Psyllid ID: psy5721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWYRL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHHHccEEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEEEEccEEEccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHcccccHHHccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccEEEEEEEc
Coil and Loop (DISEMBL)
MNIFACGALRNVISALAdgnkthipyrdsKLTRILQEslggnartTIIIccspasfnesetkstLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRwrngetvkedeqvnladpvdmaasiaptpesapasilpaipgsglmlgslsnEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFfrqsspkgtllynhyllgwpnqservSLWYRL
Flexible Loop (DISEMBL)
MNIFACGALRNVISALadgnkthipyrdskLTRILQESLGGNARTTIIICCspasfnesetkstldfgrraktiknvvtvneeltaeewkrryekekekssrykgkleklelelsrwrngetvkedeqvnlaDPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQqldekdeeiNQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTrltqenesaKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHyllgwpnqservslwyRL
Low Complexity Region (SEG)
MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAeewkrryekekekssrykgkleklelelSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNeerqkleeererlyqqldeKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWYRL
Disordered region (IsUnstruct)
**IFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASF********LDFGRRAKTIKNVVTVNEEL************************************************************************************************************************************************************************RTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWY**
Disordered Region (DISOPRED)
*NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEK******************************************************************************************************************************************************************************************VSLWYRL
Disordered Region (DISEMBL)
MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASF********LDFGRRAKTIKNVVTVNEELTAEEWKR************KGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR**************VLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWYRL
Disordered Region (DISPRO)
*NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN***********************************************SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWYRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWYRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
P17210	975	Kinesin heavy chain OS=Dr	yes	N/A	0.831	0.247	0.709	3e-94
P21613	967	Kinesin heavy chain OS=Do	N/A	N/A	0.810	0.243	0.646	3e-86
O60282	957	Kinesin heavy chain isofo	yes	N/A	0.813	0.246	0.605	1e-71
P28738	956	Kinesin heavy chain isofo	yes	N/A	0.803	0.243	0.608	2e-69
Q61768	963	Kinesin-1 heavy chain OS=	no	N/A	0.817	0.246	0.594	3e-68
Q2PQA9	963	Kinesin-1 heavy chain OS=	no	N/A	0.817	0.246	0.594	4e-68
P33176	963	Kinesin-1 heavy chain OS=	no	N/A	0.8	0.240	0.594	6e-67
Q6QLM7	1027	Kinesin heavy chain isofo	no	N/A	0.813	0.229	0.589	7e-67
P33175	1027	Kinesin heavy chain isofo	no	N/A	0.813	0.229	0.585	2e-66
P35978	1031	Kinesin heavy chain OS=St	yes	N/A	0.789	0.222	0.617	3e-66

>sp|P17210|KINH_DROME Kinesin heavy chain OS=Drosophila melanogaster GN=Khc PE=1 SV=2

 Score =  344 bits (883), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 206/255 (80%), Gaps = 14/255 (5%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKST
Sbjct: 264 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKST 323

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFGRRAKT+KNVV VNEELTAEEWKRRYEKEKEK++R KGK+EKLE+EL+RWR GETVK
Sbjct: 324 LDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGKVEKLEIELARWRAGETVK 383

Query: 125 EDEQVNLADPVDMAASIAPTP---------ESAPASILPAIPGSGLMLGSLSNEERQKLE 175
            +EQ+N+ D ++     A TP          +A A++         M  S++  E+ +L 
Sbjct: 384 AEEQINMEDLME-----ASTPNLEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLA 438

Query: 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235
            E ERLYQQLD+KDEEINQQSQYAE+LKEQ+MEQEELI  ARR+YE LQ EM R+ QENE
Sbjct: 439 TECERLYQQLDDKDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQSEMARIQQENE 498

Query: 236 SAKEEVKEVLQALEE 250
           SAKEEVKEVLQALEE
Sbjct: 499 SAKEEVKEVLQALEE 513

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Milt and Miro form an essential protein complex that links Khc to mitochondria for light chain-independent, anterograde transport of mitochondria.
Drosophila melanogaster (taxid: 7227)

>sp|P21613|KINH_DORPE Kinesin heavy chain OS=Doryteuthis pealeii PE=2 SV=1

 Score =  318 bits (815), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 197/246 (80%), Gaps = 11/246 (4%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNK+H+PYRDSKLTRILQESLGGNARTT++ICCSPAS+NESETKST
Sbjct: 257 SLSALGNVISALADGNKSHVPYRDSKLTRILQESLGGNARTTMVICCSPASYNESETKST 316

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKNVV+VNEELTA+EWKRRYEKEKE+ ++ K  + KLE EL RWR G+ V 
Sbjct: 317 LLFGQRAKTIKNVVSVNEELTADEWKRRYEKEKERVTKLKATMAKLEAELQRWRTGQAVS 376

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
            +EQV+L + V         P  +PA+   ++ G   ++ S++  +R +LEEER +LYQQ
Sbjct: 377 VEEQVDLKEDV---------PAESPATSTTSLAGG--LIASMNEGDRTQLEEERLKLYQQ 425

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LD+KD+EIN QSQ  EKLKEQ+MEQE+LI  +RRDYE LQ +M+R+  +NESAK+EVKEV
Sbjct: 426 LDDKDDEINNQSQLIEKLKEQMMEQEDLIAQSRRDYENLQQDMSRIQADNESAKDEVKEV 485

Query: 245 LQALEE 250
           LQALEE
Sbjct: 486 LQALEE 491

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Loligo pealeii (taxid: 1051067)

>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/246 (60%), Positives = 191/246 (77%), Gaps = 10/246 (4%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKST
Sbjct: 258 SLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKST 317

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKN V+VN ELTAEEWK++YEKEKEK+   K  ++ LE+EL+RWRNGE V 
Sbjct: 318 LMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVP 377

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
           EDEQ++  D  ++           P    P I     ++  +S EE++K +EE   LY+Q
Sbjct: 378 EDEQISAKDQKNL----------EPCDNTPIIDNIAPVVAGISTEEKEKYDEEISSLYRQ 427

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LD+KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEV
Sbjct: 428 LDDKDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEV 487

Query: 245 LQALEE 250
           LQALEE
Sbjct: 488 LQALEE 493

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Homo sapiens (taxid: 9606)

>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C OS=Mus musculus GN=Kif5c PE=1 SV=3

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 192/248 (77%), Gaps = 15/248 (6%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKST
Sbjct: 258 SLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKST 317

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKN V+VN ELTAEEWK++YEKEKEK+   K  L+ LE+EL+RWRNGE V 
Sbjct: 318 LMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVLQHLEMELNRWRNGEAVP 377

Query: 125 EDEQVNLADPVDMAASIAPTPESAPA--SILPAIPGSGLMLGSLSNEERQKLEEERERLY 182
           EDEQ++  D      S+ P  ++ P   +I P + G           E++K +EE   LY
Sbjct: 378 EDEQISAKDQ----KSLEPC-DNTPIIDNITPVVDGISA--------EKEKYDEEITSLY 424

Query: 183 QQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242
           +QLD+KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVK
Sbjct: 425 RQLDDKDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVK 484

Query: 243 EVLQALEE 250
           EVLQALEE
Sbjct: 485 EVLQALEE 492

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Mus musculus (taxid: 10090)

>sp|Q61768|KINH_MOUSE Kinesin-1 heavy chain OS=Mus musculus GN=Kif5b PE=1 SV=3

 Score =  258 bits (659), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 186/244 (76%), Gaps = 7/244 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKN V VN ELTAE+WK++YEKEKEK+   +  ++ LE EL+RWRNGETV  DE
Sbjct: 319 GQRAKTIKNTVCVNVELTAEQWKKKYEKEKEKNKTLRNTIQWLENELNRWRNGETVPIDE 378

Query: 128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGL-MLGSLSNEERQKLEEERERLYQQLD 186
           Q +        A++         +I    P + + M GS ++ ER+K EEE  +LY+QLD
Sbjct: 379 QFD-----KEKANLEAFTADKDIAITSDKPAAAVGMAGSFTDAERRKCEEELAKLYKQLD 433

Query: 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246
           +KDEEINQQSQ  EKLK Q+++QEEL+ + RRD + +Q E+ RL  EN+++KEEVKEVLQ
Sbjct: 434 DKDEEINQQSQLVEKLKTQMLDQEELLASTRRDQDNMQAELNRLQAENDASKEEVKEVLQ 493

Query: 247 ALEE 250
           ALEE
Sbjct: 494 ALEE 497

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes. May be involved in the mechanisms of growth arrest induced by exposure to DNA-damaging drugs or by cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q2PQA9|KINH_RAT Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5b PE=1 SV=1

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/244 (59%), Positives = 186/244 (76%), Gaps = 7/244 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKN V VN ELTAE+WK++YEKEKEK+   +  ++ LE EL+RWRNGETV  DE
Sbjct: 319 GQRAKTIKNTVCVNVELTAEQWKKKYEKEKEKNKTLRNTIQWLENELNRWRNGETVPIDE 378

Query: 128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGL-MLGSLSNEERQKLEEERERLYQQLD 186
           Q +        A++         +I    P + + M GS ++ ER+K EEE  +LY+QLD
Sbjct: 379 QFD-----KEKANLEAFTADKDVAITNDKPAAAIGMAGSFTDAERRKCEEEIAKLYKQLD 433

Query: 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246
           +KDEEINQQSQ  EKLK Q+++QEEL+ + RRD + +Q E+ RL  EN+++KEEVKEVLQ
Sbjct: 434 DKDEEINQQSQLVEKLKTQMLDQEELLASTRRDQDNMQAELNRLQAENDASKEEVKEVLQ 493

Query: 247 ALEE 250
           ALEE
Sbjct: 494 ALEE 497

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|P33176|KINH_HUMAN Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1

 Score =  254 bits (648), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 188/249 (75%), Gaps = 17/249 (6%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKN V VN ELTAE+WK++YEKEKEK+   +  ++ LE EL+RWRNGETV  DE
Sbjct: 319 GQRAKTIKNTVCVNVELTAEQWKKKYEKEKEKNKILRNTIQWLENELNRWRNGETVPIDE 378

Query: 128 Q-----VNL-ADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL 181
           Q      NL A  VD   ++       PA+ +  I       G+ ++ ER+K EEE  +L
Sbjct: 379 QFDKEKANLEAFTVDKDITLT---NDKPATAIGVI-------GNFTDAERRKCEEEIAKL 428

Query: 182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241
           Y+QLD+KDEEINQQSQ  EKLK Q+++QEEL+ + RRD + +Q E+ RL  EN+++KEEV
Sbjct: 429 YKQLDDKDEEINQQSQLVEKLKTQMLDQEELLASTRRDQDNMQAELNRLQAENDASKEEV 488

Query: 242 KEVLQALEE 250
           KEVLQALEE
Sbjct: 489 KEVLQALEE 497

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q6QLM7|KIF5A_RAT Kinesin heavy chain isoform 5A OS=Rattus norvegicus GN=Kif5a PE=1 SV=1

 Score =  254 bits (648), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 145/246 (58%), Positives = 185/246 (75%), Gaps = 10/246 (4%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALA+G K+++PYRDSK+TRILQ+SLGGN RTT+ ICCSP+S+N++ETKST
Sbjct: 258 SLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKST 317

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKN  +VN ELTAE+WK++YEKEKEK+   K  + KLE ELSRWRNGE V 
Sbjct: 318 LMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAELSRWRNGENVP 377

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
           E E++   D    A     TP +  +SI+  I          + EERQK EEE  RLY+Q
Sbjct: 378 ETERLAGEDSALAAEICEETPVNDNSSIVVRI----------APEERQKYEEEIRRLYKQ 427

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LD+KD+EINQQSQ  EKLK+Q+++QEEL+ + R D E++Q E++ L  EN++AKEEVKEV
Sbjct: 428 LDDKDDEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKEEVKEV 487

Query: 245 LQALEE 250
           LQALEE
Sbjct: 488 LQALEE 493

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Rattus norvegicus (taxid: 10116)

>sp|P33175|KIF5A_MOUSE Kinesin heavy chain isoform 5A OS=Mus musculus GN=Kif5a PE=1 SV=3

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 185/246 (75%), Gaps = 10/246 (4%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALA+G K+++PYRDSK+TRILQ+SLGGN RTT+ ICCSP+S+N++ETKST
Sbjct: 258 SLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKST 317

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKN  +VN ELTAE+WK++YEKEKEK+   K  + KLE ELSRWRNGE V 
Sbjct: 318 LMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAELSRWRNGENVP 377

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
           E E++   D    A     TP +  +SI+  I          + EERQK EEE  RLY+Q
Sbjct: 378 ETERLAGEDSALGAELCEETPVNDNSSIVVRI----------APEERQKYEEEIRRLYKQ 427

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LD+KD+EINQQSQ  EKLK+Q+++QEEL+ + R D E++Q E++ L  EN++AK+EVKEV
Sbjct: 428 LDDKDDEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEVKEV 487

Query: 245 LQALEE 250
           LQALEE
Sbjct: 488 LQALEE 493

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Mus musculus (taxid: 10090)

>sp|P35978|KINH_STRPU Kinesin heavy chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score =  251 bits (642), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 180/246 (73%), Gaps = 17/246 (6%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADG K+HIPYRDSK+TRILQESLGGNARTTI+ICCSP+SFNESE+KST
Sbjct: 256 SLSALGNVISALADGKKSHIPYRDSKMTRILQESLGGNARTTIVICCSPSSFNESESKST 315

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L FG+RAKTIKN VTVN ELTAEEW+ RYEKEKEK+ R K +L  LE EL RWR GE+V 
Sbjct: 316 LMFGQRAKTIKNTVTVNMELTAEEWRNRYEKEKEKNGRLKAQLLILENELQRWRAGESVP 375

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
             EQ N  D                  IL  +     M   +S EE+ K EEE+ +LY+Q
Sbjct: 376 VKEQGNKND-----------------EILKEMMKPKQMTVHVSEEEKNKWEEEKVKLYEQ 418

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LDEKD EI+ QS+  EKLK+Q++EQEEL+++ +RDYE LQ +M RL  EN +AKEE KEV
Sbjct: 419 LDEKDSEIDNQSRLTEKLKQQMLEQEELLSSMQRDYELLQSQMGRLEAENAAAKEEAKEV 478

Query: 245 LQALEE 250
           LQALEE
Sbjct: 479 LQALEE 484

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Strongylocentrotus purpuratus (taxid: 7668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
307186188	969	Kinesin heavy chain [Camponotus floridan	0.848	0.253	0.805	1e-108
345485732	990	PREDICTED: kinesin heavy chain [Nasonia	0.837	0.245	0.796	1e-107
332017463	969	Kinesin heavy chain [Acromyrmex echinati	0.848	0.253	0.805	1e-107
322799916	972	hypothetical protein SINV_14443 [Solenop	0.831	0.247	0.784	1e-106
242023696	952	Kinesin heavy chain, putative [Pediculus	0.841	0.256	0.788	1e-105
380029607	989	PREDICTED: kinesin heavy chain-like [Api	0.820	0.240	0.783	1e-102
66520179	988	PREDICTED: kinesin heavy chain isoform 1	0.820	0.240	0.783	1e-102
383853868	970	PREDICTED: kinesin heavy chain-like [Meg	0.831	0.248	0.769	1e-102
340721138	971	PREDICTED: kinesin heavy chain-like [Bom	0.837	0.250	0.786	1e-101
328712810	979	PREDICTED: kinesin heavy chain-like [Acy	0.820	0.243	0.760	1e-101

>gi|307186188|gb|EFN71894.1| Kinesin heavy chain [Camponotus floridanus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/247 (80%), Positives = 216/247 (87%), Gaps = 1/247 (0%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++RYKGK++KLE ELSRWR GETVK
Sbjct: 328 LDFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARYKGKVDKLEAELSRWRQGETVK 387

Query: 125 EDEQVNLADPVDMAASI-APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQ 183
            +EQV+L +  D+   I  P       S +PA PG GLM+GSLSNEERQKLEEERERLYQ
Sbjct: 388 PEEQVSLVEGPDVTTPINVPVEGKLDDSPMPATPGGGLMIGSLSNEERQKLEEERERLYQ 447

Query: 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
           QLD+KDEEINQQSQY EKLKEQ+ EQEELI +ARRDYEQLQ EM R+ QENESAKEEVKE
Sbjct: 448 QLDDKDEEINQQSQYVEKLKEQMEEQEELIASARRDYEQLQQEMNRIQQENESAKEEVKE 507

Query: 244 VLQALEE 250
           VLQALEE
Sbjct: 508 VLQALEE 514

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485732|ref|XP_001606707.2| PREDICTED: kinesin heavy chain [Nasonia vitripennis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/250 (79%), Positives = 216/250 (86%), Gaps = 7/250 (2%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++R +GK+EKLE ELSRWR GETVK
Sbjct: 328 LDFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARLRGKVEKLESELSRWRQGETVK 387

Query: 125 EDEQVNLADPVDMAASIAPTPE----SAPASILPAIPGSGLMLGSLSNEERQKLEEERER 180
            +EQV+L D  D+   +AP  E      P   +PA PG GLM GSLSNEERQKLEEERER
Sbjct: 388 PEEQVSLQDGPDVTTPVAPVVEVKLDDGP---IPATPGGGLMAGSLSNEERQKLEEERER 444

Query: 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE 240
           LYQQLD+KDEEINQQSQ+ EKLKEQ+ EQEELI +ARRDYEQLQ EM R+ QENESAKEE
Sbjct: 445 LYQQLDDKDEEINQQSQFVEKLKEQMEEQEELIASARRDYEQLQQEMNRIQQENESAKEE 504

Query: 241 VKEVLQALEE 250
           VKEVLQALEE
Sbjct: 505 VKEVLQALEE 514

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017463|gb|EGI58186.1| Kinesin heavy chain [Acromyrmex echinatior]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/247 (80%), Positives = 216/247 (87%), Gaps = 1/247 (0%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK +R+KGK++KLE ELSRWR GETVK
Sbjct: 328 LDFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKVARWKGKVDKLEAELSRWRQGETVK 387

Query: 125 EDEQVNLADPVDMAASIAPTPESA-PASILPAIPGSGLMLGSLSNEERQKLEEERERLYQ 183
            +EQVNL +  D+   I  + E     S +PA PG GLM+GSLSNEERQKLEEERERLYQ
Sbjct: 388 PEEQVNLIEGPDVTTPINVSIEGKLDDSPMPATPGGGLMIGSLSNEERQKLEEERERLYQ 447

Query: 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
           QLD+KDEEINQQSQY EKLKEQ+ EQEELI +ARRDYEQLQ EM R+ QENESAKEEVKE
Sbjct: 448 QLDDKDEEINQQSQYVEKLKEQMEEQEELIASARRDYEQLQQEMNRIQQENESAKEEVKE 507

Query: 244 VLQALEE 250
           VLQALEE
Sbjct: 508 VLQALEE 514

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799916|gb|EFZ21057.1| hypothetical protein SINV_14443 [Solenopsis invicta]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/255 (78%), Positives = 218/255 (85%), Gaps = 14/255 (5%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK +R+KGK++KLE ELSRWR GETVK
Sbjct: 328 LDFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKVARWKGKVDKLEAELSRWRQGETVK 387

Query: 125 EDEQVNLADPVDMAASIAPTPESAPA---------SILPAIPGSGLMLGSLSNEERQKLE 175
            +EQV+L +  D+      TP +AP          S +PA PG GLM+GSLSNEERQKLE
Sbjct: 388 PEEQVSLIEGPDVT-----TPITAPIEAKLDDKINSPMPATPGGGLMIGSLSNEERQKLE 442

Query: 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235
           EERERLYQQLD+KDEEINQQSQY EKLKEQ+ EQEELI +ARRDYEQLQ EM R+ QENE
Sbjct: 443 EERERLYQQLDDKDEEINQQSQYVEKLKEQMDEQEELIASARRDYEQLQQEMNRIQQENE 502

Query: 236 SAKEEVKEVLQALEE 250
           SAKEEVKEVLQALEE
Sbjct: 503 SAKEEVKEVLQALEE 517

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023696|ref|XP_002432267.1| Kinesin heavy chain, putative [Pediculus humanus corporis] gi|212517676|gb|EEB19529.1| Kinesin heavy chain, putative [Pediculus humanus corporis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 217/246 (88%), Gaps = 2/246 (0%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNE+ETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNEAETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           L+FG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK+++++ K EKLELELSRWR GETVK
Sbjct: 328 LEFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAAKWRAKCEKLELELSRWRAGETVK 387

Query: 125 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 184
            +EQVNL +P+D    ++  P+      +PA P SGLM+GSLSNEERQKLEEERERLYQQ
Sbjct: 388 PEEQVNLQEPLDSTTPVSALPDGKKGP-MPATP-SGLMIGSLSNEERQKLEEERERLYQQ 445

Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244
           LD+KDEEINQ SQY EKLKEQ++EQEELIT+ RRDYE LQ EMTR+ QENESAKEEVKEV
Sbjct: 446 LDDKDEEINQTSQYVEKLKEQMLEQEELITSTRRDYELLQQEMTRIQQENESAKEEVKEV 505

Query: 245 LQALEE 250
           LQALEE
Sbjct: 506 LQALEE 511

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029607|ref|XP_003698460.1| PREDICTED: kinesin heavy chain-like [Apis florea]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/249 (78%), Positives = 211/249 (84%), Gaps = 11/249 (4%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF
Sbjct: 271 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 330

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++R KGK+EKLE ELSRWR GETVK +E
Sbjct: 331 GKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARLKGKVEKLEAELSRWRQGETVKPEE 390

Query: 128 QVNLAD------PVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL 181
           QVNL +      P++M  SI    +  P   +PA PG  LM GSLSNEERQKLEEERERL
Sbjct: 391 QVNLVEGPDVTTPINM--SIEGKLDDGP---MPATPGGNLMAGSLSNEERQKLEEERERL 445

Query: 182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241
           YQQLD+KDEEINQQSQY E LKEQI EQ ELI TARR+YE+LQ E+ R  QE+E AKEEV
Sbjct: 446 YQQLDDKDEEINQQSQYVENLKEQIHEQAELIATARREYEKLQQEVNRTQQEHERAKEEV 505

Query: 242 KEVLQALEE 250
           KEVLQALEE
Sbjct: 506 KEVLQALEE 514

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66520179|ref|XP_395236.2| PREDICTED: kinesin heavy chain isoform 1 [Apis mellifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/249 (78%), Positives = 211/249 (84%), Gaps = 11/249 (4%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF
Sbjct: 271 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 330

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++R KGK+EKLE ELSRWR GETVK +E
Sbjct: 331 GKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARLKGKVEKLEAELSRWRQGETVKPEE 390

Query: 128 QVNLAD------PVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL 181
           QVNL +      P++M  SI    +  P   +PA PG  LM GSLSNEERQKLEEERERL
Sbjct: 391 QVNLVEGPDVTTPINM--SIEGKLDDGP---MPATPGGNLMAGSLSNEERQKLEEERERL 445

Query: 182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241
           YQQLD+KDEEINQQSQY E LKEQI EQ ELI TARR+YE+LQ E+ R  QE+E AKEEV
Sbjct: 446 YQQLDDKDEEINQQSQYVENLKEQIHEQAELIATARREYEKLQQEVNRTQQEHERAKEEV 505

Query: 242 KEVLQALEE 250
           KEVLQALEE
Sbjct: 506 KEVLQALEE 514

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853868|ref|XP_003702444.1| PREDICTED: kinesin heavy chain-like [Megachile rotundata]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/252 (76%), Positives = 214/252 (84%), Gaps = 11/252 (4%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 268 SLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 327

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFG+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++R KGK+EKLE ELSRWR GETVK
Sbjct: 328 LDFGKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARLKGKVEKLEAELSRWRQGETVK 387

Query: 125 EDEQVNLAD------PVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEER 178
            +EQV+L +      P++M  SI    +  P   +PA PG  L+ GSLSNEERQKLEEER
Sbjct: 388 PEEQVSLVEGPDVTTPINM--SIEGKLDDGP---MPATPGGSLLAGSLSNEERQKLEEER 442

Query: 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238
           ERLYQQLD+KDEEINQQSQY E LKEQI EQ ELI TARR+YE+LQ EM R+ QE+E+AK
Sbjct: 443 ERLYQQLDDKDEEINQQSQYVENLKEQIDEQAELIATARREYEKLQQEMNRIQQEHENAK 502

Query: 239 EEVKEVLQALEE 250
           EEVKEVLQALEE
Sbjct: 503 EEVKEVLQALEE 514

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721138|ref|XP_003398982.1| PREDICTED: kinesin heavy chain-like [Bombus terrestris] gi|350399421|ref|XP_003485517.1| PREDICTED: kinesin heavy chain-like [Bombus impatiens]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/244 (78%), Positives = 207/244 (84%), Gaps = 1/244 (0%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF
Sbjct: 271 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 330

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE 127
           G+RAKTIKNVV VNEELTAEEWKRRYE+EKEK++R KGK+EKLE ELSRWR GETVK +E
Sbjct: 331 GKRAKTIKNVVCVNEELTAEEWKRRYEREKEKAARLKGKVEKLEAELSRWRQGETVKLEE 390

Query: 128 QVNLADPVDMAASIAPTPESA-PASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLD 186
           Q NL +  D+   I  + E       +PA PG  LM GSLSNEERQKLEEERERLYQQLD
Sbjct: 391 QFNLVEASDVTTPINMSIEGKLDDGPMPATPGGNLMAGSLSNEERQKLEEERERLYQQLD 450

Query: 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246
           +KDEEINQQSQY E LKEQI EQ ELI TARR+YE+LQ E+ R  QE+E AKEEVKEVLQ
Sbjct: 451 DKDEEINQQSQYVENLKEQIHEQAELIATARREYEKLQQEVNRTQQEHERAKEEVKEVLQ 510

Query: 247 ALEE 250
           ALEE
Sbjct: 511 ALEE 514

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712810|ref|XP_001944740.2| PREDICTED: kinesin heavy chain-like [Acyrthosiphon pisum]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 212/255 (83%), Gaps = 17/255 (6%)

Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL NVISALA+  KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST
Sbjct: 264 SLSALGNVISALAEDKKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 323

Query: 65  LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124
           LDFGRRAKTIKNV+TVNEELTAEEWKRRYEKEKEK +RYK K +KL+ EL+RWR GETVK
Sbjct: 324 LDFGRRAKTIKNVITVNEELTAEEWKRRYEKEKEKCTRYKAKCDKLQTELNRWRCGETVK 383

Query: 125 EDEQVNLADP---------VDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLE 175
           EDEQVNL +P         VD+   +   P       +PAIPG G+M  S+S EERQKLE
Sbjct: 384 EDEQVNLQEPMEASTPNVQVDIKKELVVGP-------VPAIPG-GVMTESMSTEERQKLE 435

Query: 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235
           EERE LYQQLD+KDEEINQQSQ  EKLKEQIMEQEEL+T+ +RDYEQLQ EM R+TQENE
Sbjct: 436 EEREALYQQLDDKDEEINQQSQDIEKLKEQIMEQEELLTSTQRDYEQLQQEMHRITQENE 495

Query: 236 SAKEEVKEVLQALEE 250
           SAKEEVKEVLQALEE
Sbjct: 496 SAKEEVKEVLQALEE 510

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
FB|FBgn0001308	975	Khc "Kinesin heavy chain" [Dro	0.837	0.249	0.582	2.6e-64
UNIPROTKB|F1NE00	933	KIF5C "Uncharacterized protein	0.803	0.249	0.514	6.6e-55
UNIPROTKB|F1N945	995	KIF5C "Uncharacterized protein	0.803	0.234	0.514	9.2e-55
UNIPROTKB|E9PET8	862	KIF5C "Kinesin heavy chain iso	0.803	0.270	0.506	1.3e-54
UNIPROTKB|E2RDZ9	957	KIF5C "Uncharacterized protein	0.803	0.243	0.518	1.6e-54
UNIPROTKB|O60282	957	KIF5C "Kinesin heavy chain iso	0.803	0.243	0.506	2.7e-54
UNIPROTKB|F6RAG5	956	KIF5C "Uncharacterized protein	0.803	0.243	0.506	9.3e-54
UNIPROTKB|I3LUB8	946	KIF5C "Uncharacterized protein	0.803	0.246	0.510	1.1e-53
ZFIN|ZDB-GENE-070629-2	968	kif5ba "kinesin family member	0.834	0.25	0.495	9e-52
MGI|MGI:1098268	963	Kif5b "kinesin family member 5	0.820	0.247	0.510	8.3e-51

FB|FBgn0001308 Khc "Kinesin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 659 (237.0 bits), Expect = 2.6e-64, P = 2.6e-64
 Identities = 144/247 (58%), Positives = 162/247 (65%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKSTLDF
Sbjct:   267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             GRRAKT+KNVV VNEELTA                            +RWR GETVK +E
Sbjct:   327 GRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGKVEKLEIELARWRAGETVKAEE 386

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXX----XX 183
             Q+N+ D ++ +        +  A+   A+      L ++S                    
Sbjct:   387 QINMEDLMEASTPNLEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLATECERLYQ 446

Query:   184 XXXXKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
                 KDEEINQQSQYAE+LKEQ+MEQEELI  ARR+YE LQ EM R+ QENESAKEEVKE
Sbjct:   447 QLDDKDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQSEMARIQQENESAKEEVKE 506

Query:   244 VLQALEE 250
             VLQALEE
Sbjct:   507 VLQALEE 513

GO:0005737 "cytoplasm" evidence=IDA

GO:0003774 "motor activity" evidence=NAS

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0005871 "kinesin complex" evidence=ISS;NAS;IDA

GO:0007018 "microtubule-based movement" evidence=ISS;IDA;NAS

GO:0003777 "microtubule motor activity" evidence=ISS;IDA;NAS

GO:0035371 "microtubule plus end" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0019227 "neuronal action potential propagation" evidence=NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP;TAS

GO:0008574 "plus-end-directed microtubule motor activity" evidence=TAS

GO:0007315 "pole plasm assembly" evidence=IMP

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=NAS

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=TAS

GO:0008088 "axon cargo transport" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0001754 "eye photoreceptor cell differentiation" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0048311 "mitochondrion distribution" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007409 "axonogenesis" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010970 "microtubule-based transport" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0030011 "maintenance of cell polarity" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0048741 "skeletal muscle fiber development" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0048312 "intracellular distribution of mitochondria" evidence=IMP

