKNGH 173

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 10/104 (9%), Positives = 25/104 (24%), Gaps = 21/104 (20%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETP-LHRAARLGYIDAVAYCLEKFSHGPAPKDNA- 60
           D +    D          N        P +  A     I+ +        +         
Sbjct: 175 DMMILLLDYMTS-----TNTNNSLLFIPDIKLAIDNKDIEMLQALF---KYD------IN 220

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK 104
            Y+   E       +IA++++    +    +      +    + 
Sbjct: 221 IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  139 bits (354), Expect = 3e-41
 Identities = 56/230 (24%), Positives = 79/230 (34%), Gaps = 47/230 (20%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDN 59
           +      + G +     + +      T LH AA    ID V Y +   S G        +
Sbjct: 23  ERCRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKYYI---SKGAIVDQLGGD 74

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
              TPLH A   G L +   L+ YGADPS     G   +H AA+ G   +V  L      
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134

Query: 114 ----------PLHDAAEKG-CVEMVRLLLSYGADPLLASYAVYFLSLPSR--PLHDAAEK 160
                     PL  AA +   V+  RLLL++          V       +   LH A   
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-------VNLGDKYHKNTALHWAVLA 187

Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           G   ++ LLL  GA+    +  G + L +             LQ      
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI-NHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  131 bits (333), Expect = 4e-38
 Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 45/216 (20%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
           +     +    + +A + G  +     +     G      D    T LH AA +  +D+ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELV---EAGYDVRQPDKENVTLLHWAAINNRIDLV 58

Query: 78  RLLLMYGADP-SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAE 120
           +  +  GA            PLH A  +G + MV  L                 +H AA+
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKG-CVEMVRLLLSYGAD 175
            G   +V  L++ G D            +  +    PL  AA +   V+  RLLL++   
Sbjct: 119 FGHTSIVAYLIAKGQDV----------DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 176 P-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
             L   Y  +T L              LL+   A+V
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANV 203

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
             V      G +     ++    +G TPL  AA   +       L   +   +    D  
Sbjct: 123 SIVAYLIAKGQD-----VDMMDQNGMTPLMWAAYRTHSVDPTRLL--LTFNVSVNLGDKY 175

Query: 61  -GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
              T LH A   G   +  LLL  GA+     I G   L  A ++  V M+  L      
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL-QEARQ 234

Query: 120 EKG 122
            KG
Sbjct: 235 AKG 237

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  138 bits (351), Expect = 5e-41
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 38/192 (19%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
           D  +   +  A+      N   + G TPLH A            +    +       + +
Sbjct: 39  DAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILI---RNRATDLDARMH 90

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
            G TPL  AA      +   L+   AD +     G   LH AA    V+   +L      
Sbjct: 91  DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150

Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
                     PL  AA +G  E  ++LL + A+  +  +          P   A E+   
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR------LPRDIAQERMHH 204

Query: 164 EMVRLLLSYGAD 175
           ++VRLL  Y   
Sbjct: 205 DIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  138 bits (350), Expect = 8e-41
 Identities = 53/208 (25%), Positives = 73/208 (35%), Gaps = 50/208 (24%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
            GET LH AAR    DA    L           +DN G TPLH A S     + ++L+  
Sbjct: 24  TGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80

Query: 84  GADPSDSA-IGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
            A   D+    G  PL  AA      M+  L                 LH AA    V+ 
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140

Query: 127 VRLLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLLLSYGADPL 177
             +LL  GA+                         PL  AA +G  E  ++LL + A+  
Sbjct: 141 AVVLLKNGANK---------------DMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 178 LASYAGHTPLSITSD----ETTRKLLQY 201
           +  +    P  I  +    +  R L +Y
Sbjct: 186 ITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (316), Expect = 1e-35
 Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 31/180 (17%)

Query: 51  SHG---PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV 107
             G       D  G T LH AA +   D A+ LL   AD +     G  PLH A      
Sbjct: 12  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71

Query: 108 EMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
            + ++L                 PL  AA      M+  L++  AD              
Sbjct: 72  GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK----- 126

Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
              LH AA    V+   +LL  GA+  + +    TPL + +     ET + LL  H A+ 
Sbjct: 127 -SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.2 bits (233), Expect = 2e-23
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 39/162 (24%)

Query: 72  GWLDIARLLLMYGADPSDSA-IGGIRPLHDAAEKGCVEMVRLL----------------P 114
               +    +  GA   +     G   LH AA     +  + L                P
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRL 168
           LH A       + ++L+   A  L A           R      PL  AA      M+  
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDA-----------RMHDGTTPLILAARLAVEGMLED 110

Query: 169 LLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           L++  AD       G + L   +     +    LL+ + A+ 
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 4e-15
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
             ETPL  AAR G  +     L    H       D+    P   A      DI RLL  Y
Sbjct: 157 REETPLFLAAREGSYETAKVLL---DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

Query: 84  GADPS 88
               S
Sbjct: 214 NLVRS 218

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  135 bits (343), Expect = 2e-40
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
                +H+ A  G +  +A  +            D  G+TPL  AA+HG + +   LL  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI---EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           GADP     G    L  A  KG  ++V++L                PL  A     V+ V
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
           ++LL  GADP + + + Y        +  A   G   + +++ S+   
Sbjct: 119 KMLLESGADPTIETDSGY------NSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.0 bits (235), Expect = 2e-24
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 30/152 (19%)

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK-GCVEMVRLLPLHDA 118
           A    +H+ A+ G +      +                  +  ++ G        PL  A
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVI------------NHTDEEGFT------PLMWA 43

Query: 119 AEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
           A  G + +V  LL  GADP L              L  A  KG  ++V++LL  G D   
Sbjct: 44  AAHGQIAVVEFLLQNGADPQLLGKGRE------SALSLACSKGYTDIVKMLLDCGVDVNE 97

Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
             + G TPL         +  + LL+   AD 
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLE-SGADP 128

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (350), Expect = 2e-39
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 49/220 (22%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEK--FSHGPAP--KD 58
           + ++    +GA              ETPL RA      +A+   ++             +
Sbjct: 154 EMIKILVQLGAS-----PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208

Query: 59  NAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----- 113
             G + LH A    W D+A   +  G D +        PL+ +     V + + L     
Sbjct: 209 KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 114 ------------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
                                    +  AA+    E+++LL     + + +         
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA---- 324

Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
                    +K    + R+ L+  A     S +     ++
Sbjct: 325 --GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (318), Expect = 8e-35
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 39/208 (18%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                  G T LH A + G +D   Y     S G       G  P+H A      D+   
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLA---SVGEVHSLWHGQKPIHLAVMANKTDLVVA 102

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGC--VEMV 127
           L+    +       G  P     E    E+  +            LH     G   +EM+
Sbjct: 103 LVEGAKER------GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-----GADPLLASYA 182
           ++L+  GA P          +    PL  A E    E + L++             A+  
Sbjct: 157 KILVQLGASPTAKDK--ADET----PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 183 GHTPLSITS----DETTRKLLQYHLADV 206
           G++ L        ++   + ++    DV
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMG-IDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (307), Expect = 4e-33
 Identities = 45/213 (21%), Positives = 67/213 (31%), Gaps = 49/213 (23%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
             K        +H AAR G  D V   +     G +P  ++  G T LH A   G +D A
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLI---ETGVSPTIQNRFGCTALHLACKFGCVDTA 69

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGCVEMV 127
           + L   G   S     G +P+H A      ++V  L          P     E    E+ 
Sbjct: 70  KYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127

Query: 128 RLLL----SYGADPLLASYAVYFLSLPSRPLHDAAEKGC--VEMVRLLLSYGADPLLASY 181
            +        G                   LH     G   +EM+++L+  GA P     
Sbjct: 128 EIGSHVKHCKG----------------QTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171

Query: 182 AGHTPLSITSD----ETTRKLLQY----HLADV 206
           A  TPL    +    E    ++          +
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (349), Expect = 2e-39
 Identities = 56/213 (26%), Positives = 80/213 (37%), Gaps = 37/213 (17%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
           D  A+    V+   + +  L  AAR G  + +   L            D    TPLH AA
Sbjct: 12  DPSAKA---VLTGEYKKDELLEAARSGNEEKLMALL--TPLNVNCHASDGRKSTPLHLAA 66

Query: 70  SHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------- 113
            +  + I +LLL +GAD      GG+ PLH+A   G  E+  LL                
Sbjct: 67  GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           PLH+AA K  VE+  LLLS+GADP L +            +  A      E +       
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGK------SAVDMAPTPELRERLTYEFKGH 180

Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQYHLADV 206
           +  L A+               +K L   + + 
Sbjct: 181 S-LLQAAREADL-------AKVKKTLALEIINF 205

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 1e-35
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 25/200 (12%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
           ++     G  PLH A   G+ +     L    HG      D   +TPLHEAAS   +++ 
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVC 140

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----PLHDAAEKGCVEMVRLLLSY 133
            LLL +GADP+     G   +  A      E +        L  AA +  +  V+  L+ 
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200

Query: 134 GADPLLASYAVYFLSLPSRPLHDAAEKG---CVEMVRLLLSYGADPLLASYAGHTPLSIT 190
                    +          LH A         ++  LLL  GA+    +    TPL + 
Sbjct: 201 EIINFKQPQSHE------TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

Query: 191 SD----ETTRKLLQYHLADV 206
           ++    +    L ++  A +
Sbjct: 255 AERAHNDVMEVLHKHG-AKM 273

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (315), Expect = 2e-34
 Identities = 47/211 (22%), Positives = 67/211 (31%), Gaps = 47/211 (22%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
            +       TPLH AA    +  V   L    HG     KD  G  PLH A S+G  ++ 
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVT 107

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
            LLL +GA  +   +    PLH+AA K  VE+  LL                 +  A   
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
              E +       +                  L  AA +  +  V+  L+          
Sbjct: 168 ELRERLTYEFKGHS------------------LLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 182 AGHTPLSITSDETTR------KLLQYHLADV 206
           +  T L               +LL    A+V
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANV 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (312), Expect = 7e-34
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 55/229 (24%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLH----------- 66
           +N       TPLH AA    ++  +  L   SHG  P   +  G + +            
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLL---SHGADPTLVNCHGKSAVDMAPTPELRERL 173

Query: 67  ----------EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG---CVEMVRLL 113
                     +AA    L   +  L                LH A         ++  LL
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233

Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
                           PLH AAE+   +++ +L  +GA                  LH A
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ------TALHRA 287

Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV 206
           A  G ++  RLLLSYG+DP + S  G T   + + E  +++L      +
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-EAVQQILS-ESTPM 334

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (294), Expect = 3e-31
 Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 59/206 (28%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKF------------------SHGPAP--KDNAGYTPL 65
           HG++ +  A      + + Y  +                    +       +  +  T L
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215

Query: 66  HEAASHGW---LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------- 113
           H A +        +A LLL  GA+ ++     + PLH AAE+   +++ +L         
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275

Query: 114 -------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
                   LH AA  G ++  RLLLSYG+DP + S   +                  E V
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT------AAQMGN-----EAV 324

Query: 167 RLLLSYGADP---------LLASYAG 183
           + +LS              L AS AG
Sbjct: 325 QQILSESTPMRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.2 bits (212), Expect = 1e-19
 Identities = 42/152 (27%), Positives = 54/152 (35%), Gaps = 28/152 (18%)

Query: 76  IARLLLMYGADPSDSAIGGIRPLHDAAEKG-CVEMVRLL----------------PLHDA 118
            A  L    A    +       L +AA  G   +++ LL                PLH A
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 119 AEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLL 178
           A    V +V+LLL +GAD                PLH+A   G  E+  LLL +GA    
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKDKGGL------VPLHNACSYGHYEVTELLLKHGACVNA 119

Query: 179 ASYAGHTPLSITSD----ETTRKLLQYHLADV 206
                 TPL   +     E    LL  H AD 
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLS-HGADP 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (333), Expect = 2e-38
 Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 32/195 (16%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
              +T   +    G    +       S+  A +  +   PLHEAA  G L   R  L   
Sbjct: 43  DMSDTNWWKGTSKGRTGLIP------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMV 127
              +     G   L+ A   G  ++V +L                  LH AA KG  ++V
Sbjct: 97  VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           +LLL+ GA   L +               A    C  +++      A   L++   +   
Sbjct: 157 QLLLAKGARTDLRNIEKK------LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

Query: 188 SITSDETTRKLLQYH 202
             +  E       +H
Sbjct: 211 EDSDLEHH---HHHH 222

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (304), Expect = 5e-34
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 37/205 (18%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
            G+  + RA                          +   T   +  S G     R  L+ 
Sbjct: 11  PGQVKVFRALYTFEPRTPDELY---IEEGDIIYITDMSDTNWWKGTSKG-----RTGLIP 62

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
               ++ A     PLH+AA++G +  +R                   L+ A   G  ++V
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 128 RLLLS-YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
            +L +    +    +            LH AA KG  ++V+LLL+ GA   L +      
Sbjct: 123 EMLFTQPNIELNQQNKLGD------TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176

Query: 187 LSITSDETTRKLLQYHLADVRGHEA 211
             + ++     LL+       G +A
Sbjct: 177 FDMATNAACASLLKKKQ----GTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 24/170 (14%)

Query: 54  PAPK-DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
           P PK    G   +  A           L +   D                 KG   ++  
Sbjct: 4   PPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS 63

Query: 113 L-----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG 161
                       PLH+AA++G +  +R  L           A          L+ A   G
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS------TALYWACHGG 117

Query: 162 CVEMVRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
             ++V +L +    +    +  G T L   +     +  + LL    A  
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGART 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  133 bits (338), Expect = 2e-38
 Identities = 56/240 (23%), Positives = 69/240 (28%), Gaps = 52/240 (21%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
             ++      A      ++     G+T LH AA LG    V       + G      +  
Sbjct: 23  PFLDFLLGFSAGHEY--LDLQNDLGQTALHLAAILGEASTVEKLY---AAGAGVLVAERG 77

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP--------------LHDAAEKGC 106
           G+T LH A        A +LL         A                      D+     
Sbjct: 78  GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
            E                     PLH A      EMVRLL   GAD           +  
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCG 192

Query: 151 SRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
             PLH A E     ++ LLL  GADP    Y G TPL            R L   H A  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA-HGAPE 251

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  131 bits (333), Expect = 9e-38
 Identities = 47/237 (19%), Positives = 68/237 (28%), Gaps = 58/237 (24%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEK------------F 50
            TVE     GA      +      G T LH A R+         L+              
Sbjct: 59  STVEKLYAAGAG-----VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

Query: 51  SHGPAPKDNAGYTPLHEAASH-GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEM 109
           +       +  + P    +      +       +          G  PLH A      EM
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173

Query: 110 VRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR 152
           VRLL                 PLH A E     ++ LLL  GADP          +    
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP----------TARMY 223

Query: 153 ----PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQY 201
               PL  A  +    + RLL ++GA          +P S +      +   +  +Y
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  125 bits (316), Expect = 4e-35
 Identities = 46/220 (20%), Positives = 62/220 (28%), Gaps = 50/220 (22%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP-----KDNAGYTPLHEAASHGWLDIARLLL 81
           G+T LH A    +   + + L              +++ G T LH AA  G       L 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL---GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 82  MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------------------- 113
             GA    +  GG   LH A          +L                            
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 114 --PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
                D+      E       +       +Y  +       PLH A      EMVRLL  
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH------TPLHVAVIHKDAEMVRLLRD 179

Query: 172 YGADP-LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
            GAD        G TPL +  +         LL+   AD 
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (293), Expect = 9e-32
 Identities = 35/171 (20%), Positives = 52/171 (30%), Gaps = 27/171 (15%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL 79
                   P    ++    +      E          ++  G+TPLH A  H   ++ RL
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHTPLHVAVIHKDAEMVRL 176

Query: 80  LLMYGADPSDSAI-GGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
           L   GAD +      G  PLH A E     ++ LL                PL  A  + 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
              + RLL ++GA           LS    P   +      +       Y 
Sbjct: 237 NPILARLLRAHGAPEPEDGG--DKLS----PCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (289), Expect = 3e-31
 Identities = 37/181 (20%), Positives = 46/181 (25%), Gaps = 32/181 (17%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSD---SAIGGIRPLHDAAEKGCVEMVRLL 113
               G T LH A  H        LL + A           G   LH AA  G    V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADP--------LLASYAVYFLSL 149
                            LH A          +LL              L  S      + 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLAD 205
            +    D+      E       +       +Y GHTPL +       E  R L     AD
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-AD 183

Query: 206 V 206
           +
Sbjct: 184 L 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  130 bits (330), Expect = 4e-38
 Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 48/212 (22%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
           +     L  A +                       D  G TPL+ A  +  ++IA+ L+ 
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVE 125
            GAD +        P   A  +G  E++  +                  L  AAEKG ++
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 126 MVRLLLSYG-AD----------PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
            V+LLL  G  D           L+   AV               +   ++V+LL+  GA
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALI--EAVGLRE---------GNQLYQDIVKLLMENGA 169

Query: 175 DPLLASYAGHTPLSITSD----ETTRKLLQYH 202
           D  +   +G T +   +     E ++ L QY+
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  108 bits (273), Expect = 1e-29
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 30/154 (19%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
           K       L  A       +  +L        +    G  PL+ A     +E+ + L   
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHD 156
                        P   A  +G  E++  +L +    L            +R     L  
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH---------NRYGGNALIP 112

Query: 157 AAEKGCVEMVRLLLSYG-ADPLLASYAGHTPLSI 189
           AAEKG ++ V+LLL  G  D    +  G+T L  
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  130 bits (329), Expect = 4e-38
 Identities = 38/206 (18%), Positives = 58/206 (28%), Gaps = 51/206 (24%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
            +GE              + +           +D+   TPL  A   G  +    L+   
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
               D  I G   L  A +   + +   L                PL  +   G  EM  
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118

Query: 129 LLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLLLSYGADPLLA 179
            LL +GA+                         PL  A++ G  E+V+ LL  GAD    
Sbjct: 119 FLLEHGANV---------------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163

Query: 180 SYAGHTPLSITSD----ETTRKLLQY 201
              G T  +        E  +   + 
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  125 bits (318), Expect = 2e-36
 Identities = 41/190 (21%), Positives = 61/190 (32%), Gaps = 50/190 (26%)

Query: 14  GAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
             +    + N    +  TPL  A  LG  +A+   +    +      KD  G T L  A 
Sbjct: 23  NLDF---LRNYRDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAV 76

Query: 70  SHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------- 113
            +  L IA  LL  G++ +     G  PL  +   G  EM   L                
Sbjct: 77  KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 114 PLHDAAEKGCVEMVRLLLSYGADP---------LLASYAVYFLSLPSRPLHDAAEKGCVE 164
           PL  A++ G  E+V+ LL  GAD                             A   G  E
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLT---------------AEASARIFGRQE 181

Query: 165 MVRLLLSYGA 174
           ++++      
Sbjct: 182 VIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  105 bits (264), Expect = 2e-28
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 31/151 (20%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           + ++   +   +     +      G T L  A +   +      L   S G     KD +
Sbjct: 49  NAIDKLVENFDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLL---SKGSNVNTKDFS 100

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           G TPL  +   G+ +++  LL +GA+ +D  + G  PL  A++ G  E+V+ L       
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160

Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGA 135
                        A   G  E++++      
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  131 bits (332), Expect = 2e-37
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 28/203 (13%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
           IN     G T LH+A     +D V + +    +G      DN G+ PLH AAS G+LDIA
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLV---ENGANINQPDNEGWIPLHAAASCGYLDIA 122

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------PLHDAAEKGCVEMV 127
             L+  GA        G  PL  A E+   E+++               +       +  
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           + L S   + +  + +          LH AA KG  E+++LL+    D  +  Y G TPL
Sbjct: 183 QWLNSGHINDVRHAKSGGT------ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236

Query: 188 SITSD----ETTRKLLQYHLADV 206
              +     E  R L++ +L D+
Sbjct: 237 HAAAHWGKEEACRILVE-NLCDM 258

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (315), Expect = 8e-35
 Identities = 49/223 (21%), Positives = 75/223 (33%), Gaps = 59/223 (26%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
           D V+   + GA      IN+  + G  PLH AA  GY+D   Y +   S G      ++ 
Sbjct: 87  DMVKFLVENGAN-----INQPDNEGWIPLHAAASCGYLDIAEYLI---SQGAHVGAVNSE 138

Query: 61  GYTPLHEAASHGWLDIARLLLMY-GADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
           G TPL  A      ++ +  +   G D             +       +  + L      
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEEERIMLRDARQWLNSGHIN 191

Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------PLHD 156
                      LH AA KG  E+++LL+    D              +        PLH 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-------------NIKDYDGWTPLHA 238

Query: 157 AAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLL 199
           AA  G  E  R+L+    D    +  G T   +  ++    L 
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE 281

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (311), Expect = 3e-34
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 42/215 (19%)

Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASH 71
             + +     K         A   G  + V   L     G      +  G T LH+A   
Sbjct: 31  RKKTKV----KFDDGAVFLAACSSGDTEEVLRLL---ERGADINYANVDGLTALHQACID 83

Query: 72  GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PL 115
             +D+ + L+  GA+ +     G  PLH AA  G +++   L                PL
Sbjct: 84  DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143

Query: 116 HDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
             A E+   E+++  ++     + A               +       +  + L S   +
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEA------------ARKEEERIMLRDARQWLNSGHIN 191

Query: 176 PLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
            +  + +G T L + +     E  + L+Q    DV
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (303), Expect = 4e-33
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 33/199 (16%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
            +        +G    +   +           K + G      A S G  +    LL  G
Sbjct: 8   QKRNEQLKRWIGSETDLEPPV---VKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERG 63

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
           AD + + + G+  LH A     V+MV+ L                PLH AA  G +++  
Sbjct: 64  ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-GADPLLASYAGHTPL 187
            L+S GA     +      S    PL  A E+   E+++  ++  G D   A       +
Sbjct: 124 YLISQGAHVGAVN------SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 188 SITSDETTRKLLQYHLADV 206
                   R+ L     + 
Sbjct: 178 LR----DARQWLNSGHIND 192

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (277), Expect = 3e-29
 Identities = 34/177 (19%), Positives = 51/177 (28%), Gaps = 41/177 (23%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
            D             G        ++           G      A   G  E V  L   
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------P 153
                         LH A     V+MV+ L+  GA+              ++       P
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-------------INQPDNEGWIP 109

Query: 154 LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           LH AA  G +++   L+S GA     +  G TPL I  +    E  +  +     D+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (269), Expect = 3e-28
 Identities = 32/165 (19%), Positives = 47/165 (28%), Gaps = 29/165 (17%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           G+TPL  A      + +   + +       +         E       D  + L     +
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNR-------QGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
               A  G   LH AA KG  E+++LL                PLH AA  G  E  R+L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 131 LSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD 175
           +    D    +               A E     +  L       
Sbjct: 252 VENLCDMEAVNKVGQ------TAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 29/135 (21%), Positives = 43/135 (31%), Gaps = 23/135 (17%)

Query: 22  INKH--HGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIA 77
           +N+     E       R+   DA  +     S          +G T LH AA+ G+ ++ 
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLN---SGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
           +LL+    D +     G  PLH AA  G  E  R+L                    A E 
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275

Query: 122 GCVEMVRLLLSYGAD 136
               +  L       
Sbjct: 276 ILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           + ++       +     +N   + G TPLH AA  G  +A    +    +       +  
Sbjct: 213 EVLKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEEACRILV---ENLCDMEAVNKV 264

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSD 89
           G T    A       +  L        S+
Sbjct: 265 GQTAFDVADEDILGYLEELQKKQNLLHSE 293

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  128 bits (325), Expect = 5e-37
 Identities = 45/191 (23%), Positives = 62/191 (32%), Gaps = 43/191 (22%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPA-------PKDNAGYTPLHEAASHGWLDIAR 78
            GET LH AA    ++A    +      P         +   G T LH A  +  +++ R
Sbjct: 36  MGETALHIAALYDNLEAAMVLM---EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 79  LLLMYGAD-------------PSDSAIGGIRPLHDAAEKGCVEMVRLL------------ 113
            LL  GA              P +    G  PL  AA  G  E+VRLL            
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152

Query: 114 ----PLHDAAEKGCVEMVR----LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEM 165
                LH    +           LLLSY     L S  +   +    P   A  +G + M
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

Query: 166 VRLLLSYGADP 176
            + L+      
Sbjct: 213 FQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  126 bits (319), Expect = 4e-36
 Identities = 48/196 (24%), Positives = 72/196 (36%), Gaps = 30/196 (15%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
            E+PL  AA+   + A++  L+    G     +   G T LH AA +  L+ A +L+   
Sbjct: 3   WESPLLLAAKENDVQALSKLLK--FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD-------P 137
            +          P+     +G         LH A     V +VR LL+ GA         
Sbjct: 61  PELVFE------PMTSELYEGQT------ALHIAVINQNVNLVRALLARGASVSARATGS 108

Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL-------SIT 190
           +        +     PL  AA  G  E+VRLL+ +GAD       G+T L       + T
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168

Query: 191 SDETTRKLLQYHLADV 206
                  LL  +    
Sbjct: 169 FACQMYNLLLSYDGGD 184

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  125 bits (318), Expect = 1e-36
 Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 55/190 (28%)

Query: 14  GAEVRSWVINKHHG---ETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHE 67
           G+       + HHG      L  AAR G  D V   +   ++G A    +D +G+TPLH 
Sbjct: 3   GSHH-----HHHHGSDLGKKLLEAARAGRDDEVRILM---ANG-ADVNAEDASGWTPLHL 53

Query: 68  AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------- 113
           AA +G L+I  +LL  GAD +     G+ PL  AA  G +E+V +L              
Sbjct: 54  AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113

Query: 114 --PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGC 162
             PLH AA  G +E+V +LL  GAD                             + + G 
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADV---------------NAQDKFGKTAFDISIDNGN 158

Query: 163 VEMVRLLLSY 172
            ++  +L   
Sbjct: 159 EDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 3e-23
 Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 28/154 (18%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
             +     L EAA  G  D  R+L+  GAD           ++     G        PLH
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGAD-----------VNAEDASGWT------PLH 52

Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
            AA  G +E+V +LL  GAD     +A         PL  AA  G +E+V +LL  GAD 
Sbjct: 53  LAAFNGHLEIVEVLLKNGADVNAVDHAGM------TPLRLAALFGHLEIVEVLLKNGADV 106

Query: 177 LLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
                 GHTPL + +     E    LL+ + ADV
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADV 139

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.4 bits (218), Expect = 8e-22
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
           + VE     GA+     +N   H G TPL  AA  G+++ V   L    +G A     D 
Sbjct: 61  EIVEVLLKNGAD-----VNAVDHAGMTPLRLAALFGHLEIVEVLL---KNG-ADVNANDM 111

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
            G+TPLH AA  G L+I  +LL  GAD +     G      + + G  ++  +L   +
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (314), Expect = 4e-36
 Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 38/176 (21%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDNAGYTPLHEAASHGWLDIAR 78
            N    +  L  AA+ G ++ V       +         +    TPLH AA +  + +  
Sbjct: 4   GNSE-ADRQLLEAAKAGDVETVKKLC---TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 79  LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
            LL +GAD      GG+ PLH+A   G  E+  LL                PLH+AA KG
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119

Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGA 174
             E+ +LLL +GADP          +  +R    PL    + G  ++  LL    A
Sbjct: 120 KYEICKLLLQHGADP----------TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  116 bits (294), Expect = 3e-33
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 26/167 (15%)

Query: 55  APKDNAGYTPLHEAASHGWLDIARLLL-MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           A  ++     L EAA  G ++  + L  +   +  D       PLH AA    V +V  L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
                           PLH+A   G  E+  LL+ +GA   +A    +       PLH+A
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEA 115

Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQY 201
           A KG  E+ +LLL +GADP   +  G+TPL +  D   +    L   
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 82.8 bits (206), Expect = 3e-20
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 35/136 (25%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
             VE     GA+     ++     G  PLH A   G+ +     +    HG A     D 
Sbjct: 56  SVVEYLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVAELLV---KHG-AVVNVADL 106

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAA 119
             +TPLHEAA+ G  +I +LLL +GADP+     G  PL    +                
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD---------------- 150

Query: 120 EKGCVEMVRLLLSYGA 135
             G  ++  LL    A
Sbjct: 151 --GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.9 bits (157), Expect = 4e-13
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            L +AA+ G VE V+ L +  +               S PLH AA    V +V  LL +G
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIE-----GRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 174 ADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           AD       G  PL         E    L++ H A V
Sbjct: 66  ADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVV 101

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 5e-36
 Identities = 46/226 (20%), Positives = 69/226 (30%), Gaps = 45/226 (19%)

Query: 21  VINKHHGETPLHRAARLGYIDAVAYCLEKF-----SHGPAP--KDNAGYTPLHEAASHGW 73
           +I+  H  T LH  A     +     +        + G      D    TPL  A     
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------------P 114
             +   L+  GADP+         LH AA      M+  +                    
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

Query: 115 LHDAAEKGC---VEMVRLLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEM 165
           L   A       V   +LL+  GA       A       S        LH AA+   + +
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA----RKDSEKYKGRTALHYAAQVSNMPI 294

Query: 166 VRLLLS-YGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           V+ L+   G++       G TP+ + +     E    L+Q   A V
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASV 339

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  122 bits (308), Expect = 3e-33
 Identities = 38/203 (18%), Positives = 59/203 (29%), Gaps = 46/203 (22%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
             V      GA+              + LH+AA       + Y L            D  
Sbjct: 180 RLVAYLMKAGAD-----PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234

Query: 61  GYTPLHEAASHGWLD---IARLLLMYGADPSDSAIG--------GIRPLHDAAEKGCVEM 109
           G T L   A +   D    A+LL+  GA                G   LH AA+   + +
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294

Query: 110 VRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR 152
           V+ L                 P+  AA++G +E+V  L+  GA         +       
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH------T 348

Query: 153 PLHDAAEKGCVEMVRLLLSYGAD 175
               A       +V +      +
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  119 bits (300), Expect = 4e-32
 Identities = 40/225 (17%), Positives = 57/225 (25%), Gaps = 60/225 (26%)

Query: 24  KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLL 81
           +H+   P  +    G      +     ++   P   +      LH  A  G   I   + 
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNH---TNLQIPTEPEPESPIKLHTEA-AGSYAITEPIT 113

Query: 82  MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------PLHD 117
               +  D        LH  A     E    L                        PL  
Sbjct: 114 RESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

Query: 118 AAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR-------PLHDAAEKGCVEMVRLLL 170
           A       +V  L+  GAD             P+         LH AA      M+  +L
Sbjct: 173 AVLARRRRLVAYLMKAGAD-------------PTIYNKSERSALHQAAANRDFGMMVYML 219

Query: 171 S---YGADPLLASYAGHTPLSITSDE------TTRKLLQYHLADV 206
           +      D       G T L I +         + KLL    A V
Sbjct: 220 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (279), Expect = 5e-29
 Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 42/207 (20%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
            +  L  A+  GYI                  +    P  +   +G   +          
Sbjct: 37  SQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLL 131
           P++        LH  A  G   +   +                LH  A     E    L+
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 145

Query: 132 SYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHT 185
            + A   +A+ A     + +       PL  A       +V  L+  GADP + + +  +
Sbjct: 146 VHEAKECIAAGA----DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201

Query: 186 PLSITSD----ETTRKLLQYHL--ADV 206
            L   +          +L       D+
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDI 228

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  123 bits (311), Expect = 1e-35
 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 39/172 (22%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
               L  AA  G ++ +   L    +      ++  G T L      G  +IAR LL+ G
Sbjct: 5   WGNELASAAARGDLEQLTSLL---QNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRG 60

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
           A+P      G   +HDAA  G ++ ++ L                PLH AA++G + +V 
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 129 LLLSYGADPLLASYAVYFLSLPSR------PLHDAAEKGCVEMVRLLLSYGA 174
            L+ + A  +             R          A   G  E+V L+ + GA
Sbjct: 121 FLVKHTASNVGH-----------RNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  105 bits (264), Expect = 9e-29
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 33/152 (21%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           + +              +N     G T L    +LG  +     L     G  P  KD  
Sbjct: 19  EQLTSLLQNNVN-----VNAQNGFGRTALQ-VMKLGNPEIARRLL---LRGANPDLKDRT 69

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           G+  +H+AA  G+LD  + LL + AD +     G  PLH AA++G + +V  L       
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129

Query: 114 ----------PLHDAAEKGCVEMVRLLLSYGA 135
                         A   G  E+V L+ + GA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.7 bits (211), Expect = 7e-21
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
           +        GA       +     G   +H AAR G++D +   L       A    +DN
Sbjct: 51  EIARRLLLRGAN-----PDLKDRTGFAVIHDAARAGFLDTLQTLL---EFQ-ADVNIEDN 101

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDA 118
            G  PLH AA  G L +   L+ + A +       G      A   G  E+V L+  + A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

Query: 119 A 119
            
Sbjct: 162 G 162

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  122 bits (308), Expect = 1e-35
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 22/134 (16%)

Query: 22  INK-HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIAR 78
               H GET LH A+  G I +V Y L    +G  P  KD+AG+TPLHEA +HG L +  
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 79  LLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKG 122
           LLL + A  + +      PLHDAA+ G V++V+LL                P+    ++ 
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 123 CVEMVRLLLSYGAD 136
              ++ L     + 
Sbjct: 121 MKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (265), Expect = 3e-29
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
            ++ G T LH A+  G +     LL  G+DP           +     G        PLH
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-----------NVKDHAGWT------PLH 48

Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
           +A   G +++V LLL + A      Y          PLHDAA+ G V++V+LLLSYGA  
Sbjct: 49  EACNHGHLKVVELLLQHKALVNTTGYQND------SPLHDAAKNGHVDIVKLLLSYGASR 102

Query: 177 LLASYAGHTPLSITSDETTRKLLQYHL 203
              +  G  P+  T DE+ + LL    
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
            LH A+ KG +  V  LL  G+DP +  +AG TPL    +    +    LLQ H A V
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  122 bits (309), Expect = 1e-35
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 46/170 (27%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
               L  AAR G  D V   +   ++G AP   D  G +PLH AA +G      +LL  G
Sbjct: 2   LGKKLLEAARAGQDDEVRILM---ANG-APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
                       PLH AA +G   +V +L                 LH A E    E+V 
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 129 LLLSYGADPLLASYAVYFLSLPSR---------PLHDAAEKGCVEMVRLL 169
           LL+ YGAD                             + + G  ++  +L
Sbjct: 118 LLIKYGADV---------------HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  103 bits (259), Expect = 5e-28
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 30/145 (20%)

Query: 8   DTVE---DVGAEVRSWVINK-HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAG 61
           D V      GA            G +PLH AA+ G+       L     G +   +    
Sbjct: 16  DEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLL---RAGVSRDARTKVD 67

Query: 62  YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------- 113
            TPLH AAS G  +I  +LL +GAD +   +  +  LH A E    E+V LL        
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 114 --------PLHDAAEKGCVEMVRLL 130
                       + + G  ++  +L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.9 bits (227), Expect = 2e-23
 Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 29/150 (19%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
               L EAA  G  D  R+L+  GA                   G        PLH AA+
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF------------TTDWLGTS------PLHLAAQ 43

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
            G      +LL  G      +           PLH AA +G   +V +LL +GAD     
Sbjct: 44  YGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKHGADVNAKD 97

Query: 181 YAGHTPLSITSD----ETTRKLLQYHLADV 206
               T L   ++    E    L++ + ADV
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIK-YGADV 126

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  122 bits (307), Expect = 2e-34
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 34/208 (16%)

