Psyllid ID: psy5768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650--
Protein Sequence
MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEccccEEEEEEccccccccccccEEEEEEEccccEEEEEEEcccEEEEEEEEccccccEEEEEcccccccccccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEccccccEEEEEcccccEEEEEcccccccEEEEEccccccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccccccEEEEEcccccccccccccccccccEEEEcccccEEEccccccccccccccccccEEEEEEEEEEEEEEcccccccccccEEEccccccccEEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEEEccccccEEEEEEccccEEEEEEcccccccEEEEEccccccEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEccccccccEEEEEEccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccccccEEcccccccccccccccccEEccccEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccEEEEEEccccccEEcccccEEEccccccEEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEccEEcccccccccEEEEEccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEcccccEEEEEcccccccEEEEcccccccEEEEEccccccccEEEEccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccEEEEccccccccccccccccccccEEccccccEEEEccccccccccccccccccEEEEEccccEEEEEcccccccccccccEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEccccEEEEEccccEEEEEEEccccEEEEEEEEccccccccEEEEcccccEEEEEcccccccEEEEEEccccccEEEEccccccEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEccccccEEEEEEEccEEEEEEccccEEEEEEcccccccEEEEccccccccEEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccEcccccEccccEEEcccccccccccccccccccccccccccEcccccccccccc
Coil and Loop (DISEMBL)
mfiavssptqsKIVVCNlegeyqttilsnesndtstlskissiavwpvkgkmfWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIaqniywsdpkeNVIEVARLTGQYRYVLISggvdqpsalavdpesgylfwsesgkipliaragldgkkqTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISlsnlsdvstismkpygdsylKDIKIYskdaqtgtnpcgvnnggcaELCLYNGVSAVCACAhgvvaqdgkscseyDAFIMYSRvnridsihmtdksdlnspfesirNSTMMKNIIELSYDYkrktlfysdiqkgtinsvffngsNHRVLLERQGSVEGLAYEYVHNYLYWtcnndatinkidldspkaQRIVVVRLgqhdkprgididscdsriywtnwnshlpSIQRAFfsgfgtesiittditmpnalaldHQAEKLFWGDARLDKIercdydgtnrivlskisplhpfdmavygefifWTDWVIHAVLRAnkytgeevYTLRKNIRRPMGIVAISDnldacaktpcrhlngncddickldetgqvvcscftgkvlmednrsctintvcsehdfkcsdgmcipfnqtcdrvynchdksdegilycamrdcrpgyfkcdnnkcilssht
Flexible Loop (DISEMBL)
mfiavssptqskIVVCNLEGEYQTTIlsnesndtstlSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISlsnlsdvstISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDsihmtdksdlnspfesirnsTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVrlgqhdkprgididSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT
Low Complexity Region (SEG)
MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT
Disordered region (IsUnstruct)
***********KIVVCNLEGEYQTTILS*******TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMT***********IRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCIL****
Disordered Region (DISOPRED)
MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD*TKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCIL****
Disordered Region (DISEMBL)
**********SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT
Disordered Region (DISPRO)
MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCIL***T
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	652	2.2.26 [Sep-21-2011]
P98157	4543	Low-density lipoprotein r	yes	N/A	0.906	0.130	0.410	1e-139
Q91ZX7	4545	Prolow-density lipoprotei	yes	N/A	0.903	0.129	0.411	1e-138
Q07954	4544	Prolow-density lipoprotei	yes	N/A	0.903	0.129	0.408	1e-136
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.851	0.120	0.396	1e-126
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.903	0.128	0.383	1e-126
P98158	4660	Low-density lipoprotein r	no	N/A	0.834	0.116	0.310	4e-74
O75581	1613	Low-density lipoprotein r	no	N/A	0.877	0.354	0.291	1e-72
O88572	1613	Low-density lipoprotein r	no	N/A	0.881	0.356	0.289	5e-72
A2ARV4	4660	Low-density lipoprotein r	no	N/A	0.834	0.116	0.306	3e-71
P98164	4655	Low-density lipoprotein r	no	N/A	0.838	0.117	0.291	3e-70

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  496 bits (1278), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/651 (41%), Positives = 383/651 (58%), Gaps = 60/651 (9%)

Query: 52   MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV 111
            ++W  V   + TI  A  D T RE VV+             IAVDWIA NIYW+D   +V
Sbjct: 1932 IYW--VDMGLSTISRAKRDQTWREDVVTNGIGRVEG-----IAVDWIAGNIYWTDQGFDV 1984

Query: 112  IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 171
            IEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++ +L  
Sbjct: 1985 IEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERMVLVN 2044

Query: 172  EIIMPIKDITLDLKFFSAFYRN--------------------LSKGNIHIISLSNLSD-- 209
              I     I++D +    ++ +                    LS  N+ + S+S   D  
Sbjct: 2045 VSISWPNGISVDYEDGKLYWCDARTDKIERIDLETGENREVVLSSDNMDMFSVSVFEDYI 2104

Query: 210  --------------------VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
                                  ++S++      LKDIK++++  Q GTN C  NNGGC +
Sbjct: 2105 YWSDRTHANGSIKRGSKDNATESVSLRTGIGVQLKDIKVFNRARQKGTNVCAQNNGGCQQ 2164

Query: 250  LCLYNGVSA-VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR 308
            LCL+ G     CACAHG++++DG SC +YD +++YS    + SIH++D+++LN+P +   
Sbjct: 2165 LCLFRGGGRRTCACAHGMLSEDGVSCRDYDGYLLYSERTILKSIHLSDENNLNAPIKPFE 2224

Query: 309  NSTMMKNIIELSYDYKRKT-----LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAY 363
            ++  MKN+I L++DY+  T     +FYSDI  G I  +  +G+  R ++E  GSVEGLAY
Sbjct: 2225 DAEHMKNVIALAFDYRYGTKGSNRIFYSDIHFGNIQQINDDGTGRRTIVENVGSVEGLAY 2284

Query: 364  EYVHNYLYWTCNNDATINKIDLDSPKA---QRIVVVRLGQHDKPRGIDIDSCDSRIYWTN 420
                + LYWT    +TI +  +D  +    +R  V+ +   D PR   +D C + ++WTN
Sbjct: 2285 HRGWDTLYWTSYTTSTITRHTVDQSRLGAFERETVITMSGDDHPRAFVLDECQNLMFWTN 2344

Query: 421  WNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN 480
            WN   PSI RA  SG     II  DI  PN LA+DH+AEK+++ DA LDKIERC+YDG++
Sbjct: 2345 WNEQHPSIMRATLSGANVLIIIDQDIRTPNGLAIDHRAEKIYFSDATLDKIERCEYDGSH 2404

Query: 481  RIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAI 539
            R V+ K  P+HPF +AVYG++IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A+
Sbjct: 2405 RHVILKSEPVHPFGLAVYGDYIFWTDWVRRAVQRANKYVGTDMKLLRVDIPQQPMGIIAV 2464

Query: 540  SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-F 598
            +++ D+C  +PCR  NG C D+C L   G V CSC   +VL ED     +N+ C+ HD F
Sbjct: 2465 ANDTDSCELSPCRVNNGGCQDLCLLTPKGHVNCSCRGERVLQEDFTCKALNSTCNVHDEF 2524

Query: 599  KCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILS 649
            +C +G CI F++TCD V +C DKSDE   YC+ R C+ G+  C N +C+ S
Sbjct: 2525 ECGNGDCIDFSRTCDGVVHCKDKSDEKQSYCSSRKCKKGFLHCMNGRCVAS 2575

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.
Gallus gallus (taxid: 9031)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/651 (41%), Positives = 377/651 (57%), Gaps = 62/651 (9%)

Query: 52   MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV 111
            ++W  V   + TI  A  D T RE VV+             IAVDWIA NIYW+D   +V
Sbjct: 1937 IYW--VDMGLSTISRAKRDQTWREDVVTNGIGRVEG-----IAVDWIAGNIYWTDQGFDV 1989

Query: 112  IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 171
            IEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G  P I R+ LDG ++ +L  
Sbjct: 1990 IEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGHYPRIERSRLDGTERVVLVN 2049

Query: 172  EIIMPIKDITLDLKFFSAFYRN--------------------LSKGNIHIISLSNLSDVS 211
              I     I++D +    ++ +                    LS  N+ + S+S   D  
Sbjct: 2050 VSISWPNGISVDYQGGKLYWCDARMDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFI 2109

Query: 212  TISMKPYGDS----------------------YLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
              S + + +                        LKDIK++++D Q GTN C V NGGC +
Sbjct: 2110 YWSDRTHANGSIKRGCKDNATDSVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQ 2169

Query: 250  LCLYNGVSA-VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR 308
            LCLY G     CACAHG++A+DG SC EY  +++YS    + SIH++D+ +LN+P +   
Sbjct: 2170 LCLYRGGGQRACACAHGMLAEDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFE 2229

Query: 309  NSTMMKNIIELSYDYKRKT-------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL 361
            +   MKN+I L++DY+  T       +F+SDI  G I  +  +GS    ++E  GSVEGL
Sbjct: 2230 DPEHMKNVIALAFDYRAGTSPGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGL 2289

Query: 362  AYEYVHNYLYWTCNNDATINK--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
            AY    + LYWT    +TI +  +D   P A +R  V+ +   D PR   +D C + ++W
Sbjct: 2290 AYHRGWDTLYWTSYTTSTITRHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFW 2349

Query: 419  TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
            TNWN   PSI RA  SG    ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG
Sbjct: 2350 TNWNELHPSIMRAALSGANVLTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDG 2409

Query: 479  TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIV 537
            ++R V+ K  P+HPF +AVYGE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+
Sbjct: 2410 SHRYVILKSEPVHPFGLAVYGEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGII 2469

Query: 538  AISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD 597
            A++++ ++C  +PCR  NG C D+C L   G V CSC  G++L ED     +N+ C   D
Sbjct: 2470 AVANDTNSCELSPCRINNGGCQDLCLLTHQGHVNCSCRGGRILQEDFTCRAVNSSCRAQD 2529

Query: 598  -FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             F+C++G CI F+ TCD V +C DKSDE   YC  R C+  + +C+N +C+
Sbjct: 2530 EFECANGECISFSLTCDGVSHCKDKSDEKPSYCNSRRCKKTFRQCNNGRCV 2580

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  487 bits (1253), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 266/651 (40%), Positives = 376/651 (57%), Gaps = 62/651 (9%)

Query: 52   MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV 111
            ++W  V   + TI  A  D T RE VV+             IAVDWIA NIYW+D   +V
Sbjct: 1936 IYW--VDMGLSTISRAKRDQTWREDVVTNGIGRVEG-----IAVDWIAGNIYWTDQGFDV 1988

Query: 112  IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 171
            IEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++ +L  
Sbjct: 1989 IEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERVVLVN 2048

Query: 172  EIIMPIKDITLDLKFFSAFYRN--------------------LSKGNIHIISLSNLSDVS 211
              I     I++D +    ++ +                    LS  N+ + S+S   D  
Sbjct: 2049 VSISWPNGISVDYQDGKLYWCDARTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFI 2108

Query: 212  TISMKPYGDS----------------------YLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
              S + + +                        LKDIK++++D Q GTN C V NGGC +
Sbjct: 2109 YWSDRTHANGSIKRGSKDNATDSVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQ 2168

Query: 250  LCLYNGVSA-VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR 308
            LCLY G     CACAHG++A+DG SC EY  +++YS    + SIH++D+ +LN+P +   
Sbjct: 2169 LCLYRGRGQRACACAHGMLAEDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFE 2228

Query: 309  NSTMMKNIIELSYDYKRKT-------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL 361
            +   MKN+I L++DY+  T       +F+SDI  G I  +  +GS    ++E  GSVEGL
Sbjct: 2229 DPEHMKNVIALAFDYRAGTSPGTPNRIFFSDIHFGNIQQINDDGSRRITIVENVGSVEGL 2288

Query: 362  AYEYVHNYLYWTCNNDATINK--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
            AY    + LYWT    +TI +  +D   P A +R  V+ +   D PR   +D C + ++W
Sbjct: 2289 AYHRGWDTLYWTSYTTSTITRHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFW 2348

Query: 419  TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
            TNWN   PSI RA  SG    ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG
Sbjct: 2349 TNWNEQHPSIMRAALSGANVLTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDG 2408

Query: 479  TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIV 537
            ++R V+ K  P+HPF +AVYGE IFWTDWV  AV RANK+ G  +  LR +I ++PMGI+
Sbjct: 2409 SHRYVILKSEPVHPFGLAVYGEHIFWTDWVRRAVQRANKHVGSNMKLLRVDIPQQPMGII 2468

Query: 538  AISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD 597
            A++++ ++C  +PCR  NG C D+C L   G V CSC  G++L +D     +N+ C   D
Sbjct: 2469 AVANDTNSCELSPCRINNGGCQDLCLLTHQGHVNCSCRGGRILQDDLTCRAVNSSCRAQD 2528

Query: 598  -FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             F+C++G CI F+ TCD V +C DKSDE   YC  R C+  + +C N +C+
Sbjct: 2529 EFECANGECINFSLTCDGVPHCKDKSDEKPSYCNSRRCKKTFRQCSNGRCV 2579

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score =  453 bits (1165), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/608 (39%), Positives = 361/608 (59%), Gaps = 53/608 (8%)

Query: 93   IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 152
            IAVDWIA NIYW+D   N+IEVARL G +RYV+IS G+DQP ++AV PE G LFW+E G+
Sbjct: 1958 IAVDWIAGNIYWTDHGFNLIEVARLNGSFRYVIISQGLDQPRSIAVHPEKGLLFWTEWGQ 2017

Query: 153  IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRN------------------- 193
            +P I +A LDG ++ +L    I     I++D +    ++ +                   
Sbjct: 2018 MPCIGKARLDGSEKVVLVSMGIAWPNGISIDYEENKLYWCDARTDKIERIDLETGGNREM 2077

Query: 194  -LSKGNIHIISLSNL------SD----------------VSTISMKPYGDSYLKDIKIYS 230
             LS  N+ + S++        SD                  TI+M+      LK++KI++
Sbjct: 2078 VLSGSNVDMFSVAVFGAYIYWSDRAHANGSVRRGHKNDATETITMRTGLGVNLKEVKIFN 2137

Query: 231  KDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVAQDGKSCSEYDAFIMYSRVNRI 289
            +  + GTN C  +NGGC +LCLY G S   CACAHG +A+DG +C  ++ +++YS    +
Sbjct: 2138 RVREKGTNVCARDNGGCKQLCLYRGNSRRTCACAHGYLAEDGVTCLRHEGYLLYSGRTIL 2197

Query: 290  DSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT-----LFYSDIQKGTINSVFFN 344
             SIH++D+++LNSP     N    KN+I L++DY ++      +FYSD   G I  +  N
Sbjct: 2198 KSIHLSDETNLNSPIRPYENPRYFKNVIALAFDYNQRRKGTNRIFYSDAHFGNIQLIKDN 2257

Query: 345  GSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINK--IDLDSPKA-QRIVVVRLGQH 401
              + +V++E  GSVEGLAY    + LYWT +  ++I +  +D   P A  R  V+ + + 
Sbjct: 2258 WEDRQVIVENVGSVEGLAYHRAWDTLYWTSSTTSSITRHTVDQTRPGAFDREAVITMSED 2317

Query: 402  DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKL 461
            D P  + +D C + ++WTNWN   PSI R+  +G   + +++TDI  PN L +D++AEKL
Sbjct: 2318 DHPHVLALDECQNLMFWTNWNEQHPSIMRSTLTGKNAQVVVSTDILTPNGLTIDYRAEKL 2377

Query: 462  FWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGE 521
            ++ D  L KIERC+YDG+ R V+ K  P     +AVY  +IFW+DW   A+LR+NKYTG 
Sbjct: 2378 YFSDGSLGKIERCEYDGSQRHVIVKSGPGTFLSLAVYDNYIFWSDWGRRAILRSNKYTGG 2437

Query: 522  EVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL 580
            +   LR +I  +PMGI+A++++ ++C  +PC  LNG C D+C L   G+V CSC   ++L
Sbjct: 2438 DTKILRSDIPHQPMGIIAVANDTNSCELSPCALLNGGCHDLCLLTPNGRVNCSCRGDRIL 2497

Query: 581  MEDNRSCTINTVCSEH-DFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYF 639
            +EDNR  T N+ C+ + +F+C +G CI +  TCD + +C DKSDE +LYC  R CR G+ 
Sbjct: 2498 LEDNRCVTKNSSCNAYSEFECGNGECIDYQLTCDGIPHCKDKSDEKLLYCENRSCRRGFK 2557

Query: 640  KCDNNKCI 647
             C N +CI
Sbjct: 2558 PCYNRRCI 2565

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/649 (38%), Positives = 375/649 (57%), Gaps = 60/649 (9%)

Query: 52   MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV 111
            ++W+++   +  I  A  D T +E VV+             IAVDWIA NIYW+D   N+
Sbjct: 1924 IYWTDMG--LNKISRAKRDQTWKEDVVTNGLGRVEG-----IAVDWIAGNIYWTDHGFNL 1976

Query: 112  IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 171
            IEVARL G +RYV+IS G+DQP ++AV PE G+LFW+E G++P I +A LDG ++ ++  
Sbjct: 1977 IEVARLNGSFRYVIISQGLDQPRSIAVHPEKGFLFWTEWGQVPCIGKARLDGSEKVMIVS 2036

Query: 172  EIIMPIKDITLDLKFFSAFYRN--------------------LSKGNIHIISLSNL---- 207
              I     I++D +    ++ +                    LS  N+ + S++      
Sbjct: 2037 VGITWPNGISIDYEENKLYWCDARSDKIERIDLDTGANREVLLSGSNVDLFSVAVFGAYI 2096

Query: 208  --SD----------------VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
              SD                  T++M+      LK+IKI+++  + GTN C   NGGC +
Sbjct: 2097 YWSDRAHANGSVRRGHKNDATETVTMRTGLGVNLKEIKIFNRVREKGTNVCAKENGGCQQ 2156

Query: 250  LCLYNGVSA-VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR 308
            LCLY G S   CACAHG +A DG +C  ++ +++YS    + SIH++D+++LNSP     
Sbjct: 2157 LCLYRGNSRRTCACAHGYLAGDGVTCLRHEGYLLYSGRTILKSIHLSDETNLNSPVRPYE 2216

Query: 309  NSTMMKNIIELSYDYKRKT-----LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAY 363
            N    KNII L++DY ++      +FYSD   G I  +  N  + +V++E  GSVEGLAY
Sbjct: 2217 NPNYFKNIIALAFDYNQRREGTNRIFYSDAHFGNIQLIKDNWEDRQVIVENVGSVEGLAY 2276

Query: 364  EYVHNYLYWTCNNDATINK--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTN 420
                + LYWT ++ ++I +  +D   P A  R  V+ + + D P  + +D C + ++WTN
Sbjct: 2277 HRAWDTLYWTSSSTSSITRHTVDQTRPGAIDREAVITMSEDDHPHVLALDECQNLMFWTN 2336

Query: 421  WNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN 480
            WN   PSI RA  +G     +++TDI  PN L +DH+AEKL++ D  L KIERC+YDG+ 
Sbjct: 2337 WNEQHPSIMRATLTGKNAHVVVSTDILTPNGLTIDHRAEKLYFSDGSLGKIERCEYDGSQ 2396

Query: 481  RIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAI 539
            R V+ K  P     +AVY  +IFW+DW   A+LR+NKYTG E   LR +I  +PMGI+A+
Sbjct: 2397 RHVIVKSGPGTFLSLAVYDSYIFWSDWGRRAILRSNKYTGGETKILRSDIPHQPMGIIAV 2456

Query: 540  SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH-DF 598
            +++ ++C  +PC  LNG C D+C L   G+V CSC   +VL+ +NR  T N+ C+ + +F
Sbjct: 2457 ANDTNSCELSPCALLNGGCHDLCLLTPDGRVNCSCRGDRVLLANNRCVTKNSSCNIYSEF 2516

Query: 599  KCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
            +C +G C+ +  TCD + +C DKSDE +LYC  R CR G+  C N +C+
Sbjct: 2517 ECGNGDCVDYVLTCDGIPHCKDKSDEKLLYCENRSCRSGFKPCYNRRCV 2565

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  279 bits (714), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 191/616 (31%), Positives = 296/616 (48%), Gaps = 72/616 (11%)

Query: 93   IAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
            +A+DW A N+Y+++    E +IEV R+   YR VL+   VD P  + VDP+  YLFW++ 
Sbjct: 2151 VALDWAAGNLYFTNAFVYETLIEVLRINTTYRRVLLKVSVDMPRHIIVDPKHRYLFWADY 2210

Query: 151  GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLS----- 205
            G+ P I R+ LD   +T+L  E I+  + + +D      ++ + S   I  I L      
Sbjct: 2211 GQKPKIERSFLDCTNRTVLVSEGIVTPRGLAMDHDTGYIYWVDDSLDLIARIHLDGGESQ 2270

Query: 206  --------------------------NLSDVSTISMKPYGD----------SYLKDIKIY 229
                                      NL  V   S +P             + L+D+ I+
Sbjct: 2271 VVRYGSRYPTPYGITVFGESIIWVDRNLKKVFQASKQPGNTDPPVVIRDKINLLRDVTIF 2330

Query: 230  SKDAQT------GTNPCGVNNGGCAELC--LYNGVSAVCACAHGVVAQDGKSCS-EYDAF 280
             + AQ         NPC  +NGGC+  C  L    +  C CA G +  DGKSC+   + F
Sbjct: 2331 DEHAQPLSPAELNNNPCLQSNGGCSHFCFALPELPTPRCGCAFGTLGNDGKSCATSQEDF 2390

Query: 281  IMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYS---DIQKGT 337
            ++YS  N + S+H  D  D + PF+ I   ++    I L YD +   +F++   +  +G 
Sbjct: 2391 LIYSLNNSLRSLHF-DPRDHSLPFQVI---SVAGTAIALDYDRRNNRIFFTQKLNSLRGQ 2446

Query: 338  IN--SVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
            I+  S++   S+  VLL   G  +G+A+++++  +Y++  ++ TIN +  D   + R V+
Sbjct: 2447 ISYVSLYSGSSSPTVLLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDG--SNRAVI 2504

Query: 396  VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
             R+    KPR I +D C   +YWT+W ++   I+RA   G     I+ T +  PN LALD
Sbjct: 2505 ARVS---KPRAIVLDPCRGYMYWTDWGTNA-KIERATLGGNFRVPIVNTSLVWPNGLALD 2560

Query: 456  HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
             + + L+W DA L KIER    GTNR V+   +  H F + VYG++I+WTD     + RA
Sbjct: 2561 LETDLLYWADASLQKIERSTLTGTNREVVVSTA-FHSFGLTVYGQYIYWTDLYTRKIYRA 2619

Query: 516  NKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETG-QVVCS 573
            NKY G ++  +   +  +P GI  +          PC   NG C  IC     G +  C 
Sbjct: 2620 NKYDGSDLVAMTTRLPTQPSGISTVVKTQRQQCSNPCDQFNGGCSHICAPGPNGAECQCP 2679

Query: 574  CFTGKVLMEDNRSCTIN--TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAM 631
                  L  DN+ C ++  T C++  F C +G CI  +  CD   +C D SDE    CA 
Sbjct: 2680 HEGNWYLANDNKYCVVDTGTRCNQLQFTCLNGHCINQDWKCDNDNDCGDGSDELPTVCAF 2739

Query: 632  RDCRPGYFKCDNNKCI 647
              CR   F C N +C+
Sbjct: 2740 HTCRSTAFTCGNGRCV 2755

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2

 Score =  275 bits (702), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 304/652 (46%), Gaps = 80/652 (12%)

Query: 51   KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
            +++W++++  + TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   
Sbjct: 675  RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 726

Query: 110  NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
            N IEV++L GQ+R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L
Sbjct: 727  NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 786

Query: 170  AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVS----------TISMKPYG 219
               +      +T+D      ++ +L   + ++I  SN+  ++             +  Y 
Sbjct: 787  VPNVGR-ANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 842

Query: 220  D------------------------------SYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
            D                               Y+ DI ++    Q+G N C  +NG C+ 
Sbjct: 843  DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 902

Query: 250  LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
            LCL   V   VC C AH  +  D ++CS    F+++S+ + I+ + + ++   D+  P  
Sbjct: 903  LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 962

Query: 306  SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
            S+RN      +  + YD   K L++ D ++  I     +GS    ++      + L    
Sbjct: 963  SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 1016

Query: 362  ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
               + +    Y+YWTC     IN   LD    + + VV  G+ D+PR + ++     +Y+
Sbjct: 1017 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAVVVNPEKGYMYF 1073

Query: 419  TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
            TN     P I+RA   G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G
Sbjct: 1074 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 1133

Query: 479  TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
             NRIVL   + L P  + V+  +++W D     + + +    E    ++  I +   I A
Sbjct: 1134 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 1193

Query: 539  ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD 597
            + + NL    + PC   NG C  IC +   G   CSC    VL++D  SC     CS   
Sbjct: 1194 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGEPPTCSPQQ 1253

Query: 598  FKCSDGM--CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
            F C  G   CIP    CD    C D SDE  L C +  C    F+C + +CI
Sbjct: 1254 FTCFTGEIDCIPVAWRCDGFTECEDHSDE--LNCPV--CSESQFQCASGQCI 1301

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score =  272 bits (696), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 188/649 (28%), Positives = 302/649 (46%), Gaps = 74/649 (11%)

Query: 51   KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
            +++W++++  + TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   
Sbjct: 675  RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 726

Query: 110  NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
            N IEV++L GQ+R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L
Sbjct: 727  NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 786

Query: 170  AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD--VSTISMKPYGDS------ 221
               +      +T+D      ++ +L    I    +  L+   ++     P+G +      
Sbjct: 787  VPNVGR-ANGLTIDYAKRRLYWTDLDTNLIESSDMLGLNREVIADDLPHPFGLTQYQDYI 845

Query: 222  -----------------------------YLKDIKIYSKDAQTGTNPCGVNNGGCAELCL 252
                                         Y+ DI ++    Q G N C  +NG C+ LCL
Sbjct: 846  YWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQAGWNECASSNGHCSHLCL 905

Query: 253  YNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFESIR 308
               V   VC C AH  +  D ++CS    F+++S+ + I+ + + ++   D+  P  S+R
Sbjct: 906  AVPVGGFVCGCPAHYSLNADNRTCSAPSTFLLFSQKSAINRMVIDEQQSPDIILPIHSLR 965

Query: 309  NSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL------- 361
            N      +  + YD   K L++ D ++ +I     +G     ++    + + L       
Sbjct: 966  N------VRAIDYDPLDKQLYWIDSRQNSIRKAHEDGGQGFNVVANSVANQNLEIQPYDL 1019

Query: 362  AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNW 421
            + +    Y+YWTC      N ID+     + + VV  G+ D+PR I ++     +Y+TN 
Sbjct: 1020 SIDIYSRYIYWTCE---ATNVIDVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNL 1076

Query: 422  NSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR 481
                P I+RA   G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G NR
Sbjct: 1077 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSKLGKLFWADSDLRRIESSDLSGANR 1136

Query: 482  IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD 541
            IVL   + L P  + V+  +++W D     + + +    E    ++  I +   I A+ +
Sbjct: 1137 IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 1196

Query: 542  -NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
             NL    + PC   NG C  IC +   G   CSC    VL++D  SC     CS   F C
Sbjct: 1197 LNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGEPPTCSPQQFTC 1256

Query: 601  SDG--MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
              G   CIP    CD    C D SDE  L C +  C    F+C + +CI
Sbjct: 1257 FTGDIDCIPVAWRCDGFTECEDHSDE--LNCPV--CSESQFQCASGQCI 1301

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 189/616 (30%), Positives = 299/616 (48%), Gaps = 72/616 (11%)

Query: 93   IAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
            +AVDW+A N+Y+++    E +IEV R+   YR VL+   VD P  + VDP+  YLFW++ 
Sbjct: 2151 VAVDWVAGNLYFTNAFVYETLIEVIRINTTYRRVLLKVSVDMPRHIVVDPKHRYLFWADY 2210

Query: 151  GKIPLIARAGLDGKKQTILAQEIIMPIKDITLD------------LKFFSAFYRNLSKGN 198
            G+ P I R+ LD   +T+L  E I+  + + +D            L   +  +R+  +  
Sbjct: 2211 GQKPKIERSFLDCTNRTVLVSEGIVTPRGLAVDHDTGYIYWVDDSLDIIARIHRDGGESQ 2270

Query: 199  I------------------HIISLS-NLSDVSTISMKPYGD----------SYLKDIKIY 229
            +                   II +  NL  V   S +P             + L+D+ I+
Sbjct: 2271 VVRYGSRYPTPYGITVFGESIIWVDRNLRKVFQASKQPGNTDPPTVIRDSINLLRDVTIF 2330

Query: 230  SKD------AQTGTNPCGVNNGGCAELC--LYNGVSAVCACAHGVVAQDGKSC-SEYDAF 280
             +       A+   NPC  +NGGC+  C  L    +  C CA G +  DGK+C +  + F
Sbjct: 2331 DEHVQPLSPAELNNNPCLQSNGGCSHFCFALPELPTPKCGCAFGTLEDDGKNCATSREDF 2390

Query: 281  IMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYS---DIQKGT 337
            ++YS  N + S+H  D  D N PF++I    M    I L YD +   +F++   +  +G 
Sbjct: 2391 LIYSLNNSLRSLHF-DPQDHNLPFQAISVEGMA---IALDYDRRNNRIFFTQKLNPIRGQ 2446

Query: 338  INSV--FFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
            I+ V  +   S+  +LL   G  +G+A+++++  +Y++  ++ TIN +  D   + R V+
Sbjct: 2447 ISYVNLYSGASSPTILLSNIGVTDGIAFDWINRRIYYSDFSNQTINSMAEDG--SNRAVI 2504

Query: 396  VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
             R+    KPR I +D C   +YWT+W ++   I+RA   G     I+ T +  PN L LD
Sbjct: 2505 ARVS---KPRAIVLDPCRGYMYWTDWGTNA-KIERATLGGNFRVPIVNTSLVWPNGLTLD 2560

Query: 456  HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
             + + L+W DA L KIER    G+NR V+   +  H F + VYG++I+WTD+    + RA
Sbjct: 2561 LETDLLYWADASLQKIERSTLTGSNREVVISTA-FHSFGLTVYGQYIYWTDFYTKKIYRA 2619

Query: 516  NKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETG-QVVCS 573
            NKY G ++  +   +  +P GI  +          PC   NG C  IC     G +  C 
Sbjct: 2620 NKYDGSDLIAMTTRLPTQPSGISTVVKTQQQQCSNPCDQFNGGCSHICAPGPNGAECQCP 2679

Query: 574  CFTGKVLMEDNRSCTINT--VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAM 631
                  L  DN+ C ++T   C++  F C +G CI  +  CD   +C D SDE    CA 
Sbjct: 2680 HEGSWYLANDNKYCVVDTGARCNQFQFTCLNGRCISQDWKCDNDNDCGDGSDELPTVCAF 2739

Query: 632  RDCRPGYFKCDNNKCI 647
              CR   F C N +C+
Sbjct: 2740 HTCRSTAFTCANGRCV 2755

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  266 bits (681), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 297/621 (47%), Gaps = 74/621 (11%)

Query: 93   IAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
            IAVDW+A N+Y+++    E +IEV R+   YR VL+   VD P  + VDP++ YLFW++ 
Sbjct: 2150 IAVDWVAGNLYFTNAFVSETLIEVLRINTTYRRVLLKVTVDMPRHIVVDPKNRYLFWADY 2209

Query: 151  GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLS----- 205
            G+ P I R+ LD   +T+L  E I+  + + +D      ++ + S   I  I ++     
Sbjct: 2210 GQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVDRSDGYVYWVDDSLDIIARIRINGENSE 2269

Query: 206  --------------------------NLSDVSTISMKPYGD----------SYLKDIKIY 229
                                      NL  +   S +P             ++L+D+ I+
Sbjct: 2270 VIRYGSRYPTPYGITVFENSIIWVDRNLKKIFQASKEPENTEPPTVIRDNINWLRDVTIF 2329

Query: 230  SKD------AQTGTNPCGVNNGGCAELC--LYNGVSAVCACAHGVVAQDGKSCS-EYDAF 280
             K       A+   NPC  NNGGC+ LC  L    +  C CA G +  DGK+C+   + F
Sbjct: 2330 DKQVQPRSPAEVNNNPCLENNGGCSHLCFALPGLHTPKCDCAFGTLQSDGKNCAISTENF 2389

Query: 281  IMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQK---GT 337
            ++++  N + S+H+ D  + + PF++I    + + ++ L YD     ++++       G 
Sbjct: 2390 LIFALSNSLRSLHL-DPENHSPPFQTI---NVERTVMSLDYDSVSDRIYFTQNLASGVGQ 2445

Query: 338  INSVFFNGSNHR--VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
            I+    +   H   V+    G+ +G+A++++   +Y++   +  IN +  D   + R V+
Sbjct: 2446 ISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDG--SNRTVI 2503

Query: 396  VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
             R+    KPR I +D C   +YW +W++H   I+RA   G     I+ + + MP+ L LD
Sbjct: 2504 ARV---PKPRAIVLDPCQGYLYWADWDTHA-KIERATLGGNFRVPIVNSSLVMPSGLTLD 2559

Query: 456  HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
            ++ + L+W DA L +IER    G +R V+   + +H F + +YG++I+WTD     + RA
Sbjct: 2560 YEEDLLYWVDASLQRIERSTLTGVDREVIVNAA-VHAFGLTLYGQYIYWTDLYTQRIYRA 2618

Query: 516  NKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSC 574
            NKY G     +  N+  +P GI  +  N       PC   NG C  IC     G   C C
Sbjct: 2619 NKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHICAPGPNG-AECQC 2677

Query: 575  -FTGKVLMEDNRS-CTINT--VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA 630
               G   + +NR  C ++    C    F CS+G CI     CD   +C D SDE    CA
Sbjct: 2678 PHEGNWYLANNRKHCIVDNGERCGASSFTCSNGRCISEEWKCDNDNDCGDGSDEMESVCA 2737

Query: 631  MRDCRPGYFKCDNNKCILSSH 651
            +  C P  F C N +C+  S+
Sbjct: 2738 LHTCSPTAFTCANGRCVQYSY 2758

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	652
321462894	4592	hypothetical protein DAPPUDRAFT_307561 [	0.953	0.135	0.483	0.0
242018517	4603	low-density lipoprotein receptor, putati	0.984	0.139	0.474	1e-180
270010181	4576	hypothetical protein TcasGA2_TC009548 [T	0.947	0.135	0.456	1e-173
427796811	4696	Putative prolow-density lipoprotein rece	0.944	0.131	0.430	1e-161
427795113	3609	Putative prolow-density lipoprotein rece	0.944	0.170	0.428	1e-161
170035892	4695	very low-density lipoprotein receptor [C	0.874	0.121	0.462	1e-153
157115039	4649	low-density lipoprotein receptor (ldl) [	0.877	0.123	0.448	1e-152
158300186	4718	AGAP012372-PA [Anopheles gambiae str. PE	0.874	0.120	0.450	1e-151
194753139	4651	GF12345 [Drosophila ananassae] gi|190620	0.926	0.129	0.426	1e-151
195123466	4639	GI18681 [Drosophila mojavensis] gi|19391	0.900	0.126	0.437	1e-151

>gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/687 (48%), Positives = 442/687 (64%), Gaps = 65/687 (9%)

Query: 17   NLEGEYQTTILS---NESNDTSTLSKIS------SIAVWPVKGKMFWSNVTKQVVTIEMA 67
            +L GE +   L    N +N T  L  IS      SI    V G ++W  V     +I   
Sbjct: 1779 SLNGEIKGVALGETVNVTNHTEVLGPISRIQMANSIDFLAVDGYIYW--VDSDHGSIVRI 1836

Query: 68   FMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS 127
              DGT R+ +   +   +V      +A+DWIA N+YW++PK +VIEVA + G ++YV+++
Sbjct: 1837 RRDGTGRQVIA--QGLDSVEG----LAIDWIAGNMYWTNPKFDVIEVANVNGSFKYVVVA 1890

Query: 128  GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFF 187
            G +D+P A+AVDP +G+LFW++ G+ P I R  LDG  + +L  E I     +TLD +  
Sbjct: 1891 GDMDKPMAIAVDPVAGFLFWTDRGRTPRIERVRLDGSDRRVLVNESIFFTTGLTLDYQNK 1950

Query: 188  SAF------------------------------------YRNL--------SKGNIHIIS 203
              +                                    YR+           G ++   
Sbjct: 1951 KVYWCDSRLDTIESMDYDGGNRQVLLDKTHLENPQGISVYRDQIFWIDTTQDGGTLNQAP 2010

Query: 204  LSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACA 263
             SN+SD   + +   G+S LKDIK+YSK+ Q GTNPC ++NG C ELCL+NG SAVCACA
Sbjct: 2011 TSNVSDHQVV-LSQLGES-LKDIKVYSKERQEGTNPCSIHNGDCKELCLFNGSSAVCACA 2068

Query: 264  HGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDY 323
            HG V+ DG+ C E+DAF++YSR+ RIDSIH++D ++ N+PF SI +   ++N+I L YDY
Sbjct: 2069 HGQVSADGRDCEEFDAFVVYSRMTRIDSIHISDANNFNAPFPSIESKEFIRNVIGLGYDY 2128

Query: 324  KRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKI 383
            +R+ +FYSDIQ+G+INSV+FNG+ H+V+ E+QG VEGLAY+   + LYWTCN+D+TI+K 
Sbjct: 2129 QRRLIFYSDIQRGSINSVYFNGTRHKVIAEKQGMVEGLAYDSKDDSLYWTCNSDSTISKA 2188

Query: 384  DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT 443
             L    A    VVRL   DKPRGI +D CDSR+YWTNWNS  P IQRA+++GF  +SIIT
Sbjct: 2189 VLSHKNATVEKVVRLTTEDKPRGIALDPCDSRVYWTNWNSRNPGIQRAYYTGFDVQSIIT 2248

Query: 444  TDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIF 503
            TDI MPNALALD  A+KL+W DARLDK+ER D DG NR+VLSK+SP HPFD+AVYG +IF
Sbjct: 2249 TDIRMPNALALDLVAQKLYWSDARLDKMERADLDGKNRVVLSKVSPQHPFDIAVYGNYIF 2308

Query: 504  WTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICK 563
            WTDWV+HAVLRANKYTGE+V  LRK + RPMGIVA+ +    C+  PCR LNG C+D+C+
Sbjct: 2309 WTDWVLHAVLRANKYTGEDVVWLRKEVPRPMGIVAVHNTTYDCSANPCRALNGGCEDLCR 2368

Query: 564  LDETGQVVCSCFTGK-VLMEDNRSC-TINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDK 621
            LDE G+V C CF G+ VL  D   C   +T CS  +F+CS G CIPF+ TCD V  C D 
Sbjct: 2369 LDEYGKVSCQCFPGRTVLRSDPSRCGRQSTNCSAMEFECSSGDCIPFHFTCDGVAECPDF 2428

Query: 622  SDEGILYCAMRDCRPGYFKCDNNKCIL 648
            SDE   YC  R C PG+F+C N++C+L
Sbjct: 2429 SDELPTYCMFRKCLPGFFQCQNSRCVL 2455

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 348/734 (47%), Positives = 463/734 (63%), Gaps = 92/734 (12%)

Query: 2    FIAVSSPTQSK----IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKM----- 52
            F+ V++PT+ K     ++ ++  E +   L    N T  L  +S +++    G +     
Sbjct: 1740 FVDVNNPTKCKGIEEFIIYSINWEVKGLALPPGDNYTKVLGPLSRVSMATNLGFLYDKEL 1799

Query: 53   -FWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNL--HIAVDWIAQNIYWSDPKE 109
             FW +  +  +T      DGT RETV+ + +    T  +    +A+DWIA+NIYW+DPK 
Sbjct: 1800 IFWGDSDQGKIT--KIKRDGTNRETVIERYETMENTGSDFVTGLAIDWIAENIYWTDPKL 1857

Query: 110  NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
            NVIEV+RL G  R+V+IS G+ +P  +AVDP  G LFW+ +GK P I  + LDG  + +L
Sbjct: 1858 NVIEVSRLNGSNRFVVISDGISKPGGIAVDPVVGKLFWAVNGKSPRIECSALDGSNRMVL 1917

Query: 170  AQEI---IMPIKDITLDL------------------------------------KFFSAF 190
              +    I  I DI LDL                                    + F+ +
Sbjct: 1918 VNDTSGSISTINDIALDLETKHLYWCDSALDKIERVKYDGSERTLLLDHSLDNPQAFTVY 1977

Query: 191  YRNLS-------KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVN 243
             ++L        +G+I    LSNLSD  T+ ++  GDS LKDI+I+SK  Q G NPC  N
Sbjct: 1978 NKHLYWIDTTHLRGSIKFAPLSNLSDY-TVLLQGVGDS-LKDIEIFSKAKQMGVNPCKFN 2035

Query: 244  NGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSP 303
            NGGCAELCL+NG   VC CAHG VA+D K+C +Y++FIMYSRV RIDSIH++DK++LN+P
Sbjct: 2036 NGGCAELCLFNGTHPVCKCAHGQVAKDQKNCEDYNSFIMYSRVIRIDSIHISDKNNLNAP 2095

Query: 304  FESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAY 363
            F SI+N  +M+N I LSYDY+R  LFYSDIQ+G+IN+V+FNG+NH VL++RQGSVEGL+Y
Sbjct: 2096 FPSIQNKELMRNAIGLSYDYQRSLLFYSDIQRGSINAVYFNGTNHTVLIDRQGSVEGLSY 2155

Query: 364  EYVHNYLYWTCNNDATINKIDL------------DSPKAQRI------VVVRLGQHDKPR 405
            E     LYWTCNN+ATI++++L            ++ K+ +I      +VV L + DKPR
Sbjct: 2156 ESYGQTLYWTCNNEATISRMNLSQLIPHIEPYNSNTTKSSKIELSKVEIVVNLEKEDKPR 2215

Query: 406  GIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGD 465
            GI  DSC+SRI+WTNWN   PSIQR+F +G+  +SII T+I MPNA+ LD  A KL+W D
Sbjct: 2216 GIVTDSCNSRIFWTNWNHQAPSIQRSFLNGYMVQSIIKTNIRMPNAITLDFMAMKLYWSD 2275

Query: 466  ARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYT 525
            ARLDKIERC+ DGTNR+VLS  SP HPFDMAV+G ++FWTDWV+HAV+RANK TGE+V+ 
Sbjct: 2276 ARLDKIERCETDGTNRVVLSNTSPQHPFDMAVHGNYLFWTDWVLHAVVRANKLTGEDVHY 2335

Query: 526  LRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGK-VLMEDN 584
            LRK+I RPMGIVA+ D+   C   PC   NG C+D C LD +G V+CSCF+G+ VL  + 
Sbjct: 2336 LRKDIPRPMGIVAVHDDTAKCHNNPCLIANGGCEDKCNLDASGFVICSCFSGREVLAHNP 2395

Query: 585  RSCT-------INTVCSEH--DFKCSD-GMCIPFNQTCDRVYNCHDKSDEGILYC-AMRD 633
            + C         N  C E+   FKCS  G CIPF  TCD V +C D SDE I YC A R 
Sbjct: 2396 KRCVEAVVDVYENGTCDENGKHFKCSSHGTCIPFELTCDDVKHCEDGSDEFITYCGASRV 2455

Query: 634  CRPGYFKCDNNKCI 647
            C  GY+KC NN+CI
Sbjct: 2456 CHEGYYKCANNRCI 2469

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum]

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/681 (45%), Positives = 435/681 (63%), Gaps = 63/681 (9%)

Query: 18   LEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV 77
            L G  QT +L       S +S  ++I        +FW++  +  +T      DGT+R  +
Sbjct: 1883 LNGNNQTAVLG----PISRISMATAIDFVAESDLLFWADSDRGSIT--SIKRDGTQRRHI 1936

Query: 78   VSQKKYPAVTACN--LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSA 135
            +   +       +    +AVDWIA N+YW D K  VIEVARL G  ++VL++  + +P+A
Sbjct: 1937 IEPTEAMDSVPVDWLTGLAVDWIAGNMYWCDSKRGVIEVARLDGSKQHVLLANEIGKPTA 1996

Query: 136  LAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS 195
            +AVDP  G + W+     P +  A +DG+ + +L    +  I D+TLD      ++ + S
Sbjct: 1997 IAVDPARGVMVWAGG---PRLEIATMDGRNRNLLVNSSVA-ISDVTLDSDQRKVYFCDTS 2052

Query: 196  KGNIHIIS-------------------------------------------LSNLSDVST 212
            +  I +I                                            LSNLS+   
Sbjct: 2053 RHTIEVIGYDGSGHEVLVNDTLENPTALTILDDKLYWLDKTFEKGSLLSAPLSNLSNYK- 2111

Query: 213  ISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGK 272
            I ++  GD +LKDI+I+SK  QTGTNPC  NNGGC +LCLYNG   VC C+HG ++ DGK
Sbjct: 2112 ILLRDVGD-FLKDIQIFSKRKQTGTNPCAQNNGGCEQLCLYNGTHPVCVCSHGKISSDGK 2170

Query: 273  SCSEYDAFIMYSRVNRIDSIHMTDKSDL-NSPFESIRNSTMMKNIIELSYDYKRKTLFYS 331
            +C  +  F+MYSRV  IDSI M D  +L N+P  SI+N+T++KN I LS+ YK + LFYS
Sbjct: 2171 TCEAFKTFVMYSRVVSIDSIQMLDDENLQNAPHPSIKNNTLLKNAIGLSFSYKHQRLFYS 2230

Query: 332  DIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD---SP 388
            DIQKG+IN+V++NG++HR+++E QGSVEGLAYE VHN LYWTCNN ATIN+++L    + 
Sbjct: 2231 DIQKGSINAVYYNGTDHRIIVEGQGSVEGLAYEQVHNMLYWTCNNHATINRVNLTDQMTN 2290

Query: 389  KAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITM 448
             +Q   +VRL   DKPRGI +DSC +R++WTNWNSH PSI+R F SG+  E+II TDI M
Sbjct: 2291 SSQVEQIVRLRSQDKPRGIAVDSCGARVFWTNWNSHQPSIERVFLSGYNREAIIKTDIRM 2350

Query: 449  PNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWV 508
            PNAL LDH+A+KL+WGDARLDKIERC+YDG+NR++L+K++P HPF +AVY ++I+WTDW+
Sbjct: 2351 PNALTLDHKAQKLYWGDARLDKIERCEYDGSNRVILAKVTPQHPFALAVYADYIYWTDWM 2410

Query: 509  IHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETG 568
            +HAVLRA+K TG+ V  LR+++ RPMGIV I+++ + C   PC+ LNG C++IC L+ + 
Sbjct: 2411 LHAVLRADKLTGQNVVWLRRDVARPMGIVTIANDTEDCFYNPCKILNGGCEEICTLNASA 2470

Query: 569  QVVCSCFTGKVLMEDNRSCTINT-VCSEHD-FKCSDGMCIPFNQTCDRVYNCHDKSDEGI 626
             V CSC  G++L ED + C  NT  C ++D F+CSDG C+PF  TCD + +C DKSDE  
Sbjct: 2471 MVQCSCMDGRILAEDRKRCYSNTKACDQYDSFRCSDGGCVPFKLTCDGIAHCSDKSDEEP 2530

Query: 627  LYCAMRDCRPGYFKCDNNKCI 647
             YC  R C  G+F C+N +C+
Sbjct: 2531 GYCGHRTCLQGWFHCNNKRCV 2551

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796811|gb|JAA63857.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus]

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 295/686 (43%), Positives = 411/686 (59%), Gaps = 70/686 (10%)

Query: 24   TTILSNESNDTSTLSKISSIAVWP----VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 79
            T+++S+ +     L+ IS +++      V   ++W  V  +  +I     D T RETVVS
Sbjct: 1980 TSLVSSSTPSQRVLAPISRVSMATSIDFVDEYIYW--VDSEGGSITRIHRDMTGRETVVS 2037

Query: 80   QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
                 A+      +A+DW+A N+YW DP  +VIEV+RL G  RYVL+SG +D+P A+ V 
Sbjct: 2038 --GLDAIEG----LAIDWVAGNMYWIDPSYDVIEVSRLNGSGRYVLLSGNMDKPRAIVVH 2091

Query: 140  PESGYLFWSESGKIP-------------------------------------------LI 156
            P  GY+FWS+ G  P                                            I
Sbjct: 2092 PYKGYIFWSDWGVPPKIERAALDGSNRIVLVNVSVQLVNDLAIDFEEDKLYWCDSRTDTI 2151

Query: 157  ARAGLDGK-KQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISM 215
             R  LDG  ++T+         +D     +     +     G     + S+  D S   +
Sbjct: 2152 ERVNLDGTGRETVFPPPFETEEEDAEDSHRPLQNPFSLAVHGTYVYWADSHREDGSIFRV 2211

Query: 216  KPYGDSY-----------LKDIKIY-SKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCAC 262
            K +               +KD++++ ++  Q   NPC V NGGC ELCLY G     CAC
Sbjct: 2212 KKHDPGLEEMLVNHLTDSIKDLQVFHTRPKQKTNNPCSVGNGGCQELCLYKGDDGHTCAC 2271

Query: 263  AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD 322
            +HG VA DG++C +Y+ F+M+SRV  IDSIHM D+++LN+PF SI +S  M+NII L++D
Sbjct: 2272 SHGRVAPDGRTCQDYEGFVMFSRVRTIDSIHMMDETNLNAPFPSISSSEFMRNIIGLAFD 2331

Query: 323  YKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINK 382
            Y  + +FYSDIQ+G+INSV FNGS H VL+++QGSVEGLAYE V+N LYWT + DA++ +
Sbjct: 2332 YSERRIFYSDIQRGSINSVHFNGSGHTVLVQKQGSVEGLAYEPVNNELYWTSHRDASVGR 2391

Query: 383  IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII 442
            + L  P A    +V+LG  DKPRGI + SC  R++WTNWNSH PSIQ+++ +G+  ESII
Sbjct: 2392 VSLSDPTALPEKIVKLGTEDKPRGIVVSSCIKRVFWTNWNSHHPSIQKSYLNGYELESII 2451

Query: 443  TTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFI 502
            TTDI MPN +A+DHQ +KL+W DARLDKIERCD++G +R VL    P HPFD+AVYG+F+
Sbjct: 2452 TTDIRMPNGIAIDHQLQKLYWSDARLDKIERCDFNGGDRHVLLSEHPQHPFDLAVYGDFV 2511

Query: 503  FWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDIC 562
            FWTDWV HAVLRANK+TG +V  LRKN+ RPMGI+A++++ + C  +PC  LNG C+D C
Sbjct: 2512 FWTDWVAHAVLRANKHTGADVVVLRKNVVRPMGIIAVANDTNDCTLSPCSTLNGGCEDQC 2571

Query: 563  KLDETGQVVCSCFTGKVLMEDNRSCTINTV-CSEHDFKCSDGMCIPFNQTCDRVYNCHDK 621
             +   G + C CF G+ LM D R C +    C+  +F+C DG CIPF   CD V  C D 
Sbjct: 2572 VVATNGTIYCQCFPGRSLMSDGRRCAVKIANCTSAEFQCGDGACIPFELACDGVQACPDG 2631

Query: 622  SDEGILYCAMRDCRPGYFKCDNNKCI 647
            SDE ++ CAM  C  G+++C N +C+
Sbjct: 2632 SDENVIDCAMLTCPEGFYRCHNGRCV 2657

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795113|gb|JAA63008.1| Putative prolow-density lipoprotein receptor-related protein 1, partial [Rhipicephalus pulchellus]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/686 (42%), Positives = 411/686 (59%), Gaps = 70/686 (10%)

Query: 24   TTILSNESNDTSTLSKISSIAVWP----VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 79
            T+++S+ +     L+ IS +++      V   ++W  V  +  +I     D T RETVVS
Sbjct: 893  TSLVSSSTPSQRVLAPISRVSMATSIDFVDEYIYW--VDSEGGSITRIHRDMTGRETVVS 950

Query: 80   QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
                 A+      +A+DW+A N+YW DP  +VIEV+RL G  RYVL+SG +D+P A+ V 
Sbjct: 951  --GLDAIEG----LAIDWVAGNMYWIDPSYDVIEVSRLNGSGRYVLLSGNMDKPRAIVVH 1004

Query: 140  PESGYLFWSESGKIP-------------------------------------------LI 156
            P  GY+FWS+ G  P                                            I
Sbjct: 1005 PYKGYIFWSDWGVPPKIERAALDGSNRIVLVNVSVQLVNDLAIDFEEDKLYWCDSRTDTI 1064

Query: 157  ARAGLDGK-KQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISM 215
             R  LDG  ++T+         +D     +     +     G     + ++  D S   +
Sbjct: 1065 ERVNLDGTGRETVFPPPFETEEEDAEDSHRPLQNPFSLAVHGTYVYWADTHREDGSIFRV 1124

Query: 216  KPYGDSY-----------LKDIKIY-SKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCAC 262
            K +               +KD++++ ++  Q   NPC V NGGC ELCLY G     CAC
Sbjct: 1125 KKHDPGLEEMLVNHLTDSIKDLQVFHTRPKQKTNNPCSVGNGGCQELCLYKGDDGHTCAC 1184

Query: 263  AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD 322
            +HG VA DG++C +Y+ F+M+SRV  IDSIHM D+++LN+PF SI +S  M+NII L++D
Sbjct: 1185 SHGRVAPDGRTCQDYEGFVMFSRVRTIDSIHMMDETNLNAPFPSISSSEFMRNIIGLAFD 1244

Query: 323  YKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINK 382
            Y  + +FYSDIQ+G+INSV FNGS H VL+++QGSVEGLAYE V+N LYWT + DA++ +
Sbjct: 1245 YSERRIFYSDIQRGSINSVHFNGSGHTVLVQKQGSVEGLAYEPVNNELYWTSHRDASVGR 1304

Query: 383  IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII 442
            + L  P A    +V+LG  DKPRGI + SC  R++WTNWNSH PSIQ+++ +G+  ESII
Sbjct: 1305 VSLSDPTALPEKIVKLGTEDKPRGIVVSSCIKRVFWTNWNSHHPSIQKSYLNGYELESII 1364

Query: 443  TTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFI 502
            TTDI MPN +A+DHQ +KL+W DARLDKIERCD++G +R VL    P HPFD+AVYG+F+
Sbjct: 1365 TTDIRMPNGIAIDHQLQKLYWSDARLDKIERCDFNGGDRHVLLSEHPQHPFDLAVYGDFV 1424

Query: 503  FWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDIC 562
            FWTDWV HAVLRANK+TG +V  LRKN+ RPMGI+A++++ + C  +PC  LNG C+D C
Sbjct: 1425 FWTDWVAHAVLRANKHTGADVVVLRKNVVRPMGIIAVANDTNDCTLSPCSTLNGGCEDQC 1484

Query: 563  KLDETGQVVCSCFTGKVLMEDNRSCTINTV-CSEHDFKCSDGMCIPFNQTCDRVYNCHDK 621
             +   G + C CF G+ LM D R C +    C+  +F+C DG CIPF   CD V  C D 
Sbjct: 1485 VVATNGTIYCQCFPGRSLMSDGRRCAVKIANCTSAEFQCGDGACIPFELACDGVQACPDG 1544

Query: 622  SDEGILYCAMRDCRPGYFKCDNNKCI 647
            SDE ++ CAM  C  G+++C N +C+
Sbjct: 1545 SDENVIDCAMLTCPEGFYRCHNGRCV 1570

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035892|ref|XP_001845800.1| very low-density lipoprotein receptor [Culex quinquefasciatus] gi|167878399|gb|EDS41782.1| very low-density lipoprotein receptor [Culex quinquefasciatus]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/632 (46%), Positives = 402/632 (63%), Gaps = 62/632 (9%)

Query: 70   DGTKRETVVSQKKYPAVTACNL-----HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 124
            DG++R  +VS   +  V   N       IAVDW+A NIYW+D K N+IEVARL G  RYV
Sbjct: 1999 DGSERSVIVSN--FEQVVDGNSIDWLGEIAVDWVADNIYWTDQKRNLIEVARLNGSLRYV 2056

Query: 125  LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL 184
            + S  ++ P  +AVDP SG++F+S  GKI    R GLDG  + IL  +    I D+TLD+
Sbjct: 2057 VASN-LESPQLIAVDPVSGFIFYSGRGKI---GRTGLDGTGKFILVNQT-SAINDLTLDI 2111

Query: 185  KFFSAFYRNLS---------KGNIHIISLSN-LSDVSTISMK------------------ 216
            +    ++  +           GN+  I L+N L +V  + +                   
Sbjct: 2112 ENQVVYWCEVQTDTIWRVDYDGNMKTILLNNTLDNVKALDLYEDNIFWSDVHGNIKAANV 2171

Query: 217  -------PYGDS---YLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGV 266
                   P  DS    +KDIKI+S   Q  TN CG+NNGGC ELCL+NG   +CAC+HG 
Sbjct: 2172 RNITNYWPVVDSDGASVKDIKIFSSQKQQKTNACGINNGGCQELCLFNGTHPICACSHGK 2231

Query: 267  VAQDG-KSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKR 325
            ++QD  KSC  YD+F++YS+V  I+SIH+TD +++N P   I+NST +KN I L+YD+ +
Sbjct: 2232 ISQDDFKSCESYDSFLLYSKVAAIESIHITDPNNINGPIPEIQNSTFLKNTIALTYDHDQ 2291

Query: 326  KTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL 385
            + ++YSD++  +INSVF+NGSNHR ++ +Q +VEGLA+  +   L+WT NN+A I  ++L
Sbjct: 2292 QLIYYSDVEYSSINSVFYNGSNHRKIVAKQLTVEGLAFNPITKQLFWTSNNEAAIRSLEL 2351

Query: 386  -----DSPKAQRIV--VVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
                 D+     +V  +++L   DKPRGI ++ C + IYWTNWN    SIQRA+ SG+G 
Sbjct: 2352 ANITADAKANADLVRELIKLKPTDKPRGIAVEPCLAMIYWTNWNPQAASIQRAYPSGYGL 2411

Query: 439  ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
            ESIITTDI MPNA+ LD+QA+KL+W DAR DKIER DYDG NR+VL+  +P HPF MAVY
Sbjct: 2412 ESIITTDIRMPNAITLDYQAKKLYWADARYDKIERADYDGKNRVVLAHSTPKHPFAMAVY 2471

Query: 499  GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNC 558
            G+ +FWTDW++HAV+RANKY+G +V  LRK+I RPMGIVA+      C+  PC+ LNG C
Sbjct: 2472 GDLLFWTDWILHAVIRANKYSGSDVVWLRKDIARPMGIVAVQHIDKDCSADPCKILNGGC 2531

Query: 559  DDIC-KLDETGQVVCSCFTGKVLMEDNRSCT--INTVCSEHDFKCSDGMCIPFNQTCDRV 615
            +D C  +D  G+++C C  G VL +D   C   +++ CS  +F CS G CIPF  TCD +
Sbjct: 2532 EDTCLGVDGKGKILCGCTQG-VLAKDGYRCVPKLSSNCSSEEFSCSIGGCIPFYLTCDGI 2590

Query: 616  YNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C D SDE   YCA R C  GYF+C+N++CI
Sbjct: 2591 PHCLDGSDELQSYCAQRTCSVGYFQCNNHRCI 2622

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115039|ref|XP_001652530.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108877064|gb|EAT41289.1| AAEL007041-PA [Aedes aegypti]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 286/637 (44%), Positives = 403/637 (63%), Gaps = 65/637 (10%)

Query: 70   DGTKRETVVSQKKYPAVTACNL-----HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 124
            DG++R  +VS   +  V   N       IAVDW+A NIYW+D K N+IEVARL G  RYV
Sbjct: 1956 DGSERSVIVSN--FEQVVDGNSLDWLGGIAVDWVANNIYWTDQKRNLIEVARLDGFMRYV 2013

Query: 125  LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL 184
            + S  ++ P  +AVDP +GY+F++  GKI    R GLDG  + IL  +  + I D+TLD+
Sbjct: 2014 VASN-LESPQLIAVDPVNGYIFYAGKGKI---GRTGLDGTGKFILVNQTAI-ISDLTLDI 2068

Query: 185  KFFSAFYRNLS----------------------------------------KGNIHIISL 204
            +    ++  +                                         +GNI + ++
Sbjct: 2069 ENQVVYWCEVQTDSIWRVDYDGNMKKVLLNNTLDNVQALDLYEENIFWSDVRGNIKVANV 2128

Query: 205  SNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAH 264
             N+++  ++ ++  G+  +KDIKI+S   Q  TN CG+NNGGC  LCL+NG   +CAC+H
Sbjct: 2129 KNITNFWSV-IEADGNP-MKDIKIFSSKKQQTTNACGMNNGGCEHLCLFNGTHPICACSH 2186

Query: 265  GVVA-QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDY 323
            G V+ +D K+C  YD+F++YSRV+ I+SIH+TD  + N P   I+NST++KN I L+YDY
Sbjct: 2187 GKVSTKDYKTCEPYDSFLIYSRVSAIESIHLTDSQNRNGPIPEIQNSTLLKNTIALTYDY 2246

Query: 324  KRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKI 383
             +  ++YSD++  +INSV+FNGS+HR ++ +Q +VEGLAY  +  +L+WT NN+A+I  +
Sbjct: 2247 DQSLIYYSDVEFSSINSVYFNGSDHRQIITKQLTVEGLAYNPITKHLFWTSNNEASIRSL 2306

Query: 384  DLDS----PKAQRIVV---VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF 436
            D+ +    PK    +V   ++L   DKPRGI ++ C + IYWTNWN    SIQRA+ SG+
Sbjct: 2307 DMSNITHDPKTNAGLVKELIKLKPTDKPRGIAVEPCLAMIYWTNWNPLSASIQRAYPSGY 2366

Query: 437  GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMA 496
            G ESIITTDI MPNA+ LD+QA+KL+W DAR DKIER DYDG NR+VL+  +P HPF MA
Sbjct: 2367 GLESIITTDIRMPNAITLDYQAKKLYWADARYDKIERADYDGRNRVVLAHSTPKHPFAMA 2426

Query: 497  VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNG 556
            VYG+ +FWTDW++HAV+RANKY+G +V  LR +I RPMGIVA+      C+  PCR LNG
Sbjct: 2427 VYGDLLFWTDWILHAVIRANKYSGSDVLWLRNDIVRPMGIVAVQKIDQDCSADPCRVLNG 2486

Query: 557  NCDDICKLDETGQVVCSCFTGKVLMEDNRSCT--INTVCSEHDFKCSDGMCIPFNQTCDR 614
             C+D+C +D  G++ CSC  G VL  D + C   +++ CS  +F CS G CIPF  TCD+
Sbjct: 2487 GCEDVCMIDAAGKIKCSCTQG-VLASDGKRCVPDLSSRCSAEEFSCSVGGCIPFYLTCDK 2545

Query: 615  VYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
            + +C D SDE   +C  R C  G+F C N +CI  S 
Sbjct: 2546 ITHCIDGSDEMASFCDSRQCPKGFFLCTNRRCIPESQ 2582