UNIPROTKB|F1NE00 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 573 (206.8 bits), Expect = 6.6e-55, P = 6.6e-55
 Identities = 125/243 (51%), Positives = 154/243 (63%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   255 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSIFNEAETKSTLMF 314

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   315 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKDKNKSLKNVIQHLELELNRWRNGEAVPEDE 374

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D  ++           P    P I     ++ S+S                    
Sbjct:   375 QISAKDQKNLE----------PCDNTPIIDNITPVVASISTEEKQKYDEEIASLYRQLDD 424

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++QEEL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   425 KDDEINQQSQLAEKLKQQMLDQEELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 484

Query:   248 LEE 250
             LEE
Sbjct:   485 LEE 487

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1N945 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 573 (206.8 bits), Expect = 9.2e-55, P = 9.2e-55
 Identities = 125/243 (51%), Positives = 154/243 (63%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   299 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSIFNEAETKSTLMF 358

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   359 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKDKNKSLKNVIQHLELELNRWRNGEAVPEDE 418

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D  ++           P    P I     ++ S+S                    
Sbjct:   419 QISAKDQKNLE----------PCDNTPIIDNITPVVASISTEEKQKYDEEIASLYRQLDD 468

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++QEEL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   469 KDDEINQQSQLAEKLKQQMLDQEELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 528

Query:   248 LEE 250
             LEE
Sbjct:   529 LEE 531

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

UNIPROTKB|E9PET8 KIF5C "Kinesin heavy chain isoform 5C" [Homo sapiens (taxid:9606)]

 Score = 568 (205.0 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 123/243 (50%), Positives = 153/243 (62%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   166 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 225

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   226 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVPEDE 285

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D  ++           P    P I     ++  +S                    
Sbjct:   286 QISAKDQKNLE----------PCDNTPIIDNIAPVVAGISTEEKEKYDEEISSLYRQLDD 335

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   336 KDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 395

Query:   248 LEE 250
             LEE
Sbjct:   396 LEE 398

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|E2RDZ9 KIF5C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 570 (205.7 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 126/243 (51%), Positives = 153/243 (62%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   261 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 320

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   321 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVPEDE 380

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q+N  D          T E  P    P I     ++  +S                    
Sbjct:   381 QINAKDQ--------KTLE--PCDNTPIIDNIAPVVAGISAEEKEKYDEEISSLYRQLDD 430

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   431 KDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 490

Query:   248 LEE 250
             LEE
Sbjct:   491 LEE 493

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|O60282 KIF5C "Kinesin heavy chain isoform 5C" [Homo sapiens (taxid:9606)]

 Score = 568 (205.0 bits), Expect = 2.7e-54, P = 2.7e-54
 Identities = 123/243 (50%), Positives = 153/243 (62%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   261 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 320

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   321 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVPEDE 380

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D  ++           P    P I     ++  +S                    
Sbjct:   381 QISAKDQKNLE----------PCDNTPIIDNIAPVVAGISTEEKEKYDEEISSLYRQLDD 430

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   431 KDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 490

Query:   248 LEE 250
             LEE
Sbjct:   491 LEE 493

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0051028 "mRNA transport" evidence=ISS

GO:0005871 "kinesin complex" evidence=TAS

GO:0006996 "organelle organization" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F6RAG5 KIF5C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 563 (203.2 bits), Expect = 9.3e-54, P = 9.3e-54
 Identities = 123/243 (50%), Positives = 154/243 (63%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVI+ALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   261 ALGNVIAALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 320

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   321 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVPEDE 380

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D      S+ P   +      P I     ++  +S                    
Sbjct:   381 QISAKDQ----KSLEPCDNT------PIIDNIAPVVAGISAEEKEKYDEEISSLYRQLDD 430

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   431 KDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 490

Query:   248 LEE 250
             LEE
Sbjct:   491 LEE 493

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|I3LUB8 KIF5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 124/243 (51%), Positives = 153/243 (62%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct:   250 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 309

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V+VN ELTA                            +RWRNGE V EDE
Sbjct:   310 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAVPEDE 369

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q++  D          T E  P    P I     ++  ++                    
Sbjct:   370 QISAKDQ--------KTLE--PCDNTPIIDNIAPVVAGITAEEKEKYDEEISSLYRQLDD 419

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KD+EINQQSQ AEKLK+Q+++Q+EL+ + RRDYE++Q E+TRL  ENE+AK+EVKEVLQA
Sbjct:   420 KDDEINQQSQLAEKLKQQMLDQDELLASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQA 479

Query:   248 LEE 250
             LEE
Sbjct:   480 LEE 482

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-070629-2 kif5ba "kinesin family member 5B, a" [Danio rerio (taxid:7955)]

 Score = 545 (196.9 bits), Expect = 9.0e-52, P = 9.0e-52
 Identities = 121/244 (49%), Positives = 156/244 (63%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             +L NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP++FNE+ETKSTL F
Sbjct:   260 SLGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSAFNEAETKSTLMF 318

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V VN ELTA                            +RWRNGETV  +E
Sbjct:   319 GQRAKTIKNTVCVNVELTAEQWKKKYEKERERNKSLRNTITWLENELNRWRNGETVPAEE 378

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGS-LSNXXXXXXXXXXXXXXXXXX 186
             Q +         ++  T  +   +  P++P    MLG+ L+                   
Sbjct:   379 QYDKEKVNAEVLALDNTINNDKFASTPSMPPMPGMLGTRLTGVEKDKCEVELGKLYKQLD 438

Query:   187 XKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246
              KDEEINQQSQ  EKLK+Q+++QEEL+ ++RRD++ LQ E+TRL  ENE++KEEVKEVLQ
Sbjct:   439 DKDEEINQQSQLVEKLKQQMLDQEELLASSRRDHDNLQAELTRLQLENEASKEEVKEVLQ 498

Query:   247 ALEE 250
             ALEE
Sbjct:   499 ALEE 502

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1098268 Kif5b "kinesin family member 5B" [Mus musculus (taxid:10090)]

 Score = 536 (193.7 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 124/243 (51%), Positives = 153/243 (62%)

Query:     8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
             AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct:   260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318

Query:    68 GRRAKTIKNVVTVNEELTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRWRNGETVKEDE 127
             G+RAKTIKN V VN ELTA                            +RWRNGETV  DE
Sbjct:   319 GQRAKTIKNTVCVNVELTAEQWKKKYEKEKEKNKTLRNTIQWLENELNRWRNGETVPIDE 378

Query:   128 QVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXX 187
             Q +  +  ++ A  A   + A  S  PA    G M GS ++                   
Sbjct:   379 QFD-KEKANLEAFTADK-DIAITSDKPAA-AVG-MAGSFTDAERRKCEEELAKLYKQLDD 434

Query:   188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247
             KDEEINQQSQ  EKLK Q+++QEEL+ + RRD + +Q E+ RL  EN+++KEEVKEVLQA
Sbjct:   435 KDEEINQQSQLVEKLKTQMLDQEELLASTRRDQDNMQAELNRLQAENDASKEEVKEVLQA 494

Query:   248 LEE 250
             LEE
Sbjct:   495 LEE 497

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005871 "kinesin complex" evidence=TAS

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006839 "mitochondrial transport" evidence=TAS

GO:0007017 "microtubule-based process" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0008017 "microtubule binding" evidence=ISO

GO:0008152 "metabolic process" evidence=TAS

GO:0031982 "vesicle" evidence=ISO

GO:0035253 "ciliary rootlet" evidence=IDA

GO:0035617 "stress granule disassembly" evidence=IMP

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043227 "membrane-bounded organelle" evidence=IDA

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0047496 "vesicle transport along microtubule" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P28738	KIF5C_MOUSE	No assigned EC number	0.6088	0.8034	0.2437	yes	N/A
O60282	KIF5C_HUMAN	No assigned EC number	0.6056	0.8137	0.2466	yes	N/A
P17210	KINH_DROME	No assigned EC number	0.7098	0.8310	0.2471	yes	N/A
P35978	KINH_STRPU	No assigned EC number	0.6178	0.7896	0.2221	yes	N/A
P34540	KINH_CAEEL	No assigned EC number	0.5934	0.8344	0.2969	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	3e-43
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	4e-33
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	7e-33
cd00106	328	cd00106, KISc, Kinesin motor domain	2e-29
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	2e-28
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	5e-27
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-23
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	2e-23
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	2e-22
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	4e-22
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-21
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	7e-19
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	9e-18
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	1e-16
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-14
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	7e-14
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	1e-13
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	1e-12
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
pfam04156	186	pfam04156, IncA, IncA protein	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
pfam03961	450	pfam03961, DUF342, Protein of unknown function (DU	0.003
pfam06785	401	pfam06785, UPF0242, Uncharacterized protein family	0.003
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.003
PRK04778	569	PRK04778, PRK04778, septation ring formation regul	0.004
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.004

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  150 bits (380), Expect = 3e-43
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVI+AL DG  THIPYRDSKLTRILQ+SLGGN+RTT+IICCSP+S+NESET STL F
Sbjct: 259 ALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRF 318

Query: 68  GRRAKTI 74
           G RAKTI
Sbjct: 319 GARAKTI 325

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  123 bits (311), Expect = 4e-33
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 8   ALRNVISALADGNK-THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
           AL NVI+ALA  +K  HIPYRDSKLTR+LQ+SLGGN++T +I   SP+S N  ET STL 
Sbjct: 261 ALGNVINALAQHSKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLR 320

Query: 67  FGRRAKTIKNVVTVN 81
           F  RAK IKN   VN
Sbjct: 321 FASRAKEIKNKPIVN 335

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  122 bits (309), Expect = 7e-33
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVI+ALA+   +HIPYRDSKLTR+LQ+SLGGN++T +I   SP+  N  ET STL F
Sbjct: 260 ALGNVINALAENQSSHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRF 319

Query: 68  GRRAKTI 74
             RAK I
Sbjct: 320 ASRAKNI 326

Length = 326

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  113 bits (285), Expect = 2e-29
 Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 8   ALRNVISALADGNK-THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
           AL NVISAL+ G K  HIPYRDSKLTR+LQ+SLGGN++T +I   SP+S N  ET STL 
Sbjct: 263 ALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLR 322

Query: 67  FGRRAK 72
           F  RAK
Sbjct: 323 FASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  111 bits (279), Expect = 2e-28
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVISAL D +K  +H+PYRDSKLTR+LQ+SLGGN+ T +I C SPA  N  ET +TL
Sbjct: 272 ALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTL 331

Query: 66  DFGRRAKTIK 75
            +  RA+ IK
Sbjct: 332 KYANRARNIK 341

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  107 bits (268), Expect = 5e-27
 Identities = 42/67 (62%), Positives = 49/67 (73%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISAL DG  THIPYRDSKLTR+LQ+SLGGN++T +     PA +N  ET STL +
Sbjct: 267 ALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRY 326

Query: 68  GRRAKTI 74
             RAK I
Sbjct: 327 ANRAKNI 333

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 12  VISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRA 71
           VI+AL +    HIPYR+SKLTR+LQ+SLGG  +T+II   SPAS N  ET STL++  RA
Sbjct: 282 VINALVE-KSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRA 340

Query: 72  KTIKNVVTVN 81
           K IKN   VN
Sbjct: 341 KNIKNKPEVN 350

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 9   LRNVISALAD-------GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESET 61
           L  VISALAD          + IPYRDS LT +L+E+LGGN++T +I   SPA  N  ET
Sbjct: 277 LGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEET 336

Query: 62  KSTLDFGRRAKTIKNVVTVN 81
            STL +  RAK I NV  VN
Sbjct: 337 LSTLRYADRAKKIVNVAVVN 356

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 94.3 bits (235), Expect = 2e-22
 Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 8   ALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
            L  VIS L++G N  HIPYRDSKLTRILQ SL GNART II   SPAS +  ET +TL 
Sbjct: 254 TLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLK 313

Query: 67  FGRRAKTI 74
           F  RAK +
Sbjct: 314 FASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 93.9 bits (234), Expect = 4e-22
 Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL N I+AL DG K   HIPYRDSKLTR+L++SLGGN +T +I   SP+S +  ET +TL
Sbjct: 270 ALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTL 329

Query: 66  DFGRRAKTI 74
            +  RAK I
Sbjct: 330 KYANRAKNI 338

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 33/254 (12%)

Query: 8   ALRNVISAL-ADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
            L NVI+AL       HIPYR+SKLTR+LQ+SLGGN  T +I   SP+S +  ET +TL 
Sbjct: 269 TLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLK 328

Query: 67  FGRRAKTIKNVVTVNE----ELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR---WRN 119
           F  RAK+IKN + VN         EE K    +++ +      + +    + S    +  
Sbjct: 329 FASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAY 388

Query: 120 GETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERE 179
            +++K+ E   L   +D+                         + S + E ++ L+EE  
Sbjct: 389 MQSLKK-ETETLKSRIDLIMK---------------------SIISGTFERKKLLKEEGW 426

Query: 180 RLYQQLD-EKDEEINQQSQYAEKLKEQIMEQEEL--ITTARRDYEQLQGEMTRLTQENES 236
           +    L   + E         E+L ++  +  +L  +            E T    E+E 
Sbjct: 427 KYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEK 486

Query: 237 AKEEVKEVLQALEE 250
           A +        L  
Sbjct: 487 ASKLRSSASTKLNL 500

Length = 568

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 84.5 bits (210), Expect = 7e-19
 Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL +VISAL   +  H+PYR+SKLT +LQ+SLGGN++T + +  SP   N SET  +L F
Sbjct: 261 ALGDVISALRSKDS-HVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRF 319

Query: 68  GRRAKTIKN 76
             R ++++ 
Sbjct: 320 ASRVRSVEL 328

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 81.4 bits (201), Expect = 9e-18
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 9   LRNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           L +VI AL D   G + H+PYRDSKLT +L++SLGGNA+TTII   SP+S    ET STL
Sbjct: 269 LGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTL 328

Query: 66  DFGRRAKTI 74
            F +RAK I
Sbjct: 329 KFAQRAKLI 337

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 80.0 bits (197), Expect = 1e-16
 Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 4/80 (5%)

Query: 9   LRNVISALAD----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           L N+I+ LA+    G + HIPYRDS+LT +LQESLGGNA+  ++   SP+   +SET ST
Sbjct: 365 LGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFST 424

Query: 65  LDFGRRAKTIKNVVTVNEEL 84
           L F +RAK IKN   VNE +
Sbjct: 425 LRFAQRAKAIKNKAVVNEVM 444

Length = 1320

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL+  I ALA  NK H+P+R SKLT++L++S  GN++T +I   SP++ +   T +TL +
Sbjct: 259 ALKECIRALAS-NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317

Query: 68  GRRAK 72
             R K
Sbjct: 318 ADRVK 322

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 68.3 bits (167), Expect = 7e-14
 Identities = 29/46 (63%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSP 53
            L NVISALA+ + +H+PYR+SKLTR+LQ+SLGGN+RT ++ C SP
Sbjct: 142 TLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL++  +TH+PYR+SKLT +L++SLGGN +T ++        N  ET STL F 
Sbjct: 271 LEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFA 330

Query: 69  RRAK 72
           +R  
Sbjct: 331 QRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L  V+ AL  G    IPYR+SKLTR+LQ+SLGG +R  ++   +P      +T STL+F
Sbjct: 256 VLSKVVDALNKGLP-RIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNF 314

Query: 68  GRRAK 72
             R+K
Sbjct: 315 ASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            LR   + L+      +PYRDSKLT + Q    G  +  +I+  +P + +  ET   + F
Sbjct: 283 VLRE--NQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKF 340

Query: 68  GRRAK 72
              A+
Sbjct: 341 SAIAQ 345

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
           EE ++LE E   L ++L+E + E+ +  +  E+LKE+I   +E +       E+L+  + 
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 229 RLTQENESAKEEVKEVLQALEE 250
            L +  E  +E++  +L+ LEE
Sbjct: 355 ELEEAKEELEEKLSALLEELEE 376

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 11/180 (6%)

Query: 81  NEELTAEEWKRRYEKEK-----EKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPV 135
            EE+   E KR+  +E+     E+    + +L+ LE EL          E E   L + +
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 136 DMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQ 195
           +         E     +   +      L  L   E+++LE+E + L ++ +E +EE+ + 
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEEL-EAEKEELEDELKELEEEKEELEEELREL 896

Query: 196 SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENES-----AKEEVKEVLQALEE 250
                +LKE+I +  E +       E+L+ E+  L +E E       + E++  ++ LEE
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEE 956

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR 229
           E ++LEEE   L  QL++ +EE+         L++ + E    +    R  E+L+ E+  
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 230 LTQENESAKEEVKEVLQALEEPTRTLLN 257
           L +E E  +  ++E+ + LEE    L  
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEE 755

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 28/82 (34%), Positives = 53/82 (64%)

Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
           EE  +LEEE E L ++L+E ++EI +     E+L+E++ E +E +   + + E+L+GE++
Sbjct: 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305

Query: 229 RLTQENESAKEEVKEVLQALEE 250
            L +  E  + E++E+ + LEE
Sbjct: 306 LLRERLEELENELEELEERLEE 327

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQ 224
                E   LEEE E+L  +L+E +EE+ +  +  E+L+E++ E EE + +      +L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 225 GEMTRLTQENESAKEEVKEVLQALEE 250
            E+  L ++ ++ +EE++E+ + LEE
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEE 804

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 87  EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPE 146
           EE +R+ E+ + +    K +L  LE EL + ++     E+E   L + ++         E
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
               S+                E   KL+EE E L ++     EE+ +  +  E+ + ++
Sbjct: 765 EELESL---------------EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809

Query: 207 MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250
              E  + +  +  E+L+ E+  L +E E  +E++ E+ + LEE
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/101 (22%), Positives = 46/101 (45%)

Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
            E ++LEE   +L ++L E + EI +  +  E+ +E++ E E  I       EQL+ E+ 
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLL 269
            L +  +  + E+  + +        L +  R+ +     L
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
            EE ++L+EE +   ++L+E   E+ +  +  E+L+ ++ E EE I   +++   L  E+
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 228 TRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262
           +RL Q+ +  +E +  + + LEE    L     + 
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKL 332

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE 226
             E R +L++  +RL Q    K+E ++++ +  EK +E++ ++E+ +   +++ E+ + E
Sbjct: 77  LRERRNELQKLEKRLLQ----KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132

Query: 227 MTRLTQENESA--------KEEVKE-VLQALEEPTRT 254
           +  L +E             EE KE +L+ +EE  R 
Sbjct: 133 LEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 21/86 (24%), Positives = 49/86 (56%)

Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQ 224
           S   ++  +LE E E+L +++ +  +E+ +     E+L+E++ E EE +  A  + E+L+
Sbjct: 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788

Query: 225 GEMTRLTQENESAKEEVKEVLQALEE 250
            ++ +L +E ++ +E + E+   L  
Sbjct: 789 AQIEQLKEELKALREALDELRAELTL 814

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 137 MAASIAPTPESAPASILPAIPGSGLMLGSL---------------SNEERQKLEEERERL 181
             A +        A I   +  + L LG +                +   QKLEE +  L
Sbjct: 22  GIALLVLFGAGLGALISTLLGIALLALGLVLLALGLLCLLLKAPVQSVRPQKLEELQGEL 81

Query: 182 ---YQQLDEKDEEINQQSQYAEKLKEQIMEQEEL--------------ITTARRDYEQLQ 224
               QQL E  EE+    +   +L+ ++ + +E               + +     ++L 
Sbjct: 82  SELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELA 141

Query: 225 GEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257
            E+  L Q+     EE++E L+ L+E  + L  
Sbjct: 142 KELRELRQDLREEVEELREELERLQENLQRLQE 174

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 82  EELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASI 141
           E+L  E  K+  +  +E+  R K K+ +LE E++        KE E  +  + +    + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 142 APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEI----NQQSQ 197
                +    +   I         L+ EE  +L+EE E L  +L+E D+E     ++   
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLT-EEYAELKEELEDLRAELEEVDKEFAETRDELKD 389

Query: 198 YAEKLKEQIMEQEELITTARRDYEQLQ---GEMTRLTQENESAKEEVKEVLQALEE 250
           Y EKL++   E  EL     R  E+LQ    E+  L       + ++ E+ +  E+
Sbjct: 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 22/88 (25%), Positives = 39/88 (44%)

Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
             E ++LEE  E   ++L E + EI +     E+LKE++    E +   R +   L  E 
Sbjct: 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819

Query: 228 TRLTQENESAKEEVKEVLQALEEPTRTL 255
             L +  ES +  +    + LE+    +
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQI 847

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342)

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
            EE ++LEEE + L ++L++  + + +  + A    +   E+ E +       E+L  E+
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKAR--GQLPPEKREQLEKLLETKEKLSEEL 390

Query: 228 TRLTQENESAKEEVKEVL 245
             L +E +  KEE++ + 
Sbjct: 391 EELEEELKELKEELESLY 408

This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450

>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242)

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 164 GSLSNEERQKLEEERERLYQ---QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY 220
           G L   + +KL E+ E L      ++E+ +E +Q     +KL  Q+     +    +  Y
Sbjct: 70  GQLLQTKIRKLTEQDEGLRNIRESIEERQKESDQLKLQNQKLVNQLGHARGVFIKTKGRY 129

Query: 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252
           ++L+     L +EN+  + ++  ++Q   E  
Sbjct: 130 QKLEELSRHLKEENQCLQIQLDALVQECNEKI 161

Length = 401

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
             LE+       +L+E  +E N+QS+   +LK +I   ++ + T     ++++  +  L 
Sbjct: 313 HSLEKLDTA-IDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371

Query: 232 QENESAKEEVKEVLQALEEPTRTL 255
            E     EE+ ++   L++  +T 
Sbjct: 372 AEFVDNAEELAKLQDELDKIVKTK 395

Length = 562

>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 23/88 (26%), Positives = 45/88 (51%)

Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
           E  ++LE++ E L +Q DE  E I +Q     +L+E++ E  + +    ++ E+L   + 
Sbjct: 348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407

Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLL 256
            L ++   A+E+++     L E  R L 
Sbjct: 408 GLRKDELEAREKLERYRNKLHEIKRYLE 435

Length = 569

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
            EE + L +E E+L ++L+EK E+   Q +  + L+E   E ++ I  A+++ +++  E+
Sbjct: 536 AEEAEALLKEAEKLKEELEEKKEK--LQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593

Query: 228 TRLTQENESA--KEEVKEVLQALEEP 251
            +L +   ++    E+ E  + L + 
Sbjct: 594 RQLQKGGYASVKAHELIEARKRLNKA 619

Length = 782

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG0240|consensus	607		100.0
KOG0243|consensus	1041		100.0
KOG4280|consensus	574		99.95
KOG0245|consensus	1221		99.95
PLN03188	1320	kinesin-12 family protein; Provisional	99.92
KOG0242|consensus	675		99.91
KOG0241|consensus	1714		99.91
KOG0244|consensus	913		99.9
KOG0247|consensus	809		99.89
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	99.87
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	99.87
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	99.86
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	99.85
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	99.85
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	99.84
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	99.84
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	99.84
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	99.84
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	99.82
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	99.82
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	99.82
KOG0246|consensus	676		99.81
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	99.81
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	99.8
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	99.8
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	99.79
KOG0239|consensus	670		99.76
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	99.74
PRK11637	428	AmiB activator; Provisional	96.53
PHA02562	562	46 endonuclease subunit; Provisional	96.43
PRK11637	428	AmiB activator; Provisional	95.84
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.8
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	95.79
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.75
PRK10884	206	SH3 domain-containing protein; Provisional	95.46
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.33
KOG0971|consensus	1243		95.27
PRK09039	343	hypothetical protein; Validated	95.15
KOG0971|consensus	1243		95.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.13
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.09
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.08
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	95.03
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.01
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.99
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.94
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.85
KOG1853|consensus	333		94.83
PRK10884	206	SH3 domain-containing protein; Provisional	94.77
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.76
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	94.76
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.66
KOG0977|consensus	546		94.62
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.55
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.51
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.43
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	94.38
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.2
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.19
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.01
KOG0250|consensus	1074		93.91
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.89
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.86
KOG0999|consensus	772		93.78
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.75
KOG0977|consensus	546		93.68
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.49
PRK09039	343	hypothetical protein; Validated	93.47
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.31
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.99
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.93
COG2433	652	Uncharacterized conserved protein [Function unknow	92.89
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.73
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.71
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.49
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.47
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.38
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.34
PHA02562	562	46 endonuclease subunit; Provisional	92.26
PRK02224	880	chromosome segregation protein; Provisional	91.6
KOG1962|consensus	216		91.57
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.54
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	91.43
KOG0995|consensus	581		91.3
KOG0250|consensus	1074		91.26
KOG0804|consensus	493		91.23
COG2433	652	Uncharacterized conserved protein [Function unknow	91.23
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.16
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.08
PRK04778	569	septation ring formation regulator EzrA; Provision	91.03
KOG4673|consensus	961		90.84
KOG0161|consensus	1930		90.82
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.67
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.49
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.49
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.31
KOG0161|consensus	1930		90.3
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.28
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	90.23
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.18
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.17
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.16
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.1
PRK03918	880	chromosome segregation protein; Provisional	90.08
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.9
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	89.82
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	89.78
KOG0996|consensus	1293		89.74
KOG0976|consensus	1265		89.58
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.48
KOG0243|consensus	1041		89.37
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	89.25
PRK03918	880	chromosome segregation protein; Provisional	89.25
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	89.21
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	89.11
PRK02224	880	chromosome segregation protein; Provisional	89.04
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	89.02
KOG4005|consensus	292		88.92
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.91
PRK09343	121	prefoldin subunit beta; Provisional	88.89
KOG4657|consensus	246		88.63
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.55
KOG2010|consensus	405		88.53
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.36
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	88.35
PRK04863	1486	mukB cell division protein MukB; Provisional	88.34
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.32
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	87.9
PF11544	76	Spc42p: Spindle pole body component Spc42p; InterP	87.73
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.71
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.62
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	87.55
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.48
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	87.47
KOG0964|consensus	1200		87.33
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	87.13
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	87.0
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	86.99
PRK04406	75	hypothetical protein; Provisional	86.81
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.8
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.77
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.73
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	86.7
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.53
PRK13169	110	DNA replication intiation control protein YabA; Re	86.42
PF10186	302	Atg14: UV radiation resistance protein and autopha	86.41
PRK13169	110	DNA replication intiation control protein YabA; Re	86.26
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	86.14
KOG0976|consensus	1265		86.08
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	85.99
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.98
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.94
KOG4360|consensus	596		85.93
KOG0996|consensus	1293		85.89
PRK02119	73	hypothetical protein; Provisional	85.85
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	85.85
KOG4673|consensus	961		85.85
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.82
PRK04778	569	septation ring formation regulator EzrA; Provision	85.74
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	85.72
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.64
KOG0980|consensus	980		85.38
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.33
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	85.22
KOG0933|consensus	1174		85.21
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	85.02
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	84.91
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	84.79
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.64
KOG0933|consensus	1174		84.54
KOG2991|consensus	330		84.36
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	84.23
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	83.75
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	83.65
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	83.35
PRK02119	73	hypothetical protein; Provisional	83.31
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	83.2
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.07
KOG1962|consensus	216		82.73
KOG4360|consensus	596		82.7
PRK04325	74	hypothetical protein; Provisional	82.67
PRK01156	895	chromosome segregation protein; Provisional	82.66
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	82.61
PRK04406	75	hypothetical protein; Provisional	82.3
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	82.16
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	82.16
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.05
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.85
PRK10803	263	tol-pal system protein YbgF; Provisional	81.36
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.24
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.22
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.18
KOG4005|consensus	292		81.07
KOG4809|consensus	654		81.05
PRK00846	77	hypothetical protein; Provisional	81.05
KOG4674|consensus	1822		80.98
KOG4643|consensus	1195		80.98
PRK02793	72	phi X174 lysis protein; Provisional	80.8
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	80.77
KOG2129|consensus	552		80.75
PF14723	179	SSFA2_C: Sperm-specific antigen 2 C-terminus	80.7
KOG0979|consensus	1072		80.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.59
COG4467	114	Regulator of replication initiation timing [Replic	80.58
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	80.42
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	80.4
KOG1853|consensus	333		80.31
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	80.22

>KOG0240|consensus

Probab=100.00  E-value=9.4e-42  Score=328.56  Aligned_cols=247  Identities=57%  Similarity=0.802  Sum_probs=219.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      +||+||+|||+||+||++|+++|||||||||||||+|+|||||+|.+|+||+|+..+..||.+||+|+.||+.|+|.+.+
T Consensus       258 ~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~  337 (607)
T KOG0240|consen  258 NINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWV  337 (607)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcc
Q psy5721          81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSG  160 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (290)
                      |...+.+.|++.|+..++.+..+...+..+...|.+|++|+.++.++++.+.......... ..    ........    
T Consensus       338 n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~-~~----~~~~i~~~----  408 (607)
T KOG0240|consen  338 NLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAIL-SE----EEMSITKL----  408 (607)
T ss_pred             hhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhh-hh----hhhhhhhc----
Confidence            9999999999999999999999999999999999999999999998887654433322100 00    00011100    


Q ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         161 LMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE  240 (290)
Q Consensus       161 ~~~~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e  240 (290)
                         ....+.+.+.+.+++..|++|++++|.+++++++..++++.++.++++..+...+..+..+.++.++|.+++..+++
T Consensus       409 ---~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e  485 (607)
T KOG0240|consen  409 ---KGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE  485 (607)
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               01246778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHhhhhhhh
Q psy5721         241 VKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       241 ~kel~q~LeE~~~~l~~~~  259 (290)
                      ++++.++|++++.+.+-..
T Consensus       486 ~~e~~~al~el~~~~~~~~  504 (607)
T KOG0240|consen  486 VKEVLTALEELAVNYDQKS  504 (607)
T ss_pred             HHHHHHHHHHHHHhhhHHH
Confidence            9999999999997765443