Query: 22  INK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDI 76
             +      T LH A   G+ + V + L     G  P   KD+AG++PLH AAS G  +I
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLL---QLG-VPVNDKDDAGWSPLHIAASAGXDEI 88

Query: 77  ARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAE 120
            + LL+ GA  +     G  PLH AA K   E+  +L                 +H AA 
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
           KG ++MV +LL Y A   +        +  + PLH A ++  VE  + L++ GA   + +
Sbjct: 149 KGNLKMVHILLFYKASTNIQD------TEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 181 YAGHTPLSITSD--ETTRKLLQYHLADV 206
               TPL +         K L     + 
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLA-EGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (283), Expect = 6e-31
 Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 27/196 (13%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
                + A      +     L   +        D    T LH A S G  +I   LL  G
Sbjct: 7   NIMICNLAYSGKLDELKERIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
              +D    G  PLH AA  G  E+V+ L                PLH AA K   E+  
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
           +LL  GA+P    +        +  +H AA KG ++MV +LL Y A   +    G+TPL 
Sbjct: 124 MLLEGGANPDAKDHY------DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177

Query: 189 ITSDETTRKLLQYHLA 204
           +  DE   +  ++ + 
Sbjct: 178 LACDEERVEEAKFLVT 193

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (253), Expect = 1e-26
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 22/164 (13%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
              +     + A S    ++   +L   +  + +       LH A   G  E+V  L   
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEK 160
                        PLH AA  G  E+V+ LL  GA     +           PLH AA K
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC------TPLHYAASK 116

Query: 161 GCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA 204
              E+  +LL  GA+P    +   T +   + +   K++   L 
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (295), Expect = 4e-33
 Identities = 34/183 (18%), Positives = 47/183 (25%), Gaps = 38/183 (20%)

Query: 16  EVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           EV   + ++    G        + G+  +            A   +   TP   AA    
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY---IA-ADVVSEYETPWWTAARKAD 56

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLH 116
                 LL    D       G   L   A  G  + VRLL                  LH
Sbjct: 57  EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115

Query: 117 DAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSY 172
            AA     E+V  L+  GAD            +        L  A E          + +
Sbjct: 116 MAAGYVRPEVVEALVELGADI----------EVEDERGLTALELAREILKTTPKGNPMQF 165

Query: 173 GAD 175
           G  
Sbjct: 166 GRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  111 bits (281), Expect = 5e-31
 Identities = 36/177 (20%), Positives = 46/177 (25%), Gaps = 35/177 (19%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
               G          G            AD          P   AA K   + +  L   
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLED 66

Query: 114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDA 157
                        L   A  G  + VRLL   GAD               R     LH A
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---------MRGGLTALHMA 117

Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD---ETTRKLLQYHLADVRGHEA 211
           A     E+V  L+  GAD  +    G T L +  +    T +         + G E 
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI-GLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 89.5 bits (223), Expect = 2e-22
 Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 7/111 (6%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDNAGYTPLHEAASHGWLDIARLLLM 82
           +G T L   A LG    V         G          G T LH AA +   ++   L+ 
Sbjct: 75  NGRTALLFVAGLGSDKCVRLLA---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
            GAD       G+  L  A E           +      G  +++ +L   
Sbjct: 132 LGADIEVEDERGLTALELAREILKTTPKGNP-MQFGRRIGLEKVINVLEGQ 181

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  118 bits (299), Expect = 5e-33
 Identities = 36/184 (19%), Positives = 50/184 (27%), Gaps = 39/184 (21%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
            ETP   AAR     A++  L            D  G T L   A  G     RLL   G
Sbjct: 45  YETPWWTAARKADEQALSQLL----EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 85  ADP-SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           AD       GG+  LH AA     E+V  L                 L  A E       
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160

Query: 128 RLLLSYGADP------LLASYAVYFLSLPSR----------PLHDAAEKGCVEMVRLLLS 171
              + +G          +    V+  +                +    K   +   +   
Sbjct: 161 GNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV 220

Query: 172 YGAD 175
           + A+
Sbjct: 221 HVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (288), Expect = 2e-31
 Identities = 33/192 (17%), Positives = 45/192 (23%), Gaps = 44/192 (22%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
             G        + G+  +            A   +   TP   AA          LL   
Sbjct: 13  GEGAMEYLIEWKDGHSPSWVPSS---YIA-ADVVSEYETPWWTAARKADEQALSQLL-ED 67

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMV 127
            D       G   L   A  G  + VRLL                  LH AA     E+V
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 128 RLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLSYGADP------- 176
             L+  GAD            +        L  A E          + +G          
Sbjct: 128 EALVELGADI----------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 177

Query: 177 -LLASYAGHTPL 187
            L      +  +
Sbjct: 178 VLEGQVFEYAEV 189

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (279), Expect = 4e-30
 Identities = 36/198 (18%), Positives = 47/198 (23%), Gaps = 46/198 (23%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           GE      +R                        G          G            AD
Sbjct: 1   GEVNKIIGSR--------------------TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD 40

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLL 131
                     P   AA K   + +  L                L   A  G  + VRLL 
Sbjct: 41  VVSE---YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97

Query: 132 SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS 191
             GAD                 LH AA     E+V  L+  GAD  +    G T L +  
Sbjct: 98  EAGADLDHRDMRGGL-----TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152

Query: 192 D---ETTRKLLQYHLADV 206
           +    T +         +
Sbjct: 153 EILKTTPKGNPMQFGRRI 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.1 bits (232), Expect = 3e-23
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 29/169 (17%)

Query: 8   DTVE---DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGY 62
             V    + GA++     +   G T LH AA     + V   +     G     +D  G 
Sbjct: 91  KCVRLLAEAGADLDH--RDMRGGLTALHMAAGYVRPEVVEALV---ELGADIEVEDERGL 145

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------P 114
           T L  A            + +G       +     + +       E+  ++         
Sbjct: 146 TALELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIVEKRGKGKDV 202

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV 163
            +    K   +   +   + A+ +   Y           L  A  +  +
Sbjct: 203 EYLVRWKDGGDCEWVKGVHVAEDVAKDY--------EDGLEYAVAESVI 243

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  114 bits (288), Expect = 2e-32
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 29/159 (18%)

Query: 52  HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR 111
                        L  AA+ G ++  R LL  GA+P+     G RP+      G   +  
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAE 61

Query: 112 LL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPL 154
           LL                 P+HDAA +G ++ + +L   GA   +             P+
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR------LPV 115

Query: 155 HDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE 193
             A E G  ++ R L +           G     I + E
Sbjct: 116 DLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (274), Expect = 3e-30
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 36/165 (21%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARL 79
            +       L  AA  G ++ V   L     G  P   ++ G  P+      G   +A L
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALL---EAGANPNAPNSYGRRPIQ-VMMMGSARVAEL 62

Query: 80  LLMYGADP--SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEK 121
           LL++GA+P  +D A    RP+HDAA +G ++ + +L                P+  A E 
Sbjct: 63  LLLHGAEPNCADPA-TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
           G  ++ R L +       ++                A +G  ++ 
Sbjct: 122 GHRDVARYLRAAAGGTRGSN-----------HARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.4 bits (215), Expect = 1e-21
 Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
           + V    + GA       N    +G  P+      G        L    HG  P   D A
Sbjct: 26  EEVRALLEAGANP-----NAPNSYGRRPIQVMMM-GSARVAELLL---LHGAEPNCADPA 76

Query: 61  GYT-PLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------ 113
             T P+H+AA  G+LD   +L   GA        G  P+  A E G  ++ R L      
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 114 -----PLHDAAEKGCVEMV 127
                     A +G  ++ 
Sbjct: 137 TRGSNHARIDAAEGPSDIP 155

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  113 bits (285), Expect = 3e-32
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 24/136 (17%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
              +    L  AA+ G ++  R LL  GADP+     G RP+      G  ++  LL   
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLH 66

Query: 114 --------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE 159
                         P+HDAA +G ++ + +L   GA   +             P+  A E
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR------LPVDLAEE 120

Query: 160 KGCVEMVRLLLSYGAD 175
           +G  ++ R L +   D
Sbjct: 121 QGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  105 bits (266), Expect = 2e-29
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 27/137 (19%)

Query: 22  INKH--HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIA 77
           I+      +  L  AA  G ++ V   L     G  P   +  G  P+      G   +A
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLL---EAGADPNALNRFGRRPIQ-VMMMGSAQVA 60

Query: 78  RLLLMYGADP--SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAA 119
            LLL++GA+P  +D A    RP+HDAA +G ++ + +L                P+  A 
Sbjct: 61  ELLLLHGAEPNCADPA-TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 120 EKGCVEMVRLLLSYGAD 136
           E+G  ++ R L +   D
Sbjct: 120 EQGHRDIARYLHAATGD 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  113 bits (285), Expect = 7e-32
 Identities = 43/182 (23%), Positives = 64/182 (35%), Gaps = 32/182 (17%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
               L  AA  G +  V   L        P   +  G T L      G   IA  LL  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQG 58

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV 144
           A P           +     G        P+HDAA  G ++ +++L+ +GAD  +     
Sbjct: 59  ASP-----------NVQDTSGTS------PVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101

Query: 145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQY 201
                   P+H A ++G   +V  L +  +D       G TPL +           +LQ 
Sbjct: 102 A------LPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

Query: 202 HL 203
           H+
Sbjct: 155 HM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  101 bits (254), Expect = 3e-27
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 21/124 (16%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
            G+T L      G        L     G +P  +D +G +P+H+AA  G+LD  ++L+ +
Sbjct: 35  FGKTALQVMMF-GSTAIALELL---KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVR 128
           GAD +     G  P+H A ++G   +V  L               PL  A ++G  ++V 
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVD 150

Query: 129 LLLS 132
           +L  
Sbjct: 151 ILQG 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  113 bits (284), Expect = 6e-31
 Identities = 31/199 (15%), Positives = 49/199 (24%), Gaps = 31/199 (15%)

Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASH 71
               R     + +    L  AA  G ++ V   +        P   +  G T LH A   
Sbjct: 8   AGSPRKARRARLNPLVLLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICG 64

Query: 72  GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------P 114
               I   L+  GA+ +     G  PLH AA      +   L                  
Sbjct: 65  ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124

Query: 115 LHDAA--EKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
                   +G  +    L        L +    +       L D + +   E +      
Sbjct: 125 FEKCDPYREGYADCATYLADVEQSMGLMNSGAVY------ALWDYSAEFGDE-LSFREGE 177

Query: 173 GADPLLASYAGHTPLSITS 191
               L       T     +
Sbjct: 178 SVTVLRRDGPEETDWWWAA 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 30/151 (19%), Positives = 41/151 (27%), Gaps = 34/151 (22%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGP---APKDN 59
             V+     GA      +N    HG TPLH AA           +    HG    A   +
Sbjct: 68  SIVDFLITAGAN-----VNSPDSHGWTPLHCAASCNDTVICMALV---QHGAAIFATTLS 119

Query: 60  AGYTPLHEAASH--GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
            G T   +   +  G+ D A  L            G +  L D + +   E+        
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 179

Query: 114 -----------PLHDAAEKGCVEMV-RLLLS 132
                          AA  G    V R    
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 127 VRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
           +R +L     P  A  A      P   L DAA  G +E+V+  +    DP   +  G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLN---PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA 57

Query: 187 LSITSD----ETTRKLLQYHLADV 206
           L              L+    A+V
Sbjct: 58  LHNAICGANYSIVDFLIT-AGANV 80

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 16/94 (17%), Positives = 22/94 (23%), Gaps = 16/94 (17%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG----PAPKDNAGYTPLHE 67
           DV   +    +        L   +   + D +      F  G       +D    T    
Sbjct: 144 DVEQSMG---LMNSGAVYALWDYSA-EFGDEL-----SFREGESVTVLRRDGPEETDWWW 194

Query: 68  AASHGWLDI-ARLLLMYGADPSDSAIGGIRPLHD 100
           AA HG      R     G  P           H 
Sbjct: 195 AALHGQEGYVPRNYF--GLFPRVKPQRSKVKHHH 226

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  107 bits (271), Expect = 4e-30
 Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 23/129 (17%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDNAGYTPLHEAASHGWLDIARLLLM 82
           +G TPLH AAR G+++ V   L     G A    KD  G TPLH AA +G L++ +LLL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEM 126
            GAD +     G  PLH AA  G +E+V+LL                PLH AA  G +E+
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 127 VRLLLSYGA 135
           V+LLL  GA
Sbjct: 117 VKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  107 bits (269), Expect = 7e-30
 Identities = 53/130 (40%), Positives = 67/130 (51%), Gaps = 22/130 (16%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           G TPLH AA +G L++ +LLL  GAD +     G  PLH AA  G +E+V+LL       
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE 164
                    PLH AA  G +E+V+LLL  GAD                PLH AA  G +E
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR------TPLHLAARNGHLE 115

Query: 165 MVRLLLSYGA 174
           +V+LLL  GA
Sbjct: 116 VVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 64.7 bits (159), Expect = 9e-14
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 17/86 (19%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDN 59
           + V+   + GA+     +N    +G TPLH AAR G+++ V   L     G A    KD 
Sbjct: 49  EVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG-ADVNAKDK 99

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGA 85
            G TPLH AA +G L++ +LLL  GA
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           PLH AA  G +E+V+LLL  GAD       G TPL + +     E  + LL+   ADV
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  106 bits (268), Expect = 1e-29
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 31/142 (21%)

Query: 14  GAEVRSWVINKHHG---ETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHE 67
           G+       + HHG      L  AAR G  D V   +   ++G A    KD  G TPL+ 
Sbjct: 3   GSH-----HHHHHGSDLGKKLLEAARAGQDDEVRILM---ANG-ADVNAKDEYGLTPLYL 53

Query: 68  AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------- 113
           A +HG L+I  +LL  GAD +     G  PLH AA  G +E+  +L              
Sbjct: 54  ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113

Query: 114 --PLHDAAEKGCVEMVRLLLSY 133
                 +   G  ++  +L   
Sbjct: 114 KTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 87.1 bits (217), Expect = 4e-22
 Identities = 42/156 (26%), Positives = 60/156 (38%), Gaps = 32/156 (20%)

Query: 51  SHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMV 110
            HG     +     L EAA  G  D  R+L+  GAD           ++   E G     
Sbjct: 9   HHG-----SDLGKKLLEAARAGQDDEVRILMANGAD-----------VNAKDEYGLT--- 49

Query: 111 RLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL 170
              PL+ A   G +E+V +LL  GAD        +       PLH AA  G +E+  +LL
Sbjct: 50  ---PLYLATAHGHLEIVEVLLKNGADVNAVDAIGF------TPLHLAAFIGHLEIAEVLL 100

Query: 171 SYGADPLLASYAGHTPLSITSD----ETTRKLLQYH 202
            +GAD       G T   I+      +    L + +
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 86.7 bits (216), Expect = 7e-22
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDN 59
           D V      GA+     +N    +G TPL+ A   G+++ V   L    +G A     D 
Sbjct: 28  DEVRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLL---KNG-ADVNAVDA 78

Query: 60  AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
            G+TPLH AA  G L+IA +LL +GAD +     G      +   G  ++  +L   +
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
            L +AA  G  + VR+L++ GAD       G TPL + +     E   ++L  + ADV
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADV 73

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (261), Expect = 2e-27
 Identities = 42/209 (20%), Positives = 63/209 (30%), Gaps = 44/209 (21%)

Query: 27  GETPLHRAA---RLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAASHGW 73
           G+T L +A    + G    +   L+       P          +   G++ LH A     
Sbjct: 43  GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
           L   +LL+  GAD    A G     H        E+    PL  AA     ++V  LL  
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL----PLSLAACTKQWDVVTYLLEN 158

Query: 134 GAD-------------PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS 180
                            L A   +   S  +  L      G ++M   L        +++
Sbjct: 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218

Query: 181 YAGHTPLSITSDETTRKLLQYHLADVRGH 209
           + G TPL               LA   G 
Sbjct: 219 HQGLTPL--------------KLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 3e-26
 Identities = 40/208 (19%), Positives = 60/208 (28%), Gaps = 40/208 (19%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP-------KDNAGYTPLHEAASH---GWLDI 76
               L      G  + +   LE               + + G T L +A  +   G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 77  ARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
              LL    D  +          D   +G         LH A EK  ++ V+LL+  GAD
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS------ALHIAIEKRSLQCVKLLVENGAD 115

Query: 137 PLLASYAVYFLSLPSR-------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYAGHTP 186
             L +   +F             PL  AA     ++V  LL      A        G+T 
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

Query: 187 LSITSDETTRKLLQYHLADVRGHEAPKW 214
           L              H   +    +P+ 
Sbjct: 176 L--------------HALVMIADNSPEN 189

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 97.9 bits (244), Expect = 6e-25
 Identities = 31/167 (18%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEK------------FSHGPAPKDNAGYTPLHEAASHG 72
           + G + LH A     +  V   +E             F          G  PL  AA   
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 73  WLDIARLLL---MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
             D+   LL      A    +   G   LH               L      G ++M   
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENS-ALVIHMYDGLLQMGAR 206

Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP 176
           L        ++++          PL  AA++G +E+ R +L      
Sbjct: 207 LCPTVQLEEISNHQGL------TPLKLAAKEGKIEIFRHILQREFSG 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 23  NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLL 80
           +     + L      G +   A               ++ G TPL  AA  G ++I R +
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLC---PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 81  LMYGADPSD 89
           L      + 
Sbjct: 241 LQREFSGAA 249

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (257), Expect = 1e-26
 Identities = 36/222 (16%), Positives = 56/222 (25%), Gaps = 60/222 (27%)

Query: 23  NKHHGETPLHRA---ARLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAA 69
           +   G+T L +A      G  D +A  L+      +               G T LH A 
Sbjct: 50  DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI 109

Query: 70  SHGWLDIARLLLMYGAD--------------PSDSAIGGIRPLHDAAEKGCVEMVRLL-- 113
               + +  LL+  GAD                     G  PL  AA    + +V+ L  
Sbjct: 110 ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169

Query: 114 -----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---- 152
                             LH   E     +            +                 
Sbjct: 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229

Query: 153 ------PLHDAAEKGCVEMVRLLLSYGAD---PL-LASYAGH 184
                 PL  AA  G + ++  +L            A++  H
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.5 bits (248), Expect = 2e-25
 Identities = 39/191 (20%), Positives = 57/191 (29%), Gaps = 27/191 (14%)

Query: 24  KHHGETPLHRAARLGYIDAVAYCLEKF----SHGP---APKDNAGYTPLHEAASH---GW 73
           + +    +  A        +   L                    G T L +A  +   G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
            D   LLL                  D+  KG         LH A E+  + +V LL+  
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT------ALHIAIERRNMTLVTLLVEN 123

Query: 134 GADPLLASYAVYFLSLPSR--------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYA 182
           GAD   A+   +F     R        PL  AA    + +V+ LL      AD       
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 183 GHTPLSITSDE 193
           G+T L    + 
Sbjct: 184 GNTVLHALVEV 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 32/177 (18%), Positives = 50/177 (28%), Gaps = 52/177 (29%)

Query: 83  YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------------------PLHDA 118
             A      +   R + DA  +   + +  L                         L  A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 119 ---AEKGCVEMVRLLLSYGADPLLASYAV--YFLSLPSR---PLHDAAEKGCVEMVRLLL 170
                 G  + + LLL            V   +     +    LH A E+  + +V LL+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 171 SYGAD--------------PLLASYAGHTPLSITS----DETTRKLLQ--YHLADVR 207
             GAD                   Y G  PLS+ +        + LLQ  +  AD+ 
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.7 bits (242), Expect = 6e-26
 Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 55  APKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
            P  +        A  +G LD  +  +  G D            +   E G        P
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-----------NRTLEGGRK------P 43

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
           LH AA+ G +E++  LL  GAD                PL  A  +G V  V+LLLS GA
Sbjct: 44  LHYAADCGQLEILEFLLLKGADINAPDKHHIT------PLLSAVYEGHVSCVKLLLSKGA 97

Query: 175 DPLLASYAGHTPLSITSDETTRKLLQ 200
           D  +    G T    T ++  + LLQ
Sbjct: 98  DKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.4 bits (236), Expect = 4e-25
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMY 83
             +     A + G +D V   +   + G         G  PLH AA  G L+I   LL+ 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYV---AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMV 127
           GAD +      I PL  A  +G V  V+LL                       +    ++
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122

Query: 128 R 128
           +
Sbjct: 123 Q 123

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 98.7 bits (246), Expect = 4e-25
 Identities = 42/185 (22%), Positives = 56/185 (30%), Gaps = 27/185 (14%)

Query: 24  KHHGETPLHRAARLGYIDAVAYCLEKF-SHG------PAPKDNAGYTPLHEAA---SHGW 73
           K      L      G  D +   L    +H          + + G T L +A    S G 
Sbjct: 2   KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY 133
            D   +LL       +       P  D   +G         LH A E+ C   V LL+  
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVELLVEK 115

Query: 134 GADPLLASYAVYFLSLPSR--------PLHDAAEKGCVEMVRLLLSYG---ADPLLASYA 182
           GAD    +   +F              PL  AA      +V  L   G   AD       
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 183 GHTPL 187
           G+T L
Sbjct: 176 GNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.2 bits (242), Expect = 1e-24
 Identities = 42/215 (19%), Positives = 58/215 (26%), Gaps = 56/215 (26%)

Query: 26  HGETPLHRAA---RLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAASHG 72
            G+T L +A      G  D +   L+                      G T LH A    
Sbjct: 45  TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104

Query: 73  WLDIARLLLMYGADPSDSAIG--------------GIRPLHDAAEKGCVEMVRLL----- 113
                 LL+  GAD    A G              G  PL  AA      +V  L     
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164

Query: 114 --------------PLHDAAE---------KGCVEMVRLLLSYGADPLLASYAVYFLSLP 150
                          LH             K   +M  LLL   A     +     L+  
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224

Query: 151 SR-PLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
              PL  AA+ G + + + ++        A +  H
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 27/126 (21%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP-----KDNAGYTPLHEAASHG------- 72
           + GE PL  AA       V Y      +G        +D+ G T LH   +         
Sbjct: 138 YFGELPLSLAACTNQPHIVHYLT---ENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194

Query: 73  --WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL 130
                +  LLL+  A             +D           L PL  AA+ G + + + +
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQHI 244

Query: 131 LSYGAD 136
           +     
Sbjct: 245 IRREIA 250

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 96.7 bits (241), Expect = 4e-25
 Identities = 24/185 (12%), Positives = 40/185 (21%), Gaps = 37/185 (20%)

Query: 23  NKHHGETPLHRAARLGYIDAVAYCLEK--FSHGPAPKDNAGYTPLHEAASHGWLDIARLL 80
           N       +  AA LG  +      EK         K N  Y  L          I+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 81  LMYGADPSDSAIGGIRPLHDAAEKG------CVEMVRLL----------------PLHDA 118
           +  GAD       G        + G        E+ ++                  +   
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 119 AEKGCVEMVR-------LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS 171
                V+          +    G   L+              L           ++++  
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL------TALEFVKRCQKPIALKMMED 175

Query: 172 YGADP 176
           Y    
Sbjct: 176 YIKKY 180

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.0 bits (235), Expect = 6e-25
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 16/97 (16%)

Query: 57  KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--- 113
               G TPLH AA +G  +  + LL  GAD +  +  G  PLH AA+ G  E+V+LL   
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 114 -------------PLHDAAEKGCVEMVRLLLSYGADP 137
                        P H A + G  E+V+LL + GAD 
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 2e-16
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 8   DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNA 60
           + V+     GA+     +N     G TPLH AA+ G+ + V   L   + G     +   
Sbjct: 23  EEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLL---AKGADVNARSKD 74

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH 99
           G TP H A  +G  +I +LL   GAD +  + G     H
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           PLH+AA+ G  E V+ LLS GAD    S  G+TPL + +     E  + LL    ADV
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADV 68

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.7 bits (211), Expect = 1e-21
 Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 16/91 (17%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------- 113
           G TPLH AA +G L++ +LLL  GAD +     G  PLH AA  G +E+V+LL       
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 114 ---------PLHDAAEKGCVEMVRLLLSYGA 135
                    PLH AA  G +E+V+LLL  GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.8 bits (206), Expect = 7e-21
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
           +G TPLH AAR G+++ V   L     G     KD  G TPLH AA +G L++ +LLL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           GAD +     G  PLH AA  G +E+V+LL
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 1e-14
 Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           PLH AA  G +E+V+LLL  GAD                PLH AA  G +E+V+LLL  G
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGR------TPLHLAARNGHLEVVKLLLEAG 58

Query: 174 ADPLLASYAGHTPLSITS 191
           AD       G TPL + +
Sbjct: 59  ADVNAKDKNGRTPLHLAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 8e-14
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 15/85 (17%)

Query: 8  DTVE---DVGAEVRSWVINK--HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNA 60
          + V+   + GA+V     N    +G TPLH AAR G+++ V   L     G     KD  
Sbjct: 16 EVVKLLLEAGADV-----NAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKN 67

Query: 61 GYTPLHEAASHGWLDIARLLLMYGA 85
          G TPLH AA +G L++ +LLL  GA
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.5 bits (202), Expect = 3e-20
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 8   DTVE---DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGY 62
                    G+      +        L  AAR G  D V   +   ++G   A KD  G 
Sbjct: 8   HHSSGLVPRGSH-----MGSD-LGKKLLEAARAGQDDEVRILM---ANGADVAAKDKNGS 58

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           TPLH AA +G L++ +LLL  GAD       G      + + G  ++  +L
Sbjct: 59  TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.1 bits (201), Expect = 5e-20
 Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 26/134 (19%)

Query: 68  AASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMV 127
            +SH     +  L+  G+                             L +AA  G  + V
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG--------------SDLGK------KLLEAARAGQDDEV 40

Query: 128 RLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL 187
           R+L++ GAD                PLH AA  G +E+V+LLL  GAD       G T  
Sbjct: 41  RILMANGADVAAKDKNGS------TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94

Query: 188 SITSDETTRKLLQY 201
            I+ D     L + 
Sbjct: 95  DISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.8 bits (151), Expect = 8e-13
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 118 AAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPL 177
            +          L+  G+                + L +AA  G  + VR+L++ GAD  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG---------KKLLEAARAGQDDEVRILMANGADVA 51

Query: 178 LASYAGHTPLSITSD----ETTRKLLQYHLADVRGHEAPKW 214
                G TPL + +     E  + LL+   ADV   +    
Sbjct: 52  AKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGK 91

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 38/195 (19%), Positives = 59/195 (30%), Gaps = 35/195 (17%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHG----WLDIAR 78
            HG TPLH    +  ++ V + +    HG      DN G + L +A              
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLV---KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 79  LLLMYGADPSDSAIGGIRPLHDAAE----KGCVEMVRLL---PLHDAAEKGCVEMVRLLL 131
           LL                 LH         GC    +      +    +K    +     
Sbjct: 186 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 132 SYGADPLLASYAVYFLSLPSR-------------------PLHDAAEKGCVEMVRLLLSY 172
              + P   +       L +                     L+ AA  G + +V  LL Y
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 173 GADPLLASYAGHTPL 187
           GADP +A+ +G  P+
Sbjct: 306 GADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAA 69
           +G+T L+ AARLG I  V   L    +G  P   + +G  P+   A
Sbjct: 282 NGDTCLNIAARLGNISIVDALL---DYGADPFIANKSGLRPVDFGA 324

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 3e-17
 Identities = 31/235 (13%), Positives = 57/235 (24%), Gaps = 51/235 (21%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEK-FSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
                   AA  G++  +    E   +   A      Y     AA +G L +   L    
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 85  ADPSDSAIG--GIRPLHDAA-EKGCVEMVRLL---------PLHDAAEKGCVEMVRLLLS 132
              + + I          AA  +G   ++  L               E G   +   +  
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246

Query: 133 YGADPLLASYAVYF------LSLPSR--------PLHDAAEKGC---VEMVRLLLS---- 171
           +         A           L ++         L +   +     ++ +R LLS    
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306

Query: 172 -YGADPLLASYAGHTPLSITS----DETTRKLLQ------------YHLADVRGH 209
              A         +  L +            LL             Y++ +  G 
Sbjct: 307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGR 361

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.4 bits (185), Expect = 4e-16
 Identities = 33/218 (15%), Positives = 53/218 (24%), Gaps = 44/218 (20%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNA-GYTPLHEAAS 70
           ++       +I           AA  G++  +    E           A  Y     AA 
Sbjct: 149 ELAPTEIMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 71  -HGWLDIARLLLMYGADPSDSAIGGIR----------------------PLHDAAEKGCV 107
             G  ++   LL      + + I                              +   G  
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267

Query: 108 EMVR-------LLPLHDAAEKGC---VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
           ++V           L +   +     ++ +R LLS      LA  A       +  L  A
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI-PGDANELLRLA 326

Query: 158 AEKGCVEMVRLLLSYGADPLL--------ASYAGHTPL 187
              G      LLLS  +   L            G   L
Sbjct: 327 LRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.6 bits (183), Expect = 7e-16
 Identities = 28/183 (15%), Positives = 45/183 (24%), Gaps = 34/183 (18%)

Query: 57  KDNAGYTPLHEAASHGW---LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           K          AA  G    LD   LLL              +    AAE G + ++  L
Sbjct: 88  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 114 ------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLH 155
                                 AAE G + ++  L         A               
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY----AFR 203

Query: 156 DAA-EKGCVEMVRLLLSYGAD----PLLASYAGHTP----LSITSDETTRKLLQYHLADV 206
            AA  +G   ++  LL          +     G       ++   +        + L++ 
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263

Query: 207 RGH 209
            G 
Sbjct: 264 DGV 266

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 27  GETPLHRAAR---LGYIDAVAYCLE----KFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
           G   L    R      +D + + L     K     A         L  A   G      L
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           LL   +     A+      +     G +++  + 
Sbjct: 338 LLSIPS---VLALTKANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 75  DIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG 134
           ++ ++  +     +       +   DA +KG    V             ++ + LLL+  
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 118

Query: 135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA--SYAGHTPL 187
               +     Y           AAE G + ++  L       ++A      +   
Sbjct: 119 EIVKVIQAENYQ------AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 2/100 (2%)

Query: 16  EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGW 73
           E           ET LH A R     ++        +      +   G T LH       
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
            +  +LLL   A    +   G  PL  A          LL
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 23/161 (14%)

Query: 33  RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI 92
             AR  YI A  Y   +++        A    L EA     +         G D ++   
Sbjct: 103 MIARKDYITA-KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE--- 158

Query: 93  GGIRPLHDAAEKGCVEMVRLLPLHDA---AEKGCVEMVRLLLSYGADPLLASYAVYFLSL 149
               PL +  E           LH A    ++  + +V  L+    +       +   + 
Sbjct: 159 --KIPLANGHEPDE------TALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTG 203

Query: 150 PSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
                LH        E ++LLL   A   +A+ +G TPL I
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 23/118 (19%), Positives = 29/118 (24%), Gaps = 26/118 (22%)

Query: 58  DNAGYTPLHEAASHG---WLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
                T LH A        L I   L+    +           L     KG         
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----------LDKQTGKGST------A 208

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
           LH        E ++LLL   A   +A+           PL  A          LL   
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIAN------ESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 5/61 (8%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLM 82
             G T LH        + +   L            + +G TPL  A          LL  
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

Query: 83  Y 83
            
Sbjct: 260 A 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 23  NKHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLL 80
            +   E  LH A ++    ++        +G     K   G T LH AA +   D  +LL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 81  LMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEK 121
           L   A        G   L  A +K   E   LL    A   
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 286

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.6 bits (144), Expect = 9e-11
 Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 25/160 (15%)

Query: 33  RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAI 92
              R  YI A  Y   +F+    P+       L  A  +  L         G D      
Sbjct: 128 MGTRRDYIMAK-YVEHRFARRCTPEPQ----RLWTAICNRDLLSVLEAFANGQDFGQP-- 180

Query: 93  GGIRPLHDAAEKGCVEMVRLLPLHDAAEKG---CVEMVRLLLSYGADPLLASYAVYFLSL 149
               P  DA           L LH A +      + +V  ++  G      +      + 
Sbjct: 181 ---LPGPDAQAPEE------LVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------AD 225

Query: 150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
            +  LH AA     + ++LLL   A     + AG T L I
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.5 bits (138), Expect = 6e-10
 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           GA+V +WV       TPL +A     + A  + L +        D+AG  PLH A   G 
Sbjct: 223 GADV-NWVNGGQDNATPLIQATAANSLLACEF-LLQNGANVNQADSAGRGPLHHATILGH 280

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPL 115
             +A L L  GAD       G  PL  A E    ++V LL L
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 32/172 (18%), Positives = 46/172 (26%), Gaps = 21/172 (12%)

Query: 18  RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIA 77
           R     +  G+ P+     +           +         + G      +     L   
Sbjct: 157 RRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTM 216

Query: 78  RLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP 137
              L +GAD             +  +          PL  A     +     LL  GA+ 
Sbjct: 217 ADALAHGADV---------NWVNGGQDNA------TPLIQATAANSLLACEFLLQNGANV 261

Query: 138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
             A       S    PLH A   G   +  L L  GAD       G  PL+I
Sbjct: 262 NQAD------SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 29/165 (17%)

Query: 33  RAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY--GADPSDS 90
              R  YI A  Y   +F+    P+       L  A  +   D+  +L  +  G D    
Sbjct: 109 MGTRRDYIMA-KYVEHRFARRCTPEPQR----LWTAICNR--DLLSVLEAFANGQDFGQP 161

Query: 91  AIGGIRPLHDAAEKGCVEMVRLLPLHDA---AEKGCVEMVRLLLSYGADPLLASYAVYFL 147
                 P  DA           L LH A   A +  + +V  ++  G      +      
Sbjct: 162 L-----PGPDAQAPEE------LVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------ 204

Query: 148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD 192
           +  +  LH AA     + ++LLL   A     + AG T L I   
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-38  Score=244.03  Aligned_cols=197  Identities=28%  Similarity=0.283  Sum_probs=155.7

Q ss_pred             hHHHHHHHhhhhceeEe-ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           6 LGDTVEDVGAEVRSWVI-NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      ..+.++.++..+.+.+. .|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            56788888888888865 488899999999999999999998887 7888888888999999999999999999999887


Q ss_pred             C-CCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          85 A-DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        85 ~-~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      . +++..+..|.||||+|+..++.+++++|                |||+|+..|+.+++++|+++|++++..+      
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------  187 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN------  187 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC------
T ss_pred             CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC------
Confidence            7 8888888899999999999998888887                8999999999999999999998888877      


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCC
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH  209 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~  209 (235)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..++.++++++.......
T Consensus       188 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            78889999999999999999999999999999999999999999998999988887665443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8e-37  Score=235.52  Aligned_cols=195  Identities=23%  Similarity=0.154  Sum_probs=158.1

Q ss_pred             HHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHH
Q psy5702          32 HRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR  111 (235)
Q Consensus        32 ~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  111 (235)
                      ..+...++.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++
T Consensus        28 ~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  107 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ  107 (253)
T ss_dssp             ------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             chhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            44778899999999999844444566899999999999999999999999999999999999999999999999999999


Q ss_pred             Hh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCC
Q psy5702         112 LL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA  174 (235)
Q Consensus       112 ~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga  174 (235)
                      +|                 |+|.|+..++.+++++|+++|++++..+      ..|.||||+|+..|+.+++++|+++|+
T Consensus       108 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d------~~g~t~L~~A~~~~~~~~v~~Ll~~ga  181 (253)
T 1yyh_A          108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD------DLGKSALHWAAAVNNVDAAVVLLKNGA  181 (253)
T ss_dssp             HHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC------TTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88                 8999999999999999999999999888      789999999999999999999999999