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300186|ref|XP_320185.4| AGAP012372-PA [Anopheles gambiae str. PEST] gi|157013036|gb|EAA00393.5| AGAP012372-PA [Anopheles gambiae str. PEST]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/633 (45%), Positives = 394/633 (62%), Gaps = 63/633 (9%)

Query: 70   DGTKRETVVSQKKYPAVTACNLH----IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL 125
            DG+ RE ++S  +   V    L     IA+DW+A+NIYW+D K N+IEVARL G  RYV+
Sbjct: 1969 DGSAREVIISNFEQ-VVDGSTLDWLGGIAIDWVAENIYWTDQKRNLIEVARLNGTLRYVV 2027

Query: 126  ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLK 185
             S  V+ P  LA+DP  GYLF+   G I    R GLDG    IL       I D+ LDL 
Sbjct: 2028 ASD-VESPQLLAIDPIQGYLFYVTRGTI---GRMGLDGSGNFILVNRS-SAISDLALDLD 2082

Query: 186  ----------------------------------------FFSAFYRNLSKGNIHIISLS 205
                                                    F  + Y   S+GNI+   LS
Sbjct: 2083 NQVVYWCETSTDTIWKVDYDGNLKRLLLNGTSHNPKSLDLFGDSIYWADSRGNIYEAGLS 2142

Query: 206  NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHG 265
            N+ +  ++ ++    S LKDIK++S   Q+ TN CGV+NGGC ELCL+NG   +CAC+HG
Sbjct: 2143 NIFNYRSV-VEALEVSSLKDIKVFSSRKQSKTNACGVSNGGCQELCLFNGTHPICACSHG 2201

Query: 266  -VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYK 324
             + + D K+C  Y+ F+++SR + I+SIHMTD +++N P   I+NS+ +KN I LSYDY+
Sbjct: 2202 KISSADLKTCEPYENFLIFSRQSAIESIHMTDANNINGPIPEIKNSSYLKNTIALSYDYE 2261

Query: 325  RKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID 384
            ++ +FYSDI   TIN VFFNG+NHR ++ +Q +VEGLA+  +   L+WT NN+A I  +D
Sbjct: 2262 QQLIFYSDIDHSTINCVFFNGTNHRRIVTKQLTVEGLAFNVLTRVLFWTSNNEAAIRSLD 2321

Query: 385  LDS-----PKAQRIVV---VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF 436
            L+      P A   +V   ++L   DKPRGI ++ C + +YWTNWN H  SIQRA+ SG+
Sbjct: 2322 LNKASLTDPAANAELVQDVIKLRATDKPRGIAVEPCLAMVYWTNWNQHAASIQRAYPSGY 2381

Query: 437  GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMA 496
            G ESIIT+DI MPNAL LD+QA KL+W DA LDK+ER DYDG +R+VL+  +P HPF +A
Sbjct: 2382 GLESIITSDIQMPNALTLDYQARKLYWADALLDKVERTDYDGKHRVVLAHSTPKHPFALA 2441

Query: 497  VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNG 556
            V+G+ +FWTD  +HAV+RANKY+G ++  LR++I +PMGIVA+      C+  PC+ +NG
Sbjct: 2442 VFGDLLFWTDLTVHAVIRANKYSGSDIVLLRRDIAQPMGIVAVQQIDKECSADPCQVMNG 2501

Query: 557  NCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTV--CSEHDFKCSDGMCIPFNQTCDR 614
             C+D+C +D  G+V C C  G VL  D + C   +V  CS  +F C++G CIPF+ TCD 
Sbjct: 2502 FCEDVCLIDAAGKVECHCTQG-VLAADGQRCIPKSVSNCSSSEFSCTNGNCIPFHLTCDG 2560

Query: 615  VYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
            V NC D SDE + +CA R C  G+F+C+N +CI
Sbjct: 2561 VKNCLDGSDELVTFCAHRPCPDGFFRCNNARCI 2593

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753139|ref|XP_001958875.1| GF12345 [Drosophila ananassae] gi|190620173|gb|EDV35697.1| GF12345 [Drosophila ananassae]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/669 (42%), Positives = 400/669 (59%), Gaps = 65/669 (9%)

Query: 35   STLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNL--H 92
            S +S  S +  +     ++W +   ++ +I     DGT+RET++           +    
Sbjct: 1942 SRVSSASFVDYFAATDTLYWGD--NELGSISRVKRDGTQRETILEAINVAGYKQQDWLGG 1999

Query: 93   IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 152
            IA+DW+A NIYWSD K N+IEVARL G +RYV++S  VD+P+ALAVDP  G LF+     
Sbjct: 2000 IAIDWVAGNIYWSDTKRNLIEVARLDGSHRYVVVSN-VDKPTALAVDPLQGMLFYVTQQH 2058

Query: 153  IPLIARAGLDGKKQTILAQEIIM--PIKDITLDLKFFSAFY------------------- 191
            I    R GLDG +  IL  +      +  + LD++    ++                   
Sbjct: 2059 I---GRVGLDGSQPFILVNQTRANWAVGSLVLDIEATKVYWCERYPDALMKVDYDGNLRE 2115

Query: 192  ------------------------RNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIK 227
                                       ++G I +  L+NLS  S + ++   D+ ++D+K
Sbjct: 2116 QLLNETLNNPVALAKMGDYLYWAENKYNEGTIKVAPLANLSQ-SKVVLQTEQDA-IRDLK 2173

Query: 228  IYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVN 287
            IYSK  Q G+NPC   NGGC +LCL+NG +A+CACAH  ++ DG SC  Y+ F+++S  +
Sbjct: 2174 IYSKHIQRGSNPCATANGGCEQLCLFNGTTAICACAHSRLSADGTSCEPYENFLLFSYRS 2233

Query: 288  RIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN 347
             I+SIHMTD S+ N P + I NST+M+N+I +SY+Y+ + ++YSD+Q  TIN V FNG+ 
Sbjct: 2234 NIESIHMTDHSNKNWPVQMISNSTLMRNVIAISYNYEEQLVYYSDVQLSTINQVHFNGTG 2293

Query: 348  HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL-------DSPKAQRIVVVRLGQ 400
             RVLL +Q  VEGLAY+ V+  L+WT NN+A I  ++L       D    Q   V++L +
Sbjct: 2294 QRVLLGQQERVEGLAYDIVNEQLFWTSNNNAAIRSVELRHLDLVSDWNHKQVKNVLKLRE 2353

Query: 401  HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEK 460
             DKPRGI ++ C   IYWTNWN   P IQRAF +G+G ESII TDI MPNAL LD + +K
Sbjct: 2354 KDKPRGIAVEPCLGMIYWTNWNEEAPCIQRAFLTGYGVESIIKTDIKMPNALTLDLEQQK 2413

Query: 461  LFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTG 520
            L+W DARLDKIER +YDG++R+VL+  +P H F MAVYG+ +FWTDWV+HAV+RANK+TG
Sbjct: 2414 LYWADARLDKIERANYDGSHRVVLAHSTPKHAFAMAVYGDLLFWTDWVLHAVVRANKFTG 2473

Query: 521  EEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL 580
             +V  LR+++ RPMGIVA+ ++   C    C+ LNG C+D+C L+ +GQ  C C  G VL
Sbjct: 2474 TDVLFLREHVTRPMGIVAVQNSSVNCDSNQCKILNGQCEDVCILNASGQATCHCTQG-VL 2532

Query: 581  MEDNRSC--TINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGY 638
              D R C   +NT C +  + C  G CIP   TCD V +C D SDE   YC  R+C   +
Sbjct: 2533 AADGRRCIAPVNTNCGKSQYNCHSGECIPMELTCDNVTHCADGSDEWRSYCIFRECPETH 2592

Query: 639  FKCDNNKCI 647
            F C N++CI
Sbjct: 2593 FMCQNHRCI 2601

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123466|ref|XP_002006227.1| GI18681 [Drosophila mojavensis] gi|193911295|gb|EDW10162.1| GI18681 [Drosophila mojavensis]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/660 (43%), Positives = 399/660 (60%), Gaps = 73/660 (11%)

Query: 52   MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLH-------IAVDWIAQNIYW 104
            ++W +   ++ TI     DG+ RETV+      A+T  +         IA+DWIA NIYW
Sbjct: 1945 LYWGD--SELGTISRVRRDGSHRETVLE-----AITLADFKHQDWLGGIAIDWIAGNIYW 1997

Query: 105  SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 164
            SD K N+IEV+RL G  RYV++S  V++P+ALAVDP  G LF+        I R GLDG 
Sbjct: 1998 SDMKRNIIEVSRLDGSNRYVVVSN-VERPTALAVDPVQGMLFFVTD---QYIGRTGLDGS 2053

Query: 165  KQTILAQEIIM--PIKDITLDLKFFSAFY--RN--------------------------- 193
            +  +L  +     P+K + +D+     ++  RN                           
Sbjct: 2054 QLFVLVNQTHTNWPVKSLIVDMDATKVYWCSRNALMKVDYDGNLREELLNDTVNDIVALA 2113

Query: 194  ------------LSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCG 241
                         +KG + +  L+NLS    + +K   D+ ++D+KIYSK  Q GTNPC 
Sbjct: 2114 KLGDYLYWAGNSYNKGVVKVAPLANLSQSREV-LKTEQDA-IRDLKIYSKRVQQGTNPCA 2171

Query: 242  VNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN 301
             NNGGC  LCLYNG + VCAC++  +A DG SC  YD F+++S  + I+SIHMT+ ++ N
Sbjct: 2172 QNNGGCEHLCLYNGTNTVCACSYSRLAADGLSCEPYDNFLLFSYRSNIESIHMTEHANKN 2231

Query: 302  SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL 361
             P + I N T+M+N++ +SY+Y+ + ++YSD+Q  TIN V FNGS  R L+ +QG VEGL
Sbjct: 2232 WPVQIITNETLMRNVVAISYNYEAQLVYYSDVQLSTINQVHFNGSGQRQLIMQQGRVEGL 2291

Query: 362  AYEYVHNYLYWTCNNDATINKIDLD--SPKAQRIV-----VVRLGQHDKPRGIDIDSCDS 414
            AY+ V++ L+WT NNDA I  ++L   SP+A++ +     V+RL   DKPRGI ++ C  
Sbjct: 2292 AYDMVNDQLFWTSNNDAAIRSLELQYLSPEAEKNLQHVRNVLRLQSKDKPRGISVEPCLG 2351

Query: 415  RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERC 474
             IYWTNWN   PSIQRA+ +G+G E II TDI MPNAL LD + ++L+W DARLDKIER 
Sbjct: 2352 MIYWTNWNEESPSIQRAYLTGYGVERIIRTDIKMPNALTLDLEHQQLYWADARLDKIERV 2411

Query: 475  DYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
            +YDGTNR+VL+  +P H F MAVYG+ +FWTDWV+HAV+RANKYTG +V  LR+N+ RPM
Sbjct: 2412 NYDGTNRVVLAHTTPKHAFAMAVYGDLLFWTDWVLHAVVRANKYTGTDVLFLRENVARPM 2471

Query: 535  GIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC--TINTV 592
            GI+A+ ++   C    C+ LNG C+D+C L + G   C C  G VL  D R C   ++T 
Sbjct: 2472 GIIAVQNSSINCDANQCKILNGLCEDVCILSKDGLASCHCTQG-VLAPDGRRCIAPMHTN 2530

Query: 593  CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT 652
            C +  + C  G CIP   TCD V +C D SDE   YC +R C   YF C N++CI    T
Sbjct: 2531 CGKSQYNCHSGECIPLELTCDNVTHCLDGSDELRNYCVIRKCPENYFMCQNHRCIAQEQT 2590

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	652
FB|FBgn0053087	4699	LRP1 "LDL receptor protein 1"	0.911	0.126	0.429	7.9e-138
UNIPROTKB|P98157	4543	LRP1 "Low-density lipoprotein	0.926	0.132	0.391	1.5e-130
UNIPROTKB|E1BGJ0	4544	LRP1 "Uncharacterized protein"	0.923	0.132	0.389	2.8e-129
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.923	0.132	0.393	4.4e-129
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.923	0.132	0.393	4.5e-129
MGI|MGI:96828	4545	Lrp1 "low density lipoprotein	0.923	0.132	0.391	1.2e-128
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.923	0.132	0.391	1.9e-128
UNIPROTKB|Q07954	4544	LRP1 "Prolow-density lipoprote	0.923	0.132	0.389	8.4e-128
ZFIN|ZDB-GENE-070912-401	4456	lrp1bb "low density lipoprotei	0.921	0.134	0.361	2.2e-127
UNIPROTKB|F1NCT3	4576	LRP1B "Uncharacterized protein	0.917	0.130	0.360	2.9e-126

FB|FBgn0053087 LRP1 "LDL receptor protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1327 (472.2 bits), Expect = 7.9e-138, Sum P(3) = 7.9e-138
 Identities = 269/627 (42%), Positives = 393/627 (62%)

Query:    40 ISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWI 98
             +  IA+ W V G ++WS+  + +  IE+A +DG+ R  VVS  + P  TA    +AVD +
Sbjct:  2027 LGGIAIDW-VAGNIYWSDTKRNI--IEVARLDGSHRYVVVSNLEKP--TA----LAVDPL 2077

Query:    99 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQ--PSALAVDPESGYLFWSESGKIP-L 155
              Q + +   ++++  V  L G   +VL++         +L +D E+  ++W E  + P  
Sbjct:  2078 -QGLLFYVTQQHIGRVG-LDGSQPFVLVNQTRANWAVGSLVLDIEATKVYWCE--RYPDA 2133

Query:   156 IARAGLDGK-KQTILAQEIIMPIKDITL-DLKFFSAFYRNLSKGNIHIISLSNLSDVSTI 213
             + +   DG  ++ +L + +  P+    + D  +++      ++G I +  L+NLS  S +
Sbjct:  2134 LMKVDYDGNLREQLLNESLNNPVALAKMGDYLYWAE--NKYNEGIIRVAPLANLSQ-SKV 2190

Query:   214 SMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKS 273
              ++   D+ ++D+KIYSK  Q G+NPC  +NG C +LCL+NG SAVCACAH  +A DG S
Sbjct:  2191 VLQTEQDA-IRDLKIYSKHLQRGSNPCAHSNGACEQLCLFNGTSAVCACAHSRLASDGYS 2249

Query:   274 CSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDI 333
             C  Y+ F+++S  + I+SIHMTD +D N P + I N+++M+N+I ++Y+Y+ + ++YSD+
Sbjct:  2250 CEPYENFLLFSYRSNIESIHMTDHADKNWPVQMISNTSLMRNVIAITYNYEEQLVYYSDV 2309

Query:   334 QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL-------D 386
             Q  TIN V FNG+ HRVLLE+Q  VEGLAY+ V+  L+WT NN+ATI  ++L       D
Sbjct:  2310 QLSTINQVHFNGTGHRVLLEQQQRVEGLAYDIVNEQLFWTSNNNATIRSVELRHLSEHAD 2369

Query:   387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDI 446
               +     V+ L + DKPRGI ++ C   IYWTNWN   P IQR++ +G+GTE II TDI
Sbjct:  2370 QNQVHVKKVLSLREDDKPRGIAVEPCLGMIYWTNWNEGSPCIQRSYLTGYGTEVIIKTDI 2429

Query:   447 TMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTD 506
              MPNAL LD + +KL+W DARLDKIER +YDG+NR+VL+  +P H F MAVYG+ +FWTD
Sbjct:  2430 KMPNALTLDLEQQKLYWADARLDKIERTNYDGSNRVVLAHSTPKHAFAMAVYGDLLFWTD 2489

Query:   507 WVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDE 566
             WV+HAV+RANKYTG +V  LR+++ RPMGIVA+ +    C    C+ LNG C+D+C L++
Sbjct:  2490 WVLHAVVRANKYTGTDVLFLREHVTRPMGIVAVQNTSINCDANQCKILNGQCEDVCILNK 2549

Query:   567 TGQVVCSCFTGKVLMEDNRSCT--INTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
             +GQ  C C  G VL  D R C   +NT C    + C  G CIP   TCD V +C D SDE
Sbjct:  2550 SGQATCHCTQG-VLAPDGRRCIAPVNTSCGLSQYNCHSGECIPLELTCDNVTHCADGSDE 2608

Query:   625 GILYCAMRDCRPGYFKCDNNKCILSSH 651
                YC  R C   +F C N++CI   H
Sbjct:  2609 FRSYCIFRQCPETHFMCQNHRCIPKEH 2635

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)]

 Score = 1208 (430.3 bits), Expect = 1.5e-130, Sum P(2) = 1.5e-130
 Identities = 247/631 (39%), Positives = 382/631 (60%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1957 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2010

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD E G L+W ++
Sbjct:  2011 VHPEKGYLFWTEWGQYPR---IERSRLDGTERMVLVNVSISWPNGISVDYEDGKLYWCDA 2067

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              +   I R  L+ G+ + ++     M +  +++   +     R  + G+I   S  N ++
Sbjct:  2068 -RTDKIERIDLETGENREVVLSSDNMDMFSVSVFEDYIYWSDRTHANGSIKRGSKDNATE 2126

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++S++      LKDIK++++  Q GTN C  NNGGC +LCL+ G     CACAHG+++
Sbjct:  2127 --SVSLRTGIGVQLKDIKVFNRARQKGTNVCAQNNGGCQQLCLFRGGGRRTCACAHGMLS 2184

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC +YD +++YS    + SIH++D+++LN+P +   ++  MKN+I L++DY+  T 
Sbjct:  2185 EDGVSCRDYDGYLLYSERTILKSIHLSDENNLNAPIKPFEDAEHMKNVIALAFDYRYGTK 2244

Query:   328 ----LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKI 383
                 +FYSDI  G I  +  +G+  R ++E  GSVEGLAY    + LYWT    +TI + 
Sbjct:  2245 GSNRIFYSDIHFGNIQQINDDGTGRRTIVENVGSVEGLAYHRGWDTLYWTSYTTSTITRH 2304

Query:   384 DLDSPKA---QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTES 440
              +D  +    +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG     
Sbjct:  2305 TVDQSRLGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNEQHPSIMRATLSGANVLI 2364

Query:   441 IITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE 500
             II  DI  PN LA+DH+AEK+++ DA LDKIERC+YDG++R V+ K  P+HPF +AVYG+
Sbjct:  2365 IIDQDIRTPNGLAIDHRAEKIYFSDATLDKIERCEYDGSHRHVILKSEPVHPFGLAVYGD 2424

Query:   501 FIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGNCD 559
             +IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ D+C  +PCR  NG C 
Sbjct:  2425 YIFWTDWVRRAVQRANKYVGTDMKLLRVDIPQQPMGIIAVANDTDSCELSPCRVNNGGCQ 2484

Query:   560 DICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVYNC 618
             D+C L   G V CSC   +VL ED     +N+ C+ HD F+C +G CI F++TCD V +C
Sbjct:  2485 DLCLLTPKGHVNCSCRGERVLQEDFTCKALNSTCNVHDEFECGNGDCIDFSRTCDGVVHC 2544

Query:   619 HDKSDEGILYCAMRDCRPGYFKCDNNKCILS 649
              DKSDE   YC+ R C+ G+  C N +C+ S
Sbjct:  2545 KDKSDEKQSYCSSRKCKKGFLHCMNGRCVAS 2575

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1189 (423.6 bits), Expect = 2.8e-129, Sum P(2) = 2.8e-129
 Identities = 246/631 (38%), Positives = 378/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1960 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2013

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  2014 VHPEKGYLFWTEWGQYPR---IERSRLDGSERVVLVNVSISWPNGISVDYQDGKLYWCDA 2070

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              +   I R  L+ G+ + ++     M +  +++  +F     R  + G+I   S  N +D
Sbjct:  2071 -RTDKIERIDLETGEDREVVLSSNNMDMFSVSVFEEFIYWSDRTHANGSIKRGSKDNATD 2129

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V+NGGC +LCLY G     CACAHG++A
Sbjct:  2130 --SVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVDNGGCQQLCLYRGNGQRACACAHGMLA 2187

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + S+H++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2188 EDGASCREYAGYLLYSERTILKSVHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2247

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2248 PGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2307

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2308 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNEQHPSIMRAALSGANV 2367

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2368 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2427

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2428 GEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGG 2487

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L +D     +N+ C   D F+C++G CI F  TCD V 
Sbjct:  2488 CQDLCLLTHQGHVNCSCRGGRILQDDFTCQAVNSSCRAQDEFECANGECINFGLTCDGVS 2547

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C+N +C+
Sbjct:  2548 HCKDKSDEKPSYCNTRRCKKTFRQCNNGRCV 2578

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1187 (422.9 bits), Expect = 4.4e-129, Sum P(2) = 4.4e-129
 Identities = 248/631 (39%), Positives = 377/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1945 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 1998

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  1999 VHPEKGYLFWTEWGQYPR---IERSRLDGTERVVLVNVSISWPNGISVDYQDGKLYWCDA 2055

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              +   I R  L+ G+ + ++     M +  +++   F     R  + G+I   S  N +D
Sbjct:  2056 -RTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGSKDNATD 2114

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V NGGC +LCLY G     CACAHG++A
Sbjct:  2115 --SVPLRTGIGVQLKDIKVFNRDRQRGTNVCAVANGGCQQLCLYRGGGQRACACAHGMLA 2172

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + SIH++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2173 EDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2232

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2233 PGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2292

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2293 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNEQHPSIMRAALSGANV 2352

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2353 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2412

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2413 GEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGIIAVANDTNSCELSPCRVNNGG 2472

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L ED     +N+ C   D F+C++G CI F+ TCD V 
Sbjct:  2473 CQDLCLLTHQGHVNCSCRGGRILQEDFTCRAMNSSCRAQDEFECANGECINFSLTCDGVS 2532

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C+N +C+
Sbjct:  2533 HCKDKSDEKPSYCNSRRCKKTFRQCNNGRCV 2563

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1187 (422.9 bits), Expect = 4.5e-129, Sum P(2) = 4.5e-129
 Identities = 248/631 (39%), Positives = 377/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1961 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2014

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  2015 VHPEKGYLFWTEWGQYPR---IERSRLDGTERVVLVNVSISWPNGISVDYQDGKLYWCDA 2071

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              +   I R  L+ G+ + ++     M +  +++   F     R  + G+I   S  N +D
Sbjct:  2072 -RTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGSKDNATD 2130

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V NGGC +LCLY G     CACAHG++A
Sbjct:  2131 --SVPLRTGIGVQLKDIKVFNRDRQRGTNVCAVANGGCQQLCLYRGGGQRACACAHGMLA 2188

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + SIH++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2189 EDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2248

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2249 PGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2308

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2309 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNEQHPSIMRAALSGANV 2368

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2369 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2428

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2429 GEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGIIAVANDTNSCELSPCRVNNGG 2488

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L ED     +N+ C   D F+C++G CI F+ TCD V 
Sbjct:  2489 CQDLCLLTHQGHVNCSCRGGRILQEDFTCRAMNSSCRAQDEFECANGECINFSLTCDGVS 2548

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C+N +C+
Sbjct:  2549 HCKDKSDEKPSYCNSRRCKKTFRQCNNGRCV 2579

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)]

 Score = 1183 (421.5 bits), Expect = 1.2e-128, Sum P(2) = 1.2e-128
 Identities = 247/631 (39%), Positives = 377/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1962 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2015

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  2016 VHPEKGYLFWTEWGHYPR---IERSRLDGTERVVLVNVSISWPNGISVDYQGGKLYWCDA 2072

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              ++  I R  L+ G+ + ++     M +  +++   F     R  + G+I      N +D
Sbjct:  2073 -RMDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGCKDNATD 2131

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V NGGC +LCLY G     CACAHG++A
Sbjct:  2132 --SVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQLCLYRGGGQRACACAHGMLA 2189

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + SIH++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2190 EDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2249

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2250 PGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2309

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2310 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNELHPSIMRAALSGANV 2369

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2370 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2429

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2430 GEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGG 2489

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L ED     +N+ C   D F+C++G CI F+ TCD V 
Sbjct:  2490 CQDLCLLTHQGHVNCSCRGGRILQEDFTCRAVNSSCRAQDEFECANGECISFSLTCDGVS 2549

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C+N +C+
Sbjct:  2550 HCKDKSDEKPSYCNSRRCKKTFRQCNNGRCV 2580

GO:0002020 "protease binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0032370 "positive regulation of lipid transport" evidence=IMP

GO:0032374 "regulation of cholesterol transport" evidence=IMP

GO:0032403 "protein complex binding" evidence=ISO

GO:0032429 "regulation of phospholipase A2 activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051222 "positive regulation of protein transport" evidence=ISO

GO:0097242 "beta-amyloid clearance" evidence=IMP

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IMP

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 1181 (420.8 bits), Expect = 1.9e-128, Sum P(2) = 1.9e-128
 Identities = 247/631 (39%), Positives = 377/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1962 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2015

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  2016 VHPEKGYLFWTEWGHYPR---IERSRLDGTERVVLVNVSISWPNGISVDYQGGKLYWCDA 2072

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              ++  I R  L+ G+ + ++     M +  +++   F     R  + G+I      N +D
Sbjct:  2073 -RMDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGCKDNATD 2131

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V NGGC +LCLY G     CACAHG++A
Sbjct:  2132 --SVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQLCLYRGGGQRACACAHGMLA 2189

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + SIH++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2190 EDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2249

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2250 PGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2309

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2310 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNELHPSIMRAALSGANV 2369

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2370 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2429

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANKY G ++  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2430 GEHIFWTDWVRRAVQRANKYVGSDMKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGG 2489

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L ED     +N+ C   D F+C++G CI F+ TCD V 
Sbjct:  2490 CQDLCLLTHQGHVNCSCRGGRILQEDFTCRAMNSSCRAQDEFECANGECISFSLTCDGVS 2549

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C+N +C+
Sbjct:  2550 HCKDKSDEKPSYCNSRRCKKTFRQCNNGRCV 2580

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 1175 (418.7 bits), Expect = 8.4e-128, Sum P(2) = 8.4e-128
 Identities = 246/631 (38%), Positives = 375/631 (59%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ--KKYPAVTACN 90
             T+ + ++  IAV W + G ++W++    V  IE+A ++G+ R  V+SQ   K  A+T   
Sbjct:  1961 TNGIGRVEGIAVDW-IAGNIYWTDQGFDV--IEVARLNGSFRYVVISQGLDKPRAIT--- 2014

Query:    91 LHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             +H    ++    +   P+   IE +RL G  R VL++  +  P+ ++VD + G L+W ++
Sbjct:  2015 VHPEKGYLFWTEWGQYPR---IERSRLDGTERVVLVNVSISWPNGISVDYQDGKLYWCDA 2071

Query:   151 GKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD 209
              +   I R  L+ G+ + ++     M +  +++   F     R  + G+I   S  N +D
Sbjct:  2072 -RTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTHANGSIKRGSKDNATD 2130

Query:   210 VSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAHGVVA 268
               ++ ++      LKDIK++++D Q GTN C V NGGC +LCLY G     CACAHG++A
Sbjct:  2131 --SVPLRTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQLCLYRGRGQRACACAHGMLA 2188

Query:   269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT- 327
             +DG SC EY  +++YS    + SIH++D+ +LN+P +   +   MKN+I L++DY+  T 
Sbjct:  2189 EDGASCREYAGYLLYSERTILKSIHLSDERNLNAPVQPFEDPEHMKNVIALAFDYRAGTS 2248

Query:   328 ------LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATIN 381
                   +F+SDI  G I  +  +GS    ++E  GSVEGLAY    + LYWT    +TI 
Sbjct:  2249 PGTPNRIFFSDIHFGNIQQINDDGSRRITIVENVGSVEGLAYHRGWDTLYWTSYTTSTIT 2308

Query:   382 K--IDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT 438
             +  +D   P A +R  V+ +   D PR   +D C + ++WTNWN   PSI RA  SG   
Sbjct:  2309 RHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLMFWTNWNEQHPSIMRAALSGANV 2368

Query:   439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
              ++I  DI  PN LA+DH+AEKL++ DA LDKIERC+YDG++R V+ K  P+HPF +AVY
Sbjct:  2369 LTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHRYVILKSEPVHPFGLAVY 2428

Query:   499 GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLNGN 557
             GE IFWTDWV  AV RANK+ G  +  LR +I ++PMGI+A++++ ++C  +PCR  NG 
Sbjct:  2429 GEHIFWTDWVRRAVQRANKHVGSNMKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGG 2488

Query:   558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHD-FKCSDGMCIPFNQTCDRVY 616
             C D+C L   G V CSC  G++L +D     +N+ C   D F+C++G CI F+ TCD V 
Sbjct:  2489 CQDLCLLTHQGHVNCSCRGGRILQDDLTCRAVNSSCRAQDEFECANGECINFSLTCDGVP 2548

Query:   617 NCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
             +C DKSDE   YC  R C+  + +C N +C+
Sbjct:  2549 HCKDKSDEKPSYCNSRRCKKTFRQCSNGRCV 2579

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=NAS

GO:0042954 "lipoprotein transporter activity" evidence=NAS

GO:0034185 "apolipoprotein binding" evidence=IDA;IPI

GO:0004872 "receptor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070325 "lipoprotein particle receptor binding" evidence=IC

GO:0032429 "regulation of phospholipase A2 activity" evidence=ISS

GO:0032374 "regulation of cholesterol transport" evidence=ISS

GO:0032370 "positive regulation of lipid transport" evidence=ISS

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0043277 "apoptotic cell clearance" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=ISS

GO:0032403 "protein complex binding" evidence=IDA

GO:0097242 "beta-amyloid clearance" evidence=TAS

ZFIN|ZDB-GENE-070912-401 lrp1bb "low density lipoprotein receptor-related protein 1Bb" [Danio rerio (taxid:7955)]

 Score = 1111 (396.2 bits), Expect = 2.2e-127, Sum P(3) = 2.2e-127
 Identities = 230/636 (36%), Positives = 374/636 (58%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAVTACNL 91
             T+ ++++  IAV W + G ++W++    +  IE+A ++G  R  V+S+    P   A  +
Sbjct:  1836 TTGINRVEGIAVDW-IAGNLYWTDHGLNL--IEIARLNGLYRSVVISEGLDQPRAIA--V 1890

Query:    92 HIAVDWIAQNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             H    ++    +W++  +N  I  ARL G  +  L+S G+  P+ + +D E   L+W ++
Sbjct:  1891 HPQRGYL----FWTEWGKNPCIGRARLDGSDQVTLVSSGIAWPNGITIDYEENRLYWCDA 1946

Query:   151 GKIPLIARAGLDGKKQTILAQEIIMPIKDITL-DLKFFSAF-Y---RNLSKGNIHIISLS 205
              +   I R  L+    T   +EI++   ++ L  +  F A+ Y   R  + G+I     S
Sbjct:  1947 -RTDKIERINLE----TGEGREIVLSAANVDLFSVAVFGAYIYWSDRAHANGSIRRGFKS 2001

Query:   206 NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSA-VCACAH 264
             + +D   ++M+      LKD+K+++K  + GTNPC  +NGGC +LC + G     C+CAH
Sbjct:  2002 DATDA--VTMRSGLGVNLKDVKVFNKGREKGTNPCARSNGGCQQLCFHLGSGRRTCSCAH 2059

Query:   265 GVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYK 324
             G +A+DG +C  Y  +++YS    + SIH++D+SDLNSP +   N    KN+I L++DY+
Sbjct:  2060 GYLAEDGFACQRYGGYLLYSERTILKSIHLSDESDLNSPLQPFENPDYFKNVIALAFDYR 2119

Query:   325 RKT-----LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDAT 379
             +++     +F+SDI  G I  +  + S  +V++E  GSVEGLAY    + +YWT +  ++
Sbjct:  2120 QESSPHNRIFFSDIHFGNIQMINDDWSGRQVIVENVGSVEGLAYHRAWDTIYWTSSTTSS 2179

Query:   380 INKIDLDSPKAQ---RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF 436
             I++  +D  +     R  VV + + D P  + +D C + ++WTNWN   PSI R+  +G 
Sbjct:  2180 ISRYTVDQSRQGAFGRQAVVTMSEDDHPHVLALDECQNLMFWTNWNEQRPSIMRSTLAGN 2239

Query:   437 GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMA 496
               + II+TD+  PN L +DH+AEKL++ D  L KIERC+YDG++R V+ +  P   F +A
Sbjct:  2240 NMKVIISTDVFTPNGLTIDHKAEKLYFSDGSLGKIERCEYDGSHRHVIVRSGPGTFFGLA 2299

Query:   497 VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLN 555
             ++G +IFW+DW   AVLR NK+TG E   LR +I  +PMGI+A++ + + C  +PCR  N
Sbjct:  2300 IHGNYIFWSDWTRRAVLRTNKFTGGETKVLRADIPHQPMGIIAVAKDTNNCELSPCRVQN 2359

Query:   556 GNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH-DFKCSDGMCIPFNQTCDR 614
             G C D+C L   G V CSC   +VL++DNR  +  + C+ H +F+C +G CI +  TCD 
Sbjct:  2360 GGCGDLCLLTPDGTVNCSCRGERVLLDDNRCVSKTSSCNIHTEFECGNGECIDYQLTCDG 2419

Query:   615 VYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSS 650
             + +C DKSDE + YC  R CR G+  C N +C+ +S
Sbjct:  2420 IAHCKDKSDEKMQYCDNRSCRKGHRPCYNRRCVANS 2455

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NCT3 LRP1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1090 (388.8 bits), Expect = 2.9e-126, Sum P(3) = 2.9e-126
 Identities = 228/633 (36%), Positives = 368/633 (58%)

Query:    34 TSTLSKISSIAV-WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAVTACNL 91
             T+ L ++  IAV W + G ++W++    +  IE+A ++G+ R  ++SQ    P   A  +
Sbjct:  1926 TNGLGRVEGIAVDW-IAGNIYWTDHGFNL--IEVARLNGSFRYVIISQGLDQPRSIA--V 1980

Query:    92 HIAVDWIAQNIYWSDPKE-NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 150
             H    ++    +W++  +   I  A L G  + VL+S G+  P+ +++D E   L+W ++
Sbjct:  1981 HPEKGYL----FWTEWGQIPCIGKAYLDGSEKVVLVSLGIVWPNGISIDYEENKLYWCDA 2036

Query:   151 GKIPLIARAGLDGKKQTILAQEIIMPIKDITL-DLKFFSAF-Y---RNLSKGNIHIISLS 205
              +   I R  L+        +EI++   ++ +  +  F A+ Y   R  + G+I     +
Sbjct:  2037 -RTDKIERIDLESGGN----REIVLSGSNVDMFSVAVFGAYIYWSDRAHANGSIRRGHKN 2091

Query:   206 NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNG-VSAVCACAH 264
               +D   ++M+      LK++K++++  + GTN C  NNGGC +LCLY G     CACAH
Sbjct:  2092 EATDA--VTMRTGLGINLKEVKVFNRAREKGTNVCAKNNGGCHQLCLYRGKAQRTCACAH 2149

Query:   265 GVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYK 324
             G +A+DG +C  ++ +++YS    + SIH++D+++LNSP     N    KN+I L++DY 
Sbjct:  2150 GYLAEDGITCLRHEGYLLYSGRTILKSIHLSDENNLNSPVRPYENPEYFKNVIALAFDYS 2209

Query:   325 RK-----TLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDAT 379
              K      +F+SD   G I  +  N +  RVL+E  GSVEGLAY    + LYWT +  ++
Sbjct:  2210 LKGRGTNRIFFSDAHFGNIQVIKDNWAGRRVLIENVGSVEGLAYHRAWDTLYWTSSTTSS 2269

Query:   380 INKIDLDSPKA---QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF 436
             I +  +D  +     R  V+ + + D P  + +D C + ++WTNWN  LPSI R+  SG 
Sbjct:  2270 ITRHTVDQRRRGAFNREAVITMSEDDHPHVLALDECQNLMFWTNWNEQLPSIMRSTLSGK 2329

Query:   437 GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMA 496
               + II+TDI  PN L +DH+AEKL++ D  L KIERC+YDG+ R V+ K  P     +A
Sbjct:  2330 NAQVIISTDILTPNGLTIDHRAEKLYFSDGSLGKIERCEYDGSQRYVIVKSGPGTFLSLA 2389

Query:   497 VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAISDNLDACAKTPCRHLN 555
             VY ++IFW+D V  A+LR++KYTG +   LR +I  +PMGI+A++++ ++C  +PC  +N
Sbjct:  2390 VYDDYIFWSDGVRRAILRSSKYTGGDTKVLRSDIPHQPMGIIAVANDTNSCELSPCAQMN 2449

Query:   556 GNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH-DFKCSDGMCIPFNQTCDR 614
             G C D+C L   G+V CSC   ++L++DNR  T N+ C+ + +F+C +G CI +  TCD 
Sbjct:  2450 GGCHDLCLLTPDGRVNCSCRGDRILIDDNRCVTKNSTCNIYSEFECGNGECIDYQLTCDG 2509

Query:   615 VYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
               +C DKSDE + YC  R CR G+  C N +CI
Sbjct:  2510 TAHCKDKSDEKLFYCENRGCRKGFKPCSNRRCI 2542

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	652
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	4e-11
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	5e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-08
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	7e-07
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-06
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	4e-05
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	7e-05
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-04
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	0.002

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR 481
            +++++ +  PN LA+D    +L+W D  LD IE  + DGTNR
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           C  ++F+C++G CIP +  CD   +C D SDE
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           C   +F+C +G CIP +  CD V +C D SDE
Sbjct: 2   CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 92  HIAVDWIAQNIYWSDPKENVIEVARLTGQYR 122
            +AVDWI   +YW+D   +VIEVA L G  R
Sbjct: 13  GLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           + C   +F+C  G CIP +  CD   +C D SDE
Sbjct: 1   STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 123 YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 164
             L+S G+  P+ LAVD   G L+W++ G   +I  A LDG 
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGT 41

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 100 QNIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDP 140
             +YW+D      I VA L G  R  L S  +  P+ +AVDP
Sbjct: 1   GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH 456
           R+YWT+ +    SI  A  +G    ++ + D+  PN +A+D 
Sbjct: 2   RLYWTDSSLR-ASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG 435
           R ++     H  P G+ +D  + R+YWT+W   L  I+ A   G
Sbjct: 1   RTLLSSGLGH--PNGLAVDWIEGRLYWTDW--GLDVIEVANLDG 40

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 74
          L   + +AV  ++G+++W++    V  IE+A +DGT R
Sbjct: 8  LGHPNGLAVDWIEGRLYWTDWGLDV--IEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	652
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		100.0
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.53
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.33
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG4659|consensus	1899		99.16
COG3391	381	Uncharacterized conserved protein [Function unknow	99.09
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.05
KOG4659|consensus	1899		99.04
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.99
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.98
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.98
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.97
COG3391	381	Uncharacterized conserved protein [Function unknow	98.97
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.97
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.95
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.94
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.88
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.85
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.73
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.71
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.63
KOG4499|consensus	310		98.62
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.52
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.42
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.41
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.37
KOG1520|consensus	376		98.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.22
KOG1520|consensus	376		98.21
PRK04792	448	tolB translocation protein TolB; Provisional	98.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.06
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.0
PRK05137	435	tolB translocation protein TolB; Provisional	97.91
PRK04922	433	tolB translocation protein TolB; Provisional	97.86
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.86
PRK00178	430	tolB translocation protein TolB; Provisional	97.84
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.81
PRK03629	429	tolB translocation protein TolB; Provisional	97.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.79
PRK02889	427	tolB translocation protein TolB; Provisional	97.77
PRK04043	419	tolB translocation protein TolB; Provisional	97.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.68
PRK04043	419	tolB translocation protein TolB; Provisional	97.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.59
PRK05137	435	tolB translocation protein TolB; Provisional	97.56
PRK04792	448	tolB translocation protein TolB; Provisional	97.53
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.5
PRK01029	428	tolB translocation protein TolB; Provisional	97.47
PRK03629	429	tolB translocation protein TolB; Provisional	97.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.43
PRK04922	433	tolB translocation protein TolB; Provisional	97.36
PRK02889	427	tolB translocation protein TolB; Provisional	97.35
PRK00178	430	tolB translocation protein TolB; Provisional	97.27
PRK01742	429	tolB translocation protein TolB; Provisional	97.25
PRK02888	635	nitrous-oxide reductase; Validated	97.18
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.17
PRK01742	429	tolB translocation protein TolB; Provisional	97.16
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.04
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	97.04
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.95
PF12662	24	cEGF: Complement Clr-like EGF-like	96.9
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.89
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.79
KOG1219|consensus	4289		96.78
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	96.77
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.73
PF12662	24	cEGF: Complement Clr-like EGF-like	96.51
COG4946	668	Uncharacterized protein related to the periplasmic	96.32
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.26
KOG4499|consensus	310		96.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.21
PRK01029	428	tolB translocation protein TolB; Provisional	96.11
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.06
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.01
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	95.96
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.91
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	95.63
COG4946	668	Uncharacterized protein related to the periplasmic	95.31
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.28
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.24
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	95.08
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	94.99
COG5276	370	Uncharacterized conserved protein [Function unknow	94.84
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.4
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	93.86
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.85
PRK02888	635	nitrous-oxide reductase; Validated	93.58
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.55
KOG0291|consensus	893		93.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.4
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	93.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.23
smart00181	35	EGF Epidermal growth factor-like domain.	92.88
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	92.81
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	92.69
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	92.62
smart00181	35	EGF Epidermal growth factor-like domain.	92.6
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.59
smart00192	33	LDLa Low-density lipoprotein receptor domain class	91.77
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.45
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.14
KOG0315|consensus	311		91.11
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	91.06
KOG0273|consensus	524		90.41
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.32
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	89.43
KOG0266|consensus	456		88.96
cd00053	36	EGF Epidermal growth factor domain, found in epide	88.74
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	88.62
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	88.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	88.09
KOG0285|consensus	460		87.76
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.75
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	87.69
COG5276	370	Uncharacterized conserved protein [Function unknow	87.4
KOG2397|consensus	480		87.27
KOG1219|consensus	4289		87.08
KOG1446|consensus	311		86.61
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	86.52
KOG0310|consensus	487		86.23
KOG2106|consensus	626		85.71
cd00053	36	EGF Epidermal growth factor domain, found in epide	85.7
PTZ00421	493	coronin; Provisional	84.66
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	83.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	83.39
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	82.41
KOG1225|consensus	525		82.09
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	81.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	80.74
KOG0279|consensus	315		80.67
KOG4649|consensus	354		80.64
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.29

>KOG1214|consensus

Probab=100.00  E-value=1e-51  Score=436.04  Aligned_cols=292  Identities=26%  Similarity=0.501  Sum_probs=256.6

Q ss_pred             eEEEEeeecceeEEecCCCCCCCC--CceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ecc
Q psy5768         279 AFIMYSRVNRIDSIHMTDKSDLNS--PFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQ  355 (652)
Q Consensus       279 ~~Ll~s~~~~i~~i~l~~~~~~~~--p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~  355 (652)
                      .||||+++..|.+++| .+..+..  ....|..+.  ..+++||||.++++|||+|+...+|.|..|+|+..++++ .++
T Consensus       991 t~LL~aqg~~I~~lpl-ng~~~~K~~ak~~l~~p~--~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L 1067 (1289)
T KOG1214|consen  991 TFLLYAQGQQIGYLPL-NGTRLQKDAAKTLLSLPG--SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGL 1067 (1289)
T ss_pred             ceEEEeccceEEEeec-CcchhchhhhhceEeccc--ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccC
Confidence            5999999999999999 5554432  222344332  458899999999999999999999999999999999999 899


Q ss_pred             CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG  435 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG  435 (652)
                      .+|+||||||++||+||||+...+|+++.|+|+.  ++. +..+++.+||+|++||.+|.||||||++.+|+|++..|||
T Consensus      1068 ~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~--rkv-Lf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG 1144 (1289)
T KOG1214|consen 1068 ISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE--RKV-LFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDG 1144 (1289)
T ss_pred             CCccceeeeeccceeeeeccccchhheeecCCce--eeE-EEeecccCcceEEeecccCceeeccccccCCcceeeccCC
Confidence            9999999999999999999999999999999975  444 4458999999999999999999999999999999999999


Q ss_pred             CCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEE
Q psy5768         436 FGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA  515 (652)
Q Consensus       436 ~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~  515 (652)
                      +|+++|+.+++..||||++|+..+.|.|+|+++++++.+..+|..|+++.+ .++.||+|+-+++.+|||||+.++|..+
T Consensus      1145 ~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~-~LqYPF~itsy~~~fY~TDWk~n~vvsv 1223 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN-NLQYPFSITSYADHFYHTDWKRNGVVSV 1223 (1289)
T ss_pred             ccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhh-cccCceeeeeccccceeeccccCceEEe
Confidence            999999999999999999999999999999999999999999999999988 4699999999999999999999999999


Q ss_pred             EccCCceEEEE-ecccCCcceeEEEeccCCCCCCCCCCCCCCCCccccccCCCCceeeeccCcee
Q psy5768         516 NKYTGEEVYTL-RKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKV  579 (652)
Q Consensus       516 ~k~~g~~~~~~-~~~~~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~  579 (652)
                      ++..++..... ...-...+||.++.+.- +...+||+.+||||.||||+.-.+ ..|.||+.-+
T Consensus      1224 ~~~~~~~td~~~p~~~s~lyGItav~~~C-p~gstpCSedNGGCqHLCLpgqng-avcecpdnvk 1286 (1289)
T KOG1214|consen 1224 NKHSGQFTDEYLPEQRSHLYGITAVYPYC-PTGSTPCSEDNGGCQHLCLPGQNG-AVCECPDNVK 1286 (1289)
T ss_pred             eccccccccccccccccceEEEEeccccC-CCCCCcccccCCcceeecccCcCC-ccccCCccce
Confidence            99887655433 23335689999885432 335699999999999999987765 8999998754

>KOG1215|consensus

Probab=100.00  E-value=2.1e-47  Score=450.02  Aligned_cols=480  Identities=30%  Similarity=0.549  Sum_probs=393.2

Q ss_pred             cEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEeCCCCCcEEEE
Q psy5768          92 HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILA  170 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~-~~~I~~~~ldg~~~~~~~  170 (652)
                      ++..|...+.+||++..  +|+++..+|+.+.+........|.+++..|..|++||++++. .+.|+.+.+++..+..+.
T Consensus       202 ~~~~d~~~~~~~~~~~~--~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  279 (877)
T KOG1215|consen  202 ADDYDESEGRIYWTDDS--RIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLC  279 (877)
T ss_pred             ccccccccCcccccCCc--ceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEe
Confidence            44556777889998754  799999999877777777789999999999999999999974 468999999999999988


Q ss_pred             eecccCceeEEEeccCCEEEE-EeCCCCcEEEEEecCCC-----CceEEE-----eec--------CCCCCcceeeeeee
Q psy5768         171 QEIIMPIKDITLDLKFFSAFY-RNLSKGNIHIISLSNLS-----DVSTIS-----MKP--------YGDSYLKDIKIYSK  231 (652)
Q Consensus       171 ~~~~~~p~gl~lD~~~~~ly~-~d~~g~~~~~i~~~~~~-----~~~~~~-----~~~--------~~~~~~~~i~v~~~  231 (652)
                      ...+.+|+|++.|.-...+|| ..+++++.+ |......     ......     ...        .......+.++++.
T Consensus       280 ~g~~d~pdg~de~~~~~~~~~~~~~d~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  358 (877)
T KOG1215|consen  280 DGDLDCPDGLDEDYCKKKLYWSMNVDGSGRR-ILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPL  358 (877)
T ss_pred             cCccCCCCcccccccccceeeeeecccCCce-eeecccCccccccccccchhhcccccCCCCccccCCcccCCccceecc
Confidence            888889999999999999999 567777766 5553311     110000     000        00011233444544


Q ss_pred             ccCCCCCCCCCCCCCCcccce-ecCCCceEEEeCCc-cccCCCccc---ccceEEEEeeecceeEEecCCCCCCCCCcee
Q psy5768         232 DAQTGTNPCGVNNGGCAELCL-YNGVSAVCACAHGV-VAQDGKSCS---EYDAFIMYSRVNRIDSIHMTDKSDLNSPFES  306 (652)
Q Consensus       232 ~~q~~~n~C~~~ng~Cs~lC~-~~~~~~~C~C~~G~-l~~dg~~C~---~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~  306 (652)
                      ......++|...||+|+|+|+ ..+.++.|.|+.|| +..++  |.   ..++||+++.+..|+++.+ +..+...|   
T Consensus       359 ~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~-~~~~~~~p---  432 (877)
T KOG1215|consen  359 GARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISL-DCSDVSRP---  432 (877)
T ss_pred             cccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceeccc-CCCcceEE---
Confidence            444467999999999999999 45668999999998 44455  54   5889999999999999999 44333222   


Q ss_pred             eeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEc
Q psy5768         307 IRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL  385 (652)
Q Consensus       307 ~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~  385 (652)
                      +   ..+.++.++++|..++++||+|.....|.+...++.....+. .++-.++|||+||+++++||+|.....|.+..+
T Consensus       433 ~---~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~  509 (877)
T KOG1215|consen  433 L---EGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADL  509 (877)
T ss_pred             c---cCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEc
Confidence            2   223678999999999999999999999999999987776644 788899999999999999999999999999998


Q ss_pred             CCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEe
Q psy5768         386 DSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D  465 (652)
                      ++..  +++++. ..+..|++++++|.+|+|||+||+.. ++|+|+.|||..+.+++..++.||+||++|...+++||+|
T Consensus       510 ~g~~--~~vl~~-~~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d  585 (877)
T KOG1215|consen  510 DGSS--RKVLVS-KDLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWAD  585 (877)
T ss_pred             cCCc--eeEEEe-cCCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEc
Confidence            8764  455554 55699999999999999999999974 5999999999999999999999999999999999999999


Q ss_pred             CCCC-eEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEE-eccC
Q psy5768         466 ARLD-KIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAI-SDNL  543 (652)
Q Consensus       466 ~~~~-~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~-~~~~  543 (652)
                      .... .|++++++|..|+.+....+.||++++++++++||+||....+.+.++..+.....+......|..++++ +...
T Consensus       586 ~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (877)
T KOG1215|consen  586 AKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSS  665 (877)
T ss_pred             ccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEecccc
Confidence            9999 7999999999998444445799999999999999999999999999998886622444456788888888 5666


Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++...|+|..+|++|+|+|++.|.+. +|+||.|+.|..+ ++|.+
T Consensus       666 ~~~~~n~C~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~~  710 (877)
T KOG1215|consen  666 RPTGVNPCESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCSS  710 (877)
T ss_pred             CCCCCCcccccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeecC
Confidence            77788999998999999999999976 9999999999888 88986

>KOG1214|consensus

Probab=100.00  E-value=5e-37  Score=325.05  Aligned_cols=249  Identities=29%  Similarity=0.429  Sum_probs=202.3

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEE-----EecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTT-----ILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET   76 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~   76 (652)
                      |++++.  +++|+...++|.....     |+..      .-+-|+|||||-++.+|||+|  +...+|.|+.|+|++.++
T Consensus       992 ~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~------p~~IiVGidfDC~e~mvyWtD--v~g~SI~rasL~G~Ep~t 1061 (1289)
T KOG1214|consen  992 FLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSL------PGSIIVGIDFDCRERMVYWTD--VAGRSISRASLEGAEPET 1061 (1289)
T ss_pred             eEEEec--cceEEEeecCcchhchhhhhceEec------ccceeeeeecccccceEEEee--cCCCccccccccCCCCce
Confidence            677774  7889999988875543     3322      236789999999999999999  888999999999999999


Q ss_pred             EEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC-CCCe
Q psy5768          77 VVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPL  155 (652)
Q Consensus        77 v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~-~~~~  155 (652)
                      ++..+ +.+|+    ||||||+.+|+||+|+..++|+|+.|||+.+++|+.++|-+||+|++|+..|.||||||. .+|+
T Consensus      1062 i~n~~-L~SPE----GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPk 1136 (1289)
T KOG1214|consen 1062 IVNSG-LISPE----GIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPK 1136 (1289)
T ss_pred             eeccc-CCCcc----ceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCc
Confidence            99999 99999    999999999999999999999999999999999999999999999999999999999998 5899


Q ss_pred             EEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeC----------CCCcEEEEEec-----------------CCC
Q psy5768         156 IARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNL----------SKGNIHIISLS-----------------NLS  208 (652)
Q Consensus       156 I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~----------~g~~~~~i~~~-----------------~~~  208 (652)
                      |++..|||+++++|+++.++.||||++|+....|-|+|.          +|..+|+++..                 +++
T Consensus      1137 Iets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1137 IETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWK 1216 (1289)
T ss_pred             ceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceeeeeccccceeeccc
Confidence            999999999999999999999999999999999999774          44445544431                 111


Q ss_pred             CceEEEeec-----------CCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCC
Q psy5768         209 DVSTISMKP-----------YGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHG  265 (652)
Q Consensus       209 ~~~~~~~~~-----------~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G  265 (652)
                      .-.++++..           .....+++|...-+.=-.+.+||.++||||+|||+..-++..|.|+..
T Consensus      1217 ~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpgqngavcecpdn 1284 (1289)
T KOG1214|consen 1217 RNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQNGAVCECPDN 1284 (1289)
T ss_pred             cCceEEeeccccccccccccccccceEEEEeccccCCCCCCcccccCCcceeecccCcCCccccCCcc
Confidence            111222211           111123333322222226789999999999999997666899999874

>KOG1215|consensus

Probab=100.00  E-value=1.2e-34  Score=341.91  Aligned_cols=416  Identities=28%  Similarity=0.493  Sum_probs=329.7

Q ss_pred             CCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccC
Q psy5768           9 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTA   88 (652)
Q Consensus         9 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~   88 (652)
                      ....|+.+.++.......+.       .+..+.++++|+.++++||+|  .....|.++.++|.....+...+ ...++ 
T Consensus       415 ~~~~ir~~~~~~~~~~~p~~-------~~~~~~~~d~d~~~~~i~~~d--~~~~~i~~~~~~~~~~~~~~~~g-~~~~~-  483 (877)
T KOG1215|consen  415 NRHDIRRISLDCSDVSRPLE-------GIKNAVALDFDVLNNRIYWAD--LSDEKICRASQDGSSECELCGDG-LCIPE-  483 (877)
T ss_pred             cCccceecccCCCcceEEcc-------CCccceEEEEEecCCEEEEEe--ccCCeEeeeccCCCccceEeccC-ccccC-
Confidence            35566666666553333332       337899999999999999999  99999999999998777788888 88899 


Q ss_pred             CCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEE
Q psy5768          89 CNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI  168 (652)
Q Consensus        89 ~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~  168 (652)
                         +||+||+.+++||+|.....|++.+++|..+.+++...+..|+.+++||..|+|||+||+..++|+|+.|||+.+..
T Consensus       484 ---~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~  560 (877)
T KOG1215|consen  484 ---GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAV  560 (877)
T ss_pred             ---cEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceE
Confidence               99999999999999999999999999999999999998899999999999999999999977799999999999999


Q ss_pred             EEeecccCceeEEEeccCCEEEE-----------EeCCCCcEEEEEecCCCCceEEE-----------------------
Q psy5768         169 LAQEIIMPIKDITLDLKFFSAFY-----------RNLSKGNIHIISLSNLSDVSTIS-----------------------  214 (652)
Q Consensus       169 ~~~~~~~~p~gl~lD~~~~~ly~-----------~d~~g~~~~~i~~~~~~~~~~~~-----------------------  214 (652)
                      ++..++.||+||++|..++++||           ++++|++++.+......++..++                       
T Consensus       561 l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~  640 (877)
T KOG1215|consen  561 LVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHK  640 (877)
T ss_pred             EEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeeccc
Confidence            99999999999999999999999           35677777622222222222211                       


Q ss_pred             ------eecCCCCCcceeeee-e-eccCCCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccceEEEEee
Q psy5768         215 ------MKPYGDSYLKDIKIY-S-KDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSR  285 (652)
Q Consensus       215 ------~~~~~~~~~~~i~v~-~-~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~~Ll~s~  285 (652)
                            +..... .+..+..+ + ..++...|+|...|++|+|+|+..|.+.+|+|+.|+ |..++++|..+..+++++.
T Consensus       641 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~~~~~~~~~~  719 (877)
T KOG1215|consen  641 GSDSRTSRSNLA-QPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSSPEGYLLITS  719 (877)
T ss_pred             CCcceeeecccC-cccceEEEeccccCCCCCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecCccccccccc
Confidence                  111111 34444444 3 333488999999999999999998886699999996 7789999999999999999


Q ss_pred             ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEE
Q psy5768         286 VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYE  364 (652)
Q Consensus       286 ~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvD  364 (652)
                      ...+..+.+ +.....  ...+..        .   +..++..+|++...+...+...++.....++ +....++++|+|
T Consensus       720 ~~~~~~~~~-~~~~~~--~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (877)
T KOG1215|consen  720 RTGIPCISL-DSELSP--DQPLED--------G---DTIDRLEYWTDVRVGVAAVSSQNCAPGYDLVGEGEPPPEGSAVD  785 (877)
T ss_pred             ccccceeec-CcccCC--CcccCC--------C---cccccceecccccceeeEEEecCCCCccccccccCCCCCCceee
Confidence            999998887 332211  111110        1   7788899999987777666666554333333 777799999999


Q ss_pred             ccCCEEEEEeCCCCeEEEEEcCCCCCc---cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEE
Q psy5768         365 YVHNYLYWTCNNDATINKIDLDSPKAQ---RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESI  441 (652)
Q Consensus       365 w~~~~LYwtd~~~~~I~~~~~~~~~~~---~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l  441 (652)
                      +..+.|||+......|.+..+++....   ....+.......|+++.+.|..++++|++| ...+.|.++.+++.++..+
T Consensus       786 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  864 (877)
T KOG1215|consen  786 EAEDTLYWTCSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLFWTNW-EPGPKIPRSALDGSERLVL  864 (877)
T ss_pred             hhhcceEEEeecccEEEEEEEeeecccccccccccccCCCCCCcceeeccccceeccCCc-cccceeeecccccccccce
Confidence            999999999999998888877663221   122333456788999999999999999999 4457999999999999999


Q ss_pred             EEcCCCCCceEEE
Q psy5768         442 ITTDITMPNALAL  454 (652)
Q Consensus       442 ~~~~l~~P~glai  454 (652)
                      +...+..|+|+++
T Consensus       865 ~~~~~~~~~~~~~  877 (877)
T KOG1215|consen  865 FKSLLSCPNALAL  877 (877)
T ss_pred             eccCCCCccCCCC
Confidence            9888889998863

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.75  E-value=4.9e-16  Score=156.68  Aligned_cols=213  Identities=23%  Similarity=0.322  Sum_probs=159.2

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV  395 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~  395 (652)
                      +.++.||..++.|||+|...++|++++.++...+.+.  ...|.|++++...+.||+++..  .+.++++....  .+.+
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~--~~~~   75 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGK--VTVL   75 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SSSEEEEEEECTTSEEEEEETT--CEEEEETTTTE--EEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cCCCceEEEEccCCEEEEEEcC--ceEEEecCCCc--EEEE
Confidence            4688999999999999999999999999876544433  2239999999777999999964  44455654321  3444


Q ss_pred             EEe---C-CCCCceEEEEeCCCCEEEEEecCCCC------CceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEe
Q psy5768         396 VRL---G-QHDKPRGIDIDSCDSRIYWTNWNSHL------PSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       396 ~~~---~-~~~~P~~Iavdp~~g~Lywtd~~~~~------~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D  465 (652)
                      ...   . ....|.++++|| .|.||+|+.+...      ++|+|...+|. . ..+...+..||||+++++++.||++|
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~-~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-V-TVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-E-EEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-E-EEEecCcccccceEECCcchheeecc
Confidence            443   1 568899999999 5889999976432      46999998843 3 33345688999999999999999999


Q ss_pred             CCCCeEEEEecCC--C---ceEEEecCC--CCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeE
Q psy5768         466 ARLDKIERCDYDG--T---NRIVLSKIS--PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIV  537 (652)
Q Consensus       466 ~~~~~I~~~~ldG--~---~~~~l~~~~--~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~  537 (652)
                      ...++|.+++++.  .   +++++....  ...|-||+++ +++||++++..+.|.++++. |+....+......|..++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            9999999999974  2   345554432  2359999998 57999999999999999996 887777765555666555


Q ss_pred             E
Q psy5768         538 A  538 (652)
Q Consensus       538 ~  538 (652)
                      .
T Consensus       232 f  232 (246)
T PF08450_consen  232 F  232 (246)
T ss_dssp             E
T ss_pred             E
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.75  E-value=3.3e-15  Score=177.43  Aligned_cols=299  Identities=14%  Similarity=0.181  Sum_probs=196.6

Q ss_pred             CCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC------------CcCCccCCCCcEEEEccCCcE
Q psy5768          35 STLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK------------KYPAVTACNLHIAVDWIAQNI  102 (652)
Q Consensus        35 ~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~------------~~~~p~~~~~~lavDw~~~~l  102 (652)
                      +++..|.+|++|+.++.||++|  ..+++|++++++|.....+...+            .+..|.    |||+|..++.|
T Consensus       565 s~l~~P~gvavd~~~g~lyVaD--s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~----GIavd~~gn~L  638 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISD--SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ----GLAYNAKKNLL  638 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEE--CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc----EEEEeCCCCEE
Confidence            4678899999999999999999  89999999999987554444322            133466    99999877789


Q ss_pred             EEEeCCCCEEEEEEcCCCcEEEEEeC----------------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc
Q psy5768         103 YWSDPKENVIEVARLTGQYRYVLISG----------------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ  166 (652)
Q Consensus       103 Y~~d~~~~~I~v~~~dg~~~~~l~~~----------------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~  166 (652)
                      |++|...++|.++++.+...+++...                .+..|.++++||.+|.||++|++ +..|.+.+..+...
T Consensus       639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~g~v  717 (1057)
T PLN02919        639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISDGVT  717 (1057)
T ss_pred             EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCCCeE
Confidence            99999999999999987766666432                15689999999999999999986 55788777644333


Q ss_pred             EEEEe--------------ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeec
Q psy5768         167 TILAQ--------------EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKD  232 (652)
Q Consensus       167 ~~~~~--------------~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~  232 (652)
                      ..+..              ..+..|+||++++.+++||++|...+.++.+-...+. ...                ..  
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~----------------~~--  778 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG-SRL----------------LA--  778 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEE----------------EE--
Confidence            22211              1257899999999999999999875554444221110 000                00  


Q ss_pred             cCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccc
Q psy5768         233 AQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTM  312 (652)
Q Consensus       233 ~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~  312 (652)
                                  |+.       +          .. .+.        ..-+...         ++...         ...
T Consensus       779 ------------gg~-------~----------~~-~~~--------l~~fG~~---------dG~g~---------~~~  802 (1057)
T PLN02919        779 ------------GGD-------P----------TF-SDN--------LFKFGDH---------DGVGS---------EVL  802 (1057)
T ss_pred             ------------ecc-------c----------cc-Ccc--------cccccCC---------CCchh---------hhh
Confidence                        000       0          00 000        0000000         10000         011


Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-e-------------ccCceeeeEEEccCCEEEEEeCCCC
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-E-------------RQGSVEGLAYEYVHNYLYWTCNNDA  378 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~-------------~~~~~~glAvDw~~~~LYwtd~~~~  378 (652)
                      +.++.++++|.. +.||++|..+++|.+++.++.....+. .             .+..|.|||+|..+ +||++|..++
T Consensus       803 l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn  880 (1057)
T PLN02919        803 LQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNS  880 (1057)
T ss_pred             ccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCC
Confidence            234678888865 469999999999999998765544443 2             23479999999865 6999999999


Q ss_pred             eEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEE
Q psy5768         379 TINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT  419 (652)
Q Consensus       379 ~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywt  419 (652)
                      +|.++++..........+.+.....|.  ++.+...+||.+
T Consensus       881 ~Irvid~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~  919 (1057)
T PLN02919        881 LIRYLDLNKGEAAEILTLELKGVQPPR--PKSKSLKRLRRR  919 (1057)
T ss_pred             EEEEEECCCCccceeEeeccccccCCC--Ccccchhhhhhc
Confidence            999999876431111223334555555  333333556655

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.70  E-value=7.2e-15  Score=174.56  Aligned_cols=210  Identities=18%  Similarity=0.206  Sum_probs=158.7

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee-c-------------cCceeeeEEEccCCEEEEEeCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE-R-------------QGSVEGLAYEYVHNYLYWTCNN  376 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~-~-------------~~~~~glAvDw~~~~LYwtd~~  376 (652)
                      ..+..+.++++|..++.||++|..+++|++++++|.....+.. +             +..|.|||+|..++.||++|..
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            3456778899999999999999999999999998864333322 1             3469999999988999999999


Q ss_pred             CCeEEEEEcCCCCCccEEEEEe---------------CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEE
Q psy5768         377 DATINKIDLDSPKAQRIVVVRL---------------GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESI  441 (652)
Q Consensus       377 ~~~I~~~~~~~~~~~~~~~~~~---------------~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l  441 (652)
                      +++|.++++.+..  ..++...               ..+..|.+|+++|..+.||++|.+.+  +|++.+..+....++
T Consensus       645 n~~Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~--~I~v~d~~~g~v~~~  720 (1057)
T PLN02919        645 NHALREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH--QIWEYNISDGVTRVF  720 (1057)
T ss_pred             CceEEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC--eEEEEECCCCeEEEE
Confidence            9999999875421  1222110               12568999999999999999998865  777776644332222


Q ss_pred             EE--------------cCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEec---------------------
Q psy5768         442 IT--------------TDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK---------------------  486 (652)
Q Consensus       442 ~~--------------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~---------------------  486 (652)
                      ..              ..+..|+||++++.+++||++|...++|..+++++.....+..                     
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            11              1356899999999999999999999999999998654433321                     


Q ss_pred             CCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEE
Q psy5768         487 ISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVY  524 (652)
Q Consensus       487 ~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~  524 (652)
                      ..+.+|.||++.. +.||++|+.+++|.+++..++....
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            0145899999984 5899999999999999987665443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.63  E-value=3.6e-13  Score=135.82  Aligned_cols=231  Identities=20%  Similarity=0.152  Sum_probs=161.4

Q ss_pred             eeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCC
Q psy5768          40 ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG  119 (652)
Q Consensus        40 ~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg  119 (652)
                      +.++.||+.++.|||+|  ...++|+|+++++...+.+ ...   .|.    |++++...++||+++..  .+.+.+++.
T Consensus         2 ~Egp~~d~~~g~l~~~D--~~~~~i~~~~~~~~~~~~~-~~~---~~~----G~~~~~~~g~l~v~~~~--~~~~~d~~~   69 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVD--IPGGRIYRVDPDTGEVEVI-DLP---GPN----GMAFDRPDGRLYVADSG--GIAVVDPDT   69 (246)
T ss_dssp             EEEEEEETTTTEEEEEE--TTTTEEEEEETTTTEEEEE-ESS---SEE----EEEEECTTSEEEEEETT--CEEEEETTT
T ss_pred             CcceEEECCCCEEEEEE--cCCCEEEEEECCCCeEEEE-ecC---CCc----eEEEEccCCEEEEEEcC--ceEEEecCC
Confidence            46889999999999999  8899999999998754443 332   377    99999767999999953  344448776


Q ss_pred             CcEEEEEeC-----CCCCceeEEEcCCCCeEEEEecCCC-------CeEEEEeCCCCCcEEEEeecccCceeEEEeccCC
Q psy5768         120 QYRYVLISG-----GVDQPSALAVDPESGYLFWSESGKI-------PLIARAGLDGKKQTILAQEIIMPIKDITLDLKFF  187 (652)
Q Consensus       120 ~~~~~l~~~-----~~~~P~~iavd~~~g~lywtd~~~~-------~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~  187 (652)
                      ...+.+...     .+..|.++++|| +|.||+|+.+..       +.|.|...+|+  ...+...+..||||++++.++
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTSS
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe--EEEEecCcccccceEECCcch
Confidence            555666653     467899999999 688999997531       56999988844  333455689999999999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCcc
Q psy5768         188 SAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVV  267 (652)
Q Consensus       188 ~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l  267 (652)
                      .||+++...+.+..+-.           ...                                                 
T Consensus       147 ~lyv~ds~~~~i~~~~~-----------~~~-------------------------------------------------  166 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDL-----------DAD-------------------------------------------------  166 (246)
T ss_dssp             EEEEEETTTTEEEEEEE-----------ETT-------------------------------------------------
T ss_pred             heeecccccceeEEEec-----------ccc-------------------------------------------------
Confidence            99999987544322211           000                                                 


Q ss_pred             ccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCc
Q psy5768         268 AQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN  347 (652)
Q Consensus       268 ~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~  347 (652)
                         +.         .++....+  +++ ..              ....+-++++|. .+.||+++...++|.+++.+|..
T Consensus       167 ---~~---------~~~~~~~~--~~~-~~--------------~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~  216 (246)
T PF08450_consen  167 ---GG---------ELSNRRVF--IDF-PG--------------GPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKL  216 (246)
T ss_dssp             ---TC---------CEEEEEEE--EE--SS--------------SSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCE
T ss_pred             ---cc---------ceeeeeeE--EEc-CC--------------CCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccE
Confidence               00         00001000  122 00              012367888998 56799999999999999999876


Q ss_pred             ceEEeeccCceeeeEEE-ccCCEEEEEeC
Q psy5768         348 HRVLLERQGSVEGLAYE-YVHNYLYWTCN  375 (652)
Q Consensus       348 ~~~i~~~~~~~~glAvD-w~~~~LYwtd~  375 (652)
                      ...+......|..+|+- ...+.||+|.+
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            66666556699999993 56788999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=1.1e-10  Score=123.54  Aligned_cols=303  Identities=15%  Similarity=0.169  Sum_probs=193.2

Q ss_pred             CEEEEEEcCC---CcEEEEEeCCCCCceeEEEcCCCCeEEEEecC--CCCeEEEEeCCCC-CcEEEEeec---ccCceeE
Q psy5768         110 NVIEVARLTG---QYRYVLISGGVDQPSALAVDPESGYLFWSESG--KIPLIARAGLDGK-KQTILAQEI---IMPIKDI  180 (652)
Q Consensus       110 ~~I~v~~~dg---~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~--~~~~I~~~~ldg~-~~~~~~~~~---~~~p~gl  180 (652)
                      +-|.++++|.   +...+-.......|..|++||.+.+||.++..  ..+.|....++.. ....++...   -..|..|
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            5666666632   21111111246899999999999999999986  4678888887765 344333332   4678999


Q ss_pred             EEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceE
Q psy5768         181 TLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVC  260 (652)
Q Consensus       181 ~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C  260 (652)
                      ++|+.++.||+++|.++....+-.+.           . + .+...                                  
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~-----------~-g-~l~~~----------------------------------  125 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDD-----------D-G-SLGEV----------------------------------  125 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECT-----------T-S-EEEEE----------------------------------
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccC-----------C-c-cccee----------------------------------
Confidence            99999999999999877754432211           0 0 00000                                  


Q ss_pred             EEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEE
Q psy5768         261 ACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINS  340 (652)
Q Consensus       261 ~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~  340 (652)
                                        ..++.-.+.     .. +...           .....+..+.+++..+.||.+|....+|+.
T Consensus       126 ------------------~~~~~~~g~-----g~-~~~r-----------q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen  126 ------------------VQTVRHEGS-----GP-NPDR-----------QEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             ------------------EEEEESEEE-----ES-STTT-----------TSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             ------------------eeecccCCC-----CC-cccc-----------cccccceeEEECCCCCEEEEEecCCCEEEE
Confidence                              000000000     00 1101           111346788999999999999999999999


Q ss_pred             EeccCCc--ce---EE-eeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC-------CCCCceEE
Q psy5768         341 VFFNGSN--HR---VL-LERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG-------QHDKPRGI  407 (652)
Q Consensus       341 ~~~~g~~--~~---~i-~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~-------~~~~P~~I  407 (652)
                      +.++...  .+   .+ +..-..|..|++++.++.+|+++...++|.+++++...+..+.+-...       ....|.+|
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            9987543  21   11 134458999999999999999999999999999884343322222111       11378999


Q ss_pred             EEeCCCCEEEEEecCCCCCceEEEeecCCC-ceEE---EEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCc--e
Q psy5768         408 DIDSCDSRIYWTNWNSHLPSIQRAFFSGFG-TESI---ITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN--R  481 (652)
Q Consensus       408 avdp~~g~Lywtd~~~~~~~I~r~~ldG~~-~~~l---~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~--~  481 (652)
                      +++|...+||+++.+.+  .|-...+|... ...+   +...-.+|.+|++|+.+++||.+....+.|..+++|...  .
T Consensus       251 ~ispdg~~lyvsnr~~~--sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSN--SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EE-TTSSEEEEEECTTT--EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEecCCCEEEEEeccCC--EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            99999999999999865  67777775432 2222   233456799999999999999999999999988876432  2


Q ss_pred             EEEec-CCCCceeEEE
Q psy5768         482 IVLSK-ISPLHPFDMA  496 (652)
Q Consensus       482 ~~l~~-~~~~~p~gla  496 (652)
                      +.+.. ..+..|..|.
T Consensus       329 ~~~~~~~~~~~p~ci~  344 (345)
T PF10282_consen  329 TPVGSSVPIPSPVCIV  344 (345)
T ss_dssp             EEEEEEEESSSEEEEE
T ss_pred             EEecccccCCCCEEEe
Confidence            32221 1246666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.53  E-value=6.8e-11  Score=124.70  Aligned_cols=300  Identities=16%  Similarity=0.186  Sum_probs=188.9

Q ss_pred             CcEEEEeCCCCEEEEEEcC--CCcE--EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec--
Q psy5768         100 QNIYWSDPKENVIEVARLT--GQYR--YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--  173 (652)
Q Consensus       100 ~~lY~~d~~~~~I~v~~~d--g~~~--~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~--  173 (652)
                      ..+|++....+.|.+.+++  |+..  ..+ . ....|..|+++|...+||.+.+. ...|....+++.....++...  
T Consensus         2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~-~~~~~~~l~~spd~~~lyv~~~~-~~~i~~~~~~~~g~l~~~~~~~~   78 (330)
T PRK11028          2 QIVYIASPESQQIHVWNLNHEGALTLLQVV-D-VPGQVQPMVISPDKRHLYVGVRP-EFRVLSYRIADDGALTFAAESPL   78 (330)
T ss_pred             eEEEEEcCCCCCEEEEEECCCCceeeeeEE-e-cCCCCccEEECCCCCEEEEEECC-CCcEEEEEECCCCceEEeeeecC
Confidence            4689999888999999885  4322  222 1 23679999999988899999874 456766666643333333221  


Q ss_pred             ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCccccee
Q psy5768         174 IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLY  253 (652)
Q Consensus       174 ~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~  253 (652)
                      ...|.+|++++.+++||...+..+....+                           +...                    
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~---------------------------~~~~--------------------  111 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVS---------------------------PLDK--------------------  111 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEE---------------------------EECC--------------------
Confidence            34789999999999999987753332221                           1000                    


Q ss_pred             cCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeec
Q psy5768         254 NGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDI  333 (652)
Q Consensus       254 ~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~  333 (652)
                                      ++..            ..   .+..            +   .....+.++++++..+.+|.++.
T Consensus       112 ----------------~g~~------------~~---~~~~------------~---~~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028        112 ----------------DGIP------------VA---PIQI------------I---EGLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             ----------------CCCC------------CC---ceee------------c---cCCCcccEeEeCCCCCEEEEeeC
Confidence                            0000            00   0000            0   00012345667888888999998


Q ss_pred             ccccEEEEeccCCcc------eEE-eeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC-------
Q psy5768         334 QKGTINSVFFNGSNH------RVL-LERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG-------  399 (652)
Q Consensus       334 ~~~~I~~~~~~g~~~------~~i-~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~-------  399 (652)
                      ..++|..++++....      ..+ ...-..|.++++++.++.||.++...++|.+.+++...+..+.+....       
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            888888888764211      111 122347999999999999999999899999999864222122222211       


Q ss_pred             CCCCceEEEEeCCCCEEEEEecCCCCCceEEEee--cCCCceEEEEc-CCCCCceEEEecCCCEEEEEeCCCCeEEEEec
Q psy5768         400 QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF--SGFGTESIITT-DITMPNALALDHQAEKLFWGDARLDKIERCDY  476 (652)
Q Consensus       400 ~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l--dG~~~~~l~~~-~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l  476 (652)
                      ....|.+|+++|..++||.++.+.+  .|....+  ++...+.+-.. ....|.++++++.+++||.+....+.|..+.+
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~--~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTAS--LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCC--eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            1124557999999999999987654  5555554  44322222211 13479999999999999999988888888877


Q ss_pred             CCC--ceEEEecC-CCCceeEEEE
Q psy5768         477 DGT--NRIVLSKI-SPLHPFDMAV  497 (652)
Q Consensus       477 dG~--~~~~l~~~-~~~~p~glav  497 (652)
                      +..  ..+.+... ....|.++++
T Consensus       304 ~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        304 DGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             cCCCCcEEEccccccCCCceEEEE
Confidence            643  22222111 1467888776

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=8e-10  Score=116.53  Aligned_cols=307  Identities=13%  Similarity=0.150  Sum_probs=192.7

Q ss_pred             eEEEecCCCCeEEEEecC--CCe--eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEE
Q psy5768           2 FIAVSSPTQSKIVVCNLE--GEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV   77 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v   77 (652)
                      |++|+....+.|.+++++  |+.  ..++.        ....+..|+++|..++||++.  ...+.|..+..+......+
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--------~~~~~~~l~~spd~~~lyv~~--~~~~~i~~~~~~~~g~l~~   72 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVD--------VPGQVQPMVISPDKRHLYVGV--RPEFRVLSYRIADDGALTF   72 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEe--------cCCCCccEEECCCCCEEEEEE--CCCCcEEEEEECCCCceEE
Confidence            689999889999999985  331  12221        224678899999999999998  6678887777653322222


Q ss_pred             EeCC-CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC--CCcEEEEEe-CCCCCceeEEEcCCCCeEEEEecCCC
Q psy5768          78 VSQK-KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKI  153 (652)
Q Consensus        78 ~~~~-~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d--g~~~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~  153 (652)
                      +... ....|.    +|+++..++.||.+....+.|.+++++  |.....+.. .....|..++++|...++|.++.+ .
T Consensus        73 ~~~~~~~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-~  147 (330)
T PRK11028         73 AAESPLPGSPT----HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-E  147 (330)
T ss_pred             eeeecCCCCce----EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-C
Confidence            2221 023566    999999888999998888999998875  432221111 234679999999988899999986 4


Q ss_pred             CeEEEEeCCCCCcEE-----EEe-ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceee
Q psy5768         154 PLIARAGLDGKKQTI-----LAQ-EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIK  227 (652)
Q Consensus       154 ~~I~~~~ldg~~~~~-----~~~-~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  227 (652)
                      ..|...+++......     .+. ..-..|.++++++.+++||+++...+....+...           ...        
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~-----------~~~--------  208 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK-----------DPH--------  208 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe-----------CCC--------
Confidence            578888776422110     011 1124689999999999999987653433222110           000        


Q ss_pred             eeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceee
Q psy5768         228 IYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESI  307 (652)
Q Consensus       228 v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~  307 (652)
                                                                 +       .+      ..+..+.. -+....      
T Consensus       209 -------------------------------------------~-------~~------~~~~~~~~-~p~~~~------  225 (330)
T PRK11028        209 -------------------------------------------G-------EI------ECVQTLDM-MPADFS------  225 (330)
T ss_pred             -------------------------------------------C-------CE------EEEEEEec-CCCcCC------
Confidence                                                       0       00      00000110 000100      


Q ss_pred             eeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCc-ceEEe---eccCceeeeEEEccCCEEEEEeCCCCeEEEE
Q psy5768         308 RNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLL---ERQGSVEGLAYEYVHNYLYWTCNNDATINKI  383 (652)
Q Consensus       308 ~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~-~~~i~---~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~  383 (652)
                          ..+.+.++.+++..++||.++...+.|..++++... ..+++   .....|.++++++.++.||.++...++|.++
T Consensus       226 ----~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        226 ----DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             ----CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence                002234677888888899998877888877764322 11222   2224789999999999999999888999998


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEE
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDI  409 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iav  409 (652)
                      +++...+....+-.......|.+|++
T Consensus       302 ~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        302 EIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             EEcCCCCcEEEccccccCCCceEEEE
Confidence            87654332222222334678888887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=4.5e-09  Score=111.40  Aligned_cols=308  Identities=16%  Similarity=0.154  Sum_probs=194.2

Q ss_pred             EEEecCCC---CeEEEEec--CCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccC-CcceEEEEEcCCC--cc
Q psy5768           3 IAVSSPTQ---SKIVVCNL--EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK-QVVTIEMAFMDGT--KR   74 (652)
Q Consensus         3 i~v~~~~~---~~I~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~-~~~~I~~~~~dgs--~~   74 (652)
                      ++|.+++.   +.|+++.+  +...+..+...     ....+|.-|++++.+++||.++... ..+.|..+..+..  ..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence            68888886   89988877  43334333221     1457899999999999999999221 4567766555432  22


Q ss_pred             EEE---EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC--CCcEEE--EEe----------CCCCCceeEE
Q psy5768          75 ETV---VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYV--LIS----------GGVDQPSALA  137 (652)
Q Consensus        75 ~~v---~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d--g~~~~~--l~~----------~~~~~P~~ia  137 (652)
                      +.+   ...+  ..|-    .|++|...+.||+++...+.|.+++++  |+....  ++.          ..-.+|+.+.
T Consensus        77 ~~~~~~~~~g--~~p~----~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   77 TLLNSVPSGG--SSPC----HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             EEEEEEEESS--SCEE----EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             EEeeeeccCC--CCcE----EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence            222   2222  4566    999999999999999999999998876  443333  221          1246899999


Q ss_pred             EcCCCCeEEEEecCCCCeEEEEeCCCCC--cEE---EEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceE
Q psy5768         138 VDPESGYLFWSESGKIPLIARAGLDGKK--QTI---LAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVST  212 (652)
Q Consensus       138 vd~~~g~lywtd~~~~~~I~~~~ldg~~--~~~---~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~  212 (652)
                      ++|.+.+||.+|.|. .+|....++...  ...   +....-..|+.+++++.++++|++.-..+....+..        
T Consensus       151 ~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~--------  221 (345)
T PF10282_consen  151 FSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY--------  221 (345)
T ss_dssp             E-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE--------
T ss_pred             ECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee--------
Confidence            999999999999984 589999887655  211   111124569999999999999998765443322211        


Q ss_pred             EEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEE
Q psy5768         213 ISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSI  292 (652)
Q Consensus       213 ~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i  292 (652)
                         ...                                                   ++       .      -..+..+
T Consensus       222 ---~~~---------------------------------------------------~g-------~------~~~~~~~  234 (345)
T PF10282_consen  222 ---DPS---------------------------------------------------DG-------S------LTEIQTI  234 (345)
T ss_dssp             ---ETT---------------------------------------------------TT-------E------EEEEEEE
T ss_pred             ---ccc---------------------------------------------------CC-------c------eeEEEEe
Confidence               000                                                   00       0      0011122


Q ss_pred             ecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCC--cceEEe---eccCceeeeEEEccC
Q psy5768         293 HMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGS--NHRVLL---ERQGSVEGLAYEYVH  367 (652)
Q Consensus       293 ~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~--~~~~i~---~~~~~~~glAvDw~~  367 (652)
                      .. .+....          ....+.+|.+++..+.||+++...+.|..+.++..  ..+.+-   .+-..|.+|++|..+
T Consensus       235 ~~-~~~~~~----------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  235 ST-LPEGFT----------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             ES-CETTSC----------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             ee-cccccc----------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence            21 111110          01246778889999999999999999988888542  222221   334569999999999


Q ss_pred             CEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEE
Q psy5768         368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGID  408 (652)
Q Consensus       368 ~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Ia  408 (652)
                      +.||.++...+.|.+++++...+....+........|..|+
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~  344 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV  344 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence            99999999999999998875544322222222445666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.1e-10  Score=119.84  Aligned_cols=204  Identities=24%  Similarity=0.288  Sum_probs=143.2

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV  395 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~  395 (652)
                      ..+..||...+.|||+|...++|.+.+......++....-..+.++.+| ..++|.-++.+..   ..+.+.  +...++
T Consensus        27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~---~~~~~~--~~~~t~  100 (307)
T COG3386          27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEHGVR---LLDPDT--GGKITL  100 (307)
T ss_pred             ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEccccE---EEeccC--CceeEE
Confidence            4567789999999999999999999998744444444333346777777 4667766654432   233221  112133


Q ss_pred             EEe----CCCCCceEEEEeCCCCEEEEEecC---------CCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEE
Q psy5768         396 VRL----GQHDKPRGIDIDSCDSRIYWTNWN---------SHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLF  462 (652)
Q Consensus       396 ~~~----~~~~~P~~Iavdp~~g~Lywtd~~---------~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LY  462 (652)
                      +..    ....+|....++| .|.+|+++.+         ...+.++|...+|.. +.++...+..||||+++++++.||
T Consensus       101 ~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             eccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCE-EEeecCcEEecCceEECCCCCEEE
Confidence            322    2447899999999 5999999988         234579999886544 444555588999999999999999


Q ss_pred             EEeCCCCeEEEEecC---C--Cce--EEEecCCCCceeEEEEeCC-EEE-EEcCCCCeEEEEEccCCceEEEEec
Q psy5768         463 WGDARLDKIERCDYD---G--TNR--IVLSKISPLHPFDMAVYGE-FIF-WTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       463 w~D~~~~~I~~~~ld---G--~~~--~~l~~~~~~~p~glav~~~-~lY-wtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      ++|....+|.+++++   |  .++  .+........|-|++++.+ .|| ++-|....|.+.++. |+....+..
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            999999999999998   3  122  2222223478999999955 555 455666689999986 776665553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.22  E-value=1.8e-07  Score=96.19  Aligned_cols=298  Identities=13%  Similarity=0.064  Sum_probs=170.3

Q ss_pred             eEEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      +++|+...++.|.+++++ ++....+...        ..+.++++++.++.+|.+.  ...+.|+.++..+......+..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~--------~~~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~   71 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG--------QRPRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEVIGTLPS   71 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC--------CCCCceEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEeccC
Confidence            578888888999999986 4444444321        2467899999888899887  6678899888775432222222


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                      +  ..+.    .++++..++.+|.+....+.|.+.++........+.. ...|.+++++|...+++.+... ...+...+
T Consensus        72 ~--~~~~----~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~-~~~~~~~d  143 (300)
T TIGR03866        72 G--PDPE----LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET-TNMAHFID  143 (300)
T ss_pred             C--CCcc----EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC-CCeEEEEe
Confidence            2  3356    8888887778888877678999999876433222222 2468999999955555544332 22333333


Q ss_pred             CCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCC
Q psy5768         161 LDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPC  240 (652)
Q Consensus       161 ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C  240 (652)
                      +........... -..|..+++++.+++||.....++..+                           +|+..        
T Consensus       144 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~---------------------------i~d~~--------  187 (300)
T TIGR03866       144 TKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVS---------------------------VIDVA--------  187 (300)
T ss_pred             CCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEE---------------------------EEEcC--------
Confidence            332211111111 124556666655555544322111111                           11100        


Q ss_pred             CCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEE
Q psy5768         241 GVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELS  320 (652)
Q Consensus       241 ~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~  320 (652)
                                                                  +...+.++.. ......         .....+.++.
T Consensus       188 --------------------------------------------~~~~~~~~~~-~~~~~~---------~~~~~~~~i~  213 (300)
T TIGR03866       188 --------------------------------------------TRKVIKKITF-EIPGVH---------PEAVQPVGIK  213 (300)
T ss_pred             --------------------------------------------cceeeeeeee-cccccc---------cccCCccceE
Confidence                                                        0000111111 000000         0001234566


Q ss_pred             EEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCC
Q psy5768         321 YDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQ  400 (652)
Q Consensus       321 ~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~  400 (652)
                      |++..+.+|++....++|..+++........+..-..+.+|++.+.++.||.+....+.|.+.++.+.    +.+-.+..
T Consensus       214 ~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~----~~~~~~~~  289 (300)
T TIGR03866       214 LTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL----KVIKSIKV  289 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEc
Confidence            77766777776655566777766533222222222368899999999999988877889999998763    22222334


Q ss_pred             CCCceEEEEeC
Q psy5768         401 HDKPRGIDIDS  411 (652)
Q Consensus       401 ~~~P~~Iavdp  411 (652)
                      ...|.+||+.|
T Consensus       290 ~~~~~~~~~~~  300 (300)
T TIGR03866       290 GRLPWGVVVRP  300 (300)
T ss_pred             ccccceeEeCC
Confidence            68999999875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.9e-07  Score=94.05  Aligned_cols=297  Identities=14%  Similarity=0.164  Sum_probs=196.1

Q ss_pred             CcEEEEeCC---CCEEEEEEcCCCc---EEEEEeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEeCCCC-CcEEEEe
Q psy5768         100 QNIYWSDPK---ENVIEVARLTGQY---RYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGK-KQTILAQ  171 (652)
Q Consensus       100 ~~lY~~d~~---~~~I~v~~~dg~~---~~~l~~~~~~~P~~iavd~~~g~lywtd~~-~~~~I~~~~ldg~-~~~~~~~  171 (652)
                      .++|+.-..   .+-|.+++++.+.   .....-..+.+|..|+++|....||....- ..+.|.....|+. .+..+++
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln   82 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN   82 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence            356765544   6779998888432   212222257899999999988899988643 3567888888865 6666665


Q ss_pred             ec---ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCc
Q psy5768         172 EI---IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCA  248 (652)
Q Consensus       172 ~~---~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs  248 (652)
                      ..   -..|.-+++|..++.||.++|.++...+.-.           ..+                          |   
T Consensus        83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~-----------~~d--------------------------G---  122 (346)
T COG2706          83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL-----------QAD--------------------------G---  122 (346)
T ss_pred             ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc-----------ccC--------------------------C---
Confidence            54   3456999999999999999998765433211           000                          0   


Q ss_pred             ccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeE
Q psy5768         249 ELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTL  328 (652)
Q Consensus       249 ~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~l  328 (652)
                                       -+.                  ..+-.+.- ++..   |.+.    .....+....+++..+.|
T Consensus       123 -----------------~l~------------------~~v~~~~h-~g~~---p~~r----Q~~~h~H~a~~tP~~~~l  159 (346)
T COG2706         123 -----------------SLQ------------------PVVQVVKH-TGSG---PHER----QESPHVHSANFTPDGRYL  159 (346)
T ss_pred             -----------------ccc------------------cceeeeec-CCCC---CCcc----ccCCccceeeeCCCCCEE
Confidence                             000                  00000000 0000   0000    000224556778888899


Q ss_pred             EEeecccccEEEEeccCCcc----eEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc---EEEEEe---
Q psy5768         329 FYSDIQKGTINSVFFNGSNH----RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR---IVVVRL---  398 (652)
Q Consensus       329 ywsd~~~~~I~~~~~~g~~~----~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~---~~~~~~---  398 (652)
                      +..|....+|+..+++.+..    +..+..-.+|.-|++-+-++..|....-+++|.+...+...+..   +++..+   
T Consensus       160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d  239 (346)
T COG2706         160 VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED  239 (346)
T ss_pred             EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence            99999999988887763211    12224445899999999999999999999999999988754432   222222   


Q ss_pred             -CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE--EcCCCCCceEEEecCCCEEEEEeCCCCeEEEEe
Q psy5768         399 -GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII--TTDITMPNALALDHQAEKLFWGDARLDKIERCD  475 (652)
Q Consensus       399 -~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~--~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~  475 (652)
                       .....-.+|.|.|..++||.++.+.+.-.+++..-+|..-+.+-  .+...+|..+.|++.++.|+.+....+.|..+.
T Consensus       240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence             22345567999999999999999977555566666655432222  234557999999999999999998888887777


Q ss_pred             cCCC
Q psy5768         476 YDGT  479 (652)
Q Consensus       476 ldG~  479 (652)
                      .|..
T Consensus       320 ~d~~  323 (346)
T COG2706         320 RDKE  323 (346)
T ss_pred             EcCC
Confidence            7653

>KOG4659|consensus

Probab=99.16  E-value=3.5e-09  Score=119.45  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=107.0

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      .|=.|+++|+-+ +|.||+-|    .+-|.|+..||+-. +|++-+ +..|. +---||+|++.+-||++|....+|.+.
T Consensus       363 ~L~aPvala~a~-DGSl~VGD----fNyIRRI~~dg~v~-tIl~L~-~t~~s-h~Yy~AvsPvdgtlyvSdp~s~qv~rv  434 (1899)
T KOG4659|consen  363 SLFAPVALAYAP-DGSLIVGD----FNYIRRISQDGQVS-TILTLG-LTDTS-HSYYIAVSPVDGTLYVSDPLSKQVWRV  434 (1899)
T ss_pred             eeeceeeEEEcC-CCcEEEcc----chheeeecCCCceE-EEEEec-CCCcc-ceeEEEecCcCceEEecCCCcceEEEe
Confidence            345789999986 69999988    67999999999864 444444 33333 223799999999999999999888776


Q ss_pred             E-cCCC----cEEEEEeC--------------------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEE--
Q psy5768         116 R-LTGQ----YRYVLISG--------------------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI--  168 (652)
Q Consensus       116 ~-~dg~----~~~~l~~~--------------------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~--  168 (652)
                      . +.++    +-+++..+                    .|..|++||+|. .|.||++|..   .|...+-+|--.+.  
T Consensus       435 ~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t---~IR~iD~~giIstlig  510 (1899)
T KOG4659|consen  435 SSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGT---RIRVIDTTGIISTLIG  510 (1899)
T ss_pred             ccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEeccc---EEEEeccCceEEEecc
Confidence            3 3321    22333321                    467899999996 8999999964   56655544322221  


Q ss_pred             ----------------EEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         169 ----------------LAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       169 ----------------~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                                      ++.-.+.||..||+|+-++.||+.|-+
T Consensus       511 ~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n  553 (1899)
T KOG4659|consen  511 TTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN  553 (1899)
T ss_pred             CCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc
Confidence                            222237899999999999999998765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=2.5e-07  Score=99.19  Aligned_cols=295  Identities=16%  Similarity=0.117  Sum_probs=190.5

Q ss_pred             EEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCc
Q psy5768          13 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLH   92 (652)
Q Consensus        13 I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~   92 (652)
                      +.+++..+..+...++.       .+.|.++++++....+|+++  .....+.....--...+.....+ ...|.    +
T Consensus        13 ~~v~~~~~~~~~~~~~~-------~~~~~~v~~~~~g~~~~v~~--~~~~~~~~~~~~~n~~~~~~~~g-~~~p~----~   78 (381)
T COG3391          13 VSVINTGTNKVTAAISL-------GRGPGGVAVNPDGTQVYVAN--SGSNDVSVIDATSNTVTQSLSVG-GVYPA----G   78 (381)
T ss_pred             eEEEeecccEEEEEeec-------CCCCceeEEcCccCEEEEEe--ecCceeeecccccceeeeeccCC-Ccccc----c
Confidence            66666666555555442       24899999999988999999  55555555544411122223333 45567    9


Q ss_pred             EEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEeCCCCCcEEEEe
Q psy5768          93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQ  171 (652)
Q Consensus        93 lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~-~~~I~~~~ldg~~~~~~~~  171 (652)
                      ++++..+.++|.+....+.|.+++.........+.-+ ..|.+++++|..+++|.++.+. ...|...+-........+.
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            9999999999999999999999996655444333333 3999999999999999999863 5667776554433332222


Q ss_pred             ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccc
Q psy5768         172 EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELC  251 (652)
Q Consensus       172 ~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC  251 (652)
                      . -..|.++++|+.++++|..+.+.+....+             ...                                 
T Consensus       158 v-G~~P~~~a~~p~g~~vyv~~~~~~~v~vi-------------~~~---------------------------------  190 (381)
T COG3391         158 V-GNTPTGVAVDPDGNKVYVTNSDDNTVSVI-------------DTS---------------------------------  190 (381)
T ss_pred             c-CCCcceEEECCCCCeEEEEecCCCeEEEE-------------eCC---------------------------------
Confidence            2 23689999999999999998543222111             000                                 


Q ss_pred             eecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEe
Q psy5768         252 LYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYS  331 (652)
Q Consensus       252 ~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lyws  331 (652)
                                                        ...+.+ .- ....       +   .....+..+++++...++|.+
T Consensus       191 ----------------------------------~~~v~~-~~-~~~~-------~---~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         191 ----------------------------------GNSVVR-GS-VGSL-------V---GVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             ----------------------------------Ccceec-cc-cccc-------c---ccCCCCceEEECCCCCEEEEE
Confidence                                              000110 00 0000       0   001234567778888889999


Q ss_pred             eccc--ccEEEEeccCCcceEE-e--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCC---
Q psy5768         332 DIQK--GTINSVFFNGSNHRVL-L--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDK---  403 (652)
Q Consensus       332 d~~~--~~I~~~~~~g~~~~~i-~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~---  403 (652)
                      +..+  +.+.+++......... .  ... .|.+++++|.+..+|.++...+.+.+++....    ..+........   
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~----~v~~~~~~~~~~~~  299 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD----RVVKTGPTGNEALG  299 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC----ceeeeecccccccc
Confidence            8876  6888888665443332 1  444 79999999999999999998899999986542    23333233333   


Q ss_pred             -ceEEEEeCCCCEEEEEe
Q psy5768         404 -PRGIDIDSCDSRIYWTN  420 (652)
Q Consensus       404 -P~~Iavdp~~g~Lywtd  420 (652)
                       |..+++.+.....|.+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~  317 (381)
T COG3391         300 EPVSIAISPLYDTNYVSV  317 (381)
T ss_pred             cceeccceeeccccccee
Confidence             77888877555555443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.06  E-value=2.7e-06  Score=87.51  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=93.4

Q ss_pred             ceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC------CCCCceEEEEeCCCCEEEEEecCCCCCceEE
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG------QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR  430 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~------~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r  430 (652)
                      .|..+++++.++.||.+....+.|.+.++....  ....+...      ....|.+|+++|...++|++..+..  +|..
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~--~i~v  233 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN--RVAV  233 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC--eEEE
Confidence            577899999999998876667888888876422  11111111      1235788999998888998865543  5666


Q ss_pred             EeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEE
Q psy5768         431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAV  497 (652)
Q Consensus       431 ~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav  497 (652)
                      .++........+.. -..|.++++.+.+++||.+....+.|..+|+++.....-+..+ ..|++|++
T Consensus       234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~  298 (300)
T TIGR03866       234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVV  298 (300)
T ss_pred             EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEe
Confidence            66653332222221 2468899999999999998777789999999987754444444 88999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.05  E-value=1.2e-07  Score=101.33  Aligned_cols=250  Identities=14%  Similarity=0.176  Sum_probs=146.4

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeC-----------CC-CEEEEEEc---CCCc-EEEEEeCCCCCceeEEEcCCCCeEE
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDP-----------KE-NVIEVARL---TGQY-RYVLISGGVDQPSALAVDPESGYLF  146 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~-----------~~-~~I~v~~~---dg~~-~~~l~~~~~~~P~~iavd~~~g~ly  146 (652)
                      +..|.    +||+|. .++||+++.           .. ++|.+...   ||.. ...++..++..|++|++.+ +| ||
T Consensus        13 ~~~P~----~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-ly   85 (367)
T TIGR02604        13 LRNPI----AVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VY   85 (367)
T ss_pred             cCCCc----eeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EE
Confidence            77788    999996 688999974           22 38887754   5654 3345566789999999987 66 99


Q ss_pred             EEecCCCCeEEEE-eCCCC-----CcEEEEeec-------ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEE
Q psy5768         147 WSESGKIPLIARA-GLDGK-----KQTILAQEI-------IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTI  213 (652)
Q Consensus       147 wtd~~~~~~I~~~-~ldg~-----~~~~~~~~~-------~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~  213 (652)
                      +++.   +.|.+. ..+|.     .+++++..-       .+.+++|++++ +++||+..-+.++....           
T Consensus        86 V~~~---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~-----------  150 (367)
T TIGR02604        86 VATP---PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT-----------  150 (367)
T ss_pred             EeCC---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec-----------
Confidence            9963   478777 34442     333444321       24488999987 46899876542221100           


Q ss_pred             EeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEe
Q psy5768         214 SMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIH  293 (652)
Q Consensus       214 ~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~  293 (652)
                        .+...                  ..                             +           .......|.+++
T Consensus       151 --~~~~~------------------~~-----------------------------~-----------~~~~~g~i~r~~  170 (367)
T TIGR02604       151 --RPGTS------------------DE-----------------------------S-----------RQGLGGGLFRYN  170 (367)
T ss_pred             --cCCCc------------------cC-----------------------------c-----------ccccCceEEEEe
Confidence              00000                  00                             0           001122445555


Q ss_pred             cCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEecc--C----------C---------cceE--
Q psy5768         294 MTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFN--G----------S---------NHRV--  350 (652)
Q Consensus       294 l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~--g----------~---------~~~~--  350 (652)
                      . ++...    +.+  ..+++++.+++||+ .+.+|.+|.......+++.-  |          .         ..+.  
T Consensus       171 p-dg~~~----e~~--a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~  242 (367)
T TIGR02604       171 P-DGGKL----RVV--AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPT  242 (367)
T ss_pred             c-CCCeE----EEE--ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccc
Confidence            4 33221    222  24567778888886 56778877644433333210  0          0         0000  


Q ss_pred             -------------E-e-eccCceeeeEEE-------ccCCEEEEEeCCCCeEEEEEcCCCCCc--c--EEEEEe-CCCCC
Q psy5768         351 -------------L-L-ERQGSVEGLAYE-------YVHNYLYWTCNNDATINKIDLDSPKAQ--R--IVVVRL-GQHDK  403 (652)
Q Consensus       351 -------------i-~-~~~~~~~glAvD-------w~~~~LYwtd~~~~~I~~~~~~~~~~~--~--~~~~~~-~~~~~  403 (652)
                                   . . ..-..|.|+++-       .-.++||+++...+.|.++.++.....  .  ...+.. ....+
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~r  322 (367)
T TIGR02604       243 GEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFR  322 (367)
T ss_pred             cccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCccc
Confidence                         0 0 111268899887       456789999999999999988632111  1  122222 12269


Q ss_pred             ceEEEEeCCCCEEEEEecCC
Q psy5768         404 PRGIDIDSCDSRIYWTNWNS  423 (652)
Q Consensus       404 P~~Iavdp~~g~Lywtd~~~  423 (652)
                      |++|+++| .|.||++||..
T Consensus       323 p~dv~~~p-DG~Lyv~d~~~  341 (367)
T TIGR02604       323 PVNVTVGP-DGALYVSDWYD  341 (367)
T ss_pred             ccceeECC-CCCEEEEEecc
Confidence            99999999 68899999864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659|consensus

Probab=99.04  E-value=2.2e-08  Score=113.20  Aligned_cols=242  Identities=20%  Similarity=0.247  Sum_probs=161.2

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe---eccCceeeeEEEccCCEEEEEeCCCCeEEEEE-cCCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL---ERQGSVEGLAYEYVHNYLYWTCNNDATINKID-LDSPK  389 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~---~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~-~~~~~  389 (652)
                      -.|+|++|-+ .+.||+-|.  +-|.|+..+|....++-   +....-.-||+|++.+.||.+|....+|+++. +...+
T Consensus       365 ~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d  441 (1899)
T KOG4659|consen  365 FAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD  441 (1899)
T ss_pred             eceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccc
Confidence            3478888754 578999986  67999999987655444   33445667999999999999999999998874 32211


Q ss_pred             Cc--cEEEE-------------------EeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEE-------
Q psy5768         390 AQ--RIVVV-------------------RLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESI-------  441 (652)
Q Consensus       390 ~~--~~~~~-------------------~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l-------  441 (652)
                      ..  .+.+.                   ....+..|+|||+|. .|.||++|.-    .|...+-+|--.+.+       
T Consensus       442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t----~IR~iD~~giIstlig~~~~~~  516 (1899)
T KOG4659|consen  442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGT----RIRVIDTTGIISTLIGTTPDQH  516 (1899)
T ss_pred             cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEeccc----EEEEeccCceEEEeccCCCCcc
Confidence            11  12222                   113567999999997 8999999954    555555554322221       


Q ss_pred             -----------EEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEec-------------------CCCCc
Q psy5768         442 -----------ITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK-------------------ISPLH  491 (652)
Q Consensus       442 -----------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~-------------------~~~~~  491 (652)
                                 +.-.+.||..||+|+-.+.||+.|.  +.|.+++.++.-+.....                   ..+..
T Consensus       517 ~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~  594 (1899)
T KOG4659|consen  517 PPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLI  594 (1899)
T ss_pred             CccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhh
Confidence                       1223679999999999999999985  678888888765522210                   01234


Q ss_pred             eeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCCCCCCCCCCCCCCCCccccccCCC---
Q psy5768         492 PFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDET---  567 (652)
Q Consensus       492 p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~lCl~~~~---  567 (652)
                      |.+|++- .+-||+++....+|-|+-+.+...            .|.++.     ....||...+..| .-|+....   
T Consensus       595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg------------~i~ila-----Ga~S~C~C~~~~~-cdcfs~~~~~A  656 (1899)
T KOG4659|consen  595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDG------------TISILA-----GAKSPCSCDVAAC-CDCFSLRDVAA  656 (1899)
T ss_pred             hhceeecCCceEEEEeccchhhhheEEeccCc------------eEEEec-----CCCCCCCcccccC-Cccccccchhh
Confidence            6788886 679999999888887776643221            123332     1346776666665 23432211   


Q ss_pred             -------CceeeeccCceeeccC
Q psy5768         568 -------GQVVCSCFTGKVLMED  583 (652)
Q Consensus       568 -------~~~~C~Cp~g~~l~~d  583 (652)
                             -...|.-|+|-+...|
T Consensus       657 t~A~lnsp~alaVsPdg~v~IAD  679 (1899)
T KOG4659|consen  657 TQAKLNSPYALAVSPDGDVIIAD  679 (1899)
T ss_pred             hccccCCcceEEECCCCcEEEec
Confidence                   1467899999877666

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.99  E-value=1.2e-09  Score=76.95  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=39.4

Q ss_pred             CeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEec
Q psy5768         143 GYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL  184 (652)
Q Consensus       143 g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~  184 (652)
                      |+|||||++..+.|++++|||+++++++.+.+..|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            689999998667999999999999999999999999999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.98  E-value=2.2e-10  Score=76.73  Aligned_cols=35  Identities=46%  Similarity=1.133  Sum_probs=30.4

Q ss_pred             CCCCCCCCcccceecCCCceEEEeCCc-cccCCCcc
Q psy5768         240 CGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSC  274 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C  274 (652)
                      |..+||+|+|+|+..+.+|+|+|+.|| |.+|+++|
T Consensus         1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence            677899999999998889999999998 77899988

...

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.98  E-value=8.8e-10  Score=77.60  Aligned_cols=42  Identities=38%  Similarity=0.889  Sum_probs=39.4

Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEec
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH  456 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~  456 (652)
                      ++|||||++.. ++|++++|||+++++++..++.+|.|||||+
T Consensus         1 ~~iYWtD~~~~-~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQD-PSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTT-EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCC-cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            58999999976 6999999999999999999999999999995

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.97  E-value=4.3e-07  Score=95.43  Aligned_cols=148  Identities=20%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC------CCcCCccCCCCcEEEEc---cCCcEEEEeC
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ------KKYPAVTACNLHIAVDW---IAQNIYWSDP  107 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~------~~~~~p~~~~~~lavDw---~~~~lY~~d~  107 (652)
                      |++|++|++.|. ++||+++  . .++|+++..+|+....+...      + ...+-    |||++.   .++.||++.+
T Consensus         1 L~~P~~~a~~pd-G~l~v~e--~-~G~i~~~~~~g~~~~~v~~~~~v~~~~-~~gll----gia~~p~f~~n~~lYv~~t   71 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAE--R-SGRIWVVDKDGSLKTPVADLPEVFADG-ERGLL----GIAFHPDFASNGYLYVYYT   71 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEE--T-TTEEEEEETTTEECEEEEE-TTTBTST-TBSEE----EEEE-TTCCCC-EEEEEEE
T ss_pred             CCCceEEEEeCC-CcEEEEe--C-CceEEEEeCCCcCcceecccccccccc-cCCcc----cceeccccCCCCEEEEEEE
Confidence            468999999986 8999999  5 89999999888763333221      2 23344    999998   3578998776


Q ss_pred             CC--------CEEEEEEcCCC-----cEEEEEeC------CCCCceeEEEcCCCCeEEEEecC------------CCCeE
Q psy5768         108 KE--------NVIEVARLTGQ-----YRYVLISG------GVDQPSALAVDPESGYLFWSESG------------KIPLI  156 (652)
Q Consensus       108 ~~--------~~I~v~~~dg~-----~~~~l~~~------~~~~P~~iavd~~~g~lywtd~~------------~~~~I  156 (652)
                      ..        .+|.+..++..     ..++++..      ....-..|+++| .|+||++-..            ..++|
T Consensus        72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceE
Confidence            32        46888877543     23444432      234567899999 7899998421            14689


Q ss_pred             EEEeCCCCC------------cEEEEeecccCceeEEEeccCCEEEEEeC
Q psy5768         157 ARAGLDGKK------------QTILAQEIIMPIKDITLDLKFFSAFYRNL  194 (652)
Q Consensus       157 ~~~~ldg~~------------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~  194 (652)
                      .|.+.||+-            ...++..++..|.|+++|+.+++||..+-
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~  200 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADN  200 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEcc
Confidence            999999872            23456778999999999999999999874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.8e-07  Score=100.27  Aligned_cols=204  Identities=16%  Similarity=0.150  Sum_probs=150.3

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeC--CCCeEEEEEcCCCCCcc
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCN--NDATINKIDLDSPKAQR  392 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~--~~~~I~~~~~~~~~~~~  392 (652)
                      +.+++++....++|..+...+.|..++.+.......+ -+. .|.++|+|+.++.+|.++.  ..+++.+++-..    .
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t----~  150 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT----N  150 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC----C
Confidence            4567788888999999988899999985543322222 233 8999999999999999999  468999998654    2


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceE-E---EEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTES-I---ITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~-l---~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                      ..+........|.++|++|...++|.++...+  .|...+..+..... -   .-.....|.++++++.+.++|.++...
T Consensus       151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~--~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDN--TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             eEEEEEecCCCcceEEECCCCCeEEEEecCCC--eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            33333445568999999999999999996543  66666655543331 0   012345799999999999999999887


Q ss_pred             --CeEEEEecCCCceEEE--ecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         469 --DKIERCDYDGTNRIVL--SKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       469 --~~I~~~~ldG~~~~~l--~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                        ..+..++.........  ..... .|+++++.  +.++|.++...+.+..++..+......+.
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence              5888888877665554  22234 79999986  67999999888999999877665555444

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.97  E-value=2.1e-10  Score=76.86  Aligned_cols=35  Identities=37%  Similarity=0.685  Sum_probs=30.0

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-Ccc
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRS  586 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C  586 (652)
                      |..+||+|+|+|++.|. +++|+||.||+|.+| ++|
T Consensus         1 C~~~NGgC~h~C~~~~g-~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSVNNGGCSHICVNTPG-SYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTTGGGGSSSEEEEETT-SEEEE-STTEEE-TTSSSE
T ss_pred             CCCCCCCcCCCCccCCC-ceEeECCCCCEECcCCCCC
Confidence            67789999999999977 599999999999999 776

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.95  E-value=8e-07  Score=88.42  Aligned_cols=199  Identities=17%  Similarity=0.168  Sum_probs=123.2

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      ..++.|++|++.+++||-+.-..+.|+.++++|.-.+.+- .+.+.++||++- -++.+..++...+++.++.++.....
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3568899999999999999888899999999987666654 778899999994 23444556667888988888432211


Q ss_pred             --cEEE--EEe--C--CCCCceEEEEeCCCCEEEEEecCCCCCceEEEee--cCCCceEEEEc-------CCCCCceEEE
Q psy5768         392 --RIVV--VRL--G--QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF--SGFGTESIITT-------DITMPNALAL  454 (652)
Q Consensus       392 --~~~~--~~~--~--~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l--dG~~~~~l~~~-------~l~~P~glai  454 (652)
                        ...+  +.+  .  .....-|||.||.++.||.+....+ ..|+....  .+....+....       .+..|+||++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence              2211  111  1  2234689999999999999864432 25676665  23232222211       2567999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEecCCCceEEEecC--------CCCceeEEEEe-CCEEEEEcCCCCeEEE
Q psy5768         455 DHQAEKLFWGDARLDKIERCDYDGTNRIVLSKI--------SPLHPFDMAVY-GEFIFWTDWVIHAVLR  514 (652)
Q Consensus       455 D~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~--------~~~~p~glav~-~~~lYwtd~~~~~I~~  514 (652)
                      |+.++.||.......+|-.++.+|.-...+.-.        .+.+|-|||++ ++.||.+.- -+..++
T Consensus       179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~  246 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYR  246 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEE
Confidence            999999999999999999999999865544221        25689999998 569998863 334444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.94  E-value=3.5e-07  Score=96.11  Aligned_cols=222  Identities=18%  Similarity=0.217  Sum_probs=141.6

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-------eccCceeeeEEEc---cCCEEEEEeCCC------
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-------ERQGSVEGLAYEY---VHNYLYWTCNND------  377 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-------~~~~~~~glAvDw---~~~~LYwtd~~~------  377 (652)
                      .+|.+|++.+. ++||+++. .++|+++..+|.....+.       .+.....|||+++   .++.||++-...      
T Consensus         2 ~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    2 NNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            46889999987 79999998 899999997776523222       2445789999998   368899876632      


Q ss_pred             --CeEEEEEcCCCCCc---cEEEEEe-----CCCCCceEEEEeCCCCEEEEEecC-----------CCCCceEEEeecCC
Q psy5768         378 --ATINKIDLDSPKAQ---RIVVVRL-----GQHDKPRGIDIDSCDSRIYWTNWN-----------SHLPSIQRAFFSGF  436 (652)
Q Consensus       378 --~~I~~~~~~~~~~~---~~~~~~~-----~~~~~P~~Iavdp~~g~Lywtd~~-----------~~~~~I~r~~ldG~  436 (652)
                        .+|.+..++.....   .++++..     .....-..|+++| .|+||++-..           ...++|.|.+.||+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence              46777777543111   2333322     1345667899999 6799998422           12469999999997


Q ss_pred             C------------ceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEec--CCCc----------------------
Q psy5768         437 G------------TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY--DGTN----------------------  480 (652)
Q Consensus       437 ~------------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l--dG~~----------------------  480 (652)
                      -            ...++...++.|.+|++|+.+++||.+|.+.+..+.++.  .|.+                      
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence            1            235667799999999999999999999976654444432  2211                      


Q ss_pred             ------eEEEecCCCCceeEEEEe--------CCEEEEEcCCCCeEEEEEccCCceE---EEEecccC-CcceeEEE
Q psy5768         481 ------RIVLSKISPLHPFDMAVY--------GEFIFWTDWVIHAVLRANKYTGEEV---YTLRKNIR-RPMGIVAI  539 (652)
Q Consensus       481 ------~~~l~~~~~~~p~glav~--------~~~lYwtd~~~~~I~~~~k~~g~~~---~~~~~~~~-~p~~i~~~  539 (652)
                            +..... ....|-|++++        .+.++++++..+.|+++...++..+   ..+..... +|.+|.+-
T Consensus       239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~  314 (331)
T PF07995_consen  239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQG  314 (331)
T ss_dssp             -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEE
T ss_pred             CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEc
Confidence                  011111 12468899987        5679999999999999987655332   22233333 55565543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.88  E-value=9.4e-06  Score=84.79  Aligned_cols=280  Identities=11%  Similarity=0.134  Sum_probs=163.5

Q ss_pred             cCCcEEEEeCC----CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC--------CCCeEEEEeCCCCC
Q psy5768          98 IAQNIYWSDPK----ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG--------KIPLIARAGLDGKK  165 (652)
Q Consensus        98 ~~~~lY~~d~~----~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~--------~~~~I~~~~ldg~~  165 (652)
                      -..++|+.|..    .++|.++|.+.....-.+..+ ..|+++ +.|.+..||.+...        ....|...+..--.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            46789999986    489999998876555555544 689996 99999999999861        12356665543222


Q ss_pred             cE-EEEee------cccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCC
Q psy5768         166 QT-ILAQE------IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTN  238 (652)
Q Consensus       166 ~~-~~~~~------~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n  238 (652)
                      .. .+...      ....|..+++.+.+++||+.+.+..+.-.++- ..+.. +          ...|.+          
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD-~~~~k-v----------v~ei~v----------  146 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD-LEGKA-F----------VRMMDV----------  146 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEE-CCCCc-E----------EEEEeC----------
Confidence            11 11110      02356699999999999998877443333221 11111 1          111111          


Q ss_pred             CCCCCCCCCcccceecCCCceEEEeCCcc-----ccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeecccc
Q psy5768         239 PCGVNNGGCAELCLYNGVSAVCACAHGVV-----AQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMM  313 (652)
Q Consensus       239 ~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l-----~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~  313 (652)
                            ++|.++=.....++.=.|..|-+     ..+|+        ..      .....+-+..+ .   +..      
T Consensus       147 ------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~--------~~------~~~~~vf~~~~-~---~v~------  196 (352)
T TIGR02658       147 ------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN--------PK------IKPTEVFHPED-E---YLI------  196 (352)
T ss_pred             ------CCCcEEEEecCCccEEEeecCceEEEEecCCCc--------eE------EeeeeeecCCc-c---ccc------
Confidence                  45666555445567778887732     12222        00      00000000100 0   011      


Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE-----e-ec----cCceee---eEEEccCCEEEEEe-CCC--
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL-----L-ER----QGSVEG---LAYEYVHNYLYWTC-NND--  377 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i-----~-~~----~~~~~g---lAvDw~~~~LYwtd-~~~--  377 (652)
                      .++   .|....++.+|.... +.|+.+++.+...+..     + ..    --.|.|   +|+...++.||.+. ...  
T Consensus       197 ~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       197 NHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             cCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence            122   344445777777766 8999998766433221     1 11    114555   99999999999953 222  


Q ss_pred             ------CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC-EEEEEecCCCCCceEEEeecCCCceEEEE
Q psy5768         378 ------ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS-RIYWTNWNSHLPSIQRAFFSGFGTESIIT  443 (652)
Q Consensus       378 ------~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g-~Lywtd~~~~~~~I~r~~ldG~~~~~l~~  443 (652)
                            +.|+++++..    ++.+-.......|.+|++.|... +||.+++..+  .|...  |....+.+-+
T Consensus       273 thk~~~~~V~ViD~~t----~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~--~VsVi--D~~t~k~i~~  337 (352)
T TIGR02658       273 THKTASRFLFVVDAKT----GKRLRKIELGHEIDSINVSQDAKPLLYALSTGDK--TLYIF--DAETGKELSS  337 (352)
T ss_pred             cccCCCCEEEEEECCC----CeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCC--cEEEE--ECcCCeEEee
Confidence                  5899999755    34444444567999999999999 9999987644  44433  3444444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.86  E-value=1.6e-09  Score=73.56  Aligned_cols=36  Identities=39%  Similarity=0.910  Sum_probs=33.3

Q ss_pred             cccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       591 ~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      +.|.+.+|+|.++.||+..|+|||..||.|||||..
T Consensus         1 ~~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    1 PTCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             CcCcCCeeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence            358889999999999999999999999999999964

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.85  E-value=3.7e-05  Score=77.74  Aligned_cols=294  Identities=15%  Similarity=0.147  Sum_probs=177.7

Q ss_pred             CeEEEecCC---CCeEEEEecCCCeeE-EEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCC-ccE
Q psy5768           1 MFIAVSSPT---QSKIVVCNLEGEYQT-TILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT-KRE   75 (652)
Q Consensus         1 ~~i~v~~~~---~~~I~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs-~~~   75 (652)
                      +.++|.+++   +..|++++++.+.-. .+...    ...+.+|.-|+++++.++||...-....+.|-.+..|.. .+-
T Consensus         3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L   78 (346)
T COG2706           3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL   78 (346)
T ss_pred             eEEEEeeecccCCCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence            468999999   999999998843221 11110    125689999999999999999882222677766666643 444


Q ss_pred             EEEeCC--CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc--CCCcEEE---EEeCC--------CCCceeEEEcC
Q psy5768          76 TVVSQK--KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL--TGQYRYV---LISGG--------VDQPSALAVDP  140 (652)
Q Consensus        76 ~v~~~~--~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~--dg~~~~~---l~~~~--------~~~P~~iavd~  140 (652)
                      +++...  .-..|.    -+++|..++-||.+....+.|.|.-+  +|....+   +...+        -.+++..-++|
T Consensus        79 t~ln~~~~~g~~p~----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          79 TFLNRQTLPGSPPC----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             EEeeccccCCCCCe----EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence            444332  012245    99999999999999999999988865  5654433   21111        12367888999


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCCCcEE----EEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEee
Q psy5768         141 ESGYLFWSESGKIPLIARAGLDGKKQTI----LAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK  216 (652)
Q Consensus       141 ~~g~lywtd~~~~~~I~~~~ldg~~~~~----~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~  216 (652)
                      .+.+|+..|-|.. +|...+++......    .+.. -.-|+-|++.+..+..|.+.--.+.+                 
T Consensus       155 ~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~-G~GPRHi~FHpn~k~aY~v~EL~stV-----------------  215 (346)
T COG2706         155 DGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP-GAGPRHIVFHPNGKYAYLVNELNSTV-----------------  215 (346)
T ss_pred             CCCEEEEeecCCc-eEEEEEcccCccccccccccCC-CCCcceEEEcCCCcEEEEEeccCCEE-----------------
Confidence            8889999998854 66666665211111    1111 12355555555555555532210111                 


Q ss_pred             cCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCC
Q psy5768         217 PYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTD  296 (652)
Q Consensus       217 ~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~  296 (652)
                                .||.-            |          +.       .|                   .-..+-.++. -
T Consensus       216 ----------~v~~y------------~----------~~-------~g-------------------~~~~lQ~i~t-l  236 (346)
T COG2706         216 ----------DVLEY------------N----------PA-------VG-------------------KFEELQTIDT-L  236 (346)
T ss_pred             ----------EEEEE------------c----------CC-------Cc-------------------eEEEeeeecc-C
Confidence                      00000            0          00       00                   0011112221 1


Q ss_pred             CCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEecc--CCcceEEe---eccCceeeeEEEccCCEEE
Q psy5768         297 KSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFN--GSNHRVLL---ERQGSVEGLAYEYVHNYLY  371 (652)
Q Consensus       297 ~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~--g~~~~~i~---~~~~~~~glAvDw~~~~LY  371 (652)
                      ++++.          +-....+|...+..+.||.+|...+.|....++  |+..+.+.   +....|.+..++.-++.|+
T Consensus       237 P~dF~----------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         237 PEDFT----------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             ccccC----------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            22211          113456777788888999999888877665544  33322222   2333599999999999999


Q ss_pred             EEeCCCCeEEEEEcCCCCC
Q psy5768         372 WTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       372 wtd~~~~~I~~~~~~~~~~  390 (652)
                      .+....+.|.+...+...+
T Consensus       307 aa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         307 AANQKSDNITVFERDKETG  325 (346)
T ss_pred             EEccCCCcEEEEEEcCCCc
Confidence            9999999999988876544

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.81  E-value=2.4e-09  Score=71.91  Aligned_cols=34  Identities=41%  Similarity=0.945  Sum_probs=31.7

Q ss_pred             cCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       593 C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      |.+.+|+|.++.||+..++|||++||.|||||..
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence            5668999999999999999999999999999974

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.75  E-value=9.6e-05  Score=78.76  Aligned_cols=341  Identities=12%  Similarity=0.103  Sum_probs=178.3

Q ss_pred             CcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCcee
Q psy5768         100 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD  179 (652)
Q Consensus       100 ~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~g  179 (652)
                      +.+|+++...+.+.+.|.+.....--+..+...+..++..|...++|.++.  .+.|...++.-.....-+..+ ..|.|
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~vsviD~~~~~~v~~i~~G-~~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTVSVIDLATGKVVATIKVG-GNPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeEEEEECCcccEEEEEecC-CCcce
Confidence            445678989999999998765544444443233455777887779999974  467888887655433333333 57999


Q ss_pred             EEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCce
Q psy5768         180 ITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAV  259 (652)
Q Consensus       180 l~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~  259 (652)
                      +++...++.||..++..+....+-....                                                    
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tl----------------------------------------------------  110 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETL----------------------------------------------------  110 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT-----------------------------------------------------
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccc----------------------------------------------------
Confidence            9999999999988776443322200000                                                    


Q ss_pred             EEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEE
Q psy5768         260 CACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTIN  339 (652)
Q Consensus       260 C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~  339 (652)
                                                 ..+..|+. ......    .     ....+.|+...+.....+++-.+.+.|.
T Consensus       111 ---------------------------e~v~~I~~-~~~~~~----~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~  153 (369)
T PF02239_consen  111 ---------------------------EPVKTIPT-GGMPVD----G-----PESRVAAIVASPGRPEFVVNLKDTGEIW  153 (369)
T ss_dssp             ----------------------------EEEEEE---EE-TT----T-----S---EEEEEE-SSSSEEEEEETTTTEEE
T ss_pred             ---------------------------cceeeccc-cccccc----c-----cCCCceeEEecCCCCEEEEEEccCCeEE
Confidence                                       00111111 000000    0     0011223322222222233334456666


Q ss_pred             EEeccCCcce--EEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCc----eEEEEeCCC
Q psy5768         340 SVFFNGSNHR--VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKP----RGIDIDSCD  413 (652)
Q Consensus       340 ~~~~~g~~~~--~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P----~~Iavdp~~  413 (652)
                      .++.......  ..+..-..|++..+|+.++.+|.+....+.|-++++..    .+.+........|    .+-..||..
T Consensus       154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~----~k~v~~i~~g~~p~~~~~~~~php~~  229 (369)
T PF02239_consen  154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT----GKLVALIDTGKKPHPGPGANFPHPGF  229 (369)
T ss_dssp             EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT----TEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred             EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc----ceEEEEeeccccccccccccccCCCc
Confidence            6654332211  12233457999999999999999888888999999754    2333333223333    334488977


Q ss_pred             CEEEEEecCCCCCceEEEeec------CCCceEEEEcC-CCCCceEEEecCCCEEEEE---eCCCCeEEEEecCCCceEE
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFS------GFGTESIITTD-ITMPNALALDHQAEKLFWG---DARLDKIERCDYDGTNRIV  483 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ld------G~~~~~l~~~~-l~~P~glaiD~~~~~LYw~---D~~~~~I~~~~ldG~~~~~  483 (652)
                      |.+ |+..+.....|--...+      -...+++-.-. ...|..+...+.++.||..   ....+.|..+|..-.....
T Consensus       230 g~v-w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~  308 (369)
T PF02239_consen  230 GPV-WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK  308 (369)
T ss_dssp             EEE-EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred             ceE-EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence            765 54443322122112111      12222333222 2455677777777777665   2556789998887653222


Q ss_pred             EecC-CCCceeEEEEe--CCEEEEEcCCCC-eEEEEEccCCceEEEEecccCCcceeEEE
Q psy5768         484 LSKI-SPLHPFDMAVY--GEFIFWTDWVIH-AVLRANKYTGEEVYTLRKNIRRPMGIVAI  539 (652)
Q Consensus       484 l~~~-~~~~p~glav~--~~~lYwtd~~~~-~I~~~~k~~g~~~~~~~~~~~~p~~i~~~  539 (652)
                      -+.. ....+..+.+.  +.++|++.|..+ +|...|..|.+..+.+.  ...|.|+..+
T Consensus       309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f~~  366 (369)
T PF02239_consen  309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKFNV  366 (369)
T ss_dssp             -HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEEEH
T ss_pred             EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEecc
Confidence            1211 11236677775  569999999999 99999999998888877  6678887543

...