>KOG0243|consensus

Probab=100.00  E-value=1.5e-31  Score=273.74  Aligned_cols=113  Identities=42%  Similarity=0.536  Sum_probs=102.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||.|||+||+||.++. .|||||+|||||||||||||.++|||||||||+..++.||+|||.||.|||.|+|+|.+
T Consensus       318 ~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPev  396 (1041)
T KOG0243|consen  318 EINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEV  396 (1041)
T ss_pred             hhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCcc
Confidence            49999999999999999998 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy5721          81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK  124 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~  124 (290)
                      |..+....+          ++.|-.+|..|+.+|...|.-.++.
T Consensus       397 NQkl~K~~l----------lKd~~~EIerLK~dl~AaReKnGvy  430 (1041)
T KOG0243|consen  397 NQKLMKKTL----------LKDLYEEIERLKRDLAAAREKNGVY  430 (1041)
T ss_pred             chHHHHHHH----------HHHHHHHHHHHHHHHHHhHhhCceE
Confidence            999888665          4566667888888887776554444

>KOG4280|consensus

Probab=99.95  E-value=4.6e-29  Score=245.34  Aligned_cols=108  Identities=51%  Similarity=0.650  Sum_probs=100.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||+++.+.||||||||||+||+|||||||+|+||+||+|+..+++||+|||+||+|||.|+|.|.+
T Consensus       263 ~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~i  342 (574)
T KOG4280|consen  263 NINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVI  342 (574)
T ss_pred             ccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence            59999999999999999999779999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721          81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN  119 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~  119 (290)
                      |.++..           ..++.|+.+|+.|+.++.....
T Consensus       343 ned~~~-----------~~~~~lq~ei~~Lk~~l~~~~~  370 (574)
T KOG4280|consen  343 NEDPKD-----------ALLRELQEEIERLKKELDPGGS  370 (574)
T ss_pred             cCCcch-----------hhHHHHHHHHHHHHHhhccccC
Confidence            999874           3567888889999998887543

>KOG0245|consensus

Probab=99.95  E-value=1.4e-27  Score=241.84  Aligned_cols=104  Identities=41%  Similarity=0.531  Sum_probs=96.3

Q ss_pred             cchhHhHHHHHHHHHHcCC------CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721           2 NIFACGALRNVISALADGN------KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK   75 (290)
Q Consensus         2 IN~SL~~L~~vi~aL~~~~------~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~   75 (290)
                      |||||.|||.||+||++..      +.+||||||.||+||++.||||++|+|||.+||...||+||||||+||.|||+|+
T Consensus       270 INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv  349 (1221)
T KOG0245|consen  270 INKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIV  349 (1221)
T ss_pred             cchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhh
Confidence            9999999999999999822      3699999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          76 NVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR  116 (290)
Q Consensus        76 ~~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~  116 (290)
                      +.+.||+++..           +.|+.|++++..|+..+..
T Consensus       350 ~~avVNEdpna-----------KLIRELreEv~rLksll~~  379 (1221)
T KOG0245|consen  350 NNAVVNEDPNA-----------KLIRELREEVARLKSLLRA  379 (1221)
T ss_pred             ccceeCCCccH-----------HHHHHHHHHHHHHHHHHhc
Confidence            99999999886           4578899999999887653

>PLN03188 kinesin-12 family protein; Provisional

Probab=99.92  E-value=7.6e-26  Score=234.51  Aligned_cols=86  Identities=49%  Similarity=0.654  Sum_probs=80.8

Q ss_pred             CcchhHhHHHHHHHHHHc----CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721           1 MNIFACGALRNVISALAD----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN   76 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~----~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~   76 (290)
                      +||+||++||+||.+|+.    ++..||||||||||+||+|+|||||+|+||+||||+..++.||++||+||.||+.|+|
T Consensus       357 ~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKN  436 (1320)
T PLN03188        357 NINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKN  436 (1320)
T ss_pred             HHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCc
Confidence            599999999999999986    3447999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccCCH
Q psy5721          77 VVTVNEELTA   86 (290)
Q Consensus        77 ~~~~n~~~~~   86 (290)
                      .|.+|.....
T Consensus       437 kpvvNe~~~~  446 (1320)
T PLN03188        437 KAVVNEVMQD  446 (1320)
T ss_pred             cceeccchhh
Confidence            9999987643

>KOG0242|consensus

Probab=99.91  E-value=5e-25  Score=223.24  Aligned_cols=93  Identities=48%  Similarity=0.609  Sum_probs=86.3

Q ss_pred             CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      +||+||++||+||++|.+|. ..||||||||||||||++|||||+|+|||||+|+..+|+||.+||+||+||+.|++++.
T Consensus       257 ~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~  336 (675)
T KOG0242|consen  257 HINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQ  336 (675)
T ss_pred             hhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccc
Confidence            69999999999999999984 47899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCHHHHHHHH
Q psy5721          80 VNEELTAEEWKRRY   93 (290)
Q Consensus        80 ~n~~~~~~~~~~~~   93 (290)
                      +|.......+...+
T Consensus       337 ~n~~~~~~~~~~~~  350 (675)
T KOG0242|consen  337 VNVILSDKALLKYL  350 (675)
T ss_pred             cceecchhhhhHHH
Confidence            99988776554433

>KOG0241|consensus

Probab=99.91  E-value=2.6e-24  Score=215.94  Aligned_cols=104  Identities=44%  Similarity=0.561  Sum_probs=92.9

Q ss_pred             cchhHhHHHHHHHHHHc-----CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721           2 NIFACGALRNVISALAD-----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN   76 (290)
Q Consensus         2 IN~SL~~L~~vi~aL~~-----~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~   76 (290)
                      ||+||++||.||+||++     |+.++||||||.||+||+|.|||||+|.||+||||+++||+||+|||+||.|||.|+|
T Consensus       274 inkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN  353 (1714)
T KOG0241|consen  274 INKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVN  353 (1714)
T ss_pred             cchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhc
Confidence            89999999999999998     3347999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          77 VVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR  116 (290)
Q Consensus        77 ~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~  116 (290)
                      .+.+|.++...           -++.++.++..|...|..
T Consensus       354 ~avvNedpnar-----------virElReEve~lr~qL~~  382 (1714)
T KOG0241|consen  354 HAVVNEDPNAR-----------VIRELREEVEKLREQLEQ  382 (1714)
T ss_pred             cccccCCchHH-----------HHHHHHHHHHHHHHHHhh
Confidence            99999998762           356666677777666643

>KOG0244|consensus

Probab=99.90  E-value=5.5e-23  Score=208.33  Aligned_cols=85  Identities=51%  Similarity=0.660  Sum_probs=80.6

Q ss_pred             cchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           2 NIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         2 IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      ||.+|++||+||+||.+.+ ..||||||||||+||+|+||||+.|+||+||||+..|..||++||+||.||+.|+|+|.+
T Consensus       244 IN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vv  323 (913)
T KOG0244|consen  244 INGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVV  323 (913)
T ss_pred             cchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccc
Confidence            8999999999999999965 269999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCH
Q psy5721          81 NEELTA   86 (290)
Q Consensus        81 n~~~~~   86 (290)
                      |.++..
T Consensus       324 N~d~~~  329 (913)
T KOG0244|consen  324 NQDPKS  329 (913)
T ss_pred             cccHHH
Confidence            996543

>KOG0247|consensus

Probab=99.89  E-value=3e-22  Score=198.34  Aligned_cols=82  Identities=26%  Similarity=0.461  Sum_probs=76.8

Q ss_pred             cchhHhHHHHHHHHHHcCC----CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721           2 NIFACGALRNVISALADGN----KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV   77 (290)
Q Consensus         2 IN~SL~~L~~vi~aL~~~~----~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~   77 (290)
                      ||.||||||+||.+|++++    ..+||||||||||+|+.||.|.++++||+||+|...+|+|++++|+||+.|+.|.+.
T Consensus       360 INtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~  439 (809)
T KOG0247|consen  360 INTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA  439 (809)
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence            9999999999999999833    379999999999999999999999999999999999999999999999999999988


Q ss_pred             cccCcc
Q psy5721          78 VTVNEE   83 (290)
Q Consensus        78 ~~~n~~   83 (290)
                      .+++..
T Consensus       440 ~~~~~~  445 (809)
T KOG0247|consen  440 RPVIKK  445 (809)
T ss_pred             Cccccc
Confidence            877543

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=99.87  E-value=5.7e-23  Score=195.05  Aligned_cols=81  Identities=52%  Similarity=0.682  Sum_probs=78.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      +||+||++|++||.+|+.+. .|||||+||||+||+++|||+|+|+||+||+|+..+++||++||+||.+++.|+|.|.+
T Consensus       271 ~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~  349 (352)
T cd01364         271 NINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEV  349 (352)
T ss_pred             hhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence            59999999999999999987 89999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q psy5721          81 NE   82 (290)
Q Consensus        81 n~   82 (290)
                      |.
T Consensus       350 n~  351 (352)
T cd01364         350 NQ  351 (352)
T ss_pred             CC
Confidence            85

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=99.87  E-value=6e-23  Score=193.99  Aligned_cols=74  Identities=54%  Similarity=0.683  Sum_probs=70.1

Q ss_pred             CcchhHhHHHHHHHHHHc---CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~---~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      +||+||++||+||.+|++   ++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||.||+.|
T Consensus       261 ~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I  337 (337)
T cd01373         261 NINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI  337 (337)
T ss_pred             cccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence            599999999999999986   33589999999999999999999999999999999999999999999999999876

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=99.86  E-value=1.7e-22  Score=190.97  Aligned_cols=74  Identities=53%  Similarity=0.715  Sum_probs=71.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++|++||.+|+.+.+  .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|
T Consensus       263 ~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         263 NINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            499999999999999999773  89999999999999999999999999999999999999999999999999876

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=99.85  E-value=3.9e-22  Score=189.71  Aligned_cols=81  Identities=51%  Similarity=0.645  Sum_probs=76.8

Q ss_pred             CcchhHhHHHHHHHHHHcCC-------CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccc
Q psy5721           1 MNIFACGALRNVISALADGN-------KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKT   73 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~-------~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~   73 (290)
                      .||+||++|++||.+|+.+.       ..||||||||||+||+++|||+++|+||+||+|+..+++||++||+||.+++.
T Consensus       269 ~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~  348 (356)
T cd01365         269 NINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKK  348 (356)
T ss_pred             HHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhh
Confidence            49999999999999998742       48999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccC
Q psy5721          74 IKNVVTVN   81 (290)
Q Consensus        74 i~~~~~~n   81 (290)
                      |++.|.+|
T Consensus       349 i~~~~~~~  356 (356)
T cd01365         349 IVNVAVVN  356 (356)
T ss_pred             ccCccccC
Confidence            99999875

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=99.85  E-value=7.7e-22  Score=187.00  Aligned_cols=72  Identities=26%  Similarity=0.427  Sum_probs=68.3

Q ss_pred             CcchhHhHHHHHHHHHHcC-----CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADG-----NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-----~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      .||+||++|++||.+|+++     ...||||||||||+||+|+|||+|+|+||+||||+..+++||++||+||++|+
T Consensus       269 ~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         269 NINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             hhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            4999999999999999983     35899999999999999999999999999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=99.84  E-value=1.5e-21  Score=183.38  Aligned_cols=74  Identities=73%  Similarity=1.042  Sum_probs=71.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      +||+||++|++||.+|.++++.|||||||+||+||+++|||+|+|+||+||+|+..++.||++||+||+||+.|
T Consensus       252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i  325 (325)
T cd01369         252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI  325 (325)
T ss_pred             HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            48999999999999999988799999999999999999999999999999999999999999999999999875

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=99.84  E-value=1.7e-21  Score=182.68  Aligned_cols=71  Identities=41%  Similarity=0.565  Sum_probs=69.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      .||+||++||+||.+|..+. .|||||||+||+||+|+|||+|+|+||+||+|+..++.||++||+||.|||
T Consensus       249 ~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~  319 (319)
T cd01376         249 AINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK  319 (319)
T ss_pred             hhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            59999999999999999987 899999999999999999999999999999999999999999999999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=99.84  E-value=2.3e-21  Score=182.82  Aligned_cols=74  Identities=57%  Similarity=0.795  Sum_probs=71.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++|++||.+|.+++..|||||+||||+||+++|||+|+|+||+||+|...++.||++||+||+||+.|
T Consensus       260 ~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I  333 (333)
T cd01371         260 KINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI  333 (333)
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            49999999999999999988679999999999999999999999999999999999999999999999999876

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=99.84  E-value=2e-21  Score=182.58  Aligned_cols=71  Identities=37%  Similarity=0.515  Sum_probs=68.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      .||+||++|++||.+|+.++ .||||||||||+||+|+|||+|+|+||+||+|+..++.||++||+||+|+|
T Consensus       252 ~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k  322 (322)
T cd01367         252 EINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK  322 (322)
T ss_pred             HHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence            49999999999999999987 899999999999999999999999999999999999999999999999985

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=99.82  E-value=5.7e-21  Score=180.53  Aligned_cols=75  Identities=56%  Similarity=0.761  Sum_probs=71.8

Q ss_pred             CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721           1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK   75 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~   75 (290)
                      .||+||++|++||.+|..+++  .|||||+||||+||+++|||+++|+||+||+|...++.||++||+||.+|+.|+
T Consensus       265 ~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         265 SINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             HHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence            489999999999999999764  799999999999999999999999999999999999999999999999999885

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=99.82  E-value=7.5e-21  Score=178.47  Aligned_cols=74  Identities=55%  Similarity=0.691  Sum_probs=71.1

Q ss_pred             CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      +||+||++|++||.+|++++ ..||||||||||+||+++|||+|+|+||+||+|...+++||++||+||.+++.|
T Consensus       247 ~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i  321 (321)
T cd01374         247 FINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV  321 (321)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence            59999999999999999985 589999999999999999999999999999999999999999999999999875

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=99.82  E-value=7.4e-21  Score=179.54  Aligned_cols=72  Identities=40%  Similarity=0.569  Sum_probs=69.6

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      +||+||++|++||.+|++++..||||||||||+||+|+|||+|+|+||+||+|+..++.||++||+||.|++
T Consensus       263 ~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         263 YINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             hhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            599999999999999999877899999999999999999999999999999999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>KOG0246|consensus

Probab=99.81  E-value=1.5e-20  Score=182.00  Aligned_cols=77  Identities=34%  Similarity=0.437  Sum_probs=73.2

Q ss_pred             cchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCC-CCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           2 NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGG-NARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         2 IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g-~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      |||||+||..||+||...+ .|+|||.||||.+|+|||-| |++||||+||||...+++.||+||+||.|+|.......
T Consensus       469 INKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~  546 (676)
T KOG0246|consen  469 INKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG  546 (676)
T ss_pred             hhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999987 89999999999999999988 99999999999999999999999999999998875544

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=99.81  E-value=2.3e-20  Score=175.59  Aligned_cols=75  Identities=43%  Similarity=0.615  Sum_probs=72.6

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN   76 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~   76 (290)
                      .||+||++|++||.+|+.+. .|||||+|+||+||+++|||+++|.||+||||...+++||++||+||.+++.|++
T Consensus       254 ~in~Sl~~L~~vl~~l~~~~-~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~  328 (329)
T cd01366         254 AINKSLSALGDVISALRSKD-SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL  328 (329)
T ss_pred             hhhhHHHHHHHHHHHHhcCC-CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence            48999999999999999986 8999999999999999999999999999999999999999999999999999876

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=99.80  E-value=1.7e-20  Score=176.65  Aligned_cols=74  Identities=54%  Similarity=0.808  Sum_probs=69.8

Q ss_pred             CcchhHhHHHHHHHHHHcC-CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      +||+||++|++||.+|+.+ ...|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||.+++.|
T Consensus       261 ~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  261 NINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI  335 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred             eecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence            4899999999999999998 4499999999999999999999999999999999999999999999999999876

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>smart00129 KISc Kinesin motor, catalytic domain

Probab=99.80  E-value=4e-20  Score=174.25  Aligned_cols=81  Identities=58%  Similarity=0.720  Sum_probs=77.2

Q ss_pred             CcchhHhHHHHHHHHHHcC-CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           1 MNIFACGALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      +||+||.+|++||.+|+++ +..|||||+|+||+||+++|+|+++|+||+||+|...+++||++||+||.++++|++.|+
T Consensus       254 ~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~  333 (335)
T smart00129      254 NINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI  333 (335)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence            5899999999999999995 458999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q psy5721          80 VN   81 (290)
Q Consensus        80 ~n   81 (290)
                      ++
T Consensus       334 ~~  335 (335)
T smart00129      334 VN  335 (335)
T ss_pred             cC
Confidence            64

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=99.79  E-value=1.6e-18  Score=173.88  Aligned_cols=106  Identities=42%  Similarity=0.515  Sum_probs=87.5

Q ss_pred             CcchhHhHHHHHHHHHHc-CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           1 MNIFACGALRNVISALAD-GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~-~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      +||+||.+||+||.+|.+ +...|||||+|||||+|+++|||+|+|+||+||+|+..+++||.+||+||++|+.|++.+.
T Consensus       262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~  341 (568)
T COG5059         262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ  341 (568)
T ss_pred             hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence            699999999999999998 3348999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCc----cCCHHHHHHHHHHHHHHHHHHHHH
Q psy5721          80 VNE----ELTAEEWKRRYEKEKEKSSRYKGK  106 (290)
Q Consensus        80 ~n~----~~~~~~~~~~~~~~~~~~~~l~~~  106 (290)
                      +|.    ......+...+...+..+..+...
T Consensus       342 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  372 (568)
T COG5059         342 VNSSSDSSREIEEIKFDLSEDRSEIEILVFR  372 (568)
T ss_pred             ccCcCcchHHHHHHHhhhhhhhhhhhhHHHH
Confidence            985    223334444333334444444433

>KOG0239|consensus

Probab=99.76  E-value=3e-19  Score=180.84  Aligned_cols=79  Identities=41%  Similarity=0.552  Sum_probs=75.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||+... .||||||||||+||+++|||+++|.|+|+|||+..++.||+++|+||.|++.+...+..
T Consensus       568 ~INkSLS~LgdVi~AL~~k~-~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~  646 (670)
T KOG0239|consen  568 NINKSLSALGDVISALASKR-SHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR  646 (670)
T ss_pred             HhchhhhhhHHHHHHHhhcC-CCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence            39999999999999999976 99999999999999999999999999999999999999999999999999999876654

>cd00106 KISc Kinesin motor domain

Probab=99.74  E-value=1.2e-18  Score=163.49  Aligned_cols=72  Identities=60%  Similarity=0.749  Sum_probs=69.2

Q ss_pred             CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      +||+||++|++||.+|+.+. ..|||||+||||+||+|+|+|+++|+||+||+|...++.||++||+||+|++
T Consensus       256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~  328 (328)
T cd00106         256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK  328 (328)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            48999999999999999976 6899999999999999999999999999999999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>PRK11637 AmiB activator; Provisional

Probab=96.53  E-value=0.051  Score=53.21  Aligned_cols=88  Identities=20%  Similarity=0.297  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      .++++..+.+++.+..++|......+..+..++...+..+..+...+...+.++..++.+++.++.++..++.++++...
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             hhhhhhhc
Q psy5721         254 TLLNFFRQ  261 (290)
Q Consensus       254 ~l~~~~~~  261 (290)
                      .+....|.
T Consensus       125 ~l~~rlra  132 (428)
T PRK11637        125 LLAAQLDA  132 (428)
T ss_pred             HHHHHHHH
Confidence            44444433

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.43  E-value=0.23  Score=49.91  Aligned_cols=90  Identities=21%  Similarity=0.291  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLD---EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  246 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~---ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q  246 (290)
                      .+..++.+...+...+.   ....+++.+...+.+++..+......+.+...+...++.++..|..+.....++++++..
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~  386 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD  386 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence            44444444444444443   333334444445555555555555555555566666666666666666556666666666


Q ss_pred             HHhHHHhhhhhhh
Q psy5721         247 ALEEPTRTLLNFF  259 (290)
Q Consensus       247 ~LeE~~~~l~~~~  259 (290)
                      +|+++...+.++.
T Consensus       387 ~l~~~~~~~~~~~  399 (562)
T PHA02562        387 ELDKIVKTKSELV  399 (562)
T ss_pred             HHHHHHHHHHHHH
Confidence            6665554444433

>PRK11637 AmiB activator; Provisional

Probab=95.84  E-value=0.26  Score=48.24  Aligned_cols=90  Identities=8%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  246 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q  246 (290)
                      .....+.+++++..+.+.+.+...++......+..+..++......+..+..++..++.++..++.++..++.++...+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777788888888777888888888888888888888888888888888888888888888888888888777


Q ss_pred             HHhHHHhhhh
Q psy5721         247 ALEEPTRTLL  256 (290)
Q Consensus       247 ~LeE~~~~l~  256 (290)
                      .+......+-
T Consensus       125 ~l~~rlra~Y  134 (428)
T PRK11637        125 LLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHH
Confidence            7776654443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.80  E-value=0.34  Score=35.77  Aligned_cols=67  Identities=27%  Similarity=0.344  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      .+++.+..|.+.-..+..|+.++.+.+++...+..++..+..+..+++.+-.+...+++.|...+++
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3455566666666667777777777777777777888888888888888888888888888777764

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=95.79  E-value=0.22  Score=36.90  Aligned_cols=70  Identities=26%  Similarity=0.388  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      .+...|.+||..|.++..+-++|..+-......+..++..+..++..+..+...++....++..+...+.
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3667889999999999999999888888888888777777777777777777777777777666666554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.75  E-value=1.5  Score=41.48  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhhhhc-cCCCCcchh
Q psy5721         213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE-PTRTLLNFFRQ-SSPKGTLLY  270 (290)
Q Consensus       213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE-~~~~l~~~~~~-~~~~~~~~~  270 (290)
                      ++.+--++.-+++++..++.|.+.++.-+..|...|+- ....++.+-.. +++.+|+|.
T Consensus       191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s  250 (319)
T PF09789_consen  191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMS  250 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCccccccc
Confidence            46667788899999999999999999999999999994 45555644433 667777764

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.46  E-value=0.39  Score=42.60  Aligned_cols=72  Identities=14%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV  244 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel  244 (290)
                      ....++.++..++.+|.+.+.+.+   +....+.+++...+..+..+..+++.+.+++..++.+++.++.++..+
T Consensus        94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666667666666655543   223333333444344444444444444444444444444443333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.33  E-value=2.4  Score=39.36  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5721          88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRNG  120 (290)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~  120 (290)
                      .+..++..-.++|+.|..+-..|+.++..++..
T Consensus         8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen    8 SLNDRLASYIEKVRFLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            345566666778888888888888888877654

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971|consensus

Probab=95.27  E-value=1.7  Score=46.11  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy5721          99 KSSRYKGKLEKLELELSRWR  118 (290)
Q Consensus        99 ~~~~l~~~i~~L~~el~~~~  118 (290)
                      ++..+++++..|+.+|..++
T Consensus       333 eve~lkEr~deletdlEILK  352 (1243)
T KOG0971|consen  333 EVEALKERVDELETDLEILK  352 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=95.15  E-value=0.83  Score=43.63  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK  238 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~  238 (290)
                      ..+.........+...++..+++.++.|+.++...+..+...+......+.++..+..+++.+.
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555566666666666666666665555556666666666655544

>KOG0971|consensus

Probab=95.15  E-value=0.6  Score=49.27  Aligned_cols=93  Identities=25%  Similarity=0.283  Sum_probs=76.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL  245 (290)
Q Consensus       166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~  245 (290)
                      ...+.+.++......|+.+|.+-..+..+...--++++.+|.+.-+.+.-..-+.+.-++....||.|++++++++.+|.
T Consensus       266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele  345 (1243)
T KOG0971|consen  266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE  345 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777788888888888777777777777777888888888887776667777778999999999999999999999


Q ss_pred             HHHhHHHhhhhhh
Q psy5721         246 QALEEPTRTLLNF  258 (290)
Q Consensus       246 q~LeE~~~~l~~~  258 (290)
                      -.||=+++.+-+.
T Consensus       346 tdlEILKaEmeek  358 (1243)
T KOG0971|consen  346 TDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999888877665

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.13  E-value=2.4  Score=38.46  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +...+.++...|...+.+..+++..++..+..++..+..++..+...+.   .++.++..+..+.....++..+|...++
T Consensus        97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579          97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEGQELSSKREELKEKLD  173 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344455566666666666666666666666666666666555544333   3344566666666777777777777777


Q ss_pred             HHHhhhhhhhhccCCC
Q psy5721         250 EPTRTLLNFFRQSSPK  265 (290)
Q Consensus       250 E~~~~l~~~~~~~~~~  265 (290)
                      ......-+.+|-...+
T Consensus       174 ~ell~~yeri~~~~kg  189 (239)
T COG1579         174 PELLSEYERIRKNKKG  189 (239)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            7666666666655433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.09  E-value=1.9  Score=45.51  Aligned_cols=135  Identities=19%  Similarity=0.241  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH
Q psy5721          97 KEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEE  176 (290)
Q Consensus        97 ~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~e  176 (290)
                      -..+..|..-+..++.++..+++.......+........+                             ........+..
T Consensus       237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le-----------------------------~~~s~~~~mK~  287 (775)
T PF10174_consen  237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLE-----------------------------VYKSHSLAMKS  287 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH-----------------------------HHHhhHHHHHH
Confidence            3456677777777788888777654444333221100000                             00111112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL  256 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~  256 (290)
                      ++..+..+|..++.+|..+...++.+..+..+....+..+...+...+.+...||.+++++..++.+-...++.+..++.
T Consensus       288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~  367 (775)
T PF10174_consen  288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE  367 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666666666666666666666666666666666666666666666666666666666666666666666655555


Q ss_pred             hhhh
Q psy5721         257 NFFR  260 (290)
Q Consensus       257 ~~~~  260 (290)
                      .++.
T Consensus       368 ~~qe  371 (775)
T PF10174_consen  368 KLQE  371 (775)
T ss_pred             HHHH
Confidence            5543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.08  E-value=1.9  Score=45.12  Aligned_cols=37  Identities=27%  Similarity=0.521  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE  204 (290)
Q Consensus       168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~  204 (290)
                      ...+++++.++.+|+..|..+++.+..++..+..++.
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999998888866554

; GO: 0016021 integral to membrane

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=95.03  E-value=1.5  Score=36.56  Aligned_cols=86  Identities=26%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      +.-.+..+.|...+...+.++..+...+++|+.++...+..++........++.++..++..+...++++..+...+...
T Consensus        48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~  127 (151)
T PF11559_consen   48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR  127 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666777788888888888888899999888888888888888888888888888888888888888777777666


Q ss_pred             Hhhhhh
Q psy5721         252 TRTLLN  257 (290)
Q Consensus       252 ~~~l~~  257 (290)
                      ..+.-+
T Consensus       128 ~tq~~~  133 (151)
T PF11559_consen  128 KTQYEH  133 (151)
T ss_pred             HHHHHH
Confidence            655444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.01  E-value=0.46  Score=41.52  Aligned_cols=83  Identities=20%  Similarity=0.309  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT  254 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~  254 (290)
                      ..+...+...+..+...|..+...+..|+.++.+.+..+....+.++.+..++..|+.++..++++.+.++.+-.++...
T Consensus       101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666667777777777777777777788888888888888888888888888888888888888877777665


Q ss_pred             hhh
Q psy5721         255 LLN  257 (290)
Q Consensus       255 l~~  257 (290)
                      ...
T Consensus       181 wm~  183 (194)
T PF08614_consen  181 WMQ  183 (194)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.99  E-value=1.6  Score=36.44  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         201 KLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       201 klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      .+..+....+..+..+..++..+..++..+..+++++..+...|.+.++++...+.++.
T Consensus        42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444455555555555555555555555555555554444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.94  E-value=1.4  Score=36.73  Aligned_cols=42  Identities=31%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721         220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~  261 (290)
                      ++.+...+..|..+++.....+++....|.+......++-|+
T Consensus        75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk  116 (143)
T PF12718_consen   75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK  116 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            446677777777777777777777777777777777776664

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.85  E-value=2  Score=40.38  Aligned_cols=53  Identities=23%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT  228 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~  228 (290)
                      .++..|...|..|-++...+...|..|..++.+.+..+....-+++.+...+.
T Consensus       213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34555555666666666666666666666665555555555444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG1853|consensus

Probab=94.83  E-value=3.1  Score=37.99  Aligned_cols=88  Identities=22%  Similarity=0.253  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      +++++.....++++....+.++.+.....+.+++-+.+.+.....+++......--+..+...++.+-+.+.-|+.+|+|
T Consensus        79 Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE  158 (333)
T KOG1853|consen   79 KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE  158 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34555556666666666666666665555555554444444443333222222222333333333334444444444444


Q ss_pred             HHhhhhhh
Q psy5721         251 PTRTLLNF  258 (290)
Q Consensus       251 ~~~~l~~~  258 (290)
                      +...+..+
T Consensus       159 ke~llesv  166 (333)
T KOG1853|consen  159 KEVLLESV  166 (333)
T ss_pred             HHHHHHHH
Confidence            44443333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.77  E-value=0.84  Score=40.51  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ....+...+++++.+..++++...+...   +...+..+.+......+..++++..+|..++..++.++..+..+++.+.
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777766554433   3333344445555555555666666666666666666666666655555


Q ss_pred             hhhhhhhhccCCCCcchhhhhhcc
Q psy5721         253 RTLLNFFRQSSPKGTLLYNHYLLG  276 (290)
Q Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~  276 (290)
                      ..+.-  +--=-+|+++-.-.++|
T Consensus       167 ~~~~~--~wf~~Gg~v~~~GlllG  188 (206)
T PRK10884        167 RTIIM--QWFMYGGGVAGIGLLLG  188 (206)
T ss_pred             HHHHH--HHHHHchHHHHHHHHHH
Confidence            33221  11113455555544554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.76  E-value=2.6  Score=36.87  Aligned_cols=73  Identities=19%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721         189 DEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       189 d~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~  261 (290)
                      ++++..++..+..+.++-...-.....++++++.+..++..||.++..+..+...++....++...-..+++|
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence            3444444444444433333333333333444444444444444444444444444444444444444444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=94.76  E-value=0.82  Score=42.91  Aligned_cols=86  Identities=21%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ...+++++..+-.-...+.|.+-..+.-.+.-|+..+.+.++.+..+.+++.....++.++....+.++.++.+|+.+|.
T Consensus        85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~  164 (302)
T PF09738_consen   85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK  164 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556665556678889999999999999999999999999999999998888999999999999999999999998