Q ss_pred             CCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCC
Q psy5702         175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       175 ~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                      +++.+|..|.||||+|+..+..++++.++...  .+....+..|.+++..+...|+.+++
T Consensus       182 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          182 NKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCccccccCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999888763  33444566788999999998887664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-36  Score=232.43  Aligned_cols=205  Identities=27%  Similarity=0.305  Sum_probs=148.7

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLE---KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                      .+|..|.||||+|++.|+.+++++|++   ..+..++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            467778888888888888888777776   24667777777788888888888888888888888888777777778888


Q ss_pred             HHHHHhCChhHHHHh--------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHH
Q psy5702          99 HDAAEKGCVEMVRLL--------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAA  158 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l--------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~  158 (235)
                      |+|+..++.+++++|                    |+|.|+..|+.+++++|++.|++++..+.     ..|.||||+|+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~~g~t~L~~A~  158 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-----KSGRSPLIHAV  158 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-----TTCCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-----cCCCcHHHHHH
Confidence            888887777777766                    77788888888888888887777766542     45778888888


Q ss_pred             hcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCC
Q psy5702         159 EKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       159 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      ..++.+++++|+++|++++.+|..|.||||+|+..+..++++.++..  +.+....+..|.+++..+...|+.++
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--GADSSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--CCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence            88888888888888888887777788888888777777777777654  22333334455566666666555444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.9e-37  Score=238.83  Aligned_cols=198  Identities=29%  Similarity=0.270  Sum_probs=168.8

Q ss_pred             EeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy5702          21 VINKHHGETPLHRAARLGYIDAVAYCLEKFSHG---PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        21 ~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                      +.+|..|.||||+|++.|+.+++++|++. +..   ++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            56899999999999999999999999998 554   77889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHh---------------------------------------------------------------H
Q psy5702          98 LHDAAEKGCVEMVRLL---------------------------------------------------------------P  114 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l---------------------------------------------------------------~  114 (235)
                      ||+|+..++.+++++|                                                               |
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999998765                                                               7


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       115 l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                      ||+|+..|+.+++++|+++|++++..+.     ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC-----CCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            9999999999999999999999988762     34999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHhhccccCCCCCcccccCCCcccccc
Q psy5702         195 TRKLLQYHLADVRGHEAPKWDFAGPASCFDKQ  226 (235)
Q Consensus       195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (235)
                      ..++++.++...-  +....+..|.+++..+.
T Consensus       237 ~~~~v~~Ll~~ga--~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          237 NPILARLLRAHGA--PEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             CHHHHHHHHHTTC--CCCCCC-----------
T ss_pred             CcHHHHHHHHcCC--CcCcCCCcccccccccC
Confidence            8888888776533  23333334444444433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-36  Score=228.70  Aligned_cols=195  Identities=28%  Similarity=0.266  Sum_probs=181.7

Q ss_pred             hHHHHHHHhhhhceeEee-cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           6 LGDTVEDVGAEVRSWVIN-KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      ..++++.++..+.+++.. |..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            346677888888888765 89999999999999999999999998 8889999999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          85 A-DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        85 ~-~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      . +++..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------  155 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN------  155 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC------
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC------
Confidence            7 8899999999999999999999999998                9999999999999999999999999888      


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++++.....
T Consensus       156 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            789999999999999999999999999999999999999999999999999998876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.3e-36  Score=228.40  Aligned_cols=194  Identities=29%  Similarity=0.338  Sum_probs=179.4

Q ss_pred             chHHHHHHHhh----hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHH
Q psy5702           5 SLGDTVEDVGA----EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLL   80 (235)
Q Consensus         5 ~~~~~~~~~~~----~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   80 (235)
                      +..+.++.++.    .+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|
T Consensus        20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L   98 (241)
T 1k1a_A           20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRAL   98 (241)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34556666665    7899999999999999999999999999999998 888999999999999999999999999999


Q ss_pred             HhcCC----CCCCCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy5702          81 LMYGA----DPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLL  139 (235)
Q Consensus        81 l~~g~----~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~  139 (235)
                      ++.++    +++..+..|.||||+|+..++.+++++|                 |+|.|+..|+.+++++|+++|++++.
T Consensus        99 l~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A           99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA  178 (241)
T ss_dssp             HHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99987    8889999999999999999999999988                 99999999999999999999999998


Q ss_pred             hhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         140 ASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       140 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++.+...
T Consensus       179 ~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          179 QM------YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             BC------TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             cC------CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            88      7899999999999999999999999999999999999999999999999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6e-36  Score=228.12  Aligned_cols=202  Identities=27%  Similarity=0.342  Sum_probs=148.4

Q ss_pred             eeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          19 SWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        19 ~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                      +++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            4556777777888888888888888777777 667777777778888888888888888888877777777777777888


Q ss_pred             HHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcC
Q psy5702          99 HDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG  161 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~  161 (235)
                      |+|+..++.+++++|                 |++.|+..++.+++++|+++|++++..+      ..|.||||+|+..|
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD------NEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccC------CCCCCHHHHHHHCC
Confidence            888777777777776                 7777777778888888887777777666      67778888888888


Q ss_pred             CHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccccc
Q psy5702         162 CVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVG  229 (235)
Q Consensus       162 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  229 (235)
                      +.+++++|+++|++++.+|..|.||||+|+..+..++++.++...  .+....+..|.+++..+...|
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD--SDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCCHHHHSCTTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC--CCCCccCCCCCCHHHHHHHHH
Confidence            888888888878887777777788888887777777777776552  222333344445554444433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-35  Score=225.90  Aligned_cols=193  Identities=30%  Similarity=0.373  Sum_probs=176.7

Q ss_pred             chHHHHHHHhhhh-ceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGAEV-RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~~~-~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +..+.++.++..+ ...+.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.
T Consensus        17 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   95 (231)
T 3aji_A           17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK   95 (231)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence            3456666666654 44677899999999999999999999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      |++++.++..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      
T Consensus        96 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------  169 (231)
T 3aji_A           96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD------  169 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC------
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC------
Confidence            999999999999999999999999999988                8999999999999999999999999888      


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++.+.+..
T Consensus       170 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            789999999999999999999999999999999999999999998877777776554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.3e-36  Score=236.00  Aligned_cols=198  Identities=28%  Similarity=0.306  Sum_probs=180.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|
T Consensus        51 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g  129 (299)
T 1s70_B           51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (299)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            456889999999999999999999999999999999999999998 8899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh-------------------------------------------HHHHHHHc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------------------------------------PLHDAAEK  121 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-------------------------------------------~l~~a~~~  121 (235)
                      ++++..+..|.||||+|+..++.++++.+                                           |||+|+..
T Consensus       130 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            99999999999999999988877776542                                           79999999


Q ss_pred             CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHH
Q psy5702         122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY  201 (235)
Q Consensus       122 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~  201 (235)
                      |+.+++++|+++|++++..+      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|++. ..++++.
T Consensus       210 g~~~~v~~Ll~~g~d~~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~  282 (299)
T 1s70_B          210 GYTEVLKLLIQARYDVNIKD------YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEE  282 (299)
T ss_dssp             TCHHHHHHHHTTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCcC------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHH
Confidence            99999999999999999888      7899999999999999999999999999999999999999999875 4556666


Q ss_pred             hhccccCCC
Q psy5702         202 HLADVRGHE  210 (235)
Q Consensus       202 ~~~~~~~~~  210 (235)
                      +........
T Consensus       283 l~~~~~~~~  291 (299)
T 1s70_B          283 LQKKQNLLH  291 (299)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHhhhh
Confidence            555544433

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.9e-35  Score=225.38  Aligned_cols=193  Identities=30%  Similarity=0.314  Sum_probs=181.7

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++..+..|.||||+|+..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|++.|
T Consensus        22 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  100 (237)
T 3b7b_A           22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG  100 (237)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            456889999999999999999999999999999999999999988 8889999999999999999999999999999998


Q ss_pred             -CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          85 -ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        85 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                       .+++..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      
T Consensus       101 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------  174 (237)
T 3b7b_A          101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN------  174 (237)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC------
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC------
Confidence             89999999999999999999999999998                8999999999999999999999999887      


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+|+|+..+....+.++..
T Consensus       175 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999887765555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.5e-36  Score=232.65  Aligned_cols=222  Identities=27%  Similarity=0.327  Sum_probs=193.6

Q ss_pred             cchHHHHHHHhhhhceeEee-cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGAEVRSWVIN-KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      .+..+.++.++..+.+++.+ +..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++
T Consensus        15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34568899999999999888 78899999999999999999999998 88888999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh--------------------------HHHHHHHcCCHHHHHHHHHc-CC
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------PLHDAAEKGCVEMVRLLLSY-GA  135 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l--------------------------~l~~a~~~~~~~~~~~l~~~-g~  135 (235)
                      .|++++..+..|.||||+|+..++.+++++|                          |+|.|+..|+.+++++|++. |.
T Consensus        94 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  173 (285)
T 1wdy_A           94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  173 (285)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred             cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999887                          79999999999999999987 89


Q ss_pred             CCcchhhhhhhccCCCchHHHHHhcCC----HHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCC
Q psy5702         136 DPLLASYAVYFLSLPSRPLHDAAEKGC----VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA  211 (235)
Q Consensus       136 ~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~  211 (235)
                      +++..+      ..|.||||.|+..+.    .+++++|+++|++++.+|..|.||||+|+..+..+++++++... +.+.
T Consensus       174 ~~~~~~------~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~  246 (285)
T 1wdy_A          174 DVNACD------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEI  246 (285)
T ss_dssp             CTTCCC------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-SCCT
T ss_pred             CCCccC------CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc-CCCc
Confidence            988887      789999999999998    88999999999999999999999999999999999999888732 2223


Q ss_pred             CcccccCCCcccccccccCCCC
Q psy5702         212 PKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      ...+..|.+++..+...|+.++
T Consensus       247 ~~~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          247 NDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccCCCCCcHHHHHHHcCcHHH
Confidence            3344566677777766665544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=233.60  Aligned_cols=196  Identities=27%  Similarity=0.268  Sum_probs=142.7

Q ss_pred             chHHHHHHHhhhhce--------eEeecCCCCcHHHHHHHcCCHH-HHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHH
Q psy5702           5 SLGDTVEDVGAEVRS--------WVINKHHGETPLHRAARLGYID-AVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD   75 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~--------~~~~d~~g~~~L~~A~~~~~~~-~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~   75 (235)
                      +-.+.++.++..+.+        +...|..|.+||++|+..+..+ ++++|++. |.+++..|..|.||||+|+..|+.+
T Consensus        22 G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~~~  100 (269)
T 4b93_B           22 GDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGRAD  100 (269)
T ss_dssp             TCHHHHHHHHTCC----------------------------------------C-CCCTTCCCTTSCCHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            445777888776654        4567788889999998877654 67777776 8888888999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy5702          76 IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLL  139 (235)
Q Consensus        76 ~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~  139 (235)
                      ++++|++.|++++..+..|.||+++|+..++.+++++|                |||+|+..|+.+++++|+++|++++.
T Consensus       101 ~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~  180 (269)
T 4b93_B          101 LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA  180 (269)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc
Confidence            99999999999999889999999999999999988887                89999999999999999999999998


Q ss_pred             hhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhh-HHHHHHhhcccc
Q psy5702         140 ASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETT-RKLLQYHLADVR  207 (235)
Q Consensus       140 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~-~~~l~~~~~~~~  207 (235)
                      .+      ..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++++. .++++.+++...
T Consensus       181 ~~------~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          181 SN------NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             BC------TTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             cc------cCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            88      799999999999999999999999999999999999999999998764 566665555433

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-35  Score=235.09  Aligned_cols=193  Identities=27%  Similarity=0.293  Sum_probs=175.8

Q ss_pred             hHHHHHHHhhh-hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           6 LGDTVEDVGAE-VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      ..+.++.++.. +.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|
T Consensus        36 ~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  114 (351)
T 3utm_A           36 NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG  114 (351)
T ss_dssp             CHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC
Confidence            34555555554 888889999999999999999999999999998 8889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh---------------------------------------------------
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL---------------------------------------------------  113 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l---------------------------------------------------  113 (235)
                      ++++..+..|.||||+|+..++.+++++|                                                   
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKV  194 (351)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHH
Confidence            99999999999999999999999998876                                                   


Q ss_pred             -------------------HHHHHHHc---CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH
Q psy5702         114 -------------------PLHDAAEK---GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS  171 (235)
Q Consensus       114 -------------------~l~~a~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  171 (235)
                                         |+|.|+..   +..+++++|++.|++++..+      ..|.||||+|+..|+.+++++|++
T Consensus       195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~  268 (351)
T 3utm_A          195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN------KDFMTPLHVAAERAHNDVMEVLHK  268 (351)
T ss_dssp             HHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcC------CCCCCHHHHHHHcCCHHHHHHHHH
Confidence                               57778877   56889999999999999888      789999999999999999999999


Q ss_pred             CCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         172 YGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       172 ~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +|++++.+|..|.||||+|+..+..++++.++..
T Consensus       269 ~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          269 HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            9999999999999999999999999998888776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=229.04  Aligned_cols=197  Identities=25%  Similarity=0.281  Sum_probs=152.4

Q ss_pred             eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy5702          20 WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH   99 (235)
Q Consensus        20 ~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   99 (235)
                      ++.+|..|+||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            455777888888888888888888888887 6777778888888888888888888888888888888888888888888


Q ss_pred             HHHHhCChhHHHHh---------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH
Q psy5702         100 DAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus       100 ~a~~~~~~~~~~~l---------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      +|+..++.+++++|               |+|+|+..|+.+++++|+++|++++..+      ..|.||||+|+..++.+
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d------~~g~t~L~~A~~~~~~~  204 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI------SHLGTPLYLACENQQRA  204 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCB------TTTBCHHHHHHHTTCHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHcCcHH
Confidence            88888888888877               7888888888888888888888877776      67888888888888888


Q ss_pred             HHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccc
Q psy5702         165 MVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQ  226 (235)
Q Consensus       165 ~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (235)
                      ++++|+++|++++. +..|.||||+|+..+..++++.++..  +.+....+..|.+++..+.
T Consensus       205 ~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--GADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHhc
Confidence            88888888888874 77788888888887777777777654  2223333334444444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=227.50  Aligned_cols=189  Identities=28%  Similarity=0.324  Sum_probs=174.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|
T Consensus        70 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (285)
T 3d9h_A           70 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG  148 (285)
T ss_dssp             TCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence            456889999999999999999999999999999999999999998 8899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      ++++..+ .|.||||+|+..++.+++++|                |++.|+..|+.+++++|++.|++++. +      .
T Consensus       149 ~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~------~  220 (285)
T 3d9h_A          149 ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G------K  220 (285)
T ss_dssp             CCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-C------B
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-C------C
Confidence            9998655 499999999999999999998                99999999999999999999999884 4      6


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      .|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..  .++++.++.
T Consensus       221 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll~  274 (285)
T 3d9h_A          221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLE  274 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHHHHHH
Confidence            899999999999999999999999999999999999999999953  344444443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-35  Score=244.49  Aligned_cols=218  Identities=29%  Similarity=0.404  Sum_probs=163.2

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA   85 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   85 (235)
                      ..+.++.++..+.+.+..+..|.||||+|+..++.+++++|++. +..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  236 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  236 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34666777777777777777777777777777777777777766 55666666777777777777777777777777777


Q ss_pred             CCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccC
Q psy5702          86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL  149 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  149 (235)
                      +++..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      ..
T Consensus       237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~  310 (437)
T 1n11_A          237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT------RM  310 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC------SS
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC------CC
Confidence            7777777777777777777777777776                7888888888888888888888777776      67


Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccccc
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVG  229 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  229 (235)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++..  +.+....+..|.+++..+...|
T Consensus       311 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN--GASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             CCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCSSSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcC
Confidence            88888888888888888888888888888888888888888888888888877765  3333334455666666666666


Q ss_pred             CCC
Q psy5702         230 YEP  232 (235)
Q Consensus       230 ~~~  232 (235)
                      |.+
T Consensus       389 ~~~  391 (437)
T 1n11_A          389 YIS  391 (437)
T ss_dssp             CHH
T ss_pred             cHH
Confidence            543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-35  Score=243.70  Aligned_cols=194  Identities=34%  Similarity=0.431  Sum_probs=154.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..++++.++..+.+.+.+|..|.||||+|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++.|
T Consensus        25 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  103 (437)
T 1n11_A           25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN  103 (437)
T ss_dssp             TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence            456788888888888888888999999999999999999999988 7788888888999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      ++++..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      .
T Consensus       104 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------~  177 (437)
T 1n11_A          104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG------K  177 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------S
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC------C
Confidence            99988888889999999988888888877                7888888888888888888887777665      5


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+..++++.++..
T Consensus       178 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  234 (437)
T 1n11_A          178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY  234 (437)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            666666666666666666666666666666666666666666666655665555543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-34  Score=220.02  Aligned_cols=190  Identities=25%  Similarity=0.352  Sum_probs=158.7

Q ss_pred             chHHHHHHHhhhhceeEe-ecCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCC-CCCCCCcHHHHHHhcCCHHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRSWVI-NKHHGETPLHRAARLGYIDAVAYCLEKFS--HGPAP-KDNAGYTPLHEAASHGWLDIARLL   80 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~d~~g~~~L~~A~~~~~~~~v~~li~~~~--~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L   80 (235)
                      +..+.++.++..+.+... +|..|.||||+|+..|+.+++++|++. +  .+.+. .+..|.||||+|+..|+.+++++|
T Consensus        13 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            345777888887776654 788899999999999999999998887 4  33344 778889999999999999999999


Q ss_pred             HhcC--CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcC-CCCcchh
Q psy5702          81 LMYG--ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG-ADPLLAS  141 (235)
Q Consensus        81 l~~g--~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g-~~~~~~~  141 (235)
                      ++.|  ++++..+..|.||||+|+..++.+++++|                |+|+|+..|+.+++++|++.| ++++..+
T Consensus        92 l~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d  171 (228)
T 2dzn_A           92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  171 (228)
T ss_dssp             HSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred             HhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence            9888  88888888899999999988888888887                888888888888999888888 8887777


Q ss_pred             hhhhhccCCCchHHHHHhcCCHHHHHHHH-HCCCCCCCccccCCChhhhccchhhHHHHHH
Q psy5702         142 YAVYFLSLPSRPLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLSITSDETTRKLLQY  201 (235)
Q Consensus       142 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~  201 (235)
                            ..|+||||+|+..++.+++++|+ ++|++++.+|..|+||+++|.+.+..+++..
T Consensus       172 ------~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~  226 (228)
T 2dzn_A          172 ------KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN  226 (228)
T ss_dssp             ------TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHHHHHT
T ss_pred             ------CCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHHHHHh
Confidence                  78888999999988889988888 7888888888888899998888776666543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6.1e-35  Score=227.79  Aligned_cols=183  Identities=28%  Similarity=0.251  Sum_probs=160.1

Q ss_pred             chHHHHHHHhhhhce---eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRS---WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL   81 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~---~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   81 (235)
                      +..++++.++..+.+   ++.+|..|+||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+
T Consensus        20 g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll   98 (282)
T 1oy3_D           20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLL   98 (282)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhhh
Confidence            456889999998887   889999999999999999999999999998 8899999999999999999999999999999


Q ss_pred             hcCCC-----------------------------------------------CCCCCCCCCcHHHHHHHhCChhHHHHh-
Q psy5702          82 MYGAD-----------------------------------------------PSDSAIGGIRPLHDAAEKGCVEMVRLL-  113 (235)
Q Consensus        82 ~~g~~-----------------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~l-  113 (235)
                      +.|++                                               ++..+..|.||||+|+..++.+++++| 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  178 (282)
T 1oy3_D           99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (282)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            98765                                               677888999999999999999999998 


Q ss_pred             ----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCC
Q psy5702         114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPL  177 (235)
Q Consensus       114 ----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~  177 (235)
                                      |||+|+..|+.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++
T Consensus       179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM------YGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc------cCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence                            9999999999999999999999999988      799999999999999999999999999999


Q ss_pred             CccccCCChhhhccchh
Q psy5702         178 LASYAGHTPLSITSDET  194 (235)
Q Consensus       178 ~~~~~g~t~l~~a~~~~  194 (235)
                      .+|..|.||+++|....
T Consensus       253 ~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          253 EDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CCC--------------
T ss_pred             cCCCcccccccccCCcc
Confidence            99999999999998654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-34  Score=223.38  Aligned_cols=195  Identities=29%  Similarity=0.285  Sum_probs=183.5

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+.+.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|
T Consensus        50 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  128 (285)
T 1wdy_A           50 SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG  128 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence            456899999999999999999999999999999999999999998 8889999999999999999999999999999999


Q ss_pred             CCCCCC----------CCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCC----HHHHHHHHHc
Q psy5702          85 ADPSDS----------AIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGC----VEMVRLLLSY  133 (235)
Q Consensus        85 ~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~----~~~~~~l~~~  133 (235)
                      ++++..          +..|.||||+|+..++.+++++|                 |+|.|+..+.    .+++++|+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~  208 (285)
T 1wdy_A          129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT
T ss_pred             CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc
Confidence            999887          77899999999999999999988                 8999999999    9999999999


Q ss_pred             CCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         134 GADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       134 g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      |++++..+      ..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..+..++++.++...
T Consensus       209 g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          209 GADVNVRG------ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             TCCSSCCC------TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CCCCCCcC------CCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            99999888      789999999999999999999999 89999999999999999999988888887776653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.6e-36  Score=227.64  Aligned_cols=180  Identities=29%  Similarity=0.313  Sum_probs=162.5

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFS---HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                      ..|..|.||||+|+..|+.+++++|++...   ..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            468899999999999999999999988633   26788999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCChhHHHHh----------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc-CCCchHH
Q psy5702          99 HDAAEKGCVEMVRLL----------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS-LPSRPLH  155 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l----------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~t~L~  155 (235)
                      |+|+..++.+++++|                      |||+|+..|+.+++++|+++|++++..+      . .|.||||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~~g~tpL~  156 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE------PCNGRTALH  156 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC------TTTCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC------CCCCCCHHH
Confidence            999999999999887                      8999999999999999999999999887      5 8999999


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         156 DAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       156 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++....
T Consensus       157 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            9999999999999999999999999999999999999999999988877644

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.5e-34  Score=213.82  Aligned_cols=175  Identities=25%  Similarity=0.262  Sum_probs=164.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      ..+.+|||.|+..|+.+.++.|+...+.+++..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            56889999999999999999999987778899999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcC-CCCcchhhhhhhccCCCchHHHHHhcCC----
Q psy5702         105 GCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYG-ADPLLASYAVYFLSLPSRPLHDAAEKGC----  162 (235)
Q Consensus       105 ~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~t~L~~A~~~~~----  162 (235)
                      ++.+++++|                 |+|.|+..|+.+++++|+++| .+++..+      ..|.||||+|+..+.    
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN------DFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC------TTSCCHHHHHHHSSCCSHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC------CCCCCHHHHHHHhccchhh
Confidence            999999988                 899999999999999999999 8888888      789999999999998    


Q ss_pred             -HHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         163 -VEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       163 -~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                       .+++++|+++|++++.+|..|.||||+|+..+..++++.++..
T Consensus       157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence             9999999999999999999999999999999999999988753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.4e-35  Score=222.03  Aligned_cols=199  Identities=28%  Similarity=0.302  Sum_probs=178.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  103 (235)
                      +..+.+|||.|++.|+.+.++++++..+...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45788999999999999999999998677778889999999999999999999999999999999999999999999999


Q ss_pred             hCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHH
Q psy5702         104 KGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVR  167 (235)
Q Consensus       104 ~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~  167 (235)
                      .++.+++++|                |+|.|+..++.+++++|+++|++++..+      ..|.||||+|+..|+.++++
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------HYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHTCHHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC------CCCCcHHHHHHHcCCHHHHH
Confidence            9999999998                8999999999999999999999998887      78999999999999999999


Q ss_pred             HHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccC
Q psy5702         168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGY  230 (235)
Q Consensus       168 ~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  230 (235)
                      +|+++|++++.+|..|.||||+|+..+..+++++++..  +.+....+..|.+++..+...|.
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHhhHH
Confidence            99999999999999999999999999999999988876  33333344455666665554443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.2e-35  Score=237.83  Aligned_cols=192  Identities=22%  Similarity=0.218  Sum_probs=177.0

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc-
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY-   83 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-   83 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +..  ..+..|.||||+|+..|+.+++++|++. 
T Consensus        31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  107 (364)
T 3ljn_A           31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEV--HSLWHGQKPIHLAVMANKTDLVVALVEGA  107 (364)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC--CCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC--ccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            456889999999999999999999999999999999999999998 553  3445899999999999999999999998 


Q ss_pred             ---CCCCCC-----------------CCCCCCcHHHHHHHhC--ChhHHHHh----------------HHHHHHHcCCHH
Q psy5702          84 ---GADPSD-----------------SAIGGIRPLHDAAEKG--CVEMVRLL----------------PLHDAAEKGCVE  125 (235)
Q Consensus        84 ---g~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~l----------------~l~~a~~~~~~~  125 (235)
                         |++++.                 .+..|.||||+|+..+  +.+++++|                |||+|+..|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  187 (364)
T 3ljn_A          108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE  187 (364)
T ss_dssp             HHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence               887776                 8888999999999999  99999998                999999999999


Q ss_pred             HHHHHHHcCCC-----CcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHH
Q psy5702         126 MVRLLLSYGAD-----PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       126 ~~~~l~~~g~~-----~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~  200 (235)
                      ++++|+++|++     ++..+      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++
T Consensus       188 ~v~~Ll~~g~~~~~~~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~  261 (364)
T 3ljn_A          188 ALDLMMDTVPSKSSLRLDYAN------KQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK  261 (364)
T ss_dssp             HHHHHHHHCSCSSSCCTTCCC------TTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHH
T ss_pred             HHHHHHhcccccccccccccC------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Confidence            99999999988     77777      78999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhcc
Q psy5702         201 YHLAD  205 (235)
Q Consensus       201 ~~~~~  205 (235)
                      .++..
T Consensus       262 ~Ll~~  266 (364)
T 3ljn_A          262 ELLQK  266 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6e-34  Score=215.73  Aligned_cols=195  Identities=26%  Similarity=0.258  Sum_probs=169.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHH
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG--ADPSD-SAIGGIRPLHDAA  102 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~-~~~~g~t~l~~a~  102 (235)
                      .|.||||+|++.|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             --CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            37899999999999999999999966666678999999999999999999999999999  55555 7789999999999


Q ss_pred             HhCChhHHHHh------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH
Q psy5702         103 EKGCVEMVRLL------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus       103 ~~~~~~~~~~l------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      ..++.+++++|                  |+|.|+..++.+++++|+++|++++..+      ..|.||||+|+..|+.+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD------KFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC------TTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccC------CCCCCHHHHHHHcCCHH
Confidence            99999999988                  8999999999999999999999999888      78999999999999999


Q ss_pred             HHHHHHHCC-CCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccc
Q psy5702         165 MVRLLLSYG-ADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQM  227 (235)
Q Consensus       165 ~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (235)
                      ++++|+++| ++++.+|..|.||||+|+..+..++++.++... +.+....+..|.+++..+..
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~-ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-CCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CCCCCccCCCCCcHHHHHHH
Confidence            999999999 999999999999999999999999988887222 22333334445555555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-34  Score=234.63  Aligned_cols=193  Identities=20%  Similarity=0.191  Sum_probs=179.0

Q ss_pred             HHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC---C
Q psy5702           9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG---A   85 (235)
Q Consensus         9 ~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~   85 (235)
                      .++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.+   +
T Consensus       148 ~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          148 EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            34556689999999999999999999999999999999998 8899999999999999999999999999999988   8


Q ss_pred             CCCCCCCCCCcHHHHHHHhC---ChhHHHHh------------------------HHHHHHHcCCHHHHHHHHHcC-CCC
Q psy5702          86 DPSDSAIGGIRPLHDAAEKG---CVEMVRLL------------------------PLHDAAEKGCVEMVRLLLSYG-ADP  137 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~---~~~~~~~l------------------------~l~~a~~~~~~~~~~~l~~~g-~~~  137 (235)
                      +++..+..|.||||+|+..+   +.+++++|                        |||.|+..|+.+++++|++.+ +++
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence            99999999999999999987   77888876                        799999999999999999886 899


Q ss_pred             cchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccC
Q psy5702         138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRG  208 (235)
Q Consensus       138 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~  208 (235)
                      +..+      ..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..++++++......
T Consensus       307 n~~d------~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          307 DKQD------EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TCCC------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             cCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            8888      7899999999999999999999999999999999999999999999999999998876443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.6e-34  Score=206.80  Aligned_cols=153  Identities=37%  Similarity=0.508  Sum_probs=141.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChh
Q psy5702          29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVE  108 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  108 (235)
                      .+|+.||+.|+.++|+.|++. |++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..+   
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g---   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG---   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC---
Confidence            369999999999999999998 8999999999999999999999999999999999999999999999999977764   


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhh
Q psy5702         109 MVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS  188 (235)
Q Consensus       109 ~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  188 (235)
                                    +.+++++|+++|++++..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        82 --------------~~~~v~~Ll~~gadvn~~d------~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  141 (169)
T 4gpm_A           82 --------------HKEVVKLLISKGADVNAKD------SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD  141 (169)
T ss_dssp             --------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             --------------CHHHHHHHHHCcCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence                          5566788899999999888      78999999999999999999999999999999999999999


Q ss_pred             hccchhhHHHHHHhhcc
Q psy5702         189 ITSDETTRKLLQYHLAD  205 (235)
Q Consensus       189 ~a~~~~~~~~l~~~~~~  205 (235)
                      +|+..+..++++.++..
T Consensus       142 ~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          142 LAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             HHHHTTCHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHC
Confidence            99998888888777654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=217.22  Aligned_cols=201  Identities=26%  Similarity=0.262  Sum_probs=181.3

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.
T Consensus        19 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~   98 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY   98 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence            34578899999999999999999999999999999999999999984444445556699999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCC-HHHHHHHHHcCCCCcchhhhhhh
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGC-VEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~-~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      |++++..+..|.||||+|+..++.+++++|                |++.|+..+. .+++++|++.|++++..+.    
T Consensus        99 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~----  174 (240)
T 3eu9_A           99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK----  174 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT----
T ss_pred             CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc----
Confidence            999999999999999999999999999998                8999996665 8899999999999988772    


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCC
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH  209 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~  209 (235)
                       ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++++......+
T Consensus       175 -~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          175 -YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             -TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             -cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence             38999999999999999999999999999999999999999999999999999988765443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.4e-34  Score=234.13  Aligned_cols=206  Identities=23%  Similarity=0.240  Sum_probs=181.8

Q ss_pred             ceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy5702          18 RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        18 ~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                      .+.+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~   87 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP   87 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH
Confidence            44556788999999999999999999999998 889999999999999999999999999999999996654  568999


Q ss_pred             HHHHHHhCChhHHHHh-------------------------------------HHHHHHHcC--CHHHHHHHHHcCCCCc
Q psy5702          98 LHDAAEKGCVEMVRLL-------------------------------------PLHDAAEKG--CVEMVRLLLSYGADPL  138 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l-------------------------------------~l~~a~~~~--~~~~~~~l~~~g~~~~  138 (235)
                      ||+|+..++.+++++|                                     |||+|+..|  +.+++++|+++|++++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            9999999999998876                                     799999999  9999999999999999


Q ss_pred             chhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC-----CCCccccCCChhhhccchhhHHHHHHhhccccCCCCCc
Q psy5702         139 LASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD-----PLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPK  213 (235)
Q Consensus       139 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~  213 (235)
                      ..+      ..|.||||+|+..|+.+++++|+++|++     ++..|..|.||||+|+..+..++++.++..  +.+...
T Consensus       168 ~~d------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--gad~~~  239 (364)
T 3ljn_A          168 AKD------KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM--GIDVNM  239 (364)
T ss_dssp             CCC------TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT--TCCTTC
T ss_pred             ccC------CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCC
Confidence            888      7899999999999999999999999999     999999999999999999999999998876  334445


Q ss_pred             ccccCCCcccccccccCCCCC
Q psy5702         214 WDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       214 ~~~~~~~~~~~~~~~g~~~~~  234 (235)
                      .+..|.+++..+...|+..++
T Consensus       240 ~d~~g~tpL~~A~~~g~~~~v  260 (364)
T 3ljn_A          240 EDNEHTVPLYLSVRAAMVLLT  260 (364)
T ss_dssp             CCTTSCCHHHHHHHTCCHHHH
T ss_pred             CCCCCCCHHHHHHHhChHHHH
Confidence            556677788877777765543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.7e-34  Score=225.17  Aligned_cols=191  Identities=20%  Similarity=0.168  Sum_probs=171.4

Q ss_pred             hHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q psy5702           6 LGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA   85 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   85 (235)
                      ..++.+.+...  +++.+|..|.||||+|+..|+.+++++|++. +.+++..  +|.||||+|+..|+.+++++|++.|+
T Consensus        12 ~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A           12 SKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             HHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            34444444443  5788999999999999999999999999998 7777766  49999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      +++.++..|.||||+|+..++.+++++|                 |+|+|+..|+.+++++|+++|++....       .
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------~  159 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-------A  159 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-------S
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-------c
Confidence            9999999999999999999999999988                 899999999999999999999876322       2


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCCh-hhhccchhhHHHHHHhhccccC
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP-LSITSDETTRKLLQYHLADVRG  208 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~a~~~~~~~~l~~~~~~~~~  208 (235)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..+..++++.++...-.
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence            68899999999999999999999999999999999998 9999999999999988776433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.1e-35  Score=236.32  Aligned_cols=215  Identities=20%  Similarity=0.150  Sum_probs=186.2

Q ss_pred             ceeEeec-CCCCcHHHHHHHcCCHHHHHHHHH-------hCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCC
Q psy5702          18 RSWVINK-HHGETPLHRAARLGYIDAVAYCLE-------KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSD   89 (235)
Q Consensus        18 ~~~~~~d-~~g~~~L~~A~~~~~~~~v~~li~-------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   89 (235)
                      .+++.+| ..|+||||+|+..|+.+++++|+.       ..+.+++..|..|.||||+|+..|+.+++++|++.|++++.
T Consensus       115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~  194 (373)
T 2fo1_E          115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI  194 (373)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence            3556677 799999999999999888887763       34899999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCChhHHHHh-------------------HHHHHHHcC---CHHHHHHHHHcCCCCcchhhh--hh
Q psy5702          90 SAIGGIRPLHDAAEKGCVEMVRLL-------------------PLHDAAEKG---CVEMVRLLLSYGADPLLASYA--VY  145 (235)
Q Consensus        90 ~~~~g~t~l~~a~~~~~~~~~~~l-------------------~l~~a~~~~---~~~~~~~l~~~g~~~~~~~~~--~~  145 (235)
                      .+..|.||||+|+..++.+++++|                   |+|+|+..+   +.+++++|+++|++++.....  ..
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  274 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  274 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence            999999999999999999999987                   899999988   899999999999998763210  11


Q ss_pred             hccCCCchHHHHHhcCCHHHHHHHHHCC-CCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccc
Q psy5702         146 FLSLPSRPLHDAAEKGCVEMVRLLLSYG-ADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFD  224 (235)
Q Consensus       146 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  224 (235)
                      .+..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..+..++++.++..  +.+....+..|.+++..
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--gad~~~~d~~g~t~l~~  352 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASVEAVDATDHTARQL  352 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCSSSCCHHHH
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccCCCCCCCCHHHH
Confidence            1258999999999999999999999875 99999999999999999999999999998876  33444455667888888