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.73  E-value=1.7e-06  Score=92.39  Aligned_cols=198  Identities=18%  Similarity=0.196  Sum_probs=130.0

Q ss_pred             ccceEEEEEEEcCCCeEEEeecc-----------c-ccEEEEec-cCCcc----eEEeeccCceeeeEEEccCCEEEEEe
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQ-----------K-GTINSVFF-NGSNH----RVLLERQGSVEGLAYEYVHNYLYWTC  374 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~-----------~-~~I~~~~~-~g~~~----~~i~~~~~~~~glAvDw~~~~LYwtd  374 (652)
                      .+.++++|++|.. ++||+++..           . .+|.++.. +|...    +++.+++..|.||++...+  ||+++
T Consensus        12 ~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~   88 (367)
T TIGR02604        12 LLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT   88 (367)
T ss_pred             ccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC
Confidence            3577899999976 679999742           2 37888763 33222    3444888999999998644  99986


Q ss_pred             CCCCeEEEEE-cCCCC--C-ccEEEEEe-CC-----CCCceEEEEeCCCCEEEEEecCC-----------------CCCc
Q psy5768         375 NNDATINKID-LDSPK--A-QRIVVVRL-GQ-----HDKPRGIDIDSCDSRIYWTNWNS-----------------HLPS  427 (652)
Q Consensus       375 ~~~~~I~~~~-~~~~~--~-~~~~~~~~-~~-----~~~P~~Iavdp~~g~Lywtd~~~-----------------~~~~  427 (652)
                      .  ..|.++. .++..  . .++.++.. ..     ...+.+++++| .|+||+++...                 ..+.
T Consensus        89 ~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        89 P--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             C--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce
Confidence            4  4677773 33311  1 13344431 11     23488999999 68999987631                 1247


Q ss_pred             eEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC------------CC---------ceEE---
Q psy5768         428 IQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD------------GT---------NRIV---  483 (652)
Q Consensus       428 I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld------------G~---------~~~~---  483 (652)
                      |+|.+.||+..+++ ...+..|+||++|. .+.||.+|.......++..-            |.         ..+.   
T Consensus       166 i~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  243 (367)
T TIGR02604       166 LFRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTG  243 (367)
T ss_pred             EEEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCccccccccccccccccc
Confidence            99999999887654 56789999999997 58889998754443433311            10         0000   


Q ss_pred             ------------Eec-CCCCceeEEEEeC---------CEEEEEcCCCCeEEEEEc
Q psy5768         484 ------------LSK-ISPLHPFDMAVYG---------EFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       484 ------------l~~-~~~~~p~glav~~---------~~lYwtd~~~~~I~~~~k  517 (652)
                                  ... .....|-|++++.         +.+++++|..+.|+++..
T Consensus       244 ~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l  299 (367)
T TIGR02604       244 EWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL  299 (367)
T ss_pred             ccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence                        000 0113688999872         578999999999988765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=5.7e-06  Score=85.20  Aligned_cols=143  Identities=22%  Similarity=0.320  Sum_probs=101.6

Q ss_pred             EEcCCCeEEEeecc-----------cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC---
Q psy5768         321 YDYKRKTLFYSDIQ-----------KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD---  386 (652)
Q Consensus       321 ~D~~~~~lywsd~~-----------~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~---  386 (652)
                      .|+. +++|+++..           .+++||++..|...+.+...+..|.|||+++.++.||++|+..++|++++++   
T Consensus       118 v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~  196 (307)
T COG3386         118 VDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT  196 (307)
T ss_pred             EcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence            3443 678887766           2579999876554444435588999999999999999999999999999987   


Q ss_pred             CCCCccEEEEEe-CCCCCceEEEEeCCCCEEE-EEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEe-cCCCEEEE
Q psy5768         387 SPKAQRIVVVRL-GQHDKPRGIDIDSCDSRIY-WTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD-HQAEKLFW  463 (652)
Q Consensus       387 ~~~~~~~~~~~~-~~~~~P~~Iavdp~~g~Ly-wtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD-~~~~~LYw  463 (652)
                      +...+++..+.. ..-..|=++++|. .|.|| .+-|+.  .+|.+.+.+|.....+. ....+|..+++- ...++||.
T Consensus       197 g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g--~~v~~~~pdG~l~~~i~-lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         197 GPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGG--GRVVRFNPDGKLLGEIK-LPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             CccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCC--ceEEEECCCCcEEEEEE-CCCCCCccceEeCCCcCEEEE
Confidence            333223323322 2448999999998 68887 555543  38999999976554443 344678877775 33688998


Q ss_pred             EeCCC
Q psy5768         464 GDARL  468 (652)
Q Consensus       464 ~D~~~  468 (652)
                      +-+..
T Consensus       273 Ts~~~  277 (307)
T COG3386         273 TSARS  277 (307)
T ss_pred             EecCC
Confidence            86654

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.63  E-value=2e-08  Score=66.63  Aligned_cols=32  Identities=47%  Similarity=1.113  Sum_probs=30.0

Q ss_pred             cCCCceeeccCeecCCccCCCCCCCCCCCCCC
Q psy5768         593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE  624 (652)
Q Consensus       593 C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde  624 (652)
                      |.+.+|+|.++.||+..++|||.+||.|+|||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            56679999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG4499|consensus

Probab=98.62  E-value=6.3e-06  Score=78.35  Aligned_cols=198  Identities=19%  Similarity=0.297  Sum_probs=121.0

Q ss_pred             EEEEEEcCCCeEEEeecccccEEE----------EeccCC-cceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEc
Q psy5768         317 IELSYDYKRKTLFYSDIQKGTINS----------VFFNGS-NHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL  385 (652)
Q Consensus       317 ~~v~~D~~~~~lywsd~~~~~I~~----------~~~~g~-~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~  385 (652)
                      .+..+|..++.|||+|...+.|.|          +.+++. ....++...+.|+..|+-- +.+          ...+.+
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~-G~k----------f~i~nw   86 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGC-GSK----------FVIVNW   86 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEee-cce----------EEEEEc
Confidence            456688889999999987665554          445443 2223334444555555432 111          112233


Q ss_pred             CCCCCccEEEEE---eC---CCCCceEEEEeCCCCEEEEEecCC------CCCceEEEeecCCCceEEEEcCCCCCceEE
Q psy5768         386 DSPKAQRIVVVR---LG---QHDKPRGIDIDSCDSRIYWTNWNS------HLPSIQRAFFSGFGTESIITTDITMPNALA  453 (652)
Q Consensus       386 ~~~~~~~~~~~~---~~---~~~~P~~Iavdp~~g~Lywtd~~~------~~~~I~r~~ldG~~~~~l~~~~l~~P~gla  453 (652)
                      ++.........+   +.   .-.+-..=-|||..+| |.--...      ....-.+..+-|-..+.+. ..+.-||||+
T Consensus        87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-~~v~IsNgl~  164 (310)
T KOG4499|consen   87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIW-NCVGISNGLA  164 (310)
T ss_pred             ccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeee-hhccCCcccc
Confidence            332111111111   00   0122334457785444 6532211      1112334444454555444 4677899999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEecCC-----CceEEEecCC------CCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCc
Q psy5768         454 LDHQAEKLFWGDARLDKIERCDYDG-----TNRIVLSKIS------PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGE  521 (652)
Q Consensus       454 iD~~~~~LYw~D~~~~~I~~~~ldG-----~~~~~l~~~~------~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~  521 (652)
                      -|.+.++.|++|+-...|...++|-     ++|++++.-.      ...|-|++++ ++.||++-|..++|+++|..||+
T Consensus       165 Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  165 WDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             ccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence            9999999999999999997777652     5787776532      3468999998 68999999999999999999998


Q ss_pred             eEEEEe
Q psy5768         522 EVYTLR  527 (652)
Q Consensus       522 ~~~~~~  527 (652)
                      -...+.
T Consensus       245 ~L~eik  250 (310)
T KOG4499|consen  245 ILLEIK  250 (310)
T ss_pred             EEEEEE
Confidence            766655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.62  E-value=0.00033  Score=73.38  Aligned_cols=276  Identities=10%  Similarity=0.090  Sum_probs=158.3

Q ss_pred             CCCEEEEEeccCC----cceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeC---------CCCEEEE
Q psy5768          48 VKGKMFWSNVTKQ----VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDP---------KENVIEV  114 (652)
Q Consensus        48 ~~~~lyw~d~~~~----~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~---------~~~~I~v  114 (652)
                      ...++|++|  ..    .++|+.++.+.....--+..|  ..|.    ++ +...++.||.+.+         ..+.|.+
T Consensus        11 ~~~~v~V~d--~~~~~~~~~v~ViD~~~~~v~g~i~~G--~~P~----~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v   81 (352)
T TIGR02658        11 DARRVYVLD--PGHFAATTQVYTIDGEAGRVLGMTDGG--FLPN----PV-VASDGSFFAHASTVYSRIARGKRTDYVEV   81 (352)
T ss_pred             CCCEEEEEC--CcccccCceEEEEECCCCEEEEEEEcc--CCCc----ee-ECCCCCEEEEEeccccccccCCCCCEEEE
Confidence            457899999  54    278888887765433345555  4577    86 9888999999999         8899999


Q ss_pred             EEcCCC-cEEEEEeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCC
Q psy5768         115 ARLTGQ-YRYVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFF  187 (652)
Q Consensus       115 ~~~dg~-~~~~l~~~------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~  187 (652)
                      +|..-. ....+.-.      -...|..+++.|...+||++++...+.+-..++.......-+.-    |       ...
T Consensus        82 ~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p-------~~~  150 (352)
T TIGR02658        82 IDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----P-------DCY  150 (352)
T ss_pred             EECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----C-------CCc
Confidence            998643 33333221      13456699999988899999876566788887765443322221    1       122


Q ss_pred             EEEEE--------eCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccC-CCCCCCCCCCCCCcccceecCCCc
Q psy5768         188 SAFYR--------NLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGVSA  258 (652)
Q Consensus       188 ~ly~~--------d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q-~~~n~C~~~ng~Cs~lC~~~~~~~  258 (652)
                      .+|..        -.||...+.-+-..++   .         ......+|+.... ...+| .                 
T Consensus       151 ~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~---------~~~~~~vf~~~~~~v~~rP-~-----------------  200 (352)
T TIGR02658       151 HIFPTANDTFFMHCRDGSLAKVGYGTKGN---P---------KIKPTEVFHPEDEYLINHP-A-----------------  200 (352)
T ss_pred             EEEEecCCccEEEeecCceEEEEecCCCc---e---------EEeeeeeecCCccccccCC-c-----------------
Confidence            23322        1232222111111111   0         1122334443211 01111 0                 


Q ss_pred             eEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCC-CCCCCceeeeecc---cc--ceEEEEEEEcCCCeEEEe-
Q psy5768         259 VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS-DLNSPFESIRNST---MM--KNIIELSYDYKRKTLFYS-  331 (652)
Q Consensus       259 ~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~-~~~~p~~~~~~~~---~~--~~~~~v~~D~~~~~lyws-  331 (652)
                             |...||       ..++++....+..+++.... ....++..+....   +.  .-...++++...+++|+. 
T Consensus       201 -------~~~~dg-------~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~  266 (352)
T TIGR02658       201 -------YSNKSG-------RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA  266 (352)
T ss_pred             -------eEcCCC-------cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence                   001122       34555666777777762211 1111222221100   00  112238999999999994 


Q ss_pred             ecc--------cccEEEEeccCCcceEEeeccCceeeeEEEccCC-EEEEEeCCCCeEEEEEcCC
Q psy5768         332 DIQ--------KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHN-YLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       332 d~~--------~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~-~LYwtd~~~~~I~~~~~~~  387 (652)
                      ...        .+.|..++.....+..-+.--..|.+|++...++ .||.++...+.|.++++..
T Consensus       267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             cCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            322        2578888876543333333345899999999999 9999999999999999765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.52  E-value=2.6e-05  Score=77.65  Aligned_cols=176  Identities=16%  Similarity=0.131  Sum_probs=104.1

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC--Cc--cEE--E
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG--TK--RET--V   77 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg--s~--~~~--v   77 (652)
                      +...-....|+..+++|+..+++.-.      .+..+.+|+|- .++++..++  ...++++.+..+.  ..  +..  -
T Consensus        37 faV~d~~~~i~els~~G~vlr~i~l~------g~~D~EgI~y~-g~~~~vl~~--Er~~~L~~~~~~~~~~~~~~~~~~~  107 (248)
T PF06977_consen   37 FAVQDEPGEIYELSLDGKVLRRIPLD------GFGDYEGITYL-GNGRYVLSE--ERDQRLYIFTIDDDTTSLDRADVQK  107 (248)
T ss_dssp             EEEETTTTEEEEEETT--EEEEEE-S------S-SSEEEEEE--STTEEEEEE--TTTTEEEEEEE----TT--EEEEEE
T ss_pred             EEEECCCCEEEEEcCCCCEEEEEeCC------CCCCceeEEEE-CCCEEEEEE--cCCCcEEEEEEeccccccchhhceE
Confidence            33434578899999999998887642      36789999995 667777788  6678888877743  21  111  1


Q ss_pred             EeCC----CcCCccCCCCcEEEEccCCcEEEEeCCCC-EEEEEEc--CCCcEEEEEe-------CCCCCceeEEEcCCCC
Q psy5768          78 VSQK----KYPAVTACNLHIAVDWIAQNIYWSDPKEN-VIEVARL--TGQYRYVLIS-------GGVDQPSALAVDPESG  143 (652)
Q Consensus        78 ~~~~----~~~~p~~~~~~lavDw~~~~lY~~d~~~~-~I~v~~~--dg~~~~~l~~-------~~~~~P~~iavd~~~g  143 (652)
                      ++.+    .....+    |||+|..+++||.+..... .|...+.  .+....+...       ..+..|.++++||.+|
T Consensus       108 ~~l~~~~~~N~G~E----Gla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~  183 (248)
T PF06977_consen  108 ISLGFPNKGNKGFE----GLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTG  183 (248)
T ss_dssp             EE---S---SS--E----EEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTT
T ss_pred             EecccccCCCcceE----EEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCC
Confidence            1211    133478    9999999999999864332 4555554  2222222221       1456899999999999


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEEE--e------ecccCceeEEEeccCCEEEEEeC
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTILA--Q------EIIMPIKDITLDLKFFSAFYRNL  194 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~~--~------~~~~~p~gl~lD~~~~~ly~~d~  194 (652)
                      .||.-+.. ...|...+.+|.-...+-  .      ..+.+|-|||+|. +++||+++-
T Consensus       184 ~lliLS~e-s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE  240 (248)
T PF06977_consen  184 HLLILSDE-SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE  240 (248)
T ss_dssp             EEEEEETT-TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET
T ss_pred             eEEEEECC-CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC
Confidence            99999764 668888888888544332  2      1267899999996 679999875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.42  E-value=0.00037  Score=75.20  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=103.4

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEE------e-CCCcCCccCCCCcEEEEcc------CCcE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV------S-QKKYPAVTACNLHIAVDWI------AQNI  102 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~------~-~~~~~~p~~~~~~lavDw~------~~~l  102 (652)
                      .|..|++|++.+ +++||++.  ...++|+++..++...+.+.      . .+ ...+    +|||+++-      ++.|
T Consensus        28 GL~~Pw~maflP-DG~llVtE--R~~G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GL----lglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        28 GLNKPWALLWGP-DNQLWVTE--RATGKILRVNPETGEVKVVFTLPEIVNDAQ-HNGL----LGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             CCCCceEEEEcC-CCeEEEEE--ecCCEEEEEeCCCCceeeeecCCceeccCC-CCce----eeEEECCCccccCCCcEE
Confidence            689999999997 47999999  65789999987654332221      1 12 2334    49999743      4679


Q ss_pred             EEEeC---------CCCEEEEEEcCCC-----cEEEEEeCC----CCCceeEEEcCCCCeEEEEecCC------------
Q psy5768         103 YWSDP---------KENVIEVARLTGQ-----YRYVLISGG----VDQPSALAVDPESGYLFWSESGK------------  152 (652)
Q Consensus       103 Y~~d~---------~~~~I~v~~~dg~-----~~~~l~~~~----~~~P~~iavd~~~g~lywtd~~~------------  152 (652)
                      |++.+         ...+|.+..++..     ..++++...    ...-..|+++| .|+||++-...            
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcc
Confidence            99852         2567988887631     234555431    23356899998 78999974211            


Q ss_pred             -------------------CCeEEEEeCCCCC----------cEEEEeecccCceeEEEeccCCEEEEEeC
Q psy5768         153 -------------------IPLIARAGLDGKK----------QTILAQEIIMPIKDITLDLKFFSAFYRNL  194 (652)
Q Consensus       153 -------------------~~~I~~~~ldg~~----------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~  194 (652)
                                         .++|.|.+.||+-          +..+...++..|.||++|+ +++||..+-
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~  248 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQ  248 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEec
Confidence                               2379999999973          2356777789999999998 799988664

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.41  E-value=3.6e-05  Score=76.12  Aligned_cols=190  Identities=15%  Similarity=0.162  Sum_probs=134.2

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEE-EeCCCCeEEEEEcCCCCCc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYW-TCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYw-td~~~~~I~~~~~~~~~~~  391 (652)
                      .++.++.|++.+++||-+-.....|..+..+|.-...+- .++..|++|++  ++++.|. +|...+++..+.++.....
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCCccE
Confidence            457799999999999998777788999999997666665 78889999886  6788776 5666778888877643211


Q ss_pred             ---cEEEEEeCC----CCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc--------CCCCCceEEEec
Q psy5768         392 ---RIVVVRLGQ----HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT--------DITMPNALALDH  456 (652)
Q Consensus       392 ---~~~~~~~~~----~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~--------~l~~P~glaiD~  456 (652)
                         ...-+.++.    ..--.|+|-||..+.||++-...+ .+|+...++-+.-..-+..        -+...+||..|.
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence               111122221    234568999999999999865543 3777777544221111110        134567999999


Q ss_pred             CCCEEEEEeCCCCeEEEEecCCCceEEEecC--------CCCceeEEEEe-CCEEEEEc
Q psy5768         457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKI--------SPLHPFDMAVY-GEFIFWTD  506 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~--------~~~~p~glav~-~~~lYwtd  506 (652)
                      .++.|++.-.....+--++++|.-+..+.-.        .+++|-|||.+ ++.||.+.
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            9999999888888888899999876655322        25788999998 56888764

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.37  E-value=1e-06  Score=62.40  Aligned_cols=42  Identities=40%  Similarity=0.737  Sum_probs=37.9

Q ss_pred             EEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCce
Q psy5768         440 SIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR  481 (652)
Q Consensus       440 ~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~  481 (652)
                      +++...+..|+||++|+.+++|||+|.....|++++++|.++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            456668899999999999999999999999999999999763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1520|consensus

Probab=98.28  E-value=4.6e-05  Score=78.38  Aligned_cols=146  Identities=17%  Similarity=0.236  Sum_probs=106.0

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee-c----cCceeeeEEEccCCEEEEEeCCC----CeEEEEE
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE-R----QGSVEGLAYEYVHNYLYWTCNND----ATINKID  384 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~-~----~~~~~glAvDw~~~~LYwtd~~~----~~I~~~~  384 (652)
                      +.|.|++|+.+++.||++|..-| ++.+...|...+.+.. .    ..-..+|.||. .+.+||||+..    ..+..+-
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEee
Confidence            45789999999999999998755 7788888766555542 1    22467899999 99999999865    2343344


Q ss_pred             cCCCCCc---------cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCc---eEEEEcCCCCCceE
Q psy5768         385 LDSPKAQ---------RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT---ESIITTDITMPNAL  452 (652)
Q Consensus       385 ~~~~~~~---------~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~---~~l~~~~l~~P~gl  452 (652)
                      +.+...+         ..+-+.+.++.-|.|+|+.|.+.++-+++...  .+|.|.++.|...   +++++.--..|--|
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~--~ri~rywi~g~k~gt~EvFa~~LPG~PDNI  270 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT--ARIKRYWIKGPKAGTSEVFAEGLPGYPDNI  270 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc--ceeeeeEecCCccCchhhHhhcCCCCCcce
Confidence            4442211         12223457889999999999999999999874  3999999999877   66665345678889


Q ss_pred             EEecCCCEEEEEe
Q psy5768         453 ALDHQAEKLFWGD  465 (652)
Q Consensus       453 aiD~~~~~LYw~D  465 (652)
                      ..|..++  ||+-
T Consensus       271 R~~~~G~--fWVa  281 (376)
T KOG1520|consen  271 RRDSTGH--FWVA  281 (376)
T ss_pred             eECCCCC--EEEE
Confidence            9985443  5553

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.27  E-value=7.7e-05  Score=80.42  Aligned_cols=155  Identities=17%  Similarity=0.250  Sum_probs=108.2

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE------e--eccCceeeeEEEcc------CCEEEEEeC-
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL------L--ERQGSVEGLAYEYV------HNYLYWTCN-  375 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i------~--~~~~~~~glAvDw~------~~~LYwtd~-  375 (652)
                      +++..+.+|+|.+. ++||+++...++|+++..++...+.+      +  .+.+.+.|||+++.      ++.||++-+ 
T Consensus        27 ~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        27 SGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            56778899999874 68999998779999997654332222      1  14567899999954      578999752 


Q ss_pred             --------CCCeEEEEEcCCCCC--c-cEEEEEe---CCCCCceEEEEeCCCCEEEEEecCC------------------
Q psy5768         376 --------NDATINKIDLDSPKA--Q-RIVVVRL---GQHDKPRGIDIDSCDSRIYWTNWNS------------------  423 (652)
Q Consensus       376 --------~~~~I~~~~~~~~~~--~-~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~~~------------------  423 (652)
                              ...+|.+..++....  . .+.++..   .....-..|+++| .|+||++-...                  
T Consensus       106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~  184 (454)
T TIGR03606       106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTP  184 (454)
T ss_pred             cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhcccc
Confidence                    245788888753211  1 2334321   1123456799999 68999973321                  


Q ss_pred             ------------CCCceEEEeecCCC----------ceEEEEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         424 ------------HLPSIQRAFFSGFG----------TESIITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       424 ------------~~~~I~r~~ldG~~----------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                                  ..++|.|.+.||+-          +..|....++.|.||++|+ +++||.+|.+.
T Consensus       185 ~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp  250 (454)
T TIGR03606       185 TQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGP  250 (454)
T ss_pred             ccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCC
Confidence                        13489999999973          3357777899999999998 79999998654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.22  E-value=0.0072  Score=64.49  Aligned_cols=335  Identities=10%  Similarity=0.033  Sum_probs=164.7

Q ss_pred             EEEecCCCCeEEEEecCCC-eeEEEecCCCCCCCCCCC-eeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           3 IAVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSK-ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      .+|+....+.|.++|.+.. .+.+|...        .. ..++.+.+...++|+++  . .+.|..+++.-....--+..
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~--r-dg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTG--------GAPHAGLKFSPDGRYLYVAN--R-DGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-S--------TTEEEEEE-TT-SSEEEEEE--T-TSEEEEEETTSSSEEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCC--------CCceeEEEecCCCCEEEEEc--C-CCeEEEEECCcccEEEEEec
Confidence            5688889999999998854 44555431        23 45577888888999998  5 47899999875543333455


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCC-CcEEEEEeCCC----C--CceeEEEcCCCCeEEEEecCCC
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG-QYRYVLISGGV----D--QPSALAVDPESGYLFWSESGKI  153 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg-~~~~~l~~~~~----~--~P~~iavd~~~g~lywtd~~~~  153 (652)
                      |  ..|.    |+|+...++.+|.++...+.+.++|... +..+.+-..+.    .  ++.+|.-.|. +..|+......
T Consensus        77 G--~~~~----~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~  149 (369)
T PF02239_consen   77 G--GNPR----GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDT  149 (369)
T ss_dssp             S--SEEE----EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTT
T ss_pred             C--CCcc----eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccC
Confidence            5  3478    9999988999999998899999998654 33444332211    2  3345555554 44454444346


Q ss_pred             CeEEEEeCCCCCcEEEE-eecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcce---eeee
Q psy5768         154 PLIARAGLDGKKQTILA-QEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKD---IKIY  229 (652)
Q Consensus       154 ~~I~~~~ldg~~~~~~~-~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---i~v~  229 (652)
                      +.|+..+.......... -+.-..|.+..+|+..+.+|..... .+. ..+.+..+...+..+..+.  .|..   -.+.
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-sn~-i~viD~~~~k~v~~i~~g~--~p~~~~~~~~p  225 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-SNK-IAVIDTKTGKLVALIDTGK--KPHPGPGANFP  225 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-GTE-EEEEETTTTEEEEEEE-SS--SBEETTEEEEE
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccc-cce-eEEEeeccceEEEEeeccc--ccccccccccc
Confidence            78998886544333221 1123679999999877666664332 332 2222211111111111110  1111   1111


Q ss_pred             eeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEE--EEeeecceeEEecCCCCCCCCCceee
Q psy5768         230 SKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFI--MYSRVNRIDSIHMTDKSDLNSPFESI  307 (652)
Q Consensus       230 ~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~L--l~s~~~~i~~i~l~~~~~~~~p~~~~  307 (652)
                      |+..                       +.. .-..|    .+       .+.  ++.. ..+..++   ..+- ..++.+
T Consensus       226 hp~~-----------------------g~v-w~~~~----~~-------~~~~~~ig~-~~v~v~d---~~~w-kvv~~I  265 (369)
T PF02239_consen  226 HPGF-----------------------GPV-WATSG----LG-------YFAIPLIGT-DPVSVHD---DYAW-KVVKTI  265 (369)
T ss_dssp             ETTT-----------------------EEE-EEEEB----SS-------SSEEEEEE---TTT-ST---TTBT-SEEEEE
T ss_pred             CCCc-----------------------ceE-Eeecc----cc-------ceecccccC-Cccccch---hhcC-eEEEEE
Confidence            2100                       000 00000    00       000  0000 0000000   0010 011222


Q ss_pred             eeccccceEEEEEEEcCCCeEEEe---ecccccEEEEeccCCcceEEeeccC--ceeeeEEEccCCEEEEEeCCCC-eEE
Q psy5768         308 RNSTMMKNIIELSYDYKRKTLFYS---DIQKGTINSVFFNGSNHRVLLERQG--SVEGLAYEYVHNYLYWTCNNDA-TIN  381 (652)
Q Consensus       308 ~~~~~~~~~~~v~~D~~~~~lyws---d~~~~~I~~~~~~g~~~~~i~~~~~--~~~glAvDw~~~~LYwtd~~~~-~I~  381 (652)
                      ...   +....+..++....||..   +...+.|..++...-....-+....  .+..+.+...++.+|++....+ +|.
T Consensus       266 ~~~---G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~  342 (369)
T PF02239_consen  266 PTQ---GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIV  342 (369)
T ss_dssp             E-S---SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred             ECC---CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEE
Confidence            211   222456667777767665   3556778888866532111112112  4889999999999999999888 999


Q ss_pred             EEEcCCCCCccEEEEEeCCCCCceEE
Q psy5768         382 KIDLDSPKAQRIVVVRLGQHDKPRGI  407 (652)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~P~~I  407 (652)
                      +++....    +.+-... +..|.|+
T Consensus       343 v~D~~Tl----~~~~~i~-~~tP~G~  363 (369)
T PF02239_consen  343 VYDAKTL----KEKKRIP-VPTPTGK  363 (369)
T ss_dssp             EEETTTT----EEEEEEE---SEEEE
T ss_pred             EEECCCc----EEEEEEE-eeCCCeE
Confidence            9997653    3333333 6677775

...

>KOG1520|consensus

Probab=98.21  E-value=1.6e-05  Score=81.72  Aligned_cols=173  Identities=18%  Similarity=0.170  Sum_probs=113.9

Q ss_pred             eEEEeecccccEEEEecc----CCcce-----EEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEE
Q psy5768         327 TLFYSDIQKGTINSVFFN----GSNHR-----VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVR  397 (652)
Q Consensus       327 ~lywsd~~~~~I~~~~~~----g~~~~-----~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~  397 (652)
                      -|+|+-...+-|-++...    .+...     ....--++|-|||+|-.++.||++|.-.+ +.+++..|..   .+.+.
T Consensus        77 il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~---a~~l~  152 (376)
T KOG1520|consen   77 ILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGL---AELLA  152 (376)
T ss_pred             eEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-eEEECCCCCc---ceecc
Confidence            357766555666555541    11111     11123479999999999999999998765 5566655432   22222


Q ss_pred             eCCC----CCceEEEEeCCCCEEEEEecCCC---------------CCceEEEeecCCCceEEEEcCCCCCceEEEecCC
Q psy5768         398 LGQH----DKPRGIDIDSCDSRIYWTNWNSH---------------LPSIQRAFFSGFGTESIITTDITMPNALALDHQA  458 (652)
Q Consensus       398 ~~~~----~~P~~Iavdp~~g~Lywtd~~~~---------------~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~  458 (652)
                      ....    .-..++.|++ .|.+||||....               .+++.|.+..-...++|. +++..|||+++.+++
T Consensus       153 ~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~  230 (376)
T KOG1520|consen  153 DEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDG  230 (376)
T ss_pred             ccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCC
Confidence            2222    2345689999 999999997642               234444433333333443 478899999999999


Q ss_pred             CEEEEEeCCCCeEEEEecCCCce---EEEecCCCCceeEEEEeCCEEEEE
Q psy5768         459 EKLFWGDARLDKIERCDYDGTNR---IVLSKISPLHPFDMAVYGEFIFWT  505 (652)
Q Consensus       459 ~~LYw~D~~~~~I~~~~ldG~~~---~~l~~~~~~~p~glav~~~~lYwt  505 (652)
                      ..+-+++....+|.++=+.|...   +++.++-...|--|...++-=||.
T Consensus       231 sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWV  280 (376)
T KOG1520|consen  231 SFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWV  280 (376)
T ss_pred             CEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEE
Confidence            99999999999999999999765   555554456788888775443444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0014  Score=72.13  Aligned_cols=204  Identities=11%  Similarity=0.076  Sum_probs=128.5

Q ss_pred             EEEEEEEcCCCeEEEeecc--cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQ--KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~  391 (652)
                      +....+.+..++|+|+...  ...|+.+++.+...+.+...-+.....++.+.++.|+++....+  .|+++++.+..  
T Consensus       220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--  297 (448)
T PRK04792        220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--  297 (448)
T ss_pred             ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--
Confidence            3456778888888887543  34688888877655444422223346788888999988754333  58888876532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--C
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--D  469 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--~  469 (652)
                      .+.+.  .........+.+|...+|+++......+.|++.++++...+.+.. .-.+..+.++.++++.||++....  .
T Consensus       298 ~~~lt--~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        298 LTRIT--RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             eEECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCCce
Confidence            22221  122345667888988888877543334689999998766555432 222344668888899999986533  4


Q ss_pred             eEEEEecCCCceEEEecCC-CCceeEEEEeCCEEEEEcCCCC--eEEEEEccCCceEEEE
Q psy5768         470 KIERCDYDGTNRIVLSKIS-PLHPFDMAVYGEFIFWTDWVIH--AVLRANKYTGEEVYTL  526 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~-~~~p~glav~~~~lYwtd~~~~--~I~~~~k~~g~~~~~~  526 (652)
                      .|+.+++++...+.+.... ...| +.+-++.+|+++....+  .++.++. +|...+.+
T Consensus       375 ~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l  432 (448)
T PRK04792        375 NIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL  432 (448)
T ss_pred             EEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            7889999988766654432 1233 34445678877654433  3666665 56554444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.10  E-value=6.4e-06  Score=58.22  Aligned_cols=41  Identities=41%  Similarity=0.693  Sum_probs=36.4

Q ss_pred             EEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc
Q psy5768          76 TVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY  121 (652)
Q Consensus        76 ~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~  121 (652)
                      +++..+ +..|.    |||+||..++|||+|...+.|.+++++|..
T Consensus         2 ~~~~~~-~~~~~----~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        2 TLLSEG-LGHPN----GLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             EEEECC-CCCcC----EEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            345566 88899    999999999999999999999999999974

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.06  E-value=0.0018  Score=66.45  Aligned_cols=175  Identities=14%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             CeEEEEecCCC-eeEEEecCCCCCCCCCCCeeEEEEECCC-----CEEEEEeccCCcceEEEEEcCC-CccEEEE-----
Q psy5768          11 SKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVK-----GKMFWSNVTKQVVTIEMAFMDG-TKRETVV-----   78 (652)
Q Consensus        11 ~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~-----~~lyw~d~~~~~~~I~~~~~dg-s~~~~v~-----   78 (652)
                      -+|+.+|+... .++++.- .......-+....+.+|...     +++|++|  .+...|..+++.. ..++++-     
T Consensus        34 pKLv~~Dl~t~~li~~~~~-p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD--~~~~glIV~dl~~~~s~Rv~~~~~~~  110 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPF-PPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD--SGGPGLIVYDLATGKSWRVLHNSFSP  110 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE---CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE--TTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred             cEEEEEECCCCcEEEEEEC-ChHHcccccccceEEEEccCCCCcceEEEEeC--CCcCcEEEEEccCCcEEEEecCCcce
Confidence            59999999955 4444431 11122245678889999855     5999999  7777888887664 3333321     


Q ss_pred             --------eCC-CcCCccCCCCcEEEEccC---CcEEEEeCCCCEEEEEEcC----CC---------cEEEEEeCCCCCc
Q psy5768          79 --------SQK-KYPAVTACNLHIAVDWIA---QNIYWSDPKENVIEVARLT----GQ---------YRYVLISGGVDQP  133 (652)
Q Consensus        79 --------~~~-~~~~p~~~~~~lavDw~~---~~lY~~d~~~~~I~v~~~d----g~---------~~~~l~~~~~~~P  133 (652)
                              -.+ .+..+. ...|+|+..+.   +.|||.--...++.+....    .+         ..+.+... ..+-
T Consensus       111 ~p~~~~~~i~g~~~~~~d-g~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k-~~~s  188 (287)
T PF03022_consen  111 DPDAGPFTIGGESFQWPD-GIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK-GSQS  188 (287)
T ss_dssp             S-SSEEEEETTEEEEETT-SEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SE
T ss_pred             eccccceeccCceEecCC-CccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecccc-CCCC
Confidence                    111 011111 12378887644   4699988777778777641    11         12333332 2466


Q ss_pred             eeEEEcCCCCeEEEEecCCCCeEEEEeCCC----CCcEEEEee-c-ccCceeEEEec-cCCEEEEE
Q psy5768         134 SALAVDPESGYLFWSESGKIPLIARAGLDG----KKQTILAQE-I-IMPIKDITLDL-KFFSAFYR  192 (652)
Q Consensus       134 ~~iavd~~~g~lywtd~~~~~~I~~~~ldg----~~~~~~~~~-~-~~~p~gl~lD~-~~~~ly~~  192 (652)
                      .++++|+ +|.||+++.. ...|.+.+.++    .+...++.. . +.||.+++++. ..+.||+.
T Consensus       189 ~g~~~D~-~G~ly~~~~~-~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  189 DGMAIDP-NGNLYFTDVE-QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             CEEEEET-TTEEEEEECC-CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             ceEEECC-CCcEEEecCC-CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence            7999998 9999999986 66899999888    344444443 3 89999999997 46788874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.00  E-value=0.0023  Score=65.66  Aligned_cols=148  Identities=17%  Similarity=0.194  Sum_probs=95.5

Q ss_pred             CceeeeEEEccC-----CEEEEEeCCCCeEEEEEcCCCCCccEEE------------EEe-----CCCCCceEEEEeC--
Q psy5768         356 GSVEGLAYEYVH-----NYLYWTCNNDATINKIDLDSPKAQRIVV------------VRL-----GQHDKPRGIDIDS--  411 (652)
Q Consensus       356 ~~~~glAvDw~~-----~~LYwtd~~~~~I~~~~~~~~~~~~~~~------------~~~-----~~~~~P~~Iavdp--  411 (652)
                      .....|+||-..     +.+|+||.....|.|+++...+. ++.+            +..     .......+||+.|  
T Consensus        61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~  139 (287)
T PF03022_consen   61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS  139 (287)
T ss_dssp             GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred             cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence            356789999754     58999999988999998865221 1111            000     1112357788877  


Q ss_pred             -CCCEEEEEecCCCCCceEEEeec----CCC---------ceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         412 -CDSRIYWTNWNSHLPSIQRAFFS----GFG---------TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       412 -~~g~Lywtd~~~~~~~I~r~~ld----G~~---------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                       ..+.|||.-..+.  +++++..+    .+.         .+.+. .......|+++|. ++.||+++...+.|.+.+.+
T Consensus       140 ~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~  215 (287)
T PF03022_consen  140 PDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPD  215 (287)
T ss_dssp             TTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEET-TTEEEEEECCCTEEEEEETT
T ss_pred             CCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECC-CCcEEEecCCCCeEEEEeCC
Confidence             4568999976543  67777652    211         12222 2223456999997 89999999999999999999


Q ss_pred             C----CceEEEecC-C-CCceeEEEEeC---CEEEEEcCC
Q psy5768         478 G----TNRIVLSKI-S-PLHPFDMAVYG---EFIFWTDWV  508 (652)
Q Consensus       478 G----~~~~~l~~~-~-~~~p~glav~~---~~lYwtd~~  508 (652)
                      +    .+.+++... . +..|-++++.+   ++||+...+
T Consensus       216 ~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  216 GPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             TSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             CCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            8    455555543 3 67899999988   899997633

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.91  E-value=0.0059  Score=66.95  Aligned_cols=199  Identities=10%  Similarity=0.031  Sum_probs=125.9

Q ss_pred             eEEEEEEEcCCCeEEEeec--ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDI--QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKA  390 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~--~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~  390 (652)
                      .+....+.+..++|+++..  ....|+..++.+...+.+....+...+.++.+.++.|+++-..  ...|+++++.+.. 
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-  281 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-  281 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-
Confidence            4567778888888888754  3357999998776555554333344567888889998876543  3468888886532 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--  468 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--  468 (652)
                       .+.+ . .........+..|...+|+++......+.|++.+++|...+.+.... ..-...++.+++++|+++....  
T Consensus       282 -~~~L-t-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        282 -TTRL-T-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             -eEEc-c-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCc
Confidence             2222 1 12233456788888777766543323468999999988776655322 2234567888899998875433  


Q ss_pred             CeEEEEecCCCceEEEecCCCCceeEEEE--eCCEEEEEcCCC-----CeEEEEEccCC
Q psy5768         469 DKIERCDYDGTNRIVLSKISPLHPFDMAV--YGEFIFWTDWVI-----HAVLRANKYTG  520 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~~~p~glav--~~~~lYwtd~~~-----~~I~~~~k~~g  520 (652)
                      ..|..++++|...+.+....  ...++++  ++.+||++-...     ..++.++..++
T Consensus       358 ~~i~~~d~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        358 FSIGVMKPDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             eEEEEEECCCCceEeccCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            47899999887766654422  2333444  456887754322     36888887544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.86  E-value=0.0045  Score=67.81  Aligned_cols=204  Identities=15%  Similarity=0.142  Sum_probs=125.3

Q ss_pred             EEEEEEEcCCCeEEEeecc--cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQ--KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~  391 (652)
                      +....+.+..++|+++...  ...|+..++++...+.+....+.....++.+.++.|+++-..  ...|.++++.+..  
T Consensus       206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--  283 (433)
T PRK04922        206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--  283 (433)
T ss_pred             cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--
Confidence            4566778888888887643  346898898776555554222233467888889999876433  3469888886532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC--CC
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR--LD  469 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--~~  469 (652)
                      .+.+.  .........+.+|...+|+++......+.|+..++++...+.+.... ......++.++++.|+++...  ..
T Consensus       284 ~~~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        284 LTRLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             eEECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCce
Confidence            22221  12223356788998777777643222358999998876655544322 344568888899999997543  23


Q ss_pred             eEEEEecCCCceEEEecCC-CCceeEEEEeCCEEEEEcCC--CCeEEEEEccCCceEEEE
Q psy5768         470 KIERCDYDGTNRIVLSKIS-PLHPFDMAVYGEFIFWTDWV--IHAVLRANKYTGEEVYTL  526 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~-~~~p~glav~~~~lYwtd~~--~~~I~~~~k~~g~~~~~~  526 (652)
                      .|..+++++...+.+.... ...| ..+-++.+|+++...  ...|+.++. +|...+.+
T Consensus       361 ~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l  418 (433)
T PRK04922        361 RIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRL  418 (433)
T ss_pred             eEEEEECCCCCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEEc
Confidence            6899999887766554432 1222 233346677776432  345777766 34433333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.86  E-value=0.01  Score=64.63  Aligned_cols=204  Identities=15%  Similarity=0.080  Sum_probs=124.4

Q ss_pred             EEEEEEEcCCCeEEEeeccc--ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC--CeEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQK--GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND--ATINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~--~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~--~~I~~~~~~~~~~~  391 (652)
                      ....++.+..++|+|+....  ..|+..++.+...+.+...-+....+++.+.++.||++....  ..|..+++.+..  
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--  269 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--  269 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--
Confidence            45566788888888876543  568888887654444433223445678888888898875533  468888876532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--C
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--D  469 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--~  469 (652)
                      .+.+..  ........+..|...+|+++......+.|+..++++...+.+.. .......+++.+.++.|+++....  .
T Consensus       270 ~~~l~~--~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~  346 (417)
T TIGR02800       270 LTRLTN--GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGF  346 (417)
T ss_pred             EEECCC--CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCce
Confidence            222221  11222345677877788776543334589999998876554443 223456778888899999986543  4


Q ss_pred             eEEEEecCCCceEEEecCC-CCceeEEEEeCCEEEEEcCCCC-eEEEEEccCCceEEE
Q psy5768         470 KIERCDYDGTNRIVLSKIS-PLHPFDMAVYGEFIFWTDWVIH-AVLRANKYTGEEVYT  525 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~-~~~p~glav~~~~lYwtd~~~~-~I~~~~k~~g~~~~~  525 (652)
                      .|..+++++...+.+.... ...| ..+-++.+|+++....+ ....+...+|.....
T Consensus       347 ~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~  403 (417)
T TIGR02800       347 NIAVMDLDGGGERVLTDTGLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR  403 (417)
T ss_pred             EEEEEeCCCCCeEEccCCCCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence            7899999887666655432 1222 33445678888765443 233333344544433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.012  Score=64.29  Aligned_cols=202  Identities=13%  Similarity=0.118  Sum_probs=125.4

Q ss_pred             eEEEEEEEcCCCeEEEeecc--cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQ--KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKA  390 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~  390 (652)
                      .+....+.+..++|+|+...  ...|+..++++...+.+...-+.....++.+.++.|+++-..  ...|+++++++.. 
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-  278 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-  278 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-
Confidence            34667788888888776543  346999998876555554322233457787888889876543  3468888887632 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--  468 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--  468 (652)
                       .+. +. .........+..|....|+++......+.|++.++++...+.+.... ......++.++++.|+++....  
T Consensus       279 -~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~  354 (430)
T PRK00178        279 -LSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGN  354 (430)
T ss_pred             -eEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCc
Confidence             222 21 12223445677887777877643333468999998877655554221 2233467788899999986533  


Q ss_pred             CeEEEEecCCCceEEEecCCC-CceeEEEEeCCEEEEEcCCC--CeEEEEEccCCceE
Q psy5768         469 DKIERCDYDGTNRIVLSKISP-LHPFDMAVYGEFIFWTDWVI--HAVLRANKYTGEEV  523 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~-~~p~glav~~~~lYwtd~~~--~~I~~~~k~~g~~~  523 (652)
                      ..|..+++++...+.+..... ..| .++-++.+|+++....  ..|+.++. +|...
T Consensus       355 ~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~  410 (430)
T PRK00178        355 FHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVR  410 (430)
T ss_pred             eEEEEEECCCCCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence            368899999877766654321 223 3444567888876543  34666665 34433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.81  E-value=9e-05  Score=61.10  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             EEEEeCCCCEEEEEecCC---------------CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe
Q psy5768         406 GIDIDSCDSRIYWTNWNS---------------HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDK  470 (652)
Q Consensus       406 ~Iavdp~~g~Lywtd~~~---------------~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~  470 (652)
                      +|+|++..|.+||||...               ..+++.+.++.....+++. .++..|||+++..++.-|++++....+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCce
Confidence            689999889999998642               2468888888876666665 479999999999999999999999999


Q ss_pred             EEEEecCCC
Q psy5768         471 IERCDYDGT  479 (652)
Q Consensus       471 I~~~~ldG~  479 (652)
                      |.+.-+.|.
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999988873

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.81  E-value=0.013  Score=64.14  Aligned_cols=206  Identities=10%  Similarity=0.056  Sum_probs=126.7

Q ss_pred             eEEEEEEEcCCCeEEEeec--ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC--CeEEEEEcCCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDI--QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND--ATINKIDLDSPKA  390 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~--~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~--~~I~~~~~~~~~~  390 (652)
                      ......+.+..++|.|+..  ....|+..++++...+.+...-+....+++.+.++.|+++....  ..|+++++++.. 
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-  278 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-  278 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-
Confidence            3557788888888877643  23468888887765555543223345678999999999975433  368888886532 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC--C
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR--L  468 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--~  468 (652)
                       .+. +. .........+..|....|+++......+.|++.+++|...+.+.. ........++.+++++|+++...  .
T Consensus       279 -~~~-lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        279 -IRQ-VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             -EEE-cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCC
Confidence             222 22 222355678889987777655332224689999999876665533 22234567788889999887543  3


Q ss_pred             CeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCC--eEEEEEccCCceEEEE
Q psy5768         469 DKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIH--AVLRANKYTGEEVYTL  526 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~--~I~~~~k~~g~~~~~~  526 (652)
                      ..|..+++++...+.+..........++-++.+|+++....+  .++.++. +|...+.+
T Consensus       355 ~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l  413 (429)
T PRK03629        355 QHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL  413 (429)
T ss_pred             ceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence            468889998877766654321122233445667777654332  3455554 45544444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.79  E-value=0.0073  Score=60.54  Aligned_cols=213  Identities=15%  Similarity=0.168  Sum_probs=134.0

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEecc-----CCcceEEe--e------ccCceeeeEEEccCCE--------
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFN-----GSNHRVLL--E------RQGSVEGLAYEYVHNY--------  369 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~-----g~~~~~i~--~------~~~~~~glAvDw~~~~--------  369 (652)
                      ..+.|+.+|++.+.. -++++|..++.....+.+     |.....++  .      ....|.|+.+.-....        
T Consensus        20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            346789999998854 566677777776666665     43333333  1      2347999998744332        


Q ss_pred             -----EEEEeCCCCeEEEEEcCCCCCc---cEEEEEe--CCCCCceEEEEeCC--CCEEEEEecCCCCCceEEEeecCCC
Q psy5768         370 -----LYWTCNNDATINKIDLDSPKAQ---RIVVVRL--GQHDKPRGIDIDSC--DSRIYWTNWNSHLPSIQRAFFSGFG  437 (652)
Q Consensus       370 -----LYwtd~~~~~I~~~~~~~~~~~---~~~~~~~--~~~~~P~~Iavdp~--~g~Lywtd~~~~~~~I~r~~ldG~~  437 (652)
                           ||.|+  .++|..-...- ...   ...++..  ....--+++||-+.  ..+||-+|...  ++|...  |++-
T Consensus        99 ~~a~Fif~tE--dGTisaW~p~v-~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~--g~IDVF--d~~f  171 (336)
T TIGR03118        99 GPSRFLFVTE--DGTLSGWAPAL-GTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ--GRIDVF--KGSF  171 (336)
T ss_pred             cceeEEEEeC--CceEEeecCcC-CcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCC--CceEEe--cCcc
Confidence                 33333  34444322110 000   1112221  12455678888754  67999999963  488754  4444


Q ss_pred             ceEEEEcC-----C---CCCceEEEecCCCEEEEEe-------------CCCCeEEEEecCCCceEEEecCC-CCceeEE
Q psy5768         438 TESIITTD-----I---TMPNALALDHQAEKLFWGD-------------ARLDKIERCDYDGTNRIVLSKIS-PLHPFDM  495 (652)
Q Consensus       438 ~~~l~~~~-----l---~~P~glaiD~~~~~LYw~D-------------~~~~~I~~~~ldG~~~~~l~~~~-~~~p~gl  495 (652)
                      ..+-+...     +   ..|.+|.-  .+++||++=             .+.+.|...+++|.-.+.+.+.. +..|+||
T Consensus       172 ~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       172 RPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGL  249 (336)
T ss_pred             ccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCcee
Confidence            33222111     1   13555543  379999872             24568999999999887776554 8999999


Q ss_pred             EE-------eCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCc
Q psy5768         496 AV-------YGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRP  533 (652)
Q Consensus       496 av-------~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p  533 (652)
                      ++       +.+.|.+-+...++|-..|..+|+.+-.|......|
T Consensus       250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p  294 (336)
T TIGR03118       250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP  294 (336)
T ss_pred             eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence            98       357899999999999999998898777776544444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.77  E-value=0.016  Score=63.47  Aligned_cols=205  Identities=15%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             EEEEEEEcCCCeEEEeeccc--ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQK--GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~--~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~  391 (652)
                      +....+.+..++|+++....  ..|+..++.+.....+....+.....++.+.++.|+++-..  ...|+++++++..  
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--  275 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--  275 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--
Confidence            45677888888888775433  45888888766554443222344567888889999886433  3468888876532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--C
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--D  469 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--~  469 (652)
                      .+.+ . .........+..|...+|+++......+.|+...+++...+.+.... ......++.++++.|+++....  .
T Consensus       276 ~~~l-t-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        276 LRRL-T-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             cEEC-C-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcE
Confidence            2222 1 11223345678898777776543223468999998876655444222 2233567888899998876433  3


Q ss_pred             eEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCC--CeEEEEEccCCceEEEE
Q psy5768         470 KIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVI--HAVLRANKYTGEEVYTL  526 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~--~~I~~~~k~~g~~~~~~  526 (652)
                      .|..+++++...+.+...........+-++.+||++-...  ..++.++. +|...+.+
T Consensus       353 ~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l  410 (427)
T PRK02889        353 KLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL  410 (427)
T ss_pred             EEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence            6899999877766665432111112223455666654322  23556665 45544444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.74  E-value=0.014  Score=63.50  Aligned_cols=203  Identities=11%  Similarity=0.045  Sum_probs=126.0

Q ss_pred             EEEEEEEcCCCe-EEEeecc--cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCC
Q psy5768         316 IIELSYDYKRKT-LFYSDIQ--KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKA  390 (652)
Q Consensus       316 ~~~v~~D~~~~~-lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~  390 (652)
                      .....+.+..++ +|++...  ...|+.+++.+...+.+...-+.....++.+.++.|.++...  ...|+++++++.. 
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-  268 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-  268 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-
Confidence            345667777665 7776543  467999998877666665322223334566678888887643  3579988886542 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC--
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL--  468 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~--  468 (652)
                       .+.+.....  .-..-...|....||++......+.|++++++|...+.+......  + ..+++++++|.++-...  
T Consensus       269 -~~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~-~~~SPDG~~Ia~~~~~~~~  342 (419)
T PRK04043        269 -LTQITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--N-SSVSTYKNYIVYSSRETNN  342 (419)
T ss_pred             -EEEcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--C-ceECCCCCEEEEEEcCCCc
Confidence             222221111  122346888777888876544457999999998877655543322  2 37888899998885432  


Q ss_pred             ------CeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCC--CeEEEEEccCCceEEEE
Q psy5768         469 ------DKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVI--HAVLRANKYTGEEVYTL  526 (652)
Q Consensus       469 ------~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~--~~I~~~~k~~g~~~~~~  526 (652)
                            ..|..++++|...+.|...........+-++..|+++....  ..+..++. +|.....+
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l  407 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLF  407 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEe
Confidence                  47999999988877776543222223444567787765432  24667776 45444444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.73  E-value=0.003  Score=61.95  Aligned_cols=207  Identities=10%  Similarity=0.026  Sum_probs=126.8

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCC
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDK  403 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~  403 (652)
                      ++.+++++..++.|-+.+......+.+- ..-.+|.+|.+++.+ .++++|+.. .|.+++-......+-.+-......+
T Consensus        72 dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~n  149 (353)
T COG4257          72 DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADAN  149 (353)
T ss_pred             CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCC-CeeEecCcc-eeEEecCcccceEEeecccccCCCc
Confidence            4779999999999999986654444443 444589999999854 677888876 7887764322211111111112244


Q ss_pred             ceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCc--eEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCce
Q psy5768         404 PRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT--ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR  481 (652)
Q Consensus       404 P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~--~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~  481 (652)
                      -...++|+ .|.|+||....-.+     .||-...  ++.-.-.-..|+||.+.++ +.+|++....+.|.++|--....
T Consensus       150 let~vfD~-~G~lWFt~q~G~yG-----rLdPa~~~i~vfpaPqG~gpyGi~atpd-Gsvwyaslagnaiaridp~~~~a  222 (353)
T COG4257         150 LETAVFDP-WGNLWFTGQIGAYG-----RLDPARNVISVFPAPQGGGPYGICATPD-GSVWYASLAGNAIARIDPFAGHA  222 (353)
T ss_pred             ccceeeCC-CccEEEeeccccce-----ecCcccCceeeeccCCCCCCcceEECCC-CcEEEEeccccceEEcccccCCc
Confidence            45678888 79999997532111     3333222  2221222346999999865 67888888888898888644344


Q ss_pred             EEEecCC--CCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEeccc-CCcceeEEEe
Q psy5768         482 IVLSKIS--PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI-RRPMGIVAIS  540 (652)
Q Consensus       482 ~~l~~~~--~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~-~~p~~i~~~~  540 (652)
                      +++..-.  -..-..+-.+ -+++..|+|.+++++|++..+-+-...-..+. .+|+.+.|-.
T Consensus       223 ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~  285 (353)
T COG4257         223 EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence            4443211  1122334444 46899999999999999986554322212222 5677776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.0043  Score=61.72  Aligned_cols=177  Identities=15%  Similarity=0.091  Sum_probs=114.8

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEE-----
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV-----   77 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v-----   77 (652)
                      +|......-.|..++.+|+..+++...      -++.|.+|.|- .+|..-.+|  ....+++....+-......     
T Consensus       100 LFav~n~p~~iVElt~~GdlirtiPL~------g~~DpE~Ieyi-g~n~fvi~d--ER~~~l~~~~vd~~t~~~~~~~~~  170 (316)
T COG3204         100 LFAVTNKPAAIVELTKEGDLIRTIPLT------GFSDPETIEYI-GGNQFVIVD--ERDRALYLFTVDADTTVISAKVQK  170 (316)
T ss_pred             EEEecCCCceEEEEecCCceEEEeccc------ccCChhHeEEe-cCCEEEEEe--hhcceEEEEEEcCCccEEeccceE
Confidence            444545567889999999999999864      36888999996 456666688  6677787777664311111     


Q ss_pred             EeCC----CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc--EEEEEeC--------CCCCceeEEEcCCCC
Q psy5768          78 VSQK----KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY--RYVLISG--------GVDQPSALAVDPESG  143 (652)
Q Consensus        78 ~~~~----~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~--~~~l~~~--------~~~~P~~iavd~~~g  143 (652)
                      ++-+    ....-+    |+|.|...+++|++-. ++-|..+..++..  ..+-+..        .+....+++.|+.+|
T Consensus       171 i~L~~~~k~N~GfE----GlA~d~~~~~l~~aKE-r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~  245 (316)
T COG3204         171 IPLGTTNKKNKGFE----GLAWDPVDHRLFVAKE-RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN  245 (316)
T ss_pred             EeccccCCCCcCce----eeecCCCCceEEEEEc-cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence            1111    134578    9999999999999874 3334433333322  1111110        134567899999999


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEE--Eee------cccCceeEEEeccCCEEEEEeCC
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTIL--AQE------IIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~--~~~------~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      .|++-... ...+...+++|.-+..+  ...      ++.+|.|||+|. .+.||++.-.
T Consensus       246 ~LLVLS~E-Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvSEP  303 (316)
T COG3204         246 SLLVLSDE-SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVSEP  303 (316)
T ss_pred             cEEEEecC-CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEecC
Confidence            98887654 44677777877643322  222      278999999995 5778887544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.60  E-value=0.017  Score=62.70  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=114.5

Q ss_pred             CeEEEeecc---cccEEEEeccCCcceEEeeccCceeeeEEEccCCE-EEEEeCC--CCeEEEEEcCCCCCccEEEEEeC
Q psy5768         326 KTLFYSDIQ---KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNY-LYWTCNN--DATINKIDLDSPKAQRIVVVRLG  399 (652)
Q Consensus       326 ~~lywsd~~---~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~-LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~  399 (652)
                      ..+|++...   ..+|+.++.+|...+.+..+ +....-+..+.++. +|++...  ...|+++++.+..  ++.+..  
T Consensus       156 r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~--  230 (419)
T PRK04043        156 RKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIAS--  230 (419)
T ss_pred             eEEEEEEccCCCcceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEec--
Confidence            445555421   34677777778776666543 23334556666774 7776544  4679999986532  333332  


Q ss_pred             CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC--CCeEEEEecC
Q psy5768         400 QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR--LDKIERCDYD  477 (652)
Q Consensus       400 ~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~ld  477 (652)
                      .......-++.|....|.++......+.|+..+++|...+.|....- .-......+++++||++...  ...|+.++++
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            22223345688887788877654445699999998887665543221 11234678889999998643  3479999999


Q ss_pred             CCceEEEecCCCCceeEEEEeCCEEEEEcCCC--------CeEEEEEccCCc
Q psy5768         478 GTNRIVLSKISPLHPFDMAVYGEFIFWTDWVI--------HAVLRANKYTGE  521 (652)
Q Consensus       478 G~~~~~l~~~~~~~p~glav~~~~lYwtd~~~--------~~I~~~~k~~g~  521 (652)
                      |...+.+...+...+ .+.-++++|.++....        ..|+.++..+|.
T Consensus       310 ~g~~~rlt~~g~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        310 SGSVEQVVFHGKNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCeEeCccCCCcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            887755554332232 4555677777765432        356666665554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.59  E-value=0.054  Score=53.48  Aligned_cols=266  Identities=14%  Similarity=0.176  Sum_probs=148.9

Q ss_pred             cEEEEccCCcEEEEeCCCCEEEEEEcC-CCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcE--E
Q psy5768          92 HIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT--I  168 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~~~I~v~~~d-g~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~--~  168 (652)
                      .+|.+. .+-+++++...+.|-..|+. |+...+-+.. -..|++|.++| .|...+||.+.  .|.|.+-.--..+  .
T Consensus        66 dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gp-dg~~Witd~~~--aI~R~dpkt~evt~f~  140 (353)
T COG4257          66 DVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGP-DGSAWITDTGL--AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             ccccCC-CCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECC-CCCeeEecCcc--eeEEecCcccceEEee
Confidence            888886 56677888889999999875 4444433333 47999999999 78999999763  6777643211111  1


Q ss_pred             EEee-cccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCC
Q psy5768         169 LAQE-IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGC  247 (652)
Q Consensus       169 ~~~~-~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~C  247 (652)
                      +-.+ ....-+-..+|.. ++|+++.-.|-.-                  .+.-.-..|+||..- |         -++=
T Consensus       141 lp~~~a~~nlet~vfD~~-G~lWFt~q~G~yG------------------rLdPa~~~i~vfpaP-q---------G~gp  191 (353)
T COG4257         141 LPLEHADANLETAVFDPW-GNLWFTGQIGAYG------------------RLDPARNVISVFPAP-Q---------GGGP  191 (353)
T ss_pred             cccccCCCcccceeeCCC-ccEEEeeccccce------------------ecCcccCceeeeccC-C---------CCCC
Confidence            1111 1122334455543 3444433222110                  011122345566321 1         0000


Q ss_pred             cccceecCCCceEEEeCCccccCCCcccccceEEEEe--eecceeEEecCCCCCCCCCceeeeeccccce-EEEEEEEcC
Q psy5768         248 AELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYS--RVNRIDSIHMTDKSDLNSPFESIRNSTMMKN-IIELSYDYK  324 (652)
Q Consensus       248 s~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s--~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~-~~~v~~D~~  324 (652)
                      .         -.|+-|.|              .+.|+  .++.|-+|+-.++.  .   +.+..++.+.+ ...+-.|+.
T Consensus       192 y---------Gi~atpdG--------------svwyaslagnaiaridp~~~~--a---ev~p~P~~~~~gsRriwsdpi  243 (353)
T COG4257         192 Y---------GICATPDG--------------SVWYASLAGNAIARIDPFAGH--A---EVVPQPNALKAGSRRIWSDPI  243 (353)
T ss_pred             c---------ceEECCCC--------------cEEEEeccccceEEcccccCC--c---ceecCCCcccccccccccCcc
Confidence            0         12332333              34555  46667777642221  1   12222222111 122333543