Q ss_pred             HHHhhh
Q psy5721         250 EPTRTL  255 (290)
Q Consensus       250 E~~~~l  255 (290)
                      +....|
T Consensus       165 ~rdeli  170 (302)
T PF09738_consen  165 QRDELI  170 (302)
T ss_pred             HHHHHH
Confidence            887666

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.66  E-value=1.2  Score=36.15  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      +|..+|..++.++..+...+..+..+-....+.+
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei   53 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEI   53 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444433333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0977|consensus

Probab=94.62  E-value=1.9  Score=43.57  Aligned_cols=36  Identities=22%  Similarity=0.130  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy5721          88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETV  123 (290)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~  123 (290)
                      .+..++..-.++|+.|.++-..|+.++..++++.+.
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~   81 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR   81 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            445566666678888888888888888888765433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.55  E-value=2.3  Score=46.17  Aligned_cols=19  Identities=16%  Similarity=0.223  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5721          93 YEKEKEKSSRYKGKLEKLE  111 (290)
Q Consensus        93 ~~~~~~~~~~l~~~i~~L~  111 (290)
                      +......+..+...+..++
T Consensus       260 l~~~~~~~~~~~~~~~~~~  278 (1164)
T TIGR02169       260 ISELEKRLEEIEQLLEELN  278 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.51  E-value=1.5  Score=41.31  Aligned_cols=88  Identities=25%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ..+.+++..+...-.+..+++..+++..+.+.+++.+.+.....+..+...+-.+...++.++....++...+..+++-.
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444455555555555555555555544


Q ss_pred             Hhhhhhhh
Q psy5721         252 TRTLLNFF  259 (290)
Q Consensus       252 ~~~l~~~~  259 (290)
                      ..+|..+.
T Consensus       126 ~~~L~~L~  133 (314)
T PF04111_consen  126 SNQLDRLR  133 (314)
T ss_dssp             HHHHHCHH
T ss_pred             HHHHHHHH
Confidence            44444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.43  E-value=1.4  Score=44.41  Aligned_cols=17  Identities=18%  Similarity=0.395  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5721         229 RLTQENESAKEEVKEVL  245 (290)
Q Consensus       229 ~lq~E~~~~~~e~kel~  245 (290)
                      .|..++.....++.+|+
T Consensus       210 ~L~~q~~e~~~ri~~LE  226 (546)
T PF07888_consen  210 SLKEQLAEARQRIRELE  226 (546)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=94.38  E-value=6.3  Score=39.56  Aligned_cols=90  Identities=13%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN-----------ESAK  238 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~-----------~~~~  238 (290)
                      .+.-|+.++.+|-.+++..|........+...|...+...+.....+..++......+.+|+.|+           ..+.
T Consensus       414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS  493 (518)
T PF10212_consen  414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS  493 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35567789999999999999888888888888877776666665556666666666666666655           5566


Q ss_pred             HHHHHHHHHHhHHHhhhhhhh
Q psy5721         239 EEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       239 ~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +++-.|...|......|..+-
T Consensus       494 EHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  494 EHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            677777777777776666655

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.27  E-value=1.2  Score=38.97  Aligned_cols=77  Identities=22%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      ..+..+.......|.....++..+...+..+..++.+....+..+..++..++-++..+...+..++.|+++|-+-.
T Consensus       105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555554433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.20  E-value=3.2  Score=45.10  Aligned_cols=30  Identities=10%  Similarity=0.206  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         230 LTQENESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +..++..+..++..+..++.++...+..+.
T Consensus       460 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~  489 (1164)
T TIGR02169       460 LAADLSKYEQELYDLKEEYDRVEKELSKLQ  489 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.19  E-value=2.9  Score=34.90  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      ...++.++..|...|..-...........+..+..+...+..+..+..+...++.++..+..+.+.+.+..++.+..+.+
T Consensus        19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e   98 (140)
T PF10473_consen   19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE   98 (140)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544444433333334444444444444444444444444444444444444333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.01  E-value=4.1  Score=38.25  Aligned_cols=32  Identities=31%  Similarity=0.301  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         203 KEQIMEQEELITTARRDYEQLQGEMTRLTQEN  234 (290)
Q Consensus       203 k~ql~~qee~~~~~~~e~~~l~~el~~lq~E~  234 (290)
                      .++...|.+.++.+..++..++.+...+-.|+
T Consensus       226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En  257 (306)
T PF04849_consen  226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAEN  257 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33334444444444444444444444333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0250|consensus

Probab=93.91  E-value=2.2  Score=46.07  Aligned_cols=79  Identities=20%  Similarity=0.343  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         181 LYQQLDEKDEEINQQSQYA-EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       181 L~~~L~ekd~ei~~~~~~~-~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +...++.+++.|....... ..+..++.+.+.++..+.++++++++.+..|..+.+...++.++.+.++....-.++.+.
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~  449 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR  449 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3333444444444443333 444445555555566666666666666666666666665555555555544443333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.89  E-value=1.9  Score=40.63  Aligned_cols=87  Identities=31%  Similarity=0.421  Sum_probs=73.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  246 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q  246 (290)
                      ...+.+.++.+...+.+.|.+.+.+-..+.+++..++.+..+.++.....-+....++-++..++.+.++++..+.-...
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~  127 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN  127 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778888888999999888888888888888888888777777777788888888999999999999999999999


Q ss_pred             HHhHHHh
Q psy5721         247 ALEEPTR  253 (290)
Q Consensus       247 ~LeE~~~  253 (290)
                      .|+.+..
T Consensus       128 ~L~~L~k  134 (314)
T PF04111_consen  128 QLDRLRK  134 (314)
T ss_dssp             HHHCHHT
T ss_pred             HHHHHHh
Confidence            9988874

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.86  E-value=3.2  Score=35.72  Aligned_cols=80  Identities=18%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT-------QENESAKEEVKEVLQA  247 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq-------~E~~~~~~e~kel~q~  247 (290)
                      .++...+...+.+...++...+.......+.+...++.+..+......+..+...++       .+.+.....+..+.+.
T Consensus        94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~  173 (191)
T PF04156_consen   94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN  173 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444333333333334444444444444444444444444       3444444444444443


Q ss_pred             HhHHHhh
Q psy5721         248 LEEPTRT  254 (290)
Q Consensus       248 LeE~~~~  254 (290)
                      ++.+...
T Consensus       174 ~~~l~~~  180 (191)
T PF04156_consen  174 LQQLEEK  180 (191)
T ss_pred             HHHHHHH
Confidence            3333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0999|consensus

Probab=93.78  E-value=4.3  Score=40.99  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         201 KLKEQIMEQEELITTARRDYEQLQGEMTRLTQ----------ENESAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       201 klk~ql~~qee~~~~~~~e~~~l~~el~~lq~----------E~~~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      +|+.++.+.+..-+.+-.+...++++.=.||.          |.+.++.+++.+..+.+=+..++.+.+|
T Consensus       153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~  222 (772)
T KOG0999|consen  153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIR  222 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555655555544444555555555444444          4477888888888888888888888775

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.75  E-value=2.2  Score=38.67  Aligned_cols=14  Identities=14%  Similarity=0.375  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy5721         191 EINQQSQYAEKLKE  204 (290)
Q Consensus       191 ei~~~~~~~~klk~  204 (290)
                      ++.+.+..+.++++
T Consensus        60 qv~~~e~ei~~~r~   73 (239)
T COG1579          60 QVSQLESEIQEIRE   73 (239)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG0977|consensus

Probab=93.68  E-value=2.9  Score=42.22  Aligned_cols=83  Identities=30%  Similarity=0.442  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ-------IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK  242 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q-------l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k  242 (290)
                      .+.+++.++.+|..++++.........+.+...+.+       +.+.+-.+..+...+..++.++.+|..|+..+..++.
T Consensus       107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~  186 (546)
T KOG0977|consen  107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA  186 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            455555555555555555544444443333322222       3344444455555566666666666666666666666


Q ss_pred             HHHHHHhHHH
Q psy5721         243 EVLQALEEPT  252 (290)
Q Consensus       243 el~q~LeE~~  252 (290)
                      .+..+|+.-.
T Consensus       187 ~~r~~ld~Et  196 (546)
T KOG0977|consen  187 RARKQLDDET  196 (546)
T ss_pred             HHHHHHHHHH
Confidence            6655554433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.49  E-value=2.6  Score=39.78  Aligned_cols=53  Identities=28%  Similarity=0.497  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ..++.++..+...+...++++..++.++..+..+.+....+..+++.++.++.
T Consensus       212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444445555555555555555555555555554444444

>PRK09039 hypothetical protein; Validated

Probab=93.47  E-value=1.9  Score=41.15  Aligned_cols=17  Identities=24%  Similarity=0.079  Sum_probs=10.1

Q ss_pred             EeeCCCCCChHhhhhhhhhh
Q psy5721          49 ICCSPASFNESETKSTLDFG   68 (290)
Q Consensus        49 ~~vsp~~~~~~EtlstL~fa   68 (290)
                      +.+.|.   |...++||-..
T Consensus        13 ~~~wpg---~vd~~~~ll~~   29 (343)
T PRK09039         13 VDYWPG---FVDALSTLLLV   29 (343)
T ss_pred             CCCCch---HHHHHHHHHHH
Confidence            456664   66677766543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.31  E-value=2.9  Score=42.22  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV  244 (290)
Q Consensus       187 ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel  244 (290)
                      ..+.++......+.+|+.+.++.......+..+.+.+..+...+...+..+++++..+
T Consensus       175 ~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l  232 (546)
T PF07888_consen  175 RLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL  232 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444433333333334444444444443333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.99  E-value=4.2  Score=44.10  Aligned_cols=10  Identities=10%  Similarity=0.215  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q psy5721         100 SSRYKGKLEK  109 (290)
Q Consensus       100 ~~~l~~~i~~  109 (290)
                      +..+...+..
T Consensus       686 ~~~l~~~l~~  695 (1179)
T TIGR02168       686 IEELEEKIAE  695 (1179)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.94  E-value=4.3  Score=44.01  Aligned_cols=15  Identities=13%  Similarity=0.215  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHhHH
Q psy5721         237 AKEEVKEVLQALEEP  251 (290)
Q Consensus       237 ~~~e~kel~q~LeE~  251 (290)
                      +..++..+..++.++
T Consensus       829 l~~~~~~l~~~~~~~  843 (1179)
T TIGR02168       829 LERRIAATERRLEDL  843 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.93  E-value=3.7  Score=38.80  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721         206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP  264 (290)
Q Consensus       206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~  264 (290)
                      +...+..+.....++.....++..++.+++.+++++.++..+..++...|-+..|....
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~  269 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE  269 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555556666666666677777777778888888888888888888888887766543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.89  E-value=2.9  Score=42.56  Aligned_cols=81  Identities=27%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT---TARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~---~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      ..+.+..++|.......+.++..+...+++|+.++........   ...++++.++.++..|..++...+.++.+|...|
T Consensus       425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l  504 (652)
T COG2433         425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL  504 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555544433321   2246777788888888888888888888888888


Q ss_pred             hHHH
Q psy5721         249 EEPT  252 (290)
Q Consensus       249 eE~~  252 (290)
                      .++.
T Consensus       505 ~~l~  508 (652)
T COG2433         505 AELR  508 (652)
T ss_pred             HHHH
Confidence            8776

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.73  E-value=4.2  Score=35.65  Aligned_cols=81  Identities=26%  Similarity=0.415  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ....++...+..++.+++.+....+..+.+++..+.+.++....+....+....++.+++...+++++++..+..+.+..
T Consensus       106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~  185 (190)
T PF05266_consen  106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV  185 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666555555566666666666666666666666666677788888888888888888877766554


Q ss_pred             H
Q psy5721         252 T  252 (290)
Q Consensus       252 ~  252 (290)
                      +
T Consensus       186 ~  186 (190)
T PF05266_consen  186 A  186 (190)
T ss_pred             h
Confidence            3

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.71  E-value=3.1  Score=36.72  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCC
Q psy5721         217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG  266 (290)
Q Consensus       217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~  266 (290)
                      ......++.++..+.-+.+.+.+....++++-+++....-..+..-.+++
T Consensus        92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~  141 (201)
T PF13851_consen   92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT  141 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555544444443333333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.49  E-value=3  Score=30.79  Aligned_cols=52  Identities=31%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ++|..++...-+.++.++.+++.++++...+..++..+++++..+.++-+.-
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~   58 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555555555555555555555555555555444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.47  E-value=3.3  Score=43.28  Aligned_cols=38  Identities=29%  Similarity=0.273  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL  212 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~  212 (290)
                      ..+.++|.....+..+....+......|+.++.+.+..
T Consensus        54 ~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r   91 (717)
T PF09730_consen   54 QAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR   91 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.38  E-value=6.9  Score=40.99  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +.....++.++.+|+.|+...++.+..++.++.
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455566666666666555555555555553

; GO: 0016021 integral to membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.34  E-value=3.6  Score=40.26  Aligned_cols=86  Identities=12%  Similarity=0.208  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL----EEP  251 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L----eE~  251 (290)
                      ++....++.+...+..|....+...+|..++.+++..+..++..+.....++..+...+......+..++.+.    .-+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666666666666666666666666666666666666666666666666666555555544    345


Q ss_pred             Hhhhhhhhhc
Q psy5721         252 TRTLLNFFRQ  261 (290)
Q Consensus       252 ~~~l~~~~~~  261 (290)
                      +..|.-++|+
T Consensus       118 a~~L~A~~r~  127 (420)
T COG4942         118 AEQLAALQRS  127 (420)
T ss_pred             HHHHHHHHhc
Confidence            5667777776

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.26  E-value=3.3  Score=41.59  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      .+.+.+..|......+..+..+....+..+..++.....+..++..+..+++.+..+..++..+...
T Consensus       338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444455555555555555555555555555555555554443

>PRK02224 chromosome segregation protein; Provisional

Probab=91.60  E-value=18  Score=38.59  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHH
Q psy5721         173 KLEEERERLYQQL  185 (290)
Q Consensus       173 ~l~e~~~~L~~~L  185 (290)
                      .+..+...+...+
T Consensus       318 ~l~~k~~el~~~l  330 (880)
T PRK02224        318 ELEDRDEELRDRL  330 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444444

>KOG1962|consensus

Probab=91.57  E-value=2.6  Score=37.65  Aligned_cols=77  Identities=23%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         173 KLEEERERLYQQLDE---KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       173 ~l~e~~~~L~~~L~e---kd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      .++++...+..++.-   .+++.........+++.+++....++.........++.+.+.++.|.+.+.++...|+.+++
T Consensus       131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            334444444444422   23444455556666666666666666666777777777777777777777777777776654

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.54  E-value=8.3  Score=35.13  Aligned_cols=85  Identities=21%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA  247 (290)
Q Consensus       168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~  247 (290)
                      ..+....+.+...++..+.....+|...+..+.+++..+......+.......+........++.+....+..+..+...
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  141 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ  141 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677777777777777777777777777777777666666444444455555555555665555555555555


Q ss_pred             HhHHH
Q psy5721         248 LEEPT  252 (290)
Q Consensus       248 LeE~~  252 (290)
                      +....
T Consensus       142 l~~~r  146 (302)
T PF10186_consen  142 LARRR  146 (302)
T ss_pred             HHHHH
Confidence            55444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=91.43  E-value=5.5  Score=30.87  Aligned_cols=93  Identities=22%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      .+...+......+..++..+-.++..+++.+.++..++...+.++-++.+..+.+..++..|...+..-.+-+..|.+.-
T Consensus         3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E   82 (96)
T PF08647_consen    3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE   82 (96)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34566777788888888999999999999999999999988989989999999999999999999988888888888865


Q ss_pred             hHHHhhhhhhhhc
Q psy5721         249 EEPTRTLLNFFRQ  261 (290)
Q Consensus       249 eE~~~~l~~~~~~  261 (290)
                      .+....|.++.|+
T Consensus        83 ~~~~~~l~~~Eke   95 (96)
T PF08647_consen   83 KEFVRKLKNLEKE   95 (96)
T ss_pred             HHHHHHHHHhhcc
Confidence            5666666666554

>KOG0995|consensus

Probab=91.30  E-value=18  Score=36.66  Aligned_cols=72  Identities=26%  Similarity=0.349  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI---TTARRDYEQLQGEMTRLTQENESAKEEVK  242 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~---~~~~~e~~~l~~el~~lq~E~~~~~~e~k  242 (290)
                      .+.+..+++.+...+.+++.+|+.++.+...|+.++..|.-..   ..+..+...++..+..++-+.+.+.+++-
T Consensus       289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw  363 (581)
T KOG0995|consen  289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW  363 (581)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888899999999999999998888875443222   22223333444444444444444444333

>KOG0250|consensus

Probab=91.26  E-value=19  Score=39.20  Aligned_cols=68  Identities=19%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                      ++.+..+.++.|+.+....+..+.++..+.+.+.+++..-+.+....+.++..+...++.....|-.+
T Consensus       395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL  462 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444443

>KOG0804|consensus

Probab=91.23  E-value=5.6  Score=39.12  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         234 NESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       234 ~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +.+..+.+.+|+.+|-++...|..-+
T Consensus       430 ~~s~d~~I~dLqEQlrDlmf~le~qq  455 (493)
T KOG0804|consen  430 LGSKDEKITDLQEQLRDLMFFLEAQQ  455 (493)
T ss_pred             HHHHHHHHHHHHHHHHhHheehhhhh
Confidence            34455555555555555555444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.23  E-value=4.4  Score=41.30  Aligned_cols=84  Identities=19%  Similarity=0.271  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ..+.+.+..+...+...+.++..+...++.++.++...+.++..+.++...    -.....+..+...++..|..+|.|.
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~~~L~e~  493 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELEEK  493 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666667777777777777776666666666666554441    1122334455555666666666655


Q ss_pred             Hhhhhhhh
Q psy5721         252 TRTLLNFF  259 (290)
Q Consensus       252 ~~~l~~~~  259 (290)
                      ...+..+-
T Consensus       494 ~~~ve~L~  501 (652)
T COG2433         494 KKRVEELE  501 (652)
T ss_pred             HHHHHHHH
Confidence            55544444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.16  E-value=13  Score=34.53  Aligned_cols=65  Identities=22%  Similarity=0.340  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ----ENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~----E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      .+.....++..++.++......+..+...+..|+..+..++.    +.+.+...+..++.++.++...+
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~  278 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM  278 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            333333444444444444444444444444444444433332    22334444555555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.08  E-value=8.9  Score=42.47  Aligned_cols=11  Identities=18%  Similarity=0.326  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHc
Q psy5721           8 ALRNVISALAD   18 (290)
Q Consensus         8 ~L~~vi~aL~~   18 (290)
                      +-..||..|..
T Consensus       553 ~a~~~i~~lk~  563 (1163)
T COG1196         553 VAKKAIEFLKE  563 (1163)
T ss_pred             HHHHHHHHHhh
Confidence            34456666655

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.03  E-value=2.5  Score=43.03  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCC
Q psy5721         213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPN  279 (290)
Q Consensus       213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (290)
                      .+......+.+.+++..+..+-..+.+.+..+.....+....|..+....+.-+..+-.|.+-|-|.
T Consensus       378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~  444 (569)
T PRK04778        378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE  444 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence            3444455555555555555555555555555555555555556665555555455555555555553

>KOG4673|consensus

Probab=90.84  E-value=4  Score=42.17  Aligned_cols=32  Identities=41%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         183 QQLDEKDEEINQQSQYAEKLKEQIMEQEELIT  214 (290)
Q Consensus       183 ~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~  214 (290)
                      ..|.+||+.|+++-.+=++|-++...+...|.
T Consensus       446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIk  477 (961)
T KOG4673|consen  446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIK  477 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            36677888888877666666665555444443

>KOG0161|consensus

Probab=90.82  E-value=9.3  Score=44.24  Aligned_cols=82  Identities=21%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      +......|..++..++.++.++...++.....+......+..+...+..+.+++.........++....+|..+++++..
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555544444444444444444444444444444444444444444444444444443


Q ss_pred             hh
Q psy5721         254 TL  255 (290)
Q Consensus       254 ~l  255 (290)
                      .|
T Consensus      1140 ~L 1141 (1930)
T KOG0161|consen 1140 EL 1141 (1930)
T ss_pred             HH
Confidence            33

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.67  E-value=14  Score=35.00  Aligned_cols=31  Identities=39%  Similarity=0.527  Sum_probs=17.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQ  197 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~  197 (290)
                      +.+....+..++..|++.+.+...+|.-++.
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~  107 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLRE  107 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            3344455666666666666665555544443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.49  E-value=10  Score=35.73  Aligned_cols=55  Identities=7%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721         208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS  262 (290)
Q Consensus       208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~  262 (290)
                      ..++.+.....++.....++..++.++...+..+.+...+..+....|-+..++.
T Consensus       208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555555555555555555555555555555555555555544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.49  E-value=4.2  Score=37.44  Aligned_cols=64  Identities=20%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCCccc
Q psy5721         213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSE  282 (290)
Q Consensus       213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (290)
                      +.++..++...+.++..++.+.+.+++.+.+.+.-|.+...   .++.   .+++--|.-.+||--+-++
T Consensus        68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR---Amq~---nG~~t~Yidvil~SkSfsD  131 (265)
T COG3883          68 IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR---AMQV---NGTATSYIDVILNSKSFSD  131 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---cCChhHHHHHHHccCcHHH
Confidence            33333444444444444444444444444444444443332   2222   2333346777777665554

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.31  E-value=11  Score=32.29  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      .....+.-+...|...++++..++..+...+...-..+...++++.....+...+..++...+..+..+++++..+..+.
T Consensus        42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r  121 (177)
T PF13870_consen   42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER  121 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466777888888899999999988888777777777777777777777777777777777777777777777777777


Q ss_pred             hHHHhhhhhhhhcc
Q psy5721         249 EEPTRTLLNFFRQS  262 (290)
Q Consensus       249 eE~~~~l~~~~~~~  262 (290)
                      +.+......+..+.
T Consensus       122 ~k~~~~~~~l~~~~  135 (177)
T PF13870_consen  122 DKLRKQNKKLRQQG  135 (177)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777665443

>KOG0161|consensus

Probab=90.30  E-value=7  Score=45.17  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL  212 (290)
Q Consensus       169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~  212 (290)
                      .++..+++.+..+...++..+++.+++.....++..++.+.+..
T Consensus       985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen  985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777766666666555555444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.28  E-value=10  Score=36.16  Aligned_cols=19  Identities=21%  Similarity=0.050  Sum_probs=9.0

Q ss_pred             HHHHHHHhHHHhhhhhhhh
Q psy5721         242 KEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       242 kel~q~LeE~~~~l~~~~~  260 (290)
                      ..+..++.+....+.....
T Consensus       249 ~~~~~~l~~~~~~l~~~~~  267 (423)
T TIGR01843       249 TEAQARLAELRERLNKARD  267 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444445555555554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=90.23  E-value=8.2  Score=36.63  Aligned_cols=75  Identities=25%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ..+|+.+-+..-.++-.......+.+......|..+..+++++..++-+++.++++.-..+++...|.++|.|..
T Consensus       101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l  175 (401)
T PF06785_consen  101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL  175 (401)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            344444444445555555556666666666677777777777777777777777777666666666666665543

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.18  E-value=4  Score=36.64  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      +.+....+...+++..++-..+...++.+..++.+..+.+.+++.++..+++.+.++--+...++....+|...+
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~  207 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV  207 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence            334444455555555555555556666666666666666666666666666666666666666666655555543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.17  E-value=6.4  Score=29.51  Aligned_cols=68  Identities=19%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       182 ~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ...+...-+.|.-+.-+++.+|++.....+....+......+..+...++.+-.+-.+.++.|.-.++
T Consensus        10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422         10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333333444444445555555544444444444444445666666666666666666666655544

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=90.16  E-value=6.4  Score=36.42  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      +..|+..|.+-+..+.....+|..|+.||....+.+
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW  105 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDW  105 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444455555554444444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.10  E-value=12  Score=32.73  Aligned_cols=50  Identities=12%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721         205 QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT  254 (290)
Q Consensus       205 ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~  254 (290)
                      ++.+.+..+..++.....+..+...+..|+..+-.++..|+.+...+...
T Consensus        68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e  117 (193)
T PF14662_consen   68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE  117 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            33344444444444444444444444444433333333333333333333

>PRK03918 chromosome segregation protein; Provisional

Probab=90.08  E-value=7.6  Score=41.24  Aligned_cols=10  Identities=10%  Similarity=0.212  Sum_probs=5.2

Q ss_pred             eeCCCCCChH
Q psy5721          50 CCSPASFNES   59 (290)
Q Consensus        50 ~vsp~~~~~~   59 (290)
                      |=.|-..++.
T Consensus       441 c~~~L~~~~~  450 (880)
T PRK03918        441 CGRELTEEHR  450 (880)
T ss_pred             CCCcCCchhH
Confidence            5556555443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.90  E-value=26  Score=36.21  Aligned_cols=18  Identities=22%  Similarity=0.566  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy5721          88 EWKRRYEKEKEKSSRYKG  105 (290)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~  105 (290)
                      .|..+...+...+..|+.
T Consensus        26 ~~qqr~~qmseev~~L~e   43 (617)
T PF15070_consen   26 QWQQRMQQMSEEVRTLKE   43 (617)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=89.82  E-value=9.2  Score=33.83  Aligned_cols=75  Identities=21%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTAR-------RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL  256 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~-------~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~  256 (290)
                      .+..|+.+|-.++..+...+..+...+..+..+.       .+++..+.++.+...+.+-+++.+..+..++.++...+.
T Consensus        25 E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~  104 (202)
T PF06818_consen   25 EVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA  104 (202)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            3334444444444444444444443333333333       244444555555555556666777777777777776666


Q ss_pred             hh
Q psy5721         257 NF  258 (290)
Q Consensus       257 ~~  258 (290)
                      ..
T Consensus       105 ~~  106 (202)
T PF06818_consen  105 CA  106 (202)
T ss_pred             hh
Confidence            65

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=89.78  E-value=17  Score=34.04  Aligned_cols=59  Identities=19%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         194 QQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       194 ~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      .+.+.......+|...-.....++.+.+.+.+++..+....+....+...++..|.++.
T Consensus       183 ~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~  241 (294)
T COG1340         183 ELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE  241 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444444444444444433

>KOG0996|consensus

Probab=89.74  E-value=5.1  Score=43.74  Aligned_cols=42  Identities=12%  Similarity=0.331  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                      +.++....+-+..+..+....+.++..+.+...++....+++
T Consensus       976 ~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~ 1017 (1293)
T KOG0996|consen  976 EKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDI 1017 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            333333333333444444444444444555555555433333

>KOG0976|consensus

Probab=89.58  E-value=4.1  Score=42.81  Aligned_cols=29  Identities=31%  Similarity=0.140  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721         237 AKEEVKEVLQALEEPTRTLLNFFRQSSPK  265 (290)
Q Consensus       237 ~~~e~kel~q~LeE~~~~l~~~~~~~~~~  265 (290)
                      .+.++.+-+..++-....+..+.-|+|--
T Consensus       415 ~kneL~~a~ekld~mgthl~mad~Q~s~f  443 (1265)
T KOG0976|consen  415 AKNELQEALEKLDLMGTHLSMADYQLSNF  443 (1265)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence            33334444444444444444444555443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.48  E-value=8.1  Score=30.67  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      |..-+..|+.++.+..+.+.+|+..+.|+-.++
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555544444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0243|consensus

Probab=89.37  E-value=25  Score=38.24  Aligned_cols=83  Identities=23%  Similarity=0.441  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ....+.++...+...|+.+..++......+.+++.+|...++.++.+...-..+......++..++.....+..+-..|+
T Consensus       477 ~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld  556 (1041)
T KOG0243|consen  477 IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD  556 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45567778888888888888899888888999988888888888887777777777788888888888888888877777


Q ss_pred             HHH
Q psy5721         250 EPT  252 (290)
Q Consensus       250 E~~  252 (290)
                      .+.
T Consensus       557 ~~~  559 (1041)
T KOG0243|consen  557 RKD  559 (1041)
T ss_pred             hhh
Confidence            766

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=89.25  E-value=6.2  Score=37.53  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhcc
Q psy5721         236 SAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLG  276 (290)
Q Consensus       236 ~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~  276 (290)
                      ...+.+++++..+.+....+.++. ..-|++.=+|....||
T Consensus        65 e~~~~i~~L~~~Ik~r~~~l~DmE-a~LPkkNGlyL~liLG  104 (330)
T PF07851_consen   65 EERELIEKLEEDIKERRCQLFDME-AFLPKKNGLYLRLILG  104 (330)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHH-hhCCCCCCcccceecc
Confidence            346677888888888888999988 4446666668888999

; GO: 0016021 integral to membrane

>PRK03918 chromosome segregation protein; Provisional

Probab=89.25  E-value=10  Score=40.24  Aligned_cols=11  Identities=27%  Similarity=0.314  Sum_probs=5.6

Q ss_pred             CCCCCCCChhh
Q psy5721          22 THIPYRDSKLT   32 (290)
Q Consensus        22 ~~vPyRdSkLT   32 (290)
                      ++.|...++|+
T Consensus       436 ~~Cp~c~~~L~  446 (880)
T PRK03918        436 GKCPVCGRELT  446 (880)
T ss_pred             CCCCCCCCcCC
Confidence            45555544443

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=89.21  E-value=7.8  Score=29.12  Aligned_cols=54  Identities=28%  Similarity=0.408  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE  235 (290)
Q Consensus       179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~  235 (290)
                      ..+..+-++.+..|+++-+++..++..+-+.+.....++   +.+++++.+|..+++
T Consensus        21 ~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe   74 (79)
T PF08581_consen   21 NSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            333334455555555555555555555544444433322   223444444444443

; PDB: 3VP9_B 3VP8_B.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=89.11  E-value=15  Score=34.64  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         198 YAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       198 ~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      ++.+++.++..+...+......+..++.++..+...+++...+..++..++.++..
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777777777777777777777777777777777777766665

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK02224 chromosome segregation protein; Provisional

Probab=89.04  E-value=21  Score=38.08  Aligned_cols=13  Identities=15%  Similarity=0.256  Sum_probs=4.9