Q ss_pred             cccccCCCCC
Q psy5702         225 KQMVGYEPLA  234 (235)
Q Consensus       225 ~~~~g~~~~~  234 (235)
                      +...|+..++
T Consensus       353 A~~~g~~~iv  362 (373)
T 2fo1_E          353 AQANNHHNIV  362 (373)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            8888876554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=223.32  Aligned_cols=200  Identities=24%  Similarity=0.228  Sum_probs=149.9

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCC-------CCCCCCCCCCcHHHHHHhcCCH-HHHHHHHhcCCCCCCCCCC
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSH-------GPAPKDNAGYTPLHEAASHGWL-DIARLLLMYGADPSDSAIG   93 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~-------~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~   93 (235)
                      -+|..+.++|+.|+..|+.++|++|++....       .++..+..|.|||+.|+..+.. .++++|++.|++++.+|..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            3677788999999999999999999987332       2456678899999999998876 5889999999999999999


Q ss_pred             CCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH
Q psy5702          94 GIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA  157 (235)
Q Consensus        94 g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A  157 (235)
                      |.||||+|+..|+.+++++|                |++.|+..++.+++++|++.|++++..+      ..|+||||+|
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d------~~g~TpL~~A  159 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD------LSGNTPLIYA  159 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC------TTCCCHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC------CCCCCHHHHH
Confidence            99999999999999999998                8999999999999999999999999888      7999999999


Q ss_pred             HhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccccc
Q psy5702         158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVG  229 (235)
Q Consensus       158 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  229 (235)
                      +..|+.+++++|+++|++++.++..|.||||+|+..+..++++.++..  +.+....+..|.+++..+...|
T Consensus       160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~--Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH--GASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999999999999999999999999999999999888765  3333444555666776665544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.5e-33  Score=200.73  Aligned_cols=151  Identities=36%  Similarity=0.446  Sum_probs=136.7

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+-.+.|+.|+..|.+++.+|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.
T Consensus        14 ~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~   92 (169)
T 4gpm_A           14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK   92 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            4567899999999999999999999999999999999999999998 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.+|..|.||||+|+..+                 +.+++++|+++|++++..+      ..|+||||+|++.|+.
T Consensus        93 gadvn~~d~~G~TpLh~A~~~g-----------------~~~~v~~Ll~~gad~~~~d------~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           93 GADVNAKDSDGRTPLHHAAENG-----------------HKEVVKLLISKGADVNTSD------SDGRTPLDLAREHGNE  149 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCH
T ss_pred             cCCCCCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCccccC------CCCCCHHHHHHHcCCH
Confidence            9999999999999999987765                 5566788899999999888      8999999999999999


Q ss_pred             HHHHHHHHCCCCCCC
Q psy5702         164 EMVRLLLSYGADPLL  178 (235)
Q Consensus       164 ~~v~~Ll~~ga~~~~  178 (235)
                      +++++|+++||+++.
T Consensus       150 ~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          150 EVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHHCCCCcCC
Confidence            999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.1e-32  Score=219.54  Aligned_cols=182  Identities=31%  Similarity=0.387  Sum_probs=168.6

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..++++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|
T Consensus        69 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  147 (351)
T 3utm_A           69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG  147 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456899999999999999999999999999999999999999998 8889999999999999999999999999999999


Q ss_pred             CCCCCCC------------------------------------------------------CCCCcHHHHHHHh---CCh
Q psy5702          85 ADPSDSA------------------------------------------------------IGGIRPLHDAAEK---GCV  107 (235)
Q Consensus        85 ~~~~~~~------------------------------------------------------~~g~t~l~~a~~~---~~~  107 (235)
                      ++++..+                                                      ..|.||||+|+..   +..
T Consensus       148 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHH
Confidence            9987654                                                      4567899999988   446


Q ss_pred             hHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH
Q psy5702         108 EMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS  171 (235)
Q Consensus       108 ~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  171 (235)
                      +++++|                |+|.|+..|+.+++++|+++|++++..+      ..|+||||+|+..|+.+++++|++
T Consensus       228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d------~~g~t~L~~A~~~~~~~~v~~Ll~  301 (351)
T 3utm_A          228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD------SLGQTALHRAALAGHLQTCRLLLS  301 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHcCcHHHHHHHHH
Confidence            777777                9999999999999999999999999888      799999999999999999999999


Q ss_pred             CCCCCCCccccCCChhhhccch
Q psy5702         172 YGADPLLASYAGHTPLSITSDE  193 (235)
Q Consensus       172 ~ga~~~~~~~~g~t~l~~a~~~  193 (235)
                      +|++++.+|..|.||+++|...
T Consensus       302 ~gad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          302 YGSDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHSCHH
T ss_pred             cCCCCCCcCCCCCChhhhhhHH
Confidence            9999999999999999999543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-32  Score=220.63  Aligned_cols=216  Identities=25%  Similarity=0.237  Sum_probs=168.0

Q ss_pred             cchHHHHHHHhhhhceeEeecC-CCCcHHHHHHHcCCHHHHHHHHHhCCCC-----------------------------
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKH-HGETPLHRAARLGYIDAVAYCLEKFSHG-----------------------------   53 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~-~g~~~L~~A~~~~~~~~v~~li~~~~~~-----------------------------   53 (235)
                      .+-.+.|+.|++.|.+++.++. .|+||||+|+..|+.+++++|+++ ++.                             
T Consensus        35 ~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence            3456899999999999998875 499999999999999999999987 544                             


Q ss_pred             ----CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHhCChhHHHHh------
Q psy5702          54 ----PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS----------AIGGIRPLHDAAEKGCVEMVRLL------  113 (235)
Q Consensus        54 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~l------  113 (235)
                          ++..|..|.||||+|+..|+.+++++|++.|++++..          +..|.||||+|+..|+.+++++|      
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga  193 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  193 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence                3455677888888888888888888888888877643          33577888888888888888876      


Q ss_pred             -----------HHHHHHHcCC----HHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC-CCCCC
Q psy5702         114 -----------PLHDAAEKGC----VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY-GADPL  177 (235)
Q Consensus       114 -----------~l~~a~~~~~----~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~~  177 (235)
                                 +++.++..+.    .+++++|+++|++++..+      ..|+||||+|+..++.+++++|++. |++++
T Consensus       194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d------~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn  267 (337)
T 4g8k_A          194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG------ERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  267 (337)
T ss_dssp             CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCC------GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred             CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence                       4555444332    357788888888888777      6889999999999999999999984 89999


Q ss_pred             CccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCC
Q psy5702         178 LASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       178 ~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      .+|..|+||||+|+..+..++++.++...-..+       ..+++..+...|+.++
T Consensus       268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-------~~~~L~~A~~~~~~~i  316 (337)
T 4g8k_A          268 DTDSDGKTALLLAVELKLKKIAELLCKRGASTD-------CGDLVMTARRNYDHSL  316 (337)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-------TCCHHHHHHHTTCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------CCCHHHHHHHcCCHHH
Confidence            999999999999999888888888876532221       2235666666665544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.4e-33  Score=205.01  Aligned_cols=162  Identities=27%  Similarity=0.229  Sum_probs=150.9

Q ss_pred             eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy5702          20 WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH   99 (235)
Q Consensus        20 ~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   99 (235)
                      ++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            456899999999999999999999999998 7788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCc
Q psy5702         100 DAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA  179 (235)
Q Consensus       100 ~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  179 (235)
                      +|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+
T Consensus       107 ~A~~~~-----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A          107 WSIIFG-----------------YSEMSYFLLEHGANVNDRN------LEGETPLIVASKYGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             HHHHHT-----------------CHHHHHHHHHTTCCSSCCC------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             HHHHcC-----------------CHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            988765                 4566788899999999888      78999999999999999999999999999999


Q ss_pred             cccCCChhhhccchhhHHHHHHhhcc
Q psy5702         180 SYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       180 ~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      |..|.||+++|+..+..++++.+...
T Consensus       164 ~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          164 DLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             CTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            99999999999999999999988754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-32  Score=215.86  Aligned_cols=200  Identities=24%  Similarity=0.283  Sum_probs=169.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      ..|.||||.||..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            3567899999999999999999998 788999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHh----------------HHHHHHHcCCHHHHHHHHHc-CCCCcchhhh--------------------hhhc
Q psy5702         105 GCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSY-GADPLLASYA--------------------VYFL  147 (235)
Q Consensus       105 ~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~-g~~~~~~~~~--------------------~~~~  147 (235)
                      ++.+++++|                |++.|+..+..++++.++.. +.+++.....                    ...+
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence            999999998                89999999999998887754 5554332110                    0012


Q ss_pred             cCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccc
Q psy5702         148 SLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQM  227 (235)
Q Consensus       148 ~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (235)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++...  .+....+..|.+++..+..
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999998888763  2333334455555555543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.1e-31  Score=194.11  Aligned_cols=156  Identities=28%  Similarity=0.360  Sum_probs=145.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG  105 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  105 (235)
                      .|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            588999999999999999999999 7889999999999999999999999999999999999999999999999988765


Q ss_pred             ChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCC
Q psy5702         106 CVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHT  185 (235)
Q Consensus       106 ~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  185 (235)
                                       +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.|
T Consensus        81 -----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  137 (167)
T 3v31_A           81 -----------------YTDIVKMLLDCGVDVNEYD------WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN  137 (167)
T ss_dssp             -----------------CHHHHHHHHHHTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----------------CHHHHHHHHHCCCCCCcCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence                             4566788899999999887      78999999999999999999999999999999999999


Q ss_pred             hhhhccchhhHHHHHHhhcc
Q psy5702         186 PLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       186 ~l~~a~~~~~~~~l~~~~~~  205 (235)
                      |+++|+..+..++++.+...
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          138 SMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHH
Confidence            99999999888888877654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.8e-32  Score=214.82  Aligned_cols=186  Identities=20%  Similarity=0.160  Sum_probs=170.5

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++..+.+++.+|  |.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.
T Consensus        41 ~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  117 (285)
T 3kea_A           41 DNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK  117 (285)
T ss_dssp             TTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            345788999999999988774  99999999999999999999998 889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC-CcHHHHHHHhCChhHHHHh---------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhc
Q psy5702          84 GADPSDSAIGG-IRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFL  147 (235)
Q Consensus        84 g~~~~~~~~~g-~t~l~~a~~~~~~~~~~~l---------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  147 (235)
                      |++++.++..| .||||+|+..++.+++++|               |+|.|+..|+.+++++|+++|++++..+      
T Consensus       118 ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~------  191 (285)
T 3kea_A          118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN------  191 (285)
T ss_dssp             CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC------
T ss_pred             CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCccc------
Confidence            99999999999 8999999999999999988               9999999999999999999999999888      


Q ss_pred             cCCCch-HHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         148 SLPSRP-LHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       148 ~~~~t~-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      ..|.|| ||+|+..++.+++++|+++|++++..|.       .|+..+..++++.++..
T Consensus       192 ~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~  243 (285)
T 3kea_A          192 SLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEK  243 (285)
T ss_dssp             CCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHc
Confidence            789998 9999999999999999999999999884       45556667777766554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.3e-31  Score=193.71  Aligned_cols=162  Identities=25%  Similarity=0.257  Sum_probs=145.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      ..+.++||.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            56789999999999999999999998888999999999999999999999999999999999999999999999998776


Q ss_pred             CChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCC
Q psy5702         105 GCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGH  184 (235)
Q Consensus       105 ~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  184 (235)
                      +                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.
T Consensus        83 ~-----------------~~~~v~~Ll~~g~~~~~~d------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  139 (179)
T 3f6q_A           83 G-----------------HRDIVQKLLQYKADINAVN------EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE  139 (179)
T ss_dssp             T-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred             C-----------------CHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence            5                 4566788899999999888      7999999999999999999999999999999999999


Q ss_pred             ChhhhccchhhHHHHHHhhccccCC
Q psy5702         185 TPLSITSDETTRKLLQYHLADVRGH  209 (235)
Q Consensus       185 t~l~~a~~~~~~~~l~~~~~~~~~~  209 (235)
                      ||+++|+..+..++++.+.......
T Consensus       140 tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          140 MPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            9999999988888887776654433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.1e-31  Score=193.58  Aligned_cols=160  Identities=32%  Similarity=0.420  Sum_probs=144.8

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA  101 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  101 (235)
                      +.|..|.++||.|++.|+.+++++|++..+...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            35778899999999999999999999977778888889999999999999999999999999999999999999999998


Q ss_pred             HHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccc
Q psy5702         102 AEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY  181 (235)
Q Consensus       102 ~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  181 (235)
                      +..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|.
T Consensus        83 ~~~~-----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           83 CSYG-----------------HYEVAELLVKHGAVVNVAD------LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHTT-----------------CHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcC-----------------cHHHHHHHHhCCCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            7765                 5566788899999999888      7899999999999999999999999999999999


Q ss_pred             cCCChhhhccchhhHHHHHHhhcc
Q psy5702         182 AGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       182 ~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .|.||+|+|.. +..++++.+...
T Consensus       140 ~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A          140 DGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             TSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             CCCChhHhHhc-CChHHHHHHhhc
Confidence            99999999887 677888887654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=5.8e-32  Score=205.93  Aligned_cols=203  Identities=21%  Similarity=0.184  Sum_probs=180.0

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA-IGGIRPLHD  100 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~  100 (235)
                      ..|..|.++|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++... ..|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            3577899999999999999999999998 78899999999999999999999999999999999987654 459999999


Q ss_pred             HHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCC-H
Q psy5702         101 AAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC-V  163 (235)
Q Consensus       101 a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~-~  163 (235)
                      |+..++.+++++|                |++.|+..|+.+++++|+++|++++..+      ..|.||||+|+..+. .
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~------~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD------QNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHCCSS
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC------CCCCcHHHHHHHhCChH
Confidence            9999999999998                8999999999999999999999998887      789999999997666 8


Q ss_pred             HHHHHHHHCCCCCCCccc-cCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCC
Q psy5702         164 EMVRLLLSYGADPLLASY-AGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       164 ~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      +++++|++.|++++..+. .|.||||+|+..+..+++++++..  +.+....+..|.+++..+...|+..+
T Consensus       157 ~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~  225 (240)
T 3eu9_A          157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWM  225 (240)
T ss_dssp             TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            999999999999999997 899999999999999999988876  34444445566777777777666544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=2.4e-32  Score=218.02  Aligned_cols=174  Identities=21%  Similarity=0.242  Sum_probs=151.2

Q ss_pred             hHHHHHHHhhhhceeEe-ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC---HHHHHHHH
Q psy5702           6 LGDTVEDVGAEVRSWVI-NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW---LDIARLLL   81 (235)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll   81 (235)
                      ..++++.+...+.+++. +|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+   .++++.|+
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll  187 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  187 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence            45778888899999999 899999999999999999999999998 89999999999999999999998   67888888


Q ss_pred             hcC-CCCCCCCCCCCcHHHHHHH----hCChhHHHHh------------------------------------HHHHHHH
Q psy5702          82 MYG-ADPSDSAIGGIRPLHDAAE----KGCVEMVRLL------------------------------------PLHDAAE  120 (235)
Q Consensus        82 ~~g-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~l------------------------------------~l~~a~~  120 (235)
                      +.+ ++++.++..|.||||+|+.    .++.++++++                                    |++.|+.
T Consensus       188 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~  267 (327)
T 1sw6_A          188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  267 (327)
T ss_dssp             HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH
Confidence            875 7799999999999999998    7888888776                                    2333332


Q ss_pred             cCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       121 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                            +++|+++  +++..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus       268 ------~~~Ll~~--~~n~~d------~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ------LKWIIAN--MLNAQD------SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ------HHHHHHH--TTTCCC------TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             ------HHHHHHh--CCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence                  6677776  455555      78999999999999999999999999999999999999999998753

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=2.4e-31  Score=192.76  Aligned_cols=160  Identities=34%  Similarity=0.392  Sum_probs=145.1

Q ss_pred             EeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy5702          21 VINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHD  100 (235)
Q Consensus        21 ~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  100 (235)
                      ......+.++|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            34556678899999999999999999998 88899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         101 AAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       101 a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                      |+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|
T Consensus        87 A~~~~-----------------~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  143 (169)
T 2y1l_E           87 AALFG-----------------HLEIVEVLLKNGADVNAND------MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD  143 (169)
T ss_dssp             HHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcC-----------------CHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            77765                 5566788899999998887      789999999999999999999999999999999


Q ss_pred             ccCCChhhhccchhhHHHHHHhhc
Q psy5702         181 YAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       181 ~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ..|.||+++|+..+..++++.+..
T Consensus       144 ~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          144 KFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=8.8e-32  Score=209.91  Aligned_cols=178  Identities=23%  Similarity=0.254  Sum_probs=159.3

Q ss_pred             HHHHHHHhhhhce--eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH-----hcCCHHHHHH
Q psy5702           7 GDTVEDVGAEVRS--WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAA-----SHGWLDIARL   79 (235)
Q Consensus         7 ~~~~~~~~~~~~~--~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~   79 (235)
                      .+.++.++..+.+  ++.+|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+     ..++.+++++
T Consensus        89 ~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~  168 (276)
T 4hbd_A           89 LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQ  168 (276)
T ss_dssp             HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHH
Confidence            3455556655555  77899999999999999999999999999955589999999999999999     6688999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHh
Q psy5702          80 LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE  159 (235)
Q Consensus        80 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~  159 (235)
                      |++.|.+++..+..|.||||+|+..+                 +.+++++|+++|++++..+      ..|+||||+|+.
T Consensus       169 Ll~~g~~~~~~~~~g~tpLh~A~~~g-----------------~~~~v~~Ll~~gad~n~~d------~~G~TpLh~A~~  225 (276)
T 4hbd_A          169 LFRLGNINAKASQAGQTALMLAVSHG-----------------RVDVVKALLACEADVNVQD------DDGSTALMCACE  225 (276)
T ss_dssp             HHHHSCTTCCCTTTCCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHH
T ss_pred             HHHcCCCccccCCCCCCHHHHHHHcC-----------------CHHHHHHHHhCCCCCCCCC------CCCCCHHHHHHH
Confidence            99999999999999999999987765                 5566788899999999988      899999999999


Q ss_pred             cCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         160 KGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       160 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      .|+.+++++|++ .|++++.+|..|.||||+|+..+..++++.++....
T Consensus       226 ~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          226 HGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999 899999999999999999999999999999887643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=1.7e-32  Score=211.47  Aligned_cols=175  Identities=25%  Similarity=0.219  Sum_probs=156.4

Q ss_pred             HHHHHHhhhhceeEe----ecCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCC-----------CCCCCCCcHHHHHH
Q psy5702           8 DTVEDVGAEVRSWVI----NKHHGETPLHRAARL---GYIDAVAYCLEKFSHGPA-----------PKDNAGYTPLHEAA   69 (235)
Q Consensus         8 ~~~~~~~~~~~~~~~----~d~~g~~~L~~A~~~---~~~~~v~~li~~~~~~~~-----------~~~~~g~t~L~~A~   69 (235)
                      .+++.++..+.+++.    +|..|.||||+|+..   |+.+++++|++. +.+.+           ..|..|.||||+|+
T Consensus        20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHH
T ss_pred             HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHH
Confidence            577888889999998    899999999999999   999999999997 44433           23477999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCCCCCC-------------CCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH---c
Q psy5702          70 SHGWLDIARLLLMYGADPSDSAIG-------------GIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS---Y  133 (235)
Q Consensus        70 ~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~---~  133 (235)
                      ..|+.+++++|++.|++++.++..             |.||||+|+..+                 +.+++++|++   +
T Consensus        99 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~-----------------~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK-----------------QWDVVTYLLENPHQ  161 (256)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT-----------------CHHHHHHHHHCSSC
T ss_pred             HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC-----------------CHHHHHHHHhcccc
Confidence            999999999999999999999886             999999977764                 5567788899   9


Q ss_pred             CCCCcchhhhhhhccCCCchHHHHHh--cCCHH-------HHHHHHHCCCCC-------CCccccCCChhhhccchhhHH
Q psy5702         134 GADPLLASYAVYFLSLPSRPLHDAAE--KGCVE-------MVRLLLSYGADP-------LLASYAGHTPLSITSDETTRK  197 (235)
Q Consensus       134 g~~~~~~~~~~~~~~~~~t~L~~A~~--~~~~~-------~v~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~~  197 (235)
                      |++++..+      ..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+..+..+
T Consensus       162 ga~~n~~d------~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          162 PASLEATD------SLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             CCCTTCCC------TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCcCccC------CCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence            99999988      899999999999  78888       999999999999       899999999999999999999


Q ss_pred             HHHHhhccc
Q psy5702         198 LLQYHLADV  206 (235)
Q Consensus       198 ~l~~~~~~~  206 (235)
                      +++.++...
T Consensus       236 ~v~~Ll~~g  244 (256)
T 2etb_A          236 IFRHILQRE  244 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhCC
Confidence            999887764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.1e-31  Score=194.99  Aligned_cols=158  Identities=28%  Similarity=0.310  Sum_probs=142.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      +.+|||.|+..|+.+.+++|++.....++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG-   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT-
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC-
Confidence            4689999999999999999999866658889999999999999999999999999999999999999999999977765 


Q ss_pred             hhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCCh
Q psy5702         107 VEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP  186 (235)
Q Consensus       107 ~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  186 (235)
                                      +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus        81 ----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  138 (172)
T 3v30_A           81 ----------------YTDIVGLLLERDVDINIYD------WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP  138 (172)
T ss_dssp             ----------------CHHHHHHHHTTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ----------------CHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence                            5566788899999999888      789999999999999999999999999999999999999


Q ss_pred             hhhccchhhHHHHHHhhcccc
Q psy5702         187 LSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       187 l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      ||+|+..+..++++.+.....
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A          139 MDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHH
Confidence            999999888888877665543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=5.8e-31  Score=187.61  Aligned_cols=151  Identities=32%  Similarity=0.346  Sum_probs=139.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      ..++||.|++.|+.+++++|++. +.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG-   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-
Confidence            35899999999999999999998 55555 5889999999999999999999999999999999999999999988765 


Q ss_pred             hhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCCh
Q psy5702         107 VEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP  186 (235)
Q Consensus       107 ~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  186 (235)
                                      +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus        79 ----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           79 ----------------HANIVEVLLKHGADVNAKD------MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             ----------------CHHHHHHHHTTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ----------------hHHHHHHHHHcCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence                            4566788899999999888      789999999999999999999999999999999999999


Q ss_pred             hhhccchhhHHHHHHh
Q psy5702         187 LSITSDETTRKLLQYH  202 (235)
Q Consensus       187 l~~a~~~~~~~~l~~~  202 (235)
                      +++|+..+..++++++
T Consensus       137 l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999998875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.8e-32  Score=210.09  Aligned_cols=160  Identities=28%  Similarity=0.270  Sum_probs=109.3

Q ss_pred             cCCCCcHHHHHHHc---CCHHHHHHHHHhCC----------CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q psy5702          24 KHHGETPLHRAARL---GYIDAVAYCLEKFS----------HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS   90 (235)
Q Consensus        24 d~~g~~~L~~A~~~---~~~~~v~~li~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   90 (235)
                      |..|.||||+|+..   |+.+++++|++.+.          ......|..|.||||+|+..|+.+++++|++.|++++..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            44555555555543   55555555555411          011113344555555555555555555555555555554


Q ss_pred             CC--------------CCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH---cCCCCcchhhhhhhccCCCch
Q psy5702          91 AI--------------GGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS---YGADPLLASYAVYFLSLPSRP  153 (235)
Q Consensus        91 ~~--------------~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~~~~~t~  153 (235)
                      +.              .|.||||+                 |+..|+.+++++|++   +|++++..+      ..|+||
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~-----------------A~~~g~~~~v~~Ll~~~~~gad~~~~d------~~g~tp  187 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSL-----------------AACTNQLAIVKFLLQNSWQPADISARD------SVGNTV  187 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHH-----------------HHHTTCHHHHHHHHHCSSCCCCTTCCC------TTSCCH
T ss_pred             ccccccccccccccccCCCCHHHH-----------------HHHcCCHHHHHHHHhcccCCCCceeeC------CCCCcH
Confidence            43              34455554                 555667788889999   899999888      789999


Q ss_pred             HHHHHhcCC---------HHHHHHHHHCCCCCC-------CccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         154 LHDAAEKGC---------VEMVRLLLSYGADPL-------LASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       154 L~~A~~~~~---------~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      ||+|+..++         .+++++|+++|++++       .+|..|.||||+|+..+..++++.++...
T Consensus       188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE  256 (273)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC
Confidence            999999888         799999999999986       58999999999999999888888877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=7e-31  Score=188.75  Aligned_cols=155  Identities=25%  Similarity=0.310  Sum_probs=142.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG  105 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  105 (235)
                      ...+|||.|+..|+.+++++|++. +.+++..+..|.||||+|+. |+.+++++|++.|++++.++..|.||||+|+..+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            456899999999999999999987 88899999999999999999 9999999999999999999999999999988765


Q ss_pred             ChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC-CCCccccCC
Q psy5702         106 CVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD-PLLASYAGH  184 (235)
Q Consensus       106 ~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~  184 (235)
                                       +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++ ++.+|..|.
T Consensus        82 -----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  138 (162)
T 1ihb_A           82 -----------------FLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD  138 (162)
T ss_dssp             -----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             -----------------CHHHHHHHHHcCCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCC
Confidence                             4566788899999999888      7899999999999999999999999998 699999999


Q ss_pred             ChhhhccchhhHHHHHHhhcc
Q psy5702         185 TPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       185 t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      ||||+|+..+..++++.++..
T Consensus       139 t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          139 TACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999888754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=6.3e-30  Score=193.01  Aligned_cols=167  Identities=25%  Similarity=0.211  Sum_probs=159.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..++.+++++|++.....++..+..|.||||+|+..++.+++++|++.|
T Consensus        36 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  115 (223)
T 2f8y_A           36 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH  115 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence            45688999999999999999999999999999999999999999866688999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      ++++..+..|.||||+|+..++.+++++|                |+|.|+..|+.+++++|+++|++++..+      .
T Consensus       116 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------~  189 (223)
T 2f8y_A          116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD------H  189 (223)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------T
T ss_pred             CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc------c
Confidence            99999999999999999999999999998                9999999999999999999999999887      7


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCC
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPL  177 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~  177 (235)
                      .|.|||++|+..++.+++++|+++|+...
T Consensus       190 ~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          190 MDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            89999999999999999999999998754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.5e-30  Score=185.94  Aligned_cols=154  Identities=27%  Similarity=0.344  Sum_probs=142.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      +.+|||.|+..|+.+.+++|++..+.+++..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG-   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-
Confidence            46899999999999999999998666888999999999999 9999999999999999999999999999999987764 


Q ss_pred             hhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCCh
Q psy5702         107 VEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP  186 (235)
Q Consensus       107 ~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  186 (235)
                                      +.+++++|+++|++++..+      ..|.||||+|+..|+.+++++|+++ ++++.+|..|.||
T Consensus        80 ----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~  136 (156)
T 1bd8_A           80 ----------------FLDTLKVLVEHGADVNVPD------GTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP  136 (156)
T ss_dssp             ----------------CHHHHHHHHHTTCCSCCCC------TTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred             ----------------cHHHHHHHHHcCCCCCCcC------CCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence                            5566788899999999888      7899999999999999999999999 9999999999999


Q ss_pred             hhhccchhhHHHHHHhhcc
Q psy5702         187 LSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       187 l~~a~~~~~~~~l~~~~~~  205 (235)
                      ||+|+..+..++++.+...
T Consensus       137 l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          137 LELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHhh
Confidence            9999999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=4.2e-31  Score=201.31  Aligned_cols=170  Identities=24%  Similarity=0.235  Sum_probs=156.9

Q ss_pred             hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC------CCCC
Q psy5702          17 VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD------PSDS   90 (235)
Q Consensus        17 ~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~   90 (235)
                      +.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++      ++..
T Consensus        35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  113 (236)
T 1ikn_D           35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  113 (236)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhcc
Confidence            347889999999999999999999999999987 889999999999999999999999999999999876      4667


Q ss_pred             CCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCch
Q psy5702          91 AIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRP  153 (235)
Q Consensus        91 ~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~  153 (235)
                      +..|.||||+|+..++.+++++|                 |+|+|+..|+.+++++|+++|++++..+      ..|.||
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~------~~g~tp  187 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT------YQGYSP  187 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC------TTCCCG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc------CCCCCH
Confidence            88899999999999999999998                 8999999999999999999999999888      799999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCCC--CccccCCChhhhccch
Q psy5702         154 LHDAAEKGCVEMVRLLLSYGADPL--LASYAGHTPLSITSDE  193 (235)
Q Consensus       154 L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~a~~~  193 (235)
                      ||+|+..++.+++++|+++|++..  ..+..|.||.+.+.+.
T Consensus       188 l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          188 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             GGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999999876  7888999999988754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=4.8e-31  Score=203.75  Aligned_cols=179  Identities=22%  Similarity=0.140  Sum_probs=154.8

Q ss_pred             HHHHHHHhhhhceeEeec----CCCCcHHHHHH---HcCCHHHHHHHHHhCC----------CCCCCCCCCCCcHHHHHH
Q psy5702           7 GDTVEDVGAEVRSWVINK----HHGETPLHRAA---RLGYIDAVAYCLEKFS----------HGPAPKDNAGYTPLHEAA   69 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d----~~g~~~L~~A~---~~~~~~~v~~li~~~~----------~~~~~~~~~g~t~L~~A~   69 (235)
                      ..+++.+...+.+++.++    ..|.||||+|+   +.|+.+++++|++...          ...+..|..|.||||+|+
T Consensus        22 ~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  101 (260)
T 3jxi_A           22 EGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI  101 (260)
T ss_dssp             TTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH
T ss_pred             HHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH
Confidence            345666677888888776    77999999999   7799999999999721          334455668999999999


Q ss_pred             hcCCHHHHHHHHhcCCCCCCCC--------------CCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH---
Q psy5702          70 SHGWLDIARLLLMYGADPSDSA--------------IGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS---  132 (235)
Q Consensus        70 ~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~---  132 (235)
                      ..|+.+++++|++.|++++..+              ..|.||||+|+..+                 +.+++++|++   
T Consensus       102 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g-----------------~~~~v~~Ll~~~~  164 (260)
T 3jxi_A          102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN-----------------QPHIVHYLTENGH  164 (260)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT-----------------CHHHHHHHHHCSS
T ss_pred             HcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC-----------------CHHHHHHHHhccc
Confidence            9999999999999999999998              58999999977764                 5566788899   


Q ss_pred             cCCCCcchhhhhhhccCCCchHHHHHhcCC---------HHHHHHHHHCCCCC-------CCccccCCChhhhccchhhH
Q psy5702         133 YGADPLLASYAVYFLSLPSRPLHDAAEKGC---------VEMVRLLLSYGADP-------LLASYAGHTPLSITSDETTR  196 (235)
Q Consensus       133 ~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~---------~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~  196 (235)
                      +|++++..+      ..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..+..
T Consensus       165 ~ga~~~~~d------~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          165 KQADLRRQD------SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             CCCCTTCCC------TTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             cCCCCcccC------CCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            899999888      899999999998887         79999999999999       67999999999999999999


Q ss_pred             HHHHHhhccccC
Q psy5702         197 KLLQYHLADVRG  208 (235)
Q Consensus       197 ~~l~~~~~~~~~  208 (235)
                      ++++.++.....
T Consensus       239 ~~v~~Ll~~g~~  250 (260)
T 3jxi_A          239 GIFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC
Confidence            999988876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=6.1e-30  Score=204.78  Aligned_cols=185  Identities=22%  Similarity=0.169  Sum_probs=158.0

Q ss_pred             HHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC----------CCCCCCcHHHHHHhcCCHHHHH
Q psy5702           9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP----------KDNAGYTPLHEAASHGWLDIAR   78 (235)
Q Consensus         9 ~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~----------~~~~g~t~L~~A~~~~~~~~v~   78 (235)
                      .+..+...+.+++.+|..|.||||+|+..|+.++++++++. +.+++.          .+..|.||||+|++.|+.++++
T Consensus       107 ~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~  185 (337)
T 4g8k_A          107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  185 (337)
T ss_dssp             HHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred             hhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHH
Confidence            33444455556777889999999999999999999999998 666653          3456899999999999999999


Q ss_pred             HHHh-cCCCCCCCCCCCCcHHHHHHHhCCh----hHHHHh----------------HHHHHHHcCCHHHHHHHHHc-CCC
Q psy5702          79 LLLM-YGADPSDSAIGGIRPLHDAAEKGCV----EMVRLL----------------PLHDAAEKGCVEMVRLLLSY-GAD  136 (235)
Q Consensus        79 ~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~----~~~~~l----------------~l~~a~~~~~~~~~~~l~~~-g~~  136 (235)
                      +|++ .|++++.++..|.|+++.++..+..    .++++|                |||.|+..|+.++++.|+.. |++
T Consensus       186 ~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  265 (337)
T 4g8k_A          186 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  265 (337)
T ss_dssp             HHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred             HHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence            9996 5999999999999999987765442    355555                89999999999999999985 789


Q ss_pred             CcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         137 PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       137 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      ++..+      ..|+||||+|++.|+.+++++|+++|++++.     .+|||+|+..+..++++.++..
T Consensus       266 vn~~d------~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          266 INDTD------SDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             TTCBC------TTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCcC------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHC
Confidence            99888      8999999999999999999999999999875     4699999998888887776654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.5e-29  Score=186.78  Aligned_cols=162  Identities=23%  Similarity=0.291  Sum_probs=151.2

Q ss_pred             chHHHHHHHhhhhc-eeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH-h
Q psy5702           5 SLGDTVEDVGAEVR-SWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL-M   82 (235)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~   82 (235)
                      +..+.++.++..+. +++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+ .
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   94 (201)
T 3hra_A           16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKH   94 (201)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            34566777777766 8999999999999999999999999999998 8899999999999999999999999999999 5


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCC-----HHHHHHHHHcCCCCcch
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGC-----VEMVRLLLSYGADPLLA  140 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~-----~~~~~~l~~~g~~~~~~  140 (235)
                      .+++++..+..|.||||+|+..++.+++++|                 |+|.|+..++     .+++++|+++|++++..
T Consensus        95 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A           95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            6789999999999999999999999999998                 9999999998     99999999999999988


Q ss_pred             hhhhhhccCCCchHHHHHhcCCHHHHHHHHHCC
Q psy5702         141 SYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG  173 (235)
Q Consensus       141 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  173 (235)
                      +      ..|.||||+|+..|+.+++++|+++|
T Consensus       175 ~------~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          175 D------NSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             C------TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             C------CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            8      78999999999999999999999886

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=5.1e-31  Score=203.25  Aligned_cols=191  Identities=20%  Similarity=0.126  Sum_probs=148.0

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCCC----CCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCC----
Q psy5702          26 HGETPLHRAARLGYID----AVAYCLEKFSHGPAP----KDNAGYTPLHEAASH---GWLDIARLLLMYGADPSDS----   90 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~----~v~~li~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~----   90 (235)
                      .|+||||.|+..|+.+    ++++|++. +.+++.    .|..|.||||+|+..   |+.+++++|++.|++++..    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            4889999999999997    55666667 788887    899999999999999   9999999999998887633    


Q ss_pred             -------CCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhh-------hhccCCCchHHH
Q psy5702          91 -------AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV-------YFLSLPSRPLHD  156 (235)
Q Consensus        91 -------~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~t~L~~  156 (235)
                             |..|.||||+|+..+                 +.+++++|+++|++++..+...       ..+..|.||||+
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g-----------------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~  142 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKR-----------------SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL  142 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred             ccccccccccCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHH
Confidence                   367999999977764                 5566788899999998877210       000129999999