Q ss_pred             CCeEEEeecccccEEEEeccCCcceE-Ee-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCC
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRV-LL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHD  402 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~-i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~  402 (652)
                       +++..++...+++++++...+.=.. -+ ....+|+.|-||-.+ .++..|...+.|.+.+-...   +-+++- ..-.
T Consensus       244 -g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~sea~agai~rfdpeta---~ftv~p-~pr~  317 (353)
T COG4257         244 -GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWLSEADAGAIGRFDPETA---RFTVLP-IPRP  317 (353)
T ss_pred             -CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEeeccccCceeecCcccc---eEEEec-CCCC
Confidence             6788888888999999866543221 12 344589999999654 45556888999998875432   334443 3345


Q ss_pred             CceEEEEeCCCCEEEEEecCCCC
Q psy5768         403 KPRGIDIDSCDSRIYWTNWNSHL  425 (652)
Q Consensus       403 ~P~~Iavdp~~g~Lywtd~~~~~  425 (652)
                      ++.-+.+++..|.+++++.+...
T Consensus       318 n~gn~ql~gr~ge~W~~e~gvd~  340 (353)
T COG4257         318 NSGNIQLDGRPGELWFTEAGVDA  340 (353)
T ss_pred             CCCceeccCCCCceeecccCcce
Confidence            66789999999999999877653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.56  E-value=0.021  Score=62.70  Aligned_cols=172  Identities=9%  Similarity=0.024  Sum_probs=112.1

Q ss_pred             CeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCC
Q psy5768          11 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACN   90 (652)
Q Consensus        11 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~   90 (652)
                      ..|+++|.+|.....+...       -..+...++.|.+++|+++....+...|+.+++.+...+.+. .. -+...   
T Consensus       182 ~~l~~~d~dg~~~~~lt~~-------~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~-~~-~g~~~---  249 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDG-------SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG-NF-PGMTF---  249 (435)
T ss_pred             eEEEEECCCCCCcEEEecC-------CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee-cC-CCccc---
Confidence            4899999999888777642       135678889999999888762234578999999876655543 22 12233   


Q ss_pred             CcEEEEccCCcEEEEeC--CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEe-cCCCCeEEEEeCCCCCcE
Q psy5768          91 LHIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQT  167 (652)
Q Consensus        91 ~~lavDw~~~~lY~~d~--~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd-~~~~~~I~~~~ldg~~~~  167 (652)
                       ..++...+++|+++-.  +...|.+.++++...+.+... .......+..|...+|+++. ....+.|++.+++|...+
T Consensus       250 -~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        250 -APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             -CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence             5566665677777643  345699999887766555432 22345567788666676654 333568999999887766


Q ss_pred             EEEeecccCceeEEEeccCCEEEEEeCCCC
Q psy5768         168 ILAQEIIMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       168 ~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      .+.... .........+.+++|+++..+++
T Consensus       328 ~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~  356 (435)
T PRK05137        328 RISFGG-GRYSTPVWSPRGDLIAFTKQGGG  356 (435)
T ss_pred             EeecCC-CcccCeEECCCCCEEEEEEcCCC
Confidence            554322 22234567777788877765543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.53  E-value=0.02  Score=62.96  Aligned_cols=179  Identities=12%  Similarity=0.080  Sum_probs=112.7

Q ss_pred             cEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC
Q psy5768         337 TINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS  414 (652)
Q Consensus       337 ~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g  414 (652)
                      +|+.++.+|...+.+...-......++.+.++.|+|+...  ...|+++++.+..  .+.+....  ....+.+..|...
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--~~~lt~~~--g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--REKVTSFP--GINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--eEEecCCC--CCcCCeeECCCCC
Confidence            4555667776666665444455667888889999887543  3468888886532  22222111  2224678999888


Q ss_pred             EEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCce
Q psy5768         415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLHP  492 (652)
Q Consensus       415 ~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~p  492 (652)
                      .|+++........|+..++++...+.+.. ........++.+++++|+++-.  +...|+.+++++...+.+.... ...
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~  352 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQN  352 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCC
Confidence            88886433334589999998876655443 2223456678888888988643  3357999999876655554322 222


Q ss_pred             eEEEE--eCCEEEEEcCCCC--eEEEEEccCCc
Q psy5768         493 FDMAV--YGEFIFWTDWVIH--AVLRANKYTGE  521 (652)
Q Consensus       493 ~glav--~~~~lYwtd~~~~--~I~~~~k~~g~  521 (652)
                      .+.++  ++++||++....+  .|+.++..+|.
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            33343  4678888765443  57777776654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.50  E-value=0.00095  Score=55.10  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             EEEEEcCCCeEEEeecc-----------------cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeE
Q psy5768         318 ELSYDYKRKTLFYSDIQ-----------------KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATI  380 (652)
Q Consensus       318 ~v~~D~~~~~lywsd~~-----------------~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I  380 (652)
                      ++|++..++.||++|..                 +|++.+.++.....++++.++.-|.|+|+...+..|.+++....+|
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri   81 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRI   81 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence            47788888999999852                 3889999998877778889999999999999999999999999999


Q ss_pred             EEEEcCC
Q psy5768         381 NKIDLDS  387 (652)
Q Consensus       381 ~~~~~~~  387 (652)
                      .+.-+.|
T Consensus        82 ~rywl~G   88 (89)
T PF03088_consen   82 LRYWLKG   88 (89)
T ss_dssp             EEEESSS
T ss_pred             EEEEEeC
Confidence            9988766

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.1  Score=56.93  Aligned_cols=202  Identities=9%  Similarity=0.030  Sum_probs=117.8

Q ss_pred             EEEcCCCe--E-EEeecc-cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEE--EcCCCC-C
Q psy5768         320 SYDYKRKT--L-FYSDIQ-KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKI--DLDSPK-A  390 (652)
Q Consensus       320 ~~D~~~~~--l-ywsd~~-~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~--~~~~~~-~  390 (652)
                      .+.+..++  + |.+... ...|+..+++|...+.+...-+.....++.+.++.|.++...  ...|.+.  ++.... +
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g  270 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG  270 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence            45555443  3 344432 356999999887766665333344566888889999887643  2345554  333211 1


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC-ceEEEEcCCCCCceEEEecCCCEEEEEeCC--
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG-TESIITTDITMPNALALDHQAEKLFWGDAR--  467 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~-~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--  467 (652)
                      ..+.+.. .........+..|...+|+++......+.|+++.+++.. ....+...-......+..+++++|+++...  
T Consensus       271 ~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g  349 (428)
T PRK01029        271 KPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG  349 (428)
T ss_pred             cceEeec-CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence            1222221 222333467889987777776533334589998887533 222222222233567788889999987543  


Q ss_pred             CCeEEEEecCCCceEEEecCCCCceeEEEE--eCCEEEEEcC--CCCeEEEEEccCCceE
Q psy5768         468 LDKIERCDYDGTNRIVLSKISPLHPFDMAV--YGEFIFWTDW--VIHAVLRANKYTGEEV  523 (652)
Q Consensus       468 ~~~I~~~~ldG~~~~~l~~~~~~~p~glav--~~~~lYwtd~--~~~~I~~~~k~~g~~~  523 (652)
                      ...|..+++++...+.+.... ....+.++  ++.+||++..  ....|+.++..+++..
T Consensus       350 ~~~I~v~dl~~g~~~~Lt~~~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        350 VRQICVYDLATGRDYQLTTSP-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CcEEEEEECCCCCeEEccCCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            357999999988777765432 23334444  3567876533  3456888887666543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.45  E-value=0.034  Score=60.87  Aligned_cols=171  Identities=12%  Similarity=0.047  Sum_probs=111.6

Q ss_pred             CeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCC
Q psy5768          11 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACN   90 (652)
Q Consensus        11 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~   90 (652)
                      ..|.++|.+|.....+...       -......+++|.+.+|.|+....+...|+..++++...+.+....  ....   
T Consensus       179 ~~l~~~d~dg~~~~~lt~~-------~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~--~~~~---  246 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRS-------PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--RHNG---  246 (429)
T ss_pred             eeEEEEcCCCCCCEEeecC-------CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC--CCcC---
Confidence            3799999999887777532       135677889999998887642234568999998876655553221  2234   


Q ss_pred             CcEEEEccCCcEEEEeC--CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEE-ecCCCCeEEEEeCCCCCcE
Q psy5768          91 LHIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS-ESGKIPLIARAGLDGKKQT  167 (652)
Q Consensus        91 ~~lavDw~~~~lY~~d~--~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywt-d~~~~~~I~~~~ldg~~~~  167 (652)
                       .+++.+.++.|+++..  +...|.+.++++...+.+.... ......+..|...+|+++ +.+..+.|++.++++....
T Consensus       247 -~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        247 -APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             -CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence             5677777788988743  3346989998876555554432 345677888876667554 4433568999998877665


Q ss_pred             EEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         168 ILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       168 ~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      .+.... ......++.+.+++|+++..++
T Consensus       325 ~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        325 RITWEG-SQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             EeecCC-CCccCEEECCCCCEEEEEEccC
Confidence            543322 2234566777777777765543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.43  E-value=0.036  Score=60.29  Aligned_cols=179  Identities=11%  Similarity=0.035  Sum_probs=110.5

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC--CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND--ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD  413 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~  413 (652)
                      ..|+..+.+|...+.+...-......++.+.++.|+|+....  ..|.+.++.+.   ....+. .......+++..|..
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---~~~~~~-~~~~~~~~~~~spDg  245 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---QREKVA-SFPGMNGAPAFSPDG  245 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEee-cCCCCccceEECCCC
Confidence            346666666665555553333455667888899999987543  56888887642   122222 122344568899987


Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCc
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLH  491 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~  491 (652)
                      ..|+++........|+..++++...+.+.... ......++.+++++|+++..  +...|+.+++++...+.+.... ..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~  323 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GY  323 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CC
Confidence            78888754433458999998876655543321 22234566777888988743  3347999999887766554332 23


Q ss_pred             eeEEEE--eCCEEEEEcCCC--CeEEEEEccCC
Q psy5768         492 PFDMAV--YGEFIFWTDWVI--HAVLRANKYTG  520 (652)
Q Consensus       492 p~glav--~~~~lYwtd~~~--~~I~~~~k~~g  520 (652)
                      ...+++  ++.+|+++....  ..|+.++..++
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            334444  466888887543  35777776554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.36  E-value=0.038  Score=60.53  Aligned_cols=179  Identities=13%  Similarity=0.075  Sum_probs=110.6

Q ss_pred             cEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC
Q psy5768         337 TINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS  414 (652)
Q Consensus       337 ~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g  414 (652)
                      .|+.++.+|.....+..+-....+.++.+.++.|+++...  ...|.+.++.+..  .+.+...  .....+.++.|...
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~~~--~g~~~~~~~SpDG~  260 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVASF--RGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEeccC--CCCccCceECCCCC
Confidence            3555566666555555444456677888889999988643  3468888886532  2222211  12334678999888


Q ss_pred             EEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC--CCeEEEEecCCCceEEEecCCCCce
Q psy5768         415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR--LDKIERCDYDGTNRIVLSKISPLHP  492 (652)
Q Consensus       415 ~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~ldG~~~~~l~~~~~~~p  492 (652)
                      +|+++-.....+.|+..++++...+.+... .......++.+++++|+++...  ...|+.+++++...+.+.... ...
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~  338 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYN  338 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCc
Confidence            888775433345899999988765554332 2223467888888888877432  346999999876665554322 222


Q ss_pred             eEEEE--eCCEEEEEcCCC--CeEEEEEccCCc
Q psy5768         493 FDMAV--YGEFIFWTDWVI--HAVLRANKYTGE  521 (652)
Q Consensus       493 ~glav--~~~~lYwtd~~~--~~I~~~~k~~g~  521 (652)
                      ..+++  ++++|+++....  ..|+..+..+|.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            23444  467888875433  257777765554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.35  E-value=0.045  Score=59.88  Aligned_cols=181  Identities=10%  Similarity=0.050  Sum_probs=109.0

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD  413 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~  413 (652)
                      ..|+.++.+|...+.+...-......++.+.++.|+++...  ...|++.++.+..   ...+. .......+.+..|..
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~~l~-~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RRVVA-NFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EEEee-cCCCCccceEECCCC
Confidence            34666666666555554333345567888888898887643  3468888886532   22222 111334578899988


Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCC-CC
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKIS-PL  490 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~-~~  490 (652)
                      ..|+++-.......|+..+++|...+.+.... ......+..+++++|+++..  +...|+.+++++...+.+.... ..
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~  330 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYN  330 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCc
Confidence            88887643333468999999887765553321 22345678888888887643  3457888888876655443222 11


Q ss_pred             ceeEEEEeCCEEEEEcCCCC--eEEEEEccCCc
Q psy5768         491 HPFDMAVYGEFIFWTDWVIH--AVLRANKYTGE  521 (652)
Q Consensus       491 ~p~glav~~~~lYwtd~~~~--~I~~~~k~~g~  521 (652)
                      ..-.+.-++.+|+++....+  .|+..+..+|+
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            11123335778877654332  57777765554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.27  E-value=0.066  Score=58.61  Aligned_cols=180  Identities=10%  Similarity=0.091  Sum_probs=109.7

Q ss_pred             cEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC
Q psy5768         337 TINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS  414 (652)
Q Consensus       337 ~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g  414 (652)
                      +|+.++.+|...+.+...-......++.+.++.|+++...  ...|++.++.+..  .+.+...  .....+.+..|...
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~--~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNF--EGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCC--CCCcCCeEECCCCC
Confidence            3555566666555555443345667888889998776543  3468888886532  2332211  12234678899888


Q ss_pred             EEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC--CCeEEEEecCCCceEEEecCC-CCc
Q psy5768         415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR--LDKIERCDYDGTNRIVLSKIS-PLH  491 (652)
Q Consensus       415 ~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~ldG~~~~~l~~~~-~~~  491 (652)
                      +|+++-.....+.|+..++++...+.+... -......+..+++++||+.-..  ...|+.+++++...+.+.... ...
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            888765433345899999988766554432 2233456777888888887432  347999999877665554322 111


Q ss_pred             eeEEEEeCCEEEEEcCCCC--eEEEEEccCCc
Q psy5768         492 PFDMAVYGEFIFWTDWVIH--AVLRANKYTGE  521 (652)
Q Consensus       492 p~glav~~~~lYwtd~~~~--~I~~~~k~~g~  521 (652)
                      .-.+.-++++|+++....+  .|+.++..+|.
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            1223335678888765433  57777776654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.25  E-value=0.062  Score=58.80  Aligned_cols=201  Identities=14%  Similarity=0.125  Sum_probs=117.5

Q ss_pred             EEEEEEEcCCCeEEEeecc--cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQ--KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~  391 (652)
                      +..+.+.+..++|.++...  ...|+..++.+...+.+....+....+++.+.++.|+++....+  .|+.+++++..  
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--  283 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT--  283 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--
Confidence            4567788888888877543  34688888876554444422223346788888999988754333  57777775532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      .+. +. .......+.+..|...+|+++......+.|++...+|...+.+ ... .  ...++.++++.|+.+..  +.|
T Consensus       284 ~~~-lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~--~~i  355 (429)
T PRK01742        284 PSQ-LT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--YSAQISADGKTLVMING--DNV  355 (429)
T ss_pred             eEe-ec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcC--CCE
Confidence            222 22 2233456788999877777764333346999988887765443 221 1  23567778888888754  567


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCC-CeEEEEEccCCceEEEE
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVI-HAVLRANKYTGEEVYTL  526 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~-~~I~~~~k~~g~~~~~~  526 (652)
                      ..+++.+...+.+.........+.+-++.+|+++.... ..++.+.-.+|+..+.+
T Consensus       356 ~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        356 VKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             EEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            77888766554443322111112223456777765432 23333322355554444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.18  E-value=0.014  Score=64.73  Aligned_cols=185  Identities=11%  Similarity=0.068  Sum_probs=111.5

Q ss_pred             CCCeEEEeecccccEEEEeccCCcceEEe--eccCceeeeEEE-------------------ccCCEEEEEeCCCCeEEE
Q psy5768         324 KRKTLFYSDIQKGTINSVFFNGSNHRVLL--ERQGSVEGLAYE-------------------YVHNYLYWTCNNDATINK  382 (652)
Q Consensus       324 ~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~~~~~~glAvD-------------------w~~~~LYwtd~~~~~I~~  382 (652)
                      ..+.||.-|..+.+|-|++++--....|+  .......|+++.                   ..++.|+-++...+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            35778999999999999998864444444  555566666665                   234445545445566777


Q ss_pred             EEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEE
Q psy5768         383 IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLF  462 (652)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LY  462 (652)
                      ++....    +.+-......+|+.++++|..+++|+|..+...+. ....|+-..+..++.-+  ++...++-..++..|
T Consensus       220 ID~etm----eV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~-tl~em~a~e~d~~vvfn--i~~iea~vkdGK~~~  292 (635)
T PRK02888        220 VDAETM----EVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGV-TLAEMMAAERDWVVVFN--IARIEEAVKAGKFKT  292 (635)
T ss_pred             EECccc----eEEEEEEeCCCcccceECCCCCEEEEeccCcccCc-ceeeeccccCceEEEEc--hHHHHHhhhCCCEEE
Confidence            776543    22222233469999999999999999975433211 22333333332333222  222122222355666


Q ss_pred             EEeCCCCeEEEEecCC-----CceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccC
Q psy5768         463 WGDARLDKIERCDYDG-----TNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       463 w~D~~~~~I~~~~ldG-----~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      +.   .+++..+|...     ......+.. ...|.|+++.  +.++|.+...++.|..++..+
T Consensus       293 V~---gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        293 IG---GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             EC---CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            52   35666666543     222222332 3789999986  679999999999988887654

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.17  E-value=0.00034  Score=49.17  Aligned_cols=39  Identities=26%  Similarity=0.673  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCc--ccceecCCCceEEEeCCcc-ccCCCcc
Q psy5768         236 GTNPCGVNNGGCA--ELCLYNGVSAVCACAHGVV-AQDGKSC  274 (652)
Q Consensus       236 ~~n~C~~~ng~Cs--~lC~~~~~~~~C~C~~G~l-~~dg~~C  274 (652)
                      ++|||......|.  +.|+...++|+|.|+.||. ..++++|
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence            4689998878897  7999999899999999995 4566655

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.16  E-value=0.064  Score=58.72  Aligned_cols=178  Identities=11%  Similarity=0.087  Sum_probs=109.5

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD  413 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~  413 (652)
                      ..|+..+.+|...+.+..+.......++.+.++.|+++...  ...|.+.++.+..  .+.+....  ..-.+++..|..
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~--g~~~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFR--GHNGAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCC--CccCceeECCCC
Confidence            35666666776655555444456778899999999887543  3468888875422  23332222  223468899988


Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCc
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLH  491 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~  491 (652)
                      .+|+++........|+..++++...+.+.... ......++.+++++|+++-.  +...|+.++.+|...+.+ ... ..
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~~  336 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-GY  336 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-CC
Confidence            88888754333357898888877665554322 23457888888888887643  345788888888766554 211 11


Q ss_pred             eeEEEEeCCEEEEEcCCCCeEEEEEccCCce
Q psy5768         492 PFDMAVYGEFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       492 p~glav~~~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      ...+.-++++|+.+..  ..+++.+..+|+.
T Consensus       337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~  365 (429)
T PRK01742        337 SAQISADGKTLVMING--DNVVKQDLTSGST  365 (429)
T ss_pred             CccCCCCCCEEEEEcC--CCEEEEECCCCCe
Confidence            1112224567777653  4566677666653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.04  E-value=0.13  Score=51.01  Aligned_cols=176  Identities=18%  Similarity=0.105  Sum_probs=105.2

Q ss_pred             EEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           3 IAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      ++++....+.|.++++. ++....+..       ....+..+++++.+..++...   ..+.|..+++........+...
T Consensus       107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~  176 (289)
T cd00200         107 ILSSSSRDKTIKVWDVETGKCLTTLRG-------HTDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGH  176 (289)
T ss_pred             EEEEecCCCeEEEEECCCcEEEEEecc-------CCCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEecC
Confidence            44554457888889887 444444432       224689999998866655443   4678888887643322233333


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       ...+.    .++++..++.++.+.. .+.|.+.++........+......+..++.+|. +.++.+-. ..+.|...++
T Consensus       177 -~~~i~----~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~i~~~  248 (289)
T cd00200         177 -TGEVN----SVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS-EDGTIRVWDL  248 (289)
T ss_pred             -ccccc----eEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc-CCCcEEEEEc
Confidence             33466    7787765556666654 788988888753333323222346788999986 66655543 2456777776


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ........+...-..+..+++++.+..|+....+|
T Consensus       249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence            63332222222223567888887766776665553

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=97.04  E-value=0.00042  Score=64.11  Aligned_cols=53  Identities=42%  Similarity=0.727  Sum_probs=41.9

Q ss_pred             CCCceeeccCe--ecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCC----CcccCC
Q psy5768         594 SEHDFKCSDGM--CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNN----KCILSS  650 (652)
Q Consensus       594 ~~~~f~C~~g~--Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~~~----~Ci~~~  650 (652)
                      .++.|.|.+|.  =|+.....|+..||+|||||.+    ...|+.+.|.|.|.    +-||.+
T Consensus        34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG----TsAC~~~~FyC~N~g~~p~~i~~s   92 (176)
T PF12999_consen   34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG----TSACSNGKFYCENKGHIPRYIPSS   92 (176)
T ss_pred             CCCceEecCCCCceecHHHccCcceeCCCCCCccc----cccCcCceEeeccCCCCCceeehh
Confidence            34579999873  3899999999999999999975    34578889999873    456654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.95  E-value=0.47  Score=46.87  Aligned_cols=202  Identities=14%  Similarity=0.060  Sum_probs=119.0

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV  394 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~  394 (652)
                      +..+.+.+..+.|+.+.. .+.|+..+++.......+ .....+..+++... +.++.+....+.|.+.++...    +.
T Consensus        54 i~~~~~~~~~~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~----~~  127 (289)
T cd00200          54 VRDVAASADGTYLASGSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETG----KC  127 (289)
T ss_pred             eeEEEECCCCCEEEEEcC-CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCc----EE
Confidence            447777776656665554 577887777653222222 33336777887766 455556555788888887632    22


Q ss_pred             EEEe-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEE
Q psy5768         395 VVRL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER  473 (652)
Q Consensus       395 ~~~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  473 (652)
                      +... .....+..++++|...+|+.....   ..|...++........+...-.....+++++.++.|+.+.. .+.|..
T Consensus       128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i  203 (289)
T cd00200         128 LTTLRGHTDWVNSVAFSPDGTFVASSSQD---GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKL  203 (289)
T ss_pred             EEEeccCCCcEEEEEEcCcCCEEEEEcCC---CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEE
Confidence            2222 233568899999986666655422   26666666533332333323335678999888778877765 677888


Q ss_pred             EecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         474 CDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       474 ~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .++...............+.++++.. +.++.+....+.|...+..+++....+.
T Consensus       204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             EECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            88875443333322223556777764 4555555456677766665555444443

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.90  E-value=0.0005  Score=41.41  Aligned_cols=22  Identities=41%  Similarity=1.001  Sum_probs=18.6

Q ss_pred             CceEEEeCCc-cccCCCcccccc
Q psy5768         257 SAVCACAHGV-VAQDGKSCSEYD  278 (652)
Q Consensus       257 ~~~C~C~~G~-l~~dg~~C~~~~  278 (652)
                      +|+|.|+.|| |.+|+++|.+.+
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDID   23 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCC
Confidence            5899999998 668999998643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.89  E-value=0.39  Score=50.77  Aligned_cols=142  Identities=16%  Similarity=0.195  Sum_probs=79.2

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEEC----CCCE---EEEEeccCC--cceEEEEEcCC--
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP----VKGK---MFWSNVTKQ--VVTIEMAFMDG--   71 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~~~---lyw~d~~~~--~~~I~~~~~dg--   71 (652)
                      ++++.-....++++|++|+.+..+..         .++-.||+-+    .+++   +..+|  ..  .++|..+.+|+  
T Consensus        70 lIigTdK~~GL~VYdL~Gk~lq~~~~---------Gr~NNVDvrygf~l~g~~vDlavas~--R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDLDGKELQSLPV---------GRPNNVDVRYGFPLNGKTVDLAVASD--RSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             EEEEEETTTEEEEEETTS-EEEEE-S---------S-EEEEEEEEEEEETTEEEEEEEEEE---CCCT-EEEEEEEETTT
T ss_pred             eEEEEeCCCCEEEEcCCCcEEEeecC---------CCcceeeeecceecCCceEEEEEEec--CcCCCCeEEEEEecCCC
Confidence            45555567899999999998876643         2333333321    2222   35566  43  24444444443  


Q ss_pred             CccEEEE------eCCCcCCccCCCCcEEE--EccCCcEEE-EeCCCCEEEEEEc----CCCcEEEEEeC--CCCCceeE
Q psy5768          72 TKRETVV------SQKKYPAVTACNLHIAV--DWIAQNIYW-SDPKENVIEVARL----TGQYRYVLISG--GVDQPSAL  136 (652)
Q Consensus        72 s~~~~v~------~~~~~~~p~~~~~~lav--Dw~~~~lY~-~d~~~~~I~v~~~----dg~~~~~l~~~--~~~~P~~i  136 (652)
                      .....+.      ... +..|.    |+++  +..++.+|. +....+.++...+    +|...-.++..  .-.+|.++
T Consensus       139 g~L~~v~~~~~p~~~~-~~e~y----Glcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC  213 (381)
T PF02333_consen  139 GELTDVTDPAAPIATD-LSEPY----GLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC  213 (381)
T ss_dssp             TEEEE-CBTTC-EE-S-SSSEE----EEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred             CcceEcCCCCcccccc-cccce----eeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence            2222221      233 45567    8888  556778885 3445576666544    34333233332  23589999


Q ss_pred             EEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768         137 AVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus       137 avd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ++|...|+||..+-  ...||+...+
T Consensus       214 VVDDe~g~LYvgEE--~~GIW~y~Ae  237 (381)
T PF02333_consen  214 VVDDETGRLYVGEE--DVGIWRYDAE  237 (381)
T ss_dssp             EEETTTTEEEEEET--TTEEEEEESS
T ss_pred             EEecccCCEEEecC--ccEEEEEecC
Confidence            99999999999985  4689999876

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.85  E-value=0.18  Score=50.93  Aligned_cols=177  Identities=15%  Similarity=0.154  Sum_probs=108.5

Q ss_pred             eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC-----CCCCccEEEEEeC------CCCCceEEEEeCCCCE------
Q psy5768         353 ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD-----SPKAQRIVVVRLG------QHDKPRGIDIDSCDSR------  415 (652)
Q Consensus       353 ~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~-----~~~~~~~~~~~~~------~~~~P~~Iavdp~~g~------  415 (652)
                      ..+..|-|||+.+. +.++++|..++.....+.+     +..  ...++...      ....|.+|++....++      
T Consensus        20 p~L~N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~--~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g   96 (336)
T TIGR03118        20 PGLRNAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQ--DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG   96 (336)
T ss_pred             ccccccceeEecCC-CCEEEecCCcceEEeecCCcccccCCc--cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence            56779999999984 4677788888888888876     322  22333332      2358999999965444      


Q ss_pred             -------EEEEecCCCCCceEEEe--ecCC---CceEEEEcCC--CCCceEEEecC--CCEEEEEeCCCCeEEEEecCCC
Q psy5768         416 -------IYWTNWNSHLPSIQRAF--FSGF---GTESIITTDI--TMPNALALDHQ--AEKLFWGDARLDKIERCDYDGT  479 (652)
Q Consensus       416 -------Lywtd~~~~~~~I~r~~--ldG~---~~~~l~~~~l--~~P~glaiD~~--~~~LYw~D~~~~~I~~~~ldG~  479 (652)
                             ||.|+-+    .|--.+  ++-+   ...+++....  .--.||+|-.-  .++||-+|-..++|...  |++
T Consensus        97 ~~~~a~Fif~tEdG----TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF--d~~  170 (336)
T TIGR03118        97 ITGPSRFLFVTEDG----TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF--KGS  170 (336)
T ss_pred             cccceeEEEEeCCc----eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe--cCc
Confidence                   6666654    332222  2222   1223333221  12348888744  68999999999999886  444


Q ss_pred             ceEEEecCC--------CCceeEEEEeCCEEEEEcCCC-------------CeEEEEEccCCceEEEEec--ccCCccee
Q psy5768         480 NRIVLSKIS--------PLHPFDMAVYGEFIFWTDWVI-------------HAVLRANKYTGEEVYTLRK--NIRRPMGI  536 (652)
Q Consensus       480 ~~~~l~~~~--------~~~p~glav~~~~lYwtd~~~-------------~~I~~~~k~~g~~~~~~~~--~~~~p~~i  536 (652)
                      .+++-+...        ...||+|...++.||+|=...             +.|-..+. +|+.++.+..  .+..|.+|
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGL  249 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCcee
Confidence            443332211        256999999999999974222             22333333 4666665543  23778888


Q ss_pred             EEE
Q psy5768         537 VAI  539 (652)
Q Consensus       537 ~~~  539 (652)
                      ++-
T Consensus       250 a~A  252 (336)
T TIGR03118       250 AIA  252 (336)
T ss_pred             eeC
Confidence            764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.79  E-value=0.18  Score=53.23  Aligned_cols=117  Identities=14%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             CCCCCceEEEEe--CCCCEEEEEecCCCCCceEEEee--cCCCc--eEEEEc-C-CCCCceEEEecCCCEEEEEeCCCCe
Q psy5768         399 GQHDKPRGIDID--SCDSRIYWTNWNSHLPSIQRAFF--SGFGT--ESIITT-D-ITMPNALALDHQAEKLFWGDARLDK  470 (652)
Q Consensus       399 ~~~~~P~~Iavd--p~~g~Lywtd~~~~~~~I~r~~l--dG~~~--~~l~~~-~-l~~P~glaiD~~~~~LYw~D~~~~~  470 (652)
                      ..+..|.|+++.  |..|.+|..-.+.. +.++...|  ++...  -.++.+ . -.+|.|+++|...++||.++... -
T Consensus       153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~-G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~-G  230 (381)
T PF02333_consen  153 TDLSEPYGLCLYRSPSTGALYAFVNGKD-GRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV-G  230 (381)
T ss_dssp             -SSSSEEEEEEEE-TTT--EEEEEEETT-SEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT-E
T ss_pred             cccccceeeEEeecCCCCcEEEEEecCC-ceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc-E
Confidence            355678999985  56676665443332 35665555  34332  223321 1 24788999999999999999875 6


Q ss_pred             EEEEecC---CCceEEEecCC----CCceeEEEEe-----CCEEEEEcCCCCeEEEEEc
Q psy5768         471 IERCDYD---GTNRIVLSKIS----PLHPFDMAVY-----GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       471 I~~~~ld---G~~~~~l~~~~----~~~p~glav~-----~~~lYwtd~~~~~I~~~~k  517 (652)
                      |++++.+   +..++.+....    ....-||+++     .+||..++.+.++....+.
T Consensus       231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            8999987   34555553221    2457899987     2599999998887554444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1219|consensus

Probab=96.78  E-value=0.0013  Score=79.46  Aligned_cols=68  Identities=29%  Similarity=0.672  Sum_probs=43.8

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCcccCcccccCCCceeecc-CeecCCc--cCCCCCCCCCC
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSD-GMCIPFN--QTCDRVYNCHD  620 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~-g~Ci~~~--~~Cd~~~dC~d  620 (652)
                      .+|..|||+  |||   .|...|.|.|+|.||.-|..   ++|+.....|.++  .|.+ |.||+..  +.|    .|+.
T Consensus      3865 d~C~~npCq--hgG---~C~~~~~ggy~CkCpsqysG---~~CEi~~epC~sn--PC~~GgtCip~~n~f~C----nC~~ 3930 (4289)
T KOG1219|consen 3865 DPCNDNPCQ--HGG---TCISQPKGGYKCKCPSQYSG---NHCEIDLEPCASN--PCLTGGTCIPFYNGFLC----NCPN 3930 (4289)
T ss_pred             cccccCccc--CCC---EecCCCCCceEEeCcccccC---cccccccccccCC--CCCCCCEEEecCCCeeE----eCCC
Confidence            345556665  232   57778999999999988744   6888766667543  3555 4788754  334    5665


Q ss_pred             CCCCC
Q psy5768         621 KSDEG  625 (652)
Q Consensus       621 ~sde~  625 (652)
                      |.-..
T Consensus      3931 gyTG~ 3935 (4289)
T KOG1219|consen 3931 GYTGK 3935 (4289)
T ss_pred             CccCc
Confidence            55544

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=96.77  E-value=0.001  Score=61.54  Aligned_cols=56  Identities=30%  Similarity=0.555  Sum_probs=44.1

Q ss_pred             ceeeeccCceeeccCCcccCcccccCCCceeeccC----eecCCccCCCCCCC---CCCCCCCCCCCCCC
Q psy5768         569 QVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG----MCIPFNQTCDRVYN---CHDKSDEGILYCAM  631 (652)
Q Consensus       569 ~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~g----~Ci~~~~~Cd~~~d---C~d~sde~~~~C~~  631 (652)
                      .-.|-||+|    +|   .|..+.|....|.|.|.    ..||...+=||+.|   |=|||||....|.+
T Consensus        55 DdyCDC~DG----SD---EPGTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C~N  117 (176)
T PF12999_consen   55 DDYCDCPDG----SD---EPGTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESGGKCPN  117 (176)
T ss_pred             CcceeCCCC----CC---ccccccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCCCCCcc
Confidence            567999999    55   12235687779999983    68999999999999   99999996655654

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.1  Score=55.37  Aligned_cols=161  Identities=19%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             CceeeeEEEccCCEEEEEeCCC-------------CeEEEEEcCCCCCc-----cEEEEEeCCCCCceEEEEeCCCCEEE
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNND-------------ATINKIDLDSPKAQ-----RIVVVRLGQHDKPRGIDIDSCDSRIY  417 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~~-------------~~I~~~~~~~~~~~-----~~~~~~~~~~~~P~~Iavdp~~g~Ly  417 (652)
                      +.-..|++++.+ +||.+-...             ++|.+++.++.-..     ...+. ...+.+|.+++.||..|.||
T Consensus       177 H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~-s~G~RN~qGl~w~P~tg~Lw  254 (399)
T COG2133         177 HFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIW-SYGHRNPQGLAWHPVTGALW  254 (399)
T ss_pred             cCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceE-EeccCCccceeecCCCCcEE
Confidence            345669999988 999987655             34444443331100     12222 34678999999999999999


Q ss_pred             EEecCC---CCC---------------ceE-------EEeecCCCceEEEEcC-----CCCCceEEEecCC------CEE
Q psy5768         418 WTNWNS---HLP---------------SIQ-------RAFFSGFGTESIITTD-----ITMPNALALDHQA------EKL  461 (652)
Q Consensus       418 wtd~~~---~~~---------------~I~-------r~~ldG~~~~~l~~~~-----l~~P~glaiD~~~------~~L  461 (652)
                      .++.+.   ..+               -++       +..+++.....+....     -..|.||++=.-+      +.|
T Consensus       255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~l  334 (399)
T COG2133         255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDL  334 (399)
T ss_pred             EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcE
Confidence            999886   211               111       1112222221111111     1246788876322      688


Q ss_pred             EEEeCCCCeEEEEecCCCceEE---EecC-CCCceeEEEEe-CCEEEEEcCC-CCeEEEEEcc
Q psy5768         462 FWGDARLDKIERCDYDGTNRIV---LSKI-SPLHPFDMAVY-GEFIFWTDWV-IHAVLRANKY  518 (652)
Q Consensus       462 Yw~D~~~~~I~~~~ldG~~~~~---l~~~-~~~~p~glav~-~~~lYwtd~~-~~~I~~~~k~  518 (652)
                      |.+..+.-.+.+.+.+|..+.+   ++.. ....|.++++. ++.||++|-. ++.|+|+...
T Consensus       335 fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~  397 (399)
T COG2133         335 FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA  397 (399)
T ss_pred             EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence            8888777778889999873332   2332 12589999997 5688888776 6799998753

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.51  E-value=0.0015  Score=39.34  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             ceeeeccCceeeccC-CcccC
Q psy5768         569 QVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       569 ~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +|+|.|+.||.|..| ++|.+
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            489999999999988 88876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.32  E-value=1.9  Score=45.85  Aligned_cols=135  Identities=12%  Similarity=0.057  Sum_probs=94.6

Q ss_pred             eEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceE
Q psy5768         327 TLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRG  406 (652)
Q Consensus       327 ~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~  406 (652)
                      .+-..+.....|...+.+|...+.+..+++.++.|+++..++.+-.++ .+..|++++++..+   ..++.-+.-.-..+
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn---v~~idkS~~~lItd  448 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN---VRLIDKSEYGLITD  448 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC---eeEecccccceeEE
Confidence            344444555577777888887778889999999999999888887765 45789999997642   44444455677788


Q ss_pred             EEEeCCCCEEEEEecCC-CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         407 IDIDSCDSRIYWTNWNS-HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       407 Iavdp~~g~Lywtd~~~-~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                      ++++|..+++=++-... -...|.-..|+|...-.+. +.-..-.+-|+|++++.||+...
T Consensus       449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEec
Confidence            99999887775553211 0127888899986543333 33334456789999999999754

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.29  E-value=0.0026  Score=42.82  Aligned_cols=34  Identities=44%  Similarity=0.886  Sum_probs=25.3

Q ss_pred             CCCCCCCCcc--cceecCCCceEEEeCCccccCCCcc
Q psy5768         240 CGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSC  274 (652)
Q Consensus       240 C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C  274 (652)
                      |..+|++|+.  .|...+.+|.|.|..||.. ||..|
T Consensus         1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G-dG~~C   36 (36)
T PF12947_consen    1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEG-DGFFC   36 (36)
T ss_dssp             TTTGGGGS-TTCEEEE-TTSEEEEE-CEEEC-CSTCE
T ss_pred             CCCCCCCCCCCcEeecCCCCEEeECCCCCcc-CCcCC
Confidence            6677889986  8998888999999999854 77665

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.26  E-value=1.1  Score=44.85  Aligned_cols=176  Identities=14%  Similarity=0.127  Sum_probs=102.7

Q ss_pred             ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEc
Q psy5768         286 VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEY  365 (652)
Q Consensus       286 ~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw  365 (652)
                      .+.|+++++..++    .......+. --...|++.-  +++||---...+..+..+.+.-....-++-.+.--||+.| 
T Consensus        67 ~S~l~~~d~~tg~----~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~d-  138 (264)
T PF05096_consen   67 QSSLRKVDLETGK----VLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTSD-  138 (264)
T ss_dssp             EEEEEEEETTTSS----EEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEEC-
T ss_pred             cEEEEEEECCCCc----EEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEcC-
Confidence            3568888873322    111222211 1123455543  6788888888888888887643222222333466889977 


Q ss_pred             cCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCc----eEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEE
Q psy5768         366 VHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKP----RGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESI  441 (652)
Q Consensus       366 ~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P----~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l  441 (652)
                       +..||.+|+ +.+|...+.......+.  +.......|    .-|..-  +|+||---|.++  .|.|.++.-......
T Consensus       139 -g~~Li~SDG-S~~L~~~dP~~f~~~~~--i~V~~~g~pv~~LNELE~i--~G~IyANVW~td--~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  139 -GKRLIMSDG-SSRLYFLDPETFKEVRT--IQVTDNGRPVSNLNELEYI--NGKIYANVWQTD--RIVRIDPETGKVVGW  210 (264)
T ss_dssp             -SSCEEEE-S-SSEEEEE-TTT-SEEEE--EE-EETTEE---EEEEEEE--TTEEEEEETTSS--EEEEEETTT-BEEEE
T ss_pred             -CCEEEEECC-ccceEEECCcccceEEE--EEEEECCEECCCcEeEEEE--cCEEEEEeCCCC--eEEEEeCCCCeEEEE
Confidence             778999987 67888888655432122  222222333    334443  699988888754  899998876665555


Q ss_pred             EEc-C--------------CCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         442 ITT-D--------------ITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       442 ~~~-~--------------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                      +.- .              ..--||||.|+.+++||++=-.-.+++.+.+.
T Consensus       211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            421 1              11258999999999999997777788877664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=96.26  E-value=0.069  Score=51.48  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC---C--CcEEEEEeC------CCC
Q psy5768          63 TIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT---G--QYRYVLISG------GVD  131 (652)
Q Consensus        63 ~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d---g--~~~~~l~~~------~~~  131 (652)
                      .+++..+++. .+ ++-.. +..+.    |||-|...+..|++|+..-.|...++|   |  +++++++.-      .-.
T Consensus       140 ~Ly~~~~~h~-v~-~i~~~-v~IsN----gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~  212 (310)
T KOG4499|consen  140 ELYSWLAGHQ-VE-LIWNC-VGISN----GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL  212 (310)
T ss_pred             EEEEeccCCC-ce-eeehh-ccCCc----cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC
Confidence            3455555443 22 23344 67788    999998889999999988889878754   2  567787764      234


Q ss_pred             CceeEEEcCCCCeEEEEecCCCCeEEEEeCC-CCC
Q psy5768         132 QPSALAVDPESGYLFWSESGKIPLIARAGLD-GKK  165 (652)
Q Consensus       132 ~P~~iavd~~~g~lywtd~~~~~~I~~~~ld-g~~  165 (652)
                      .|.+++||. .|+||++-|. .++|.+.++. |+-
T Consensus       213 ~PDGm~ID~-eG~L~Va~~n-g~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  213 EPDGMTIDT-EGNLYVATFN-GGTVQKVDPTTGKI  245 (310)
T ss_pred             CCCcceEcc-CCcEEEEEec-CcEEEEECCCCCcE
Confidence            699999996 9999999985 5688888764 443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.21  E-value=1.9  Score=44.77  Aligned_cols=263  Identities=16%  Similarity=0.229  Sum_probs=132.0

Q ss_pred             CCcEEEEeC----CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC----CCC----eEEEEeCCCCCc
Q psy5768          99 AQNIYWSDP----KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG----KIP----LIARAGLDGKKQ  166 (652)
Q Consensus        99 ~~~lY~~d~----~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~----~~~----~I~~~~ldg~~~  166 (652)
                      .+++|+.|.    ...++.+.|.|.....-.+..++..  .+++.|.+..+|.++.-    .++    .|+..+.  +..
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~--~TL   77 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT--QTL   77 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET--TTT
T ss_pred             CcEEEEECCccccccceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEec--CcC
Confidence            467888876    3457888887766665666654333  37788988899987621    111    1233322  222


Q ss_pred             EE----EEee-----cccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCC
Q psy5768         167 TI----LAQE-----IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT  237 (652)
Q Consensus       167 ~~----~~~~-----~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~  237 (652)
                      ..    .+..     ....++-+++...++++|+.+.....-..|                          .+-..+...
T Consensus        78 ~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtV--------------------------VDl~~~kvv  131 (342)
T PF06433_consen   78 SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTV--------------------------VDLAAKKVV  131 (342)
T ss_dssp             EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEE--------------------------EETTTTEEE
T ss_pred             cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEE--------------------------EECCCCcee
Confidence            11    1111     023455566666677777754432211111                          111110000


Q ss_pred             CCCCCCCCCCcccceecCCCceEEEeCCcc-----ccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccc
Q psy5768         238 NPCGVNNGGCAELCLYNGVSAVCACAHGVV-----AQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTM  312 (652)
Q Consensus       238 n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l-----~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~  312 (652)
                      .+-  ...||.++==..+.++.=.|..|.+     .++|+.     .    .....   +.  +..+ . |  .+..   
T Consensus       132 ~ei--~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~-----~----~~~t~---~F--~~~~-d-p--~f~~---  188 (342)
T PF06433_consen  132 GEI--DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE-----A----QKSTK---VF--DPDD-D-P--LFEH---  188 (342)
T ss_dssp             EEE--EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE-----E----EEEEE---ES--STTT-S----B-S----
T ss_pred             eee--cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE-----e----Eeecc---cc--CCCC-c-c--cccc---
Confidence            000  1246777533333478889998852     234531     0    11111   11  1111 0 1  1211   


Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe--ec--------cCceee---eEEEccCCEEEEEeCC---
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL--ER--------QGSVEG---LAYEYVHNYLYWTCNN---  376 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~--------~~~~~g---lAvDw~~~~LYwtd~~---  376 (652)
                            -+|+..++++||... .|.|+.+++.|...+..-  +-        --+|.|   +|++...+.||...-.   
T Consensus       189 ------~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~  261 (342)
T PF06433_consen  189 ------PAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE  261 (342)
T ss_dssp             -------EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred             ------cceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence                  135666788999776 488999999887644322  11        114555   8999999999985421   


Q ss_pred             -C-----CeEEEEEcCCCCCccEEE---------EEeCCCCCceEEEEeCCCCEEEEEecCC
Q psy5768         377 -D-----ATINKIDLDSPKAQRIVV---------VRLGQHDKPRGIDIDSCDSRIYWTNWNS  423 (652)
Q Consensus       377 -~-----~~I~~~~~~~~~~~~~~~---------~~~~~~~~P~~Iavdp~~g~Lywtd~~~  423 (652)
                       +     ..||++++...+  +...         +..++.++|.=++++...+.|++-|...
T Consensus       262 gsHKdpgteVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  262 GSHKDPGTEVWVYDLKTHK--RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             T-TTS-EEEEEEEETTTTE--EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             CCccCCceEEEEEECCCCe--EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence             1     258999886532  1111         2224456666666666666676666553

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.11  E-value=1.5  Score=47.87  Aligned_cols=170  Identities=8%  Similarity=0.048  Sum_probs=97.6

Q ss_pred             CeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCE---EEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCcc
Q psy5768          11 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK---MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVT   87 (652)
Q Consensus        11 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~---lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~   87 (652)
                      ..|.++|.+|...+.+.....    ....|   +|.|...+   +|++. ..+...|+..+++|...+.+....  ....
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~----~~~sP---~wSPDG~~~~~~y~S~-~~g~~~I~~~~l~~g~~~~lt~~~--g~~~  234 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHS----LSITP---TWMHIGSGFPYLYVSY-KLGVPKIFLGSLENPAGKKILALQ--GNQL  234 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCC----Ccccc---eEccCCCceEEEEEEc-cCCCceEEEEECCCCCceEeecCC--CCcc
Confidence            489999999988777654211    22334   58888764   45555 224568999999988766664322  2223


Q ss_pred             CCCCcEEEEccCCcEEEEeCC--CCEEEEE--EcCC---CcEEEEEeCCCCCceeEEEcCCCCeEEEEe-cCCCCeEEEE
Q psy5768          88 ACNLHIAVDWIAQNIYWSDPK--ENVIEVA--RLTG---QYRYVLISGGVDQPSALAVDPESGYLFWSE-SGKIPLIARA  159 (652)
Q Consensus        88 ~~~~~lavDw~~~~lY~~d~~--~~~I~v~--~~dg---~~~~~l~~~~~~~P~~iavd~~~g~lywtd-~~~~~~I~~~  159 (652)
                          ..++.+.+++|.|+-..  ...|.+.  ++++   ...+.+...........+..|...+|+|+. .+..+.|++.
T Consensus       235 ----~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        235 ----MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             ----ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence                45555557777776532  2345553  3332   222333333222334568888666677765 3335678888


Q ss_pred             eCCCC--CcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         160 GLDGK--KQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       160 ~ldg~--~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      .+++.  ....+... .......+..+.+++|+++..+
T Consensus       311 ~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~  347 (428)
T PRK01029        311 QIDPEGQSPRLLTKK-YRNSSCPAWSPDGKKIAFCSVI  347 (428)
T ss_pred             ECcccccceEEeccC-CCCccceeECCCCCEEEEEEcC
Confidence            87643  23333222 1233456677777778776544

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.06  E-value=0.14  Score=54.40  Aligned_cols=123  Identities=19%  Similarity=0.173  Sum_probs=77.3

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcce------EEEEEcCCC----ccEEE-------------EeCC-CcCCccCC---
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVT------IEMAFMDGT----KRETV-------------VSQK-KYPAVTAC---   89 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~------I~~~~~dgs----~~~~v-------------~~~~-~~~~p~~~---   89 (652)
                      +++|.|+++||.++.||.+|  .+...      +.+. ..|.    .....             .... ....-.|.   
T Consensus       238 ~RN~qGl~w~P~tg~Lw~~e--~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~  314 (399)
T COG2133         238 HRNPQGLAWHPVTGALWTTE--HGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHI  314 (399)
T ss_pred             cCCccceeecCCCCcEEEEe--cCCCcccCccccccc-ccCCccCCceeccCcccCccccCCCcccccccCCceeecccc
Confidence            58999999999999999999  55411      2221 1111    00000             0000 00011122   


Q ss_pred             -CCcEEEEccC------CcEEEEeCCCCEEEEEEcCCCcE---EEEEeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5768          90 -NLHIAVDWIA------QNIYWSDPKENVIEVARLTGQYR---YVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIAR  158 (652)
Q Consensus        90 -~~~lavDw~~------~~lY~~d~~~~~I~v~~~dg~~~---~~l~~~-~~~~P~~iavd~~~g~lywtd~~~~~~I~~  158 (652)
                       |+|||+=--+      +.+|++......+.+.+++|..+   ..++.. .-.+|+++++.| .|.||++|-..+.+|.|
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-DGallv~~D~~~g~i~R  393 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-DGALLVLTDQGDGRILR  393 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC-CCeEEEeecCCCCeEEE
Confidence             2599985322      67888888888888899999843   333442 226999999998 78888887654668999


Q ss_pred             EeCCC
Q psy5768         159 AGLDG  163 (652)
Q Consensus       159 ~~ldg  163 (652)
                      ....+
T Consensus       394 v~~~~  398 (399)
T COG2133         394 VSYAG  398 (399)
T ss_pred             ecCCC
Confidence            87654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.01  E-value=0.021  Score=36.08  Aligned_cols=26  Identities=12%  Similarity=0.231  Sum_probs=23.4

Q ss_pred             CceeeeEEEccCCEEEEEeCCCCeEEE
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNNDATINK  382 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~~~~I~~  382 (652)
                      ..|.|||+| ..++||.+|..+++|.+
T Consensus         2 ~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    2 NYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            479999999 78999999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=95.96  E-value=0.0064  Score=42.67  Aligned_cols=37  Identities=30%  Similarity=0.535  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCc--cccccCCCCceeeeccCceeeccC-Ccc
Q psy5768         549 TPCRHLNGNCD--DICKLDETGQVVCSCFTGKVLMED-NRS  586 (652)
Q Consensus       549 ~~C~~~ng~Cs--~lCl~~~~~~~~C~Cp~g~~l~~d-~~C  586 (652)
                      +.|......|+  +.|+.+++ +|+|.|+.||.+..+ ++|
T Consensus         3 dEC~~~~~~C~~~~~C~N~~G-sy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    3 DECAEGPHNCPENGTCVNTEG-SYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             STTTTTSSSSSTTSEEEEETT-EEEEEESTTEEECTTSSEE
T ss_pred             cccCCCCCcCCCCCEEEcCCC-CEEeeCCCCcEECCCCCcC
Confidence            56766556675  67888776 699999999997666 554

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.91  E-value=1.1  Score=45.76  Aligned_cols=177  Identities=15%  Similarity=0.125  Sum_probs=108.3

Q ss_pred             ceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc--cEEEE---EeCCCCCceEEEEeCCCCEEEEEecCCC-CCceEE
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ--RIVVV---RLGQHDKPRGIDIDSCDSRIYWTNWNSH-LPSIQR  430 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~--~~~~~---~~~~~~~P~~Iavdp~~g~Lywtd~~~~-~~~I~r  430 (652)
                      .+..||+  ..+.|++.+..-.-+-.++-.-+-..  ....+   .-++--+-.|+|+.- ..--|+|.-+.. .+.=+|
T Consensus       104 diHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR  180 (335)
T TIGR03032       104 DAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWR  180 (335)
T ss_pred             chhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccc
Confidence            5677777  57788888877666665554322110  00111   112334667888875 445677765432 122233


Q ss_pred             Eeec-C------CCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEE
Q psy5768         431 AFFS-G------FGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIF  503 (652)
Q Consensus       431 ~~ld-G------~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lY  503 (652)
                      -... |      ..-++ +.+++..|.+-..-  +++||+.|.+.+.+.++|.+....+.+..-. ..|.||++.++++|
T Consensus       181 ~~~~~gG~vidv~s~ev-l~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp-G~~rGL~f~G~llv  256 (335)
T TIGR03032       181 EGRRDGGCVIDIPSGEV-VASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP-GFTRGLAFAGDFAF  256 (335)
T ss_pred             ccccCCeEEEEeCCCCE-EEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC-CCCcccceeCCEEE
Confidence            3221 1      11122 23466677766665  7999999999999999999844444554433 68999999999999


Q ss_pred             EEcCCCC-------------------eEEEEEccCCceEEEEec--ccCCcceeEEEe
Q psy5768         504 WTDWVIH-------------------AVLRANKYTGEEVYTLRK--NIRRPMGIVAIS  540 (652)
Q Consensus       504 wtd~~~~-------------------~I~~~~k~~g~~~~~~~~--~~~~p~~i~~~~  540 (652)
                      +.=.+.+                   .|+.+|..+|..+..+..  .+...+++.+..
T Consensus       257 VgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP  314 (335)
T TIGR03032       257 VGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP  314 (335)
T ss_pred             EEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence            8754332                   266778888887766553  235667776663

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=95.63  E-value=0.024  Score=35.80  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             CcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          91 LHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        91 ~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      .|||+| ..++||++|...++|.++
T Consensus         5 ~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    5 HGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             cEEEEe-CCCCEEEEECCCCEEEEC
Confidence            399999 699999999999999864

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.31  E-value=0.57  Score=49.65  Aligned_cols=130  Identities=17%  Similarity=0.268  Sum_probs=90.3

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      .++.+..++.+-+++.+|..+.++..       .+.++.+|.+++..+++..++   ....|+.++++..+.+.+=... 
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e~-------~lg~I~av~vs~dGK~~vvaN---dr~el~vididngnv~~idkS~-  442 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIEK-------DLGNIEAVKVSPDGKKVVVAN---DRFELWVIDIDNGNVRLIDKSE-  442 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEeeC-------CccceEEEEEcCCCcEEEEEc---CceEEEEEEecCCCeeEecccc-
Confidence            46778888999999999998888876       688999999999888888877   6778999999877655553222 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeC-----CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEec
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDP-----KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES  150 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~-----~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~  150 (652)
                      .+...    ++  +|--+-=+++.+     -++.|...+.+|....-+ .+....-.+-|.||...|||+-..
T Consensus       443 ~~lIt----df--~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         443 YGLIT----DF--DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cceeE----EE--EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEec
Confidence            33344    33  333332223332     356788999988533222 222344457789999999999753

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.28  E-value=1.6  Score=44.63  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=59.7

Q ss_pred             CeEEEecCCCCeEEEEecC--CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEE----------
Q psy5768           1 MFIAVSSPTQSKIVVCNLE--GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF----------   68 (652)
Q Consensus         1 ~~i~v~~~~~~~I~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~----------   68 (652)
                      +.++++++..++++++..+  |. ...+..       .+.++.|++.+  .++||.+-    ..+|.+..          
T Consensus        18 ~Sla~sTYQagkL~~ig~~~~g~-l~~~~r-------~F~r~MGl~~~--~~~l~~~t----~~qiw~f~~~~n~l~~~~   83 (335)
T TIGR03032        18 LSLAVTTYQAGKLFFIGLQPNGE-LDVFER-------TFPRPMGLAVS--PQSLTLGT----RYQLWRFANVDNLLPAGQ   83 (335)
T ss_pred             eEEEEEeeecceEEEEEeCCCCc-EEEEee-------ccCccceeeee--CCeEEEEE----cceeEEcccccccccccc
Confidence            3689999999999998655  43 333332       57899999885  68999876    34666651          


Q ss_pred             cCCC------ccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc
Q psy5768          69 MDGT------KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY  121 (652)
Q Consensus        69 ~dgs------~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~  121 (652)
                      ..+.      .+...+ +|++. .-    .||+  ..+.++++++....+...+.+-++
T Consensus        84 ~~~~~D~~yvPr~~~~-TGdid-iH----dia~--~~~~l~fVNT~fSCLatl~~~~SF  134 (335)
T TIGR03032        84 THPGYDRLYVPRASYV-TGDID-AH----DLAL--GAGRLLFVNTLFSCLATVSPDYSF  134 (335)
T ss_pred             cCCCCCeEEeeeeeee-ccCcc-hh----heee--cCCcEEEEECcceeEEEECCCCcc
Confidence            1121      122222 22122 12    5666  466788877766666655554443

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.24  E-value=0.017  Score=39.46  Aligned_cols=36  Identities=28%  Similarity=0.744  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCcc--cceecCCCceEEEeCCccccCCCccc
Q psy5768         237 TNPCGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       237 ~n~C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .++|... ..|.+  .|+...++|.|.|+.||.  +|+.|.
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~--~g~~C~   39 (39)
T smart00179        2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT--DGRNCE   39 (39)
T ss_pred             cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc--cCCcCC
Confidence            4677653 46776  899877789999999986  676663

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=95.08  E-value=0.02  Score=37.14  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=22.0

Q ss_pred             CCCCccccccCCCCceeeeccCceeeccCC
Q psy5768         555 NGNCDDICKLDETGQVVCSCFTGKVLMEDN  584 (652)
Q Consensus       555 ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~  584 (652)
                      ...|+..|-|...  ..|.||+||.|.++.
T Consensus         5 ~t~CpA~CDpn~~--~~C~CPeGyIlde~~   32 (34)
T PF09064_consen    5 QTECPADCDPNSP--GQCFCPEGYILDEGS   32 (34)
T ss_pred             cccCCCccCCCCC--CceeCCCceEecCCc
Confidence            3568888987654  589999999997663

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=94.99  E-value=0.014  Score=57.74  Aligned_cols=39  Identities=26%  Similarity=0.603  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKS  273 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~  273 (652)
                      .+.++|...+..|.|.|...+++|.|.|+.|| +.+|+++
T Consensus       185 ~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~  224 (224)
T cd01475         185 VVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT  224 (224)
T ss_pred             cCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence            36789988888999999998889999999998 5567653

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=5  Score=40.46  Aligned_cols=221  Identities=14%  Similarity=0.242  Sum_probs=118.4

Q ss_pred             cceEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeecc
Q psy5768         277 YDAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ  355 (652)
Q Consensus       277 ~~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~  355 (652)
                      .+++.+++. ...++-+++.++..   |. ++.. -.. .-.+--++...+..|++|...+ +..+++......++....
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~s---P~-~~~~-lnt-~gyaygv~vsGn~aYVadlddg-fLivdvsdpssP~lagry  167 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDS---PT-LIGF-LNT-DGYAYGVYVSGNYAYVADLDDG-FLIVDVSDPSSPQLAGRY  167 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCC---cc-eecc-ccC-CceEEEEEecCCEEEEeeccCc-EEEEECCCCCCceeeeee
Confidence            456777765 44566666644433   21 1111 001 0123334566788999998544 444555443334444222


Q ss_pred             ----CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEE
Q psy5768         356 ----GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRA  431 (652)
Q Consensus       356 ----~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~  431 (652)
                          ...+.+|+.  ++.-|.+....+ +..+++....  ..+++. ...-.|..-.+.+...+.|.++.++   .+.-.
T Consensus       168 a~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~--sPvli~-~~n~g~g~~sv~vsdnr~y~vvy~e---gvliv  238 (370)
T COG5276         168 ALPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPH--SPVLIG-SYNTGPGTYSVSVSDNRAYLVVYDE---GVLIV  238 (370)
T ss_pred             ccCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCCC--CCeEEE-EEecCCceEEEEecCCeeEEEEccc---ceEEE
Confidence                233567775  788888876543 5667776543  222332 2222333333444457788888764   34445


Q ss_pred             eecCCCceEEEE-cCCCCCceE-EEecCCCEEEEEeCCCCeEEEEecCCCceEEEec---CCCCceeEEEEeCCEEEEEc
Q psy5768         432 FFSGFGTESIIT-TDITMPNAL-ALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK---ISPLHPFDMAVYGEFIFWTD  506 (652)
Q Consensus       432 ~ldG~~~~~l~~-~~l~~P~gl-aiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~---~~~~~p~glav~~~~lYwtd  506 (652)
                      ..+|...-.++. -+-..|.++ ++-..+++.|.+|...+ +-.++..-..-..+..   ....+-.||.++++++|.+|
T Consensus       239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiad  317 (370)
T COG5276         239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIAD  317 (370)
T ss_pred             ecCCCCCceEeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEEecCeeEecc
Confidence            555554334442 233445544 33345899999986433 2223333222122222   11236789999999999999


Q ss_pred             CCCCeEEE
Q psy5768         507 WVIHAVLR  514 (652)
Q Consensus       507 ~~~~~I~~  514 (652)
                      ..++.|.-
T Consensus       318 kn~g~vV~  325 (370)
T COG5276         318 KNTGAVVD  325 (370)
T ss_pred             CCceEEEe
Confidence            88877643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.40  E-value=3  Score=43.74  Aligned_cols=111  Identities=16%  Similarity=0.276  Sum_probs=68.5

Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCe------EEEEEcCCCCCc--c-----EEEEEeCC-------CCCceEEEEeCCC
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDAT------INKIDLDSPKAQ--R-----IVVVRLGQ-------HDKPRGIDIDSCD  413 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~------I~~~~~~~~~~~--~-----~~~~~~~~-------~~~P~~Iavdp~~  413 (652)
                      .++...||++|. ....||+-+..+.      +....+....+.  .     ...+....       ...+.+|++ +..
T Consensus        18 ~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~   95 (326)
T PF13449_consen   18 PFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD   95 (326)
T ss_pred             ccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence            445678888886 3445666555555      665555431111  1     11111111       126679999 678


Q ss_pred             CEEEEEecCCC----CCceEEEeecCCCceEE-EEcCC---------CC----CceEEEecCCCEEEEEeC
Q psy5768         414 SRIYWTNWNSH----LPSIQRAFFSGFGTESI-ITTDI---------TM----PNALALDHQAEKLFWGDA  466 (652)
Q Consensus       414 g~Lywtd~~~~----~~~I~r~~ldG~~~~~l-~~~~l---------~~----P~glaiD~~~~~LYw~D~  466 (652)
                      |.+||++.+..    .|.|.+..++|...+.+ +...+         ..    ..|||+.+++++||.+-.
T Consensus        96 g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   96 GSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             CCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            99999987741    16999999999886555 22221         11    338999999888998743

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.86  E-value=0.034  Score=37.75  Aligned_cols=20  Identities=45%  Similarity=1.047  Sum_probs=17.7

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ++|++++|+|.+++||+.++
T Consensus         1 ~~C~~~~f~C~~~~CI~~~~   20 (37)
T PF00057_consen    1 PTCPPGEFRCGNGQCIPKSW   20 (37)
T ss_dssp             SSSSTTEEEETTSSEEEGGG
T ss_pred             CcCcCCeeEcCCCCEEChHH
Confidence            36899999999999999865