Q ss_pred             HHHHHHHHhHHHh
Q psy5721         241 VKEVLQALEEPTR  253 (290)
Q Consensus       241 ~kel~q~LeE~~~  253 (290)
                      +.+++..++++..
T Consensus       414 l~~l~~~~~~l~~  426 (880)
T PRK02224        414 LEELREERDELRE  426 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=89.02  E-value=9.7  Score=30.02  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721         200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL  256 (290)
Q Consensus       200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~  256 (290)
                      .-|++-..+-......+...+...+..+.+++.|++++.-.+..|....+.+...+.
T Consensus        15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen   15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444555555555555555555555555555555555555554444

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>KOG4005|consensus

Probab=88.92  E-value=2.9  Score=37.75  Aligned_cols=57  Identities=28%  Similarity=0.212  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                      -|..+.+.++.+..+.+++++|+.+...|++.++.+--++.++-+.|+++...|-++
T Consensus        88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            344455556666666666666666666666666666555666665555555554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.91  E-value=8.8  Score=40.21  Aligned_cols=83  Identities=22%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL  256 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~  256 (290)
                      +.+.+...+.+.+.++.+.+..+...+.+..........+....+.++.+..+|..++..++..-..+.+.-.|+..--|
T Consensus        28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi  107 (717)
T PF09730_consen   28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI  107 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            44444444444444444444444444444443333333444444444444444444443333333333333333333333


Q ss_pred             hhh
Q psy5721         257 NFF  259 (290)
Q Consensus       257 ~~~  259 (290)
                      .+|
T Consensus       108 slQ  110 (717)
T PF09730_consen  108 SLQ  110 (717)
T ss_pred             HHH
Confidence            333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09343 prefoldin subunit beta; Provisional

Probab=88.89  E-value=11  Score=30.45  Aligned_cols=49  Identities=14%  Similarity=0.226  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721         219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT  267 (290)
Q Consensus       219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~  267 (290)
                      -...+.+++.-+..++..++.....++..+.+...+|.++..+-+|+||
T Consensus        72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~  120 (121)
T PRK09343         72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG  120 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3345556666666777777777777888888888888888888888876

>KOG4657|consensus

Probab=88.63  E-value=18  Score=32.55  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA-------RRDYEQLQGEMTRLTQENESAKEEVKE  243 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~-------~~e~~~l~~el~~lq~E~~~~~~e~ke  243 (290)
                      +..+..-...+-+++.+...+...+.+.+.....++...-+.+..-       +.++..+++++..+..-++.++++...
T Consensus        39 r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd  118 (246)
T KOG4657|consen   39 RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD  118 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444444444444666666666666666666665555444443333       333444444444444444444444333


Q ss_pred             H
Q psy5721         244 V  244 (290)
Q Consensus       244 l  244 (290)
                      +
T Consensus       119 ~  119 (246)
T KOG4657|consen  119 S  119 (246)
T ss_pred             H
Confidence            3

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.55  E-value=6.5  Score=38.53  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      .+.....+++.+...+.+-.++..++..++.+++.++...+..+.....++..+..++..+...+..++.+-.+=...|.
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La  118 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA  118 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555444444444555


Q ss_pred             HHHhhhhhhhhccCCC
Q psy5721         250 EPTRTLLNFFRQSSPK  265 (290)
Q Consensus       250 E~~~~l~~~~~~~~~~  265 (290)
                      +.-..+--+-|-++|.
T Consensus       119 ~~L~A~~r~g~~p~~~  134 (420)
T COG4942         119 EQLAALQRSGRNPPPA  134 (420)
T ss_pred             HHHHHHHhccCCCCch
Confidence            5554444444444443

>KOG2010|consensus

Probab=88.53  E-value=4.5  Score=38.19  Aligned_cols=85  Identities=20%  Similarity=0.270  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      +++++..+..--..+.|.+-+.+-=.+.-||..|.++++.++...++.+.+..++.++....+++.....+|+++|....
T Consensus       123 EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRd  202 (405)
T KOG2010|consen  123 EVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD  202 (405)
T ss_pred             HHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44454444444445556666666667788999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhh
Q psy5721         253 RTLLN  257 (290)
Q Consensus       253 ~~l~~  257 (290)
                      ..|.+
T Consensus       203 eliee  207 (405)
T KOG2010|consen  203 ELIEE  207 (405)
T ss_pred             HHHHH
Confidence            87776

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.36  E-value=17  Score=32.93  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         189 DEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       189 d~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      ..++..++..+.++...+..++..+
T Consensus        62 ~~e~e~L~~~~~~l~~~v~~q~~el   86 (251)
T PF11932_consen   62 EREIENLEVYNEQLERQVASQEQEL   86 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.35  E-value=19  Score=32.41  Aligned_cols=56  Identities=32%  Similarity=0.446  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      ..|..++...+......++.+..|+..+..|..++...+...+.+..+|+..-.-|
T Consensus       179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555555555666667777777777777777777777777666544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=88.34  E-value=29  Score=39.55  Aligned_cols=10  Identities=40%  Similarity=0.604  Sum_probs=5.3

Q ss_pred             hhhhhchhhc
Q psy5721          30 KLTRILQESL   39 (290)
Q Consensus        30 kLT~lL~~~l   39 (290)
                      .+|+.+.+|+
T Consensus       212 ~i~~fl~~yl  221 (1486)
T PRK04863        212 AITRSLRDYL  221 (1486)
T ss_pred             hHHHHHHHHc
Confidence            4455555555

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.32  E-value=23  Score=33.42  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         228 TRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       228 ~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      ++|+...+.+..+.+.|+..|+.
T Consensus       181 N~L~Kqm~~l~~eKr~Lq~~l~~  203 (310)
T PF09755_consen  181 NRLWKQMDKLEAEKRRLQEKLEQ  203 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc
Confidence            35566666666677766666655

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.90  E-value=18  Score=31.76  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKL  202 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~kl  202 (290)
                      .+....+...+.+++.++......+.+|
T Consensus        81 q~~~r~~~~klk~~~~el~k~~~~l~~L  108 (194)
T PF15619_consen   81 QEQERELERKLKDKDEELLKTKDELKHL  108 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555554444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=87.90  E-value=12  Score=41.75  Aligned_cols=66  Identities=29%  Similarity=0.455  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchh----hhhhccCCCcccch
Q psy5721         218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY----NHYLLGWPNQSERV  284 (290)
Q Consensus       218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  284 (290)
                      .....++.+...++.+.+.+..+++.+.++++++...+.+++++.+|.+|=|+    .| .-||-+.-.+|
T Consensus       490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~-~p~We~tIGKV  559 (1201)
T PF12128_consen  490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN-KPGWEQTIGKV  559 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC-CCcHHHHhHhh
Confidence            33444445555556666777888888999999999999999999998877553    33 46786654443

>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S

Probab=87.73  E-value=9.6  Score=28.40  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD  219 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e  219 (290)
                      -++...|...|.++++||..+...+..++.++....+....++.+
T Consensus         4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~   48 (76)
T PF11544_consen    4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ   48 (76)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667888888888888888888888877776555554443333

cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.71  E-value=20  Score=34.15  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcch
Q psy5721         234 NESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLL  269 (290)
Q Consensus       234 ~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~  269 (290)
                      +.....++..++..++.....+.. -..-+|-.|.+
T Consensus       248 l~~~~~~l~~~~~~l~~~~~~l~~-~~i~AP~dG~V  282 (423)
T TIGR01843       248 LTEAQARLAELRERLNKARDRLQR-LIIRSPVDGTV  282 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cEEECCCCcEE
Confidence            355677888888888777766544 44555655544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.62  E-value=16  Score=38.48  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721         230 LTQENESAKEEVKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~  261 (290)
                      +..|++.++.+++.|...++++++.+.-.+++
T Consensus       637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~  668 (717)
T PF10168_consen  637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQ  668 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666666777777777766665544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=87.55  E-value=25  Score=32.94  Aligned_cols=91  Identities=20%  Similarity=0.347  Sum_probs=62.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         166 LSNEERQKLEEERERLYQQLDEKDE------EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE  239 (290)
Q Consensus       166 ~~~~e~~~l~e~~~~L~~~L~ekd~------ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~  239 (290)
                      +++..-..+.+++..|..+|...+.      .+..+...+..++.+..+.-+.+..+..+.+.+.++|..+-.+.+.++.
T Consensus       128 L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk  207 (294)
T COG1340         128 LTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK  207 (294)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555667777778877766553      3333445566666677777777788888888888888888877777777


Q ss_pred             HHHHHHHHHhHHHhhhh
Q psy5721         240 EVKEVLQALEEPTRTLL  256 (290)
Q Consensus       240 e~kel~q~LeE~~~~l~  256 (290)
                      +..++..+..+....+.
T Consensus       208 eade~he~~ve~~~~~~  224 (294)
T COG1340         208 EADELHEEFVELSKKID  224 (294)
T ss_pred             HHHHHHHHHHHHHHHhH
Confidence            77777776666554443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.48  E-value=11  Score=33.41  Aligned_cols=85  Identities=24%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-------EMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-------el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +|.-|.++|.+-..++++...+|..|+.++.+....+......+..+..       ++..++.|+...+.+..-+...+.
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~   90 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG   90 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence            3555666666666666666666666666666666665555555555544       233333344444444444444444


Q ss_pred             HHHhhhhhhhhc
Q psy5721         250 EPTRTLLNFFRQ  261 (290)
Q Consensus       250 E~~~~l~~~~~~  261 (290)
                      .+...+..+.-.
T Consensus        91 ~le~El~~Lr~~  102 (202)
T PF06818_consen   91 QLEAELAELREE  102 (202)
T ss_pred             hhHHHHHHHHHH
Confidence            444444444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=87.47  E-value=27  Score=36.81  Aligned_cols=24  Identities=13%  Similarity=0.302  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          93 YEKEKEKSSRYKGKLEKLELELSR  116 (290)
Q Consensus        93 ~~~~~~~~~~l~~~i~~L~~el~~  116 (290)
                      +..++.++..|++++..|...|++
T Consensus       389 ~QplrsENaqLrRrLrilnqqlre  412 (861)
T PF15254_consen  389 MQPLRSENAQLRRRLRILNQQLRE  412 (861)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHH
Confidence            445566777888888888777765

>KOG0964|consensus

Probab=87.33  E-value=14  Score=39.90  Aligned_cols=86  Identities=23%  Similarity=0.286  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      .++.++..+..++.+++++|..+...+...+.++.+......+..++.+.++.+-..++.|=.+++..+..+.+.|+...
T Consensus       415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~  494 (1200)
T KOG0964|consen  415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE  494 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhhhhh
Q psy5721         253 RTLLNF  258 (290)
Q Consensus       253 ~~l~~~  258 (290)
                      .+|.+.
T Consensus       495 ~~L~~~  500 (1200)
T KOG0964|consen  495 KNLRAT  500 (1200)
T ss_pred             HHHHHh
Confidence            777654

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.13  E-value=22  Score=31.93  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         235 ESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       235 ~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +.+...++.|.+.|.+.........
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE  196 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAE  196 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555544444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=87.00  E-value=9.9  Score=27.76  Aligned_cols=7  Identities=29%  Similarity=0.392  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q psy5721         179 ERLYQQL  185 (290)
Q Consensus       179 ~~L~~~L  185 (290)
                      ..|+..|
T Consensus         8 ~~Lr~rL   14 (69)
T PF14197_consen    8 ATLRNRL   14 (69)
T ss_pred             HHHHHHH
Confidence            3333333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=86.99  E-value=14  Score=29.39  Aligned_cols=67  Identities=12%  Similarity=0.215  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE  239 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~  239 (290)
                      .++...+.+...|.-.+..|+........|..+-.+.+.....+..+.......+..|+++++.+..
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~   72 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR   72 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555554444444444444444444444444444444444444433333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK04406 hypothetical protein; Provisional

Probab=86.81  E-value=8.8  Score=28.48  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         220 YEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       220 ~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ++.|..-+.+.+.+++.+..+++.|.+.+.
T Consensus        27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~   56 (75)
T PRK04406         27 IEELNDALSQQQLLITKMQDQMKYVVGKVK   56 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.80  E-value=17  Score=30.19  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHhHHHhhh
Q psy5721         236 SAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       236 ~~~~e~kel~q~LeE~~~~l  255 (290)
                      .+..+++.-..+++.++..|
T Consensus       130 q~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  130 QYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            34445555555555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.77  E-value=6.2  Score=31.34  Aligned_cols=52  Identities=35%  Similarity=0.514  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  246 (290)
Q Consensus       181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q  246 (290)
                      |+..+.+.++.+..+...+..|+.+              +..+-++..+|+.||+.+++.+.++.+
T Consensus         6 l~~~l~~le~~l~~l~~~~~~LK~~--------------~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    6 LFDRLDQLEQQLGQLLEELEELKKQ--------------LQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444444444444444444433              344444555556666666665555544

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.73  E-value=16  Score=33.26  Aligned_cols=47  Identities=26%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHhhhhhhhhcc
Q psy5721         216 ARRDYEQLQGEMTRLTQENESAKE-------EVKEVLQALEEPTRTLLNFFRQS  262 (290)
Q Consensus       216 ~~~e~~~l~~el~~lq~E~~~~~~-------e~kel~q~LeE~~~~l~~~~~~~  262 (290)
                      +..++..++.++.+|..+.+....       ++......+++....|.++...+
T Consensus        80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~  133 (246)
T PF00769_consen   80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP  133 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334444444444444444444444       44444444555555555555444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=86.70  E-value=10  Score=27.67  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA  247 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~  247 (290)
                      ++..+...+..+..++...+..+..+..+.+.....+...-.++..++.++..+..+
T Consensus         6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334334344433333333333333333333333333333333333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.53  E-value=13  Score=38.12  Aligned_cols=88  Identities=25%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-----------------EMTRLTQENESA  237 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-----------------el~~lq~E~~~~  237 (290)
                      +.+...|+.+|++....|......+..+...+......+.....+...++.                 -+.+|+.-.++.
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s  406 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS  406 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444443333333333333333333                 344555555666


Q ss_pred             HHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721         238 KEEVKEVLQALEEPTRTLLNFFRQS  262 (290)
Q Consensus       238 ~~e~kel~q~LeE~~~~l~~~~~~~  262 (290)
                      .+.+.+|.++-+....-|++--|..
T Consensus       407 ~~rl~~L~~qWe~~R~pL~~e~r~l  431 (594)
T PF05667_consen  407 EQRLVELAQQWEKHRAPLIEEYRRL  431 (594)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            6666666666666666555555443

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.42  E-value=5.7  Score=31.75  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE  221 (290)
Q Consensus       180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~  221 (290)
                      .++..+...+..+..+...+..|+..+.+..++...++-+++
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~   46 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND   46 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555444444433333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=86.41  E-value=25  Score=31.90  Aligned_cols=91  Identities=18%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      .....+..++..+...+.++...+..+...+...+..+....................+......+......+..-...+
T Consensus        70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l  149 (302)
T PF10186_consen   70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL  149 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666677777777777777776666666666544444444444455555555555555555555555555555


Q ss_pred             hHHHhhhhhhh
Q psy5721         249 EEPTRTLLNFF  259 (290)
Q Consensus       249 eE~~~~l~~~~  259 (290)
                      -.....+-...
T Consensus       150 ~~~l~~ifpI~  160 (302)
T PF10186_consen  150 IQELSEIFPIE  160 (302)
T ss_pred             HHHHHHHhCce
Confidence            55555555554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.26  E-value=6.3  Score=31.52  Aligned_cols=49  Identities=18%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL  245 (290)
Q Consensus       197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~  245 (290)
                      ..+..+.+++...-..+..+...+..+-++...|+.||+.+++.+.++.
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555666666666666666666666677777777777777766653

>TIGR00606 rad50 rad50

Probab=86.14  E-value=51  Score=37.14  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          91 RRYEKEKEKSSRYKGKLEKLELELS  115 (290)
Q Consensus        91 ~~~~~~~~~~~~l~~~i~~L~~el~  115 (290)
                      ..+......+..+...+..++..+.
T Consensus       751 ~~l~~le~~l~~~~~~le~~~~~l~  775 (1311)
T TIGR00606       751 NKLQKVNRDIQRLKNDIEEQETLLG  775 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333343444444444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0976|consensus

Probab=86.08  E-value=15  Score=38.85  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +...++.-+..++.++.+-+-+|+.....+.++.++|-.....+-...+++.+...++..+..+....-.++.++..+++
T Consensus       121 ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le  200 (1265)
T KOG0976|consen  121 EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALE  200 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555666666666666666666655554444443333333333333344444444333333333333333


Q ss_pred             H
Q psy5721         250 E  250 (290)
Q Consensus       250 E  250 (290)
                      +
T Consensus       201 ~  201 (1265)
T KOG0976|consen  201 E  201 (1265)
T ss_pred             H
Confidence            3

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=85.99  E-value=23  Score=31.00  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      +|+..-.||..++....+|+.+.++....+
T Consensus        49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLC   78 (195)
T PF10226_consen   49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLC   78 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444566666666666666666555554

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=85.98  E-value=19  Score=30.00  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          86 AEEWKRRYEKEKEKSSRYKGKLEKLELELSRW  117 (290)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~  117 (290)
                      .+.+..+++.....++.+......++.++..+
T Consensus         9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL   40 (143)
T PF12718_consen    9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSL   40 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.94  E-value=15  Score=33.05  Aligned_cols=60  Identities=18%  Similarity=0.224  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         192 INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       192 i~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      +.....+.+.|.+++.+.+-.+......++.++.++.+|..+...+-.++-.|...++|+
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            333333334444444444444444444444444444444444444444444444444443

>KOG4360|consensus

Probab=85.93  E-value=17  Score=36.50  Aligned_cols=43  Identities=14%  Similarity=0.152  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE  233 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E  233 (290)
                      .+.....+++..-.++..+.+.++.+...+..+++++.-+..|
T Consensus       213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E  255 (596)
T KOG4360|consen  213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE  255 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333334444444444444455444444444444444443333

>KOG0996|consensus

Probab=85.89  E-value=30  Score=38.07  Aligned_cols=31  Identities=32%  Similarity=0.450  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRW  117 (290)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~  117 (290)
                      ..|.+...+.++..+.+...+..|+.++...
T Consensus       394 ~~~e~~~vk~~E~lK~~~~k~kKleke~ek~  424 (1293)
T KOG0996|consen  394 QDLEREDVKREEKLKRLTSKIKKLEKEIEKA  424 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555566666666666666655543

>PRK02119 hypothetical protein; Provisional

Probab=85.85  E-value=8.3  Score=28.43  Aligned_cols=43  Identities=14%  Similarity=0.133  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      +.+.+++-.+..++.|..-+.+.+.+++.++.+++.|.+.|.+
T Consensus        13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119         13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333334444444444444444444444444444444

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=85.85  E-value=18  Score=29.64  Aligned_cols=83  Identities=14%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQ----SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL  245 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~----~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~  245 (290)
                      -|+.+..-.+.+-.+|++--+.+...    .+.+..+-.++.++.+......++...+..++..+..+.+....-+..|.
T Consensus        37 Trr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le  116 (126)
T PF07889_consen   37 TRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE  116 (126)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34555555566666665555544443    34556666677777777777777777777777777777777777777777


Q ss_pred             HHHhHHH
Q psy5721         246 QALEEPT  252 (290)
Q Consensus       246 q~LeE~~  252 (290)
                      ..+.+..
T Consensus       117 ~ki~~ie  123 (126)
T PF07889_consen  117 GKIDEIE  123 (126)
T ss_pred             HHHHHHh
Confidence            6666554

The region featured in this family is approximately 100 amino acids long.

>KOG4673|consensus

Probab=85.85  E-value=16  Score=37.90  Aligned_cols=62  Identities=21%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN  234 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~  234 (290)
                      .|+.+.++|.+.|+.|++.-..+..-+.++...+..+++.++..+-.+..++.++..+|+.+
T Consensus       499 ~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~  560 (961)
T KOG4673|consen  499 KLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN  560 (961)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            45556666777777776665566666677777777777777777767777777666666654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.82  E-value=18  Score=31.63  Aligned_cols=67  Identities=25%  Similarity=0.286  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE  239 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~  239 (290)
                      .+++++..-.....+.+.+|..++..+.+++.+.............++..++.....+..++...+.
T Consensus       114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~  180 (190)
T PF05266_consen  114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL  180 (190)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444443333333333334444444444444444444333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=85.74  E-value=44  Score=34.06  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +.+.+++..+...+......++........++.++.+..+.+.....+...+.+.+..+...-..+++.+..+...+.
T Consensus       351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~  428 (569)
T PRK04778        351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH  428 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554444444444444444444444444444444444444444444444444334444444443333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=85.72  E-value=19  Score=38.22  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQI  206 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql  206 (290)
                      ...+..|+..|.-++.+.+.+...++.|+..+
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl  352 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRL  352 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33444444444444444444444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.64  E-value=27  Score=31.54  Aligned_cols=55  Identities=13%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR  229 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~  229 (290)
                      +++++.+..+-.+...++..+..+++.++......+..+...+.++..++.++..
T Consensus        41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0980|consensus

Probab=85.38  E-value=57  Score=34.99  Aligned_cols=21  Identities=24%  Similarity=0.145  Sum_probs=10.4

Q ss_pred             HHHHHHHHhHHHhhhhhhhhc
Q psy5721         241 VKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       241 ~kel~q~LeE~~~~l~~~~~~  261 (290)
                      ..++-..++|+.+...+.+|.
T Consensus       542 ~~~~~~~~~e~~~~~~e~e~s  562 (980)
T KOG0980|consen  542 AAELVAREEEREALRLEAERS  562 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            333444445555555555555

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.33  E-value=25  Score=31.72  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA  247 (290)
Q Consensus       208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~  247 (290)
                      ..+..+...+.+..+....+.++..|+.-+++++.++..+
T Consensus        64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=85.22  E-value=19  Score=29.26  Aligned_cols=46  Identities=11%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721         220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK  265 (290)
Q Consensus       220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~  265 (290)
                      .+.+++++..|.-.+.+++...+.++..++++...|..+...--++
T Consensus        72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~  117 (119)
T COG1382          72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANG  117 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            3344444445555555555555555555555555555555444333

>KOG0933|consensus

Probab=85.21  E-value=27  Score=37.85  Aligned_cols=56  Identities=16%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      +.+.+++...+..+..+...+..+..++..+...+.....+++.++.+|.+..+.+
T Consensus       825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~  880 (1174)
T KOG0933|consen  825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ  880 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444445555555555555555544433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=85.02  E-value=8.7  Score=30.52  Aligned_cols=51  Identities=20%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         203 KEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       203 k~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      -..+...+..+..+..++..+...+..+-.||..++-|+..|...|.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566666677777777788888888888888888888888887777665

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=84.91  E-value=27  Score=30.79  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721         235 ESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT  267 (290)
Q Consensus       235 ~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~  267 (290)
                      --++..+..|...|+.+.++|.+....+.+.++
T Consensus       146 ~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~  178 (201)
T PF13851_consen  146 LLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA  178 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            446678888888899999999888887777665

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=84.79  E-value=28  Score=35.82  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         168 NEERQKLEEERERLYQQLDEKDEEINQQSQYA  199 (290)
Q Consensus       168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~  199 (290)
                      ..+.+.+.+++..+..++...+.++..+...+
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~  358 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSL  358 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666655555555444333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.64  E-value=9.7  Score=32.30  Aligned_cols=66  Identities=24%  Similarity=0.317  Sum_probs=46.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI--MEQEELITTARRDYEQLQGEMTRLTQ  232 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql--~~qee~~~~~~~e~~~l~~el~~lq~  232 (290)
                      ++++...+..++..|+.++.+...++..+...+..|...+  .+....+..++.++..++.++..++.
T Consensus        70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677777788888888888888888777777777654  45555666666666666666666665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0933|consensus

Probab=84.54  E-value=66  Score=35.07  Aligned_cols=45  Identities=16%  Similarity=0.328  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         195 QSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE  239 (290)
Q Consensus       195 ~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~  239 (290)
                      +++.+...++++...+..+..+..++..+..++...+.+...+.+
T Consensus       827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~  871 (1174)
T KOG0933|consen  827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA  871 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence            333444444444444444444444444444443333333333333

>KOG2991|consensus

Probab=84.36  E-value=34  Score=31.52  Aligned_cols=194  Identities=19%  Similarity=0.277  Sum_probs=108.9

Q ss_pred             CCCCCCCChhhhhchhhcCC--CCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc------------ccc---CccC
Q psy5721          22 THIPYRDSKLTRILQESLGG--NARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV------------VTV---NEEL   84 (290)
Q Consensus        22 ~~vPyRdSkLT~lL~~~l~g--~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~------------~~~---n~~~   84 (290)
                      .+||.-.++-|++|-|+..|  .+...|--.+  ....--|.+..+++|.+-+.+.-+            |.+   ..-+
T Consensus        93 ~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~--~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l  170 (330)
T KOG2991|consen   93 AYVQALEGKYTRLLSDDITNLKESEEKLKQQQ--QEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL  170 (330)
T ss_pred             HHHHHhcCcccchhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence            57788888889999888765  1100000000  001123455566666654443311            111   0111


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccc
Q psy5721          85 TAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLG  164 (290)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (290)
                      -+.++.-.+.+++.++..-+..|..++.+|+-|+-                  .|+.              .+      +
T Consensus       171 lDPAinl~F~rlK~ele~tk~Klee~QnelsAwkF------------------TPdS--------------~t------G  212 (330)
T KOG2991|consen  171 LDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKF------------------TPDS--------------KT------G  212 (330)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee------------------cCCC--------------cc------h
Confidence            12244455667777777777777777777765541                  0100              00      0


Q ss_pred             cccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         165 SLSNEERQKLEEERERLYQ-----QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE  239 (290)
Q Consensus       165 ~~~~~e~~~l~e~~~~L~~-----~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~  239 (290)
                      .+.-..=+-+.++.+.|=.     .+.+.+-++.-+...-++++..-.+.-.-+..+.++++.+++-+--||.++...+.
T Consensus       213 K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~  292 (330)
T KOG2991|consen  213 KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK  292 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            1101111222223333322     34556666766777777777777777777778888888888888888888888888


Q ss_pred             HHHHHHHHHhHHHhhh
Q psy5721         240 EVKEVLQALEEPTRTL  255 (290)
Q Consensus       240 e~kel~q~LeE~~~~l  255 (290)
                      ++..|...++.....+
T Consensus       293 ~Iq~l~k~~~q~sqav  308 (330)
T KOG2991|consen  293 EIQRLKKGLEQVSQAV  308 (330)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888777665443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=84.23  E-value=22  Score=35.46  Aligned_cols=83  Identities=17%  Similarity=0.243  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA-RRDYEQLQGEMTRLTQENESAKEEVKEVL  245 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~-~~e~~~l~~el~~lq~E~~~~~~e~kel~  245 (290)
                      ..+-.+.+--+...++.+++....+...+..+.++|++........+... ..+...++.+...|+.+...+...+..|+
T Consensus        57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752        57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555666666777777777777777777777776665555555432 23333444444444444444444444444


Q ss_pred             HHHh
Q psy5721         246 QALE  249 (290)
Q Consensus       246 q~Le  249 (290)
                      ..|+
T Consensus       137 ~~l~  140 (472)
T TIGR03752       137 RRLA  140 (472)
T ss_pred             HHHh
Confidence            4443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=83.75  E-value=26  Score=35.36  Aligned_cols=21  Identities=14%  Similarity=0.397  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy5721         191 EINQQSQYAEKLKEQIMEQEE  211 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee  211 (290)
                      .+....+.+...++.+..++.
T Consensus        98 ~Lekre~~Le~ke~~L~~re~  118 (514)
T TIGR03319        98 SLDKKEENLEKKEKELSNKEK  118 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=83.65  E-value=28  Score=33.14  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721         182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE-------QLQGEMTRLTQENESAKEEVKEVLQALEEPTRT  254 (290)
Q Consensus       182 ~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~-------~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~  254 (290)
                      ..-+++...+-.++....++|+.++-.....+..+..+.+       .++++...++.+++++.++..+.+.+-.++...
T Consensus        91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE  170 (401)
T PF06785_consen   91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE  170 (401)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence            3456666777777777778888887666666555544444       444455555666666666666655555555444


Q ss_pred             hhhhh
Q psy5721         255 LLNFF  259 (290)
Q Consensus       255 l~~~~  259 (290)
                      |.+..
T Consensus       171 LaE~l  175 (401)
T PF06785_consen  171 LAEAL  175 (401)
T ss_pred             HHHHH
Confidence            44443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=83.35  E-value=29  Score=32.04  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         236 SAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       236 ~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      ++=+|-..++.+|.++-..++..+|
T Consensus       222 AfmdEyEklE~EL~~lY~~Y~~kfR  246 (267)
T PF10234_consen  222 AFMDEYEKLEEELQKLYEIYVEKFR  246 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444666666666666666666655

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK02119 hypothetical protein; Provisional

Probab=83.31  E-value=12  Score=27.54  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV  244 (290)
Q Consensus       202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel  244 (290)
                      |..++..++..+..+-..+-..+.++..|++++..+.++++++
T Consensus        14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119         14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333333333333344444444444444444444443

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=83.20  E-value=31  Score=30.25  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721         227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP  264 (290)
Q Consensus       227 l~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~  264 (290)
                      -...+.|..++..+....+.+|..+..++..++++...
T Consensus       149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~  186 (192)
T PF11180_consen  149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE  186 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33455566667777777777777777777777776543

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.07  E-value=16  Score=26.80  Aligned_cols=36  Identities=31%  Similarity=0.314  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV  241 (290)
Q Consensus       206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~  241 (290)
                      +.+.+++...+..+....+.....|..+++.++++.
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~   62 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ   62 (79)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444433

>KOG1962|consensus

Probab=82.73  E-value=8.7  Score=34.33  Aligned_cols=60  Identities=23%  Similarity=0.411  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM  227 (290)
Q Consensus       168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el  227 (290)
                      +++.+...++...|+..++.+..+++........++++.+....+.+.+.++...+++++
T Consensus       150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            445566666777777777777777777777777777776666666666655555555544