Q ss_pred             HHhcCCHHHHHHHHH---CCCCCCCccccCCChhhhccc--hhhHH-------HHH---HhhccccCCCC--CcccccCC
Q psy5702         157 AAEKGCVEMVRLLLS---YGADPLLASYAGHTPLSITSD--ETTRK-------LLQ---YHLADVRGHEA--PKWDFAGP  219 (235)
Q Consensus       157 A~~~~~~~~v~~Ll~---~ga~~~~~~~~g~t~l~~a~~--~~~~~-------~l~---~~~~~~~~~~~--~~~~~~~~  219 (235)
                      |+..|+.+++++|++   +|++++.+|..|.||||+|+.  .+..+       +++   ..+++......  ...+..|.
T Consensus       143 A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~  222 (256)
T 2etb_A          143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL  222 (256)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence            999999999999999   999999999999999999997  44444       444   44555421110  22344567


Q ss_pred             CcccccccccCCCCC
Q psy5702         220 ASCFDKQMVGYEPLA  234 (235)
Q Consensus       220 ~~~~~~~~~g~~~~~  234 (235)
                      +++..+...|+.+++
T Consensus       223 tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          223 TPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHhCCHHHH
Confidence            777777777765543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=3e-31  Score=201.39  Aligned_cols=199  Identities=19%  Similarity=0.139  Sum_probs=157.6

Q ss_pred             HHHhhhhceeEeec---CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q psy5702          11 EDVGAEVRSWVINK---HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP   87 (235)
Q Consensus        11 ~~~~~~~~~~~~~d---~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   87 (235)
                      +.++..+.+.+..+   .+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            45666666666554   4556789999999999999999998 8889999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHH--HhcCCHHH
Q psy5702          88 SDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA--AEKGCVEM  165 (235)
Q Consensus        88 ~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A--~~~~~~~~  165 (235)
                      +.+|..|.||||+|+..+                 +.+++++|+++|++++..+.     ..|.||||+|  +..++.++
T Consensus        81 n~~d~~g~tpLh~A~~~g-----------------~~~~v~~Ll~~ga~~~~~~~-----~~g~tpL~~A~a~~~~~~~~  138 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCN-----------------DTVICMALVQHGAAIFATTL-----SDGATAFEKCDPYREGYADC  138 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTT-----------------CHHHHHHHHTTTCCTTCCCS-----STTCCTGGGCCTTSTTHHHH
T ss_pred             CCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCcccccC-----CCCCCHHHHHHHHhcChHHH
Confidence            999999999999987764                 55667888999999988752     5899999999  99999999


Q ss_pred             HHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCCC
Q psy5702         166 VRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK  235 (235)
Q Consensus       166 v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  235 (235)
                      +++|+++|++++.+|..|.||++.++.....+++...+++..   ....+..|.+++..+...|+.+++|
T Consensus       139 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~---~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          139 ATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVT---VLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             HHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEE---EEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             HHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccccc---ccccCCCcccHHHHHHHcCCcceee
Confidence            999999999999999999999997666544443333333311   2234556778888888888777653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.1e-29  Score=182.87  Aligned_cols=159  Identities=23%  Similarity=0.212  Sum_probs=140.1

Q ss_pred             cchHHHHHHHhhhhce-eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGAEVRS-WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      .+..+.++.++..+.+ ++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   90 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLE   90 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHH
Confidence            3456788888888877 788999999999999999999999999998 88899999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCC
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC  162 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~  162 (235)
                      .|++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++
T Consensus        91 ~g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           91 RDVDINIYDWNGGTPLLYAVRGN-----------------HVKCVEALLARGADLTTEA------DSGYTPMDLAVALGY  147 (172)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHTC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCccccC------CCCCCHHHHHHHhCc
Confidence            99999999999999999987664                 5566788899999999888      789999999999999


Q ss_pred             HHHHHHHHHCCCCCCCccccCCCh
Q psy5702         163 VEMVRLLLSYGADPLLASYAGHTP  186 (235)
Q Consensus       163 ~~~v~~Ll~~ga~~~~~~~~g~t~  186 (235)
                      .+++++|+++|+++...+..|.||
T Consensus       148 ~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          148 RKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999999988887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=3.9e-29  Score=199.48  Aligned_cols=207  Identities=14%  Similarity=0.068  Sum_probs=151.6

Q ss_pred             chHHHHHHHhhhhceeEe-----------------ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC-CCCCCCcHHH
Q psy5702           5 SLGDTVEDVGAEVRSWVI-----------------NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP-KDNAGYTPLH   66 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-----------------~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~-~~~~g~t~L~   66 (235)
                      +..+.++.++..+.+...                 +.....+.+|.|+..+..++++.|++. +.+++. .|..|.||||
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh  136 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLH  136 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHH
Confidence            456788999988877544                 111222335777777778888888776 889998 8999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC---hhH----HHHh-------------HHHHHHH----cC
Q psy5702          67 EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC---VEM----VRLL-------------PLHDAAE----KG  122 (235)
Q Consensus        67 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~----~~~l-------------~l~~a~~----~~  122 (235)
                      +|+..|+.+++++|++.|++++.++..|.||||+|+..++   .++    ++.+             |||+|+.    .|
T Consensus       137 ~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g  216 (327)
T 1sw6_A          137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG  216 (327)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999887   333    3332             9999999    89


Q ss_pred             CHHHHHHHHHc--------------------CCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcccc
Q psy5702         123 CVEMVRLLLSY--------------------GADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA  182 (235)
Q Consensus       123 ~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  182 (235)
                      +.+++++|++.                    |++++..+      ..|.||||.|+.      +++|+++  +++.+|..
T Consensus       217 ~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~------~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~  282 (327)
T 1sw6_A          217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN------GERKDSILENLD------LKWIIAN--MLNAQDSN  282 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------------CHHHHHCS------HHHHHHH--TTTCCCTT
T ss_pred             cHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc------ccCCChhHHHHH------HHHHHHh--CCCCCCCC
Confidence            99999999987                    77888777      789999999986      8899998  58889999


Q ss_pred             CCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccc
Q psy5702         183 GHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMV  228 (235)
Q Consensus       183 g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (235)
                      |.||||+|+..+..++++.++..  +.+....+..|.+++..+...
T Consensus       283 G~TpLh~A~~~g~~~~v~~Ll~~--Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          283 GDTCLNIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHT--TCCTTCCCTTSCCGGGGTCC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHhc
Confidence            99999999999999999988865  333333444555666555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=4.8e-29  Score=178.25  Aligned_cols=145  Identities=24%  Similarity=0.284  Sum_probs=115.9

Q ss_pred             eecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCc-HHHH
Q psy5702          22 INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIR-PLHD  100 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~  100 (235)
                      ..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+ .|+.+++++|++.|++++.++..|.| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            4678899999999999999999999998 8899999999999999985 89999999999999999999999999 9999


Q ss_pred             HHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         101 AAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       101 a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                      |+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++++.+|
T Consensus        85 A~~~~-----------------~~~~v~~Ll~~ga~~~~~d------~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           85 AAREG-----------------FLDTLVVLHRAGARLDVRD------AWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             HHHHT-----------------CHHHHHHHHHHTCCSSCCC------TTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             HHHCC-----------------CHHHHHHHHHcCCCCcccC------CCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence            87765                 4566788899999999888      789999999999999999999999999999999


Q ss_pred             ccCCChhhhcc
Q psy5702         181 YAGHTPLSITS  191 (235)
Q Consensus       181 ~~g~t~l~~a~  191 (235)
                      ..|.||.+-+.
T Consensus       142 ~~g~t~~~~~~  152 (156)
T 1bi7_B          142 HARIDAAEGPS  152 (156)
T ss_dssp             -----------
T ss_pred             cCcCcccccCC
Confidence            99999987443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.8e-28  Score=175.09  Aligned_cols=146  Identities=25%  Similarity=0.262  Sum_probs=133.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+. ++.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++.|
T Consensus        16 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   93 (162)
T 1ihb_A           16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ   93 (162)
T ss_dssp             TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            45788999999999999999999999999999 999999999998 8889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCC-CcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD-PLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      ++++.++..|.||||+|+..+                 +.+++++|+++|++ ++..+      ..|.||||+|+..++.
T Consensus        94 ~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~g~~~~~~~~------~~g~t~l~~A~~~~~~  150 (162)
T 1ihb_A           94 ADVNIEDNEGNLPLHLAAKEG-----------------HLRVVEFLVKHTASNVGHRN------HKGDTACDLARLYGRN  150 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHHSCCCTTCCC------TTSCCHHHHHHHTTCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcC-----------------CHHHHHHHHHccCCCCCCcC------CCCCcHHHHHHHcCCH
Confidence            999999999999999987765                 45667888999987 47766      7899999999999999


Q ss_pred             HHHHHHHHCCCC
Q psy5702         164 EMVRLLLSYGAD  175 (235)
Q Consensus       164 ~~v~~Ll~~ga~  175 (235)
                      +++++|+++|||
T Consensus       151 ~~~~~Ll~~GAd  162 (162)
T 1ihb_A          151 EVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHhCCC
Confidence            999999999986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3.1e-29  Score=184.18  Aligned_cols=160  Identities=18%  Similarity=0.139  Sum_probs=138.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASHGWL----DIARLLLMYGADPSDSAIGGIRPLHDA  101 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~a  101 (235)
                      +.++||.|++.|+.+.++.++.. +  .+..+ ..|.||||+|+..++.    +++++|++.|++++.++..|.||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            56789999999999999999986 3  34444 6799999999999975    599999999999999999999999999


Q ss_pred             HHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCC-chHHHHHhcC-----CHHHHHHHHH-CCC
Q psy5702         102 AEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-RPLHDAAEKG-----CVEMVRLLLS-YGA  174 (235)
Q Consensus       102 ~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-t~L~~A~~~~-----~~~~v~~Ll~-~ga  174 (235)
                      +..++.++..           ..+++++|+++|++++..+      ..|+ ||||+|+..+     ..+++++|++ +|+
T Consensus        83 ~~~~~~~~~~-----------~~~iv~~Ll~~Gadin~~d------~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A           83 FQGGGNDITG-----------TTELCKIFLEKGADITALY------KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL  145 (186)
T ss_dssp             HHHCTTCHHH-----------HHHHHHHHHHTTCCSSSCB------GGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred             HHcCCcchhh-----------HHHHHHHHHHCCCCCCccC------CCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence            9988765432           2478999999999999998      7899 9999999954     4569999999 999


Q ss_pred             CCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         175 DPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       175 ~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      +++.+|..|+||||+|++.+..++++.+....
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999988888887766543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1e-28  Score=172.60  Aligned_cols=134  Identities=26%  Similarity=0.353  Sum_probs=118.7

Q ss_pred             hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCC-CC
Q psy5702          17 VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIG-GI   95 (235)
Q Consensus        17 ~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~   95 (235)
                      +.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+. ++.+++++|++.|++++.++.. |.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            356778899999999999999999999999988 78888899999999999999 9999999999999999999998 89


Q ss_pred             cHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702          96 RPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus        96 t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      ||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|+|
T Consensus        80 t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~d------~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREG-----------------FLDTLVVLHRAGARLDVCD------AWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHT-----------------CHHHHHHHHHTCCCCCCCS------SSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcC-----------------CHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999977764                 4466777889999988887      7899999999999999999999998876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=9e-28  Score=173.83  Aligned_cols=146  Identities=31%  Similarity=0.374  Sum_probs=135.0

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.
T Consensus        24 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3457889999999999999999999999999999999999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.
T Consensus       103 g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E          103 GADVNANDMEGHTPLHLAAMFG-----------------HLEIVEVLLKNGADVNAQD------KFGKTAFDISIDNGNE  159 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCCCCcC------CCCCCHHHHHHHhCCH
Confidence            9999999999999999987764                 5566788899999998887      7899999999999999


Q ss_pred             HHHHHHHHCC
Q psy5702         164 EMVRLLLSYG  173 (235)
Q Consensus       164 ~~v~~Ll~~g  173 (235)
                      +++++|+++|
T Consensus       160 ~~~~~L~~~G  169 (169)
T 2y1l_E          160 DLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHcC
Confidence            9999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.8e-28  Score=189.67  Aligned_cols=167  Identities=24%  Similarity=0.211  Sum_probs=133.5

Q ss_pred             cchHHHHHHHhhhhce-------eEe----ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-------------
Q psy5702           4 QSLGDTVEDVGAEVRS-------WVI----NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDN-------------   59 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~-------~~~----~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~-------------   59 (235)
                      .+..++++.|+..+.+       ++.    +|..|.||||+|+..|+.+++++|++. +.+++..+.             
T Consensus        67 ~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~  145 (273)
T 2pnn_A           67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGF  145 (273)
T ss_dssp             TTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCC
T ss_pred             cCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccc
Confidence            3567889999998765       222    567999999999999999999999998 888888886             


Q ss_pred             -CCCcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHhCCh--hHHHHhHHHHHHHcCCHHHHHHHHHc
Q psy5702          60 -AGYTPLHEAASHGWLDIARLLLM---YGADPSDSAIGGIRPLHDAAEKGCV--EMVRLLPLHDAAEKGCVEMVRLLLSY  133 (235)
Q Consensus        60 -~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~l~~a~~~~~~--~~~~~l~l~~a~~~~~~~~~~~l~~~  133 (235)
                       .|.||||+|+..|+.+++++|++   .|++++.+|..|.||||+|+..++.  +..+++          .+++++|+++
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~----------~~~v~~Ll~~  215 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV----------TSMYNEILIL  215 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH----------HHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH----------HHHHHHHHHh
Confidence             79999999999999999999999   9999999999999999999987652  222221          5788999999


Q ss_pred             CCCCcc-------hhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCC-CCCCccccCCChh
Q psy5702         134 GADPLL-------ASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA-DPLLASYAGHTPL  187 (235)
Q Consensus       134 g~~~~~-------~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l  187 (235)
                      |++++.       .+      ..|.||||+|+..|+.+++++|+++|+ |+......+.+|-
T Consensus       216 ga~~n~~~~~~~~~d------~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          216 GAKLHPTLKLEEITN------RKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHCTTCCGGGCCC------TTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             hhhcccccccccccC------CCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            988863       44      789999999999999999999999999 8887777666654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=8.8e-28  Score=175.46  Aligned_cols=155  Identities=25%  Similarity=0.209  Sum_probs=141.7

Q ss_pred             chHHHHHHHhhh-hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGAE-VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +..+.++.++.. +.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (179)
T 3f6q_A           16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQY   94 (179)
T ss_dssp             TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            445778888887 677889999999999999999999999999998 889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.|||++|+..++.
T Consensus        95 g~~~~~~d~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           95 KADINAVNEHGNVPLHYACFWG-----------------QDQVAEDLVANGALVSICN------KYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCSSBCC------TTSCCGGGGSCHHHHH
T ss_pred             CCCCCccCCCCCCHHHHHHHcC-----------------CHHHHHHHHHCCCCcchhc------cCCCCcHHHHHHHHHH
Confidence            9999999999999999987765                 4566788899999999888      8999999999999999


Q ss_pred             HHHHHHHHCCCCCCCccccC
Q psy5702         164 EMVRLLLSYGADPLLASYAG  183 (235)
Q Consensus       164 ~~v~~Ll~~ga~~~~~~~~g  183 (235)
                      +++++|+++|++++..+..+
T Consensus       152 ~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          152 LLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHhhcCcccCCccc
Confidence            99999999999998876654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-28  Score=188.43  Aligned_cols=159  Identities=21%  Similarity=0.246  Sum_probs=105.7

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  103 (235)
                      +..|+||||.|++.++.+.++.|+++ +.+++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45799999999999999999999998 7777754 778999999999999999999999999999999999999999877


Q ss_pred             hCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccC
Q psy5702         104 KGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG  183 (235)
Q Consensus       104 ~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  183 (235)
                      .+                 +.+++++|+++|++++..+      ..|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus        80 ~g-----------------~~~~v~~Ll~~ga~~~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           80 AG-----------------HTEIVKFLVQFGVNVNAAD------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             HT-----------------CHHHHHHHHHHTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             cC-----------------CHHHHHHHHHcCCCCCccC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence            65                 4466777899999999888      789999999999999999999999999999999887


Q ss_pred             C-Chhhhc--cchhhHH---HHHHhhcccc
Q psy5702         184 H-TPLSIT--SDETTRK---LLQYHLADVR  207 (235)
Q Consensus       184 ~-t~l~~a--~~~~~~~---~l~~~~~~~~  207 (235)
                      . ||+|+|  +..+..+   ++...+++..
T Consensus       137 ~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             CCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             CcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence            7 999999  4444444   4444444443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2.5e-29  Score=194.15  Aligned_cols=193  Identities=22%  Similarity=0.165  Sum_probs=145.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCCCCC----CCCCcHHHHHH---hcCCHHHHHHHHhcCCC------
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLE----KFSHGPAPKD----NAGYTPLHEAA---SHGWLDIARLLLMYGAD------   86 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~------   86 (235)
                      +..|+++||.|++.|+.+.++.|++    . +..++..+    ..|.||||+|+   +.|+.+++++|++.|++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            4578999999999999996555555    5 77777554    77999999999   77999999999998744      


Q ss_pred             -----CCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhh--------hhhccCCCch
Q psy5702          87 -----PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYA--------VYFLSLPSRP  153 (235)
Q Consensus        87 -----~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~t~  153 (235)
                           ++..|..|.||||+|+..|                 +.+++++|+++|++++..+..        ...+..|.||
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g-----------------~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tp  143 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERR-----------------CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP  143 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSH
T ss_pred             hhcccccccccCCCCHHHHHHHcC-----------------CHHHHHHHHhCCCCcCccccccccCcccccccccCCCCH
Confidence                 4455568999999977765                 556678889999998877621        0000269999


Q ss_pred             HHHHHhcCCHHHHHHHHH---CCCCCCCccccCCChhhhccchhh---------HHHHH---HhhccccCCCC--Ccccc
Q psy5702         154 LHDAAEKGCVEMVRLLLS---YGADPLLASYAGHTPLSITSDETT---------RKLLQ---YHLADVRGHEA--PKWDF  216 (235)
Q Consensus       154 L~~A~~~~~~~~v~~Ll~---~ga~~~~~~~~g~t~l~~a~~~~~---------~~~l~---~~~~~~~~~~~--~~~~~  216 (235)
                      ||+|+..|+.+++++|++   +|++++.+|..|.||||+|+..+.         .++++   ..++++.....  ...+.
T Consensus       144 L~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~  223 (260)
T 3jxi_A          144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN  223 (260)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC
Confidence            999999999999999999   999999999999999999995332         34444   44454422111  23445


Q ss_pred             cCCCcccccccccCCCCC
Q psy5702         217 AGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       217 ~~~~~~~~~~~~g~~~~~  234 (235)
                      .|.+++..+...|+.+++
T Consensus       224 ~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          224 DGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             TSCCHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHH
Confidence            667778777777776543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2e-27  Score=171.58  Aligned_cols=149  Identities=25%  Similarity=0.258  Sum_probs=137.6

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.
T Consensus        13 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (167)
T 3v31_A           13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLLDC   91 (167)
T ss_dssp             TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            3457889999999999999999999999999999999999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..|+.
T Consensus        92 g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~g~~~~~~~------~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A           92 GVDVNEYDWNGGTPLLYAVHGN-----------------HVKCVKMLLESGADPTIET------DSGYNSMDLAVALGYR  148 (167)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHHTCH
T ss_pred             CCCCCcCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCCCCcC------CCCCCHHHHHHHcCcH
Confidence            9999999999999999987764                 5566788899999998888      7899999999999999


Q ss_pred             HHHHHHHHCCCCC
Q psy5702         164 EMVRLLLSYGADP  176 (235)
Q Consensus       164 ~~v~~Ll~~ga~~  176 (235)
                      +++++|+++++++
T Consensus       149 ~~~~~L~~~~~~~  161 (167)
T 3v31_A          149 SVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.8e-27  Score=173.93  Aligned_cols=145  Identities=23%  Similarity=0.267  Sum_probs=134.6

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..++.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|
T Consensus        46 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  124 (192)
T 2rfm_A           46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG  124 (192)
T ss_dssp             TCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            446789999999999999999999999999999999999999998 8889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      ++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+
T Consensus       125 ~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          125 ANVNDRNLEGETPLIVASKYG-----------------RSEIVKKLLELGADISARD------LTGLTAEASARIFGRQE  181 (192)
T ss_dssp             CCSSCCCTTCCCHHHHHHHHT-----------------CHHHHHHHHHTTCCTTCBC------TTSCBHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHCCCCCCCcC------CCCCCHHHHHHHhCcHH
Confidence            999999999999999987765                 4566788899999999888      79999999999999999


Q ss_pred             HHHHHHHCC
Q psy5702         165 MVRLLLSYG  173 (235)
Q Consensus       165 ~v~~Ll~~g  173 (235)
                      ++++|+++|
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999864

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4.8e-28  Score=184.89  Aligned_cols=167  Identities=20%  Similarity=0.241  Sum_probs=129.9

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++..|.++++. ..|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.
T Consensus        15 ~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   92 (239)
T 1ycs_B           15 TNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF   92 (239)
T ss_dssp             -----------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45678899999999999876 7899999999999999999999988 778999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCC-chHHHH--Hhc
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPS-RPLHDA--AEK  160 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-t~L~~A--~~~  160 (235)
                      |++++.+|..|.||||+|+..+                 +.+++++|+++|++++..+      ..|. ||||+|  +..
T Consensus        93 ga~~~~~d~~g~tpL~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~~~~t~l~~a~~~~~  149 (239)
T 1ycs_B           93 GVNVNAADSDGWTPLHCAASCN-----------------NVQVCKFLVESGAAVFAMT------YSDMQTAADKCEEMEE  149 (239)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------SSSCCCHHHHCCSSST
T ss_pred             CCCCCccCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCcceec------CCCCcchHHHHHHhhh
Confidence            9999999999999999987664                 5567788899999998887      4555 999999  788


Q ss_pred             CCHHHHHHHHHCCCCCCCc---------cccCCChhhhccchhh
Q psy5702         161 GCVEMVRLLLSYGADPLLA---------SYAGHTPLSITSDETT  195 (235)
Q Consensus       161 ~~~~~v~~Ll~~ga~~~~~---------~~~g~t~l~~a~~~~~  195 (235)
                      |+.+++++|+++|++++..         +..+.++.+++...+.
T Consensus       150 g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          150 GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             TCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             ccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999999999999998876         4557888888877654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.6e-26  Score=164.52  Aligned_cols=140  Identities=29%  Similarity=0.385  Sum_probs=128.8

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+.. .|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|
T Consensus        13 g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   90 (153)
T 1awc_B           13 GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG   90 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcC
Confidence            45688999999999876 688999999999999999999999987 8889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      ++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..|+.+
T Consensus        91 ~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~A~~~~~~~  147 (153)
T 1awc_B           91 ADVNAKDMLKMTALHWATEHN-----------------HQEVVELLIKYGADVHTQS------KFCKTAFDISIDNGNED  147 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCccccC------CCCCCHHHHHHHcCCHH
Confidence            999999999999999977764                 5566788899999999888      78999999999999999


Q ss_pred             HHHHH
Q psy5702         165 MVRLL  169 (235)
Q Consensus       165 ~v~~L  169 (235)
                      ++++|
T Consensus       148 i~~~L  152 (153)
T 1awc_B          148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=2.7e-26  Score=157.61  Aligned_cols=126  Identities=45%  Similarity=0.613  Sum_probs=116.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG  105 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  105 (235)
                      +|+||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            589999999999999999999998 7888999999999999999999999999999999999999999999999977764


Q ss_pred             ChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         106 CVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       106 ~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                                       +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|+|
T Consensus        80 -----------------~~~~~~~Ll~~g~~~~~~~------~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 -----------------HLEVVKLLLEAGADVNAKD------KNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -----------------hHHHHHHHHHcCCCCcccC------CCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                             4566778899999998887      7899999999999999999999999986

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.5e-28  Score=189.53  Aligned_cols=188  Identities=20%  Similarity=0.165  Sum_probs=156.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHH
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMYGA-DPSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~a~~  103 (235)
                      +++++|.|+..++.+.++.+++. ...  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||+|+|+.
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            45778889999999999988875 223  67899999999999999999999999999998 999999999999999884


Q ss_pred             hCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccC
Q psy5702         104 KGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG  183 (235)
Q Consensus       104 ~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  183 (235)
                      ....            ..++.+++++|++.|...+..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       155 ~~~~------------~~~~~~~v~~Ll~~g~~~~~~~------~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G  216 (276)
T 4hbd_A          155 ATLK------------TQDDIETVLQLFRLGNINAKAS------QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG  216 (276)
T ss_dssp             CCCC------------SHHHHHHHHHHHHHSCTTCCCT------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHhh------------hhhhHHHHHHHHHcCCCccccC------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence            3211            1245678899999998877776      789999999999999999999999999999999999


Q ss_pred             CChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCC
Q psy5702         184 HTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       184 ~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                      .||||+|+..+..++++.++... +.+....+..|.+++..+...|+.+++
T Consensus       217 ~TpLh~A~~~g~~~iv~~Ll~~~-gad~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          217 STALMCACEHGHKEIAGLLLAVP-SCDISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTST-TCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcC-CCCCcCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999988721 223333455677777777777765543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.8e-26  Score=166.15  Aligned_cols=145  Identities=32%  Similarity=0.405  Sum_probs=128.9

Q ss_pred             chHHHHHHHhh-hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGA-EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +-.+.++.++. .+.+....+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.
T Consensus        19 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   97 (165)
T 3twr_A           19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKH   97 (165)
T ss_dssp             TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhC
Confidence            34577777777 5667777888999999999999999999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+. ++.
T Consensus        98 g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           98 GAVVNVADLWKFTPLHEAAAKG-----------------KYEICKLLLQHGADPTKKN------RDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCTGGGSCT-TCH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCCcccC------CCCCChhHhHhc-CCh
Confidence            9999999999999999987765                 5566788899999999888      899999999877 899


Q ss_pred             HHHHHHHHCCC
Q psy5702         164 EMVRLLLSYGA  174 (235)
Q Consensus       164 ~~v~~Ll~~ga  174 (235)
                      +++++|+++|+
T Consensus       154 ~i~~~L~~~gA  164 (165)
T 3twr_A          154 DIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHhhccc
Confidence            99999999886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.4e-29  Score=192.24  Aligned_cols=173  Identities=18%  Similarity=0.109  Sum_probs=151.8

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        32 g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  110 (229)
T 2vge_A           32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHG  110 (229)
T ss_dssp             TCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456889999999999999999999999999999999999999998 8999999999999999999999999999999999


Q ss_pred             CCCCCCC-CCCCcHHHHH--HHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcC
Q psy5702          85 ADPSDSA-IGGIRPLHDA--AEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG  161 (235)
Q Consensus        85 ~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~  161 (235)
                      ++++..+ ..|.||||+|  +..                 |+.+++++|+++|++++..+      ..+.||++.+...+
T Consensus       111 a~~~~~~~~~g~tpL~~A~a~~~-----------------~~~~~v~~Ll~~ga~~~~~~------~~~~~~l~~~~~~~  167 (229)
T 2vge_A          111 AAIFATTLSDGATAFEKCDPYRE-----------------GYADCATYLADVEQSMGLMN------SGAVYALWDYSAEF  167 (229)
T ss_dssp             CCTTCCCSSTTCCTGGGCCTTST-----------------THHHHHHHHHHHHHHTTTSG------GGEEEESSCBCCSS
T ss_pred             CCcccccCCCCCCHHHHHHHHhc-----------------ChHHHHHHHHHcCCCccccc------CCchHHHHHHhhcc
Confidence            9999986 6999999997  444                 55677888999999988887      67889998665554


Q ss_pred             CHHHHHHHHHCCCC--CCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         162 CVEMVRLLLSYGAD--PLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       162 ~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ..   ++|++.|++  ++.+|..|.||||+|+..+..++++...-
T Consensus       168 ~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          168 GD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             TT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             cc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            33   577888988  67789999999999999988888876443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=6.6e-27  Score=163.31  Aligned_cols=131  Identities=30%  Similarity=0.412  Sum_probs=120.0

Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHH
Q psy5702          51 SHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLL  130 (235)
Q Consensus        51 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l  130 (235)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+. ++                 .+++++|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~-----------------~~~v~~L   63 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GS-----------------AQVAELL   63 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SC-----------------HHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CC-----------------HHHHHHH
Confidence            56788899999999999999999999999999999999999999999999776 54                 4567788


Q ss_pred             HHcCCCCcchhhhhhhccC-CCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         131 LSYGADPLLASYAVYFLSL-PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       131 ~~~g~~~~~~~~~~~~~~~-~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +++|++++..+      .. |.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+..++++.++..
T Consensus        64 l~~g~~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           64 LLHGAEPNCAD------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             HHHTCCSSCCB------TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHCCCCCCCcC------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999888      67 99999999999999999999999999999999999999999999988888887653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2e-26  Score=160.97  Aligned_cols=127  Identities=35%  Similarity=0.485  Sum_probs=107.6

Q ss_pred             CCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCC
Q psy5702          56 PKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA  135 (235)
Q Consensus        56 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~  135 (235)
                      .+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+                 +.+++++|+++|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG-----------------HLKVVELLLQHKA   67 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCC
Confidence            56788888888888888888888888888888888888888888877654                 4456677788888


Q ss_pred             CCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         136 DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       136 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..+++..+...
T Consensus        68 ~~~~~~------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           68 LVNTTG------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             CTTCCC------GGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             cccCcC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            888777      6789999999999999999999999999999999999999999999988888766544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3.9e-26  Score=159.39  Aligned_cols=127  Identities=30%  Similarity=0.366  Sum_probs=107.9

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      ....+.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            445677899999999999999999988 7888888899999999999999999999999999999999999999999877


Q ss_pred             HhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCC
Q psy5702         103 EKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG  173 (235)
Q Consensus       103 ~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  173 (235)
                      ..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|
T Consensus        89 ~~~-----------------~~~~v~~Ll~~g~~~~~~~------~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIG-----------------HLEIAEVLLKHGADVNAQD------KFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcC-----------------CHHHHHHHHHcCCCCcCcC------CCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            664                 4456777888898888777      78899999999999999999998876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.2e-25  Score=160.38  Aligned_cols=142  Identities=24%  Similarity=0.309  Sum_probs=127.8

Q ss_pred             chHHHHHHHhhh-hceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGAE-VRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +..+.++.++.. +.+.+.+|..|.||||+ +..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            456778888887 33888899999999999 999999999999998 889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..++                 .+++++|++. ++++..+      ..|.||||+|+..|+.
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~~-----------------~~~v~~Ll~~-~~~~~~~------~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           91 GADVNVPDGTGALPIHLAVQEGH-----------------TAVVSFLAAE-SDLHRRD------ARGLTPLELALQRGAQ  146 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTC-----------------HHHHHHHHTT-SCTTCCC------TTSCCHHHHHHHSCCH
T ss_pred             CCCCCCcCCCCCcHHHHHHHhCh-----------------HHHHHHHHhc-cCCCCcC------CCCCCHHHHHHHcCcH
Confidence            99999999999999999887654                 4566777888 8888877      7899999999999999


Q ss_pred             HHHHHHHHC
Q psy5702         164 EMVRLLLSY  172 (235)
Q Consensus       164 ~~v~~Ll~~  172 (235)
                      +++++|+++
T Consensus       147 ~~v~~Ll~~  155 (156)
T 1bd8_A          147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=2.3e-25  Score=152.74  Aligned_cols=120  Identities=33%  Similarity=0.388  Sum_probs=99.8

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5702          58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP  137 (235)
Q Consensus        58 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~  137 (235)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+                 +.+++++|+++|+++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~g~~~   66 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG-----------------QLEILEFLLLKGADI   66 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTT-----------------CHHHHHHHHTTTCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcC-----------------CHHHHHHHHHcCCCC
Confidence            456778888888888888888888888888888888888888877654                 445667778888888


Q ss_pred             cchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHH
Q psy5702         138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       138 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~  200 (235)
                      +..+      ..|+||||+|+..++.+++++|+++|++++.+|..|.||+|+|...+..++++
T Consensus        67 ~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll~  123 (123)
T 3aaa_C           67 NAPD------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ  123 (123)
T ss_dssp             TCCC------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHHC
T ss_pred             CcCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHhC
Confidence            8777      78899999999999999999999999999999999999999998887777663

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=7.1e-26  Score=158.18  Aligned_cols=132  Identities=37%  Similarity=0.526  Sum_probs=115.6

Q ss_pred             ceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy5702          18 RSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        18 ~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                      .|. .+|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            344 6899999999999999999999999998 88899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCC
Q psy5702          98 LHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA  174 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga  174 (235)
                      ||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..+..+++++|.+.+.
T Consensus        80 L~~A~~~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           80 LHDAAKNG-----------------HVDIVKLLLSYGASRNAVN------IFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHcC-----------------CHHHHHHHHHcCCCCCCCC------CCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99987765                 4566788899999999888      899999999999999998887776543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=2.7e-25  Score=155.05  Aligned_cols=125  Identities=31%  Similarity=0.342  Sum_probs=114.2

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCC
Q psy5702          57 KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD  136 (235)
Q Consensus        57 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~  136 (235)
                      ....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+                 +.+++++|+++|++
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~g~~   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG-----------------HLEIVEVLLKNGAD   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-----------------CHHHHHHHHHTTCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCC
Confidence            4467899999999999999999999999999999999999999988765                 45667888999999


Q ss_pred             CcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         137 PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       137 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      ++..+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+..++++.+..
T Consensus        73 ~~~~d------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           73 VNAVD------AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TTCCC------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99888      789999999999999999999999999999999999999999999999999988764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.5e-26  Score=167.93  Aligned_cols=153  Identities=12%  Similarity=0.024  Sum_probs=127.8

Q ss_pred             HHHHHHHhhhhceeEeec-CCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC------HH
Q psy5702           7 GDTVEDVGAEVRSWVINK-HHGETPLHRAARLGYI----DAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW------LD   75 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d-~~g~~~L~~A~~~~~~----~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~------~~   75 (235)
                      .+.+..+...+.  +.++ ..|+||||+|+..++.    +++++|++. |++++.+|..|.||||+|+..++      .+
T Consensus        19 ~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~   95 (186)
T 3t8k_A           19 YEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTE   95 (186)
T ss_dssp             HHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHH
Confidence            344555555443  3355 7899999999999975    589999998 99999999999999999999886      58


Q ss_pred             HHHHHHhcCCCCCCCCCCCC-cHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHH-cCCCCcchhhhhhhccCCCch
Q psy5702          76 IARLLLMYGADPSDSAIGGI-RPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLS-YGADPLLASYAVYFLSLPSRP  153 (235)
Q Consensus        76 ~v~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~t~  153 (235)
                      ++++|++.|++++.+|..|. ||||+|+..+..+.            +..+++++|++ +|++++..+      ..|.||
T Consensus        96 iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~------------~~~~iv~~Ll~~~gad~~~~d------~~G~Tp  157 (186)
T 3t8k_A           96 LCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN------------EMIPLYKLIFSQSGLQLLIKD------KWGLTA  157 (186)
T ss_dssp             HHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHH------------HHHHHHHHHHTSTTCCTTCCC------TTSCCH
T ss_pred             HHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChh------------hHHHHHHHHHHhcCCCCcccC------CCCCCH
Confidence            89999999999999999999 99999988554321            23467899999 999999999      899999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         154 LHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       154 L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                      ||+|+..++.+++++|.+...+++.++
T Consensus       158 L~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          158 LEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999998765555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.6e-24  Score=148.62  Aligned_cols=123  Identities=40%  Similarity=0.552  Sum_probs=113.2