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.85  E-value=5.7  Score=42.06  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             CeEEEeecc-cccEEEEeccCCcceEEeecc-CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCC
Q psy5768         326 KTLFYSDIQ-KGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDK  403 (652)
Q Consensus       326 ~~lywsd~~-~~~I~~~~~~g~~~~~i~~~~-~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~  403 (652)
                      +.||.+|.. ...++.++++....+.+..+- ....|..+-..++.||+.... .++.++++..++  .+.+......-.
T Consensus        49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e--~~~vy~~p~~~~  125 (386)
T PF14583_consen   49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLE--ERVVYEVPDDWK  125 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT----EEEEEE--TTEE
T ss_pred             EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCc--EEEEEECCcccc
Confidence            345555543 346888888876666665322 223466677889999876533 578999998764  345555444433


Q ss_pred             ceEEEE-eCCCCEEEEE------------ecC--------CCCCceEEEeecCCCceEEEEcCCCCCceEEEecCC-CEE
Q psy5768         404 PRGIDI-DSCDSRIYWT------------NWN--------SHLPSIQRAFFSGFGTESIITTDITMPNALALDHQA-EKL  461 (652)
Q Consensus       404 P~~Iav-dp~~g~Lywt------------d~~--------~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~-~~L  461 (652)
                      ..+-.+ +. .+.++..            +|.        ....+|.++.+.+..++++..++ .|-.-+-..+.. ..|
T Consensus       126 g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li  203 (386)
T PF14583_consen  126 GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLI  203 (386)
T ss_dssp             EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEE
T ss_pred             cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEE
Confidence            333333 43 3333322            111        11237999999998888888765 344444444332 344


Q ss_pred             EEEeC-----CCCeEEEEecCCCceEEEecC
Q psy5768         462 FWGDA-----RLDKIERCDYDGTNRIVLSKI  487 (652)
Q Consensus       462 Yw~D~-----~~~~I~~~~ldG~~~~~l~~~  487 (652)
                      -++-.     -..+|+.++.||++.+.+...
T Consensus       204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~  234 (386)
T PF14583_consen  204 MFCHEGPWDLVDQRIWTINTDGSNVKKVHRR  234 (386)
T ss_dssp             EEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred             EEeccCCcceeceEEEEEEcCCCcceeeecC
Confidence            44432     234899999999998877553

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.58  E-value=3.2  Score=46.59  Aligned_cols=147  Identities=13%  Similarity=0.119  Sum_probs=87.7

Q ss_pred             ceeeeEEEccCCEEEEEeC---CCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         357 SVEGLAYEYVHNYLYWTCN---NDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~---~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      +|.++++++.++.+|+|..   ....+..++...    +..++..   ..++.-++-+...+.|+.  + +  ++  .-+
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e----~d~~vvf---ni~~iea~vkdGK~~~V~--g-n--~V--~VI  301 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE----RDWVVVF---NIARIEEAVKAGKFKTIG--G-S--KV--PVV  301 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeecccc----CceEEEE---chHHHHHhhhCCCEEEEC--C-C--EE--EEE
Confidence            8899999999999999963   223444444321    1111111   111111222334455552  1 1  33  234


Q ss_pred             cCCC-----ceEEEEc-CCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCc---------eEEEecC-C-CCceeEEE
Q psy5768         434 SGFG-----TESIITT-DITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN---------RIVLSKI-S-PLHPFDMA  496 (652)
Q Consensus       434 dG~~-----~~~l~~~-~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~---------~~~l~~~-~-~~~p~gla  496 (652)
                      |+..     ..++... .-..|.|++++++++++|.+....+.+..+|+.-..         +.+++.. . ...|...+
T Consensus       302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTa  381 (635)
T PRK02888        302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTA  381 (635)
T ss_pred             ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEE
Confidence            4544     3333222 235899999999999999999888999999987532         2333222 1 36798999


Q ss_pred             EeCC-EEEEEcCCCCeEEEEEc
Q psy5768         497 VYGE-FIFWTDWVIHAVLRANK  517 (652)
Q Consensus       497 v~~~-~lYwtd~~~~~I~~~~k  517 (652)
                      ++++ +.|.|=.-...|.+-|.
T Consensus       382 FDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        382 FDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ECCCCCEEEeEeecceeEEEeh
Confidence            9854 88888766666666553

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.55  E-value=0.047  Score=54.03  Aligned_cols=35  Identities=29%  Similarity=0.700  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceeeccC
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED  583 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d  583 (652)
                      .++|...+..|.|.|...++ +|.|.|+.||.+..|
T Consensus       187 ~~~C~~~~~~c~~~C~~~~g-~~~c~c~~g~~~~~~  221 (224)
T cd01475         187 PDLCATLSHVCQQVCISTPG-SYLCACTEGYALLED  221 (224)
T ss_pred             chhhcCCCCCccceEEcCCC-CEEeECCCCccCCCC
Confidence            47888778889999997665 699999999999877

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG0291|consensus

Probab=93.41  E-value=11  Score=42.82  Aligned_cols=179  Identities=13%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC-CCccEEEEeCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD-GTKRETVVSQK   81 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d-gs~~~~v~~~~   81 (652)
                      .+++--..++|.++|....++..-.+.      ..+..+++.|. ..+++.++-  .-.+++.-+++. ..+.+++....
T Consensus       364 ~iaTG~eDgKVKvWn~~SgfC~vTFte------Hts~Vt~v~f~-~~g~~llss--SLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  364 LIATGAEDGKVKVWNTQSGFCFVTFTE------HTSGVTAVQFT-ARGNVLLSS--SLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EEEeccCCCcEEEEeccCceEEEEecc------CCCceEEEEEE-ecCCEEEEe--ecCCeEEeeeecccceeeeecCCC


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       --.-.    .+|+|..+..+...+...=.|.+-+.......-++++--....+|.++|.+..|+=..|...-+||-..-
T Consensus       435 -p~Qfs----cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  435 -PIQFS----CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             -ceeee----EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      ......++-...  ...++++-+.+..|-+..++|.
T Consensus       510 s~~~vEtl~i~s--dvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  510 SSGTVETLEIRS--DVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             cCceeeeEeecc--ceeEEEEcCCCCeEEEEEecce

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.40  E-value=9.5  Score=38.30  Aligned_cols=159  Identities=18%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             ceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      -..||.++ -.+.||-+....+  +|.++++...+  ......+....--.||++.  +..||---|.+.  .....+.+
T Consensus        46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~--~~f~yd~~  118 (264)
T PF05096_consen   46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEG--TGFVYDPN  118 (264)
T ss_dssp             EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TTT--EEEEEEE--TTEEEEEESSSS--EEEEEETT
T ss_pred             cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCccccceeEEEE--CCEEEEEEecCC--eEEEEccc
Confidence            35788885 2678998887665  68888876532  2333344555566789888  478999889764  55555554


Q ss_pred             CCCceEEEEcC-CCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC-ceEEE-ecCC---CCceeEEEEeCCEEEEEcCC
Q psy5768         435 GFGTESIITTD-ITMPNALALDHQAEKLFWGDARLDKIERCDYDGT-NRIVL-SKIS---PLHPFDMAVYGEFIFWTDWV  508 (652)
Q Consensus       435 G~~~~~l~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~-~~~~l-~~~~---~~~p~glav~~~~lYwtd~~  508 (652)
                      .  -+.+-+-. ....-||+-|  +++||.+|. +++|...|...- ..+.+ +...   +..---|...+++||---|.
T Consensus       119 t--l~~~~~~~y~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~  193 (264)
T PF05096_consen  119 T--LKKIGTFPYPGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQ  193 (264)
T ss_dssp             T--TEEEEEEE-SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETT
T ss_pred             c--ceEEEEEecCCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCC
Confidence            3  22222211 1233488866  778888885 678888886542 22222 1111   23344577889999999999


Q ss_pred             CCeEEEEEccCCceEEEEe
Q psy5768         509 IHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       509 ~~~I~~~~k~~g~~~~~~~  527 (652)
                      ++.|.++|+.+|.....+.
T Consensus       194 td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEEE
Confidence            9999999999999877664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=93.32  E-value=9.1  Score=37.80  Aligned_cols=172  Identities=17%  Similarity=0.236  Sum_probs=93.9

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCC-CCCCCCCCe---eEEEEECCCCEEEEEeccCCcceEEEEEcCCCc--cEE
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNES-NDTSTLSKI---SSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK--RET   76 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~~~~---~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~--~~~   76 (652)
                      .++++-.....+++|+.|+.+..+.+-.- +...+-..+   .+|++-..      +|  +.+.+|..+..|+..  .+.
T Consensus        69 ~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaA------Sd--R~~~~i~~y~Idp~~~~L~s  140 (364)
T COG4247          69 LVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAA------SD--RQNDKIVFYKIDPNPQYLES  140 (364)
T ss_pred             eEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEec------cc--ccCCeEEEEEeCCCccceee
Confidence            45666677889999999998766543210 000000000   11222111      44  445666665555542  233


Q ss_pred             E------EeCCCcCCccCCCCcEEE--EccCCcEEE-EeCCCCEEEEEEc----CCCcEEEEEeC--CCCCceeEEEcCC
Q psy5768          77 V------VSQKKYPAVTACNLHIAV--DWIAQNIYW-SDPKENVIEVARL----TGQYRYVLISG--GVDQPSALAVDPE  141 (652)
Q Consensus        77 v------~~~~~~~~p~~~~~~lav--Dw~~~~lY~-~d~~~~~I~v~~~----dg~~~~~l~~~--~~~~P~~iavd~~  141 (652)
                      |      ++.+ +..+-    |+++  +..++-.|+ .....+.|....+    +|+.+.-++..  .-.+-.+++.|-.
T Consensus       141 itD~n~p~ss~-~s~~Y----Gl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdE  215 (364)
T COG4247         141 ITDSNAPYSSS-SSSAY----GLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDE  215 (364)
T ss_pred             ccCCCCccccC-cccce----eeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccc
Confidence            2      2334 55566    8888  677776764 3334566666554    33333222222  1235669999999


Q ss_pred             CCeEEEEecCCCCeEEEEeCC---CCCcEEEEeecccCceeEEEeccCCEEEE
Q psy5768         142 SGYLFWSESGKIPLIARAGLD---GKKQTILAQEIIMPIKDITLDLKFFSAFY  191 (652)
Q Consensus       142 ~g~lywtd~~~~~~I~~~~ld---g~~~~~~~~~~~~~p~gl~lD~~~~~ly~  191 (652)
                      .|.||..+-  .-.||+...+   |...+. +.. +.....|+-|.++-.||+
T Consensus       216 tG~LYIaeE--dvaiWK~~Aep~~G~~g~~-idr-~~d~~~LtdDvEGltiYy  264 (364)
T COG4247         216 TGFLYIAEE--DVAIWKYEAEPNRGNTGRL-IDR-IKDLSYLTDDVEGLTIYY  264 (364)
T ss_pred             cceEEEeec--cceeeecccCCCCCCccch-hhh-hcCchhhcccccccEEEE
Confidence            999999974  4578887654   332222 222 122245677777777777

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.23  E-value=8.4  Score=41.95  Aligned_cols=178  Identities=17%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             cEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCccEEEEEeCCCCCceEE----EEe
Q psy5768         337 TINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQRIVVVRLGQHDKPRGI----DID  410 (652)
Q Consensus       337 ~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~~~~~~~~~~~~~P~~I----avd  410 (652)
                      +|+..+++.+..+.+++-.+.-..-++-+.+++|-++....+  .|.++++++..  ...      +.+..++    .+.
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~------Lt~~~gi~~~Ps~s  290 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LPR------LTNGFGINTSPSWS  290 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--cee------cccCCccccCccCC
Confidence            466666666666666643333344566666788877765444  58888887643  111      2222333    345


Q ss_pred             CCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe--EEEEecCCCc-eEEEecC
Q psy5768         411 SCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDK--IERCDYDGTN-RIVLSKI  487 (652)
Q Consensus       411 p~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~--I~~~~ldG~~-~~~l~~~  487 (652)
                      |...+|+++.-....|.|++++++|...+.+.. ......--.+.+++++|-+.....+.  |...++.... -+.+...
T Consensus       291 pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~  369 (425)
T COG0823         291 PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST  369 (425)
T ss_pred             CCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc
Confidence            666777766433345799999999998855543 33333334455556666666533233  4444443222 3333332


Q ss_pred             CCCceeEEEEeCCEE-EEEcCCCCeEEEEEccCCceE
Q psy5768         488 SPLHPFDMAVYGEFI-FWTDWVIHAVLRANKYTGEEV  523 (652)
Q Consensus       488 ~~~~p~glav~~~~l-Ywtd~~~~~I~~~~k~~g~~~  523 (652)
                      ....+-..+..+..| |.+.+..+.+...-..+|...
T Consensus       370 ~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~  406 (425)
T COG0823         370 YLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVS  406 (425)
T ss_pred             ccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeE
Confidence            333444455555544 444444444443333344433

>smart00181 EGF Epidermal growth factor-like domain

Probab=92.88  E-value=0.098  Score=34.71  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             CCCcc-ccccCCCCceeeeccCceeec
Q psy5768         556 GNCDD-ICKLDETGQVVCSCFTGKVLM  581 (652)
Q Consensus       556 g~Cs~-lCl~~~~~~~~C~Cp~g~~l~  581 (652)
                      ..|.+ .|+..++ +++|.|+.||.+.
T Consensus         6 ~~C~~~~C~~~~~-~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPG-SYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCC-CeEeECCCCCccC
Confidence            45766 8997754 7999999999874

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=92.81  E-value=0.021  Score=52.89  Aligned_cols=81  Identities=23%  Similarity=0.477  Sum_probs=49.6

Q ss_pred             CCCceeeeccCceeeccCCcccCcccccCC--C-ceeecc-CeecCCcc---CCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q psy5768         566 ETGQVVCSCFTGKVLMEDNRSCTINTVCSE--H-DFKCSD-GMCIPFNQ---TCDRVYNCHDKSDEGILYCAMRDCRPGY  638 (652)
Q Consensus       566 ~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~--~-~f~C~~-g~Ci~~~~---~Cd~~~dC~d~sde~~~~C~~~~C~~~~  638 (652)
                      .++.+.|.|.+||+|.+..+|.+ ...|..  + .-.|++ +.|+....   .=....+|..|..-....|-...|..  
T Consensus        16 MSNHfEC~Cnegfvl~~EntCE~-kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vCvp~~C~~--   92 (197)
T PF06247_consen   16 MSNHFECKCNEGFVLKNENTCEE-KVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVCVPNKCNN--   92 (197)
T ss_dssp             ESSEEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSEEEGGGSS--
T ss_pred             ccCceEEEcCCCcEEcccccccc-ceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCeEchhhcCc--
Confidence            45589999999999987789987 456754  1 345876 67885431   11122268888776666776667754  


Q ss_pred             eecCCCCcccC
Q psy5768         639 FKCDNNKCILS  649 (652)
Q Consensus       639 f~C~~~~Ci~~  649 (652)
                      +.|.+|+||-.
T Consensus        93 ~~Cg~GKCI~d  103 (197)
T PF06247_consen   93 KDCGSGKCILD  103 (197)
T ss_dssp             ---TTEEEEEE
T ss_pred             eecCCCeEEec
Confidence            67888999853

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=92.69  E-value=0.054  Score=36.26  Aligned_cols=18  Identities=50%  Similarity=1.119  Sum_probs=15.9

Q ss_pred             CCCCeeecCCCCcccCCC
Q psy5768         634 CRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       634 C~~~~f~C~~~~Ci~~~~  651 (652)
                      |++++|+|.+++||+.++
T Consensus         1 C~~~~f~C~~~~Ci~~~~   18 (35)
T cd00112           1 CPPNEFRCANGRCIPSSW   18 (35)
T ss_pred             CCCCeEEcCCCCeeCHHH
Confidence            678999999999999765

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.62  E-value=5.9  Score=44.33  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=45.2

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCC-------------------EEEEEEcCCC-------c-EEEEEeC-------
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKEN-------------------VIEVARLTGQ-------Y-RYVLISG-------  128 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~-------------------~I~v~~~dg~-------~-~~~l~~~-------  128 (652)
                      +.+|+    ++++++.++.||++-+...                   +|.+..+++.       . ...+..+       
T Consensus       349 f~RpE----gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~  424 (524)
T PF05787_consen  349 FDRPE----GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG  424 (524)
T ss_pred             ccCcc----CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc
Confidence            78899    9999999999999865433                   7988887764       1 1222222       


Q ss_pred             ---------CCCCceeEEEcCCCCeEEEEe
Q psy5768         129 ---------GVDQPSALAVDPESGYLFWSE  149 (652)
Q Consensus       129 ---------~~~~P~~iavd~~~g~lywtd  149 (652)
                               .+..|..|++|| .|.|+..+
T Consensus       425 ~~~~~~~~~~f~sPDNL~~d~-~G~LwI~e  453 (524)
T PF05787_consen  425 NGSNKCDDNGFASPDNLAFDP-DGNLWIQE  453 (524)
T ss_pred             cccCcccCCCcCCCCceEECC-CCCEEEEe
Confidence                     367899999999 56666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=92.62  E-value=15  Score=38.35  Aligned_cols=195  Identities=14%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             EcCCCeEEEeec-ccccEEEEeccCCcceEEeeccCcee-eeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc---cEEEE
Q psy5768         322 DYKRKTLFYSDI-QKGTINSVFFNGSNHRVLLERQGSVE-GLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ---RIVVV  396 (652)
Q Consensus       322 D~~~~~lywsd~-~~~~I~~~~~~g~~~~~i~~~~~~~~-glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~---~~~~~  396 (652)
                      -..++.+|+.+. ...+|..+++....   ++..+..|. .+.+=+-.+..+ +--+.+++..+.++.. |.   +.+-+
T Consensus       103 s~dgk~~~V~N~TPa~SVtVVDl~~~k---vv~ei~~PGC~~iyP~~~~~F~-~lC~DGsl~~v~Ld~~-Gk~~~~~t~~  177 (342)
T PF06433_consen  103 SADGKFLYVQNFTPATSVTVVDLAAKK---VVGEIDTPGCWLIYPSGNRGFS-MLCGDGSLLTVTLDAD-GKEAQKSTKV  177 (342)
T ss_dssp             -TTSSEEEEEEESSSEEEEEEETTTTE---EEEEEEGTSEEEEEEEETTEEE-EEETTSCEEEEEETST-SSEEEEEEEE
T ss_pred             ccCCcEEEEEccCCCCeEEEEECCCCc---eeeeecCCCEEEEEecCCCceE-EEecCCceEEEEECCC-CCEeEeeccc
Confidence            344566676664 34567777766532   221221221 123444455544 4445677877777632 22   11111


Q ss_pred             EeCCCCCceE--EEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCC--------CC-Cc---eEEEecCCCEEE
Q psy5768         397 RLGQHDKPRG--IDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDI--------TM-PN---ALALDHQAEKLF  462 (652)
Q Consensus       397 ~~~~~~~P~~--Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l--------~~-P~---glaiD~~~~~LY  462 (652)
                       ......|.-  =+.....+.+||+...   +.|+.+.+.|...+..-...+        .| |-   -+|++...+|||
T Consensus       178 -F~~~~dp~f~~~~~~~~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  178 -FDPDDDPLFEHPAYSRDGGRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             -SSTTTS-B-S--EEETTTTEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             -cCCCCcccccccceECCCCeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence             122233321  1223346778887765   599999999987655543222        22 43   399999999999


Q ss_pred             EEeC----CC-----CeEEEEecCCCceEEEecCCCCcee-EEEEeCC---EEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         463 WGDA----RL-----DKIERCDYDGTNRIVLSKISPLHPF-DMAVYGE---FIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       463 w~D~----~~-----~~I~~~~ldG~~~~~l~~~~~~~p~-glav~~~---~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      +.=.    ++     ..|+.+|+....|..-+.  +.+|- +|++..+   .||-++...+.+...+..+|+.+..+.
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            8721    11     257888777665554443  34554 7888643   888888888899999999998877776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00181 EGF Epidermal growth factor-like domain

Probab=92.60  E-value=0.1  Score=34.63  Aligned_cols=29  Identities=28%  Similarity=0.757  Sum_probs=22.2

Q ss_pred             CCCCCCCCCcc-cceecCCCceEEEeCCccc
Q psy5768         239 PCGVNNGGCAE-LCLYNGVSAVCACAHGVVA  268 (652)
Q Consensus       239 ~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~l~  268 (652)
                      +|..+ ..|.+ .|+..+++|+|.|+.||..
T Consensus         1 ~C~~~-~~C~~~~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        1 ECASG-GPCSNGTCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCCc-CCCCCCEEECCCCCeEeECCCCCcc
Confidence            35443 56887 8998777999999999843

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.59  E-value=0.38  Score=39.52  Aligned_cols=42  Identities=12%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             cCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEec
Q psy5768         434 SGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY  476 (652)
Q Consensus       434 dG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l  476 (652)
                      ||+..++ +...+..||||++|+..+.||+++...+.|..+..
T Consensus        42 d~~~~~~-va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   42 DGKEVKV-VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eCCEeEE-eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3444333 44578899999999999999999998888877654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=91.77  E-value=0.1  Score=34.33  Aligned_cols=19  Identities=53%  Similarity=1.160  Sum_probs=16.1

Q ss_pred             CCCCCeeecCCCCcccCCC
Q psy5768         633 DCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~~~~Ci~~~~  651 (652)
                      .|+.++|+|.++.||+.++
T Consensus         1 ~C~~~~f~C~~~~Ci~~~~   19 (33)
T smart00192        1 TCPPGEFQCDNGRCIPLSW   19 (33)
T ss_pred             CCCCCeEECCCCCEECchh
Confidence            3777899999999999875

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.45  E-value=0.59  Score=38.37  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             CcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEc
Q psy5768         346 SNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL  385 (652)
Q Consensus       346 ~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~  385 (652)
                      +...++.+++..|.||++|..++.||.++...+.|.+...
T Consensus        44 ~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   44 KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3345566888999999999999999999999999988764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.14  E-value=13  Score=38.98  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             cceEEEEEEEcCCCeEEEe-eccc----ccEEEEeccCC-----cce-----EEee--c--c----CceeeeEEEccCCE
Q psy5768         313 MKNIIELSYDYKRKTLFYS-DIQK----GTINSVFFNGS-----NHR-----VLLE--R--Q----GSVEGLAYEYVHNY  369 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lyws-d~~~----~~I~~~~~~g~-----~~~-----~i~~--~--~----~~~~glAvDw~~~~  369 (652)
                      ++...|++|+...+++|.. |...    .++++..+...     ..+     .+..  +  +    -.++||++ ...+.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence            4566799999766654332 3322    23776665431     111     1111  1  1    17889999 67889


Q ss_pred             EEEEeCCC------CeEEEEEcCCCCCccEEE-EE------------eCCCCCceEEEEeCCCCEEEEEec
Q psy5768         370 LYWTCNND------ATINKIDLDSPKAQRIVV-VR------------LGQHDKPRGIDIDSCDSRIYWTNW  421 (652)
Q Consensus       370 LYwtd~~~------~~I~~~~~~~~~~~~~~~-~~------------~~~~~~P~~Iavdp~~g~Lywtd~  421 (652)
                      +||++...      ..|.+++.+|.-.  +.+ +-            .....-..+||+.|....||..-.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~--~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVI--RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCccc--ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            99999999      9999999876432  111 10            112345678999997666777643

>KOG0315|consensus

Probab=91.11  E-value=17  Score=35.89  Aligned_cols=173  Identities=13%  Similarity=0.069  Sum_probs=111.6

Q ss_pred             EEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEe-C
Q psy5768           3 IAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS-Q   80 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~-~   80 (652)
                      |+|+.....-|+.+-.. |.=.++|- .      +=+++-.+.+.|.++.|-.    ..+..|..++++..+...+.+ .
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiq-h------~dsqVNrLeiTpdk~~LAa----a~~qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQ-H------PDSQVNRLEITPDKKDLAA----AGNQHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEe-c------CccceeeEEEcCCcchhhh----ccCCeeEEEEccCCCCCceeEEe
Confidence            78888888899888655 54444444 3      2256777888876665543    356778888887654322221 1


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                      +....+.    .+.+-- .+++-++-+..+.+.+-++..-.+....+.. .....++++|..+.|+..|.  .+.|+.-+
T Consensus        81 ~h~kNVt----aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dq--sg~irvWD  152 (311)
T KOG0315|consen   81 GHTKNVT----AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQ--SGNIRVWD  152 (311)
T ss_pred             ccCCceE----EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecC--CCcEEEEE
Confidence            2134566    667764 4666677777888887787764444444332 45678999999999999984  45677766


Q ss_pred             CCCC-CcEEEEeecccCceeEEEeccCCEEEEEeC
Q psy5768         161 LDGK-KQTILAQEIIMPIKDITLDLKFFSAFYRNL  194 (652)
Q Consensus       161 ldg~-~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~  194 (652)
                      |-.. ....++.+.......|++++.+.+|--++-
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence            6433 344556666667788899887766644433

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=91.06  E-value=0.16  Score=33.23  Aligned_cols=29  Identities=28%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         547 AKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       547 ~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ..+||.. +|    .|+....++|+|.|+.||..
T Consensus         2 ~~~~C~n-~g----~C~~~~~~~y~C~C~~G~~G   30 (32)
T PF00008_consen    2 SSNPCQN-GG----TCIDLPGGGYTCECPPGYTG   30 (32)
T ss_dssp             TTTSSTT-TE----EEEEESTSEEEEEEBTTEES
T ss_pred             CCCcCCC-Ce----EEEeCCCCCEEeECCCCCcc
Confidence            3467763 23    56666645899999999864

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG0273|consensus

Probab=90.41  E-value=7.9  Score=41.33  Aligned_cols=125  Identities=16%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             EecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEc-CCCccEEEEeCCCc
Q psy5768           5 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFM-DGTKRETVVSQKKY   83 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~-dgs~~~~v~~~~~~   83 (652)
                      +.-.-++.++.++.+|....++.-++       ..+.+|-+.-++.+|.=.+   ..+++..++. .|+- .+.++   +
T Consensus       251 atG~~~G~~riw~~~G~l~~tl~~Hk-------gPI~slKWnk~G~yilS~~---vD~ttilwd~~~g~~-~q~f~---~  316 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGNLISTLGQHK-------GPIFSLKWNKKGTYILSGG---VDGTTILWDAHTGTV-KQQFE---F  316 (524)
T ss_pred             EEeecCcEEEEEecCchhhhhhhccC-------CceEEEEEcCCCCEEEecc---CCccEEEEeccCceE-EEeee---e
Confidence            33345678889999999888887654       4778888887777777554   3445544443 3443 33333   3


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEE
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS  148 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywt  148 (652)
                      +...    ++-|||+++.=|.+-...+.|.|+..+++.-..-+.+-.....+|.-|| .|.|.-|
T Consensus       317 ~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS  376 (524)
T KOG0273|consen  317 HSAP----ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLAS  376 (524)
T ss_pred             ccCC----ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEE
Confidence            4444    7899999999999988899999999988754333333346777888998 4555554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.32  E-value=1.2  Score=30.49  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             cCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEe
Q psy5768         366 VHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDID  410 (652)
Q Consensus       366 ~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavd  410 (652)
                      .++.||.++...++|.+++...    .+.+-.......|++|+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~----~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTAT----NKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCC----CeEEEEEECCCCCceEEeC
Confidence            4678999999999999998754    2333334456889999875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=89.43  E-value=3.2  Score=46.46  Aligned_cols=69  Identities=17%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCC-----------------cceEEEEEcCCC-------ccEEEEeCC----------
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQ-----------------VVTIEMAFMDGT-------KRETVVSQK----------   81 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~-----------------~~~I~~~~~dgs-------~~~~v~~~~----------   81 (652)
                      .+.+|.+|.++|.+++||++-....                 .+.|+|+.+++.       ..+.++..+          
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            5789999999999999999862222                 238999998865       334443322          


Q ss_pred             ------CcCCccCCCCcEEEEccCCcEEE-EeCCC
Q psy5768          82 ------KYPAVTACNLHIAVDWIAQNIYW-SDPKE  109 (652)
Q Consensus        82 ------~~~~p~~~~~~lavDw~~~~lY~-~d~~~  109 (652)
                            .+..|.    +|++|.. ++|++ +|...
T Consensus       428 ~~~~~~~f~sPD----NL~~d~~-G~LwI~eD~~~  457 (524)
T PF05787_consen  428 NKCDDNGFASPD----NLAFDPD-GNLWIQEDGGG  457 (524)
T ss_pred             CcccCCCcCCCC----ceEECCC-CCEEEEeCCCC
Confidence                  266789    9999984 55655 55443

>KOG0266|consensus

Probab=88.96  E-value=19  Score=39.68  Aligned_cols=130  Identities=16%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             EEEecCCCCeEEEEec-CC-CeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           3 IAVSSPTQSKIVVCNL-EG-EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      ++++......|.++++ +. ..+.++..+       ...+.+++|++.. .++.+=  ...+.|+.+++.+......+..
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH-------~~~v~~~~f~p~g-~~i~Sg--s~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGH-------STYVTSVAFSPDG-NLLVSG--SDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCC-------CCceEEEEecCCC-CEEEEe--cCCCcEEEEeccCCeEEEeeec
Confidence            5677778889999999 44 455666653       2577999999998 555555  5778999999886443444455


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcE--EEEEeCCCCCc---eeEEEcCCCCeEEEEec
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYR--YVLISGGVDQP---SALAVDPESGYLFWSES  150 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~--~~l~~~~~~~P---~~iavd~~~g~lywtd~  150 (652)
                      . .....    ++++.. .++++++-+..+.|.+-|..+...  ...+.. ...|   +.+..+|. |...|+-+
T Consensus       287 h-s~~is----~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~-~~~ll~~~  353 (456)
T KOG0266|consen  287 H-SDGIS----GLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPN-GKYLLSAS  353 (456)
T ss_pred             c-CCceE----EEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCC-CcEEEEec
Confidence            4 55677    888986 556666667788999999887662  222322 2344   67777774 44445543

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=88.74  E-value=0.38  Score=31.54  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=18.7

Q ss_pred             CCCc--ccceecCCCceEEEeCCccc
Q psy5768         245 GGCA--ELCLYNGVSAVCACAHGVVA  268 (652)
Q Consensus       245 g~Cs--~lC~~~~~~~~C~C~~G~l~  268 (652)
                      ..|.  +.|...+.+|+|.|+.||..
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g   31 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTG   31 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCcc
Confidence            4555  67887777899999999854

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=88.62  E-value=0.24  Score=33.33  Aligned_cols=29  Identities=28%  Similarity=0.614  Sum_probs=20.7

Q ss_pred             CCCCCCCCcc--ccccCCCCceeeeccCceee
Q psy5768         551 CRHLNGNCDD--ICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       551 C~~~ng~Cs~--lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      |..+|++|+.  .|...+. +++|.|..||..
T Consensus         1 C~~~~~~C~~nA~C~~~~~-~~~C~C~~Gy~G   31 (36)
T PF12947_consen    1 CLENNGGCHPNATCTNTGG-SYTCTCKPGYEG   31 (36)
T ss_dssp             TTTGGGGS-TTCEEEE-TT-SEEEEE-CEEEC
T ss_pred             CCCCCCCCCCCcEeecCCC-CEEeECCCCCcc
Confidence            5667788853  4888877 799999999976

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=88.58  E-value=0.46  Score=32.11  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=16.8

Q ss_pred             CCcc--ccccCCCCceeeeccCcee
Q psy5768         557 NCDD--ICKLDETGQVVCSCFTGKV  579 (652)
Q Consensus       557 ~Cs~--lCl~~~~~~~~C~Cp~g~~  579 (652)
                      .|.+  .|+..++ +++|.|+.||.
T Consensus        10 ~C~~~~~C~~~~g-~~~C~C~~g~~   33 (39)
T smart00179       10 PCQNGGTCVNTVG-SYRCECPPGYT   33 (39)
T ss_pred             CcCCCCEeECCCC-CeEeECCCCCc
Confidence            3544  7886665 59999999987

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=88.09  E-value=27  Score=34.03  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=43.3

Q ss_pred             CCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeE-EEEeCCEEEEEcCCCCeEEEEEccCCce
Q psy5768         458 AEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFD-MAVYGEFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       458 ~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~g-lav~~~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      ++++|.+..... +..+++....+.. .. ....+.+ ....++.||..+ ..+.|+.++..+|+.
T Consensus       173 ~~~v~~~~~~g~-~~~~d~~tg~~~w-~~-~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  173 DGRVYVSSGDGR-VVAVDLATGEKLW-SK-PISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEECCTSS-EEEEETTTTEEEE-EE-CSS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCe-EEEEECCCCCEEE-Ee-cCCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence            569999876554 4555777666442 22 2455666 667789999999 789999999999874

...

>KOG0285|consensus

Probab=87.76  E-value=37  Score=35.24  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      .+++.+-.+++|+. +.-|.+-.....|.-.++........+ .-+..++|+||....-.||-+ ...+.|.--+|... 
T Consensus       149 gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~-gedk~VKCwDLe~n-  225 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA-GEDKQVKCWDLEYN-  225 (460)
T ss_pred             hccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe-cCCCeeEEEechhh-
Confidence            45678889999998 456667777788888887765444444 356789999999877777654 33455655565431 


Q ss_pred             CccEEEEE--eCCCCCceEEEEeCCCCEEEE
Q psy5768         390 AQRIVVVR--LGQHDKPRGIDIDSCDSRIYW  418 (652)
Q Consensus       390 ~~~~~~~~--~~~~~~P~~Iavdp~~g~Lyw  418 (652)
                          .++.  .+.+...+.++++|.-..|+-
T Consensus       226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVT  252 (460)
T ss_pred             ----hhHHHhccccceeEEEeccccceeEEe
Confidence                1111  134556677888887666654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.75  E-value=2.4  Score=28.98  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             CCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEE
Q psy5768         457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAV  497 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav  497 (652)
                      .+++||.++...+.|..+|........-+.. ..+|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            4789999999999999999865443333333 378988875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=87.69  E-value=15  Score=40.01  Aligned_cols=144  Identities=14%  Similarity=0.131  Sum_probs=84.0

Q ss_pred             CCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC-CcCCcc
Q psy5768           9 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAVT   87 (652)
Q Consensus         9 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~-~~~~p~   87 (652)
                      .+-.|+++|+.++....+-...+    .-..|.   +.|.+.+|+++.-+.+...|++++++|+..+.+...+ ....|.
T Consensus       260 g~~~iy~~dl~~~~~~~Lt~~~g----i~~~Ps---~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~  332 (425)
T COG0823         260 GSPDIYLMDLDGKNLPRLTNGFG----INTSPS---WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPV  332 (425)
T ss_pred             CCccEEEEcCCCCcceecccCCc----cccCcc---CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCcc
Confidence            45788999999998766443222    112444   8888999888663445678999999999866654433 011222


Q ss_pred             CCCCcEEEEccCCcEEEEeCCCCE--EEEEEcCC-CcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCC
Q psy5768          88 ACNLHIAVDWIAQNIYWSDPKENV--IEVARLTG-QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK  164 (652)
Q Consensus        88 ~~~~~lavDw~~~~lY~~d~~~~~--I~v~~~dg-~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~  164 (652)
                             +..-++.|-+.....+.  |...++.. ...+.+-......+...+.+- ...||.+..+..+.+.-..++|.
T Consensus       333 -------~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng-~~i~~~s~~~~~~~l~~~s~~g~  404 (425)
T COG0823         333 -------WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG-RMIMFSSGQGGGSVLSLVSLDGR  404 (425)
T ss_pred             -------CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC-ceEEEeccCCCCceEEEeeccce
Confidence                   12223444444322333  55555532 224555555566677777764 45666666554556666666666


Q ss_pred             CcE
Q psy5768         165 KQT  167 (652)
Q Consensus       165 ~~~  167 (652)
                      ...
T Consensus       405 ~~~  407 (425)
T COG0823         405 VSR  407 (425)
T ss_pred             eEE
Confidence            554

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.40  E-value=36  Score=34.61  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=103.9

Q ss_pred             EEEEcCCCeEEEeecccccEEEEeccCCcceEEeec--c-CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEE
Q psy5768         319 LSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLER--Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV  395 (652)
Q Consensus       319 v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~--~-~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~  395 (652)
                      .|.-..++++|++|..++ +.-+++..-...++...  . +-..++++  -++.+|.+|-..+ ...+++..+..  ..+
T Consensus        90 ~Dv~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddg-fLivdvsdpss--P~l  163 (370)
T COG5276          90 ADVRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG-FLIVDVSDPSS--PQL  163 (370)
T ss_pred             heeEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCc-EEEEECCCCCC--cee
Confidence            455667899999997654 55556554333333322  1 33455555  4899999997544 44566654432  122


Q ss_pred             EEe--CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEE
Q psy5768         396 VRL--GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER  473 (652)
Q Consensus       396 ~~~--~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  473 (652)
                      ...  .....-..++|.-  .+-|.+.|+.   .+......--..-+++..-=..|..-++-...+|.|.++...+ +.-
T Consensus       164 agrya~~~~d~~~v~ISG--n~AYvA~~d~---GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vli  237 (370)
T COG5276         164 AGRYALPGGDTHDVAISG--NYAYVAWRDG---GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLI  237 (370)
T ss_pred             eeeeccCCCCceeEEEec--CeEEEEEeCC---CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEE
Confidence            211  1112224577764  6677777763   3333444333333444321123444555566889999987654 556


Q ss_pred             EecCCCceEEEe-cCCCCceeEE---EEeCCEEEEEcCCCCe
Q psy5768         474 CDYDGTNRIVLS-KISPLHPFDM---AVYGEFIFWTDWVIHA  511 (652)
Q Consensus       474 ~~ldG~~~~~l~-~~~~~~p~gl---av~~~~lYwtd~~~~~  511 (652)
                      ++.+|...-+++ .-....|.++   .+-+++.|..|-.++-
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl  279 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGL  279 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccceeeeeccccCc
Confidence            777775533333 3335678777   6779999999977664

>KOG2397|consensus

Probab=87.27  E-value=0.62  Score=49.78  Aligned_cols=51  Identities=31%  Similarity=0.679  Sum_probs=41.0

Q ss_pred             ceeeeccCceeeccCCcccCcccccCCCceeecc-C---eecCCccCCCCCCCCCCCCCCCC
Q psy5768         569 QVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSD-G---MCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       569 ~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~-g---~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ...|.|++|    .|   .+-...|....|.|.| |   .-|+..-.=||+.||-|||||-.
T Consensus        61 Dd~CDC~DG----sD---EPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   61 DDSCDCLDG----SD---EPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             cccccCCCC----CC---CCccccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence            678999999    44   0224568888999997 2   68888888899999999999975

>KOG1219|consensus

Probab=87.08  E-value=0.68  Score=57.73  Aligned_cols=56  Identities=32%  Similarity=0.679  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCcccCc-ccccCCCceeecc-CeecCCc
Q psy5768         543 LDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTI-NTVCSEHDFKCSD-GMCIPFN  609 (652)
Q Consensus       543 ~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~-~~~C~~~~f~C~~-g~Ci~~~  609 (652)
                      ..+|..|||..  ||   .|.+.++| +.|.||.||..   ++|... ...|..  -.|.+ |.|++..
T Consensus      3903 ~epC~snPC~~--Gg---tCip~~n~-f~CnC~~gyTG---~~Ce~~Gi~eCs~--n~C~~gg~C~n~~ 3960 (4289)
T KOG1219|consen 3903 LEPCASNPCLT--GG---TCIPFYNG-FLCNCPNGYTG---KRCEARGISECSK--NVCGTGGQCINIP 3960 (4289)
T ss_pred             cccccCCCCCC--CC---EEEecCCC-eeEeCCCCccC---ceeeccccccccc--ccccCCceeeccC
Confidence            45666677763  33   57887774 99999999865   678764 445652  34666 4888653

>KOG1446|consensus

Probab=86.61  E-value=40  Score=34.35  Aligned_cols=140  Identities=18%  Similarity=0.173  Sum_probs=91.4

Q ss_pred             EEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           4 AVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      ++++...+-|+.+|.. |+.++++-...       -.+.-+-|-.....+.-+. +..+..|+-.++.-.-....+... 
T Consensus        29 litss~dDsl~LYd~~~g~~~~ti~skk-------yG~~~~~Fth~~~~~i~sS-tk~d~tIryLsl~dNkylRYF~GH-   99 (311)
T KOG1446|consen   29 LITSSEDDSLRLYDSLSGKQVKTINSKK-------YGVDLACFTHHSNTVIHSS-TKEDDTIRYLSLHDNKYLRYFPGH-   99 (311)
T ss_pred             EEEecCCCeEEEEEcCCCceeeEeeccc-------ccccEEEEecCCceEEEcc-CCCCCceEEEEeecCceEEEcCCC-
Confidence            3445566788888655 66666665431       1122222333334433333 145678888777654433444555 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                      -..+.    +|++-++. ..+.+-+..+.|..-|+.-+.+..++.  +..+--.|.|| .|.+|-+-.++. .|...++
T Consensus       100 ~~~V~----sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp-~GLifA~~~~~~-~IkLyD~  169 (311)
T KOG1446|consen  100 KKRVN----SLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDP-EGLIFALANGSE-LIKLYDL  169 (311)
T ss_pred             CceEE----EEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECC-CCcEEEEecCCC-eEEEEEe
Confidence            56677    99999866 688888888899999999888888876  45666789999 789998877654 6766654

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=86.52  E-value=0.68  Score=30.81  Aligned_cols=30  Identities=23%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCC--cccceecCCCceEEEeCCcc
Q psy5768         237 TNPCGVNNGGC--AELCLYNGVSAVCACAHGVV  267 (652)
Q Consensus       237 ~n~C~~~ng~C--s~lC~~~~~~~~C~C~~G~l  267 (652)
                      .++|... ..|  .+.|.....+|.|.|+.||.
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~   33 (38)
T cd00054           2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT   33 (38)
T ss_pred             cccCCCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence            4667642 356  35788777789999999984

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG0310|consensus

Probab=86.23  E-value=46  Score=35.85  Aligned_cols=153  Identities=10%  Similarity=0.022  Sum_probs=102.9

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+..+-|.+.++.++.+-  .....+..+++++...+.-++.. -.+++    ..++-..+++|.++-+..+.|..-+.
T Consensus       111 apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~s~a~v~~~l~~h-tDYVR----~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  111 APVHVTKFSPQDNTMLVSG--SDDKVVKYWDLSTAYVQAELSGH-TDYVR----CGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             CceeEEEecccCCeEEEec--CCCceEEEEEcCCcEEEEEecCC-cceeE----eeccccCCCeEEEecCCCceEEEEEe
Confidence            4667788999999999887  56667777888877654345555 67788    88888889999999998999988887


Q ss_pred             CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEE-EEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         118 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI-LAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       118 dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~-~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      .-.- ..+.+-+-..|-.-.+--..|-++.|-.|  +.+..-+|-+..... ....-....+.|.+-..+.||+=..+| 
T Consensus       184 R~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-  259 (487)
T KOG0310|consen  184 RSLT-SRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD-  259 (487)
T ss_pred             ccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc-
Confidence            6552 23333344566665555567888887655  455555655322221 111113456777777778899888887 


Q ss_pred             CcEEE
Q psy5768         197 GNIHI  201 (652)
Q Consensus       197 ~~~~~  201 (652)
                      ++.++
T Consensus       260 ~~VKV  264 (487)
T KOG0310|consen  260 RHVKV  264 (487)
T ss_pred             cceEE
Confidence            44444

>KOG2106|consensus

Probab=85.71  E-value=45  Score=36.26  Aligned_cols=146  Identities=12%  Similarity=0.084  Sum_probs=91.2

Q ss_pred             EEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc----C
Q psy5768         370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT----D  445 (652)
Q Consensus       370 LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~----~  445 (652)
                      ||+-- ..+.|..-++.+    .-.++.....+.-.++|.+|. ..+|.|-......+|++   +   .+.+.+.    .
T Consensus       342 i~vGT-trN~iL~Gt~~~----~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~---~---~k~~wt~~~~d~  409 (626)
T KOG2106|consen  342 ILVGT-TRNFILQGTLEN----GFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN---D---HKLEWTKIIEDP  409 (626)
T ss_pred             EEEee-ccceEEEeeecC----CceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc---C---CceeEEEEecCc
Confidence            66543 345566555543    233344455678899999995 45667654332234443   1   1222211    1


Q ss_pred             ----CCCCce-EEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCC--EEEEEcCCCCeEEEEEcc
Q psy5768         446 ----ITMPNA-LALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE--FIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       446 ----l~~P~g-laiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~--~lYwtd~~~~~I~~~~k~  518 (652)
                          --.|.| ||+-..++++++.|..+..+-.+..++....++.-.....-+++.-.++  |||-.+...+...|+.|-
T Consensus       410 ~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~  489 (626)
T KOG2106|consen  410 AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC  489 (626)
T ss_pred             eeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence                124654 6777888999999998877777777755555554444456677776676  566678888888999999


Q ss_pred             CCceEEEEe
Q psy5768         519 TGEEVYTLR  527 (652)
Q Consensus       519 ~g~~~~~~~  527 (652)
                      .|+.++.+.
T Consensus       490 ~gs~ithLD  498 (626)
T KOG2106|consen  490 SGSPITHLD  498 (626)
T ss_pred             cCceeEEee
Confidence            897666554

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=85.70  E-value=0.8  Score=29.92  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=16.5

Q ss_pred             cccccCCCCceeeeccCceeec
Q psy5768         560 DICKLDETGQVVCSCFTGKVLM  581 (652)
Q Consensus       560 ~lCl~~~~~~~~C~Cp~g~~l~  581 (652)
                      ..|...+. .++|.|+.||...
T Consensus        12 ~~C~~~~~-~~~C~C~~g~~g~   32 (36)
T cd00053          12 GTCVNTPG-SYRCVCPPGYTGD   32 (36)
T ss_pred             CEEecCCC-CeEeECCCCCccc
Confidence            56777665 6999999998764

>PTZ00421 coronin; Provisional

Probab=84.66  E-value=72  Score=35.56  Aligned_cols=145  Identities=7%  Similarity=0.033  Sum_probs=78.7

Q ss_pred             EEEecCCCCeEEEEecCCCe--------eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCcc
Q psy5768           3 IAVSSPTQSKIVVCNLEGEY--------QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR   74 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~   74 (652)
                      ++++....+.|.++++...-        ...+..       .-..+..|+|+|..+.++++-  ...+.|..+++.....
T Consensus        90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H~~~V~~l~f~P~~~~iLaSg--s~DgtVrIWDl~tg~~  160 (493)
T PTZ00421         90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------HTKKVGIVSFHPSAMNVLASA--GADMVVNVWDVERGKA  160 (493)
T ss_pred             EEEEEeCCCEEEEEecCCCccccccCcceEEecC-------CCCcEEEEEeCcCCCCEEEEE--eCCCEEEEEECCCCeE
Confidence            34444556777888775321        112221       235788999999876566665  4678888898875433


Q ss_pred             EEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCC-CcEEEEEeCCCCCceeEEEcCCCCeEEEEecC--
Q psy5768          75 ETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG-QYRYVLISGGVDQPSALAVDPESGYLFWSESG--  151 (652)
Q Consensus        75 ~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg-~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~--  151 (652)
                      ...+... ...+.    ++++.+ .+++.++-+..+.|.+.|+.. +....+....-.....+...+..+.|+-+-+.  
T Consensus       161 ~~~l~~h-~~~V~----sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s  234 (493)
T PTZ00421        161 VEVIKCH-SDQIT----SLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS  234 (493)
T ss_pred             EEEEcCC-CCceE----EEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC
Confidence            3333333 34466    777776 455666666778898888764 32222221111122234444545555543221  


Q ss_pred             CCCeEEEEeCC
Q psy5768         152 KIPLIARAGLD  162 (652)
Q Consensus       152 ~~~~I~~~~ld  162 (652)
                      ....|..-++.
T Consensus       235 ~Dr~VklWDlr  245 (493)
T PTZ00421        235 QQRQIMLWDTR  245 (493)
T ss_pred             CCCeEEEEeCC
Confidence            23345555543

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=83.76  E-value=0.74  Score=30.10  Aligned_cols=28  Identities=25%  Similarity=0.615  Sum_probs=19.4

Q ss_pred             CCCcccceecCCCceEEEeCCccccCCCc
Q psy5768         245 GGCAELCLYNGVSAVCACAHGVVAQDGKS  273 (652)
Q Consensus       245 g~Cs~lC~~~~~~~~C~C~~G~l~~dg~~  273 (652)
                      ..|...|-+.. ...|.||.||++.++.-
T Consensus         6 t~CpA~CDpn~-~~~C~CPeGyIlde~~~   33 (34)
T PF09064_consen    6 TECPADCDPNS-PGQCFCPEGYILDEGSM   33 (34)
T ss_pred             ccCCCccCCCC-CCceeCCCceEecCCcc
Confidence            45777776533 36899999997755543

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.39  E-value=42  Score=35.49  Aligned_cols=93  Identities=10%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             CceEEEEe--CCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCC-ceEEEecCCCEEEEEeCC----CCeEEEEe
Q psy5768         403 KPRGIDID--SCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMP-NALALDHQAEKLFWGDAR----LDKIERCD  475 (652)
Q Consensus       403 ~P~~Iavd--p~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P-~glaiD~~~~~LYw~D~~----~~~I~~~~  475 (652)
                      ....+..-  ...++|++++ ...-.+|+...++|...+.|...+. .. .-+.+|..+++||+.-..    ...+++++
T Consensus       236 ~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~-~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  236 VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDW-EVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS--EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             eecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCce-eecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            33444443  3445555555 3334589999999987554433221 22 258899999999998654    45899999


Q ss_pred             cC-CCceEEEecCCCCceeEEEEe
Q psy5768         476 YD-GTNRIVLSKISPLHPFDMAVY  498 (652)
Q Consensus       476 ld-G~~~~~l~~~~~~~p~glav~  498 (652)
                      ++ |...+.|......| +.+++-
T Consensus       314 ~~~~~~~~~LT~~~~~~-~~~~~S  336 (353)
T PF00930_consen  314 LDSGGEPKCLTCEDGDH-YSASFS  336 (353)
T ss_dssp             TTETTEEEESSTTSSTT-EEEEE-
T ss_pred             eCCCCCeEeccCCCCCc-eEEEEC
Confidence            99 88887776654445 455554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=82.41  E-value=1.1  Score=29.21  Aligned_cols=18  Identities=22%  Similarity=0.523  Sum_probs=14.4

Q ss_pred             cceecC-CCceEEEeCCcc
Q psy5768         250 LCLYNG-VSAVCACAHGVV  267 (652)
Q Consensus       250 lC~~~~-~~~~C~C~~G~l  267 (652)
                      .|+... .+|+|.|+.||.
T Consensus        11 ~C~~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen   11 TCIDLPGGGYTCECPPGYT   29 (32)
T ss_dssp             EEEEESTSEEEEEEBTTEE
T ss_pred             EEEeCCCCCEEeECCCCCc
Confidence            577555 689999999984

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG1225|consensus

Probab=82.09  E-value=2.4  Score=46.76  Aligned_cols=13  Identities=23%  Similarity=0.253  Sum_probs=9.5

Q ss_pred             ceeeeccCceeec
Q psy5768         569 QVVCSCFTGKVLM  581 (652)
Q Consensus       569 ~~~C~Cp~g~~l~  581 (652)
                      .-+|.|+.||...
T Consensus       264 ~G~CIC~~Gf~G~  276 (525)
T KOG1225|consen  264 EGRCICPPGFTGD  276 (525)
T ss_pred             CCeEeCCCCCcCC
Confidence            4578888888753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=81.69  E-value=50  Score=31.59  Aligned_cols=129  Identities=9%  Similarity=0.049  Sum_probs=77.0

Q ss_pred             CeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeC-CCCeEEEEEcCCCCCccEEEEEeCCCCC
Q psy5768         326 KTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCN-NDATINKIDLDSPKAQRIVVVRLGQHDK  403 (652)
Q Consensus       326 ~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~  403 (652)
                      ++-|+.+   ..|++++..+...+.+. ...+.+..++..+.++.+....+ ...+|...++.+     +.+.... ...
T Consensus        32 ~ks~~~~---~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~~-~~~  102 (194)
T PF08662_consen   32 GKSYYGE---FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSFG-TQP  102 (194)
T ss_pred             cceEEee---EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEeec-CCC
Confidence            4445443   34666665554444443 33335888999988888776654 344677677643     2333332 244


Q ss_pred             ceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEe
Q psy5768         404 PRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       404 P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D  465 (652)
                      ...|.-+|...+|..+..+...+.|+-.+++  ..+.+....-...+.++-+++++.|..+.
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence            5679999988888888766544566665555  44455443333455677777766666554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=80.74  E-value=44  Score=32.02  Aligned_cols=60  Identities=10%  Similarity=0.104  Sum_probs=39.9

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD   70 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d   70 (652)
                      |+++.......|.++|.+++....+..         ...-.|.++|.+++|..+......+.|.-++.+
T Consensus        74 favi~g~~~~~v~lyd~~~~~i~~~~~---------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   74 FAVIYGSMPAKVTLYDVKGKKIFSFGT---------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             EEEEEccCCcccEEEcCcccEeEeecC---------CCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            444444445588899998777766653         233468899998888887622224567777776

>KOG0279|consensus

Probab=80.67  E-value=67  Score=32.36  Aligned_cols=174  Identities=13%  Similarity=0.026  Sum_probs=102.3

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v~~~   80 (652)
                      .|+++......|++.+++......=.+.++ -.+.-+.+.++++.+..++ +++-  .-.+.++.+++.++. .+.++ .
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~-~~GHsH~v~dv~~s~dg~~-alS~--swD~~lrlWDl~~g~~t~~f~-G  103 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKYGVPVRR-LTGHSHFVSDVVLSSDGNF-ALSA--SWDGTLRLWDLATGESTRRFV-G  103 (315)
T ss_pred             ceEEEcccceEEEEEEeccCccccCceeee-eeccceEecceEEccCCce-EEec--cccceEEEEEecCCcEEEEEE-e
Confidence            367777778888888887663322111110 0112357788999866554 4465  566788889998753 34443 3


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCC-CCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-VDQPSALAVDPESGYLFWSESGKIPLIARA  159 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~-~~~P~~iavd~~~g~lywtd~~~~~~I~~~  159 (652)
                      . ...+.    ++|++..+..| ++-+..+.|..-+.-|.-..++.... -+-..-+...|.+...|....+....+..=
T Consensus       104 H-~~dVl----sva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW  177 (315)
T KOG0279|consen  104 H-TKDVL----SVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW  177 (315)
T ss_pred             c-CCceE----EEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence            3 34566    99999766655 66666778888887777666665544 455666777776544444443333344555


Q ss_pred             eCCCCCcEEEEeecccCceeEEEeccC
Q psy5768         160 GLDGKKQTILAQEIIMPIKDITLDLKF  186 (652)
Q Consensus       160 ~ldg~~~~~~~~~~~~~p~gl~lD~~~  186 (652)
                      +|++-......-..-+..+.+++.+.+
T Consensus       178 nl~~~~l~~~~~gh~~~v~t~~vSpDG  204 (315)
T KOG0279|consen  178 NLRNCQLRTTFIGHSGYVNTVTVSPDG  204 (315)
T ss_pred             ccCCcchhhccccccccEEEEEECCCC
Confidence            566554332221112345666666543

>KOG4649|consensus

Probab=80.64  E-value=65  Score=32.20  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=38.5

Q ss_pred             eeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         359 EGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       359 ~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      .=+|||..+++|||--.-..+|+-          ...+. .+     -+++--.+|.||+-+.... .+|+....
T Consensus        34 ~~~avd~~sG~~~We~ilg~RiE~----------sa~vv-gd-----fVV~GCy~g~lYfl~~~tG-s~~w~f~~   91 (354)
T KOG4649|consen   34 IVIAVDPQSGNLIWEAILGVRIEC----------SAIVV-GD-----FVVLGCYSGGLYFLCVKTG-SQIWNFVI   91 (354)
T ss_pred             eEEEecCCCCcEEeehhhCceeee----------eeEEE-CC-----EEEEEEccCcEEEEEecch-hheeeeee
Confidence            446999999999997655555541          22221 22     2778888999999987653 26665443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.29  E-value=90  Score=33.64  Aligned_cols=193  Identities=13%  Similarity=0.130  Sum_probs=106.8

Q ss_pred             CCCeEEEeecc----cccEEEEecc--CCcc-eEEe--eccC------ceeeeEEEccCCEEEEEeCCCC----eEEEEE
Q psy5768         324 KRKTLFYSDIQ----KGTINSVFFN--GSNH-RVLL--ERQG------SVEGLAYEYVHNYLYWTCNNDA----TINKID  384 (652)
Q Consensus       324 ~~~~lywsd~~----~~~I~~~~~~--g~~~-~~i~--~~~~------~~~glAvDw~~~~LYwtd~~~~----~I~~~~  384 (652)
                      ..+..||.-..    ...++|....  +... ++++  ..+.      ...++++.+.++.|-++-...|    .|.+.+
T Consensus        77 ~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~D  156 (414)
T PF02897_consen   77 RGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFD  156 (414)
T ss_dssp             ETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEE
T ss_pred             ECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEE
Confidence            35667765322    2345666554  2333 5565  2221      2235788888888877643333    477788


Q ss_pred             cCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC--------CCceEEEeecCCCce--EEEEcCCCCCc---e
Q psy5768         385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH--------LPSIQRAFFSGFGTE--SIITTDITMPN---A  451 (652)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~--------~~~I~r~~ldG~~~~--~l~~~~l~~P~---g  451 (652)
                      +...    +.+-..-......+++-.+....+|++.+...        ..+|++..+.....+  .+... -..+.   +
T Consensus       157 l~tg----~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~  231 (414)
T PF02897_consen  157 LETG----KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPFWFVS  231 (414)
T ss_dssp             TTTT----EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEE
T ss_pred             CCCC----cCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCcEEEE
Confidence            7542    22211001122334788887777888877653        235787777554443  44433 23333   6


Q ss_pred             EEEecCCCEEEEEeC-C-C-CeEEEEecCCC-----ceEEEecCCCCceeEEEEeCCEEEE-EcCC--CCeEEEEEccCC
Q psy5768         452 LALDHQAEKLFWGDA-R-L-DKIERCDYDGT-----NRIVLSKISPLHPFDMAVYGEFIFW-TDWV--IHAVLRANKYTG  520 (652)
Q Consensus       452 laiD~~~~~LYw~D~-~-~-~~I~~~~ldG~-----~~~~l~~~~~~~p~glav~~~~lYw-td~~--~~~I~~~~k~~g  520 (652)
                      +..+.+++.|++.-. + . ..++.++++..     ..+.+.......-+.+...++.+|+ |+..  +++|.+++..+.
T Consensus       232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~  311 (414)
T PF02897_consen  232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADP  311 (414)
T ss_dssp             EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTST
T ss_pred             EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccc
Confidence            777777888876432 2 2 46888888764     4555554443455667777887775 6543  457888887665


Q ss_pred             c
Q psy5768         521 E  521 (652)
Q Consensus       521 ~  521 (652)
                      .
T Consensus       312 ~  312 (414)
T PF02897_consen  312 S  312 (414)
T ss_dssp             S
T ss_pred             c
Confidence            5

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	652
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		1e-65
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		2e-65
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		3e-41
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		9e-65
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		1e-32
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		1e-64
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		1e-32
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		1e-64
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		1e-32
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		8e-42
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		9e-42
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		1e-38
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		4e-37
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		6e-31
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		6e-31
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		3e-30
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		5e-05
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		4e-30
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		3e-05
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		9e-29
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		2e-17

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/616 (28%), Positives = 295/616 (47%), Gaps = 71/616 (11%)
Query: 20  GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 79
           G+   TI+     D + +  + S       G ++WS+V+++ +         + +  VVS
Sbjct: 20  GKENATIVVGGLEDAAAVDFVFS------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 73
Query: 80  QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
               P   AC      DW+ + +YW+D + N IEV+ L G  R VL    +DQP A+A+D
Sbjct: 74  GLLSPDGLAC------DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALD 127
Query: 140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD-----LKFFSAFYRNL 194
           P SG+++W++ G++P I RAG+DG  + I+    I     +TLD     L +  A    +
Sbjct: 128 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 187
Query: 195 SKGNI--------------HIISLSNLSDV---------STISMKPYGDSYLK------- 224
            K N+              H  +L+   D+         S ++   Y    L+       
Sbjct: 188 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF 247
Query: 225 ---DIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGVSAV--CACAHGV-VAQDGKSCSE- 276
              DI  +S+  Q   TNPCG++NGGC+ LCL + V     CAC  GV + ++GK+C + 
Sbjct: 248 SPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 307
Query: 277 -YDAFIMYSRVN-RIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQ 334
             +  ++  R + R  S+   D +D+    E IR++      I + YD     ++++D +
Sbjct: 308 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHA------IAIDYDPVEGYIYWTDDE 361
Query: 335 KGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI 393
              I   F +GS  + ++  Q    +G+A ++V   LYWT   D   ++I++        
Sbjct: 362 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTDRIEVTRLNGTMR 418
Query: 394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALA 453
            ++     ++PR I +D     +YWT+W   +P I+RA   G     ++ T +  PN LA
Sbjct: 419 KILISEDLEEPRAIVLDPMVGYMYWTDW-GEIPKIERAALDGSDRVVLVNTSLGWPNGLA 477
Query: 454 LDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVL 513
           LD+   K++WGDA+ DKIE  + DGT R VL +    H F   + G++++WTDW   ++ 
Sbjct: 478 LDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIE 537
Query: 514 RANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCS 573
           R +K + E    + + +   MG+ A + +       PC   NG C  +C     G + C+
Sbjct: 538 RVHKRSAEREVIIDQ-LPDLMGLKATNVH-RVIGSNPCAEENGGCSHLCLYRPQG-LRCA 594
Query: 574 CFTGKVLMEDNRSCTI 589
           C  G  L+ D ++C +
Sbjct: 595 CPIGFELISDMKTCIV 610

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  247 bits (630), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 169/586 (28%), Positives = 285/586 (48%), Gaps = 65/586 (11%)
Query: 50  GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
           G ++WS+V+++ +         + +  VVS    P   AC      DW+ + +YW+D + 
Sbjct: 52  GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC------DWLGEKLYWTDSET 105
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
           N IEV+ L G  R VL    +DQP A+A+DP SG+++W++ G++P I RAG+DG  + I+
Sbjct: 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165
Query: 170 AQEIIMPIKDITLD-----LKFFSAFYRNLSKGNI--------------HIISLSNLSDV 210
               I     +TLD     L +  A    + K N+              H  +L+   D+
Sbjct: 166 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI 225
Query: 211 ---------STISMKPYGDSYLK----------DIKIYSKDAQ-TGTNPCGVNNGGCAEL 250
                    S ++   Y    L+          DI  +S+  Q   TNPCG++NGGC+ L
Sbjct: 226 LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 285
Query: 251 CLYNGVSAV--CACAHGV-VAQDGKSCSE--YDAFIMYSRVN-RIDSIHMTDKSDLNSPF 304
           CL + V     CAC  GV + ++GK+C +   +  ++  R + R  S+   D +D+    
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL 345
Query: 305 ESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAY 363
           E IR++      I + YD     ++++D +   I   F +GS  + ++  Q    +G+A 
Sbjct: 346 EDIRHA------IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399
Query: 364 EYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS 423
           ++V   LYWT   D   ++I++         ++     ++PR I +D     +YWT+W  
Sbjct: 400 DWVARNLYWT---DTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW-G 455
Query: 424 HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV 483
            +P I+RA   G     ++ T +  PN LALD+   K++WGDA+ DKIE  + DGT R V
Sbjct: 456 EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
Query: 484 LSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNL 543
           L +    H F   + G++++WTDW   ++ R +K + E    + + +   MG+ A + + 
Sbjct: 516 LVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDLMGLKATNVH- 573
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTI 589
                 PC   NG C  +C     G + C+C  G  L+ D ++C +
Sbjct: 574 RVIGSNPCAEENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIV 618