>KOG4360|consensus

Probab=82.70  E-value=57  Score=32.90  Aligned_cols=94  Identities=23%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-------EMTRLTQENESAKEEVKEV  244 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-------el~~lq~E~~~~~~e~kel  244 (290)
                      +....++..+...|..|-++++.+...+.+|-.+|-+.++++....-+.+.+..       .-..+++|...++++..++
T Consensus       208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~  287 (596)
T KOG4360|consen  208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC  287 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            344445555666666666666666666666666666666555444333332222       2345677777788888888


Q ss_pred             HHHHhHHHhhhhhhhhccCCC
Q psy5721         245 LQALEEPTRTLLNFFRQSSPK  265 (290)
Q Consensus       245 ~q~LeE~~~~l~~~~~~~~~~  265 (290)
                      ++.+.|....|-.+---.-|+
T Consensus       288 m~~~~EaeeELk~lrs~~~p~  308 (596)
T KOG4360|consen  288 MQMLHEAEEELKCLRSCDAPK  308 (596)
T ss_pred             HHHHHHHHHHHHhhccCCCcc
Confidence            888888877776664433343

>PRK04325 hypothetical protein; Provisional

Probab=82.67  E-value=15  Score=27.13  Aligned_cols=25  Identities=12%  Similarity=0.234  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         224 QGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       224 ~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      ..-+...+.+++.+..+++.|...|
T Consensus        29 N~vv~~Qq~~I~~L~~ql~~L~~rl   53 (74)
T PRK04325         29 NATVARQQQTLDLLQAQLRLLYQQM   53 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=82.66  E-value=73  Score=34.13  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYA  199 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~  199 (290)
                      ..+..++..+...+.+.+.++..+...+
T Consensus       472 ~~~~~~i~~l~~~i~~l~~~~~~l~~~~  499 (895)
T PRK01156        472 NHYNEKKSRLEEKIREIEIEVKDIDEKI  499 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444433333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.61  E-value=17  Score=26.70  Aligned_cols=60  Identities=23%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         190 EEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       190 ~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      +-|.-+.-+++.|+++..........+....+.++.+...++.|-..-.++++.|.-..+
T Consensus        18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme   77 (79)
T COG3074          18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            334444445555555555444445555555555666666666666666666666554443

>PRK04406 hypothetical protein; Provisional

Probab=82.30  E-value=16  Score=27.02  Aligned_cols=37  Identities=22%  Similarity=0.182  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV  244 (290)
Q Consensus       208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel  244 (290)
                      .|+..+..+-+.+-..+.++..|++++..+.++++++
T Consensus        22 fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406         22 FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333333333333444444444444444443

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=82.16  E-value=19  Score=27.96  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      +.+..+...+..++..++.+..++..++.++..
T Consensus        70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~  102 (108)
T PF02403_consen   70 EELKAEVKELKEEIKELEEQLKELEEELNELLL  102 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=82.16  E-value=40  Score=30.77  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721          88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRN  119 (290)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~  119 (290)
                      .+...+.....++...+.-|..|+..|.....
T Consensus         3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~   34 (248)
T PF08172_consen    3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA   34 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556667777788888888888888877654

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.05  E-value=24  Score=32.80  Aligned_cols=41  Identities=17%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL  212 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~  212 (290)
                      +-|..+...-...|.++|.||..++..+.++++.-.+.|-.
T Consensus        71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECH  111 (305)
T PF15290_consen   71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECH  111 (305)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666778889999999999999998875544433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.85  E-value=26  Score=28.40  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHhhh
Q psy5721         218 RDYEQLQGEMTRLTQENES-------AKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       218 ~e~~~l~~el~~lq~E~~~-------~~~e~kel~q~LeE~~~~l  255 (290)
                      ..+..++.++..++...++       ..+++.+|+..+.+++..+
T Consensus        68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433       3445555555555555433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.36  E-value=15  Score=33.77  Aligned_cols=42  Identities=12%  Similarity=0.273  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721         212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR  253 (290)
Q Consensus       212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~  253 (290)
                      .+..++.++.+|..+++.++.+++.++++.+++-..|+++-.
T Consensus        62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~  103 (263)
T PRK10803         62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS  103 (263)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555666666677777777778888888888877643

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.24  E-value=33  Score=29.87  Aligned_cols=92  Identities=24%  Similarity=0.335  Sum_probs=51.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q psy5721         166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE----------  235 (290)
Q Consensus       166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~----------  235 (290)
                      ...........+...|...+......|..+...++..+..-.+.+ .-..+-.+...++.++..|+.+++          
T Consensus        59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~-eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i  137 (188)
T PF03962_consen   59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE-EREELLEELEELKKELKELKKELEKYSENDPEKI  137 (188)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            334455666777777888887777777777777777655433332 222233444455555555555543          


Q ss_pred             -HHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         236 -SAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       236 -~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                       ..++++..+..+.+.-+-+|--+
T Consensus       138 ~~~~~~~~~~~~~anrwTDNI~~l  161 (188)
T PF03962_consen  138 EKLKEEIKIAKEAANRWTDNIFSL  161 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHH
Confidence             34444444444554444444333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=81.22  E-value=46  Score=30.87  Aligned_cols=28  Identities=18%  Similarity=0.186  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         233 ENESAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       233 E~~~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      ++.+.+..+..|.+++...+..|...|+
T Consensus       103 Ql~s~Kkqie~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen  103 QLNSCKKQIEKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.18  E-value=43  Score=30.44  Aligned_cols=83  Identities=27%  Similarity=0.354  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ++..|+.+...+.................-..|..++.+....+..+....+....+...|+.++..++.....-...|-
T Consensus        48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~  127 (246)
T PF00769_consen   48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL  127 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444433433333333333333444456667777888888888888888888888999998888887777777765


Q ss_pred             HHH
Q psy5721         250 EPT  252 (290)
Q Consensus       250 E~~  252 (290)
                      ...
T Consensus       128 ~~~  130 (246)
T PF00769_consen  128 EVM  130 (246)
T ss_dssp             ---
T ss_pred             HHH
Confidence            544

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4005|consensus

Probab=81.07  E-value=15  Score=33.34  Aligned_cols=68  Identities=16%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721         197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP  264 (290)
Q Consensus       197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~  264 (290)
                      ..++++..++.+..+....+..+++.|......|..++..+..++..+.++|-+++.+-++--|+-+.
T Consensus        90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ee  157 (292)
T KOG4005|consen   90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEE  157 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhh
Confidence            34567777888888888888899999999999999999999999999999999998887777766543

>KOG4809|consensus

Probab=81.05  E-value=32  Score=34.91  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      +.++....+..+.|+++...+.....++.+.++..+++.....+++.++..+.--++..+++.-.+..+|....
T Consensus       334 e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh  407 (654)
T KOG4809|consen  334 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH  407 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333444444444444444444444444444444444444444444333

>PRK00846 hypothetical protein; Provisional

Probab=81.05  E-value=18  Score=27.07  Aligned_cols=25  Identities=12%  Similarity=0.219  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         227 MTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       227 l~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      +.+.+.+++.++..++-|...|.+.
T Consensus        36 v~~qq~~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846         36 LADARLTGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333333444444444333

>KOG4674|consensus

Probab=80.98  E-value=34  Score=39.54  Aligned_cols=91  Identities=20%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN---------------  234 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~---------------  234 (290)
                      +++.+++...+....+..++.++..+...+..+...+.+.+.........-..++-+..++..+.               
T Consensus       123 qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~  202 (1822)
T KOG4674|consen  123 QKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELS  202 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34455555555555555555555555555555555444444443333222222333333333333               


Q ss_pred             ------HHHHHH----HHHHHHHHhHHHhhhhhhhh
Q psy5721         235 ------ESAKEE----VKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       235 ------~~~~~e----~kel~q~LeE~~~~l~~~~~  260 (290)
                            .++..+    +.+|...|..++..+..++.
T Consensus       203 ~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~  238 (1822)
T KOG4674|consen  203 KVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQE  238 (1822)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                  344444    55555556666666655554

>KOG4643|consensus

Probab=80.98  E-value=87  Score=34.22  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIM  207 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~  207 (290)
                      ++..+..-|...+.+++.+.....+++.+++
T Consensus       489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~k  519 (1195)
T KOG4643|consen  489 QIKNLNKSLNNRDLELSRLHALKNELKEQYK  519 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555543

>PRK02793 phi X174 lysis protein; Provisional

Probab=80.80  E-value=20  Score=26.36  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      .++.|..-+.+.+.+++.+..+++.|.+.|.+
T Consensus        23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793         23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444444444444444444444

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=80.77  E-value=7  Score=26.11  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA  247 (290)
Q Consensus       212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~  247 (290)
                      .+..+....+.+..+...|..|++.++.++..|...
T Consensus         6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k   41 (45)
T PF02183_consen    6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK   41 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444444444433

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2129|consensus

Probab=80.75  E-value=48  Score=32.58  Aligned_cols=61  Identities=21%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME-QEELITTARRDYEQLQGEMTRLTQ  232 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~-qee~~~~~~~e~~~l~~el~~lq~  232 (290)
                      .++..++.+++..-.-+..-+++++.+...|...+++ ++.....+-+.+++|+.+..-||.
T Consensus       161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~  222 (552)
T KOG2129|consen  161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQK  222 (552)
T ss_pred             HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555544333334444444444444444432 222223333444444444444443

>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus

Probab=80.70  E-value=22  Score=30.65  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721         226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLN  257 (290)
Q Consensus       226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~  257 (290)
                      +.+.||.--.+.++++.+|+.+|++...+|.+
T Consensus       146 EaeQLQsLR~avRqElqELE~QL~DRl~~l~e  177 (179)
T PF14723_consen  146 EAEQLQSLRSAVRQELQELEFQLEDRLLQLRE  177 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45567777788999999999999999888754

>KOG0979|consensus

Probab=80.70  E-value=92  Score=33.97  Aligned_cols=39  Identities=15%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721         223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~  261 (290)
                      .+.++..+..++++++..-...+..++.....|+..|+-
T Consensus       316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~e  354 (1072)
T KOG0979|consen  316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAE  354 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444555555555555555555555566666666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.59  E-value=52  Score=34.72  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         236 SAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       236 ~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      ..++|++.+..++..++..|...-
T Consensus       636 ~~~~EL~~~~~~l~~l~~si~~lk  659 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLKASIEQLK  659 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=80.58  E-value=5  Score=31.88  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL  223 (290)
Q Consensus       181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l  223 (290)
                      +..++...+..|+.+.+.+..+|+.+...-+....++-+++.|
T Consensus         6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L   48 (114)
T COG4467           6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL   48 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence            4555666666666666666666655554444444433333333

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=80.42  E-value=22  Score=37.39  Aligned_cols=82  Identities=28%  Similarity=0.324  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDE------------EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESA  237 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~------------ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~  237 (290)
                      +...|.++..-|.++|.+++.            |+..+....--|..++++.       .+..+-++.+...|-..++..
T Consensus       395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es-------~k~~e~lq~kneellk~~e~q  467 (861)
T PF15254_consen  395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQES-------LKSQELLQSKNEELLKVIENQ  467 (861)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHH-------HHhHHHHHHhHHHHHHHHHHH
Confidence            334455555556666655443            3333333333333333333       333334444444555555666


Q ss_pred             HHHHHHHHHHHhHHHhhhhhh
Q psy5721         238 KEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       238 ~~e~kel~q~LeE~~~~l~~~  258 (290)
                      ++|++.+...+.|+...|.+.
T Consensus       468 ~~Enk~~~~~~~ekd~~l~~~  488 (861)
T PF15254_consen  468 KEENKRLRKMFQEKDQELLEN  488 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            666666666666666555544

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=80.40  E-value=21  Score=26.44  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         186 DEKDEEINQQSQYAEKLKEQIMEQEELIT  214 (290)
Q Consensus       186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~  214 (290)
                      .+-++.|..++.+.=.|+-.+-..++.+.
T Consensus         3 rEqe~~i~~L~KENF~LKLrI~fLee~l~   31 (75)
T PF07989_consen    3 REQEEQIDKLKKENFNLKLRIYFLEERLQ   31 (75)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34455566666666556655555555554

>KOG1853|consensus

Probab=80.31  E-value=48  Score=30.48  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      +++.+...+...+.+.+.+.+.+.-+.+..|++...+   ....-+....|+.++....+.-+.+...+++|+|+-+.+.
T Consensus        49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q---~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE  125 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ---RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE  125 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3444445555555555555555555555555544333   2333445556666666666777777777777777655554

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=80.22  E-value=78  Score=32.83  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         235 ESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       235 ~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      ++-..-+++|...|.++...+.++.
T Consensus       191 q~Eq~~~keL~~kl~~l~~~l~~~~  215 (617)
T PF15070_consen  191 QSEQHVKKELQKKLGELQEKLHNLK  215 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456566665555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		2e-39
3kin_B	117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		3e-32
2kin_B	100	Kinesin (Monomeric) From Rattus Norvegicus Length =		2e-31
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		3e-30
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		4e-30
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		5e-26
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		1e-25
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		2e-21
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		3e-19
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-16
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-15
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		2e-15
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		5e-15
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		7e-15
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		7e-15
4a28_A	368	Eg5-2 Length = 368		7e-15
4a1z_A	368	Eg5-1 Length = 368		7e-15
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		7e-15
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		8e-15
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		1e-14
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		1e-14
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		2e-14
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		2e-14
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		1e-13
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		9e-13
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-12
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		1e-12
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		1e-12
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		3e-12
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		3e-12
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		6e-10
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		3e-09
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		3e-09
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		5e-09
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		1e-08
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		2e-08
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-08
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		6e-08
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		6e-08
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		1e-07
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		1e-07
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-07
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-07
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-07
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		7e-07
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		1e-06
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		1e-06
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		1e-06
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		1e-06
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		1e-06
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		4e-06
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		7e-06
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		9e-06
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		1e-05
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		1e-05
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		2e-05
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		2e-05

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/79 (94%), Positives = 77/79 (97%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKSTLDF
Sbjct: 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326
Query: 68  GRRAKTIKNVVTVNEELTA 86
           GRRAKT+KNVV VNEELTA
Sbjct: 327 GRRAKTVKNVVCVNEELTA 345

>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 8  ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
          AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 6  ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 65
Query: 68 GRRAKTIKNVVTVNEELTA 86
          G+RAKTIKN V+VN ELTA
Sbjct: 66 GQRAKTIKNTVSVNLELTA 84

>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 8  ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
          AL NVISALA+G KTH+PYRDSK+TRILQ+SL GN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 10 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMF 69
Query: 68 GRRAKTIKNVVTVNEELTA 86
          G+RAKTIKN V+VN ELTA
Sbjct: 70 GQRAKTIKNTVSVNLELTA 88

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68  GRRAKTIKNVVTVNEELTA 86
           G+RAKTIKN V VN ELTA
Sbjct: 319 GQRAKTIKNTVCVNVELTA 337

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68  GRRAKTIKNVVTVNEELTA 86
           G+RAKTIKN V VN ELTA
Sbjct: 319 GQRAKTIKNTVCVNVELTA 337

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 65/78 (83%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL  VI+AL DG  +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 264 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 323
Query: 68  GRRAKTIKNVVTVNEELT 85
           G RAK+IKN   VN EL+
Sbjct: 324 GMRAKSIKNKAKVNAELS 341

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 63/67 (94%), Gaps = 1/67 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68  GRRAKTI 74
           G+RAKTI
Sbjct: 319 GQRAKTI 325

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 58/80 (72%)
Query: 4   FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
            +  AL NVISAL DG  THIPYRDSKLTR+LQ+SLGGNA+T ++    PAS+N  ET +
Sbjct: 283 LSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLT 342
Query: 64  TLDFGRRAKTIKNVVTVNEE 83
           TL +  RAK IKN   VNE+
Sbjct: 343 TLRYANRAKNIKNKPRVNED 362

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 56/80 (70%)
Query: 4   FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
            +  AL NVI+ALA    THIPYRDSKLTR+LQ+SLGGNA+T ++    PAS +  E+ S
Sbjct: 307 LSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLS 366
Query: 64  TLDFGRRAKTIKNVVTVNEE 83
           TL F  RAK IKN   VNE+
Sbjct: 367 TLRFANRAKNIKNKPRVNED 386

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 4   FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
            +  AL  VIS L +G  THIPYRDSKLTR+LQ+SLGGN++T +    SPAS N  ET S
Sbjct: 266 LSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMS 324
Query: 64  TLDFGRRAKTIKNVVTVNEE 83
           TL +  RAK IKN   +NE+
Sbjct: 325 TLRYADRAKQIKNKPRINED 344

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVISAL D  +  +HIPYRDSK+TRIL++SLGGNA+T +I C SP+S +  ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337
Query: 66  DFGRRAK 72
           ++  RA+
Sbjct: 338 NYASRAQ 344

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69  RRAKTIKNVVTVNEEL 84
            RAK I N   VN++L
Sbjct: 354 HRAKNILNKPEVNQKL 369

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69  RRAKTIKNVVTVNE 82
            RAK I N   VN+
Sbjct: 354 HRAKNILNKPEVNQ 367

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 297 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 355
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 356 HRAKNILNKPEVNQK 370

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 294 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 352
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 353 HRAKNILNKPEVNQK 367

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 354 HRAKNILNKPEVNQK 368

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 354 HRAKNILNKPEVNQK 368

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 354 HRAKNILNKPEVNQK 368

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 286 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 344
Query: 69  RRAKTIKNVVTVNEE 83
            RAK I N   VN++
Sbjct: 345 HRAKNILNKPEVNQK 359

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVISAL D  +  ++IPYRDSK+TRIL++SLGGNA+T +I C SP+S +  ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337
Query: 66  DFGRRAK 72
           ++  RA+
Sbjct: 338 NYASRAQ 344

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL D    H+PYR+SKLTR+LQESLGG  +T+II   SP   +  ET STL++ 
Sbjct: 297 LGRVITALVD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYA 355
Query: 69  RRAKTIKNVVTVNEELT 85
            RAK I+N   VN++LT
Sbjct: 356 HRAKNIQNKPEVNQKLT 372

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 9   LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
           L  VISALA+ +              IPYRDS LT +L+E+LGGN+RT ++   SPA  N
Sbjct: 294 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 353
Query: 58  ESETKSTLDFGRRAKTIKNVVTVNEELTA 86
             ET STL +  RAK I+N V+VN ELTA
Sbjct: 354 YDETLSTLRYADRAKQIRNTVSVNLELTA 382

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++ 
Sbjct: 280 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 338
Query: 69  RRAKTIKN 76
            RAK I N
Sbjct: 339 HRAKNILN 346

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 8   ALRNVISALADGNKT--HIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVI+ALAD  +   HIPYR+SKLTR+L++SLGGN +T +I   SP+S    +T +TL
Sbjct: 287 ALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTL 346
Query: 66  DFGRRAKTI 74
            +  RAK I
Sbjct: 347 KYANRAKDI 355

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + +  SPA  N  ET ++
Sbjct: 259 SLSALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317
Query: 65  LDFGRRAKTIKN 76
           L +  R ++I N
Sbjct: 318 LTYASRVRSIVN 329

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 9   LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
           L  VISALA+ +              IPYRDS LT +L+E+LGGN+RT ++   SPA  N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58  ESETKSTLDFGRRAKTIKNVVTVNEE 83
             ET STL +  RAK I+N V+VN  
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVNHH 363

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 9   LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
           L  VISALA+ +              IPYRDS LT +L+E+LGGN+RT ++   SPA  N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58  ESETKSTLDFGRRAKTIKNVVTVNEE 83
             ET STL +  RAK I+N V+VN  
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVNHH 363

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 9   LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
           L  VISALA+ +              IPYRDS LT +L+E+LGGN+RT ++   SPA  N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58  ESETKSTLDFGRRAKTIKNVVTVN 81
             ET STL +  RAK I+N V+VN
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVN 361

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 5   ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
           +  AL +VI AL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + +  SPA  N  ET ++
Sbjct: 267 SLSALGDVIGALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNS 325
Query: 65  LDFGRRAKTIKN 76
           L +  R +TI N
Sbjct: 326 LLYASRVRTIVN 337

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 9   LRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           L  VI  L+DG     I YRDSKLTRILQ SLGGNA+T II   +P SF+  ET + L F
Sbjct: 264 LGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQF 321
Query: 68  GRRAKTIKNVVTVNE 82
              AK +KN   VNE
Sbjct: 322 ASTAKYMKNTPYVNE 336

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 12  VISALAD----GNKT-HIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
           VISALAD     NK   +PYRDS LT +L++SLGGN++T ++   SPA+ N  ET STL 
Sbjct: 283 VISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLR 342
Query: 67  FGRRAK 72
           +  RAK
Sbjct: 343 YADRAK 348

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 24  IPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNE 82
           +PYRDS LT +L++SLGGN++T +I C SP  ++  ET STL +  +AK I+    VN+
Sbjct: 365 VPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQ 421

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL +VI+AL    + H+P+R+SKLT +LQ+SL G+++T +++  SP   N SET  +L F
Sbjct: 263 ALGDVIAALRS-RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKF 321
Query: 68  GRRAKTIK 75
             R ++++
Sbjct: 322 AERVRSVE 329

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 2   NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESET 61
           ++F  G    V+ AL  G    +PYRDSKLTR+LQ+SLGG+A + +I   +P      +T
Sbjct: 279 SLFVLG---KVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334
Query: 62  KSTLDFGRRAKTIKNVVTVNEEL 84
            S L+F  R+K + N    NE L
Sbjct: 335 VSALNFAARSKEVINRPFTNESL 357

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 5   ACGALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
           +  AL +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET 
Sbjct: 326 SLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETL 385
Query: 63  STLDFGRRAKTIK 75
           ++L F  +  + +
Sbjct: 386 NSLRFASKVNSTR 398

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 8   ALRNVISAL--ADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   DG K HIP+R+SKLT +LQ SL G+++T + +  SPA+ + +ET ++L
Sbjct: 297 CLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSL 356
Query: 66  DFGRRAKTIKNV 77
            F  +    K +
Sbjct: 357 RFASKVNNTKMI 368

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           ++  V+ ++A G+ T IPYRDS LT +LQ SL   +  T + C SP   + SET STL F
Sbjct: 270 SINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 68  GRRAKTIK 75
           G  AK ++
Sbjct: 329 GTSAKKLR 336

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L +VI +L   + +H+PYR+SKLT +L+ SLGGN++T + +  SP + + +ET ++L F 
Sbjct: 646 LGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFA 705
Query: 69  RRA 71
            + 
Sbjct: 706 TKV 708

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           ++  V+ ++A G+ T IPYRDS LT +LQ SL   +  T + C SP   + SET STL F
Sbjct: 270 SINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 68  GRRAK 72
           G  AK
Sbjct: 329 GTSAK 333

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 284 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 343
Query: 66  DFGRRAKTIK 75
            F  +  + +
Sbjct: 344 RFASKVNSTR 353

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 272 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 331
Query: 66  DFGRRAKTIK 75
            F  +  + +
Sbjct: 332 RFASKVNSTR 341

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66  DFGRRAKTIK 75
            F  +  + +
Sbjct: 333 RFASKVNSTR 342

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66  DFGRRAKTIK 75
            F  +  + +
Sbjct: 333 RFASKVNSTR 342

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66  DFGRRAKTIK 75
            F  +  + +
Sbjct: 333 RFASKVNSTR 342

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 12  VISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           VI AL++  ++H+PYR+SKLT +LQ SLGG+A+  + +  SP   N SE+ ++L F
Sbjct: 315 VIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L NVI AL    + HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F 
Sbjct: 315 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 69  RRAKTIK 75
               + K
Sbjct: 374 ASVNSCK 380

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L NVI AL    + HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F 
Sbjct: 318 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
Query: 69  RRAKTIK 75
               + K
Sbjct: 377 ASVNSCK 383

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L NVI AL    + HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F 
Sbjct: 312 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
Query: 69  RRAKTIK 75
               + K
Sbjct: 371 ASVNSCK 377

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L NVI AL    + HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F 
Sbjct: 315 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 69  RRAKTIK 75
               + K
Sbjct: 374 ASVNSCK 380

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L NVI AL    + HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F 
Sbjct: 326 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
Query: 69  RRAKTIK 75
               + K
Sbjct: 385 ASVNSCK 391

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 9   LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
           L   I AL D  + HIP+R  KLT  L++SLGGN    ++      +    ET S+L F 
Sbjct: 294 LEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFA 353
Query: 69  RRAKTI 74
            R K +
Sbjct: 354 SRMKLV 359

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 336 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 394
Query: 67  FGRRAKTI 74
           +  R K +
Sbjct: 395 YADRVKEL 402

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 316 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLR 374
Query: 67  FGRRAKTI 74
           +  R K +
Sbjct: 375 YADRVKEL 382

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 264 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 322
Query: 67  FGRRAK 72
           +  R K
Sbjct: 323 YADRVK 328

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 5   ACGALRNVISAL--ADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
           +   L +VI AL   D  K +IP+R+SKLT +LQ SL G+++T + +   P   + SET 
Sbjct: 273 SLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETL 332
Query: 63  STLDFGRRAKTIK 75
           ++L F  +  + K
Sbjct: 333 NSLRFASKVNSTK 345

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 354 ALKECIRALGR-NKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLR 412
Query: 67  FGRRAKTI 74
           +  R K +
Sbjct: 413 YANRVKEL 420

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL+  I A+ D +K HIP+RDS+LT++L++   G +++ +I   SP      +T +TL +
Sbjct: 266 ALKECIRAM-DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324
Query: 68  GRRAK 72
             R K
Sbjct: 325 SSRVK 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	2e-57
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	3e-55
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	4e-51
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	8e-51
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	3e-45
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-44
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	9e-44
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	7e-43
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	1e-42
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	2e-42
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	3e-42
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	9e-41
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	9e-41
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	2e-39
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	7e-39
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-38
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	1e-36
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	3e-36
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	2e-35
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	4e-35
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-34
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	5e-34
3u06_A	412	Protein claret segregational; motor domain, stalk	2e-33
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	6e-33
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	1e-31
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-31
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	3e-29
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	2e-04

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score =  179 bits (455), Expect = 2e-57
 Identities = 83/112 (74%), Positives = 99/112 (88%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 6   ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 65

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119
           G+RAKTIKN V+VN ELTAEEWK++YEKEKEK+   K  ++ LE+EL+RWRN
Sbjct: 66  GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  181 bits (462), Expect = 3e-55
 Identities = 92/99 (92%), Positives = 96/99 (96%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKSTLDF
Sbjct: 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGK 106
           GRRAKT+KNVV VNEELTAEEWKRRYEKEKEK++R KGK
Sbjct: 327 GRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGK 365

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  170 bits (433), Expect = 4e-51
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL  VI+AL DG  +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 264 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 323

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEK 99
           G RAK+IKN   VN EL+  E K+   K K +
Sbjct: 324 GMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ 355

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score =  161 bits (410), Expect = 8e-51
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G KTH+PYRDSK+TRILQ+SL GN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 10  ALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMF 69

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKE 98
           G+RAKTIKN V+VN ELTAEEWK++YEKEKE
Sbjct: 70  GQRAKTIKNTVSVNLELTAEEWKKKYEKEKE 100

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  155 bits (395), Expect = 3e-45
 Identities = 48/84 (57%), Positives = 58/84 (69%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISAL DG  THIPYRDSKLTR+LQ+SLGGNA+T ++    PAS+N  ET +TL +
Sbjct: 287 ALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRY 346

Query: 68  GRRAKTIKNVVTVNEELTAEEWKR 91
             RAK IKN   VNE+      + 
Sbjct: 347 ANRAKNIKNKPRVNEDPKDALLRE 370

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  154 bits (392), Expect = 1e-44
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L  V+ AL  G    +PYRDSKLTR+LQ+SLGG+A + +I   +P      +T S L+F
Sbjct: 282 VLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNF 340

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKE 98
             R+K + N    NE L           +KE
Sbjct: 341 AARSKEVINRPFTNESLQPHALGPVKLSQKE 371

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  152 bits (385), Expect = 9e-44
 Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L  VI+AL D    H+PYR+SKLTR+LQESLGG  +T+II   SP   +  ET STL++
Sbjct: 296 TLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEY 354

Query: 68  GRRAKTIKNVVTVNEELT 85
             RAK I+N   VN++LT
Sbjct: 355 AHRAKNIQNKPEVNQKLT 372

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  148 bits (377), Expect = 7e-43
 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL  VIS L +G  THIPYRDSKLTR+LQ+SLGGN++T +    SPAS N  ET STL +
Sbjct: 270 ALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRY 328

Query: 68  GRRAKTIKNVVTVNEELTAEE 88
             RAK IKN   +NE+    +
Sbjct: 329 ADRAKQIKNKPRINEDPKDAQ 349

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  148 bits (376), Expect = 1e-42
 Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL++
Sbjct: 285 TLGRVITALVERTP-HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 343

Query: 68  GRRAKTIKNVVTVNEE 83
             RAK I N   VN++
Sbjct: 344 AHRAKNILNKPEVNQK 359

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  147 bits (374), Expect = 2e-42
 Identities = 43/88 (48%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 8   ALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
            L  VI  L+DG     I YRDSKLTRILQ SLGGNA+T II   +P SF+  ET + L 
Sbjct: 263 ILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQ 320

Query: 67  FGRRAKTIKNVVTVNEELTAEEWKRRYE 94
           F   AK +KN   VNE  T E     + 
Sbjct: 321 FASTAKYMKNTPYVNEVSTDELEHHHHH 348

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  147 bits (373), Expect = 3e-42
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           ++  V+ ++A G  T IPYRDS LT +LQ SL   +  T + C SP   + SET STL F
Sbjct: 270 SINKVVMSMAAG-HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328

Query: 68  GRRAKTIKNVVTVN 81
           G  AK        +
Sbjct: 329 GTSAKAAALEHHHH 342

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  143 bits (364), Expect = 9e-41
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + +  SPA  N  ET ++L +
Sbjct: 262 ALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTY 320

Query: 68  GRRAKTIKNVVTVNEELT-AEEWKRRYEKEKEKSSRYKGKLEKLELE 113
             R ++I N  + N         K+     KE++ R     E  E++
Sbjct: 321 ASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQ 367

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  143 bits (364), Expect = 9e-41
 Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 11/87 (12%)