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy5702          60 AGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLL  139 (235)
Q Consensus        60 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~  139 (235)
                      +|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+                 +.+++++|+++|++++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-----------------~~~~~~~Ll~~g~~~~~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-----------------HLEVVKLLLEAGADVNA   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT-----------------CHHHHHHHHHTTCCTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-----------------cHHHHHHHHHcCCCCcc
Confidence            4899999999999999999999999999999999999999987765                 45667888999999988


Q ss_pred             hhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         140 ASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       140 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .+      ..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++++...
T Consensus        64 ~~------~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           64 KD------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cC------CCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            87      7899999999999999999999999999999999999999999999999999887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=6.6e-25  Score=172.86  Aligned_cols=141  Identities=19%  Similarity=0.071  Sum_probs=114.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCC
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP------KDNAGYTPLHEAASH---GWLDIARLLLMYGADPSDSAIGGI   95 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~   95 (235)
                      ..+.++|+.|+..++.+.++.|++. +.+++.      .+..|.||||+|+..   ++.+++++|++.|++++.+|..|.
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            3345679999999999999999977 777776      588899999999987   889999999999999999999999


Q ss_pred             cHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702          96 RPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus        96 t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      ||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++|++
T Consensus       228 TpLh~A~~~g-----------------~~~~v~~Ll~~gad~~~~d------~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          228 TALHYAALYN-----------------QPDCLKLLLKGRALVGTVN------EAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHHHTT-----------------CHHHHHHHHHTTCCCSCCC------TTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcC-----------------CHHHHHHHHHcCCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9999977664                 4566777889999998888      7899999999999999999999998876


Q ss_pred             CCCccccCCChhhhccchhh
Q psy5702         176 PLLASYAGHTPLSITSDETT  195 (235)
Q Consensus       176 ~~~~~~~g~t~l~~a~~~~~  195 (235)
                            .|.||||+|+..+.
T Consensus       285 ------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          285 ------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             ------TTSSCCC-------
T ss_pred             ------CCCChhHHHHhcCC
Confidence                  47899999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=5.6e-25  Score=161.17  Aligned_cols=140  Identities=27%  Similarity=0.201  Sum_probs=123.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA-IGGIRPLHDAA  102 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~  102 (235)
                      +..|.||||+|+..|+.+++++|++  +.+++..|..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578899999999999999999998  77889999999999999999999999999999999999988 88999999987


Q ss_pred             HhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcccc
Q psy5702         103 EKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYA  182 (235)
Q Consensus       103 ~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  182 (235)
                      ..+                 +.+++++|+++|++++..+      ..|.||||+|++.++.                 ..
T Consensus       119 ~~~-----------------~~~~v~~Ll~~ga~~~~~d------~~g~tpl~~A~~~~~~-----------------~~  158 (183)
T 3deo_A          119 GYV-----------------RPEVVEALVELGADIEVED------ERGLTALELAREILKT-----------------TP  158 (183)
T ss_dssp             HTT-----------------CHHHHHHHHHHTCCTTCCC------TTSCCHHHHHHHHHHT-----------------CC
T ss_pred             hcC-----------------cHHHHHHHHHcCCCCcCCC------CCCCCHHHHHHHhccC-----------------cc
Confidence            765                 4566788899999999888      8999999999875332                 34


Q ss_pred             CCChhhhccchhhHHHHHHhhcc
Q psy5702         183 GHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       183 g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      +.+|+++|++.+..++++.+...
T Consensus       159 ~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          159 KGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHcCHHHHHHHHHHh
Confidence            78999999999999999887653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.5e-25  Score=158.08  Aligned_cols=128  Identities=27%  Similarity=0.374  Sum_probs=115.3

Q ss_pred             CCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcC
Q psy5702          55 APKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG  134 (235)
Q Consensus        55 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g  134 (235)
                      +..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+ .                 |+.+++++|+++|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-----------------~~~~~v~~Ll~~g   67 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-----------------GSARVAELLLLHG   67 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-----------------TCHHHHHHHHTTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-----------------CCHHHHHHHHHcC
Confidence            456788999999999999999999999999999999999999999863 3                 4667788899999


Q ss_pred             CCCcchhhhhhhccCCCc-hHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         135 ADPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       135 ~~~~~~~~~~~~~~~~~t-~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      ++++..+      ..|.| |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++++...
T Consensus        68 ~~~~~~d------~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           68 AEPNCAD------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             CCCCCCC------TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             CCCCCcC------CCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            9999888      78998 999999999999999999999999999999999999999999999999987763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=3.9e-25  Score=166.79  Aligned_cols=131  Identities=28%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHh
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY-GADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      .|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            344555555555555555555554 444555555555555555555555555555554 555555555555555554433


Q ss_pred             CChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCcc
Q psy5702         105 GCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLAS  180 (235)
Q Consensus       105 ~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  180 (235)
                      +                 +.+++++|+++|++++..+      ..|.||||+|+..++.++++.|++.|+.....+
T Consensus       151 ~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          151 G-----------------YADIVQLLLAKGARTDLRN------IEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             T-----------------CHHHHHHHHHHTCCSCCCC------TTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             C-----------------CHHHHHHHHHcCCCCcccc------CCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            2                 2233444455555554444      445555555555555555555555554444433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.1e-24  Score=166.84  Aligned_cols=139  Identities=27%  Similarity=0.210  Sum_probs=123.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHH
Q psy5702          25 HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA-IGGIRPLHDAAE  103 (235)
Q Consensus        25 ~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~~  103 (235)
                      ..|.||||+|++.|+.++++.|++  +.+++.+|..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            468899999999999999999998  67899999999999999999999999999999999999988 889999999877


Q ss_pred             hCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccC
Q psy5702         104 KGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAG  183 (235)
Q Consensus       104 ~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  183 (235)
                      .+                 +.+++++|+++|++++..+      ..|.||||+|+..+.                 ...+
T Consensus       121 ~g-----------------~~~~v~~Ll~~ga~~~~~d------~~g~t~l~~A~~~~~-----------------~~~~  160 (244)
T 3ui2_A          121 YV-----------------RPEVVEALVELGADIEVED------ERGLTALELAREILK-----------------TTPK  160 (244)
T ss_dssp             TT-----------------CHHHHHHHHHTTCCTTCCC------TTCCCHHHHHHHHHT-----------------TCCC
T ss_pred             cC-----------------CHHHHHHHHHCCCCCCCCC------CCCCcHHHHHHHHHh-----------------ccCC
Confidence            65                 4566788899999999888      899999999986322                 2468


Q ss_pred             CChhhhccchhhHHHHHHhhcc
Q psy5702         184 HTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       184 ~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .|||++|+..+..++++.+...
T Consensus       161 ~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          161 GNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHh
Confidence            8999999999999999888764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=5.5e-24  Score=145.80  Aligned_cols=117  Identities=28%  Similarity=0.327  Sum_probs=102.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAE  103 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  103 (235)
                      +..|.+|||+|+..|+.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            56788999999999999999999998 78899999999999999999999999999999999999999999999999887


Q ss_pred             hCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHH
Q psy5702         104 KGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus       104 ~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      .+                 +.+++++|+++|++++..+      ..|.||||+|...+..+
T Consensus        83 ~~-----------------~~~~v~~Ll~~ga~~~~~~------~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           83 EG-----------------HVSCVKLLLSKGADKTVKG------PDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHCCCHHHHH
T ss_pred             cC-----------------CHHHHHHHHHcCCCCCCcC------CCCCCHHHHhCCHHHHH
Confidence            65                 4566788899999999888      89999999995444333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4.8e-24  Score=160.84  Aligned_cols=129  Identities=25%  Similarity=0.265  Sum_probs=111.8

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHc-CCC
Q psy5702          58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY-GAD  136 (235)
Q Consensus        58 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~-g~~  136 (235)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++                 .+++++|++. |++
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----------------~~~v~~Ll~~~g~~  132 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH-----------------KDIVEMLFTQPNIE  132 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----------------HHHHHHHTTSTTCC
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC-----------------HHHHHHHHcCCCCC
Confidence            4568999999999999999999999999999999999999999887654                 4667778888 999


Q ss_pred             CcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCC
Q psy5702         137 PLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGH  209 (235)
Q Consensus       137 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~  209 (235)
                      ++..+      ..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..++++.++......
T Consensus       133 ~~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          133 LNQQN------KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCCCC------TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             ccccC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            99888      79999999999999999999999999999999999999999999999999999887665443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.2e-26  Score=187.61  Aligned_cols=49  Identities=8%  Similarity=-0.006  Sum_probs=21.3

Q ss_pred             cCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCCC
Q psy5702         182 AGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK  235 (235)
Q Consensus       182 ~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  235 (235)
                      .+.|||++|+..+..++++.++....     -.+..+.+.++.++..|+.++.+
T Consensus       318 ~~~~~L~~A~~~g~~e~v~lLl~~~~-----v~~~~~~~~~~~~~~~~~~~~~~  366 (376)
T 2aja_A          318 DANELLRLALRLGNQGACALLLSIPS-----VLALTKANNYYINETGGRLDLRA  366 (376)
T ss_dssp             CCCHHHHHHHHHTCTTHHHHHTTSHH-----HHHSCC-----------------
T ss_pred             CccHHHHHHHHcCcHHHHHHHHcChH-----HHHHHHHhccccccccccccHHH
Confidence            35577888888888888888876422     22344556677788888877653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=9.7e-26  Score=182.30  Aligned_cols=151  Identities=15%  Similarity=0.065  Sum_probs=114.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC---CCCCCCCCcHH
Q psy5702          24 KHHGETPLHRAARLGYIDAVAYCLEKFSHG--PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADP---SDSAIGGIRPL   98 (235)
Q Consensus        24 d~~g~~~L~~A~~~~~~~~v~~li~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l   98 (235)
                      +.++.||||+|++.|+.+++++|++.+...  .+..+..|.||||+|+..|+.+++++|++.|+++   +..+.. .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            344569999999999999999999873311  1234456888999999999999999999999763   222221 4555


Q ss_pred             HHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcc--hhhhhhhccCCCchHHHHH-hcCCHHHHHHHHHCCCC
Q psy5702          99 HDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLL--ASYAVYFLSLPSRPLHDAA-EKGCVEMVRLLLSYGAD  175 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~t~L~~A~-~~~~~~~v~~Ll~~ga~  175 (235)
                      |+                 |+..|+.+++++|+++|++++.  .+      ..|.||||+|+ ..|+.+++++|+++|+ 
T Consensus       168 h~-----------------Aa~~G~~eiv~~Ll~~ga~~~~~~~d------~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-  223 (376)
T 2aja_A          168 RL-----------------AAENGHLHVLNRLCELAPTEATAMIQ------AENYYAFRWAAVGRGHHNVINFLLDCPV-  223 (376)
T ss_dssp             HH-----------------HHHTTCHHHHHHHHHSCGGGHHHHHH------HHHHHHHHHHHSTTCCHHHHHHHTTSHH-
T ss_pred             HH-----------------HHHCCCHHHHHHHHHcCCccchhccC------CCCCCHHHHHHHHCCCHHHHHHHHhCCC-
Confidence            55                 5556677788889999998776  55      56889999999 9999999999999874 


Q ss_pred             CCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         176 PLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       176 ~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                            .|.||+++|+..+..++++++...
T Consensus       224 ------~~~taL~~Aa~~g~~evv~lL~~~  247 (376)
T 2aja_A          224 ------MLAYAEIHEFEYGEKYVNPFIARH  247 (376)
T ss_dssp             ------HHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             ------ccchHHHHHHHCCCHHHHHHHHhc
Confidence                  388999999998877777766554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.9e-22  Score=157.15  Aligned_cols=121  Identities=21%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy5702          30 PLHRAARLGYIDAVAYCLEKFSHG------PAPKDNAGYTPLHEAASH---GWLDIARLLLMYGADPSDSAIGGIRPLHD  100 (235)
Q Consensus        30 ~L~~A~~~~~~~~v~~li~~~~~~------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  100 (235)
                      +|+.|+..++.+.+..+++. +.+      ++..+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||+
T Consensus       133 ~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~  211 (278)
T 1dcq_A          133 SLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY  211 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             hhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence            45555555555555555544 333      222244455555555554   44555555555555555555555555555


Q ss_pred             HHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCC
Q psy5702         101 AAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA  174 (235)
Q Consensus       101 a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga  174 (235)
                      |+..|                 +.+++++|+++|++++..+      ..|.||||+|+..|+.+++++|+++|+
T Consensus       212 A~~~g-----------------~~~~v~~Ll~~gad~~~~d------~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          212 CCLTD-----------------NAECLKLLLRGKASIEIAN------ESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHcC-----------------CHHHHHHHHHcCCCCCCcc------CCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            44332                 2233444455555555444      445555555555555555555555444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=1.1e-22  Score=163.84  Aligned_cols=148  Identities=26%  Similarity=0.242  Sum_probs=114.1

Q ss_pred             eecCCCCcHHHHHHHc-CCHHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q psy5702          22 INKHHGETPLHRAARL-GYIDAVAYCLEKFSHGPAPKD--NAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPL   98 (235)
Q Consensus        22 ~~d~~g~~~L~~A~~~-~~~~~v~~li~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   98 (235)
                      +.+..+.++||.|+.. ++.++++.|++. +.+++..+  ..|.||||+|+..|+.+++++|++.|++++..|..|.|||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL  272 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            3445566899999999 999999999998 88898888  8899999999999999999999999999999999999999


Q ss_pred             HHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCC---CC
Q psy5702          99 HDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG---AD  175 (235)
Q Consensus        99 ~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g---a~  175 (235)
                      |+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+..++.+++++|++.+   ++
T Consensus       273 h~A~~~g-----------------~~~~v~~LL~~Gad~~~~d------~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~  329 (368)
T 3jue_A          273 HHATILG-----------------HTGLACLFLKRGADLGARD------SEGRDPLTIAMETANADIVTLLRLAKMREAE  329 (368)
T ss_dssp             HHHHHHT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHHC----
T ss_pred             HHHHHcC-----------------cHHHHHHHHHCcCCCCCcC------CCCCCHHHHHHHCCCHHHHHHHHHcCCCccc
Confidence            9987765                 4566788899999999888      78999999999999999999999865   44


Q ss_pred             CCCccccCCChhhhccch
Q psy5702         176 PLLASYAGHTPLSITSDE  193 (235)
Q Consensus       176 ~~~~~~~g~t~l~~a~~~  193 (235)
                      ....+..+.|+++++...
T Consensus       330 ~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          330 AAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             ------------------
T ss_pred             ccccCCCCCCHHHHHHHH
Confidence            445666788888877653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.8e-21  Score=151.55  Aligned_cols=172  Identities=18%  Similarity=0.093  Sum_probs=135.8

Q ss_pred             ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCC----CC--------------------------CCCCCCcHHHHHHhcC
Q psy5702          23 NKHHGETPLHRAARLGYIDAVAYCLEKFSHGP----AP--------------------------KDNAGYTPLHEAASHG   72 (235)
Q Consensus        23 ~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~----~~--------------------------~~~~g~t~L~~A~~~~   72 (235)
                      .|..+.+.++.+...|+..+.+++........    ..                          ......++|+.|+..+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            45667778888888888766555432211000    00                          0011245799999999


Q ss_pred             CHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhh
Q psy5702          73 WLDIARLLLMYGADP------SDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF  146 (235)
Q Consensus        73 ~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~  146 (235)
                      +.+.++.+++.|+++      +..+..|.||||+|+..++.              ++.+++++|+++|++++..+     
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~--------------~~~~~v~~Ll~~ga~in~~d-----  202 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR--------------TSLHIVDFLVQNSGNLDKQT-----  202 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT--------------TTHHHHHHHHHHCSCTTCCC-----
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhccc--------------chHHHHHHHHHCCCCccccC-----
Confidence            999999999999994      44578899999998877321              45677888999999999888     


Q ss_pred             ccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcc
Q psy5702         147 LSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKW  214 (235)
Q Consensus       147 ~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~  214 (235)
                       ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++.....+....+
T Consensus       203 -~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  269 (278)
T 1dcq_A          203 -GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV  269 (278)
T ss_dssp             -TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCSSC
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcce
Confidence             7999999999999999999999999999999999999999999999999999888877665555443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=2.1e-22  Score=147.45  Aligned_cols=114  Identities=27%  Similarity=0.152  Sum_probs=103.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5702          58 DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP  137 (235)
Q Consensus        58 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~  137 (235)
                      +..|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..+                 +.+++++|+++|+++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~-----------------~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLG-----------------SDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHT-----------------CHHHHHHHHHTTCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcCCCC
Confidence            3578999999999999999999999 9999999999999999988765                 456678889999998


Q ss_pred             cchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       138 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                      +..+.     ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus       103 ~~~~~-----~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          103 DHRDM-----RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             TCCCS-----SSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             CcCCC-----CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            87652     57999999999999999999999999999999999999999998753

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=4.8e-22  Score=156.55  Aligned_cols=143  Identities=17%  Similarity=0.038  Sum_probs=118.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcC
Q psy5702          61 GYTPLHEAASHGWLDIARLLLMYGADPSD------SAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG  134 (235)
Q Consensus        61 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g  134 (235)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..+.              .++.+++++|+++|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~--------------~~~~~iv~~Ll~~g  216 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN--------------QASLPLVDFIIQNG  216 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCC--------------TTTHHHHHHHHHHS
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcc--------------cCcHHHHHHHHhcC
Confidence            45679999999999999999999999988      68899999999887632              14667889999999


Q ss_pred             CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcc
Q psy5702         135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKW  214 (235)
Q Consensus       135 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~  214 (235)
                      ++++..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++.....      
T Consensus       217 advn~~d------~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------  284 (301)
T 2b0o_E          217 GHLDAKA------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------  284 (301)
T ss_dssp             SCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred             CCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence            9999888      7999999999999999999999999999999999999999999998888888887765332      


Q ss_pred             cccCCCcccccccccCC
Q psy5702         215 DFAGPASCFDKQMVGYE  231 (235)
Q Consensus       215 ~~~~~~~~~~~~~~g~~  231 (235)
                        .+.+++..+...||.
T Consensus       285 --~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 --TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --TTSSCCC--------
T ss_pred             --CCCChhHHHHhcCCc
Confidence              456777777777775

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.8e-21  Score=126.56  Aligned_cols=75  Identities=47%  Similarity=0.638  Sum_probs=36.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      |+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            44455555555555555544444 4444444444555555555554444444444444444444444444444433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.6e-21  Score=125.17  Aligned_cols=81  Identities=36%  Similarity=0.436  Sum_probs=67.5

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +..+.++.++..+.+++.+|..|.||||+|+..++.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        13 ~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            345778888888888888888888888888888888888888887 7778888888888888888888888888888887


Q ss_pred             CC
Q psy5702          85 AD   86 (235)
Q Consensus        85 ~~   86 (235)
                      ++
T Consensus        92 a~   93 (93)
T 1n0q_A           92 AY   93 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=3.8e-22  Score=134.93  Aligned_cols=109  Identities=38%  Similarity=0.446  Sum_probs=70.2

Q ss_pred             CCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCC
Q psy5702          56 PKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA  135 (235)
Q Consensus        56 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~  135 (235)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+                 +.+++++|+++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~-----------------~~~~~~~Ll~~g~   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG-----------------HAEIVKLLLAKGA   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT-----------------CHHHHHHHTTTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-----------------cHHHHHHHHHcCC
Confidence            34566666666666666666666666666666666666666666655443                 3344555666666


Q ss_pred             CCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChh
Q psy5702         136 DPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL  187 (235)
Q Consensus       136 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  187 (235)
                      +++..+      ..|.||||+|+..++.+++++|+++|++++.++..|.||-
T Consensus        67 ~~~~~d------~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           67 DVNARS------KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CTTCCC------TTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCcccC------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            666555      5677777777777777777777777777777777776663

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.7e-21  Score=148.97  Aligned_cols=130  Identities=21%  Similarity=0.168  Sum_probs=116.2

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      .+..+.++.++. +.+++.+|..|+||||+|+..|+.+++++|++. +.+++.++ ..|.||||+|+..|+.+++++|++
T Consensus        55 ~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  132 (244)
T 3ui2_A           55 KADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  132 (244)
T ss_dssp             TTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            345678899998 999999999999999999999999999999998 88898888 789999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCC
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC  162 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~  162 (235)
                      .|++++.++..|.||||+|+..++.                                        ..+.|||++|+..|+
T Consensus       133 ~ga~~~~~d~~g~t~l~~A~~~~~~----------------------------------------~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          133 LGADIEVEDERGLTALELAREILKT----------------------------------------TPKGNPMQFGRRIGL  172 (244)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHHTT----------------------------------------CCCSSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcHHHHHHHHHhc----------------------------------------cCCCCHHHHHHHcCh
Confidence            9999999999999999998753110                                        357799999999999


Q ss_pred             HHHHHHHHHCCCC
Q psy5702         163 VEMVRLLLSYGAD  175 (235)
Q Consensus       163 ~~~v~~Ll~~ga~  175 (235)
                      .+++++|++++.+
T Consensus       173 ~~iv~~L~~~~~~  185 (244)
T 3ui2_A          173 EKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHEE
T ss_pred             HHHHHHHHHhccc
Confidence            9999999987544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=1.4e-21  Score=132.13  Aligned_cols=110  Identities=36%  Similarity=0.448  Sum_probs=97.4

Q ss_pred             eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy5702          20 WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLH   99 (235)
Q Consensus        20 ~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   99 (235)
                      ..++|..|+||||+|+..++.+++++|++. +.+++..|..|.||||+|+..++.+++++|++.|++++.++..|.||||
T Consensus         2 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             --CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            356899999999999999999999999998 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCch
Q psy5702         100 DAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRP  153 (235)
Q Consensus       100 ~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~  153 (235)
                      +|+..+                 +.+++++|+++|++++..+      ..+.+|
T Consensus        81 ~A~~~~-----------------~~~~~~~Ll~~ga~~n~~~------~~~~~~  111 (115)
T 2l6b_A           81 LAKKNG-----------------HHEIVKLLDAKGADVNARS------WGSSHH  111 (115)
T ss_dssp             HHHTTT-----------------CHHHHHHHHTTSSSHHHHS------CCCC--
T ss_pred             HHHHCC-----------------CHHHHHHHHHcCCCCCcCC------cccccc
Confidence            977664                 5567788899999998887      666665

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3.7e-21  Score=155.02  Aligned_cols=127  Identities=24%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             CCCCCCcHHHHHHhc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHc
Q psy5702          57 KDNAGYTPLHEAASH-GWLDIARLLLMYGADPSDSA--IGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSY  133 (235)
Q Consensus        57 ~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~  133 (235)
                      .+..+.++||.|+.. ++.++++.|++.|++++..+  ..|.||||+|+..+                 +.+++++|+++
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g-----------------~~~iv~~LL~~  257 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN-----------------SLLACEFLLQN  257 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTT-----------------CHHHHHHHHHT
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCC-----------------CHHHHHHHHHc
Confidence            334567899999999 99999999999999999988  88999999987764                 55667888999


Q ss_pred             CCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         134 GADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       134 g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      |++++..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.+....
T Consensus       258 Gadvn~~d------~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          258 GANVNQAD------SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             TCCTTCCC------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCCC------CCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999888      79999999999999999999999999999999999999999999998888888876554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.84  E-value=1.5e-20  Score=157.84  Aligned_cols=127  Identities=18%  Similarity=0.082  Sum_probs=113.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcC
Q psy5702          61 GYTPLHEAASHGWLDIARLLLMYGADPSDS------AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG  134 (235)
Q Consensus        61 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g  134 (235)
                      ..+.||.|+..|+.+.++.|++.|++++..      +..|.||||+|+...              ..|+.+++++|+++|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a--------------~~g~~~~v~~Ll~~g  197 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA--------------NQASLPLVDFIIQNG  197 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTC--------------CTTTHHHHHHHHHHS
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhc--------------ccccHHHHHHHHHcC
Confidence            446799999999999999999999999887      889999999987621              235678889999999


Q ss_pred             CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcccc
Q psy5702         135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVR  207 (235)
Q Consensus       135 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~  207 (235)
                      ++++..+      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..++++.++....
T Consensus       198 a~vn~~d------~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          198 GHLDAKA------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             CCTTCCC------SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             CCCCccC------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999988      899999999999999999999999999999999999999999999888888887766543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=4.3e-19  Score=118.93  Aligned_cols=92  Identities=30%  Similarity=0.361  Sum_probs=84.1

Q ss_pred             EeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q psy5702          21 VINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHD  100 (235)
Q Consensus        21 ~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  100 (235)
                      .-.|.+|.++||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34677899999999999999999999998 88899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChhHHHHh
Q psy5702         101 AAEKGCVEMVRLL  113 (235)
Q Consensus       101 a~~~~~~~~~~~l  113 (235)
                      |+..++.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999888765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=9.8e-18  Score=112.26  Aligned_cols=92  Identities=30%  Similarity=0.389  Sum_probs=70.7

Q ss_pred             CCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcC
Q psy5702          55 APKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYG  134 (235)
Q Consensus        55 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g  134 (235)
                      ...+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+                 +.+++++|+++|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~-----------------~~~~v~~Ll~~g   80 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG-----------------HLEVVKLLLEAG   80 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-----------------CHHHHHHHHHTT
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC-----------------CHHHHHHHHHcC
Confidence            346678888888888888888888888888888888888888888866654                 445567778888


Q ss_pred             CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHH
Q psy5702         135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL  169 (235)
Q Consensus       135 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  169 (235)
                      ++++..+      ..|.||||+|+..++.+++++|
T Consensus        81 a~~~~~d------~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           81 ADVXAQD------KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTCCC------TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCccccc------cCCCcHHHHHHHcCCHHHHHHh
Confidence            8877777      6788888888888888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 5e-27
 Identities = 60/212 (28%), Positives = 81/212 (38%), Gaps = 60/212 (28%)

Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
           TPLH A+ +G++  V   L+    G +P   +    TPLH AA  G  ++A+ LL   A 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ---RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------------- 113
            +  A     PLH AA  G   MV+LL                                 
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDA 157
                           PLH AA+ G V +  LLL   A P  A            PLH A
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT------PLHVA 172

Query: 158 AEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
                +++V+LLL  G  P   ++ G+TPL I
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 6e-22
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 26/185 (14%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                  G TPLH AA+ G+ + VA  L K ++G    + +G TPLH  A  G + +A +
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADV 282

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGC 123
           L+ +G     +   G  PLH A+  G +++V+ L                PLH AA++G 
Sbjct: 283 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 342

Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKG---CVEMVRLLLSYGADPLLAS 180
            ++V LLL  GA P   S         + PL  A   G     ++++++    +  L++ 
Sbjct: 343 TDIVTLLLKNGASPNEVSSD------GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

Query: 181 YAGHT 185
               +
Sbjct: 397 KHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 1e-17
 Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 23/207 (11%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
             G TPLH AA+ G +      LE+ +H P      G TPLH A  H  LDI +LLL  G
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
             P   A  G  PLH AA++  VE+ R L                PLH AA++G  EMV 
Sbjct: 189 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS 188
           LLLS  A+  L + +         PLH  A++G V +  +L+ +G      +  G+TPL 
Sbjct: 249 LLLSKQANGNLGNKSGL------TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 302

Query: 189 ITSDETTRKLLQYHLADVRGHEAPKWD 215
           + S     KL+++ L       A    
Sbjct: 303 VASHYGNIKLVKFLLQHQADVNAKTKL 329

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 6e-16
 Identities = 70/241 (29%), Positives = 99/241 (41%), Gaps = 57/241 (23%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSH-------------------------------- 52
              +TPLH AAR+G+ + V   LE  ++                                
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 53  GPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRL 112
             A     G+TPLH AA +G + +A LLL   A P+ +   G+ PLH A     +++V+L
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 113 L----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHD 156
           L                PLH AA++  VE+ R LL YG      S           PLH 
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV------TPLHL 237

Query: 157 AAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDE---TTRKLLQYHLADVRGHEAPK 213
           AA++G  EMV LLLS  A+  L + +G TPL + + E       +L  H   V       
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 214 W 214
           +
Sbjct: 298 Y 298

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 63/214 (29%), Positives = 87/214 (40%), Gaps = 56/214 (26%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
            +G TPLH A     +D V   L +    P      GYTPLH AA    +++AR LL YG
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVR 128
              +  ++ G+ PLH AA++G  EMV LL                PLH  A++G V +  
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 281

Query: 129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV---------------------- 166
           +L+ +G      +   Y       PLH A+  G +++V                      
Sbjct: 282 VLIKHGVMVDATTRMGY------TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 335

Query: 167 -----------RLLLSYGADPLLASYAGHTPLSI 189
                       LLL  GA P   S  G TPL+I
Sbjct: 336 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 4e-15
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 14  GAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGW 73
           G  V +       G TPLH A+  G I  V + L+  +   A K   GY+PLH+AA  G 
Sbjct: 287 GVMVDAT---TRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGH 342

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
            DI  LLL  GA P++ +  G  PL  A   G + +  +L
Sbjct: 343 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 10  VEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHE 67
           V+ +             G +PLH+AA+ G+ D V   L+   +G +P    + G TPL  
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK---NGASPNEVSSDGTTPLAI 369

Query: 68  AASHGWLDIARLLLMYGADPSDSAI 92
           A   G++ +  +L +   + S   +
Sbjct: 370 AKRLGYISVTDVLKVVTDETSFVLV 394

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 87.6 bits (216), Expect = 5e-21
 Identities = 30/219 (13%), Positives = 53/219 (24%), Gaps = 49/219 (22%)

Query: 27  GETPLHRAARLGYIDAVAYCLEK-FSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA 85
                  AA  G++  +    E   +   A      Y     AA +G L +   L     
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 86  DPSDSAI---GGIRPLHDAAEKGCVEMVRLL---------PLHDAAEKGCVEMVRLLLSY 133
             + + I           A  +G   ++  L               E G   +   +  +
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 134 GADPLLASYAVYFLS-----------------LPSRPLHDAAEKGCVEMVRLLLSYGADP 176
                    A    +                    R L    ++  ++ +R LLS     
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 177 LLAS-----YAGHTPLSITSDETTRKLLQYHLADVRGHE 210
            LA         +  L               LA   G++
Sbjct: 306 ALAPTATIPGDANELL--------------RLALRLGNQ 330

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.2 bits (202), Expect = 4e-19
 Identities = 26/218 (11%), Positives = 46/218 (21%), Gaps = 45/218 (20%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLM 82
              E     AA  G   A+       +            Y     AA +G L +   L  
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 83  YGADP--SDSAIGGIRPLHDAAEKGCVEMVRLL-------------------PLHDAAEK 121
                  +            AAE G + ++  L                       A  +
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADP----- 176
           G   ++  LL                   +       E G   +   +  +         
Sbjct: 208 GHHNVINFLLDCPVM-------------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD 254

Query: 177 --LLASYAGHTPLSITSDETTRKLLQY--HLADVRGHE 210
              L++  G   L   S+      +       +     
Sbjct: 255 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 292

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (200), Expect = 1e-18
 Identities = 23/172 (13%), Positives = 47/172 (27%), Gaps = 23/172 (13%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH 71
           ++     + +I   +       A   G+ + + + L+                      +
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--------PVMLAYAEIHEFEY 233

Query: 72  GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR----------LLPLHDAAEK 121
           G   +   +  +     +           +   G  ++V           L  L    ++
Sbjct: 234 GEKYVNPFIARHVNRLKE----MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 289

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
             ++ +R LLS      LA  A       +  L  A   G      LLLS  
Sbjct: 290 VLLDDIRFLLSIPGIKALAPTATI-PGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.7 bits (172), Expect = 6e-15
 Identities = 25/206 (12%), Positives = 55/206 (26%), Gaps = 20/206 (9%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL 81
           I  +  +  L     + + +   + +                 +    +     + +LL 
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 82  MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC---VEMVRLLLSYGADPL 138
           +Y A  + +A       H    K  V          AA  GC   ++ + LLL+      
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEV------ICFVAAITGCSSALDTLCLLLTSDEIVK 120

Query: 139 LASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA--SYAGHTPLSITS---DE 193
           +     Y      +    AAE G + ++  L       ++A      +    + +     
Sbjct: 121 VIQAENY------QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 174

Query: 194 TTRKLLQYHLADVRGHEAPKWDFAGP 219
                L               ++   
Sbjct: 175 HVLNRLCELAPTEATAMIQAENYYAF 200

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 3e-18
 Identities = 33/139 (23%), Positives = 48/139 (34%), Gaps = 21/139 (15%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAG----YTPLHEAASHGWLD 75
               +  G T L  AA  G+++ +   L++        DN G       L  +       
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 76  IARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDA 118
           I  LLL +GAD +     G  PL  A EK  + +V+ L                  L  A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 119 AEKGCVEMVRLLLSYGADP 137
            E    ++  LL   GA  
Sbjct: 261 VELKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 2e-16
 Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
               L +A +   +D V   LE  ++    ++  G+TPLH A      DI  LLL +GAD
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLL 130
           P      G  P   AA  G V++++L                    +AA  G V+ ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 131 LSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVEMVRLLLS-YGADPLLASYAGH 184
              GA+  L            +     L DAAEKG VE++++LL   GAD       G 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 4e-14
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 35/202 (17%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFS---------HGPAPKDNAGYTPLHEAAS 70
                 +G T    AA  G + A+ +  ++ +                  G T L +AA 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 71  HGWLDIARLLL-MYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
            G +++ ++LL   GAD +     G   L  A        V               +  L
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE-------------AITHL 204

Query: 130 LLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLS 188
           LL +GAD  +             PL  A EK  + +V+ LL     +       G T L 
Sbjct: 205 LLDHGADVNVRGERGKT------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 189 ITS----DETTRKLLQYHLADV 206
           +       +    L +   A  
Sbjct: 259 LAVELKLKKIAELLCK-RGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADP-LLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
            L  A +   V++V+ LL  GA+        G TPL      +   +++  L        
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 212 PKWDF 216
            K + 
Sbjct: 68  RKKNG 72

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 23/144 (15%)

Query: 90  SAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLS 132
           +A+     L  A +   V++V+ L                 PLH+A +    ++V LLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 133 YGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSD 192
           +G      +  V      + P   AA  G V++++L LS GAD     + G T     + 
Sbjct: 61  HG------ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114

Query: 193 ETTRKLLQYHLADVRGHEAPKWDF 216
               K L++           +   
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTK 138

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 4e-16
 Identities = 51/216 (23%), Positives = 75/216 (34%), Gaps = 46/216 (21%)

Query: 31  LHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           +   A  G ++ +   +          D    T LH A S G  +I   LL  G   +D 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 91  AIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG 134
              G  PLH AA  G  E+V+ L                PLH AA K   E+  +LL  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 135 ADPLLAS--------------YAVYFLSLPSR-------------PLHDAAEKGCVEMVR 167
           A+P                         L                PLH A ++  VE  +
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 168 LLLSYGADPLLASYAGHTPLSITS---DETTRKLLQ 200
           LL+S GA   + +    TPL +         +++++
Sbjct: 187 LLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 222