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
           +++   + + +    +++SD+ +  I    FN +     V++    S +GLA +++   L
Sbjct: 39  LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 98
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
           YWT   D+  N+I++ +       V+   + D+PR I +D     +YWT+W   +P I+R
Sbjct: 99  YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 154
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
           A   G     II ++I  PN L LD++ +KL+W DA+L+ I + + DGTNR  + K S  
Sbjct: 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 214
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
           HPF + ++ + ++WTDW  H++L  NKYTGE +  +  +I  PM I A S      A  P
Sbjct: 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 274
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
           C   NG C  +C +        C+C TG  L+E+ ++C
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score =  244 bits (624), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 169/590 (28%), Positives = 278/590 (47%), Gaps = 74/590 (12%)
Query: 51  KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
           +++W++++  + TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   
Sbjct: 48  RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 99
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
           N IEV++L GQ+R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L
Sbjct: 100 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 159
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVS----------TISMKPYG 219
              +      +T+D      ++ +L   + ++I  SN+  ++             +  Y 
Sbjct: 160 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 215
Query: 220 D------------------------------SYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
           D                               Y+ DI ++    Q+G N C  +NG C+ 
Sbjct: 216 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 275
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
           LCL   V   VC C AH  +  D ++CS    F+++S+ + I+ + + ++   D+  P  
Sbjct: 276 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 335
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
           S+RN      +  + YD   K L++ D ++  I     +GS    ++      + L    
Sbjct: 336 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 389
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
              + +    Y+YWTC     IN   LD    + + VV  G+ D+PR I ++     +Y+
Sbjct: 390 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAIVVNPEKGYMYF 446
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
           TN     P I+RA   G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G
Sbjct: 447 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 506
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
            NRIVL   + L P  + V+  +++W D     + + +    E    ++  I +   I A
Sbjct: 507 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 566
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
           + + NL    + PC   NG C  IC +   G   CSC    VL++D  SC
Sbjct: 567 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 616

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
           +AF+++SR   I  I + T+ +++  P   ++ ++       L +D     ++++DI   
Sbjct: 4   EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 57
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
           TI+  F NGS    ++E      EG+A +++   LYW    D   N+I++     Q   V
Sbjct: 58  TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 114
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
           +     D PR + +D  +  +YWT W    P I RA   G    + +  ++   N L +D
Sbjct: 115 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 172
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
           +   +L+W D   + IE  +  G NR V++   P HPF +  Y ++I+WTDW   ++ RA
Sbjct: 173 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 231
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
           NK +G+    ++ ++   M I+    +  +     C   NG+C  +C     G  VC C 
Sbjct: 232 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 290
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
               L  DNR+C+  T       K + + M I   Q+ D +   H
Sbjct: 291 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 335

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 169/590 (28%), Positives = 280/590 (47%), Gaps = 74/590 (12%)
Query: 51  KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
           +++W++++  + TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   
Sbjct: 55  RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 106
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
           N IEV++L GQ+R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L
Sbjct: 107 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 166
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK-----PYGDS--- 221
              +      +T+D      ++ +L   + ++I  SN+  ++   +      P+G +   
Sbjct: 167 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 222
Query: 222 --------------------------------YLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
                                           Y+ DI ++    Q+G N C  +NG C+ 
Sbjct: 223 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 282
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
           LCL   V   VC C AH  +  D ++CS    F+++S+ + I+ + + ++   D+  P  
Sbjct: 283 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 342
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
           S+RN      +  + YD   K L++ D ++  I     +GS    ++      + L    
Sbjct: 343 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 396
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
              + +    Y+YWTC     IN   LD    + + VV  G+ D+PR I ++     +Y+
Sbjct: 397 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAIVVNPEKGYMYF 453
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
           TN     P I+RA   G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G
Sbjct: 454 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 513
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
            NRIVL   + L P  + V+  +++W D     + + +    E    ++  I +   I A
Sbjct: 514 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 573
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
           + + NL    + PC   NG C  IC +   G   CSC    VL++D  SC
Sbjct: 574 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
           +AF+++SR   I  I + T+ +++  P   ++ ++       L +D     ++++DI   
Sbjct: 11  EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 64
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
           TI+  F NGS    ++E      EG+A +++   LYW    D   N+I++     Q   V
Sbjct: 65  TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 121
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
           +     D PR + +D  +  +YWT W    P I RA   G    + +  ++   N L +D
Sbjct: 122 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 179
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
           +   +L+W D   + IE  +  G NR V++   P HPF +  Y ++I+WTDW   ++ RA
Sbjct: 180 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 238
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
           NK +G+    ++ ++   M I+    +  +     C   NG+C  +C     G  VC C 
Sbjct: 239 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 297
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
               L  DNR+C+  T       K + + M I   Q+ D +   H
Sbjct: 298 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 342

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/590 (28%), Positives = 278/590 (47%), Gaps = 74/590 (12%)
Query: 51  KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
           +++W++++  + TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   
Sbjct: 50  RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 101
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
           N IEV++L GQ+R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L
Sbjct: 102 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVS----------TISMKPYG 219
              +      +T+D      ++ +L   + ++I  SN+  ++             +  Y 
Sbjct: 162 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 217
Query: 220 D------------------------------SYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
           D                               Y+ DI ++    Q+G N C  +NG C+ 
Sbjct: 218 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
           LCL   V   VC C AH  +  D ++CS    F+++S+ + I+ + + ++   D+  P  
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
           S+RN      +  + YD   K L++ D ++  I     +GS    ++      + L    
Sbjct: 338 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 391
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
              + +    Y+YWTC     IN   LD    + + VV  G+ D+PR + ++     +Y+
Sbjct: 392 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAVVVNPEKGYMYF 448
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
           TN     P I+RA   G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G
Sbjct: 449 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 508
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
            NRIVL   + L P  + V+  +++W D     + + +    E    ++  I +   I A
Sbjct: 509 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
           + + NL    + PC   NG C  IC +   G   CSC    VL++D  SC
Sbjct: 569 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
           +AF+++SR   I  I + T+ +++  P   ++ ++       L +D     ++++DI   
Sbjct: 6   EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 59
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
           TI+  F NGS    ++E      EG+A +++   LYW    D   N+I++     Q   V
Sbjct: 60  TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 116
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
           +     D PR + +D  +  +YWT W    P I RA   G    + +  ++   N L +D
Sbjct: 117 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 174
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
           +   +L+W D   + IE  +  G NR V++   P HPF +  Y ++I+WTDW   ++ RA
Sbjct: 175 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 233
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
           NK +G+    ++ ++   M I+    +  +     C   NG+C  +C     G  VC C 
Sbjct: 234 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 292
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
               L  DNR+C+  T       K + + M I   Q+ D +   H
Sbjct: 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
           +++   + + +    +++SD+ +  I    FN +     V++    S +GLA +++   L
Sbjct: 34  LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
           YWT   D+  N+I++ +       V+   + D+PR I +D     +YWT+W   +P I+R
Sbjct: 94  YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 149
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
           A   G     II ++I  PN L LD++ +KL+W DA+L+ I + + DGTNR  + K S  
Sbjct: 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 209
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
           HPF + ++ + ++WTDW  H++L  NKYTGE +  +  +I  PM I A S      A  P
Sbjct: 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 269
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
           C   NG C  +C +        C+C TG  L+E+ ++C
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  168 bits (425), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
           +++   + + +    +++SD+ +  I    FN +     V++    S +GLA +++   L
Sbjct: 31  LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
           YWT   D+  N+I++ +       V+   + D+PR I +D     +YWT+W   +P I+R
Sbjct: 91  YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 146
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
           A   G     II ++I  PN L LD++ +KL+W DA+L+ I + + DGTNR  + K S  
Sbjct: 147 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 206
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
           HPF + ++ + ++WTDW  H++L  NKYTGE +  +  +I  PM I A S      A  P
Sbjct: 207 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 266
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
           C   NG C  +C +        C+C TG  L+E+ ++C
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 175/381 (45%), Gaps = 44/381 (11%)
Query: 235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYD--------------- 278
           TG   C VNNGGCA+ C     +  C C  G  + +DG++C + +               
Sbjct: 1   TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 279 --AFIMYSRVN---RIDS-----------IHMTDKSDLNSPFESIRNSTMM----KNIIE 318
             AF  +       R D            +   ++ D+          T++    +N I 
Sbjct: 61  EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 319 LSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLLERQGSVEGLAYEYVHNYLYWTCNND 377
           L + ++R+ +F+SD+    I     NGSN   V+     S  GLA ++VH+ LYWT +  
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180
Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
           + I   +LD    + ++   L   +KPR I +   +  IYWT+W +  P I+ +   G G
Sbjct: 181 SRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG 236
Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR-IVLSKISPLHPFDMA 496
              I  T +  PN L +D+   +++W DA+   IER + DG++R  V+S+  P HPF + 
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAIT 295
Query: 497 VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNG 556
           V+ + ++WTDW   ++  ANK+TG+    +R  +  PM I  +        K  C   NG
Sbjct: 296 VFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355
Query: 557 NCDDICKLDETGQVVCSCFTG 577
            C  +C L       C+C TG
Sbjct: 356 GCTHLC-LPSGQNYTCACPTG 375

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 164/336 (48%), Gaps = 14/336 (4%)
Query: 245 GGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSP 303
           G C++ C  +  +  C C  G  +  D +SC       +    NRID   +       S 
Sbjct: 8   GYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH---RSE 64
Query: 304 FESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLLERQGSVEGLA 362
           +  + N+  ++N I L + ++R+ +F+SD+    I     NGSN   V+     S  GLA
Sbjct: 65  YTLLLNN--LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122
Query: 363 YEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN 422
            ++VH+ LYWT +  + I   +LD    + ++   L   +KPR I +   +  IYWT+W 
Sbjct: 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWG 179
Query: 423 SHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR- 481
           +  P I+ +   G G   I  T +  PN L +D+   +++W DA+   IER + DG++R 
Sbjct: 180 N-TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 482 IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD 541
            V+S+  P HPF + V+ + ++WTDW   ++  ANK+TG+    +R  +  PM I  +  
Sbjct: 239 AVISQGLP-HPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTG 577
                 K  C   NG C  +C L       C+C TG
Sbjct: 298 QRQPAGKNRCGDNNGGCTHLC-LPSGQNYTCACPTG 332

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 31/360 (8%)
Query: 247 CAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMT-DKSDLNSPF 304
           C++LC+       C C  G  +    K+C    +       NR +   MT D+S+  S  
Sbjct: 49  CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 108
Query: 305 ESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLERQ-GSVE 359
            ++RN      ++ L  +     +++SD+ +  I S   +     S++  ++ R   + +
Sbjct: 109 PNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162
Query: 360 GLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT 419
           GLA +++H+ +YWT   D+ +  + +   K  +   +      KPR I +D     +YWT
Sbjct: 163 GLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
Query: 420 NWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT 479
           +W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I   D +G 
Sbjct: 220 DWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278
Query: 480 NR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIV 537
           NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+  P  +V
Sbjct: 279 NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338
Query: 538 AISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLMEDNRSC 587
              +      ++ C +T     NG C  +C         + +  C+C  G +L  D RSC
Sbjct: 339 LFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
           +D + +S +   + GTN C  NNGGC+ +C    +   C C  G  +VAQ          
Sbjct: 25  RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 84
Query: 270 DGKSCSEY------------------------------DAFIMYSRVNRIDSIHMT-DKS 298
           D  +CS+                                A++ ++  NR +   MT D+S
Sbjct: 85  DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 142
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
           +  S   ++RN      ++ L  +     +++SD+ +  I S   +     S++  ++ R
Sbjct: 143 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 196
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
              + +GLA +++H+ +YWT   D+ +  + +   K  +   +      KPR I +D   
Sbjct: 197 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 253
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
             +YWT+W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I  
Sbjct: 254 GFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
            D +G NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+ 
Sbjct: 313 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 372
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
            P  +V   +      ++ C +T     NG C  +C         + +  C+C  G +L 
Sbjct: 373 SPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 430
Query: 582 EDNRSC 587
            D RSC
Sbjct: 431 RDMRSC 436

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
           +D + +S +   + GTN C  NNGGC+ +C    +   C C  G  +VAQ          
Sbjct: 279 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 338
Query: 270 DGKSCSEYD------------------------------AFIMYSRVNRIDSIHMT-DKS 298
           D  +CS+                                A++ ++  NR +   MT D+S
Sbjct: 339 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 396
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
           +  S   ++RN      ++ L  +     +++SD+ +  I S   +     S++  ++ R
Sbjct: 397 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
              + +GLA +++H+ +YWT   D+ +  + +   K  +   +   Q  KPR I +D   
Sbjct: 451 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVH 507
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
             +YWT+W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I  
Sbjct: 508 GFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
            D +G NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+ 
Sbjct: 567 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 626
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
            P  +V          ++ C +T     NG C  +C         + +  C+C  G +L 
Sbjct: 627 SPEDMVLFHQLTQPRGVNWCERT--TLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 684
Query: 582 EDNRSC 587
            D RSC
Sbjct: 685 RDMRSC 690

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE-GILYCAMRDCRPGYFKC 641
           D  +C + T C   +F+CSDG CI  ++ CDR Y+C D SDE G +   + +  P  FKC
Sbjct: 206 DEENCAVAT-CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE-GPNKFKC 263
Query: 642 DNNKCI 647
            + +CI
Sbjct: 264 HSGECI 269

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
           +D + +S +   + GTN C  NNGGC+ +C    +   C C  G  +VAQ          
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 356
Query: 270 DGKSCSEYD------------------------------AFIMYSRVNRIDSIHMT-DKS 298
           D  +CS+                                A++ ++  NR +   MT D+S
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 414
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
           +  S   ++RN      ++ L  +     +++SD+ +  I S   +     S++  ++ R
Sbjct: 415 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
              + +GLA +++H+ +YWT   D+ +  + +   K  +   +      KPR I +D   
Sbjct: 469 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
             +YWT+W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I  
Sbjct: 526 GFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
            D +G NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+ 
Sbjct: 585 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 644
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
            P  +V   +      ++ C +T     NG C  +C         + +  C+C  G +L 
Sbjct: 645 SPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 702
Query: 582 EDNRSC 587
            D RSC
Sbjct: 703 RDMRSC 708

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE-GILYCAMRDCRPGYFKC 641
           D  +C + T C   +F+CSDG CI  ++ CDR Y+C D SDE G +   + +  P  FKC
Sbjct: 224 DEENCAVAT-CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE-GPNKFKC 281
Query: 642 DNNKCI 647
            + +CI
Sbjct: 282 HSGECI 287

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 161/327 (49%), Gaps = 32/327 (9%)
Query: 279 AFIMYSRVNRIDSIHMT-DKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
           A++ ++  NR +   MT D+S+  S   ++RN      ++ L  +     +++SD+ +  
Sbjct: 2   AYLFFT--NRHEVRKMTLDRSEYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRM 53
Query: 338 INSVFFNG----SNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR 392
           I S   +     S++  ++ R   + +GLA +++H+ +YWT   D+ +  + +   K  +
Sbjct: 54  ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVK 110
Query: 393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNAL 452
              +      KPR I +D     +YWT+W +    I++   +G    S++T +I  PN +
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 453 ALDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIH 510
            LD  + +L+W D++L  I   D +G NR  I+  +    HPF +AV+ + +FWTD +  
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229
Query: 511 AVLRANKYTGEEVYTLRKNIRRPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL- 564
           A+  AN+ TG +V  L +N+  P  +V   +      ++ C +T     NG C  +C   
Sbjct: 230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPA 287
Query: 565 ----DETGQVVCSCFTGKVLMEDNRSC 587
                 + +  C+C  G +L  D RSC
Sbjct: 288 PQINPHSPKFTCACPDGMLLARDMRSC 314

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Query: 314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYW 372
           K II L++D   K ++++DI + +I     +G     ++ +  GS EG+A +++   ++W
Sbjct: 36  KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFW 95
Query: 373 TCNNDATINKIDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRA 431
           T   D+ +++I++      QR V+   G  + PRGI  D     +YWT+WN   P I+ +
Sbjct: 96  T---DSQLDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNRDNPKIETS 151
Query: 432 FFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCD-YDGTNRIVLSKISPL 490
              G     +   ++ +PN L  D  + +L W DA   + E  +      R VL  +   
Sbjct: 152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-- 209
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTL 526
           +PF +  YG+ +++TDW  ++V+  +    +E+ T 
Sbjct: 210 YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	652
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-115
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-100
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	9e-40
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-71
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-38
3v65_B	386	Low-density lipoprotein receptor-related protein;	9e-09
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	4e-68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	7e-37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	8e-68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	5e-32
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	5e-65
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	6e-65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	3e-35
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	5e-12
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	8e-62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-41
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	7e-12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	7e-12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-14
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	9e-19
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	3e-09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	3e-07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-05
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	4e-17
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	5e-09
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	3e-15
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-08
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	1e-09
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	2e-09
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	3e-09
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	1e-08
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-08
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	2e-08
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	2e-08
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	1e-07
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	2e-08
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	3e-07
2wph_E	59	Coagulation factor IXA light chain; serine proteas	2e-08
2wph_E	59	Coagulation factor IXA light chain; serine proteas	1e-07
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	3e-08
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	4e-08
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	6e-08
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	2e-07
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	8e-08
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	5e-07
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-05
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	4e-07
1cr8_A	42	Protein (LOW density lipoprotein receptor related	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	6e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-04
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	3e-04
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	4e-04

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  358 bits (919), Expect = e-115
 Identities = 166/645 (25%), Positives = 281/645 (43%), Gaps = 75/645 (11%)

Query: 2   FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV 61
           F+  S   ++ I   +LE       +       + + + S++       +++W++++ + 
Sbjct: 8   FLLFS--RRADIRRISLETNNNNVAI-----PLTGVKEASALDFDVTDNRIYWTDISLK- 59

Query: 62  VTIEMAFMDGTKRETVV-SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ 120
            TI  AFM+G+  E VV     YP        +AVDW+ +N+YW+D   N IEV++L GQ
Sbjct: 60  -TISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112

Query: 121 YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 180
           +R VL+   +D P ALA+DP  G+++W+E G  P I RA +DG ++T L   +      +
Sbjct: 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRAN-GL 171

Query: 181 TLDLKFFSAFYRNLSKGNIHIISLS----------------------------------- 205
           T+D      ++ +L    I   ++                                    
Sbjct: 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIE 231

Query: 206 --NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGV-SAVCAC 262
             N +     ++      Y+ DI ++    Q+G N C  +NG C+ LCL   V   VC C
Sbjct: 232 RANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGC 291

Query: 263 AHGVV-AQDGKSCSEYDAFIMYSRVNRIDSIHM--TDKSDLNSPFESIRNSTMMKNIIEL 319
                   D ++CS    F+++S+ + I+ + +      D+  P  S+      +N+  +
Sbjct: 292 PAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSL------RNVRAI 345

Query: 320 SYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE-------RQGSVEGLAYEYVHNYLYW 372
            YD   K L++ D ++  I     +GS    ++         +     L+ +    Y+YW
Sbjct: 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405

Query: 373 TCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAF 432
           TC     IN   LD      ++       D+PR + ++     +Y+TN     P I+RA 
Sbjct: 406 TCEATNVINVTRLDGRSVGVVLKGEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462

Query: 433 FSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHP 492
             G   E +  + ++ P ALALD +  KLFW D+ L +IE  D  G NRIVL   + L P
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQP 522

Query: 493 FDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD-NLDACAKTPC 551
             + V+  +++W D     + + +    E    ++  I +   I A+ + NL    + PC
Sbjct: 523 VGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPC 582

Query: 552 RHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH 596
              NG C  IC +   G   CSC    VL++D  SC        H
Sbjct: 583 AQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHHH 627

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  198 bits (505), Expect = 1e-55
 Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 13/317 (4%)

Query: 278 DAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
           +AF+++SR   I  I +       +        T +K    L +D     ++++DI   T
Sbjct: 6   EAFLLFSRRADIRRISLE-----TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60

Query: 338 INSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVV 396
           I+  F NGS    ++E      EG+A +++   LYW       I    LD     R V+V
Sbjct: 61  ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLV 118

Query: 397 RLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH 456
                D PR + +D  +  +YWT W    P I RA   G    +++  ++   N L +D+
Sbjct: 119 WKDL-DSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLV-PNVGRANGLTIDY 175

Query: 457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRAN 516
              +L+W D   + IE  +  G NR V++   P HPF +  Y ++I+WTDW   ++ RAN
Sbjct: 176 AKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERAN 234

Query: 517 KYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFT 576
           K +G+    ++ ++   M I+ +  +        C   NG+C  +C     G  VC C  
Sbjct: 235 KTSGQNRTIIQGHLDYVMDIL-VFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA 293

Query: 577 GKVLMEDNRSCTINTVC 593
              L  DNR+C+  T  
Sbjct: 294 HYSLNADNRTCSAPTTF 310

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 1   MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
           M+         KI    L+G  +  +        S LSK  ++A+    GK+FW++   +
Sbjct: 446 MYFTNLQERSPKIERAALDGTEREVLFF------SGLSKPIALALDSRLGKLFWADSDLR 499

Query: 61  VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ 120
              IE + + G  R  +               + +      +YW D ++ +IE   +TG+
Sbjct: 500 --RIESSDLSGANRIVLEDSNILQP-------VGLTVFENWLYWIDKQQQMIEKIDMTGR 550

Query: 121 YRYVLISGGVDQPSALAV 138
                +   + Q S +  
Sbjct: 551 EGRTKVQARIAQLSDIHA 568

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  317 bits (813), Expect = e-100
 Identities = 154/593 (25%), Positives = 268/593 (45%), Gaps = 57/593 (9%)

Query: 37  LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVD 96
           L   +++      G ++WS+V+++   I+    + T+    V      +       +A D
Sbjct: 39  LEDAAAVDFVFSHGLIYWSDVSEE--AIKRTEFNKTESVQNVVVSGLLSPDG----LACD 92

Query: 97  WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 156
           W+ + +YW+D + N IEV+ L G  R VL    +DQP A+A+DP SG+++W++ G++P I
Sbjct: 93  WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152

Query: 157 ARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTI--- 213
            RAG+DG  + I+    I     +TLD +    ++ +     IH  +L   +  + +   
Sbjct: 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212

Query: 214 -----SMKPYGDS-YLKDIK---IYSKDAQTGT--------------------------- 237
                ++  + D  Y  D     I + +  TG                            
Sbjct: 213 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 272

Query: 238 NPCGVNNGGCAELCLYNGVSA--VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMT 295
           NPCG++NGGC+ LCL + V     CAC  GV   +     +  A  +     R D   + 
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI- 331

Query: 296 DKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ 355
              D     + +     +++ I + YD     ++++D +   I   F +GS  + ++  Q
Sbjct: 332 -SLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ 390

Query: 356 -GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS 414
               +G+A ++V   LYWT      I    L+    + ++   L   ++PR I +D    
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDL---EEPRAIVLDPMVG 447

Query: 415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERC 474
            +YWT+W    P I+RA   G     ++ T +  PN LALD+   K++WGDA+ DKIE  
Sbjct: 448 YMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506

Query: 475 DYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
           + DGT R VL +    H F   + G++++WTDW   ++ R +K + E    +   +   M
Sbjct: 507 NTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAERE-VIIDQLPDLM 565

Query: 535 GIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
           G+ A + +    +       NG C  +C L     + C+C  G  L+ D ++C
Sbjct: 566 GLKATNVHRVIGSNPCAEE-NGGCSHLC-LYRPQGLRCACPIGFELISDMKTC 616

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  199 bits (507), Expect = 6e-56
 Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 12/350 (3%)

Query: 273 SCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSD 332
               +   ++Y+    +  +  T+  +  +          +++   + + +    +++SD
Sbjct: 4   HHHHHAPLLLYANRRDLRLVDATNGKENATIV-----VGGLEDAAAVDFVFSHGLIYWSD 58

Query: 333 IQKGTINSVFFNGSNHR--VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA 390
           + +  I    FN +     V++    S +GLA +++   LYWT +    I   +LD    
Sbjct: 59  VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117

Query: 391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPN 450
            R V+    + D+PR I +D     +YWT+W    P I+RA   G     II ++I  PN
Sbjct: 118 -RKVLFW-QELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPN 174

Query: 451 ALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIH 510
            L LD++ +KL+W DA+L+ I + + DGTNR  + K S  HPF + ++ + ++WTDW  H
Sbjct: 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTH 234

Query: 511 AVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDIC-KLDETGQ 569
           ++L  NKYTGE +  +  +I  PM I A S      A  PC   NG C  +C        
Sbjct: 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 294

Query: 570 VVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCH 619
             C+C TG  L+E+ ++C           + +D   I  +          
Sbjct: 295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ 344

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  153 bits (388), Expect = 9e-40
 Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 45/278 (16%)

Query: 35  STLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIA 94
             +    +I   PV+G ++W++   +   I  +F+DG+  + VV+ +           IA
Sbjct: 346 EDIRHAIAIDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQIAHPD-----GIA 398

Query: 95  VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 154
           VDW+A+N+YW+D   + IEV RL G  R +LIS  +++P A+ +DP  GY++W++ G+IP
Sbjct: 399 VDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIP 458

Query: 155 LIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTIS 214
            I RA LDG  + +L    +     + LD      ++ +     I +++         + 
Sbjct: 459 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518

Query: 215 MK-------------------------------------PYGDSYLKDIKIYSKDAQTGT 237
            K                                           L  +K  +     G+
Sbjct: 519 DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGS 578

Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
           NPC   NGGC+ LCLY      CAC  G  +  D K+C
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  235 bits (601), Expect = 1e-71
 Identities = 101/391 (25%), Positives = 169/391 (43%), Gaps = 43/391 (10%)

Query: 235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYD--------------- 278
           TG   C VNNGGCA+ C     +  C C  G  + +DG++C + +               
Sbjct: 1   TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60

Query: 279 --------------------AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIE 318
                                  +      + +  +  +  L    E       ++N I 
Sbjct: 61  EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120

Query: 319 LSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNND 377
           L + ++R+ +F+SD+    I     NGSN   ++     S  GLA ++VH+ LYWT +  
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180

Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
           + I   +LD    + ++   L   +KPR I +   +  IYWT+W +  P I+ +   G G
Sbjct: 181 SRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSG 236

Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAV 497
              I  T +  PN L +D+   +++W DA+   IER + DG++R  +      HPF + V
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296

Query: 498 YGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGN 557
           + + ++WTDW   ++  ANK+TG+    +R  +  PM I  +        K  C   NG 
Sbjct: 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGG 356

Query: 558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
           C  +C         C+C TG     ++ +C 
Sbjct: 357 CTHLCLPSGQN-YTCACPTGFRK-INSHACA 385

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  145 bits (367), Expect = 2e-38
 Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 50/271 (18%)

Query: 47  PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
             +  +FWS+VT     I  A ++G+  E VVS             +AVDW+   +YW+D
Sbjct: 125 HRRELVFWSDVTLD--RILRANLNGSNVEEVVSTGLESPG-----GLAVDWVHDKLYWTD 177

Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
              + IEVA L G +R VL+   +++P A+A+ P  G ++W++ G  P I  + +DG  +
Sbjct: 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237

Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
            I+A   +     +T+D           K       NL   +   +    L     I++ 
Sbjct: 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV- 296

Query: 217 PYGD----SYLKDIKIYSKDAQTGTN---------------------------PCGVNNG 245
            + D    +      I S +  TG N                            CG NNG
Sbjct: 297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355

Query: 246 GCAELCLYNGVSAVCACAHGVVAQDGKSCSE 276
           GC  LCL +G +  CAC  G    +  +C++
Sbjct: 356 GCTHLCLPSGQNYTCACPTGFRKINSHACAQ 386

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 56.7 bits (136), Expect = 9e-09
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 89  CNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 148
             + +      + ++WSD   + I  A L G     ++S G++ P  LAVD     L+W+
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176

Query: 149 ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 183
           +SG    I  A LDG  + +L  + +   + I L 
Sbjct: 177 DSGT-SRIEVANLDGAHRKVLLWQSLEKPRAIALH 210

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG-MCIPF 608
            C   NG C   C     G V C+C TG  L ED R+C     C+E  + CS G      
Sbjct: 5   NCNVNNGGCAQKC-QMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGY-CSQGCTNSEG 62

Query: 609 NQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
              C        + D         +    +    + + 
Sbjct: 63  AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  224 bits (571), Expect = 4e-68
 Identities = 93/322 (28%), Positives = 157/322 (48%), Gaps = 12/322 (3%)

Query: 278 DAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
              ++Y+    +  +  T+  +      +      +++   + + +    +++SD+ +  
Sbjct: 4   APLLLYANRRDLRLVDATNGKE-----NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58

Query: 338 INSVFFNGSNH--RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
           I    FN +     V++    S +GLA +++   LYWT +    I   +LD     R V+
Sbjct: 59  IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVL 116

Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
               + D+PR I +D     +YWT+W    P I+RA   G     II ++I  PN L LD
Sbjct: 117 FW-QELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLD 174

Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
           ++ +KL+W DA+L+ I + + DGTNR  + K S  HPF + ++ + ++WTDW  H++L  
Sbjct: 175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILAC 234

Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLD-ETGQVVCSC 574
           NKYTGE +  +  +I  PM I A S      A  PC   NG C  +C +        C+C
Sbjct: 235 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 294

Query: 575 FTGKVLMEDNRSCTINTVCSEH 596
            TG  L+E+ ++C        H
Sbjct: 295 PTGVKLLENGKTCKDGNSHHHH 316

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  139 bits (351), Expect = 7e-37
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 48/285 (16%)

Query: 37  LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVD 96
           L   +++      G ++WS+V+++   I+    + T+    V      +       +A D
Sbjct: 34  LEDAAAVDFVFSHGLIYWSDVSEE--AIKRTEFNKTESVQNVVVSGLLSPDG----LACD 87

Query: 97  WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 156
           W+ + +YW+D + N IEV+ L G  R VL    +DQP A+A+DP SG+++W++ G++P I
Sbjct: 88  WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147

Query: 157 ARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTI--- 213
            RAG+DG  + I+    I     +TLD +    ++ +     IH  +L   +  + +   
Sbjct: 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207

Query: 214 -----SMKPYGDS-YLKDI---KIYSKDAQTGTN-------------------------- 238
                ++  + D  Y  D     I + +  TG                            
Sbjct: 208 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 267

Query: 239 -PCGVNNGGCAELCLYN--GVSAVCACAHGVV-AQDGKSCSEYDA 279
            PCG++NGGC+ LCL +       CAC  GV   ++GK+C + ++
Sbjct: 268 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  226 bits (576), Expect = 8e-68
 Identities = 93/400 (23%), Positives = 162/400 (40%), Gaps = 54/400 (13%)

Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD------------------- 278
           N C  NNGGC+ +C    +   C C  G      + C + D                   
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60

Query: 279 ----------------AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD 322
                              + S      +     +       E       ++N++ L  +
Sbjct: 61  KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120

Query: 323 YKRKTLFYSDIQKGTINSVFFNGSNHRVLLER-----QGSVEGLAYEYVHNYLYWTCNND 377
                +++SD+ +  I S   + ++     +        + +GLA +++H+ +YWT +  
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180

Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
            T++  D    K  R  + R     KPR I +D     +YWT+W +    I++   +G  
Sbjct: 181 GTVSVADTKGVK--RKTLFRENG-SKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVD 236

Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDM 495
             S++T +I  PN + LD  + +L+W D++L  I   D +G NR  I+  +    HPF +
Sbjct: 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 296

Query: 496 AVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHL- 554
           AV+ + +FWTD +  A+  AN+ TG +V  L +N+  P  +V   +         C    
Sbjct: 297 AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTT 356

Query: 555 --NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRSC 587
             NG C  +C         + +  C+C  G +L  D RSC
Sbjct: 357 LSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  127 bits (320), Expect = 5e-32
 Identities = 68/279 (24%), Positives = 109/279 (39%), Gaps = 54/279 (19%)

Query: 47  PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
               +++WS+++++   I    +D     +         + A +  +AVDWI  NIYW+D
Sbjct: 121 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTD 177

Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
                + VA   G  R  L      +P A+ VDP  G+++W++ G    I + GL+G   
Sbjct: 178 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237

Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
             L  E I     ITLDL          K  S    +++ GN   I           S+ 
Sbjct: 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 297

Query: 217 PYGD----SYLKDIKIYSKDAQTG---------------------------TNPC---GV 242
            + D    + + +  I+S +  TG                            N C    +
Sbjct: 298 VFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTL 357

Query: 243 NNGGCAELCL------YNGVSAVCACAHG-VVAQDGKSC 274
           +NGGC  LCL       +     CAC  G ++A+D +SC
Sbjct: 358 SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  217 bits (552), Expect = 5e-65
 Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 14/357 (3%)

Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTD 296
           N C    G C++ C  +  +  C C  G  +  D +SC       +    NRID   +  
Sbjct: 2   NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60

Query: 297 KSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ- 355
                +          ++N I L + ++R+ +F+SD+    I     NGSN   ++    
Sbjct: 61  HRSEYTLL-----LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115

Query: 356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSR 415
            S  GLA ++VH+ LYWT +  + I   +LD    + ++   L   +KPR I +   +  
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGT 172

Query: 416 IYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCD 475
           IYWT+W +  P I+ +   G G   I  T +  PN L +D+   +++W DA+   IER +
Sbjct: 173 IYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231

Query: 476 YDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMG 535
            DG++R  +      HPF + V+ + ++WTDW   ++  ANK+TG+    +R  +  PM 
Sbjct: 232 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 291

Query: 536 IVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTV 592
           I  +        K  C   NG C  +C         C+C TG   + ++ +C +  +
Sbjct: 292 IHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNY-TCACPTGFRKI-NSHACALEVL 346

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  144 bits (364), Expect = 2e-38
 Identities = 76/320 (23%), Positives = 127/320 (39%), Gaps = 55/320 (17%)

Query: 1   MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
               +    +  I          T +L+N       L    ++     +  +FWS+VT  
Sbjct: 43  PEPVLLFANRIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRRELVFWSDVTLD 95

Query: 61  VVTIEMAFMDGTKRETVV-SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG 119
              I  A ++G+  E VV +  + P        +AVDW+   +YW+D   + IEVA L G
Sbjct: 96  R--ILRANLNGSNVEEVVSTGLESPG------GLAVDWVHDKLYWTDSGTSRIEVANLDG 147

Query: 120 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 179
            +R VL+   +++P A+A+ P  G ++W++ G  P I  + +DG  + I+A   +     
Sbjct: 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 207

Query: 180 ITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK---PYGDSYLKDI---------K 227
           +T+D      ++ +     I   +L      + IS     P+  +  +D           
Sbjct: 208 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKS 267

Query: 228 IYSKDAQTG---------------------------TNPCGVNNGGCAELCLYNGVSAVC 260
           I S +  TG                            N CG NNGGC  LCL +G +  C
Sbjct: 268 INSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTC 327

Query: 261 ACAHGVVAQDGKSCSEYDAF 280
           AC  G    +  +C+    F
Sbjct: 328 ACPTGFRKINSHACALEVLF 347

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  214 bits (546), Expect = 6e-65
 Identities = 60/266 (22%), Positives = 120/266 (45%), Gaps = 7/266 (2%)

Query: 280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTIN 339
            +++++  +I+ + + +++ +             K II L++D   K ++++DI + +I 
Sbjct: 3   HLLFAQTGKIERLPL-ERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61

Query: 340 SVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL 398
               +G     ++ +  GS EG+A +++   ++WT +    I    +D    QR V+   
Sbjct: 62  RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRRVLFDT 119

Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQA 458
           G    PRGI  D     +YWT+WN   P I+ +   G     +   ++ +PN L  D  +
Sbjct: 120 GL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178

Query: 459 EKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKY 518
            +L W DA   + E  +     R  + +    +PF +  YG+ +++TDW  ++V+  +  
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLA 237

Query: 519 TGEEVYTL-RKNIRRPMGIVAISDNL 543
             +E+ T       R  GI       
Sbjct: 238 ISKEMDTFHPHKQTRLYGITIALSQC 263

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  133 bits (336), Expect = 3e-35
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 20/236 (8%)

Query: 9   TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 68
              KI    LE        +           I  +A   V   ++W+++++   +I  A 
Sbjct: 8   QTGKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDISEP--SIGRAS 64

Query: 69  MDGTKRETVVSQKKYPAVTACNLH----IAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 124
           + G +  T++ Q         +L     IA+D + + I+W+D + + IEVA++ G  R V
Sbjct: 65  LHGGEPTTIIRQ---------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115

Query: 125 LISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDITLD 183
           L   G+  P  +  DP  G L+W++  +  P I  + +DG  + ILAQ+ +     +T D
Sbjct: 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175

Query: 184 LKFFSAFYRNLSKGNIHIISL--SNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT 237
                  + +        ++        V      P+  +      +Y  D +T +
Sbjct: 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-NLYYTDWKTNS 230

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 17/143 (11%)

Query: 1   MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
           ++    +    KI   +++G  +  +          L   + +       ++ W +    
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQ------DNLGLPNGLTFDAFSSQLCWVDAGTH 189

Query: 61  VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA-RLTG 119
               E        R  V+   +YP        +      +N+Y++D K N +        
Sbjct: 190 --RAECLNPAQPGRRKVLEGLQYP------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239

Query: 120 QYRYVLISGGVDQPSALAVDPES 142
           +           +   + +    
Sbjct: 240 KEMDTFHPHKQTRLYGITIALSQ 262

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  207 bits (528), Expect = 8e-62
 Identities = 84/324 (25%), Positives = 155/324 (47%), Gaps = 26/324 (8%)

Query: 279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTI 338
           A++ ++  + +  + + D+S+  S   ++RN      ++ L  +     +++SD+ +  I
Sbjct: 2   AYLFFTNRHEVRKMTL-DRSEYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMI 54

Query: 339 NSVFFNGSN-----HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI 393
            S   + ++       V+     + +GLA +++H+ +YWT +   T++  D    K  R 
Sbjct: 55  CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RK 112

Query: 394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALA 453
            + R     KPR I +D     +YWT+W +    I++   +G    S++T +I  PN + 
Sbjct: 113 TLFRENG-SKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGIT 170

Query: 454 LDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHA 511
           LD  + +L+W D++L  I   D +G NR  I+  +    HPF +AV+ + +FWTD +  A
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230

Query: 512 VLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHL---NGNCDDIC-----K 563
           +  AN+ TG +V  L +N+  P  +V   +         C      NG C  +C      
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQI 290

Query: 564 LDETGQVVCSCFTGKVLMEDNRSC 587
              + +  C+C  G +L  D RSC
Sbjct: 291 NPHSPKFTCACPDGMLLARDMRSC 314

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  151 bits (383), Expect = 3e-41
 Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 63/324 (19%)

Query: 2   FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV 61
           ++  +   + ++    L+    T+++ N       L  + ++       +++WS+++++ 
Sbjct: 3   YLFFT--NRHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASNRIYWSDLSQR- 52

Query: 62  VTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY 121
             I    +D     +         + A +  +AVDWI  NIYW+D     + VA   G  
Sbjct: 53  -MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110

Query: 122 RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 181
           R  L      +P A+ VDP  G+++W++ G    I + GL+G     L  E I     IT
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 170

Query: 182 LDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---K 227
           LDL          K  S    +++ GN   I           S+  + D  +  DI    
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230

Query: 228 IYSKDAQTG---------------------------TNPCG---VNNGGCAELCL----- 252
           I+S +  TG                            N C    ++NGGC  LCL     
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQI 290

Query: 253 -YNGVSAVCACAHG-VVAQDGKSC 274
             +     CAC  G ++A+D +SC
Sbjct: 291 NPHSPKFTCACPDGMLLARDMRSC 314

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  207 bits (527), Expect = 3e-58
 Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 25/368 (6%)

Query: 243 NNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN 301
           +   C++LC+       C C  G  +    K+C    +       NR +   MT      
Sbjct: 339 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 398

Query: 302 SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----RVLLERQG 356
           +          ++N++ L  +     +++SD+ +  I S   + ++       V+     
Sbjct: 399 TSLIP-----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453

Query: 357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRI 416
           + +GLA +++H+ +YWT +   T++  D    K + +   +     KPR I +D     +
Sbjct: 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---SKPRAIVVDPVHGFM 510

Query: 417 YWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY 476
           YWT+W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I   D 
Sbjct: 511 YWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569

Query: 477 DGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
           +G NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+  P 
Sbjct: 570 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 629

Query: 535 GIVAISDNLDACAKTPCRHL---NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRS 586
            +V             C      NG C  +C         + +  C+C  G +L  D RS
Sbjct: 630 DMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 689

Query: 587 CTINTVCS 594
           C      +
Sbjct: 690 CLTEAEAA 697

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  131 bits (330), Expect = 4e-32
 Identities = 67/281 (23%), Positives = 107/281 (38%), Gaps = 54/281 (19%)

Query: 47  PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
               +++WS+++++   I    +D     +         + A +  +AVDWI  NIYW+D
Sbjct: 415 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTD 471

Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
                + VA   G  R  L      +P A+ VDP  G+++W++ G    I + GL+G   
Sbjct: 472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531

Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
             L  E I     ITLDL          K  S    +++ GN   I           S+ 
Sbjct: 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 591

Query: 217 PYGDSY------------------------------LKDIKIYSKDAQT-GTNPCG---V 242
            + D                                 +D+ ++ +  Q  G N C    +
Sbjct: 592 VFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTL 651

Query: 243 NNGGCAELCLYN------GVSAVCACAHGVV-AQDGKSCSE 276
           +NGGC  LCL             CAC  G++ A+D +SC  
Sbjct: 652 SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 70.2 bits (171), Expect = 9e-13
 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
           S     C    C H +  CD        G   C          D  +C     C   +F+
Sbjct: 177 SAFEFHCLSGECIHSSWRCD--------GGPDCKD------KSDEENCA-VATCRPDEFQ 221

Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSS 650
           CSDG CI  ++ CDR Y+C D SDE           P  FKC + +CI   
Sbjct: 222 CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 272

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 67.5 bits (164), Expect = 7e-12
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 589 INTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKC 646
           +   C  ++F+C DG CI +   CD    C D SDE    C    C+ G F C    N+C
Sbjct: 2   VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 61

Query: 647 ILSSH 651
           I    
Sbjct: 62  IPQFW 66

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 67.5 bits (164), Expect = 7e-12
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
            D + C   T CS+ +F+C DG CI     CD   +C D SDE    C +  C P  F+C
Sbjct: 78  SDEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQC 134

Query: 642 DNNKCILSSH 651
           +++ CI    
Sbjct: 135 NSSTCIPQLW 144

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 546 CAKTPCRHLNGNCDDICK-LDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGM 604
           C  + C      CD+     D + +    C    V   D+  C      S  +F C  G 
Sbjct: 134 CNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC------SAFEFHCLSGE 187

Query: 605 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
           CI  +  CD   +C DKSDE    CA+  CRP  F+C +  CI  S 
Sbjct: 188 CIHSSWRCDGGPDCKDKSDEE--NCAVATCRPDEFQCSDGNCIHGSR 232

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 31/120 (25%), Positives = 39/120 (32%), Gaps = 23/120 (19%)

Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
           S +   C    C      CD              C  G     D  SC + T C    F+
Sbjct: 89  SQDEFRCHDGKCISRQFVCDSDRD----------CLDG----SDEASCPVLT-CGPASFQ 133

Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDE--------GILYCAMRDCRPGYFKCDNNKCILSSH 651
           C+   CIP    CD   +C D SDE         +       C    F C + +CI SS 
Sbjct: 134 CNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSW 193

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  206 bits (525), Expect = 2e-57
 Identities = 92/388 (23%), Positives = 168/388 (43%), Gaps = 26/388 (6%)

Query: 243 NNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN 301
           +   C++LC+       C C  G  +    K+C    +       NR +   MT      
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 416

Query: 302 SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----RVLLERQG 356
           +          ++N++ L  +     +++SD+ +  I S   + ++       V+     
Sbjct: 417 TSL-----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471

Query: 357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRI 416
           + +GLA +++H+ +YWT +   T++  D    K + +         KPR I +D     +
Sbjct: 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFM 528

Query: 417 YWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY 476
           YWT+W +    I++   +G    S++T +I  PN + LD  + +L+W D++L  I   D 
Sbjct: 529 YWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587

Query: 477 DGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
           +G NR  I+  +    HPF +AV+ + +FWTD +  A+  AN+ TG +V  L +N+  P 
Sbjct: 588 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 647

Query: 535 GIVAISDNLDACAKTPCRHL---NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRS 586
            +V   +         C      NG C  +C         + +  C+C  G +L  D RS
Sbjct: 648 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 707

Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDR 614
           C      +    + S  + +  + T  R
Sbjct: 708 CLTEAEAAVATQETST-VRLKVSSTAVR 734

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  143 bits (361), Expect = 6e-36
 Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 62/312 (19%)

Query: 47  PVKGKMFWSNVTKQVVTIEMAFMDG----TKRETVVSQKKYPAVTACNLHIAVDWIAQNI 102
               +++WS+++++   I    +D     +  +TV+S+            +AVDWI  NI
Sbjct: 433 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-----GLAVDWIHSNI 485

Query: 103 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 162
           YW+D     + VA   G  R  L      +P A+ VDP  G+++W++ G    I + GL+
Sbjct: 486 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545

Query: 163 GKKQTILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVST 212
           G     L  E I     ITLDL          K  S    +++ GN   I          
Sbjct: 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 605

Query: 213 ISMKPYGDSY------------------------------LKDIKIYSKDAQ-TGTNPC- 240
            S+  + D                                 +D+ ++    Q  G N C 
Sbjct: 606 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCE 665

Query: 241 --GVNNGGCAELCLY------NGVSAVCACAHGVV-AQDGKSCSEYDAFIMYSRVNRIDS 291
              ++NGGC  LCL       +     CAC  G++ A+D +SC       + ++      
Sbjct: 666 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVR 725

Query: 292 IHMTDKSDLNSP 303
           + ++  +     
Sbjct: 726 LKVSSTAVRTQH 737

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 75.3 bits (184), Expect = 3e-14
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 572 CSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAM 631
                   L+       +   C  ++F+C DG CI +   CD    C D SDE    C  
Sbjct: 5   LRWTVA--LLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62

Query: 632 RDCRPGYFKCDN--NKCILSSH 651
             C+ G F C    N+CI    
Sbjct: 63  VTCKSGDFSCGGRVNRCIPQFW 84

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 15/106 (14%)

Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
           C    C H +  CD        G   C          D  +C + T C   +F+CSDG C
Sbjct: 201 CLSGECIHSSWRCD--------GGPDCKD------KSDEENCAVAT-CRPDEFQCSDGNC 245

Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
           I  ++ CDR Y+C D SDE           P  FKC + +CI    
Sbjct: 246 IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDK 291

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 71.8 bits (175), Expect = 3e-13
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 546 CAKTPCRHLNGNCDDI--CKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
           C  + C      CD+   C+ D + +    C    V   D+  C      S  +F C  G
Sbjct: 152 CNSSTCIPQLWACDNDPDCE-DGSDEWPQRCRGLYVFQGDSSPC------SAFEFHCLSG 204

Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
            CI  +  CD   +C DKSDE    CA+  CRP  F+C +  CI  S 
Sbjct: 205 ECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHGSR 250

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
            D + C   T CS+ +F+C DG CI     CD   +C D SDE    C +  C P  F+C
Sbjct: 96  SDEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQC 152

Query: 642 DNNKCILSSH 651
           +++ CI    
Sbjct: 153 NSSTCIPQLW 162

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 64.1 bits (155), Expect = 8e-11
 Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
           C    C      C D   +      VC      +   D  SC + T C    F+C+   C
Sbjct: 101 CPPKTCSQDEFRCHDGKCISRQF--VCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTC 157

Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAM--------RDCRPGYFKCDNNKCILSSH 651
           IP    CD   +C D SDE    C            C    F C + +CI SS 
Sbjct: 158 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSW 211

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 546 CAKTPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMEDNRSCT-INTVCSEHDFKCSDG 603
           CA   CR     C D  C     G   C        M D   C  +      + FKC  G
Sbjct: 228 CAVATCRPDEFQCSDGNC---IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG 284

Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
            CI  ++ C+   +C D SDE I  C   +C      C
Sbjct: 285 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGC 322

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 86.7 bits (214), Expect = 9e-19
 Identities = 30/259 (11%), Positives = 80/259 (30%), Gaps = 26/259 (10%)

Query: 272 KSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR----NSTMMKNIIELSYDYKRKT 327
              +    ++ Y R N       T  S   +    I+     ST++     +        
Sbjct: 58  MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNY 117

Query: 328 LFY---SDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID 384
           ++Y         ++  +  +G   + +     +           Y Y+    +  + + D
Sbjct: 118 IYYLHYDTQTATSLYRIRIDGEEKKKIK----NHYLFTCNTSDRYFYYNNPKNGQLYRYD 173

Query: 385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT 444
             S              +  + + +D  D+ +Y+ + N    +I     +      +   
Sbjct: 174 TASQSEALFY-----DCNCYKPVVLD--DTNVYYMDVNRD-NAIVHVNINNPNPVVLTEA 225

Query: 445 DITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFW 504
           +I   N     + +   +        +     DGT    L+K       ++ V  +++++
Sbjct: 226 NIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEF---CNINVTSQYVYF 278

Query: 505 TDWVIHAVLRANKYTGEEV 523
           TD+V +     +    + +
Sbjct: 279 TDFVSNKEYCTSTQNPDTI 297

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 20/239 (8%), Positives = 75/239 (31%), Gaps = 22/239 (9%)

Query: 2   FIAVSSPTQSKIVVCNLEGEYQTTI--LSNESNDTSTLSKISSIAVWPVKGKMFWSN-VT 58
           ++        KI         + ++  +    + ++ L     I    +   +++ +  T
Sbjct: 66  YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDT 125

Query: 59  KQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT 118
           +   ++    +DG +++ + +   +            +   +  Y+++PK   +      
Sbjct: 126 QTATSLYRIRIDGEEKKKIKNHYLFT----------CNTSDRYFYYNNPKNGQLYRYDTA 175

Query: 119 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 178
            Q   +       +P  L        +++ +  +   I    ++     +L +  I    
Sbjct: 176 SQSEALFYDCNCYKPVVLD----DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY- 230

Query: 179 DITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT 237
           ++   L F+           + ++     +    ++   + +  +    +Y  D  +  
Sbjct: 231 NVYGSLIFYQR---GGDNPALCVVKNDG-TGFKELAKGEFCNINVTSQYVYFTDFVSNK 285

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 326 KTLFYSDIQK-GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID 384
             +F+S+    G + ++  +GSN   L     +   +      NY+Y+  NN+  I    
Sbjct: 26  GEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DTAMYINA--DKNYVYYVRNNNQKITSQT 81

Query: 385 LDSPKAQRIVVVRLGQHDK-----PRGIDIDSCDSRIYWTNWN-SHLPSIQRAFFSGFGT 438
             S     +  ++   H          I      + IY+ +++     S+ R    G   
Sbjct: 82  FFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK 141

Query: 439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
           + I    +        +      ++ + +  ++ R D    +  +    +   P    + 
Sbjct: 142 KKIKNHYLF-----TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPV--VLD 194

Query: 499 GEFIFWTDWVIHAVLRANKYTGEEVYTL 526
              +++ D      +            L
Sbjct: 195 DTNVYYMDVNRDNAIVHVNINNPNPVVL 222

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 18/180 (10%), Positives = 57/180 (31%), Gaps = 18/180 (10%)

Query: 308 RNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVH 367
                +KN    + +   +  +Y++ + G +        +  +  +       +  +   
Sbjct: 139 EEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDD--- 195

Query: 368 NYLYWT-CNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP 426
             +Y+   N D  I  +++++P    +         +      +   S I++       P
Sbjct: 196 TNVYYMDVNRDNAIVHVNINNPNPVVLT--------EANIEHYNVYGSLIFYQR-GGDNP 246

Query: 427 SIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK 486
           ++      G G + +   +    N  +     + +++ D   +K         + I   +
Sbjct: 247 ALCVVKNDGTGFKELAKGEFCNINVTS-----QYVYFTDFVSNKEYCTSTQNPDTIKALQ 301

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 38/323 (11%), Positives = 93/323 (28%), Gaps = 50/323 (15%)

Query: 87  TACNLHIAVDWIAQN--IYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG 143
           TA NL+ A  +   +  +++S+      +    + G   + L +          ++ +  
Sbjct: 11  TAGNLYNAGLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKN 65

Query: 144 YLFWSESGKIPL------------IARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFY 191
           Y+++  +    +            + R   +G   T+L  +  +    I      +   Y
Sbjct: 66  YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLI--GNYIYYLHY 123

Query: 192 RNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELC 251
              +  +++ I +         +   +  +       Y+             +   A   
Sbjct: 124 DTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183

Query: 252 LYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST 311
             N    V                  D  + Y  VNR ++I   + ++         N  
Sbjct: 184 DCNCYKPVVL---------------DDTNVYYMDVNRDNAIVHVNINN--------PNPV 220

Query: 312 MMKNIIELSYDYKRKTLFYS-DIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYL 370
           ++       Y+     +FY        +  V  +G+  + L +  G    +       Y+
Sbjct: 221 VLTEANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK--GEFCNINV--TSQYV 276

Query: 371 YWTCNNDATINKIDLDSPKAQRI 393
           Y+T             +P   + 
Sbjct: 277 YFTDFVSNKEYCTSTQNPDTIKA 299

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 75.4 bits (186), Expect = 4e-17
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
           CS+ +F+C DG CI     CD   +C D SDE    C +  C P  F+C+++ CI    
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSSTCIPQLW 59

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
            D  SC + T C    F+C+   CIP    CD   +C D SDE
Sbjct: 32  SDEASCPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 73

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
           C  + F C+ G CIP + TCD   +C D+SDE              F C+N +CI  + 
Sbjct: 5   CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           C   T      F C++G CI  N  CD   +C D SDE
Sbjct: 40  CAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 539 ISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDF 598
           + +  +    T   H+    DD        + +    + +  +E+    +    C EH+ 
Sbjct: 10  LIERTNKI-TTSISHVESLLDDRLD----PKRIRKAGSLRHRVEELEDPS----CDEHEH 60

Query: 599 KCS--DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCI 647
           +C   D  CI     CD   +C +  DE    C +       F  D   + C 
Sbjct: 61  QCGGDDPQCISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDVCFDHCT 111

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMR 632
           +  CS   FKC+ G CIP + TCD   +C D SDE    C  +
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 553 HLNGNCDDIC-KLDETGQVVCSCFTGKVLMEDNRSCTI-NTVCSEHDFKC--SDGMCIPF 608
            L+   + +  KLDE  ++    F  ++   D R   I  T C +  F+C  ++  CI  
Sbjct: 14  RLDRIIEKLRTKLDEAEKIDPEHFVSEI---DARVTKIEGTHCEKRTFQCGGNEQECISD 70

Query: 609 NQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
              CD   +CH+  DE    C     + G    
Sbjct: 71  LLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFS 103

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 554 LNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC--SDGMCIPFNQT 611
           L     DI +            T + L     +   +  C EH+ +C      CI     
Sbjct: 16  LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH-CDEHESECRGDVPECIHDLLF 74

Query: 612 CDRVYNCHDKSDEGILYCAMRDCRPG---YFKCDNNKCI 647
           CD   +C D SDE    C++     G           C 
Sbjct: 75  CDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCE 113

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 524 YTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSC--FTGKVLM 581
           +    + +R   +  +S N   C    CR   G    + +   T +       F   V  
Sbjct: 141 FQQGADTQRRFKLSDLSINSTECLHVHCR---GLETSLAECTFTKRRTMGYQDFADVVCY 197

Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
                        +  F+C +G  I   + CD + +C D+SDE  L C  + C+   F C
Sbjct: 198 TQKADS-----PMDDFFQCVNGKYISQMKACDGINDCGDQSDE--LCC--KACQGKGFHC 248

Query: 642 DNNKCI 647
            +  CI
Sbjct: 249 KSGVCI 254

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA 630
           C   +F C++  CI     CD   +C D SDE    C 
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 13/54 (24%), Positives = 18/54 (33%)

Query: 548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCS 601
           +  C + NG C+  C      +  C C  G  L+ D  SCT             
Sbjct: 5   QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 58

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 238 NPCGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
             C   NGGC + C  + G    C C  G  +  DG SC+    +
Sbjct: 6   LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C ++NGGC + C        C+CAHG V+  D KSC   + F
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
           C   NG CD  C  +E  +V CSC  G VL +D++SC       
Sbjct: 1   CSLDNGGCDQFC-REERSEVRCSCAHGYVLGDDSKSCVSTERFP 43

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
           C   NG C+  CK     +VVCSC  G  L E+ +SC          F C
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE-----PAVPFPC 46

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHGVV-AQDGKSCSEYDAF 280
           C + NG C + C  +     VC+C  G   A++ KSC     F
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 6/63 (9%)

Query: 590 NTVCSEHDFKC-SDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN-NKCI 647
              C    F C    +C+P    CD   +C D +DE     A   C        + +   
Sbjct: 6   GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE--SIAA--GCLYNSTGSGSGSGST 61

Query: 648 LSS 650
              
Sbjct: 62  EEL 64

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           CS  +F C  G CI  +  CD   +C DKSDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
           C + NG C+  C      +  C C  G  L+ D  SCT        ++ C
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT-----PTVEYPC 46

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C   NGGC + C  + G    C C  G  +  DG SC+    +
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C ++NG C + C     S VC+CA G  +A +GK+C     +
Sbjct: 4   CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
           C   NG+CD  C  +E   VVCSC  G  L ++ ++C       
Sbjct: 4   CSLDNGDCDQFC-HEEQNSVVCSCARGYTLADNGKACIPTGPYP 46

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
                 C +  F+C +  CIP    CD   +C D SDE
Sbjct: 2   SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 10/176 (5%)

Query: 370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ 429
           +++T  N   I +I       +        +   P  I + S D+ +++T   ++  +I 
Sbjct: 112 IWFTEMNGNRIGRIT---DDGKIREYELPNKGSYPSFITLGS-DNALWFTENQNN--AIG 165

Query: 430 RAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISP 489
           R   SG  TE  I T  + P  +   +  + L++ +   +KI R    G           
Sbjct: 166 RITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPN 224

Query: 490 LHPFDMAV--YGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNL 543
             P  +      + +++T+W  + + R       E Y ++     P GI    + +
Sbjct: 225 ARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETI 279

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 9/147 (6%)

Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG--TESIITTDITMPNALALDH 456
            Q   P GI +     +++ T   ++   I     +  G  TE  + T       L +  
Sbjct: 12  NQDTGPYGITVSD-KGKVWITQHKAN--MISC--INLDGKITEYPLPTPDAKVMCLTISS 66

Query: 457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE-FIFWTDWVIHAVLRA 515
              ++++ +   +KI R    G  +          P+ +       I++T+   + + R 
Sbjct: 67  D-GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRI 125

Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDN 542
                   Y L      P  I   SDN
Sbjct: 126 TDDGKIREYELPNKGSYPSFITLGSDN 152

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 593 CSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
           C+   FKC+DG  CI     CD VY+C D SDE
Sbjct: 7   CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 593 CSEHDFKC-SDGMCIPFNQTCDRVYNCHDKSDE 624
           C   +F+C  DG+CIP    CD   +C D SDE
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 80/516 (15%), Positives = 149/516 (28%), Gaps = 147/516 (28%)

Query: 69  MDGT-KRETVVSQKKYPAVTACNLHIAVDWIAQNIYW------SDPKENVIEVARLTGQY 121
           + G+ K  T V      A+  C  +     +   I+W      + P+  +  + +L  Q 
Sbjct: 158 VLGSGK--TWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 122 RYVLISGGVDQPSALAVDPESGY-----LFWSESGKIPLIARAGLDGKKQTILAQEIIMP 176
                S   D  S + +   S       L  S+  +  L+    L               
Sbjct: 210 DPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LL-------------- 251

Query: 177 IKDITLDLKFFSAFYRNLS---------KGNIHIISLSNLSDVSTISM-KPYGDSYLKDI 226
             ++  + K ++AF  NLS         K     +S +  + +S            +K +
Sbjct: 252 --NVQ-NAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 227 --KIYSKDAQT------GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
             K      Q        TNP  +     AE                   +DG +  +  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL--SIIAESI-----------------RDGLATWDN- 346

Query: 279 AFIMYSRVNRIDSIHMTDKSDLN--SPFESIRNSTMMKNIIELSYDYKRKTL--FYSDIQ 334
               +  VN  D +    +S LN   P E  R      ++   S       L   + D+ 
Sbjct: 347 ----WKHVN-CDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 335 KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYW----TCNNDATINKIDLDSPKA 390
           K  +  V  N  +   L+E+Q   +      + + +Y        N+  +++  +D    
Sbjct: 401 KSDVMVV-VNKLHKYSLVEKQP--KESTI-SIPS-IYLELKVKLENEYALHRSIVDH--- 452

Query: 391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS-HLPSIQRA-FFSGFGTESIITTDITM 448
                  + +      +     D   Y+ +    HL +I+     + F            
Sbjct: 453 -----YNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLF------------ 493

Query: 449 PNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWV 508
              + LD       + +    KI    +D T       I       +  Y  +I   D  
Sbjct: 494 -RMVFLD-----FRFLEQ---KIR---HDSTAWNASGSILNTLQ-QLKFYKPYICDND-- 538

Query: 509 IHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLD 544
                   KY    V  +   + +    +  S   D
Sbjct: 539 -------PKYE-RLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 9e-06
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 49/206 (23%)

Query: 52  MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLH-IAVDWIAQNIYWSDPKEN 110
           + W +V K  V   M  ++   + ++V  +K P  +  ++  I ++   +        EN
Sbjct: 394 LIWFDVIKSDV---MVVVNKLHKYSLV--EKQPKESTISIPSIYLELKVKL-------EN 441

Query: 111 VIEV-ARLTGQYRYVLISGGVDQPSALAVDPESGYLFW---------SESGKIPLIARAG 160
              +   +   Y    I    D    L       Y +              ++ L     
Sbjct: 442 EYALHRSIVDHYN---IPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 161 LD-----GK-KQTILAQEIIMPIKDITLDLKFFSAFY---------------RNLSKGNI 199
           LD      K +    A      I +    LKF+  +                  L K   
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 200 HIISLSNLSDVSTISMKPYGDSYLKD 225
           ++I  S  +D+  I++    ++  ++
Sbjct: 558 NLIC-SKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 68/467 (14%), Positives = 139/467 (29%), Gaps = 118/467 (25%)