Query: 8   ALRNVISALAD-----------GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASF 56
            L  VISALA+                IPYRDS LT +L+E+LGGN+RT ++   SPA  
Sbjct: 277 TLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADI 336

Query: 57  NESETKSTLDFGRRAKTIKNVVTVNEE 83
           N  ET STL +  RAK I+N V+VN  
Sbjct: 337 NYDETLSTLRYADRAKQIRNTVSVNHH 363

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  139 bits (353), Expect = 2e-39
 Identities = 53/67 (79%), Positives = 62/67 (92%), Gaps = 1/67 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G  T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318

Query: 68  GRRAKTI 74
           G+RAKTI
Sbjct: 319 GQRAKTI 325

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  138 bits (349), Expect = 1e-38
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL+  I A+ D +K HIP+RDS+LT++L++   G +++ +I   SP      +T +TL +
Sbjct: 266 ALKECIRAM-DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKE 96
             R K   N     + +          + 
Sbjct: 325 SSRVKNKGNSKLEGKPIPNPLLGLDSSRT 353

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  132 bits (335), Expect = 1e-36
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 8   ALRNVISALAD-----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
            L  VISALAD          +PYRDS LT +L++SLGGN++T ++   SPA+ N  ET 
Sbjct: 279 TLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETL 338

Query: 63  STLDFGRRAKTIKN 76
           STL +  RAK   +
Sbjct: 339 STLRYADRAKHHHH 352

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  131 bits (332), Expect = 3e-36
 Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 2/67 (2%)

Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVISAL D  +  +HIPYRDSK+TRIL++SLGGNA+T +I C SP+S +  ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337

Query: 66  DFGRRAK 72
           ++  RA+
Sbjct: 338 NYASRAQ 344

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  131 bits (331), Expect = 2e-35
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 23/114 (20%)

Query: 8   ALRNVISALADGNKT---------------------HIPYRDSKLTRILQESLGGNARTT 46
            L  VI+ALAD   +                      +PYRDS LT +L++SLGGN++T 
Sbjct: 328 TLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA 387

Query: 47  IIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKS 100
           +I C SP  ++  ET STL +  +AK I+    VN+       +R  +      
Sbjct: 388 MIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSIVH 439

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  128 bits (324), Expect = 4e-35
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332

Query: 66  DFGRRAKTIKN 76
            F  +  + + 
Sbjct: 333 RFASKVNSTRL 343

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  126 bits (320), Expect = 1e-34
 Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL +VI+AL      H+P+R+SKLT +LQ+SL G+++T +++  SP   N SET  +L F
Sbjct: 263 ALGDVIAALRSRQG-HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKF 321

Query: 68  GRRAKTIK 75
             R ++++
Sbjct: 322 AERVRSVE 329

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  125 bits (317), Expect = 5e-34
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            L +VI AL   D  K +IP+R+SKLT +LQ SL G+++T + +   P   + SET ++L
Sbjct: 276 CLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSL 335

Query: 66  DFGRRAKTIKN 76
            F  +  + K 
Sbjct: 336 RFASKVNSTKI 346

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  125 bits (315), Expect = 2e-33
 Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L NVI AL      HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F
Sbjct: 317 ELTNVILALLQKQD-HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRF 375

Query: 68  GRRAKTIK-NVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEK 109
                + K      N  L              +S+   G  +K
Sbjct: 376 AASVNSCKMTKAKRNRYL-----NNSVANSSTQSNN-SGSFDK 412

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  123 bits (312), Expect = 6e-33
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 8   ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL +VI AL   D  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET ++L
Sbjct: 329 ALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 388

Query: 66  DFGRRAKTIKN 76
            F  +  + + 
Sbjct: 389 RFASKVNSTRL 399

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  119 bits (300), Expect = 1e-31
 Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 8   ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
           AL NVI+ALAD  +   HIPYR+SKLTR+L++SLGGN +T +I   SP+S    +T +TL
Sbjct: 287 ALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTL 346

Query: 66  DFGRRAKTI 74
            +  RAK I
Sbjct: 347 KYANRAKDI 355

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  119 bits (301), Expect = 1e-31
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L  VI AL++    H+PYR+SKLT +LQ SLGG+A+  + +  SP   N SE+ ++L F
Sbjct: 311 TLGLVIMALSNKES-HVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369

Query: 68  GRRAK 72
             +  
Sbjct: 370 ASKVN 374

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  113 bits (286), Expect = 3e-29
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL    K H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 336 ALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 394

Query: 67  FGRRAKTIKNVVTVN 81
           +  R K + +    +
Sbjct: 395 YADRVKELSHHHHHH 409

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  108 bits (273), Expect = 1e-27
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 316 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLR 374

Query: 67  FGRRAKTIKN 76
           +  R K +  
Sbjct: 375 YADRVKELSP 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 59/332 (17%), Positives = 92/332 (27%), Gaps = 98/332 (29%)

Query: 9   LRNV-----ISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
           L NV      +A     K  +  R  ++T    + L     T I +     +    E KS
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 64  TL---------DFGRRAKTIKNVV--TVNEEL-----TAEEWKRRYEKEKEKSSRYKGKL 107
            L         D  R   T        + E +     T + WK     +K  +   +  L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTII-ESSL 363

Query: 108 EKLELELSR-----------------------WRNGETVKEDEQVNLADPVDMAASIAPT 144
             LE    R                       W +         VN         S+   
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLV-- 417

Query: 145 PESAPASILPAIPGSGLMLGSLSNEERQKLEEERE---------RLYQQLDEKDEEINQQ 195
            E  P     +IP        +  E + KLE E            + +  D  D      
Sbjct: 418 -EKQPKESTISIPS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 196 SQY-----AEKLKEQIMEQEELITTARR---DYEQLQGEMTRLTQENESAKEEVKEVLQA 247
            QY        LK   +E  E +T  R    D+  L+ ++ R      +A   +   LQ 
Sbjct: 470 DQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQ 526

Query: 248 LE---------EPT-----RTLLNFFRQSSPK 265
           L+         +P        +L+F  +    
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 27/265 (10%), Positives = 75/265 (28%), Gaps = 53/265 (20%)

Query: 9   LRNVISALADGNKTHI---PYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
            ++++S        HI       S   R+              +        +       
Sbjct: 42  PKSILS---KEEIDHIIMSKDAVSGTLRLF-----------WTLLSKQEEMVQ------- 80

Query: 66  DFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKE 125
            F      ++ V+ +N +      K    +    +  Y  + ++L      + + +   +
Sbjct: 81  KF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL------YNDNQVFAK 128

Query: 126 DEQVNLADPVDMAASIAPTPESAPASILPAIPGSG---LMLGSLSNEERQKLEEERERLY 182
              V+   P             A   ++  + GSG   + L    + + Q   +   +++
Sbjct: 129 Y-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIF 185

Query: 183 ----QQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238
               +  +  +  +    +   ++      + +  +  +     +Q E+ RL +      
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 239 -----EEV--KEVLQALEEPTRTLL 256
                  V   +   A     + LL
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILL 270

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 26/179 (14%)

Query: 82   EELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASI 141
            E    +   R  E+ K+     + K+ +L+ ++          +++       ++   ++
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKI----------DEQNKEYKSLLEKMNNL 954

Query: 142  APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEK 201
              T  +    +   +            E  +  EEE +    ++    EEI +  +   +
Sbjct: 955  EITYSTETEKLRSDV------------ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002

Query: 202  LKEQIMEQEELITTARRDYEQLQGEM----TRLTQENESAKEEVKEVLQALEEPTRTLL 256
             + +    EE     + + EQL  E+    T L  E E     + +  + + E     L
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 45/82 (54%)

Query: 169  EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
            E  Q+L+ E++++ QQ+ + +E++ ++    +KL+ + +  +  I     D   ++ +  
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 229  RLTQENESAKEEVKEVLQALEE 250
            +LT+E +  +E V ++   L E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAE 1022

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 20/187 (10%)

Query: 69   RRAKTIKNVVTVNEELTAEEWKRRYEKE-----KEKSSRYKGKLEKLELELSRWRNGETV 123
             R +       + E L   E +   E+E     + +  + + ++  LE +L         
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 124  KEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQ 183
             + E+V     +          E     +                +ER+ LEE    L  
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKL---------------TKERKLLEERVSDLTT 1018

Query: 184  QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
             L E++E+    ++   K +  I E E  +    +  ++L+    +L  E+    E++ E
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 244  VLQALEE 250
            +   + E
Sbjct: 1079 LQAQIAE 1085

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 32/82 (39%)

Query: 169  EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
            + ++KLE E   L++Q+ E   +I +      K +E++      +            ++ 
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

Query: 229  RLTQENESAKEEVKEVLQALEE 250
             L       +E+++    A  +
Sbjct: 1120 ELESHISDLQEDLESEKAARNK 1141

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 169  EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
             +  K EEE +    +L+++  + N   +   +L+  I + +E       D E  +    
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE-------DLESEKAARN 1140

Query: 229  RLTQENESAKEEVKEVLQALEE 250
            +  ++     EE++ +   LE+
Sbjct: 1141 KAEKQKRDLSEELEALKTELED 1162

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 11/80 (13%), Positives = 33/80 (41%), Gaps = 17/80 (21%)

Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD----YEQL 223
            +E + + + RE   ++L E D         ++ ++++  E+      A++D     ++ 
Sbjct: 81  TQEPESIRKWREEQRKRLQELDAA-------SKVMEQEWREK------AKKDLEEWNQRQ 127

Query: 224 QGEMTRLTQENESAKEEVKE 243
             ++ +    N  A +   +
Sbjct: 128 SEQVEKNKINNRIADKAFYQ 147

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 40/92 (43%)

Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQ 222
           + + ++E +Q ++  +         K   I+  +  + K+ E+IM+ E  I T       
Sbjct: 50  VENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRY 109

Query: 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254
           LQ       Q+  + KE+V ++    +EP + 
Sbjct: 110 LQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKD 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	99.96
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	99.94
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	99.94
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	99.94
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	99.93
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	99.93
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	99.93
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	99.93
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	99.92
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	99.92
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	99.92
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	99.92
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	99.91
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	99.91
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	99.91
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	99.91
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	99.91
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	99.91
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	99.91
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	99.91
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	99.9
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	99.9
3u06_A	412	Protein claret segregational; motor domain, stalk	99.9
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	99.9
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	99.9
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	99.9
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	99.9
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.74
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.18
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.47
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	95.33
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.17
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.11
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.04
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	94.78
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	94.6
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.99
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.95
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.91
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.85
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.71
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	93.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.69
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.52
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.46
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.32
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.17
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	93.13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.06
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.74
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	92.62
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	92.01
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.87
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.91
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.51
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.28
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	90.02
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	89.65
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	89.61
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.58
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.12
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.12
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.29
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	88.08
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	87.46
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.87
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.87
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.84
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.47
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.16
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	86.12
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	86.0
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.74
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	85.52
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	85.25
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.63
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	84.43
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.25
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.95
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.65
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.59
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	82.1
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.98
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	81.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	80.31
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.12

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=100.00  E-value=5.5e-37  Score=246.55  Aligned_cols=117  Identities=71%  Similarity=1.079  Sum_probs=114.7

Q ss_pred             chhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccccCc
Q psy5721           3 IFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNE   82 (290)
Q Consensus         3 N~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~n~   82 (290)
                      |+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||+||+.|++.|.+|.
T Consensus         1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~   80 (117)
T 3kin_B            1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL   80 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence            89999999999999998778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721          83 ELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN  119 (290)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~  119 (290)
                      +++++.|.++|+++.+++..|+..|+.|+.|+.+||+
T Consensus        81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~  117 (117)
T 3kin_B           81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN  117 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999984

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=100.00  E-value=4.5e-35  Score=228.50  Aligned_cols=97  Identities=73%  Similarity=1.058  Sum_probs=92.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      +||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||.||+.|++.|.+
T Consensus         3 ~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~~   82 (100)
T 2kin_B            3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSV   82 (100)
T ss_dssp             BSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEECC
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCccee
Confidence            59999999999999999986689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHH
Q psy5721          81 NEELTAEEWKRRYEKEK   97 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~   97 (290)
                      |.+++++.+.++|+++.
T Consensus        83 n~~~~~~~l~~~~~~e~   99 (100)
T 2kin_B           83 NLELTAEEWKKKYEKEK   99 (100)
T ss_dssp             EEECCHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHhh
Confidence            99999999988887663

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=99.96  E-value=1.3e-30  Score=246.80  Aligned_cols=105  Identities=87%  Similarity=1.191  Sum_probs=89.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||+++++.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus       260 ~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~  339 (365)
T 2y65_A          260 NINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV  339 (365)
T ss_dssp             -CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCccee
Confidence            49999999999999999987789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHHH
Q psy5721          81 NEELTAEEWKRRYEKEKEKSSRYKG  105 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~l~~  105 (290)
                      |.+++++.|.++|++++++++.|++
T Consensus       340 n~~~~~~~~~~~~~~e~~~~~~L~~  364 (365)
T 2y65_A          340 NEELTAEEWKRRYEKEKEKNARLKG  364 (365)
T ss_dssp             EEECCSHHHHHC-------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999888777764

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=99.94  E-value=6.4e-28  Score=228.63  Aligned_cols=83  Identities=42%  Similarity=0.591  Sum_probs=80.8

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus       255 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~  333 (369)
T 3cob_A          255 SINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK  333 (369)
T ss_dssp             HHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcc
Confidence            39999999999999999987 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccC
Q psy5721          81 NEEL   84 (290)
Q Consensus        81 n~~~   84 (290)
                      |...
T Consensus       334 n~~~  337 (369)
T 3cob_A          334 NVSS  337 (369)
T ss_dssp             CEEC
T ss_pred             cCCH
Confidence            9986

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=99.94  E-value=1.1e-27  Score=227.09  Aligned_cols=86  Identities=56%  Similarity=0.771  Sum_probs=77.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus       280 ~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~  359 (372)
T 3b6u_A          280 KINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRV  359 (372)
T ss_dssp             GCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhcccccee
Confidence            49999999999999999987789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCH
Q psy5721          81 NEELTA   86 (290)
Q Consensus        81 n~~~~~   86 (290)
                      |.++..
T Consensus       360 n~~~~~  365 (372)
T 3b6u_A          360 NEDPKD  365 (372)
T ss_dssp             CC----
T ss_pred             cCChHH
Confidence            998654

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.7e-27  Score=226.72  Aligned_cols=88  Identities=38%  Similarity=0.486  Sum_probs=72.6

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus       275 ~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~  353 (388)
T 3bfn_A          275 AINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFT  353 (388)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-----
T ss_pred             HhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcc
Confidence            59999999999999999987 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHH
Q psy5721          81 NEELTAEEW   89 (290)
Q Consensus        81 n~~~~~~~~   89 (290)
                      |..+++..+
T Consensus       354 n~~~~~~~l  362 (388)
T 3bfn_A          354 NESLQPHAL  362 (388)
T ss_dssp             ---------
T ss_pred             cCCCCHHHH
Confidence            999887554

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=99.93  E-value=2.8e-27  Score=223.29  Aligned_cols=87  Identities=62%  Similarity=0.878  Sum_probs=83.6

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus       257 ~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~v  336 (355)
T 1goj_A          257 KINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKV  336 (355)
T ss_dssp             GGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCC
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCcee
Confidence            49999999999999999987789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHH
Q psy5721          81 NEELTAE   87 (290)
Q Consensus        81 n~~~~~~   87 (290)
                      |.++++.
T Consensus       337 n~~~~~~  343 (355)
T 1goj_A          337 NAELSPA  343 (355)
T ss_dssp             CSSSSCS
T ss_pred             CCCCCHH
Confidence            9988763

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=99.93  E-value=4.2e-27  Score=222.51  Aligned_cols=81  Identities=52%  Similarity=0.675  Sum_probs=76.4

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus       278 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~v  356 (359)
T 1x88_A          278 NINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV  356 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred             hhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCccee
Confidence            59999999999999999986 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc
Q psy5721          81 NE   82 (290)
Q Consensus        81 n~   82 (290)
                      |.
T Consensus       357 n~  358 (359)
T 1x88_A          357 NQ  358 (359)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=99.93  E-value=4.7e-27  Score=221.37  Aligned_cols=84  Identities=54%  Similarity=0.685  Sum_probs=81.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||.+++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus       263 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~  341 (350)
T 2vvg_A          263 KINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRI  341 (350)
T ss_dssp             CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred             HHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccccee
Confidence            49999999999999999987 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCC
Q psy5721          81 NEELT   85 (290)
Q Consensus        81 n~~~~   85 (290)
                      |.++.
T Consensus       342 n~~~~  346 (350)
T 2vvg_A          342 NEDPK  346 (350)
T ss_dssp             CBSCT
T ss_pred             cCCch
Confidence            99765

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=99.93  E-value=3.1e-27  Score=224.42  Aligned_cols=84  Identities=49%  Similarity=0.647  Sum_probs=80.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus       289 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~v  367 (373)
T 2wbe_C          289 NINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEV  367 (373)
T ss_dssp             --CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccccee
Confidence            49999999999999999986 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCC
Q psy5721          81 NEELT   85 (290)
Q Consensus        81 n~~~~   85 (290)
                      |..++
T Consensus       368 N~~~s  372 (373)
T 2wbe_C          368 NQKLT  372 (373)
T ss_dssp             CEECC
T ss_pred             ccccC
Confidence            99865

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=99.92  E-value=2.8e-26  Score=216.10  Aligned_cols=84  Identities=48%  Similarity=0.538  Sum_probs=78.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCC-CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNK-THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~-~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      .||+||++||+||.||++++. .||||||||||+||+|+|||||+|+||+||+|+  +++||++||+||.||+.|+|.|.
T Consensus       256 ~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~  333 (349)
T 1t5c_A          256 NINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPY  333 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCce
Confidence            599999999999999999763 699999999999999999999999999999997  58999999999999999999999


Q ss_pred             cCccCCH
Q psy5721          80 VNEELTA   86 (290)
Q Consensus        80 ~n~~~~~   86 (290)
                      +|...++
T Consensus       334 vn~~~~~  340 (349)
T 1t5c_A          334 VNEVSTD  340 (349)
T ss_dssp             CCEEC--
T ss_pred             eccCCCC
Confidence            9998765

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=99.92  E-value=2.8e-26  Score=216.82  Aligned_cols=83  Identities=28%  Similarity=0.384  Sum_probs=70.1

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||..++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.+..
T Consensus       259 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~  337 (360)
T 1ry6_A          259 NINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLE  337 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCccc
Confidence            39999999999999999876 89999999999999999999999999999999999999999999999999999996665


Q ss_pred             CccC
Q psy5721          81 NEEL   84 (290)
Q Consensus        81 n~~~   84 (290)
                      +...
T Consensus       338 ~~~~  341 (360)
T 1ry6_A          338 GKPI  341 (360)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            5443

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.6e-26  Score=216.02  Aligned_cols=74  Identities=34%  Similarity=0.465  Sum_probs=67.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus       286 ~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          286 YINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence            59999999999999999987789999999999999999999999999999999999999999999999999976

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=99.92  E-value=2.8e-26  Score=217.41  Aligned_cols=83  Identities=48%  Similarity=0.633  Sum_probs=66.2

Q ss_pred             CcchhHhHHHHHHHHHHcC-----------CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhh
Q psy5721           1 MNIFACGALRNVISALADG-----------NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGR   69 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-----------~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~   69 (290)
                      .||+||++||+||.||+++           +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.
T Consensus       270 ~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~  349 (366)
T 2zfi_A          270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD  349 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHH
Confidence            3999999999999999873           24799999999999999999999999999999999999999999999999


Q ss_pred             hccccccccccCcc
Q psy5721          70 RAKTIKNVVTVNEE   83 (290)
Q Consensus        70 rak~i~~~~~~n~~   83 (290)
                      ||+.|++.|.++..
T Consensus       350 rak~I~~~~~~~~~  363 (366)
T 2zfi_A          350 RAKQIRNTVSVNHH  363 (366)
T ss_dssp             HTC-----------
T ss_pred             HHhhccCCCCCCCC
Confidence            99999999988753

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=99.91  E-value=1.2e-25  Score=209.91  Aligned_cols=73  Identities=73%  Similarity=1.026  Sum_probs=70.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||.|
T Consensus       253 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I  325 (325)
T 1bg2_A          253 NINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  325 (325)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence            59999999999999999986 89999999999999999999999999999999999999999999999999976

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=99.91  E-value=1.1e-25  Score=217.79  Aligned_cols=80  Identities=44%  Similarity=0.633  Sum_probs=73.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCC---------------------CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChH
Q psy5721           1 MNIFACGALRNVISALADGNK---------------------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNES   59 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~---------------------~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~   59 (290)
                      .||+||++||+||.||++++.                     .||||||||||+||+|+|||||+|+||+||||+  +++
T Consensus       321 ~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~  398 (443)
T 2owm_A          321 NINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYD  398 (443)
T ss_dssp             CSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHH
T ss_pred             hhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHH
Confidence            599999999999999987542                     499999999999999999999999999999997  599


Q ss_pred             hhhhhhhhhhhccccccccccCc
Q psy5721          60 ETKSTLDFGRRAKTIKNVVTVNE   82 (290)
Q Consensus        60 EtlstL~fa~rak~i~~~~~~n~   82 (290)
                      ||++||+||.||+.|++.|.+|.
T Consensus       399 ETlsTLrfA~rak~I~n~~~vN~  421 (443)
T 2owm_A          399 ETLSTLRYADQAKRIRTRAVVNQ  421 (443)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCCC
T ss_pred             HHHHHHHHHHHHhhccccceecc
Confidence            99999999999999999999998

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=99.91  E-value=1.6e-25  Score=210.74  Aligned_cols=79  Identities=35%  Similarity=0.489  Sum_probs=73.1

Q ss_pred             CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721           1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV   78 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~   78 (290)
                      .||+||++||+||.||+++.  ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+..+
T Consensus       266 ~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~  345 (347)
T 1f9v_A          266 NINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS  345 (347)
T ss_dssp             HHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred             HHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence            39999999999999999865  4799999999999999999999999999999999999999999999999999998765


Q ss_pred             c
Q psy5721          79 T   79 (290)
Q Consensus        79 ~   79 (290)
                      .
T Consensus       346 r  346 (347)
T 1f9v_A          346 R  346 (347)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=99.91  E-value=2.8e-25  Score=209.38  Aligned_cols=78  Identities=32%  Similarity=0.391  Sum_probs=69.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721           1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV   78 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~   78 (290)
                      .||+||++||+||.||+++..  .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..+
T Consensus       269 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~  348 (349)
T 3t0q_A          269 NINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK  348 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred             hhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence            399999999999999998653  699999999999999999999999999999999999999999999999999998654

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=2.3e-25  Score=210.30  Aligned_cols=74  Identities=50%  Similarity=0.674  Sum_probs=63.7

Q ss_pred             CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++||+||.||++++  ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||.|
T Consensus       280 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          280 NINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             --CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            49999999999999999864  369999999999999999999999999999999999999999999999999976

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=99.91  E-value=3e-25  Score=207.65  Aligned_cols=74  Identities=38%  Similarity=0.588  Sum_probs=69.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK   75 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~   75 (290)
                      .||+||++||+||.||++++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+
T Consensus       256 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~  329 (330)
T 2h58_A          256 HINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred             HhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence            39999999999999999886 899999999999999999999999999999999999999999999999999885

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=99.91  E-value=3.9e-25  Score=209.96  Aligned_cols=73  Identities=37%  Similarity=0.528  Sum_probs=65.8

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|++++
T Consensus       304 ~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~  376 (376)
T 2rep_A          304 AINSSLSTLGLVIMALSNKE-SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC  376 (376)
T ss_dssp             ----CHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred             HhhHHHHHHHHHHHHHhcCC-CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence            49999999999999999976 89999999999999999999999999999999999999999999999999764

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=99.90  E-value=4.7e-25  Score=207.29  Aligned_cols=77  Identities=39%  Similarity=0.488  Sum_probs=73.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV   78 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~   78 (290)
                      .||+||++||+||.||+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.....+
T Consensus       263 ~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~  339 (344)
T 3dc4_A          263 NINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEH  339 (344)
T ss_dssp             CSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence            49999999999999999987 899999999999999999999999999999999999999999999999999776543

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5e-25  Score=211.21  Aligned_cols=79  Identities=35%  Similarity=0.484  Sum_probs=70.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721           1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV   78 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~   78 (290)
                      .||+||++||+||.||+++..  .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..+
T Consensus       322 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~  401 (403)
T 4etp_A          322 NINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS  401 (403)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence            399999999999999998653  599999999999999999999999999999999999999999999999999998765


Q ss_pred             c
Q psy5721          79 T   79 (290)
Q Consensus        79 ~   79 (290)
                      .
T Consensus       402 r  402 (403)
T 4etp_A          402 R  402 (403)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=99.90  E-value=5.5e-25  Score=211.25  Aligned_cols=76  Identities=38%  Similarity=0.470  Sum_probs=72.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV   77 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~   77 (290)
                      .||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..
T Consensus       310 ~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~  385 (412)
T 3u06_A          310 NINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT  385 (412)
T ss_dssp             TTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence            59999999999999999976 89999999999999999999999999999999999999999999999999999854

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=99.90  E-value=5.6e-25  Score=209.34  Aligned_cols=76  Identities=34%  Similarity=0.467  Sum_probs=69.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhh-cCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV   77 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~-l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~   77 (290)
                      .||+||++||+||.||+++. .||||||||||+||+|+ +||||+|+||+||||+..+++||++||+||.||+.|++.
T Consensus       309 ~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~  385 (387)
T 2heh_A          309 EINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH  385 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             HHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence            39999999999999999876 89999999999999999 599999999999999999999999999999999999764

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=99.90  E-value=1e-24  Score=205.11  Aligned_cols=72  Identities=54%  Similarity=0.754  Sum_probs=68.5

Q ss_pred             CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721           1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK   72 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak   72 (290)
                      .||+||++||+||.||++++  ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||
T Consensus       271 ~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          271 QINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ  344 (344)
T ss_dssp             CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             eechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence            59999999999999999854  3699999999999999999999999999999999999999999999999996

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=99.90  E-value=7.3e-25  Score=209.84  Aligned_cols=78  Identities=33%  Similarity=0.452  Sum_probs=66.0

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhh-cCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT   79 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~-l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~   79 (290)
                      .||+||++||+||.||+.+. .||||||||||+||+|+ +||||+|+||+||||+..+++||++||+||.||+.|...|.
T Consensus       329 ~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~  407 (410)
T 1v8k_A          329 EINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH  407 (410)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred             HHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence            39999999999999999876 89999999999999999 59999999999999999999999999999999999876553

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=99.90  E-value=1e-24  Score=205.80  Aligned_cols=73  Identities=47%  Similarity=0.587  Sum_probs=68.0

Q ss_pred             CcchhHhHHHHHHHHHHcC-----CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccc
Q psy5721           1 MNIFACGALRNVISALADG-----NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKT   73 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-----~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~   73 (290)
                      .||+||++||+||.||+++     +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+.
T Consensus       272 ~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          272 NINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             HhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence            3999999999999999873     347999999999999999999999999999999999999999999999999974

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=99.89  E-value=3.3e-24  Score=218.96  Aligned_cols=75  Identities=33%  Similarity=0.527  Sum_probs=70.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK   75 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~   75 (290)
                      .||+||++||+||.+|+.+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+
T Consensus       638 ~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~  712 (715)
T 4h1g_A          638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR  712 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence            399999999999999998777899999999999999999999999999999999999999999999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.74  E-value=0.064  Score=52.59  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      +.+.+.+..+.+..+.+..++....+.+.+.+++++..+++...+++..+..+..+..+++|++..+++++++++++++
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5566666677777777777777777777777777777777777777777777777788888888888888877777654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.18  E-value=0.5  Score=40.13  Aligned_cols=77  Identities=18%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      ++...+++|..+......++..+.+.+.....+++.......-+..+...++.+=+++--|+.+|+|+...-+..||
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QR  165 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQR  165 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666667777777777777777777777777777777777777777777777788777765555554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.47  E-value=0.26  Score=39.83  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         211 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       211 e~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      ..+.++...++.+..++..++.++..+..++.+|+.++++
T Consensus        96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444444555555555555555555443

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=95.33  E-value=0.16  Score=38.87  Aligned_cols=81  Identities=25%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT  254 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~  254 (290)
                      +++..+-.-...+.|.+-+.+.=++.-|+..+.++++.++.+.++......++.++......++.++..++.+|.+...-
T Consensus         8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L   87 (103)
T 4h22_A            8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM   87 (103)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455666777778888899999999999999999999999999999999999999999999999998876654


Q ss_pred             h
Q psy5721         255 L  255 (290)
Q Consensus       255 l  255 (290)
                      |
T Consensus        88 I   88 (103)
T 4h22_A           88 L   88 (103)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.17  E-value=1.3  Score=37.53  Aligned_cols=11  Identities=0%  Similarity=0.021  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q psy5721         100 SSRYKGKLEKL  110 (290)
Q Consensus       100 ~~~l~~~i~~L  110 (290)
                      +..+...+..+
T Consensus        15 ~~~~~~~~~~l   25 (284)
T 1c1g_A           15 KENALDRADEA   25 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.11  E-value=0.28  Score=39.60  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE  235 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~  235 (290)
                      .-.+.++...|.+++.++++++..+...+..++.++......+..+.+++..++.++.+|+.++.
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667777777777777777666666666666666666666666666666666666655544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.04  E-value=1  Score=35.72  Aligned_cols=85  Identities=14%  Similarity=0.252  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  249 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le  249 (290)
                      ....+..+.+.|..+|..-...+......+..|...-.+.+..+..+...++..+.....|..+-..+.+++.+|...++
T Consensus        42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le  121 (129)
T 2fxo_A           42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID  121 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666766666555555555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhh
Q psy5721         250 EPTRT  254 (290)
Q Consensus       250 E~~~~  254 (290)
                      ++..+
T Consensus       122 d~e~~  126 (129)
T 2fxo_A          122 DLELT  126 (129)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            65543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=94.78  E-value=1.2  Score=37.77  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      .++..+..+..++.+....++.+...++..+.++......   ....+..++.++..++..++.++..+++|+++-+++.
T Consensus        46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE  122 (189)
T 2v71_A           46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE  122 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3333444444444444444444444444444333222221   1223666677777777777777777777777766665