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.1 bits (175), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 34/89 (38%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           + G T LH AA++  +  V Y + +       +D  G TP+  AA  G +++   L+  G
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           A               A       +V + 
Sbjct: 245 ASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
           P+  AA++G +E+V  L+  GA         +           A       +V +    
Sbjct: 224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDH------TARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 28  ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY---- 83
           E+P+          A+   + +             T LH  AS+   + +  L+++    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 84  ----GADPSDSAIGGIRPLHDAAEKGCVEM 109
               GAD +        PL  A       +
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRL 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSI 189
           P+  AA++G +E+V  L+  GA         HT   +
Sbjct: 224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 21  VINKHHGETPLHRAARLGYIDAVAYCLEKF-----SHG--PAPKDNAGYTPLHEAASHGW 73
           +I+  H  T LH  A     +     +        + G      D    TPL  A     
Sbjct: 27  IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 86

Query: 74  LDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLH 116
             +   L+  GADP+         LH AA      M+  +   
Sbjct: 87  RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS 129

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 16/83 (19%)

Query: 113 LPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY 172
           + LH  A  G   +   +     + +   +           LH  A     E    L+ +
Sbjct: 4   IKLHTEA-AGSYAITEPITRESVNIIDPRHN-------RTVLHWIASNSSAEKSEDLIVH 55

Query: 173 --------GADPLLASYAGHTPL 187
                   GAD        +TPL
Sbjct: 56  EAKECIAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 19/81 (23%)

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKG 122
             LH  A+     I   +     +  D                         LH  A   
Sbjct: 4   IKLHTEAAGS-YAITEPITRESVNIIDPRHN------------------RTVLHWIASNS 44

Query: 123 CVEMVRLLLSYGADPLLASYA 143
             E    L+ + A   +A+ A
Sbjct: 45  SAEKSEDLIVHEAKECIAAGA 65

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.5 bits (166), Expect = 2e-14
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 26  HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWL-------DIAR 78
           HG TPLH    +  ++ V + ++  S+     DN G + L +A              +  
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 79  LLLMYGADPSDS---------AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRL 129
            L                      G+     AA+     ++  +              + 
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 130 LLSYGADPLLASYAVYFLSLPSR--------------PLHDAAEKGCVEMVRLLLSYGAD 175
                 +       +  L L                  L+ AA  G + +V  LL YGAD
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 176 PLLASYAGHTPL 187
           P +A+ +G  P+
Sbjct: 285 PFIANKSGLRPV 296

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 23  NKHHGETPLHRAARLGYIDAVAYCLEKF--SHGPAPKDNAGYTPLHEAASHGWLDIARLL 80
             +  E+  +          +     K+  ++    +D+ G T L+ AA  G + I   L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 81  LMYGADPSDSAIGGIRPLHDAA 102
           L YGADP  +   G+RP+   A
Sbjct: 279 LDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 55  APKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLP 114
            P D  G TPLH   S   L++ + L+ +G++       G   L  A +           
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA 174
                   C+ +   +       ++ +  +            AA+     ++  ++    
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMT-------GCSAAAKYYLDILMGWIVKKQN 213

Query: 175 DPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
            P+ +            +   +  +  +L        
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 7e-14
 Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 11/162 (6%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARLLLMYG 84
           G+T LH A    +   + + L   +       +++ G T LH AA  G       L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAV 144
           A    +  GG   LH A          +L     +         L  S    P  +    
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 145 YFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTP 186
                      D+      E       +       +Y GHTP
Sbjct: 129 ---------AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 2e-12
 Identities = 37/222 (16%), Positives = 51/222 (22%), Gaps = 36/222 (16%)

Query: 12  DVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASH 71
              A      +    G+T LH AA LG    V       +     +        H A   
Sbjct: 30  GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL-HLACRV 88

Query: 72  GWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLL 131
                A +LL                    ++    +        D+      E      
Sbjct: 89  RAHTCACVLLQPRPSHPRD---ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145

Query: 132 SYGADP----------------------------LLASYAVYFLSLPSRPLHDAAEKGCV 163
            +                                  A       +    PLH A E    
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 164 EMVRLLLSYGADPLLASYAGHTPLSITS----DETTRKLLQY 201
            ++ LLL  GADP    Y G TPL            R L  +
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 11  EDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAAS 70
           ED   ++ +     + G TPLH A      + V    +  +    P+   G TPLH A  
Sbjct: 145 EDWRLQLEAE---NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 71  HGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
                +  LLL  GADP+    GG  PL  A  +    + RLL  H A E
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 3e-09
 Identities = 41/186 (22%), Positives = 58/186 (31%), Gaps = 36/186 (19%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP-------------KDNAGYTPLH 66
            ++ +  G T LH A R+         L+     P                D +      
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 67  EAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL------------- 113
           ++  +   +       +          G  PLH A      EMVRLL             
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT 190

Query: 114 ----PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL 169
               PLH A E     ++ LLL  GADP    Y          PL  A  +    + RLL
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR------TPLGSALLRPNPILARLL 244

Query: 170 LSYGAD 175
            ++GA 
Sbjct: 245 RAHGAP 250

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 3e-13
 Identities = 57/225 (25%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDIARLLLMY 83
           G+TPLH A   G + AV   +  F  G       +N   TPLH A       + RLL+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRL--------------------LPLHDAAEKGC 123
           GA P      G    H A E      +R                       LH A    C
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 124 VEMVRLLLSYGADPLLASYAVYFLSLP----------------------------SRPLH 155
            E V+LLL  GAD            L                             S  LH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 156 DAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ 200
            A+ +G + +VR L+  GAD  L +    TPL +        +L+
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
             ++   G +PL  A       ++   L +       +  +G + LH A+  G L + R 
Sbjct: 137 DAVDIKSGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRT 195

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR 111
           L+  GAD S        PL  A  +  ++++R
Sbjct: 196 LVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                + G T LH A      + V   LE+ +   A    +G +PL  A  +  L + +L
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLL 139
           LL +GA+ +     G   LH A+ +G +                  +VR L+  GAD  L
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLP-----------------LVRTLVRSGADSSL 205

Query: 140 ASYAVYFLSLPSRPLHDAAEKGCVEMVR 167
            +           PL  A  +  ++++R
Sbjct: 206 KNCHND------TPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
            LH AA KG  E+++LL+    D  +  Y  +       PLH AA  G  E  R+L+   
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT------PLHAAAHWGKEEACRILVENL 255

Query: 174 ADPLLASYAGHTPLSITSDETTRKLLQ 200
            D    +  G T   +  ++    L +
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 9e-10
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 32  HRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA 91
            +      +      L            +G T LH AA+ G+ ++ +LL+    D +   
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229

Query: 92  IGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGA 135
             G  PLH AA  G  E  R+L                    A E    +++  L     
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 42/226 (18%), Positives = 68/226 (30%), Gaps = 47/226 (20%)

Query: 24  KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL-- 79
           K         A   G  + V   LE    G      +  G T LH+A     +D+ +   
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE---RGADINYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 80  -------------------------------LLMYGADPSDSAIGGIRPLHDAAEKGCVE 108
                                          L+  GA        G  PL  A E+   E
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 109 MVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----PLHDAAEKGCVE 164
           +++        +          +         +         ++     LH AA KG  E
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 165 MVRLLLSYGADPLLASYAGHTPLSITSD----ETTRKLLQYHLADV 206
           +++LL+    D  +  Y G TPL   +     E  R L++ +L D+
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDM 258

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 2/115 (1%)

Query: 115 LHDAAEKGCVEMVRLLLSYGA-DPLLASYAVYFLSLPSR-PLHDAAEKGCVEMVRLLLSY 172
           + DA +K   ++ R + S    +P +       +          A   G  E V  LL  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 173 GADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQM 227
           GAD   A+  G T L     +    ++++ + +      P  +   P        
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 22  INKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAP--KDNAGYTPLHEAASHGWLDIARL 79
           I  + G TPLH AA  G  +A    +E   +       +  G T    A      DI   
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVE---NLCDMEAVNKVGQTAFDVADE----DILGY 279

Query: 80  LL 81
           L 
Sbjct: 280 LE 281

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 3e-10
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           + G+T LH AA +   +AV             +D+   TPL  AA  G  + ++ LL   
Sbjct: 121 NSGKTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 85  ADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           A+   +      P   A+E+   ++VRLL
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.2 bits (113), Expect = 1e-07
 Identities = 44/194 (22%), Positives = 61/194 (31%), Gaps = 55/194 (28%)

Query: 25  HHGETPLHRAARLGYIDAVAY---------------------------------CLEKFS 51
             GET LH AAR    DA                                     L   +
Sbjct: 21  KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80

Query: 52  HGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR 111
                + + G TPL  AA      +   L+   AD + +   G   LH AA     E V 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 112 LL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLH 155
           +L                PL  AA +G  E  + LL   A+  +  +          P  
Sbjct: 141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDR------LPRD 194

Query: 156 DAAEKGCVEMVRLL 169
            A+E+   ++VRLL
Sbjct: 195 VASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 8e-04
 Identities = 36/191 (18%), Positives = 52/191 (27%), Gaps = 44/191 (23%)

Query: 43  VAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA 102
           ++  L + +   A  D  G T LH AA     D A+ LL  GAD +     G  PLH A 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 103 EKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---------- 152
               + + ++L  + A                A  L     V  L               
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 153 -PLHDAAEKGCVEM---------------------------------VRLLLSYGADPLL 178
             LH AA     E                                   + LL   A+  +
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 179 ASYAGHTPLSI 189
             +    P  +
Sbjct: 185 TDHMDRLPRDV 195

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 5e-10
 Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 33/207 (15%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAP---KDNAGYTPLHEAASHGWLDIARLLLMY 83
           G++ LH A            + +     A    ++N   TPLH A      +IA  LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMV----------------------RLLPLHDAAEK 121
           G DP      G  PLH A E+GC+  V                          LH A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY 181
           G + +V LL+S GAD                 LH A +    ++V LLL  GAD    +Y
Sbjct: 122 GYLGIVELLVSLGAD-----VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 182 AGHTPLSITS---DETTRKLLQYHLAD 205
            G++P  +T        ++ L     +
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 5e-09
 Identities = 24/94 (25%), Positives = 36/94 (38%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                ++G T LH A+  GY+  V   +   +   A +   G T LH A      D+  L
Sbjct: 104 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 163

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
           LL  GAD +     G  P      +    + + L
Sbjct: 164 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 1e-08
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                 +G T LH A  L   D V+  L+  +         GY+P           I + 
Sbjct: 138 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQ 196

Query: 80  LLMYGADP 87
           L     + 
Sbjct: 197 LGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-06
 Identities = 31/175 (17%), Positives = 48/175 (27%), Gaps = 28/175 (16%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAAS-----HGWLDIARL 79
           +  +TPLH A      +     L                             G L  +  
Sbjct: 37  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 96

Query: 80  LLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKG 122
                +    +   G   LH A+  G + +V LL                  LH A +  
Sbjct: 97  TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 156

Query: 123 CVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPL 177
             ++V LLL  GAD    +Y  Y       P      +    + + L     + L
Sbjct: 157 NPDLVSLLLKCGADVNRVTYQGY------SPYQLTWGRPSTRIQQQLGQLTLENL 205

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 9e-10
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
             I     + PLHRAA +G +  +             +D  G+TPL  A + G  D A L
Sbjct: 131 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 80  LLM-YGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGAD 136
           L+  YGA+       G +    A  +                    ++ +  L+   D
Sbjct: 191 LVEKYGAEYDLVDNKGAKAEDVALNE--------------------QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 4e-08
 Identities = 16/56 (28%), Positives = 19/56 (33%)

Query: 29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG 84
           PLH+A        V   L         KD  G  PLH + S    +I   LL   
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 26/202 (12%)

Query: 25  HHGETPLHRAARLGYIDAVAYCLEK----FSHGPAPKDNAGYTPLHEAASHGWLDIARLL 80
             G  PLH +      +  ++ L K                   +  +  +  +  +   
Sbjct: 32  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 91

Query: 81  LMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCV 124
                D +     G+  LH A  K   E+ + L                PLH AA  G +
Sbjct: 92  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 151

Query: 125 EMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAG 183
           +++ LL   G   +       +      PL  A  +G  +   LL+  YGA+  L    G
Sbjct: 152 KLIELLCGLGKSAVNWQDKQGW-----TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 184 HTPLSITSDETTRKLLQYHLAD 205
                +  +E  +K    ++ D
Sbjct: 207 AKAEDVALNEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 63  TPLHEAASHGWLDIARLLL-MYGADPSDSAIGGIRPLHDAAEKGCVEM 109
            PLH+A         + LL    +        G  PLH +      E+
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 15/65 (23%)

Query: 153 PLHDAAEKGCVEMVRLLL-SYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEA 211
           PLH A  +     V+ LL S  +  L     G  PL              H +       
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL--------------HWSVSFQAHE 48

Query: 212 PKWDF 216
                
Sbjct: 49  ITSFL 53

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
           PLH A  +     V+ LL      LL       +     PLH +      E+   LLS  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-----PLHWSVSFQAHEITSFLLSKM 57

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 22/134 (16%), Positives = 29/134 (21%), Gaps = 24/134 (17%)

Query: 29  TPLHRAARLGYIDAVAYCLEK-----FSHGPAPKDNAGYTPLHEAA---SHGWLDIARLL 80
             L  A +   I  +                A       T LH A        L I   L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 81  LMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCV 124
           +    +       G   LH        E ++LL                PL  A      
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 125 EMVRLLLSYGADPL 138
               LL    +   
Sbjct: 128 HCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 19/150 (12%), Positives = 31/150 (20%), Gaps = 41/150 (27%)

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHD 117
             A    L EA     +         G D ++       PL +  E           LH 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----PLANGHEPDET------ALHL 51

Query: 118 AA---EKGCVEMVRLLLSYGADPLLASYAVYFLSLPSR---------------------- 152
           A    ++  + +V  L+    +    +                                 
Sbjct: 52  AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 111

Query: 153 -----PLHDAAEKGCVEMVRLLLSYGADPL 177
                PL  A          LL    +   
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 9e-05
 Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 26  HGETPLHRAARLGYIDA--VAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY 83
             ET LH A R     +  +   L + S     +   G T LH        +  +LLL  
Sbjct: 44  PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 103

Query: 84  GADPSDSAIGGIRPLHDAAEKGCVEMVRLL 113
            A    +   G  PL  A          LL
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDS 90
           + +G TPL  A          LL    +   +S
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQALSGRFNS 143

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 19/128 (14%)

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVR----------- 111
             L +++  G  D+ + ++    DPS     GI  LH+A   G  E+V+           
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 112 -----LLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMV 166
                  PLH AA    V++ + L+  GA     +Y+    +       +  E+G  +  
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA---DKCEEMEEGYTQCS 119

Query: 167 RLLLSYGA 174
           + L     
Sbjct: 120 QFLYGVQE 127

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
             I  + G  PLH AA+ G++  V + ++  +     +++ G T    A  +G  ++  L
Sbjct: 92  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 151

Query: 80  LLMYG 84
           +   G
Sbjct: 152 MQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 26/155 (16%), Positives = 38/155 (24%), Gaps = 11/155 (7%)

Query: 29  TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPS 88
             L  AA  G ++ +   L+   +    ++  G T L            RLLL       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 89  DSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS 148
               G       A       +  LL           E    L     +  L         
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 149 LPSR----------PLHDAAEKGCVEMVRLLLSYG 173
             S               A   G  E+V L+ + G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 6e-04
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 153 PLHDAAEKGCVEMVRLLLSYGADPLLASYAGH 184
            L  AA +G +E +  LL    +    +  G 
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 32/150 (21%), Positives = 42/150 (28%), Gaps = 12/150 (8%)

Query: 63  TPLHEAASHGWLDIARLLLMYGADPSDSAIG---------GIRPLHDAAEKGCVEMVRLL 113
             L EAA  G  D  R+L+  GA  +   +G                             
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 114 PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYG 173
              D                       +       L    LH A E    E+V LL+ YG
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 174 ADPLLASYAGHTPLSITSD---ETTRKLLQ 200
           AD    S    T   I+ D   E   ++LQ
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 8e-05
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 20  WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARL 79
                    T LH A    + + V   ++  +     +     T    +  +G  D+A +
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEI 151

Query: 80  L 80
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 8e-05
 Identities = 31/149 (20%), Positives = 45/149 (30%), Gaps = 47/149 (31%)

Query: 29  TPLHRAARLGYIDAVAYCLEK-------------------------------FSHGPAPK 57
             L  AAR G  D V   +                                        +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 58  DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL---- 113
                TPLH AAS G  +I  +LL +GAD +   +  +  LH A E    E+V LL    
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 114 ------------PLHDAAEKGCVEMVRLL 130
                           + + G  ++  +L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-05
 Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 61  GYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAE 120
               L  AA+ G ++  R LL  GA+P+     G RP+             LL       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 121 KGCVEMVRLLLSYGADPLLASYAVYFLSLPSR----------PLHDAAEKGCVEMVRLLL 170
                 +   +   A        V      +R          P+  A E G  ++ R L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 171 S 171
           +
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 15/121 (12%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
               L  AA  G ++ V   LE  ++  AP                 +    LL     +
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLL---------------PLHDAAEKGCVEMVRLLL 131
            +D A         A E     +V L                P+  A E G  ++ R L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 132 S 132
           +
Sbjct: 123 A 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 22/153 (14%), Positives = 36/153 (23%), Gaps = 8/153 (5%)

Query: 27  GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD 86
               L  AA  G +  V   L +    P   +  G T L             LL    + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 87  PSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYF 146
                 G       A       +  L+                +     +   A  +   
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 147 LSLP--------SRPLHDAAEKGCVEMVRLLLS 171
                         PL  A ++G  ++V +L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-37  Score=233.94  Aligned_cols=179  Identities=31%  Similarity=0.298  Sum_probs=165.6

Q ss_pred             EeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q psy5702          21 VINKHHGETPLHRAARLGYIDAVAYCLEKFSHG---PAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        21 ~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                      .+-+.+|.||||+||+.++.+++++|++. +.+   ++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            34578999999999999999999999997 444   56788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChhHHHHh---------------------------------------------------------------H
Q psy5702          98 LHDAAEKGCVEMVRLL---------------------------------------------------------------P  114 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l---------------------------------------------------------------~  114 (235)
                      ||+|+..++.++++++                                                               |
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999998887                                                               8


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchh
Q psy5702         115 LHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDET  194 (235)
Q Consensus       115 l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~  194 (235)
                      ||+|+..++.+++++|++.+.+.+....     ..|.||||+|++.++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             ccccccccccccccchhccccccccccc-----ccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            9999999999999999999988776542     68999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcc
Q psy5702         195 TRKLLQYHLAD  205 (235)
Q Consensus       195 ~~~~l~~~~~~  205 (235)
                      ..++++.++..
T Consensus       237 ~~~i~~~Ll~~  247 (255)
T d1oy3d_         237 NPILARLLRAH  247 (255)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHc
Confidence            99998888765

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=219.88  Aligned_cols=190  Identities=31%  Similarity=0.413  Sum_probs=176.5

Q ss_pred             HHHH-HHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q psy5702           7 GDTV-EDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA   85 (235)
Q Consensus         7 ~~~~-~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   85 (235)
                      .+.+ +.+..++.+++.+|..|+||||+|+..|+.+++++++.. +......+..+.++++.++..++.+++++|++.|+
T Consensus        16 ~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~   94 (223)
T d1uoha_          16 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA   94 (223)
T ss_dssp             HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccccccccccccccccccccccccchhHHHhccCc
Confidence            3445 555677889999999999999999999999999999998 67777788899999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccC
Q psy5702          86 DPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSL  149 (235)
Q Consensus        86 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  149 (235)
                      +++..|..|.||||+|+..++.+++++|                |+|.|+..+..+++++|...+.+++..+      ..
T Consensus        95 d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d------~~  168 (223)
T d1uoha_          95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD------TE  168 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC------TT
T ss_pred             eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeecc------CC
Confidence            9999999999999999999999999998                9999999999999999999999999888      78


Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      |+||||.|+..|+.+++++|+++|++++.+|..|+||||+|. .+..++++.+++
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             CCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999999999999999999999999985 688889988764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.1e-34  Score=218.75  Aligned_cols=187  Identities=22%  Similarity=0.227  Sum_probs=163.3

Q ss_pred             HHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHh-------CCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702          11 EDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEK-------FSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus        11 ~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~-------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +.+.+.+.+. .++.+|+||||+||..|+.+++++|+..       .|+++|..|..|.||||+|+..|+.+++++|++.
T Consensus        18 ~~l~~~~~n~-~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~   96 (277)
T d2fo1e1          18 EPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA   96 (277)
T ss_dssp             SCCSTTTTTT-CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHhcCCCc-CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccc
Confidence            3344444442 2235799999999999998888777532       3789999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHh--------------------------------------------------
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------------------------------  113 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l--------------------------------------------------  113 (235)
                      |++++.++..|.||+++|...++.++...+                                                  
T Consensus        97 Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (277)
T d2fo1e1          97 GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG  176 (277)
T ss_dssp             TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS
T ss_pred             ccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccc
Confidence            999999999999999999999998888776                                                  


Q ss_pred             -------------HHHHHHHcCCHHHHHHHH-HcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCc
Q psy5702         114 -------------PLHDAAEKGCVEMVRLLL-SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLA  179 (235)
Q Consensus       114 -------------~l~~a~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  179 (235)
                                   +++.++..++.+++++++ ..+.+.+..+      ..|+||||+|++.|+.+++++|+++|+|++.+
T Consensus       177 ~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d------~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD------EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccccCCCCccccccccccccccccccccccccccccC------CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence                         699999999999998765 5577777776      78999999999999999999999999999999


Q ss_pred             cccCCChhhhccchhhHHHHHHhhc
Q psy5702         180 SYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       180 ~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                      |..|.||||+|+..+..++++.+..
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999998764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.8e-33  Score=217.71  Aligned_cols=192  Identities=29%  Similarity=0.327  Sum_probs=166.3

Q ss_pred             chHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           5 SLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      +-.+.++.|++.|.+++.+|..|.||||+|+..|+.+++++|+++ +......+..+.+||+.++..++.++++.|++.|
T Consensus        51 G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~  129 (291)
T d1s70b_          51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (291)
T ss_dssp             TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccccccccccccccchhhcccccC
Confidence            446788888888888888888899999999999999999988887 6677777888889999999999999999998888


Q ss_pred             CCCCCCCCCCCcHHHHHHHhCChhHHHHh-------------------------------------------HHHHHHHc
Q psy5702          85 ADPSDSAIGGIRPLHDAAEKGCVEMVRLL-------------------------------------------PLHDAAEK  121 (235)
Q Consensus        85 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-------------------------------------------~l~~a~~~  121 (235)
                      +..+..+..+.+++++|+..+..+.+..+                                           |++.|+..
T Consensus       130 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            88888888888888888777666665554                                           89999999


Q ss_pred             CCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHH
Q psy5702         122 GCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQY  201 (235)
Q Consensus       122 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~  201 (235)
                      |+.++++.|++.|++++..+      ..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++. ..+++..
T Consensus       210 ~~~~~~~~Ll~~g~din~~~------~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e~-~~~~L~~  282 (291)
T d1s70b_         210 GYTEVLKLLIQARYDVNIKD------YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEE  282 (291)
T ss_dssp             TCHHHHHHHHTTTCCTTCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHH
T ss_pred             CChhhhcccccceecccccc------cCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH-HHHHHHH
Confidence            99999999999999999888      7899999999999999999999999999999999999999999873 4555555


Q ss_pred             hhc
Q psy5702         202 HLA  204 (235)
Q Consensus       202 ~~~  204 (235)
                      +..
T Consensus       283 ~~~  285 (291)
T d1s70b_         283 LQK  285 (291)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=204.48  Aligned_cols=169  Identities=32%  Similarity=0.394  Sum_probs=155.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLE---KFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAA  102 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  102 (235)
                      +|.||||+||..|+.++++.|++   ..+.+++..|..|.||||+|+..|+.+++++|++.|++.+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999986   357889999999999999999999999999999999999999999999999999


Q ss_pred             HhCChhHHHHh------------------------------------------------------HHHHHHHcCCHHHHH
Q psy5702         103 EKGCVEMVRLL------------------------------------------------------PLHDAAEKGCVEMVR  128 (235)
Q Consensus       103 ~~~~~~~~~~l------------------------------------------------------~l~~a~~~~~~~~~~  128 (235)
                      ...+.++++..                                                      +++.|+..+...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            98888877655                                                      788999999999999


Q ss_pred             HHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHH
Q psy5702         129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQ  200 (235)
Q Consensus       129 ~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~  200 (235)
                      .++++|...+..+      ..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.++++
T Consensus       162 ~~~~~~~~~~~~d------~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQM------YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBC------TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhcccccccc------ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999998888777      78999999999999999999999999999999999999999999999888875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-34  Score=213.24  Aligned_cols=174  Identities=30%  Similarity=0.313  Sum_probs=154.5

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q psy5702          26 HGETPLHRAARLGYIDAVA----YCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDA  101 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~----~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  101 (235)
                      +|.||||+|+..|+.+++.    ++... +..++.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||++.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~-~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC-CCCcccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999864444    44444 778899999999999999999999999999999999999999999999999


Q ss_pred             HHhCChhHHHHh----------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHh
Q psy5702         102 AEKGCVEMVRLL----------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAE  159 (235)
Q Consensus       102 ~~~~~~~~~~~l----------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~  159 (235)
                      +..++.++++.+                      |++.|+..++.+.+++++..|..++..+.     ..|.||||+|++
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-----~~G~T~L~~A~~  154 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-----CNGRTALHLAVD  154 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----TTCCCHHHHHHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccc-----cCCCCccccccc
Confidence            999999998877                      89999999999999999999998877653     579999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         160 KGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       160 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .|+.+++++|+++|+|++.+|..|+||||+|+..+..++++++...
T Consensus       155 ~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         155 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999999999999999999999998888888877665

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=206.13  Aligned_cols=190  Identities=25%  Similarity=0.365  Sum_probs=128.3

Q ss_pred             HHHHHHhh-hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           8 DTVEDVGA-EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPA---PKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         8 ~~~~~~~~-~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +.++.++. .+.+++.+|.+|+||||+|+..|+.+++++|++. +++++   ..+..|.+|+++++..+..++++.++..
T Consensus        14 ~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          14 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hccccccccccccccccccccccccccccccccccc
Confidence            44444444 3456666666666666666666666666666665 44443   3445566666666666666666666665


Q ss_pred             CCCC--CCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcC-CCCcchhhhh
Q psy5702          84 GADP--SDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYG-ADPLLASYAV  144 (235)
Q Consensus        84 g~~~--~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g-~~~~~~~~~~  144 (235)
                      +...  ...+..+.++++.++..++.++++.+                |+|.|+..|+.+++++|++.+ .+++..+   
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d---  169 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD---  169 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCC---
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccc---
Confidence            5443  33445566666666666666666655                788888888888888888776 4566666   


Q ss_pred             hhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCCCccccCCChhhhccchhhHHHHHHhhc
Q psy5702         145 YFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPLLASYAGHTPLSITSDETTRKLLQYHLA  204 (235)
Q Consensus       145 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~  204 (235)
                         ..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|++.+..+++...|+
T Consensus       170 ---~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~~~~~Ll~~g~  227 (229)
T d1ixva_         170 ---KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVV  227 (229)
T ss_dssp             ---TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCHHHHHHHHHHCC
T ss_pred             ---cccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhHHHHHHHHHcCC
Confidence               678888888888888888888886 488888888888888888887766666655554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=220.40  Aligned_cols=201  Identities=31%  Similarity=0.382  Sum_probs=161.4

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHH--------
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLD--------   75 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~--------   75 (235)
                      .+..+.|+.++..|.+++.+|..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..|+.+        
T Consensus        10 ~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          10 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             HTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            3567899999999999999999999999999999999999999998 8889999999999999988766554        


Q ss_pred             ----------------------------------------------------------HHHHHHhcCCCCCCCCCCCCcH
Q psy5702          76 ----------------------------------------------------------IARLLLMYGADPSDSAIGGIRP   97 (235)
Q Consensus        76 ----------------------------------------------------------~v~~Ll~~g~~~~~~~~~g~t~   97 (235)
                                                                                +++.|++.|++++..+..|.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~  168 (408)
T d1n11a_          89 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP  168 (408)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH
T ss_pred             hhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchH
Confidence                                                                      4556666777788888888899


Q ss_pred             HHHHHHhCChhHHHHh----------------------------------------------------------------
Q psy5702          98 LHDAAEKGCVEMVRLL----------------------------------------------------------------  113 (235)
Q Consensus        98 l~~a~~~~~~~~~~~l----------------------------------------------------------------  113 (235)
                      |+.|+..++.+++++|                                                                
T Consensus       169 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  248 (408)
T d1n11a_         169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA  248 (408)
T ss_dssp             HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhh
Confidence            9999999988888876                                                                


Q ss_pred             ------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhh---------------------------hhhcc
Q psy5702         114 ------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYA---------------------------VYFLS  148 (235)
Q Consensus       114 ------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~---------------------------~~~~~  148 (235)
                                        |++.|+..++.+++++|+++|++++.....                           ...+.
T Consensus       249 ~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~  328 (408)
T d1n11a_         249 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK  328 (408)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT
T ss_pred             hhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCC
Confidence                              566677777777777777777665433311                           11226


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .|+||||.|+++|+.+++++|+++||+++.+|..|+||||+|+..++.++++.+..-
T Consensus       329 ~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         329 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            788888888888888888888888888888888888888888888777777655333

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=198.72  Aligned_cols=198  Identities=27%  Similarity=0.330  Sum_probs=177.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      ..++|+.+++.|+.+.++.++...+..++..|..|+||||+|+..|+.+++++++..+......+..+.++++.+...++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            46889999999999999999988788899999999999999999999999999999999999888999999999999999


Q ss_pred             hhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHH
Q psy5702         107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLL  170 (235)
Q Consensus       107 ~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  170 (235)
                      .+++++|                |||+|+..|+.+++++|+++|++++..+      ..|.||||+|+..+..+++++|.
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~------~~~~t~L~~a~~~~~~~~~~~L~  156 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------HYEATAMHRAAAKGNLKMIHILL  156 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcC------CCCCccchhhhhcCCcchhhhhc
Confidence            9999987                8999999999999999999999998887      78999999999999999999999


Q ss_pred             HCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCC
Q psy5702         171 SYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPL  233 (235)
Q Consensus       171 ~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  233 (235)
                      +.|++++.+|..|.||||+|+..+..++++.++..  +.+....+..|.+++..+. .|+..+
T Consensus       157 ~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~--Gad~~~~d~~g~tpl~~A~-~~~~~i  216 (223)
T d1uoha_         157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ--GASIYIENKEEKTPLQVAK-GGLGLI  216 (223)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHCC-TTHHHH
T ss_pred             cccceeeeccCCCCceeccccccCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-CCCHHH
Confidence            99999999999999999999999988998888754  3344445556667777664 455443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-30  Score=197.13  Aligned_cols=164  Identities=30%  Similarity=0.277  Sum_probs=148.8

Q ss_pred             chHHHHHHHhhhhce---eEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRS---WVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLL   81 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~---~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   81 (235)
                      +..++++.+++.+.+   ++.+|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..++.+++++|+
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLL   98 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccchhhhhhhccCchHHHHHHH
Confidence            446788888888776   668899999999999999999999999998 8999999999999999999999999999987


Q ss_pred             hcCC-----------------------------------------------CCCCCCCCCCcHHHHHHHhCChhHHHHh-
Q psy5702          82 MYGA-----------------------------------------------DPSDSAIGGIRPLHDAAEKGCVEMVRLL-  113 (235)
Q Consensus        82 ~~g~-----------------------------------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~l-  113 (235)
                      +.+.                                               +++.++..|.||||+|+..++.+++++| 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  178 (255)
T d1oy3d_          99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (255)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchh
Confidence            5321                                               1234567899999999999999999998 


Q ss_pred             ----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         114 ----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       114 ----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                                      |||.|+..|+.+++++|+++|++++..+      ..|.||||+|+..++.+++++|+++||+
T Consensus       179 ~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d------~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM------YGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                            9999999999999999999999999888      7899999999999999999999999997

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.3e-29  Score=186.34  Aligned_cols=189  Identities=28%  Similarity=0.295  Sum_probs=167.8

Q ss_pred             HHHHHHHhhhhceeEe-ecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q psy5702           7 GDTVEDVGAEVRSWVI-NKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGA   85 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   85 (235)
                      .|+|+.|++.|.+++. .|.+|.||||+||+.|+.+++++|+.. +..++..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccccccccccccccccccccccccccccccc
Confidence            5899999999999987 589999999999999999999999998 88899999999999999999998887766665533


Q ss_pred             C-CCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhcc
Q psy5702          86 D-PSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLS  148 (235)
Q Consensus        86 ~-~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  148 (235)
                      . .......+.++.+.+.........+.+                +++.++..+..++++.++..+.+++..+      .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d------~  154 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD------D  154 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC------T
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccc------c
Confidence            3 333455677788888877777777765                7899999999999999999999998887      7


Q ss_pred             CCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHh
Q psy5702         149 LPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYH  202 (235)
Q Consensus       149 ~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~  202 (235)
                      .|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+..++++.+
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            899999999999999999999999999999999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=198.15  Aligned_cols=149  Identities=34%  Similarity=0.473  Sum_probs=109.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKG  105 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  105 (235)
                      .|.|||++|+..++.+++++++.. +...+..+..|.+|++.|++.++.+++++|++.|++++..+..+.|||+.++..+
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~  308 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG  308 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS
T ss_pred             CCCCHHHHHHHhCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccC
Confidence            333444444444444444444433 3344455666777777777777778888888888888777777788888888887


Q ss_pred             ChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHH
Q psy5702         106 CVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLL  169 (235)
Q Consensus       106 ~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L  169 (235)
                      +.++++++                |||.|+..|+.+++++|+++|++++..+      ..|+||||+|++.|+.+++++|
T Consensus       309 ~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d------~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS------SDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC------SSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHH
Confidence            77777776                8999999999999999999999999888      8999999999999999999866


Q ss_pred             HH---CCCCCCCccc
Q psy5702         170 LS---YGADPLLASY  181 (235)
Q Consensus       170 l~---~ga~~~~~~~  181 (235)
                      ..   ++.+....+.
T Consensus       383 ~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         383 KVVTDETSFVLVSDK  397 (408)
T ss_dssp             HHHCCCCSSCC----
T ss_pred             HHHHhcccccccccc
Confidence            53   5666666554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-28  Score=173.47  Aligned_cols=151  Identities=27%  Similarity=0.344  Sum_probs=137.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChh
Q psy5702          29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVE  108 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  108 (235)
                      ..|+.||..|+.++|++|++..+.+++..|..|.||||+|+. ++.+++++|++.+.+++..+..|.+|++.++..+   
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~---   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTG---   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccc---
Confidence            469999999999999999998888999999999999999874 8899999999999999999999999999877664   


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhh
Q psy5702         109 MVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLS  188 (235)
Q Consensus       109 ~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  188 (235)
                                    +.++++.++++|++++..+      ..|.||||+|++.|+.+++++|+ .|++++.+|..|+||||
T Consensus        80 --------------~~~~~~~~l~~~~~~n~~~------~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          80 --------------FLDTLKVLVEHGADVNVPD------GTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLE  138 (156)
T ss_dssp             --------------CHHHHHHHHHTTCCSCCCC------TTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHH
T ss_pred             --------------ccccccccccccccccccc------CCCCeeecccccccccccccccc-ccccccccCCCCCCHHH
Confidence                          5566778899999998887      78999999999999999999887 78999999999999999