Q ss_pred             hh
Q psy5721         253 RT  254 (290)
Q Consensus       253 ~~  254 (290)
                      ..
T Consensus       123 r~  124 (189)
T 2v71_A          123 RA  124 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=94.60  E-value=1.2  Score=34.59  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      .+..+-++-|.+.+.+-..-++.+..|+..|.......   .+.++.++.++..|..+++.+..++..|..+.+.+...+
T Consensus        32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence            34444445556666666666666777766554333222   445777777777777777777777777777777777777


Q ss_pred             hhhhhccCC
Q psy5721         256 LNFFRQSSP  264 (290)
Q Consensus       256 ~~~~~~~~~  264 (290)
                      -...+.+++
T Consensus       109 ~~~~~~~~~  117 (121)
T 3mq7_A          109 ADKKYYPSS  117 (121)
T ss_dssp             C--------
T ss_pred             hhcccCccc
Confidence            666664444

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.99  E-value=1.5  Score=33.26  Aligned_cols=66  Identities=9%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK  238 (290)
Q Consensus       173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~  238 (290)
                      .+.+++..|....+.-.+...+....+..+.......+..+.++.+.+..++.++..++..+..+.
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~   71 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE   71 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555554444444444444444444444444444444444444444444444443333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.95  E-value=0.9  Score=44.30  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      +.++.+..+++...+..++.+.++.+++..+.+.+-.+.
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333344444445455555555555555555544444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.91  E-value=0.39  Score=51.01  Aligned_cols=57  Identities=14%  Similarity=0.119  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         196 SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR----LTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       196 ~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~----lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ...+..+.+++.+.++.+..+.++.+.++++...    |+..+..+++++..|+++++++.
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444333322    22333444455555555555444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.85  E-value=1  Score=39.70  Aligned_cols=7  Identities=29%  Similarity=0.577  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q psy5721         106 KLEKLEL  112 (290)
Q Consensus       106 ~i~~L~~  112 (290)
                      +|..+..
T Consensus        19 ~i~~l~~   25 (256)
T 3na7_A           19 EIDSLEP   25 (256)
T ss_dssp             HHHHTHH
T ss_pred             HHHHHHH
Confidence            3333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.71  E-value=1.5  Score=33.20  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE  221 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~  221 (290)
                      ..+.+++..|..++...+.++..+...+.+-+..-..-+.....+..+++
T Consensus         8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE   57 (97)
T 2eqb_B            8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE   57 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666665554444444333333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=93.71  E-value=1.4  Score=35.93  Aligned_cols=64  Identities=13%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721         191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT  254 (290)
Q Consensus       191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~  254 (290)
                      .|..+..++..++.++.+.++.+....+.++.++.++..|+.++..++++++.++.+-.++...
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R  132 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555566666666666666666666666666666666666666666666655555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.69  E-value=0.73  Score=38.34  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      +++..|+.+|.+..+.+..-.....++++...+.....+.++..+..|+..+..|+..-+++.+++..|+.+|
T Consensus         6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L   78 (168)
T 3o0z_A            6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL   78 (168)
T ss_dssp             ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555544444444444444444433333333333333333333333333333333333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.52  E-value=2.5  Score=37.17  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      ..+..++..+...+...+++|......++.++..+...+..+
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444433333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.46  E-value=1.6  Score=31.71  Aligned_cols=57  Identities=19%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         199 AEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       199 ~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      .+.+..++...+......+.++..++.++..++.+++.+.+.+...+..|++.....
T Consensus        22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~   78 (81)
T 1ic2_A           22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444555555556666677777777777788888888888888888888776543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.32  E-value=2.2  Score=33.03  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN  257 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~  257 (290)
                      .+.....+|..+......+...+.+.+.....+++.......-+..+...+..+=+++--|+.+|+|+....+.
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~  109 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS  109 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444555666666666677777777777777777777777777778888888888888888889888765544

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.17  E-value=1.8  Score=31.61  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         198 YAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  248 (290)
Q Consensus       198 ~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L  248 (290)
                      +++.||.+..........++...+.+..++.+|+.|..+-.++++.|.-.+
T Consensus        28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A           28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344433333333333333334455555556666666666655555444

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=93.13  E-value=1.1  Score=35.17  Aligned_cols=70  Identities=23%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                      +++|..|..+...++.++.++...   .......+..|...+..|..+++..+........+.+.+.+.+..+
T Consensus        11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666555433   2333445555555666666666555555444444444444444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.06  E-value=1.4  Score=46.89  Aligned_cols=66  Identities=15%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      .+...++++..+...+.++.++....++.+..+.   +.+++++..|..++..+++++.++...+.+.+
T Consensus       985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555554444444444443333   34455566666666666666666664444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.74  E-value=2.7  Score=32.40  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE  204 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~  204 (290)
                      +...|..+.......|..|..+|..+++.+.+.+.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555566666666666555555554433

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=92.62  E-value=0.55  Score=39.68  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh----
Q psy5721         184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF----  259 (290)
Q Consensus       184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~----  259 (290)
                      +++..+..|..+..++..|.+++......+..+++++..++.+....+..+....+.+.-...-++.+.--++...    
T Consensus        14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~V~~~~ed~   93 (190)
T 4emc_A           14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVRVHKSYEDD   93 (190)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcEEEEEEEcC
Confidence            3333444444444444444444444444444444444444444444444443333444444444555543333322    


Q ss_pred             -------hccCCCC----cchhhhhhccCCC
Q psy5721         260 -------RQSSPKG----TLLYNHYLLGWPN  279 (290)
Q Consensus       260 -------~~~~~~~----~~~~~~~~~~~~~  279 (290)
                             .|++..|    +-+..||-||.+.
T Consensus        94 ~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k  124 (190)
T 4emc_A           94 SGLWFDISQGTHSGGSSDDYSIMDYKLGFVK  124 (190)
T ss_dssp             SCEEEEEEESCCC-----CCCCCCEEEEEC-
T ss_pred             CCeEEEEEecCCCCCcCCcceEEEEEEeecc
Confidence                   6777666    3455799998876

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=92.01  E-value=0.63  Score=33.28  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE  221 (290)
Q Consensus       178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~  221 (290)
                      +..|+..|..++++|.+....+..+..++.+.+..+..++.+..
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD   64 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777766666666666555555555544444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.87  E-value=0.96  Score=34.22  Aligned_cols=59  Identities=22%  Similarity=0.371  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN  234 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~  234 (290)
                      ...+.++.++...+.+......++.+|...+.+........+.....++.++..|.+.+
T Consensus         5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B            5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667888888888888888888888888888888888888888888888888887755

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.16  E-value=3.3  Score=30.19  Aligned_cols=66  Identities=18%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      ++..+..|.+.-..+.-|+-++.+.+++...+..+++.+...-..+..+++.++++...-+..|..
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555556666665555555555555555555555555555555555544443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.15  E-value=1.5  Score=46.86  Aligned_cols=15  Identities=20%  Similarity=0.419  Sum_probs=12.2

Q ss_pred             CCcceEEEeeCCCCC
Q psy5721          42 NARTTIIICCSPASF   56 (290)
Q Consensus        42 ~~~t~mi~~vsp~~~   56 (290)
                      .+...+|-||-|...
T Consensus       675 ~t~phfvRCIkPN~~  689 (1184)
T 1i84_S          675 NTNPNFVRCIIPNHE  689 (1184)
T ss_dssp             TSEEEECCEECCCSS
T ss_pred             hcCCCceeeeCCCCc
Confidence            578889999999754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.91  E-value=1.6  Score=41.53  Aligned_cols=49  Identities=29%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      +.....++.+..+++.+.+.++++.++.++.++..++.++.+.+.++-+
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (487)
T 3oja_A          429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV  477 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence            3334455555666666666677777777777777777777777666554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.51  E-value=2.4  Score=49.91  Aligned_cols=15  Identities=20%  Similarity=0.343  Sum_probs=10.6

Q ss_pred             CcceEEEeeCCCCCC
Q psy5721          43 ARTTIIICCSPASFN   57 (290)
Q Consensus        43 ~~t~mi~~vsp~~~~   57 (290)
                      .+.-+|.|+||....
T Consensus      1776 ~NLHvVL~mSPvg~~ 1790 (3245)
T 3vkg_A         1776 RNLHVVFTMNPASPD 1790 (3245)
T ss_dssp             TTCCEEEEECTTSTT
T ss_pred             HcCEEEEEECCCCHH
Confidence            366778888887544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=90.28  E-value=4.7  Score=30.44  Aligned_cols=41  Identities=20%  Similarity=0.174  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         210 EELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       210 ee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      +......+.++..|+.++..+..+++.+.+.+.+..+.|++
T Consensus        36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A           36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=90.02  E-value=2.1  Score=30.12  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT  231 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq  231 (290)
                      ....|..+++++++||..+...+..++.++...-+....++.+....+.....|.
T Consensus         4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~   58 (74)
T 2q6q_A            4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE   58 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            3456888999999999999999999988887666665555555555444444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=89.65  E-value=5.2  Score=29.96  Aligned_cols=73  Identities=21%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE---ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe---e~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ..|..+|...++-+......+.+|++.+..++   +.+.-++..+..+..+...=.+--+.+.++..+|+..+.-+
T Consensus         5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l   80 (94)
T 3jsv_C            5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL   80 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34555566666666555566666666555554   33344445555555544433333333444444444444333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.61  E-value=1.2  Score=35.75  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q psy5721         181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE---------------NESAKEEVKEVL  245 (290)
Q Consensus       181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E---------------~~~~~~e~kel~  245 (290)
                      +...++.....+......+.+|...+.+....-...+.....++.++..|.+.               -..++.++..|.
T Consensus        30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~  109 (135)
T 2e7s_A           30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLT  109 (135)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344443333333334444444444433333344444444444444444432               366788889999


Q ss_pred             HHHhHHHhhhhhhhhccCCCCcchh
Q psy5721         246 QALEEPTRTLLNFFRQSSPKGTLLY  270 (290)
Q Consensus       246 q~LeE~~~~l~~~~~~~~~~~~~~~  270 (290)
                      .++.++...|..++-|..-=+.+|+
T Consensus       110 ~ql~e~e~ll~~lq~QL~~LK~v~~  134 (135)
T 2e7s_A          110 EQLREKDMLLDTLTLQLKNLKKVMH  134 (135)
T ss_dssp             HTTTHHHHCC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999888888877666654

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.58  E-value=5.9  Score=30.61  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ..|+.++..++...+.+...+++|+++-+++.
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE   69 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLE   69 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            33444444444444555555555554444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.45  E-value=6.6  Score=30.89  Aligned_cols=47  Identities=6%  Similarity=0.075  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721         214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR  260 (290)
Q Consensus       214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~  260 (290)
                      ..++..+..+...+......+..+....+.+++.+.++...|.++..
T Consensus        79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555556666666666777888888888888888888877653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.12  E-value=2.8  Score=39.87  Aligned_cols=43  Identities=9%  Similarity=0.022  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721         213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL  255 (290)
Q Consensus       213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l  255 (290)
                      ....+.+.++...+....+.+.+.++++...++..+++....+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (487)
T 3oja_A          423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL  465 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence            3333333333444444444444444444444444444444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.12  E-value=5.8  Score=29.83  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ++..++.++..++.+++.+.+.+......|++.
T Consensus        45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~   77 (101)
T 3u59_A           45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.29  E-value=5.6  Score=28.66  Aligned_cols=65  Identities=11%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE  240 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e  240 (290)
                      +++..|....+.-..........+..........+..+.++.+.+..++.++.+.+..+..+...
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k   70 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444333

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=88.08  E-value=7.1  Score=29.56  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI---------------TTARRDYEQLQGEMTRLTQENES  236 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~---------------~~~~~e~~~l~~el~~lq~E~~~  236 (290)
                      +....+...+++++......+..+...+..+..-+.+.+..-               .....-...++..+..+..+...
T Consensus         9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~   88 (117)
T 2zqm_A            9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNA   88 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555444444333322221110               11223333444555555555566


Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721         237 AKEEVKEVLQALEEPTRTLLNFFRQ  261 (290)
Q Consensus       237 ~~~e~kel~q~LeE~~~~l~~~~~~  261 (290)
                      +......+...++++...|-.++.+
T Consensus        89 le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           89 LERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            6666666666666666666666644

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=87.46  E-value=3  Score=30.32  Aligned_cols=46  Identities=17%  Similarity=0.206  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721         207 MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT  252 (290)
Q Consensus       207 ~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~  252 (290)
                      ++.+.....++..+..++..+..-+.+-+.++.+++.+.+.|+-+-
T Consensus        16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI   61 (79)
T 3cvf_A           16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL   61 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3333333333333344444444444444444444444444433333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.87  E-value=11  Score=30.75  Aligned_cols=42  Identities=10%  Similarity=0.095  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721         218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF  259 (290)
Q Consensus       218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~  259 (290)
                      .+...++.+...|+.++...+.-+..++.+|.+++.-+..+.
T Consensus       108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~  149 (154)
T 2ocy_A          108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD  149 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444445555555555555555555555554444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.87  E-value=11  Score=30.58  Aligned_cols=52  Identities=19%  Similarity=0.106  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         192 INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE  243 (290)
Q Consensus       192 i~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ke  243 (290)
                      +..+...+..+...+......+..+..++..++-++..++..+..+++|++.
T Consensus        77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~  128 (152)
T 3a7p_A           77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ  128 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333334444444444444444444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.84  E-value=12  Score=30.93  Aligned_cols=83  Identities=13%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy5721         167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYA-------EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK-  238 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~-------~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~-  238 (290)
                      ....+..++++...|+.+|..-...-.+....+       ..|..++............++..+.+.+..+..+..... 
T Consensus        60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ei  139 (168)
T 3o0z_A           60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEI  139 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            345566777777888877766554444444433       444444444444455555555666666666666655555 


Q ss_pred             ---HHHHHHHHHHh
Q psy5721         239 ---EEVKEVLQALE  249 (290)
Q Consensus       239 ---~e~kel~q~Le  249 (290)
                         -++|-+++.++
T Consensus       140 d~~~eLKalQ~~~e  153 (168)
T 3o0z_A          140 DLNYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence               55666666554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.47  E-value=8.6  Score=28.85  Aligned_cols=28  Identities=11%  Similarity=0.160  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         207 MEQEELITTARRDYEQLQGEMTRLTQEN  234 (290)
Q Consensus       207 ~~qee~~~~~~~e~~~l~~el~~lq~E~  234 (290)
                      ...+..+.++.+.+..++.++...+..+
T Consensus        40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l   67 (101)
T 3u59_A           40 KQLEEEQQGLQKKLKGTEDEVEKYSESV   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.16  E-value=9.9  Score=29.22  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE  211 (290)
Q Consensus       177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee  211 (290)
                      ++..|..+|...++.+......+.++++++...+.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555544433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=86.12  E-value=13  Score=30.42  Aligned_cols=50  Identities=24%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE  221 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~  221 (290)
                      ..|++++..|..+|.+-+.....-...+.+|...+...+..+......+.
T Consensus        73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~  122 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK  122 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555544444444444444444444444443333333

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=86.00  E-value=7.2  Score=27.53  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQ  197 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~  197 (290)
                      ..+..|+..|..||.+|..+..
T Consensus        18 ~~l~~Lr~eL~~Ke~eI~~L~e   39 (75)
T 3a7o_A           18 NTLAILQKELKSKEQEIRRLKE   39 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3667788888888888865543

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.74  E-value=9.3  Score=28.56  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI  206 (290)
Q Consensus       170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql  206 (290)
                      +...+..+.+.|.+.|.+.+.+-..+...+..+..+.
T Consensus        12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~   48 (96)
T 3q8t_A           12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA   48 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3344444555555555544444444444444444333

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=85.52  E-value=3.6  Score=29.33  Aligned_cols=17  Identities=18%  Similarity=0.202  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5721         230 LTQENESAKEEVKEVLQ  246 (290)
Q Consensus       230 lq~E~~~~~~e~kel~q  246 (290)
                      +..+++..+.++++|+.
T Consensus        45 LEk~L~ekd~eI~~Lqs   61 (72)
T 3nmd_A           45 LELELDQKDELIQMLQN   61 (72)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=85.25  E-value=8.2  Score=27.47  Aligned_cols=54  Identities=13%  Similarity=0.236  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721         205 QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF  258 (290)
Q Consensus       205 ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~  258 (290)
                      ++++.+.....++..+..++..+..-+.+-+.++.+++.+.+.|+-+-..|.++
T Consensus         8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el   61 (72)
T 3cve_A            8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL   61 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            334444444444444444444444444444444455555555444444444433

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=84.43  E-value=11  Score=28.34  Aligned_cols=37  Identities=5%  Similarity=0.038  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721         220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL  256 (290)
Q Consensus       220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~  256 (290)
                      +...+.++..++.++..++.++..+..+++++...+-
T Consensus        66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555544443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.25  E-value=13  Score=29.03  Aligned_cols=64  Identities=14%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV  241 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~  241 (290)
                      ..++..++..+.....+|..+......|...+.+.+.....   ....++..+..+..++..++.+.
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~   98 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDM   98 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHH
Confidence            45566667777777777777777777776666665554322   23333344444444444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.95  E-value=14  Score=29.02  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI  213 (290)
Q Consensus       175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~  213 (290)
                      ..++..++..++....+|..+......|...+.+.+...
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~   75 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY   75 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666666665555543

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.65  E-value=13  Score=27.76  Aligned_cols=87  Identities=14%  Similarity=0.182  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP  251 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~  251 (290)
                      ..+..+...+...=...-.++..+...-..+..++...+.....+..+-..+-.+.+.++.++-....+...+..++.=.
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~   86 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA   86 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555544444455555555555555555555555544444444444444444444444555555555444444


Q ss_pred             Hhhhhhh
Q psy5721         252 TRTLLNF  258 (290)
Q Consensus       252 ~~~l~~~  258 (290)
                      ..+|.-+
T Consensus        87 ~~qLdkL   93 (96)
T 3q8t_A           87 QMQLDKL   93 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444433

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.59  E-value=6.1  Score=25.00  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVK  242 (290)
Q Consensus       208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k  242 (290)
                      +.+.....++..+..|++.+..|+.|+..+++-++
T Consensus         7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A            7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            33444445555666677777778888877776543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=82.10  E-value=17  Score=28.81  Aligned_cols=64  Identities=17%  Similarity=0.301  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE  235 (290)
Q Consensus       172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~  235 (290)
                      ..++.-...+..++++-..++...-.++..-+.+..+.........+++.++..++..+|+.++
T Consensus        14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~   77 (167)
T 4gkw_A           14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence            4566666667777777777776666666666555555555555555555555555555555443

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.98  E-value=3.6  Score=25.12  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721         176 EERERLYQQLDEKDEEINQQSQYAEKLK  203 (290)
Q Consensus       176 e~~~~L~~~L~ekd~ei~~~~~~~~klk  203 (290)
                      .+.++|+..+.+|+++|..+++....|.
T Consensus         7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            7 KENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4567777788888888877666655543

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=81.93  E-value=12  Score=27.04  Aligned_cols=19  Identities=11%  Similarity=0.242  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5721         228 TRLTQENESAKEEVKEVLQ  246 (290)
Q Consensus       228 ~~lq~E~~~~~~e~kel~q  246 (290)
                      ..||.++.....+++.|+.
T Consensus        57 ~~Lq~qLe~kd~ei~rL~~   75 (81)
T 3qh9_A           57 AQLQEQVALKDAEIERLHS   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHH
Confidence            3334444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=80.31  E-value=1e+02  Score=36.61  Aligned_cols=82  Identities=15%  Similarity=0.093  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721         171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  250 (290)
Q Consensus       171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE  250 (290)
                      ...++++....+..|.++++++..+...+..|+.+......+...++.+.+..+.++.+-..-...+..|...=.+..++
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence            33444444555555555555555555555555555444444444444444444444444444334444444443334444


Q ss_pred             HH
Q psy5721         251 PT  252 (290)
Q Consensus       251 ~~  252 (290)
                      +.
T Consensus      2096 l~ 2097 (3245)
T 3vkg_A         2096 FN 2097 (3245)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.12  E-value=15  Score=26.89  Aligned_cols=21  Identities=14%  Similarity=0.314  Sum_probs=9.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHH
Q psy5721         167 SNEERQKLEEERERLYQQLDE  187 (290)
Q Consensus       167 ~~~e~~~l~e~~~~L~~~L~e  187 (290)
                      .+.+.....+++..+...+..
T Consensus        12 ~eeEm~~~eeel~~lke~l~k   32 (89)
T 3bas_A           12 QEEEMKEQLKQMDKMKEDLAK   32 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	5e-31
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-30
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	1e-28
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	2e-28
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	7e-27
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	3e-25
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	3e-25
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	4e-25
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-24
d1bjta_	760	e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra	0.002

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  116 bits (291), Expect = 5e-31
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL  VI+AL DG  +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 263 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 322

Query: 68  GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEK 99
           G RAK+IKN   VN EL+  E K+   K K +
Sbjct: 323 GMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ 354

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  115 bits (287), Expect = 2e-30
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 4   FACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESET 61
            +   L +VI AL   +  K HIP+R+SKLT +LQ SL G+++T + +  SP+S + +ET
Sbjct: 267 KSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 326

Query: 62  KSTLDFGRRAKTIKNV 77
            ++L F  +  + + V
Sbjct: 327 LNSLRFASKVNSTRLV 342

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 52/67 (77%), Positives = 62/67 (92%), Gaps = 1/67 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL NVISALA+G+  ++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 258 ALGNVISALAEGST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 316

Query: 68  GRRAKTI 74
           G+RAKTI
Sbjct: 317 GQRAKTI 323

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-28
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 6   CGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
              L  VI+AL +    H+PYR+SKLTRILQ+SLGG  RT+II   SPAS N  ET STL
Sbjct: 275 LLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTL 333

Query: 66  DFGRRAKTIKN 76
           ++  RAK I N
Sbjct: 334 EYAHRAKNILN 344

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (261), Expect = 7e-27
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL+  I A+   +K HIP+RDS+LT++L++   G +++ +I   SP      +T +TL +
Sbjct: 266 ALKECIRAMD-SDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324

Query: 68  GRRAK 72
             R K
Sbjct: 325 SSRVK 329

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  101 bits (251), Expect = 3e-25
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
           AL+  I AL   NK H P+R+SKLT++L++S +G N+RT +I   SP   +   T +TL 
Sbjct: 295 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 353

Query: 67  FGRRAKTI 74
           +  R K +
Sbjct: 354 YADRVKEL 361

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  100 bits (250), Expect = 3e-25
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
           AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + +  SPA  N  ET ++L +
Sbjct: 257 ALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTY 315

Query: 68  GRRAKTIKNVVTVNEELT-AEEWKRRYEKEKEKSSRYKGKLEKLELE 113
             R ++I N  + N         K+     KE++ R     E  E++
Sbjct: 316 ASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQ 362

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  100 bits (249), Expect = 4e-25
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 11/76 (14%)

Query: 8   ALRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASF 56
            L  VISALA+ +              IPYRDS LT +L+E+LGGN+RT ++   SPA  
Sbjct: 274 TLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADI 333

Query: 57  NESETKSTLDFGRRAK 72
           N  ET STL +  RAK
Sbjct: 334 NYDETLSTLRYADRAK 349

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 99.6 bits (247), Expect = 1e-24
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 8   ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
            L NVI AL      HIPYR+SKLT +L  SLGGN++T + I  SP      E+  +L F
Sbjct: 303 ELTNVILALLQKQD-HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRF 361

Query: 68  GRRAKT 73
                +
Sbjct: 362 AASVNS 367

>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 82  EELTAEEWKRRYEKE-KEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAAS 140
             +  E     + +  KE    Y    +++  +++  +   + +EDE+ +  D  ++   
Sbjct: 628 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 687

Query: 141 IAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDE--KDEEINQQSQY 198
                 +    +L      G+ + SL+ E  QKL ++++    +L+   K    +  +  
Sbjct: 688 PEELYGTYEY-LL------GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTD 740

Query: 199 AEKLKEQIMEQEELITTAR 217
            +  +    E  +    AR
Sbjct: 741 LKAFEVGYQEFLQRDAEAR 759

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	99.91
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	99.9
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	99.87
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	99.87
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	99.87
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	99.86
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	99.86
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	99.84

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.91  E-value=2.7e-26  Score=215.18  Aligned_cols=101  Identities=37%  Similarity=0.501  Sum_probs=87.4

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      .||+||++||+||.||+++. .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++|+.|+|.|.+
T Consensus       250 ~iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~  328 (364)
T d1sdma_         250 SINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK  328 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             ccccchhhHHHHHHHHHcCC-CcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcc
Confidence            59999999999999999987 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721          81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELS  115 (290)
Q Consensus        81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~  115 (290)
                      |....             .+..|+.++..|+.++.
T Consensus       329 n~~~~-------------~~~~l~~~i~~l~~~~~  350 (364)
T d1sdma_         329 NVSSK-------------EVARLKKLVSYWKEQAG  350 (364)
T ss_dssp             CEECH-------------HHHHHHTTTTCC-----
T ss_pred             cCCHH-------------HHHHHHHHHHHHHHHHH
Confidence            98652             24456666666666553

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=99.90  E-value=9e-25  Score=203.82  Aligned_cols=86  Identities=63%  Similarity=0.888  Sum_probs=82.7

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV   80 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~   80 (290)
                      +||+||++|++||.+|++++..|||||+||||+||+|+|||+|+|+||+||+|+..++.||++||+||.+|+.|++.|.+
T Consensus       256 ~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~TL~fa~~~~~i~~~~~~  335 (354)
T d1goja_         256 KINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKV  335 (354)
T ss_dssp             GGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCC
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhccCccceE
Confidence            49999999999999999988789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCH
Q psy5721          81 NEELTA   86 (290)
Q Consensus        81 n~~~~~   86 (290)
                      |.+.+.
T Consensus       336 n~~~~~  341 (354)
T d1goja_         336 NAELSP  341 (354)
T ss_dssp             CSSSSC
T ss_pred             cCCCCH
Confidence            987654

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=99.87  E-value=1.7e-23  Score=194.38  Aligned_cols=76  Identities=53%  Similarity=0.688  Sum_probs=73.5

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV   77 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~   77 (290)
                      .||+||++|++||.+|..+. .|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||++|+.|+|+
T Consensus       270 ~in~Sl~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~I~nk  345 (345)
T d1x88a1         270 NINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK  345 (345)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccchHHHHHHHHHHHhcCC-CcCCCccCHHHHHhHHhcCCCCcEEEEEEeCCchhhHHHHHHHHHHHHHhhhccCC
Confidence            59999999999999999987 89999999999999999999999999999999999999999999999999999874

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=99.87  E-value=1.5e-23  Score=196.23  Aligned_cols=73  Identities=36%  Similarity=0.497  Sum_probs=64.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhh-cCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~-l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++||+||.+|++++ .||||||||||+||+|+ +||||+|+||+||+|+..+++||++||+||+|||.|
T Consensus       288 ~IN~SL~~L~~vi~aL~~~~-~hiPyR~SkLT~lLkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~I  361 (362)
T d1v8ka_         288 EINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL  361 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTT
T ss_pred             hhcccHHHHHHHHHHHhcCC-CcCCCccCHHHHhhhhccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHhcC
Confidence            38999999999999999987 89999999999999998 699999999999999999999999999999999987

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=2.8e-23  Score=194.75  Aligned_cols=73  Identities=38%  Similarity=0.485  Sum_probs=70.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      +||+||++||+||.+|++++ .|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||++|+.+
T Consensus       296 ~IN~SL~aL~~vi~aL~~~~-~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~  368 (368)
T d2ncda_         296 NINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC  368 (368)
T ss_dssp             CTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred             cchhhHHHHHHHHHHHhcCC-CCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhcC
Confidence            59999999999999999987 89999999999999999999999999999999999999999999999999853

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-23  Score=188.99  Aligned_cols=73  Identities=73%  Similarity=1.026  Sum_probs=70.9

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI   74 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i   74 (290)
                      .||+||++|++||.+|++++ .|||||+||||++|+|+|||+|+|+||+||+|+..+++||++||+||+||+.|
T Consensus       251 ~iN~SL~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~I  323 (323)
T d1bg2a_         251 NINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  323 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             cccccHHHHHHHHHHHhcCC-CccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcCC
Confidence            49999999999999999987 89999999999999999999999999999999999999999999999999976

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.86  E-value=5.2e-23  Score=190.09  Aligned_cols=72  Identities=31%  Similarity=0.449  Sum_probs=69.3

Q ss_pred             CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccc
Q psy5721           1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKT   73 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~   73 (290)
                      .||+||++||+||.+|+.++ .|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||+|||.
T Consensus       259 ~IN~sL~~L~~vi~al~~~~-~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         259 NINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhHHHHHHHHHHHHHhcC
Confidence            38999999999999999887 8999999999999999999999999999999999999999999999999973

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=99.86  E-value=4.5e-23  Score=191.38  Aligned_cols=76  Identities=36%  Similarity=0.499  Sum_probs=71.3

Q ss_pred             CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721           1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN   76 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~   76 (290)
                      .||+||++||+||.+|++++  ..|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||+||+.|+.
T Consensus       264 ~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         264 NINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             HHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             hccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence            38999999999999999743  36999999999999999999999999999999999999999999999999999874

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=99.84  E-value=2.4e-22  Score=186.88  Aligned_cols=72  Identities=49%  Similarity=0.622  Sum_probs=65.3

Q ss_pred             CcchhHhHHHHHHHHHHcC-----------CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhh
Q psy5721           1 MNIFACGALRNVISALADG-----------NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGR   69 (290)
Q Consensus         1 ~IN~SL~~L~~vi~aL~~~-----------~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~   69 (290)
                      .||+||++|++||.+|+++           +..|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||+
T Consensus       267 ~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~  346 (349)
T d2zfia1         267 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD  346 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCCccEEEEEEeCCChhhHHHHHHHHHHHH
Confidence            3899999999999999862           23699999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q psy5721          70 RAK   72 (290)
Q Consensus        70 rak   72 (290)
                      |||
T Consensus       347 rak  349 (349)
T d2zfia1         347 RAK  349 (349)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            986