Q ss_pred             hccchhhHHHHHHhhc
Q psy5702         189 ITSDETTRKLLQYHLA  204 (235)
Q Consensus       189 ~a~~~~~~~~l~~~~~  204 (235)
                      +|+..+..++++.++.
T Consensus       139 ~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         139 LALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHSCCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHh
Confidence            9999999999998765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.2e-28  Score=191.29  Aligned_cols=198  Identities=24%  Similarity=0.286  Sum_probs=164.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q psy5702          27 GETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGC  106 (235)
Q Consensus        27 g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  106 (235)
                      +.|+|+.||..|+.++|++|++. |.+++..|..|.||||+|+..|+.+++++|++.|.+....+..+.+|++.++..++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            45899999999999999999998 88999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHh----------------HHHHHHHcCCHHHHHHHHHc-CCCCcchhhh--------------------hhhccC
Q psy5702         107 VEMVRLL----------------PLHDAAEKGCVEMVRLLLSY-GADPLLASYA--------------------VYFLSL  149 (235)
Q Consensus       107 ~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~-g~~~~~~~~~--------------------~~~~~~  149 (235)
                      .++++.+                +++.|+..+..+.++.++.. +.++......                    ...+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            9999887                67788877888888777753 3332111110                    111267


Q ss_pred             CCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCccccccc
Q psy5702         150 PSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQM  227 (235)
Q Consensus       150 ~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (235)
                      |.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..+..++++.++...  -+....+..|.+++..+..
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G--adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCTTTSCCS
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887653  2333334555566666543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=173.49  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=138.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChh
Q psy5702          29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVE  108 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  108 (235)
                      ++||+||..|+.++++.|+++ +.+++.+|..|.||||+|+ .++.+++++|++.|++++..+..+.++++.++..+.  
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~--   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF--   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc--
Confidence            799999999999999999998 8899999999999999885 789999999999999999999999999999777654  


Q ss_pred             HHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCC-CCCCccccCCChh
Q psy5702         109 MVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGA-DPLLASYAGHTPL  187 (235)
Q Consensus       109 ~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l  187 (235)
                                     .+..+.++.++.+++..+      ..|.+|+|.|++.++.+++++|+++++ +++.+|..|+|||
T Consensus        79 ---------------~~~~~~l~~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          79 ---------------LDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             ---------------HHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             ---------------cccccccccccccccccc------cccccccccccccccccccccccccccccccccCCCCCCHH
Confidence                           455677888998888877      789999999999999999999999876 8999999999999


Q ss_pred             hhccchhhHHHHHHhhcc
Q psy5702         188 SITSDETTRKLLQYHLAD  205 (235)
Q Consensus       188 ~~a~~~~~~~~l~~~~~~  205 (235)
                      |+|+..++.++++.+++.
T Consensus       138 ~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhc
Confidence            999999999999988653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.9e-27  Score=167.52  Aligned_cols=150  Identities=32%  Similarity=0.358  Sum_probs=135.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCh
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV  107 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  107 (235)
                      .|||+.|++.|+.++|++||++ +++++ .|..|.||||+|+..++.++++.++.........+..+.++++.++...  
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG--   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT--
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccc--
Confidence            3899999999999999999998 66666 6899999999999999999999999998888888888888888877664  


Q ss_pred             hHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChh
Q psy5702         108 EMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPL  187 (235)
Q Consensus       108 ~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  187 (235)
                                     ..++++++..+|++.+..+      ..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        79 ---------------~~~~~~~l~~~~~~~~~~~------~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          79 ---------------HANIVEVLLKHGADVNAKD------MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             ---------------CHHHHHHHHTTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ---------------cceeeecccccCCcccccc------ccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH
Confidence                           4456677888999988877      7999999999999999999999999999999999999999


Q ss_pred             hhccchhhHHHHHHh
Q psy5702         188 SITSDETTRKLLQYH  202 (235)
Q Consensus       188 ~~a~~~~~~~~l~~~  202 (235)
                      |+|+..++.++++.+
T Consensus       138 ~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         138 DISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHhC
Confidence            999999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-26  Score=179.25  Aligned_cols=195  Identities=28%  Similarity=0.339  Sum_probs=134.4

Q ss_pred             cchHHHHHHHhhhhceeEeec-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy5702           4 QSLGDTVEDVGAEVRSWVINK-HHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLM   82 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d-~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   82 (235)
                      .+-.+.|+.|++.|.+++.++ ..|.||||+|+..|+.+++++|++. +......+..+.+|.+.+...+..+....++.
T Consensus        15 ~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-cccccccccccchhhHHHhhcCCccccchhhh
Confidence            345678888888888887665 4688899999888888888888876 44454455555555555555555555555555


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh--------------------------HHHHHHHcCCHHHHHHHH-----
Q psy5702          83 YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL--------------------------PLHDAAEKGCVEMVRLLL-----  131 (235)
Q Consensus        83 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l--------------------------~l~~a~~~~~~~~~~~l~-----  131 (235)
                      ...+....+..+.++++.++..++...+..+                          |||.|+..|+.+++++|+     
T Consensus        94 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  173 (285)
T d1wdya_          94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  173 (285)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred             hcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCC
Confidence            4444444444444555555444444433322                          455555555555555555     


Q ss_pred             ---------------------------------HcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH-CCCCCC
Q psy5702         132 ---------------------------------SYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS-YGADPL  177 (235)
Q Consensus       132 ---------------------------------~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~~  177 (235)
                                                       ++|++++..+      ..|.||||+|++.++.+++++|++ .|++++
T Consensus       174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~------~~g~t~L~~a~~~~~~~~v~~lL~~~g~din  247 (285)
T d1wdya_         174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG------ERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC------TTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             CcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccC------CCCCCccchhhhcCcHHHHHHHHHcCCCCCc
Confidence                                             4444444333      689999999999999999999998 599999


Q ss_pred             CccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         178 LASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       178 ~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                      .+|.+|.||||+|++.++.++++.+++.
T Consensus       248 ~~d~~G~TpL~~A~~~~~~eiv~~Ll~~  275 (285)
T d1wdya_         248 DTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999998888888776554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2e-27  Score=185.55  Aligned_cols=163  Identities=20%  Similarity=0.209  Sum_probs=118.3

Q ss_pred             hceeEee-cCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH-------HHHHHHHhcCCCCC
Q psy5702          17 VRSWVIN-KHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWL-------DIARLLLMYGADPS   88 (235)
Q Consensus        17 ~~~~~~~-d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~~   88 (235)
                      +.+++.+ |..|+||||+||..|+.+++++|++. +++++.+|..|.||||.|+..++.       ++++++.   ..+.
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            4456655 89999999999999999999999988 899999999999999999987753       3444443   3456


Q ss_pred             CCCCCCCcHHHHHHHhCCh----hHHHHh-------------------------HHHHHHHcCCHHH-----HHHHHHcC
Q psy5702          89 DSAIGGIRPLHDAAEKGCV----EMVRLL-------------------------PLHDAAEKGCVEM-----VRLLLSYG  134 (235)
Q Consensus        89 ~~~~~g~t~l~~a~~~~~~----~~~~~l-------------------------~l~~a~~~~~~~~-----~~~l~~~g  134 (235)
                      ..|..|.||||+++..+..    ..+++.                         .++.+........     +..++.. 
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  250 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-  250 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH-
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc-
Confidence            6778899999988764432    222211                         0111110000000     1112222 


Q ss_pred             CCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhcc
Q psy5702         135 ADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITS  191 (235)
Q Consensus       135 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~  191 (235)
                       .+|.++      ..|+||||+|++.|+.+++++|+++||+++++|..|.|||++|+
T Consensus       251 -~in~~D------~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 -MLNAQD------SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTTCCC------TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -CccCCC------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             134444      78999999999999999999999999999999999999999996

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-27  Score=176.08  Aligned_cols=162  Identities=24%  Similarity=0.270  Sum_probs=143.3

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGAD   86 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   86 (235)
                      .++++.+..++.+++.+|..|+||||+|+..|+.+++++|++. +.+++..|..|.+||++|+..++.++++.|++.+..
T Consensus        19 ~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~   97 (221)
T d1iknd_          19 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT   97 (221)
T ss_dssp             SCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTT
T ss_pred             HHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhccc
Confidence            3455667788999999999999999999999999999999988 888999999999999999999999999999998766


Q ss_pred             CC------CCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhh
Q psy5702          87 PS------DSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYA  143 (235)
Q Consensus        87 ~~------~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~  143 (235)
                      ..      .....|.||+|.|+..++.++++++                 |+|.|+..|+.+++++|+++|++++..+  
T Consensus        98 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~--  175 (221)
T d1iknd_          98 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT--  175 (221)
T ss_dssp             TSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--
T ss_pred             ccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccC--
Confidence            43      3344688999999999999999887                 9999999999999999999999999988  


Q ss_pred             hhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         144 VYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       144 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                          ..|.||||+|+..++.+++++|++.+.+
T Consensus       176 ----~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         176 ----YQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             ----TTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ----CCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence                8999999999999999999999998654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.4e-27  Score=159.78  Aligned_cols=112  Identities=33%  Similarity=0.396  Sum_probs=100.4

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchh
Q psy5702          62 YTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLAS  141 (235)
Q Consensus        62 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~  141 (235)
                      .|||++|++.|+.+++++|++.|++++.++..|.||||+|+..++.                 +++++|+++|++++..+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~-----------------~~~~~ll~~g~din~~d   65 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL-----------------EILEFLLLKGADINAPD   65 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTT-----------------THHHHHHHSSCTTTCCS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccc-----------------ccccccccccceeeecc
Confidence            4799999999999999999999999999999999999998877655                 45677889999998887


Q ss_pred             hhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhH
Q psy5702         142 YAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTR  196 (235)
Q Consensus       142 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~  196 (235)
                            ..|+||||+|+.+|+.+++++|+++|+|++.+|..|.||||+|......
T Consensus        66 ------~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~i~  114 (118)
T d1myoa_          66 ------KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIK  114 (118)
T ss_dssp             ------SSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSSTTTG
T ss_pred             ------cccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhHHHHH
Confidence                  7899999999999999999999999999999999999999999765433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.8e-26  Score=170.59  Aligned_cols=187  Identities=25%  Similarity=0.197  Sum_probs=164.2

Q ss_pred             HHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh-----
Q psy5702          40 IDAVAYCLEKFSHGPAP-KDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----  113 (235)
Q Consensus        40 ~~~v~~li~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----  113 (235)
                      .++|++|+++ |.+++. .|.+|.||||+|++.|+.+++++|++.|++++.++..+.++++.+...+........     
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            5899999998 778876 588999999999999999999999999999999999999999999988877765544     


Q ss_pred             ------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccc
Q psy5702         114 ------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY  181 (235)
Q Consensus       114 ------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  181 (235)
                                  ..+.+.........+.|...+++++..+      ..|.|||+.++..+...++..+++++++++..|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~------~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~  154 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD------NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD  154 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBC------TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccC------CCCCCcchhhcccCcceeeeeecccccccccccc
Confidence                        6667778888889999999999998887      7899999999999999999999999999999999


Q ss_pred             cCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCCC
Q psy5702         182 AGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK  235 (235)
Q Consensus       182 ~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  235 (235)
                      .|.||||+|+..+..++++.++...  .+....+..|.+++..+...|+.+++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~g--ad~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNF--ANREITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            9999999999999999999888653  334444566778999999998877654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=3.8e-25  Score=169.96  Aligned_cols=157  Identities=21%  Similarity=0.217  Sum_probs=138.0

Q ss_pred             HHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC---C
Q psy5702           9 TVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYG---A   85 (235)
Q Consensus         9 ~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~   85 (235)
                      ..+.++..|++++.+|.+|+||||+|+..|+.+++++|+++ |++++..+..|.|||++|+..++.++++.+...+   .
T Consensus        56 ~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  134 (277)
T d2fo1e1          56 EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  134 (277)
T ss_dssp             HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             chhHHHHcCCCccccCCCCCeeecccccccccccccccccc-ccccccccccccccccchhhhcchhhhhhhhhcccccc
Confidence            34566788999999999999999999999999999999998 8899999999999999999999988877775421   0


Q ss_pred             C--------------------------------------------CCCCCCCCCcHHHHHHHhCChhHHHHh--------
Q psy5702          86 D--------------------------------------------PSDSAIGGIRPLHDAAEKGCVEMVRLL--------  113 (235)
Q Consensus        86 ~--------------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~l--------  113 (235)
                      .                                            .+..+..|.||||+++..++.++++++        
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~  214 (277)
T d2fo1e1         135 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  214 (277)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             cccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccc
Confidence            0                                            123345688999999999999998765        


Q ss_pred             ---------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC
Q psy5702         114 ---------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY  172 (235)
Q Consensus       114 ---------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~  172 (235)
                               |||.|+..|+.+++++|+++|++++..+      ..|+||||+|++.|+.+++++|+++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d------~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD------ATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC------SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcC------CCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                     9999999999999999999999999988      8999999999999999999999864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.4e-28  Score=193.44  Aligned_cols=186  Identities=16%  Similarity=0.075  Sum_probs=147.8

Q ss_pred             eeEeecCCCCcHHHHHHHcCCHHHHHH---HHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC--CC
Q psy5702          19 SWVINKHHGETPLHRAARLGYIDAVAY---CLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSA--IG   93 (235)
Q Consensus        19 ~~~~~d~~g~~~L~~A~~~~~~~~v~~---li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~   93 (235)
                      +.+.++..|.||||+|++.|+.+++++   |++. +.+++..|..|.||||+|++.|+.+++++|++.|++++..+  ..
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            344677789999999999999887776   4555 88999999999999999999999999999999999998765  45


Q ss_pred             CCcHHHHHHHhCChhHHHHh-------------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhh---------
Q psy5702          94 GIRPLHDAAEKGCVEMVRLL-------------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVY---------  145 (235)
Q Consensus        94 g~t~l~~a~~~~~~~~~~~l-------------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~---------  145 (235)
                      |.||||+|+..|+.+++++|                   |++.|+.+|+.+++++|++.|++++.......         
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            89999999999999999998                   56778899999999999988765432211000         


Q ss_pred             ------------------hc----------------cCCCchHHHHHhcCCHHHHHHHHHCCCC-----CCCccccCCCh
Q psy5702         146 ------------------FL----------------SLPSRPLHDAAEKGCVEMVRLLLSYGAD-----PLLASYAGHTP  186 (235)
Q Consensus       146 ------------------~~----------------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~t~  186 (235)
                                        ..                ..+.++++.|...+..+++++|++.+..     ....+.+|.||
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence                              00                0123577888888899999999987653     34455679999


Q ss_pred             hhhccchhhHHHHHHhhcc
Q psy5702         187 LSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       187 l~~a~~~~~~~~l~~~~~~  205 (235)
                      ||+|++.|+.++++.++.-
T Consensus       321 LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         321 LRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHcCcHHHHHHHhCC
Confidence            9999999999999998864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.3e-26  Score=155.15  Aligned_cols=118  Identities=30%  Similarity=0.417  Sum_probs=53.7

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhh
Q psy5702          63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASY  142 (235)
Q Consensus        63 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~  142 (235)
                      ++||+|++.|+.+++++|++.|++++.++..|.||+|+|+ .                 |+.+++++|+++|++++..+.
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-----------------g~~~~v~~Ll~~ga~~~~~~~   66 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-----------------GSARVAELLLLHGAEPNCADP   66 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-----------------TCHHHHHHHHTTTCCCCCCCT
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-----------------ccccccccccccccccccccc
Confidence            3444444444444444444444444444444444444322 1                 222334444444444444331


Q ss_pred             hhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhh
Q psy5702         143 AVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHL  203 (235)
Q Consensus       143 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~  203 (235)
                           ..+.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+..++.+++++++
T Consensus        67 -----~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          67 -----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             -----TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             -----cccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence                 11223455555555555555555555555555555555555555555555544443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=168.24  Aligned_cols=207  Identities=29%  Similarity=0.349  Sum_probs=164.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKD-NAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      ++.|+||.|++.|+.++|++|+++ |++++.++ ..|.||||+|+..|+.+++++|++.+......+..+.+|.+.+...
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            356899999999999999999998 78887665 5799999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHh----------------HHHHHHHcCCHHHHHHHHHcCCCCcchh----hhhhhccCCCchHHHHHhcCCHH
Q psy5702         105 GCVEMVRLL----------------PLHDAAEKGCVEMVRLLLSYGADPLLAS----YAVYFLSLPSRPLHDAAEKGCVE  164 (235)
Q Consensus       105 ~~~~~~~~l----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~----~~~~~~~~~~t~L~~A~~~~~~~  164 (235)
                      +..+...+.                +++.|+..+....+..++....+++...    ........|.||||.|++.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            888877665                7999999999999999998876654332    22333467999999999998766


Q ss_pred             HHHHHH--------------------------------------HCCCCCCCccccCCChhhhccchhhHHHHHHhhccc
Q psy5702         165 MVRLLL--------------------------------------SYGADPLLASYAGHTPLSITSDETTRKLLQYHLADV  206 (235)
Q Consensus       165 ~v~~Ll--------------------------------------~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~  206 (235)
                      ++++|+                                      ++|++++.++..|.||||+|+..+..++++.++...
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            665554                                      445666777888999999999988888888877532


Q ss_pred             cCCCCCcccccCCCcccccccccCCCCC
Q psy5702         207 RGHEAPKWDFAGPASCFDKQMVGYEPLA  234 (235)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~  234 (235)
                       +.+....+..|.++++.+...|+..++
T Consensus       243 -g~din~~d~~G~TpL~~A~~~~~~eiv  269 (285)
T d1wdya_         243 -HIEINDTDSDGKTALLLAVELKLKKIA  269 (285)
T ss_dssp             -SCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -CCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence             222333445566777777777765443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-25  Score=151.19  Aligned_cols=121  Identities=28%  Similarity=0.390  Sum_probs=109.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHh
Q psy5702          26 HGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGI-RPLHDAAEK  104 (235)
Q Consensus        26 ~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~a~~~  104 (235)
                      .+.++||+|++.|+.+++++|+++ +.+++.++..|.||+|+|+ .|+.+++++|++.|++++.++..+. +|||+|+..
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            456899999999999999999997 8899999999999999775 7999999999999999999988765 699997776


Q ss_pred             CChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHH
Q psy5702         105 GCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLS  171 (235)
Q Consensus       105 ~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  171 (235)
                      |                 +.+++++|+++|++++..+      ..|+||||+|+++|+.+++++|+.
T Consensus        80 g-----------------~~~~v~~Ll~~ga~~~~~d------~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 G-----------------FLDTLVVLHRAGARLDVRD------AWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             T-----------------CHHHHHHHHHHTCCSSCCC------TTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             c-----------------ccccccccccccccccccc------CCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5                 5566788899999999888      899999999999999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-24  Score=161.82  Aligned_cols=162  Identities=23%  Similarity=0.323  Sum_probs=144.8

Q ss_pred             chHHHHHHHhhhhceeE---eecCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHhcCCHHHHHHH
Q psy5702           5 SLGDTVEDVGAEVRSWV---INKHHGETPLHRAARLGYIDAVAYCLEKFS-HGPAPKDNAGYTPLHEAASHGWLDIARLL   80 (235)
Q Consensus         5 ~~~~~~~~~~~~~~~~~---~~d~~g~~~L~~A~~~~~~~~v~~li~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   80 (235)
                      +..++++.+++.+.+++   ..+..|.+|+|+|+..+..+++..++.... ......+..+.++++.++..++.+++++|
T Consensus        45 g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  124 (229)
T d1ixva_          45 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL  124 (229)
T ss_dssp             TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            45689999999998876   456788999999999999999998887632 23445678899999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHh-----------------HHHHHHHcCCHHHHHHHHH-cCCCCcchhh
Q psy5702          81 LMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLL-----------------PLHDAAEKGCVEMVRLLLS-YGADPLLASY  142 (235)
Q Consensus        81 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l-----------------~l~~a~~~~~~~~~~~l~~-~g~~~~~~~~  142 (235)
                      +..|.+.+.++..|.||+|+|+..++.++++.|                 |||+|+..|+.+++++|++ .|++++..+ 
T Consensus       125 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d-  203 (229)
T d1ixva_         125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD-  203 (229)
T ss_dssp             HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCC-
T ss_pred             hhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcC-
Confidence            999999999999999999999999999999888                 9999999999999999997 599999988 


Q ss_pred             hhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         143 AVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       143 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                           ..|+||||+|+.   .+++++|+++|+|
T Consensus       204 -----~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         204 -----NKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             -----TTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             -----CCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence                 899999999984   5799999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=152.82  Aligned_cols=145  Identities=25%  Similarity=0.280  Sum_probs=131.1

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.++.++++|.+++.+|..|.||||+|+ .++.+++++|++. +.+++..+..|.++++.++..+..++++.|++.
T Consensus        11 ~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~   88 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF   88 (156)
T ss_dssp             HTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccc-ccccccccccCcccccccccccccccccccccc
Confidence            35678999999999999999999999999886 7899999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCC-CCcchhhhhhhccCCCchHHHHHhcCC
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGA-DPLLASYAVYFLSLPSRPLHDAAEKGC  162 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~t~L~~A~~~~~  162 (235)
                      +.+++..+..|.+|+++|+..++                 .+++++|++++. +.+..+      ..|.||||+|++.++
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~-----------------~~~~~~Ll~~~~~~~~~~d------~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          89 QADVNIEDNEGNLPLHLAAKEGH-----------------LRVVEFLVKHTASNVGHRN------HKGDTACDLARLYGR  145 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTC-----------------HHHHHHHHHHSCCCTTCCC------TTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccc-----------------ccccccccccccccccccC------CCCCCHHHHHHHcCC
Confidence            99999999999999999777654                 456677888875 667766      789999999999999


Q ss_pred             HHHHHHHHHCC
Q psy5702         163 VEMVRLLLSYG  173 (235)
Q Consensus       163 ~~~v~~Ll~~g  173 (235)
                      .+++++|+++|
T Consensus       146 ~~iv~~Ll~~G  156 (156)
T d1ihba_         146 NEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=153.19  Aligned_cols=142  Identities=25%  Similarity=0.316  Sum_probs=125.2

Q ss_pred             chHHHHHHHhh-hhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           5 SLGDTVEDVGA-EVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         5 ~~~~~~~~~~~-~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      +-.+.|+.++. .+.+.+.+|..|.||||+|+ .++.+++++|++. +.+++..+..|.+|++.++..++.++++.+++.
T Consensus        13 g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~   90 (156)
T d1bd8a_          13 GDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            34567777776 47899999999999999987 4889999999988 778899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..++.                 +++++|+ .|++++..+      ..|+||||+|++.|+.
T Consensus        91 ~~~~n~~~~~~~t~L~~A~~~~~~-----------------~i~~~L~-~~~~~~~~d------~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_          91 GADVNVPDGTGALPIHLAVQEGHT-----------------AVVSFLA-AESDLHRRD------ARGLTPLELALQRGAQ  146 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCH-----------------HHHHHHH-TTSCTTCCC------TTSCCHHHHHHHSCCH
T ss_pred             ccccccccCCCCeeeccccccccc-----------------ccccccc-ccccccccC------CCCCCHHHHHHHcCCH
Confidence            999999999999999998877655                 4556555 678888877      7999999999999999


Q ss_pred             HHHHHHHHC
Q psy5702         164 EMVRLLLSY  172 (235)
Q Consensus       164 ~~v~~Ll~~  172 (235)
                      +++++|++|
T Consensus       147 ~iv~~Ll~h  155 (156)
T d1bd8a_         147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.1e-25  Score=150.15  Aligned_cols=107  Identities=32%  Similarity=0.378  Sum_probs=98.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCh
Q psy5702          28 ETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCV  107 (235)
Q Consensus        28 ~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  107 (235)
                      .|||++|++.|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            3799999999999999999998 889999999999999999999999999999999999999999999999998876554


Q ss_pred             hHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHH
Q psy5702         108 EMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAA  158 (235)
Q Consensus       108 ~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~  158 (235)
                                       +++++|+++|++++..+      ..|.||||+|.
T Consensus        82 -----------------~~v~~Ll~~Gad~~~~d------~~G~t~l~~a~  109 (118)
T d1myoa_          82 -----------------SCVKLLLSKGADKTVKG------PDGLTALEATD  109 (118)
T ss_dssp             -----------------HHHHHHHTTCCCSSSSS------SSTCCCCCTCS
T ss_pred             -----------------hhhhhhhcccccceeeC------CCCCCHHHHHh
Confidence                             56788899999999988      89999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-24  Score=145.54  Aligned_cols=75  Identities=27%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q psy5702          29 TPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEK  104 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  104 (235)
                      ++|+.|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchh
Confidence            345555555555555555554 455555555555555555555555555555555555555555555555554443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-24  Score=145.02  Aligned_cols=119  Identities=26%  Similarity=0.341  Sum_probs=104.1

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhh
Q psy5702          63 TPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASY  142 (235)
Q Consensus        63 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~  142 (235)
                      ++|+.|+..|+.+++++|++.|++++.+|..|.||||+|+..++                 .+++++|+++|++++..+ 
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~-----------------~~~~~~ll~~g~~~~~~d-   64 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH-----------------TEIVKFLVQFGVNVNAAD-   64 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC-----------------HHHHHHHHHHTCCTTCCC-
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccc-----------------cccccccccccccccccc-
Confidence            57999999999999999999999999999999999999887654                 456777899999999888 


Q ss_pred             hhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccc-cCCChhhhc--cchhhHHHHHHhhc
Q psy5702         143 AVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASY-AGHTPLSIT--SDETTRKLLQYHLA  204 (235)
Q Consensus       143 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a--~~~~~~~~l~~~~~  204 (235)
                           ..|+||||+|+.+|+.+++++|+++|++++..+. .++||++++  .+.+..++++++..
T Consensus        65 -----~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          65 -----SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             -----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             -----ccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence                 8999999999999999999999999999998775 588887765  45667777777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.3e-23  Score=143.69  Aligned_cols=141  Identities=28%  Similarity=0.382  Sum_probs=126.9

Q ss_pred             cchHHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q psy5702           4 QSLGDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKDNAGYTPLHEAASHGWLDIARLLLMY   83 (235)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   83 (235)
                      .+..+.|+.++..+.+.+ .|..|+||||+|+..++.+.+..++.. .......+..+.++++.++...+.++++++...
T Consensus        12 ~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (153)
T d1awcb_          12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccc-cccccccccccccccccccccccceeeeccccc
Confidence            356789999999999877 799999999999999999999998887 555667778899999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCH
Q psy5702          84 GADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCV  163 (235)
Q Consensus        84 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  163 (235)
                      |++++.++..|.||||+|+..+                 +.+++++|+++|++++..+      ..|.||||+|+.+|+.
T Consensus        90 ~~~~~~~~~~g~T~L~~A~~~g-----------------~~~iv~~ll~~gad~~~~d------~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          90 GADVNAKDMLKMTALHWATEHN-----------------HQEVVELLIKYGADVHTQS------KFCKTAFDISIDNGNE  146 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCH
T ss_pred             CCccccccccCchHHHhhhhcc-----------------hhheeeeccccccCCcccC------CCCCCHHHHHHHcCCH
Confidence            9999999999999999977665                 5566788999999999888      8999999999999999


Q ss_pred             HHHHHH
Q psy5702         164 EMVRLL  169 (235)
Q Consensus       164 ~~v~~L  169 (235)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-23  Score=151.48  Aligned_cols=174  Identities=25%  Similarity=0.250  Sum_probs=144.5

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCChhHHHHh----------------HHHHHH
Q psy5702          60 AGYTPLHEAASHGWLDIARLLLM----YGADPSDSAIGGIRPLHDAAEKGCVEMVRLL----------------PLHDAA  119 (235)
Q Consensus        60 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l----------------~l~~a~  119 (235)
                      +|.||||+|+..|+.++++.|++    .|++++.+|..|.||||+|+..++.+++++|                +++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999988875    7999999999999999999999999999988                788888


Q ss_pred             HcCCHHHHHHHHHcCCCCcch----hh----------------------------hhhhccCCCchHHHHHhcCCHHHHH
Q psy5702         120 EKGCVEMVRLLLSYGADPLLA----SY----------------------------AVYFLSLPSRPLHDAAEKGCVEMVR  167 (235)
Q Consensus       120 ~~~~~~~~~~l~~~g~~~~~~----~~----------------------------~~~~~~~~~t~L~~A~~~~~~~~v~  167 (235)
                      ..+..++++.+..........    ..                            .......+.++|+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            888888888776543221000    00                            0011257899999999999999999


Q ss_pred             HHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCCcccccCCCcccccccccCCCCCC
Q psy5702         168 LLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAPKWDFAGPASCFDKQMVGYEPLAK  235 (235)
Q Consensus       168 ~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  235 (235)
                      +++++|.+++.+|..|.||||+|+..+..++++.++..  +.+....+..|.+++..+...|+.+++|
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS--GADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999999999998865  3344455677888999999998888776

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.4e-22  Score=142.14  Aligned_cols=129  Identities=19%  Similarity=0.116  Sum_probs=108.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCC
Q psy5702          64 PLHEAASHGWLDIARLLLMYGADPSDS------AIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADP  137 (235)
Q Consensus        64 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~  137 (235)
                      .|..|++.++...+..++..|.+++.+      +..|.||||+|+..+..              +..+++++|+++|+++
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~--------------~~~~iv~~Ll~~gadi   74 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR--------------TSLHIVDFLVQNSGNL   74 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT--------------TTHHHHHHHHHHCSCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCC--------------CCHHHHHHHHHcCCCh
Confidence            345667777777777777777776543      56789999998876433              4567889999999999


Q ss_pred             cchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCCCCCccccCCChhhhccchhhHHHHHHhhccccCCCCC
Q psy5702         138 LLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGADPLLASYAGHTPLSITSDETTRKLLQYHLADVRGHEAP  212 (235)
Q Consensus       138 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~~~~~~~~  212 (235)
                      +..+      ..|+||||+|++.|+.+++++|+++|++++.+|..|+||||+|+..+..++++.+......+..+
T Consensus        75 n~~d------~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1          75 DKQT------GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             TCCC------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             hhhh------hhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            9988      79999999999999999999999999999999999999999999999999999888776655443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.5e-22  Score=140.86  Aligned_cols=123  Identities=20%  Similarity=0.116  Sum_probs=106.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q psy5702          29 TPLHRAARLGYIDAVAYCLEKFSHGPAP------KDNAGYTPLHEAASH---GWLDIARLLLMYGADPSDSAIGGIRPLH   99 (235)
Q Consensus        29 ~~L~~A~~~~~~~~v~~li~~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~   99 (235)
                      ..|+.|++.+++..+..++.. +.+.+.      .+..|.||||+|++.   ++.+++++|++.|++++.+|..|.||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            457788999999999998887 554443      367799999999985   6789999999999999999999999999


Q ss_pred             HHHHhCChhHHHHhHHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHCCCC
Q psy5702         100 DAAEKGCVEMVRLLPLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSYGAD  175 (235)
Q Consensus       100 ~a~~~~~~~~~~~l~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~  175 (235)
                      +|+..+                 +.+++++|+++|++++..+      ..|.||||+|++.|+.+++++|++.++.
T Consensus        87 ~A~~~~-----------------~~~~v~~Ll~~gad~~~~d------~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTD-----------------NAECLKLLLRGKASIEIAN------ESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTT-----------------CHHHHHHHHHTTCCTTCCC------TTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccc-----------------cccccccccccCccccccC------CCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            987765                 5566788899999999988      8999999999999999999999997644

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=2e-25  Score=177.27  Aligned_cols=164  Identities=18%  Similarity=0.087  Sum_probs=129.3

Q ss_pred             HHHHHHHhhhhceeEeecCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHhcCCHHHHHHHHhcC
Q psy5702           7 GDTVEDVGAEVRSWVINKHHGETPLHRAARLGYIDAVAYCLEKFSHGPAPKD--NAGYTPLHEAASHGWLDIARLLLMYG   84 (235)
Q Consensus         7 ~~~~~~~~~~~~~~~~~d~~g~~~L~~A~~~~~~~~v~~li~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g   84 (235)
                      .+.++.++..+.+++.+|..|.||||+||+.|+.+++++|++. +.+++..+  ..|.||||+|+..|+.+++++|++.|
T Consensus       106 ~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~  184 (346)
T d2ajaa1         106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA  184 (346)
T ss_dssp             HHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             HHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcC
Confidence            3556678999999999999999999999999999999999998 77776654  46999999999999999999999999


Q ss_pred             CCCC---CCCCCCCcHHHHHHHhCChhHHHHh------------------------------------------------
Q psy5702          85 ADPS---DSAIGGIRPLHDAAEKGCVEMVRLL------------------------------------------------  113 (235)
Q Consensus        85 ~~~~---~~~~~g~t~l~~a~~~~~~~~~~~l------------------------------------------------  113 (235)
                      ++..   ..+..+.+|++.|+..|+.+++++|                                                
T Consensus       185 ~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  264 (346)
T d2ajaa1         185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV  264 (346)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSC
T ss_pred             CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccccc
Confidence            7653   3345567888889999999999988                                                


Q ss_pred             -----------------HHHHHHHcCCHHHHHHHHHcCCCCcchhhhhhhccCCCchHHHHHhcCCHHHHHHHHHC
Q psy5702         114 -----------------PLHDAAEKGCVEMVRLLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGCVEMVRLLLSY  172 (235)
Q Consensus       114 -----------------~l~~a~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~  172 (235)
                                       +++.+...+..+++++|++.+........ ...+..|+||||+|++.|+.+++++|++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~-~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT-ATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSC-CSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccc-ccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                             34445556778899999987754322211 11125689999999999999999999964

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.6e-20  Score=142.53  Aligned_cols=135  Identities=18%  Similarity=0.113  Sum_probs=94.4

Q ss_pred             CCCCCCC-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCChhHHHHhHHHHHHHcCC-HHHHH
Q psy5702          51 SHGPAPK-DNAGYTPLHEAASHGWLDIARLLLMYGADPSDSAIGGIRPLHDAAEKGCVEMVRLLPLHDAAEKGC-VEMVR  128 (235)
Q Consensus        51 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~l~~a~~~~~-~~~~~  128 (235)
                      +.++|.. |..|.||||+|+..|+.+++++|++.|++++.+|..|.||||.|+..++..-           .+. .++++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~-----------~~~~~~ll~  164 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD-----------SGTFEALLD  164 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH-----------TTCHHHHHH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchh-----------hhhHHHHHH
Confidence            4456654 8999999999999999999999999999999999999999999998764210           111 12233


Q ss_pred             HHHHcCCCCcchhhhhhhccCCCchHHHHHhcCC----HH--------HHHHHHHCCC----------------------
Q psy5702         129 LLLSYGADPLLASYAVYFLSLPSRPLHDAAEKGC----VE--------MVRLLLSYGA----------------------  174 (235)
Q Consensus       129 ~l~~~g~~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~--------~v~~Ll~~ga----------------------  174 (235)
                      ++..   .++..+      ..|+||||.++..+.    ..        ++.++++.+.                      
T Consensus       165 ~l~~---~~~~~d------~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T d1sw6a_         165 YLYP---CLILED------SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  235 (301)
T ss_dssp             HHGG---GGGEEC------TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHhh---hhhhcc------cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcch
Confidence            3322   122233      456677776654332    11        2223333221                      


Q ss_pred             ---------------CCCCccccCCChhhhccchhhHHHHHHhhcc
Q psy5702         175 ---------------DPLLASYAGHTPLSITSDETTRKLLQYHLAD  205 (235)
Q Consensus       175 ---------------~~~~~~~~g~t~l~~a~~~~~~~~l~~~~~~  205 (235)
                                     .++.+|..|+||||+|+..+..++++.++..
T Consensus       236 ~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~  281 (301)
T d1sw6a_         236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY  281 (301)
T ss_dssp             CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence                           2688899999999999999988888888765