Query: 122 RYVLISGGVD----QPSALAVDPESG--YLFWSESGKIPLIARAGLDGKKQT---ILAQE 172
           + +L    +D           D  SG   LFW+   K   + +  ++   +     L   
Sbjct: 43  KSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 173 IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLS---DVSTISMKPYGDSYLKDIKIY 229
           I    +  ++  + +    R+    +  + +  N+S       +          K++ I 
Sbjct: 98  IKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 230 SKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQ-DGK-------SCSEYDAFI 281
                      GV   G  +  +      VC  ++ V  + D K       +C+  +  +
Sbjct: 157 -----------GV--LGSGKTWV---ALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 282 -----MYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
                +  +++   +      S++     SI+    ++ +++    Y+   L   ++Q  
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSK-PYENCLLVLLNVQNA 256

Query: 337 TINSVFFNGSNHRVLL-ERQGSV-----EGLAYEYVHNYLYWTCNNDAT-------INKI 383
              + F      ++LL  R   V              ++   T   D         ++  
Sbjct: 257 KAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 384 DLDSPK-AQRIVVVRLGQHDKPRGIDI--DSC-DSRIYWTNWN---------------SH 424
             D P+               PR + I  +S  D    W NW                + 
Sbjct: 315 PQDLPREVLTT---------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 425 L-PSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV 483
           L P+  R  F      S+      +P  L L      L W D     I+       N++ 
Sbjct: 366 LEPAEYRKMFDRL---SVFPPSAHIPTIL-L-----SLIWFD----VIKSDVMVVVNKLH 412

Query: 484 LSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI 530
              +    P +  +           I ++    K   E  Y L ++I
Sbjct: 413 KYSLVEKQPKESTIS----------IPSIYLELKVKLENEYALHRSI 449

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 590 NTVCSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
              C    F C    +C+P    CD   +C D +DE
Sbjct: 4   GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 590 NTVCSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
           +  CS   F C +   C+P    C+ V +C +++DE
Sbjct: 4   DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 590 NTVCSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDE 624
              C    F+CS+     G C P +  CD   +C D  DE
Sbjct: 4   FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 590 NTVCSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDE 624
           ++ C    F+CS+     G C P +  CD   +C D  DE
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 593 CSEHDFKCSDG--MCIPFNQTCDRVYNCHDKSDE 624
           C  H+  C      CIP +  CD   +C    DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	652
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	100.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.79
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.75
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.46
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.46
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.39
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.35
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.34
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.32
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.3
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.19
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.18
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.12
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.04
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.04
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.02
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.01
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.0
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.98
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.97
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.95
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.94
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.94
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.92
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.92
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.91
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.91
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.89
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.89
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.88
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.88
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.83
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.8
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.77
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.76
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	98.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.74
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.7
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.69
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.68
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.61
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	98.59
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.58
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.57
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.53
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.52
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.48
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.48
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.47
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.46
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.42
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.4
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.39
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.38
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.38
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.36
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.36
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.35
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.34
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.28
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.24
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.14
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.13
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.08
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.08
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.02
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.02
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.01
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.01
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.98
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.92
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.84
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.71
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.66
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.5
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.49
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.33
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.3
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.27
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.22
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.2
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.16
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.16
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.09
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.98
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.97
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	96.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.96
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	96.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.9
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.9
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	96.88
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.84
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.81
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.81
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.79
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.79
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.76
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.67
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.66
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.58
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.56
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.55
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.54
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.5
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.43
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.38
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.34
1szb_A	170	Mannose binding lectin-associated serine protease-	96.24
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.18
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.17
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.17
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.09
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.05
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.01
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.97
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	95.93
2xrc_A	565	Human complement factor I; immune system, hydrolas	95.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.82
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.81
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.8
2m0p_A	52	Low-density lipoprotein receptor-related protein;	95.79
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.74
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	95.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.67
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.64
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.53
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.53
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	95.51
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.49
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.49
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.43
1nzi_A	159	Complement C1S component; calcium, innate immunity	95.4
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	95.39
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	95.36
1szb_A	170	Mannose binding lectin-associated serine protease-	95.33
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.27
2vh0_B	134	Activated factor XA light chain; serine protease,	95.27
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	95.26
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.2
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.12
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.11
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	95.09
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	95.04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.03
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	95.02
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	95.01
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.95
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	94.93
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	94.87
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	94.87
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.81
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.68
3a7q_B	44	Low-density lipoprotein receptor-related protein;	94.48
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.41
2vh0_B	134	Activated factor XA light chain; serine protease,	94.23
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.22
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	94.21
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	94.21
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.14
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.1
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	94.09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	94.05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	94.02
1nzi_A	159	Complement C1S component; calcium, innate immunity	93.83
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.81
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	93.81
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	93.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.71
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	93.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.66
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.63
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	93.57
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.55
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	93.43
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.43
3jro_A	753	Fusion protein of protein transport protein SEC13	93.14
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	93.08
3jro_A	753	Fusion protein of protein transport protein SEC13	93.03
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	92.65
1cr8_A	42	Protein (LOW density lipoprotein receptor related	92.63
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	92.41
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	92.28
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	92.23
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	92.21
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.12
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.02
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	91.91
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	91.7
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	91.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	91.47
3v9f_A	781	Two-component system sensor histidine kinase/RESP	91.2
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	91.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.06
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.52
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	90.31
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	90.3
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	90.1
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	89.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	89.49
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	89.28
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	89.22
4a2l_A	795	BT_4663, two-component system sensor histidine kin	89.19
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	89.12
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	88.72
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	88.59
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.5
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	88.43
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	88.41
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	88.37
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	88.27
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	87.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	87.83
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	87.57
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	87.39
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	87.33
2bou_A	143	EGF-like module containing mucin-like hormone rece	87.07
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	86.9
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.62
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	86.51
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	86.15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	85.26
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	84.98
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	84.86
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	84.64
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	84.46
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	84.26
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	84.17
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	84.11
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	83.99
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	83.97
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	83.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	83.29
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	83.08
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	82.63
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	82.62
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	82.49
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	82.41
2bou_A	143	EGF-like module containing mucin-like hormone rece	82.15
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	81.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	81.11
2pm7_B	297	Protein transport protein SEC13, protein transport	80.67
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	80.66
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	80.23

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=1.5e-99  Score=859.25  Aligned_cols=563  Identities=28%  Similarity=0.523  Sum_probs=492.1

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      |++++  ....|+++++++......++.     ..++.|.+||||+.+++|||+|  ...++|+|++++|+..++++..+
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~~-----~~~~~~~~l~~d~~~~~lywtD--~~~~~I~r~~~~g~~~~~v~~~g   78 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVAIPL-----TGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFG   78 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEECCC-----CSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEE--eCCcEEEEECCCCCcceEEEc-----CCCCceEEEEEECCCCEEEEEE--CCCCeEEEEECCCCCcEEEEeCC
Confidence            67777  478999999998766665553     2578999999999999999999  88899999999999999999988


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       +..|.    ||||||.+++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+|++|
T Consensus        79 -~~~P~----GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A           79 -LDYPE----GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             -CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             -CCCcc----eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence             88899    9999999999999999999999999999999999988899999999999999999999988899999999


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEe----------CCCCcEEEEEecCCCCceEEE-----------------
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRN----------LSKGNIHIISLSNLSDVSTIS-----------------  214 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d----------~~g~~~~~i~~~~~~~~~~~~-----------------  214 (652)
                      ||+.+++++. .+.+|+||++|+.+++|||+|          ++|+.++ ++.....+|..++                 
T Consensus       154 dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav~~~~ly~tD~~~~~I~  231 (628)
T 4a0p_A          154 DGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIE  231 (628)
T ss_dssp             TSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             CCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEEECCEEEEecCCCCEEE
Confidence            9999998875 689999999999999999954          5665554 3332222222211                 


Q ss_pred             ------------eecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecC-CCceEEEeCCc-cccCCCcccccceE
Q psy5768         215 ------------MKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNG-VSAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       215 ------------~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~-~~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                                  +..++ ..|++|+|||+.+|.+.|||..+||+|+|+|++.+ ++|+|+|+.|| |.+|+++|..+++|
T Consensus       232 ~~dk~tg~~~~~l~~~~-~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~  310 (628)
T 4a0p_A          232 RANKTSGQNRTIIQGHL-DYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF  310 (628)
T ss_dssp             EEETTTCCSCEEEECSC-CSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred             EEECCCCCceEEEecCC-CCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence                        11122 36899999999999999999999999999999888 68999999998 66899999999999


Q ss_pred             EEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-e------
Q psy5768         281 IMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-E------  353 (652)
Q Consensus       281 Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~------  353 (652)
                      |+|+++..|+++.+ +......  ..+ ...+++++.||+||+.+++|||+|...++|+++.++|+..+.++ +      
T Consensus       311 Ll~s~~~~i~~i~l-~~~~~~~--~~l-~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~  386 (628)
T 4a0p_A          311 LLFSQKSAINRMVI-DEQQSPD--IIL-PIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQN  386 (628)
T ss_dssp             EEEEETTEEEEECC-CTTCCCC--EEC-CCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------
T ss_pred             eeeeccceEEEEec-ccccCce--EEE-EehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEccccccc
Confidence            99999999999998 4433211  112 12457889999999999999999999999999999998876666 4      


Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      ++..|+|||+||++++|||||...++|++++++|.   .+.++....+.+|++|||||.+|+||||||+...++|+|+.|
T Consensus       387 ~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~---~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~  463 (628)
T 4a0p_A          387 LEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR---SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL  463 (628)
T ss_dssp             -CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET
T ss_pred             ccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC---eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC
Confidence            46789999999999999999999999999999875   333444467899999999999999999999976459999999


Q ss_pred             cCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEE
Q psy5768         434 SGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVL  513 (652)
Q Consensus       434 dG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~  513 (652)
                      ||+++++++..++.+|+||++|+.+++|||+|++.++|+++++||++|+++....+.||+||++++++||||||.+++|+
T Consensus       464 dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~  543 (628)
T 4a0p_A          464 DGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIE  543 (628)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEE
Confidence            99999999998899999999999999999999999999999999999999987778999999999999999999999999


Q ss_pred             EEEccCCceEEEEecccCCcceeEEEeccCC-CCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         514 RANKYTGEEVYTLRKNIRRPMGIVAISDNLD-ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       514 ~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~-~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +++|.+|+..+++...+..|++|++++...+ +...|||..+||+|+|+|++.|.+.++|+||+||+|.+| ++|..
T Consensus       544 ~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~~~~  620 (628)
T 4a0p_A          544 KIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG  620 (628)
T ss_dssp             EEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECTTSCEEEECCTTEEECTTSSCEEE
T ss_pred             EEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCCCCCeeeeCCCCCEECCCCCcCCC
Confidence            9999999999999988889999999985432 335699999999999999999988899999999999999 88864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=4.9e-97  Score=838.10  Aligned_cols=556  Identities=28%  Similarity=0.573  Sum_probs=474.8

Q ss_pred             CCCeEEEEecCCCee-EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEEEeCCCcCCc
Q psy5768           9 TQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETVVSQKKYPAV   86 (652)
Q Consensus         9 ~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v~~~~~~~~p   86 (652)
                      +...|+++++++... .++..      ..++.|.+||||+.+++|||+|  ...++|+|+.++|+. .++++..+ +..|
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~------~~~~~~~~ld~~~~~~~ly~sD--~~~~~I~r~~~~g~~~~~~v~~~~-~~~P   86 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVV------GGLEDAAAVDFVFSHGLIYWSD--VSEEAIKRTEFNKTESVQNVVVSG-LLSP   86 (619)
T ss_dssp             CSSBEEEECCC---------C------BCCSCEEEEEEETTTTEEEEEE--TTTTEEEEEEC-----CEEEECSS-CSCE
T ss_pred             ccccEEEEeCCCCcceEEEEE------cCCCceEEEEEEeCCCEEEEEE--CCCCeEEEEEccCCCceEEEEeCC-CCCc
Confidence            578999999998642 22222      2678999999999999999999  888999999999985 47788888 8899


Q ss_pred             cCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc
Q psy5768          87 TACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ  166 (652)
Q Consensus        87 ~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~  166 (652)
                      +    |||+||++++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+|++|||+.+
T Consensus        87 ~----GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           87 D----GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             E----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             C----eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            9    999999999999999999999999999999999998889999999999999999999999889999999999999


Q ss_pred             EEEEeecccCceeEEEeccCCEEEEEe----------CCCCcEEEEEecCCCCceE------------------EEeec-
Q psy5768         167 TILAQEIIMPIKDITLDLKFFSAFYRN----------LSKGNIHIISLSNLSDVST------------------ISMKP-  217 (652)
Q Consensus       167 ~~~~~~~~~~p~gl~lD~~~~~ly~~d----------~~g~~~~~i~~~~~~~~~~------------------~~~~~-  217 (652)
                      .+++...+.+|+|||+|+.+++|||+|          ++|+.++.+......+|..                  ..+.. 
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESS
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECC
Confidence            999988899999999999999999955          5555554443211111111                  11111 


Q ss_pred             ---------CCCCCcceeeeeeeccC-CCCCCCCCCCCCCcccceecCC--CceEEEeCCc-cccCCCccc-ccceEEEE
Q psy5768         218 ---------YGDSYLKDIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGV--SAVCACAHGV-VAQDGKSCS-EYDAFIMY  283 (652)
Q Consensus       218 ---------~~~~~~~~i~v~~~~~q-~~~n~C~~~ng~Cs~lC~~~~~--~~~C~C~~G~-l~~dg~~C~-~~~~~Ll~  283 (652)
                               .....|++|++||+.+| ...|||..+||+|||+|++.+.  +|+|+||.|| |..|+++|. .+++||+|
T Consensus       243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~  322 (619)
T 3s94_A          243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL  322 (619)
T ss_dssp             SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred             CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence                     11136899999999999 4899999999999999998764  7999999998 678999999 47899999


Q ss_pred             eeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeE
Q psy5768         284 SRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLA  362 (652)
Q Consensus       284 s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glA  362 (652)
                      +.+..|++++| +..+.+.   ......++.++.||+||+.+++|||+|...++|+|+.++|+..++++ .++..|.|||
T Consensus       323 ~~~~~i~~i~l-~~~~~~~---~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA  398 (619)
T 3s94_A          323 ARRTDLRRISL-DTPDFTD---IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA  398 (619)
T ss_dssp             EESSCEEEEES-SSTTCCC---EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EcccceEEEec-CCCccce---eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence            99999999999 5544331   11122456889999999999999999999999999999998888777 6788999999


Q ss_pred             EEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE
Q psy5768         363 YEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII  442 (652)
Q Consensus       363 vDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~  442 (652)
                      +||++++|||||...++|++++++|..  +++++ ...+..|++|||||.+|+||||||+.. ++|+|+.|||+++++++
T Consensus       399 vD~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~-~~~l~~P~~iavdp~~G~ly~tD~g~~-~~I~r~~~dG~~~~~l~  474 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDRIEVTRLNGTM--RKILI-SEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLV  474 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS--CEEEE-CTTCCSEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEE
T ss_pred             EecccCcEEEEeCCCCcEEEEeCCCCe--EEEEE-ECCCCCeeeEEEEcCCCcEEEecCCCC-CEEEEEccCCCccEEEE
Confidence            999999999999999999999998864  44444 467899999999999999999999863 69999999999999999


Q ss_pred             EcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCce
Q psy5768         443 TTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       443 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      ...+.+|+|||+|+.+++|||+|++.++|++++++|+.++++....+.+|+||++++++||||||.+++|++++|.+| .
T Consensus       475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~  553 (619)
T 3s94_A          475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-E  553 (619)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-C
T ss_pred             eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-c
Confidence            888999999999999999999999999999999999999999887789999999999999999999999999999999 5


Q ss_pred             EEEEecccCCcceeEEEeccCCCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         523 VYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       523 ~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      .+++..++..|++|++++...|+ ..|||..+||+|+|+|++.|.+ ++|+||+||.|.+| ++|.+
T Consensus       554 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~C~~~ng~C~~~C~~~~~~-~~C~C~~g~~l~~d~~~C~~  618 (619)
T 3s94_A          554 REVIIDQLPDLMGLKATNVHRVI-GSNPCAEENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIV  618 (619)
T ss_dssp             EEEEECSCCCEEEEEEEESSCCC-CCCGGGSGGGGCSSEEEEETTE-EEEECCTTCEECSSTTCEEC
T ss_pred             eEEEecCCCCCceeeeccccccc-ccccCCCCCCChhHhhccCCCC-eEEECCCCCEECCCCCcCCC
Confidence            57777788899999999876555 6799999999999999999885 99999999999999 89975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=5.1e-62  Score=516.12  Aligned_cols=338  Identities=28%  Similarity=0.579  Sum_probs=296.1

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc--ccceEEEEeeecceeEEecCCCCCCCCCceeeeecccc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS--EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMM  313 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~--~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~  313 (652)
                      +|||. .|++|+|+|++.+++|+|.|+.|| |..|+++|.  .+++||+|++.+.|+++++ ++....    .+  ...+
T Consensus         1 i~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~I~~i~~-~g~~~~----~~--~~~~   72 (349)
T 3v64_C            1 VNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP-HRSEYT----LL--LNNL   72 (349)
T ss_dssp             ---------CCSSEECCC---CCEECCTTEEECTTSSCEEESSSCCEEEEECBSCEEEECT-TSCCEE----EE--ECSC
T ss_pred             CcccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCcccccccCceeEeecccceEEEeC-CCCeeE----Ee--ecCC
Confidence            47998 689999999998889999999999 667999998  5689999999999999998 554322    22  1345


Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      .++.+++||+.+++|||+|...++|++++++|+..+.++ .++..|.|||+||.+++|||+|...++|.+++++|..  +
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--R  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--C
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--e
Confidence            779999999999999999999999999999998877776 6788999999999999999999999999999998864  3


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIE  472 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  472 (652)
                      .. +....+..|++|||||..|+||||||+.. ++|+|+.|||+.+++++...+.+|+||++|+.+++|||+|...++|+
T Consensus       151 ~~-l~~~~l~~P~~iavdp~~g~ly~td~~~~-~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          151 KV-LLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             EE-EECTTCSCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EE-EEeCCCCCcceEEEecCcCeEEEeccCCC-CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            43 33467899999999999999999999862 59999999999999988888999999999999999999999999999


Q ss_pred             EEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCCCCCCCCCC
Q psy5768         473 RCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCR  552 (652)
Q Consensus       473 ~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~  552 (652)
                      +++++|..+++++...+.+|+||++++++|||+||.+++|.+++|.+|+..+++...+..|++|+++|+..|+...|||.
T Consensus       229 ~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp~~~n~C~  308 (349)
T 3v64_C          229 RANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCG  308 (349)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSCCCCCTTT
T ss_pred             EEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCccccCccc
Confidence            99999999998887778999999999999999999999999999999999999988889999999999988888889999


Q ss_pred             CCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         553 HLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       553 ~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      .+||+|+||||+.|. +++|+||+||+ ..| ++|.+
T Consensus       309 ~~~g~C~~lCl~~~~-~~~C~C~~g~~-~~d~~~C~~  343 (349)
T 3v64_C          309 DNNGGCTHLCLPSGQ-NYTCACPTGFR-KINSHACAL  343 (349)
T ss_dssp             TGGGGCSSEEECCTT-SCEEECCTTEE-EETTTEEEE
T ss_pred             CCCCCcccEeecCCC-CCeeECCCCCc-CCCCCcccc
Confidence            999999999999998 69999999999 788 99986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=2.9e-59  Score=503.83  Aligned_cols=342  Identities=26%  Similarity=0.542  Sum_probs=302.5

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc--ccceEEEEeeecceeEEecCCCCCCCCCceeeeecc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS--EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST  311 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~--~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~  311 (652)
                      .++++|.. ++.|+|.|+..+++|+|.|+.|| +..++++|.  .+++||++++++.|+++++ ++....    .+  ..
T Consensus        38 ~dideC~~-~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~I~~i~l-~~~~~~----~~--~~  109 (400)
T 3p5b_L           38 EDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL-DRSEYT----SL--IP  109 (400)
T ss_dssp             EECCCCST-TSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTEEEEECT-TSCSCE----EE--EC
T ss_pred             cCchhhhc-cCCCCCccCCCccceeeeccccccccccccceeeccccceeEEeccceeEEEcc-CCccee----Ee--cc
Confidence            56899984 57899999988889999999998 557999998  5679999999999999999 554432    22  24


Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccC----CcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g----~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      .+.++.+|+||+.+++|||+|...++|+++.++|    +..+.++ .++..|.|||+||++++|||+|...++|++++++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            5688999999999999999999999999999998    3456666 5888999999999999999999999999999998


Q ss_pred             CCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                      |..  +++++ ...+..|++|||||..|+||||||+.. ++|+|+.|||+.+++++...+.+|+|||+|+.+++|||+|.
T Consensus       190 g~~--~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          190 GVK--RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TCS--EEEEE-ECSSCCEEEEEEETTTTEEEEEECSSS-CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCc--eEEEE-eCCCCCcceEEEecccCeEEEEeCCCC-CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            753  34444 467899999999999999999999864 59999999999999999888999999999999999999999


Q ss_pred             CCCeEEEEecCCCceEEEecC--CCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCC
Q psy5768         467 RLDKIERCDYDGTNRIVLSKI--SPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLD  544 (652)
Q Consensus       467 ~~~~I~~~~ldG~~~~~l~~~--~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~  544 (652)
                      ..++|++++++|..+++++..  .+.+|+||++++++|||+||.+++|++++|.+|+...++..++..|++|+++|+..|
T Consensus       266 ~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~q  345 (400)
T 3p5b_L          266 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ  345 (400)
T ss_dssp             TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGS
T ss_pred             CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccC
Confidence            999999999999999998764  378999999999999999999999999999999999999888899999999999888


Q ss_pred             CCCCCCCC---CCCCCCccccccCCCC-----ceeeeccCceeeccC-CcccC
Q psy5768         545 ACAKTPCR---HLNGNCDDICKLDETG-----QVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       545 ~~~~~~C~---~~ng~Cs~lCl~~~~~-----~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +...|||.   .+||+|+|+|++.|..     .++|+||+||+|..| ++|.+
T Consensus       346 p~~~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~C~~g~~l~~d~~~C~~  398 (400)
T 3p5b_L          346 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT  398 (400)
T ss_dssp             CCCCCSSSSSSSGGGGCSSEEEECCCSSTTCCSEEEECCTTCEECTTSSSEES
T ss_pred             CCCCCccccccCCCcCcCCeecCCCcccCCCCCeeEECCCCCEECCCCCccCC
Confidence            88889995   4689999999998753     699999999999999 89976

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-58  Score=497.02  Aligned_cols=339  Identities=28%  Similarity=0.579  Sum_probs=293.1

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc--ccceEEEEeeecceeEEecCCCCCCCCCceeeeecc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS--EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST  311 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~--~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~  311 (652)
                      .++++|. .++.|+|.|+..+++|+|.|+.|| +..|+++|.  .+++||+++.+..|+++++ ++....    .+.  .
T Consensus        42 ~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~I~~i~~-~~~~~~----~~~--~  113 (386)
T 3v65_B           42 QDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP-HRSEYT----LLL--N  113 (386)
T ss_dssp             -----------CCTTEEC-----CCEECCTTEEECTTSSCEEECSSCCEEEEECBSCEEEECT-TSCCCE----EEE--C
T ss_pred             CccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccccceeEeecCccceeecc-CCCcEE----EEe--c
Confidence            5689998 467999999988889999999998 667999998  5689999999999999998 554322    221  3


Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      .+..+.+++||+.+++|||+|...++|++++++|+..+.++ .++..|.|||+||.+++|||+|...++|++++++|.. 
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-  192 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-  192 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-
Confidence            46789999999999999999999999999999998777766 6788999999999999999999999999999998754 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDK  470 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~  470 (652)
                       +..+ ....+..|++|||||..|+||||||+.. ++|+|+.|||+.+++++...+.+|+||++|+.+++|||+|...++
T Consensus       193 -~~~l-~~~~l~~P~giavdp~~g~ly~td~~~~-~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          193 -RKVL-LWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             -CEEE-ECSSCSCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             -eEEe-ecCCCCCCcEEEEEcCCCeEEEeccCCC-CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence             3443 3467899999999999999999999862 599999999999999998889999999999999999999999999


Q ss_pred             EEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCCCCCCCC
Q psy5768         471 IERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP  550 (652)
Q Consensus       471 I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~  550 (652)
                      |++++++|..+++++...+.+|+||++++++|||+||.+++|.+++|.+|+..+++...+..|++|+++|+..|+...||
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n~  349 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNR  349 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCCT
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcCc
Confidence            99999999999988887789999999999999999999999999999999999999988899999999999888888899


Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-Cccc
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSC  587 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~  587 (652)
                      |..+||+|+||||+.|. .++|+||+||+ ..| ++|.
T Consensus       350 C~~~ng~C~~lCl~~~~-~~~C~C~~g~~-~~d~~~C~  385 (386)
T 3v65_B          350 CGDNNGGCTHLCLPSGQ-NYTCACPTGFR-KINSHACA  385 (386)
T ss_dssp             TTTSCTTSSSEEECCSS-SCEEECCTTCB-CSSSSCCB
T ss_pred             cccCCCCCCceeeeCCC-CCeeECCCCCc-CCCCCccC
Confidence            99999999999999998 69999999999 778 8886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=3e-57  Score=522.34  Aligned_cols=342  Identities=25%  Similarity=0.550  Sum_probs=301.7

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc--ccceEEEEeeecceeEEecCCCCCCCCCceeeeecc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS--EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST  311 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~--~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~  311 (652)
                      .++++|. .++.|+|+|+..+++|+|.|+.|| +..++++|.  ...++|++++...|+++.+ +..++.    .+.  .
T Consensus       350 ~dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l-~~~~~~----~l~--~  421 (791)
T 3m0c_C          350 EDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL-DRSEYT----SLI--P  421 (791)
T ss_dssp             ECCCCCS-SSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECT-TSCCCE----EEE--C
T ss_pred             ccCcccC-CCCCCCCeeecCCCCceeecCCCCEeCCCCceeeecccccccccccccceeEeec-cCCcce----eee--c
Confidence            5688998 467899999988889999999998 557899998  5678999999999999998 554432    222  3


Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCC----cceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGS----NHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~----~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      .+++++||+||+.+++|||+|...++|+++.++|.    ..++++ .++..|.||||||++++|||+|...++|++++++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            56889999999999999999999999999999984    445666 5889999999999999999999999999999998


Q ss_pred             CCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                      |..  +++++ ...+..|++|||||.+|+||||||+.. ++|+|+.|||+.+++++...+.+|+|||||+.+++|||+|+
T Consensus       502 G~~--~~~l~-~~~l~~P~gIaVDp~~g~LYwtD~g~~-~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          502 GVK--RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             SSS--EEEEE-ECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCe--EEEEE-eCCCCCcceEEEecCCCCEEEecCCCC-CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC
Confidence            864  34444 467899999999999999999999864 49999999999999999989999999999999999999999


Q ss_pred             CCCeEEEEecCCCceEEEecC--CCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCC
Q psy5768         467 RLDKIERCDYDGTNRIVLSKI--SPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLD  544 (652)
Q Consensus       467 ~~~~I~~~~ldG~~~~~l~~~--~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~  544 (652)
                      +.++|++++++|..+++++..  .+.+|+||++++++|||+||.+++|++++|.+|+.+.++..++..|++|+++|+..|
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Q  657 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ  657 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGS
T ss_pred             CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccC
Confidence            999999999999999999875  378999999999999999999999999999999999999888899999999999888


Q ss_pred             CCCCCCCCC---CCCCCccccccCCC-----CceeeeccCceeeccC-CcccC
Q psy5768         545 ACAKTPCRH---LNGNCDDICKLDET-----GQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       545 ~~~~~~C~~---~ng~Cs~lCl~~~~-----~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +...|||..   +||+|+||||++|.     ..|+|+||+||+|..| ++|.+
T Consensus       658 p~~~N~C~~~~~~ng~CshlCl~~p~~~~~~~~~~C~Cp~g~~L~~d~~tC~~  710 (791)
T 3m0c_C          658 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT  710 (791)
T ss_dssp             CCCCCTTTSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCcccccCCCCcCcCeeecCCCCcCCCCCCceeECCCCCEECCCCCcCCC
Confidence            888899986   79999999999875     2699999999999999 99986

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=7.9e-54  Score=446.77  Aligned_cols=304  Identities=30%  Similarity=0.590  Sum_probs=268.8

Q ss_pred             ccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc-eEEe-e
Q psy5768         276 EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-RVLL-E  353 (652)
Q Consensus       276 ~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~-~~i~-~  353 (652)
                      +++|||||++++.|+++++ ++....  ...+  ...+.+++|++||+.+++|||+|...++|+++.++|+.. +.++ .
T Consensus         2 g~~p~ll~~~~~~I~~i~l-~~~~~~--~~~~--~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~   76 (318)
T 3sov_A            2 GSAPLLLYANRRDLRLVDA-TNGKEN--ATIV--VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS   76 (318)
T ss_dssp             --CCEEEEECEEEEEEEET-TCTTSC--CEEE--EEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE
T ss_pred             CCccEEEEEccCeEEEEEC-CCCceE--EEEE--ecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC
Confidence            3689999999999999999 554311  1111  134578899999999999999999999999999998753 3344 7


Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      ++..|.|||+||.+++|||+|...++|++++++|..  ++.++ ...+..|++||+||..|+||||||+.. ++|+|+.|
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~-~~~~~~P~giavdp~~g~ly~td~~~~-~~I~r~~~  152 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLF-WQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGM  152 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEE-CSSCSSEEEEEEEGGGTEEEEEECSSS-CEEEEEET
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEEE-eCCCCCccEEEEeCCCCEEEEEecCCC-CEEEEEEc
Confidence            888999999999999999999999999999998854  34433 467899999999999999999999853 59999999


Q ss_pred             cCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEE
Q psy5768         434 SGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVL  513 (652)
Q Consensus       434 dG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~  513 (652)
                      ||+.+++++...+.+|+||++|+.+++|||+|...++|++++++|++++++....+.+|+||+++++.|||+||.+++|.
T Consensus       153 dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~  232 (318)
T 3sov_A          153 DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSIL  232 (318)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEE
Confidence            99999999988899999999999999999999999999999999999999987678999999999999999999999999


Q ss_pred             EEEccCCceEEEEecccCCcceeEEEeccCCCCCCCCCCCCCCCCccccccCCCC-ceeeeccCceeeccC-CcccC
Q psy5768         514 RANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETG-QVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       514 ~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~lCl~~~~~-~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++++.+|+..+++...+..|++|+++|+..|+...|||..+||+|+|+|++.|.+ +++|+||+||.|.+| ++|..
T Consensus       233 ~~~~~~G~~~~~i~~~~~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~  309 (318)
T 3sov_A          233 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD  309 (318)
T ss_dssp             EEETTTCCSCEEEECCCSSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBCC
T ss_pred             EEECCCCCceEEEeCCCCCCcEEEEeccccccccccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCCC
Confidence            9999999988888888899999999999888877899999999999999999875 699999999999999 88876

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=2.4e-51  Score=428.51  Aligned_cols=300  Identities=26%  Similarity=0.545  Sum_probs=262.5

Q ss_pred             ceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccC----CcceEEe-
Q psy5768         278 DAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLL-  352 (652)
Q Consensus       278 ~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g----~~~~~i~-  352 (652)
                      ++||||++++.|+++++ +..++.   ..+   ..+.++.+++||+.+++|||+|...++|++++++|    +..+.++ 
T Consensus         1 ~~~ll~~~~~~I~~i~~-~~~~~~---~~~---~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            1 IAYLFFTNRHEVRKMTL-DRSEYT---SLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             CCEEEEECBSSEEEEET-TSCCCE---EEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             CCEEEEECCCeEEEEEC-CCcceE---ehh---cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            58999999999999999 554432   222   34678999999999999999999999999999987    5555666 


Q ss_pred             eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEe
Q psy5768         353 ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAF  432 (652)
Q Consensus       353 ~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~  432 (652)
                      .++..|.|||+||.+++|||+|...++|.++++++..  ++.++ ...+..|++||+||..|+|||+||+.. ++|+|+.
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~-~~I~~~~  149 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGG  149 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEE-ECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEE-ECCCCCcceEEeCCCCCEEEEEccCCC-CeEEEEc
Confidence            5778999999999999999999999999999998753  34444 356789999999999999999999852 5999999


Q ss_pred             ecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecC--CCCceeEEEEeCCEEEEEcCCCC
Q psy5768         433 FSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKI--SPLHPFDMAVYGEFIFWTDWVIH  510 (652)
Q Consensus       433 ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~--~~~~p~glav~~~~lYwtd~~~~  510 (652)
                      |||+.+++++...+.+|+||++|+.+++|||+|...++|++++++|..++++...  .+.+|+||++++++|||+||.++
T Consensus       150 ~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~  229 (316)
T 1ijq_A          150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE  229 (316)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred             CCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCC
Confidence            9999999888878999999999999999999999999999999999999988764  36899999999999999999999


Q ss_pred             eEEEEEccCCceEEEEecccCCcceeEEEeccCCCCCCCCCCCC---CCCCccccccCCC-----CceeeeccCceeecc
Q psy5768         511 AVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHL---NGNCDDICKLDET-----GQVVCSCFTGKVLME  582 (652)
Q Consensus       511 ~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~~~---ng~Cs~lCl~~~~-----~~~~C~Cp~g~~l~~  582 (652)
                      +|.++++.+|+..+++..++..|++|+++|...|+...|||..+   ||+|+|+|+++|.     ++++|+||+||+|.+
T Consensus       230 ~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~  309 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR  309 (316)
T ss_dssp             EEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             eEEEEeCCCCcceEEEecCCCCceEEEEeccccCCcccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECC
Confidence            99999999999888888888899999999988888788999988   9999999999873     479999999999999


Q ss_pred             C-CcccC
Q psy5768         583 D-NRSCT  588 (652)
Q Consensus       583 d-~~C~~  588 (652)
                      | ++|.+
T Consensus       310 d~~~C~~  316 (316)
T 1ijq_A          310 DMRSCLT  316 (316)
T ss_dssp             TSSCEEC
T ss_pred             CCCccCC
Confidence            9 88863

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=7.8e-52  Score=468.69  Aligned_cols=301  Identities=28%  Similarity=0.561  Sum_probs=268.8

Q ss_pred             ccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ec
Q psy5768         276 EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ER  354 (652)
Q Consensus       276 ~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~  354 (652)
                      .+++||+|+++..|++++| ++.+..   ..+ ...+++++.+|+||+.+++|||+|...++|++++++|+..+.++ .+
T Consensus         4 ~p~~~Ll~s~~~~I~~i~l-~~~~~~---~~~-~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g   78 (628)
T 4a0p_A            4 VPEAFLLFSRRADIRRISL-ETNNNN---VAI-PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG   78 (628)
T ss_dssp             -CCCEEEEEETTEEEEEES-SCTTCE---EEC-CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             CCCcEEEEEeCCcEEEEEC-CCCCcc---eEE-EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC
Confidence            4789999999999999999 543322   112 12456789999999999999999999999999999998888777 67


Q ss_pred             cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         355 QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       355 ~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      +..|.|||+||++++|||+|...++|++++++|..  +++++ ...+..|++|||||.+|+||||||+.. ++|+|+.||
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~-~~I~r~~~d  154 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLV-WKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMD  154 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEE-CSSCCCEEEEEEETTTTEEEEEECSSS-CEEEEEETT
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEE-eCCCCCcccEEEccCCCeEEEeCCCCC-CEEEEEeCC
Confidence            78999999999999999999999999999998864  34443 468899999999999999999999853 699999999


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEE
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLR  514 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~  514 (652)
                      |+.+++++. .+.+|+||++|+.+++|||+|.+.++|++++++|..++++.. .+.+|+||++++++||||||.+++|++
T Consensus       155 G~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~-~l~~P~glav~~~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          155 GSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD-DLPHPFGLTQYQDYIYWTDWSRRSIER  232 (628)
T ss_dssp             SCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CCSCEEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec-cCCCceEEEEECCEEEEecCCCCEEEE
Confidence            999999885 789999999999999999999999999999999999976654 579999999999999999999999999


Q ss_pred             EEccCCceEEEEecccCCcceeEEEeccCCCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         515 ANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       515 ~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|.+|+..+++..++..|++|+++|...|+ ..|||..+||+|+|+|++.|.++++|+||.||.|..| ++|.+
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~-~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~  306 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA  306 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSC-CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccc-cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence            9999999999999888899999999987776 5799999999999999999966899999999999999 89976

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=7.7e-53  Score=483.78  Aligned_cols=343  Identities=26%  Similarity=0.534  Sum_probs=295.9

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc--ccceEEEEeeecceeEEecCCCCCCCCCceeeeecc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS--EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST  311 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~--~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~  311 (652)
                      .++++|.. +++|+|+|+..+++|+|.|+.|| +..++++|.  ...++||+++...|+++++ +...+.    .+  ..
T Consensus       332 ~dideC~~-~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~-~~~~~~----~~--~~  403 (699)
T 1n7d_A          332 EDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL-DRSEYT----SL--IP  403 (699)
T ss_dssp             CCCCCCSS-SSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECT-TSCCEE----CC--SC
T ss_pred             cCccccCC-CCccccccccCCCCeeeeeecccccCCCCCcccccccceeEEecCccceEEEeC-CCCcce----ee--ec
Confidence            57899974 57899999988889999999998 556899998  5678999999999999998 443322    11  13


Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccC----CcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g----~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      .+.++.+|+||+.+++|||+|...++|++++++|    +..+.++ .++..|.||||||.+++|||+|...++|.+++++
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            3567889999999999999999999999999987    4444555 5677899999999999999999999999999988


Q ss_pred             CCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                      +..   ..++....+..|++|||||..|+||||||+.. ++|+|+.|+|+.+++++...+.+|+|||||+.+++|||+|.
T Consensus       484 g~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~~-~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          484 GVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             SCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSSS-CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             CCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCCC-CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence            753   33333346789999999999999999999853 59999999999999888878999999999999999999999


Q ss_pred             CCCeEEEEecCCCceEEEecC--CCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEEeccCC
Q psy5768         467 RLDKIERCDYDGTNRIVLSKI--SPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLD  544 (652)
Q Consensus       467 ~~~~I~~~~ldG~~~~~l~~~--~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~  544 (652)
                      ..++|++++++|.++++++..  .+.+|+||++++++|||+||.+++|.++++.+|+.+++|...+..|++|+++|...|
T Consensus       560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~q  639 (699)
T 1n7d_A          560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQ  639 (699)
T ss_dssp             TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSS
T ss_pred             CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccC
Confidence            999999999999999998763  368999999999999999999999999999999988888877889999999999888


Q ss_pred             CCCCCCCCCC---CCCCccccccCCC-----CceeeeccCceeeccC-CcccCc
Q psy5768         545 ACAKTPCRHL---NGNCDDICKLDET-----GQVVCSCFTGKVLMED-NRSCTI  589 (652)
Q Consensus       545 ~~~~~~C~~~---ng~Cs~lCl~~~~-----~~~~C~Cp~g~~l~~d-~~C~~~  589 (652)
                      +...|||..+   ||+|+||||++|.     ..|+|+||+||+|..| ++|.+.
T Consensus       640 p~~~n~C~~~~~~ng~Cs~lCl~~p~~~~~~~~~~C~Cp~g~~l~~d~~~C~~~  693 (699)
T 1n7d_A          640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE  693 (699)
T ss_dssp             CCSCCSSCSSSCSSCSCTTCCBCCCCCTTCSCSCBCCCCSSCEECSSTTCEECC
T ss_pred             CCCCCCccccCCCCCCCCcccCcCcccCCCCCCcEEECcCCCEECCCCCccCCC
Confidence            8888999987   9999999998763     2699999999999998 899874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1.3e-45  Score=417.42  Aligned_cols=466  Identities=18%  Similarity=0.305  Sum_probs=339.8

Q ss_pred             eEEEecCCCCeEEEEecCCCee-EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      .|+++|..+++|++++++|... .+++..      .+..|.|||+|+.+++|||+|  ...++|.+++++|+.+++++..
T Consensus        53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~------~~~~P~GlAvD~~~~~ly~~d--~~~~~I~v~~~dG~~~~~l~~~  124 (619)
T 3s94_A           53 LIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLDGSLRKVLFWQ  124 (619)
T ss_dssp             EEEEEETTTTEEEEEEC-----CEEEECS------SCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECS
T ss_pred             EEEEEECCCCeEEEEEccCCCceEEEEeC------CCCCcCeEEEEecCCEEEEEe--CCCCEEEEEECCCCCEEEEEeC
Confidence            5899999999999999998743 344432      567899999999999999999  8899999999999999999877


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCC-CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA  159 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~-~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~  159 (652)
                      . +..|.    +||||...+.|||+|.+ ..+|+++++||+.+++++...+..|.+|++|+.++.|||+|.+ ...|+++
T Consensus       125 ~-l~~P~----~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~-~~~I~~~  198 (619)
T 3s94_A          125 E-LDQPR----AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKS  198 (619)
T ss_dssp             S-CSCCC----CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETT-TCCEEEE
T ss_pred             C-CCCCc----eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCC-CCeEEEe
Confidence            7 88999    99999999999999965 5799999999999999998889999999999999999999986 5689999


Q ss_pred             eCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecC----------CCCceEEEeecCCCCCcceeeee
Q psy5768         160 GLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSN----------LSDVSTISMKPYGDSYLKDIKIY  229 (652)
Q Consensus       160 ~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~i~v~  229 (652)
                      +++|+.+..++...+..|.||+++.  ++|||+|...+.+..+-...          ...+..+.+.+... +|....--
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~-qp~~~n~C  275 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQR-QPNATNPC  275 (619)
T ss_dssp             SSSCCEEC---------CCCEEESS--SEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGG-SCCCCCTT
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEcccc-CCCccccc
Confidence            9999999988876788999999974  49999887654444433322          22333333432221 22110000


Q ss_pred             eeccCCCCCCCCCCCCCCcccce------ecCCCceEEEeCC-ccc-----------cCCC--c----------------
Q psy5768         230 SKDAQTGTNPCGVNNGGCAELCL------YNGVSAVCACAHG-VVA-----------QDGK--S----------------  273 (652)
Q Consensus       230 ~~~~q~~~n~C~~~ng~Cs~lC~------~~~~~~~C~C~~G-~l~-----------~dg~--~----------------  273 (652)
                      ....-...+-|......-+..|.      +.+.+.+|.-... +|.           .+..  +                
T Consensus       276 ~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld  355 (619)
T 3s94_A          276 GIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID  355 (619)
T ss_dssp             TTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred             cCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEE
Confidence            00000112223221110011121      1111223321000 110           0000  0                


Q ss_pred             ccccceEEEEee--ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE
Q psy5768         274 CSEYDAFIMYSR--VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL  351 (652)
Q Consensus       274 C~~~~~~Ll~s~--~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i  351 (652)
                      -...+..|++++  ...|+++.+ +++..    ..+. ...+..+.++++|+..+.|||+|...++|.+++++|+.++++
T Consensus       356 ~d~~~~~ly~sD~~~~~I~r~~~-~g~~~----~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l  429 (619)
T 3s94_A          356 YDPVEGYIYWTDDEVRAIRRSFI-DGSGS----QFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL  429 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEET-TSCSC----EEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             EEcCCCeEEEEeCCCCeEEEEEc-CCCcc----EEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence            001245677775  567899988 55432    1222 245677889999999999999999999999999999988888


Q ss_pred             e-eccCceeeeEEEccCCEEEEEeCCC-CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceE
Q psy5768         352 L-ERQGSVEGLAYEYVHNYLYWTCNND-ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ  429 (652)
Q Consensus       352 ~-~~~~~~~glAvDw~~~~LYwtd~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~  429 (652)
                      + +++..|.+||+|+..+.|||||.+. .+|+++.++|..  +..++ ...+..|.+||+|+..++|||+|.+..  +|+
T Consensus       430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~--~~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~--~I~  504 (619)
T 3s94_A          430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVLV-NTSLGWPNGLALDYDEGKIYWGDAKTD--KIE  504 (619)
T ss_dssp             ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTT--EEE
T ss_pred             EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc--cEEEE-eCCCCCCeeeEEcccCCEEEEEECCCC--EEE
Confidence            7 6889999999999999999999764 799999999875  44443 457899999999999999999998854  999


Q ss_pred             EEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEe
Q psy5768         430 RAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY  498 (652)
Q Consensus       430 r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~  498 (652)
                      ++.+||+.+++++...+..|.|||++  +++|||+|...++|++++....+++++.. .+..|++|.++
T Consensus       505 ~~~~dG~~~~~~~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g~~~~~~~-~~~~~~~i~~~  570 (619)
T 3s94_A          505 VMNTDGTGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVIID-QLPDLMGLKAT  570 (619)
T ss_dssp             EEESSSCCCEEEEECCCCSSCCEEEE--TTEEEEECTTSSCEEEEESSSCCEEEEEC-SCCCEEEEEEE
T ss_pred             EEecCCCceEEEeccCCCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCCceEEEec-CCCCCceeeec
Confidence            99999999999988889999999998  66999999999999999987667777665 45889999765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=4.8e-40  Score=347.68  Aligned_cols=259  Identities=27%  Similarity=0.490  Sum_probs=222.4

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      |++++.  ...|++++++|.....+..       .+..|.+|++|+.+++|||+|  ...++|+|++++|+..+.++..+
T Consensus        46 ~ll~~~--~~~I~~i~~~g~~~~~~~~-------~~~~~~~l~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~~  114 (349)
T 3v64_C           46 VLLFAN--RIDIRQVLPHRSEYTLLLN-------NLENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVSTG  114 (349)
T ss_dssp             EEEEEC--BSCEEEECTTSCCEEEEEC-------SCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSS
T ss_pred             eeEeec--ccceEEEeCCCCeeEEeec-------CCCceEEEEEeccccEEEEEe--ccCCceEEEecCCCCceEEEeCC
Confidence            677774  5679999999987777664       567899999999999999999  88899999999999988888888


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       +..|.    |||+||.+++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+|+++
T Consensus       115 -~~~p~----glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          115 -LESPG----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             -CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             -CCCcc----EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence             88899    9999999999999999999999999999999999988899999999999999999999986589999999


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEe----------CCCCcEEEEEecCCCCceEEE-----------------
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRN----------LSKGNIHIISLSNLSDVSTIS-----------------  214 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d----------~~g~~~~~i~~~~~~~~~~~~-----------------  214 (652)
                      ||+.++.++...+.+|+||++|+.+++|||+|          ++|++++.++......|..++                 
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred             CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEE
Confidence            99999998888899999999999999999954          566655555432222222211                 


Q ss_pred             -e-----------ecCCCCCcceeeeeeeccC-CCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccccc
Q psy5768         215 -M-----------KPYGDSYLKDIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEY  277 (652)
Q Consensus       215 -~-----------~~~~~~~~~~i~v~~~~~q-~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~  277 (652)
                       +           ...+ ..|++|++||+.+| ...|||..+||+|+|||++.+.+|+|+||.||...|+++|..+
T Consensus       270 ~~~~~~G~~~~~i~~~~-~~p~gi~v~~~~~qp~~~n~C~~~~g~C~~lCl~~~~~~~C~C~~g~~~~d~~~C~~~  344 (349)
T 3v64_C          270 SANKFTGKNQEIIRNKL-HFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALE  344 (349)
T ss_dssp             EEETTTCCSCEEEECSC-SCCCCEEEECGGGSCCCCCTTTTGGGGCSSEEECCTTSCEEECCTTEEEETTTEEEEG
T ss_pred             EEEccCCCccEEeccCC-CCCceEEEEccccCccccCcccCCCCCcccEeecCCCCCeeECCCCCcCCCCCcccch
Confidence             1           1112 36889999999999 6899999999999999999888999999999876699999743

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=3.6e-40  Score=343.59  Aligned_cols=260  Identities=29%  Similarity=0.574  Sum_probs=218.2

Q ss_pred             CeEEEecCCCCeEEEEecCCCe--eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEE
Q psy5768           1 MFIAVSSPTQSKIVVCNLEGEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETV   77 (652)
Q Consensus         1 ~~i~v~~~~~~~I~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v   77 (652)
                      .|++++.  ...|+++++++..  ...+++       .++.+.+|++|+.+++|||+|  ...++|+|+.++|+. .+.+
T Consensus         5 p~ll~~~--~~~I~~i~l~~~~~~~~~~~~-------~~~~~~~ld~d~~~~~lyw~D--~~~~~I~r~~~~g~~~~~~~   73 (318)
T 3sov_A            5 PLLLYAN--RRDLRLVDATNGKENATIVVG-------GLEDAAAVDFVFSHGLIYWSD--VSEEAIKRTEFNKTESVQNV   73 (318)
T ss_dssp             CEEEEEC--EEEEEEEETTCTTSCCEEEEE-------EEEEEEEEEEEGGGTEEEEEE--TTTTEEEEEETTSSSCCCEE
T ss_pred             cEEEEEc--cCeEEEEECCCCceEEEEEec-------CCCccEEEEEEeCCCEEEEEE--CCCCcEEEEEccCCCceEEE
Confidence            3678885  6889999999874  333443       467899999999999999999  888999999999985 3566


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      +..+ +..|+    |||+||.+++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+
T Consensus        74 ~~~~-l~~p~----glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~  148 (318)
T 3sov_A           74 VVSG-LLSPD----GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE  148 (318)
T ss_dssp             EEEC-CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred             EcCC-CCCcc----EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEE
Confidence            6777 88899    999999999999999999999999999999999988889999999999999999999998778999


Q ss_pred             EEeCCCCCcEEEEeecccCceeEEEeccCCEEEEE----------eCCCCcEEEEEecCCCCceEEE-------------
Q psy5768         158 RAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR----------NLSKGNIHIISLSNLSDVSTIS-------------  214 (652)
Q Consensus       158 ~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~----------d~~g~~~~~i~~~~~~~~~~~~-------------  214 (652)
                      |+++||+.++.++...+.+|+||++|+.+++|||+          +++|++++.+.......|..++             
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~  228 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWST  228 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTT
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCC
Confidence            99999999999988889999999999999999995          4666666665532222222211             


Q ss_pred             ----------------eecCCCCCcceeeeeeeccCC-CCCCCCCCCCCCcccceecCC--CceEEEeCCc-cccCCCcc
Q psy5768         215 ----------------MKPYGDSYLKDIKIYSKDAQT-GTNPCGVNNGGCAELCLYNGV--SAVCACAHGV-VAQDGKSC  274 (652)
Q Consensus       215 ----------------~~~~~~~~~~~i~v~~~~~q~-~~n~C~~~ng~Cs~lC~~~~~--~~~C~C~~G~-l~~dg~~C  274 (652)
                                      +.... ..|++|+|||+.+|. ..|||..+||+|+|+|++.|.  +|+|+||.|| |.+|+++|
T Consensus       229 ~~V~~~~~~~G~~~~~i~~~~-~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c  307 (318)
T 3sov_A          229 HSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC  307 (318)
T ss_dssp             TEEEEEETTTCCSCEEEECCC-SSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCB
T ss_pred             CeEEEEECCCCCceEEEeCCC-CCCcEEEEeccccccccccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCC
Confidence                            11111 368999999999994 689999999999999998775  6999999998 77899999


Q ss_pred             ccc
Q psy5768         275 SEY  277 (652)
Q Consensus       275 ~~~  277 (652)
                      .+.
T Consensus       308 ~~~  310 (318)
T 3sov_A          308 KDG  310 (318)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            853

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=1.8e-39  Score=349.54  Aligned_cols=258  Identities=27%  Similarity=0.486  Sum_probs=218.6

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC----CccEEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG----TKRETV   77 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg----s~~~~v   77 (652)
                      |++++.  ...|+++++++.....+++       .++.|.+||||+.+++|||+|  ...++|+|+.++|    +..+.+
T Consensus        85 ~ll~~~--~~~I~~i~l~~~~~~~~~~-------~~~~~~~l~~d~~~~~lywsD--~~~~~I~~~~~~g~~~~~~~~~~  153 (400)
T 3p5b_L           85 YLFFTN--RHEVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTV  153 (400)
T ss_dssp             EEEEEE--TTEEEEECTTSCSCEEEEC-------SCSCEEEEEEETTTTEEEEEE--TTTTEEEEEEC------CCCEEE
T ss_pred             eeEEec--cceeEEEccCCcceeEecc-------ccCcceEEeeeeccCceEEEe--cCCCeEEEEEcccCCCCCcceEE
Confidence            677774  6899999999988877765       578999999999999999999  8889999999998    557888


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      +..+ +..|.    ||||||++++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+
T Consensus       154 ~~~~-~~~p~----glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~  228 (400)
T 3p5b_L          154 ISRD-IQAPD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  228 (400)
T ss_dssp             ECSS-CSCEE----EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred             EeCC-CCCcc----cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence            8877 88999    999999999999999999999999999999999999889999999999999999999998778999


Q ss_pred             EEeCCCCCcEEEEeecccCceeEEEeccCCEEEEE----------eCCCCcEEEEEecC--CCCceEEE-----------
Q psy5768         158 RAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR----------NLSKGNIHIISLSN--LSDVSTIS-----------  214 (652)
Q Consensus       158 ~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~----------d~~g~~~~~i~~~~--~~~~~~~~-----------  214 (652)
                      +++|||+.++.++...+.+|+|||+|+.+++|||+          +++|+++++++...  ..++..++           
T Consensus       229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~  308 (400)
T 3p5b_L          229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  308 (400)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEES
T ss_pred             EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecC
Confidence            99999999999998889999999999999999995          46776666665421  12222211           


Q ss_pred             -------e-----------ecCCCCCcceeeeeeeccC-CCCCCCC---CCCCCCcccceecCC------CceEEEeCCc
Q psy5768         215 -------M-----------KPYGDSYLKDIKIYSKDAQ-TGTNPCG---VNNGGCAELCLYNGV------SAVCACAHGV  266 (652)
Q Consensus       215 -------~-----------~~~~~~~~~~i~v~~~~~q-~~~n~C~---~~ng~Cs~lC~~~~~------~~~C~C~~G~  266 (652)
                             +           .... ..|++|+|||+.+| ...|||.   .+||+|+|+|++.+.      +|+|+||.||
T Consensus       309 ~~~~V~~~~~~~G~~~~~i~~~~-~~p~~i~v~~~~~qp~~~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~C~~g~  387 (400)
T 3p5b_L          309 INEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM  387 (400)
T ss_dssp             SSCSEEEEESSSCCCCEEEECSC-SCEEEEEEESGGGSCCCCCSSSSSSSGGGGCSSEEEECCCSSTTCCSEEEECCTTC
T ss_pred             CCCeEEEEEcCCCCceEEEecCC-CCCceEEEEeeccCCCCCCccccccCCCcCcCCeecCCCcccCCCCCeeEECCCCC
Confidence                   1           1111 35899999999999 4899996   468999999998654      6999999998


Q ss_pred             -cccCCCcccc
Q psy5768         267 -VAQDGKSCSE  276 (652)
Q Consensus       267 -l~~dg~~C~~  276 (652)
                       |.+|+++|.+
T Consensus       388 ~l~~d~~~C~~  398 (400)
T 3p5b_L          388 LLARDMRSCLT  398 (400)
T ss_dssp             EECTTSSSEES
T ss_pred             EECCCCCccCC
Confidence             7789999974

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=6.8e-39  Score=334.29  Aligned_cols=258  Identities=27%  Similarity=0.480  Sum_probs=214.8

Q ss_pred             CeEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC----CccEE
Q psy5768           1 MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG----TKRET   76 (652)
Q Consensus         1 ~~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg----s~~~~   76 (652)
                      .|++++.  ...|+++++++.....+++       .++.|.++++|+.+++|||+|  ...++|++++++|    +..+.
T Consensus         2 ~~ll~~~--~~~I~~i~~~~~~~~~~~~-------~~~~p~g~~~d~~~~~ly~~D--~~~~~I~~~~~~g~~~~~~~~~   70 (316)
T 1ijq_A            2 AYLFFTN--RHEVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDT   70 (316)
T ss_dssp             CEEEEEC--BSSEEEEETTSCCCEEEEC-------SCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEE
T ss_pred             CEEEEEC--CCeEEEEECCCcceEehhc-------CCCceEEEEEEeCCCEEEEEE--CCCCcEEEEECCCCCCCcccEE
Confidence            4788885  5789999999987767664       568999999999999999999  8889999999998    66677


Q ss_pred             EEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5768          77 VVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        77 v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I  156 (652)
                      ++..+ +..|.    |||+||.+++|||+|...++|++++++|+.+++++...+..|++|||||.+|+|||+||+..++|
T Consensus        71 ~~~~~-~~~p~----glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           71 VISRD-IQAPD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             EECSS-CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEeCC-CCCcC----EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence            77767 78899    99999999999999999999999999999999998878899999999999999999999866899


Q ss_pred             EEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEE----------eCCCCcEEEEEec--CCCCceEEE----------
Q psy5768         157 ARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR----------NLSKGNIHIISLS--NLSDVSTIS----------  214 (652)
Q Consensus       157 ~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~----------d~~g~~~~~i~~~--~~~~~~~~~----------  214 (652)
                      +++++||+.+++++...+.+|+||++|+.+++|||+          +++|++++.+...  ....|..++          
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d  225 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD  225 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEE
Confidence            999999999998887789999999999999999995          4666666655432  112222111          


Q ss_pred             --------ee-----------cCCCCCcceeeeeeeccC-CCCCCCCCC---CCCCcccceecC------CCceEEEeCC
Q psy5768         215 --------MK-----------PYGDSYLKDIKIYSKDAQ-TGTNPCGVN---NGGCAELCLYNG------VSAVCACAHG  265 (652)
Q Consensus       215 --------~~-----------~~~~~~~~~i~v~~~~~q-~~~n~C~~~---ng~Cs~lC~~~~------~~~~C~C~~G  265 (652)
                              +.           .++ ..|++|+++|+.+| .+.|||..+   ||+|+|+|++.|      .+|+|+||.|
T Consensus       226 ~~~~~V~~~~~~~g~~~~~i~~~~-~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g  304 (316)
T 1ijq_A          226 IINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG  304 (316)
T ss_dssp             TTTTEEEEEETTTCCCCEEEECSC-SCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTT
T ss_pred             CCCCeEEEEeCCCCcceEEEecCC-CCceEEEEeccccCCcccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCC
Confidence                    11           111 36889999999998 489999998   999999999775      3799999999


Q ss_pred             c-cccCCCccc
Q psy5768         266 V-VAQDGKSCS  275 (652)
Q Consensus       266 ~-l~~dg~~C~  275 (652)
                      | |.+|+++|.
T Consensus       305 ~~l~~d~~~C~  315 (316)
T 1ijq_A          305 MLLARDMRSCL  315 (316)
T ss_dssp             CEECTTSSCEE
T ss_pred             CEECCCCCccC
Confidence            8 778999995

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=6.3e-39  Score=343.81  Aligned_cols=257  Identities=27%  Similarity=0.501  Sum_probs=221.5

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      +++++.  ...|+++++++.....+..       .++.|.+|++|+.+++|||+|  ...++|+|++++|+..++++..+
T Consensus        89 ~l~~~~--~~~I~~i~~~~~~~~~~~~-------~~~~~~gl~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           89 VLLFAN--RIDIRQVLPHRSEYTLLLN-------NLENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEEEEC--BSCEEEECTTSCCCEEEEC-------SCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCEEEEECSS
T ss_pred             eeEeec--CccceeeccCCCcEEEEec-------CCCccEEEEEecCCCeEEEEe--CCCCcEEEEecCCCCcEEEEeCC
Confidence            566664  5789999999987777764       567899999999999999999  88899999999999888888888


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       +..|.    |||+||.+++|||+|...++|++++++|+.+++++..++..|++|||||.+|+||||||+..++|+|+++
T Consensus       158 -~~~p~----glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          158 -LESPG----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             -CSCCC----CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             -CCCcc----EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence             88899    9999999999999999999999999999999999988899999999999999999999986689999999


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEe----------CCCCcEEEEEecCCCCceEEE-----------------
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRN----------LSKGNIHIISLSNLSDVSTIS-----------------  214 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d----------~~g~~~~~i~~~~~~~~~~~~-----------------  214 (652)
                      ||+.++.++...+.+|+||++|+.+++|||+|          ++|+.++.++......|..++                 
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~  312 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN  312 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEE
Confidence            99999999988899999999999999999955          556555555432222222211                 


Q ss_pred             -e-----------ecCCCCCcceeeeeeeccC-CCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         215 -M-----------KPYGDSYLKDIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       215 -~-----------~~~~~~~~~~i~v~~~~~q-~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                       +           ...+ ..|++|++||+.+| ...|||..+||+|+|||++.|.+|+|+||.||...|+++|.
T Consensus       313 ~~~~~~G~~~~~i~~~~-~~p~gi~v~~~~~q~~~~n~C~~~ng~C~~lCl~~~~~~~C~C~~g~~~~d~~~C~  385 (386)
T 3v65_B          313 SANKFTGKNQEIIRNKL-HFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA  385 (386)
T ss_dssp             EEETTTCCSCEEEECSC-SCCCCEEEESGGGSCCCCCTTTTSCTTSSSEEECCSSSCEEECCTTCBCSSSSCCB
T ss_pred             EEECCCCcceEEEccCC-CCCceEEEEchhcCcCCcCccccCCCCCCceeeeCCCCCeeECCCCCcCCCCCccC
Confidence             1           1112 36889999999999 68999999999999999998889999999998777999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=364.85  Aligned_cols=257  Identities=27%  Similarity=0.486  Sum_probs=216.4

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCC----ccEEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT----KRETV   77 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs----~~~~v   77 (652)
                      +++++.  ...|+++++++.....++.       .++.+.+|+||+.+++|||+|  ...++|+++.++|.    ..+++
T Consensus       397 ~Ll~an--~~~Ir~i~l~~~~~~~l~~-------~~~~~~gl~~d~~~~~lY~sD--~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          397 YLFFTN--RHEVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             EEEEEC--BSSEEEECTTSCCCEEEEC-------SCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEEE
T ss_pred             cccccc--ccceeEeeccCCcceeeec-------CCCceEEEeecccCCeeEEee--ccceeEEEEeccCCCCCcceeEE
Confidence            456663  5789999999887777775       578999999999999999999  88899999999984    56777


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      +..+ +..|.    ||||||++++|||+|...++|++++++|+.+++++...+..|++|||||.+|+||||||+..++|+
T Consensus       466 i~~~-l~~P~----GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~  540 (791)
T 3m0c_C          466 ISRD-IQAPD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  540 (791)
T ss_dssp             ECSS-CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EecC-CCCcc----eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEE
Confidence            8777 88999    999999999999999999999999999999999999889999999999999999999999778999


Q ss_pred             EEeCCCCCcEEEEeecccCceeEEEeccCCEEEEE----------eCCCCcEEEEEecC--CCCceEEE-----------
Q psy5768         158 RAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR----------NLSKGNIHIISLSN--LSDVSTIS-----------  214 (652)
Q Consensus       158 ~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~----------d~~g~~~~~i~~~~--~~~~~~~~-----------  214 (652)
                      +++|+|+.+++++...+.+|+|||||+.+++|||+          +++|..+++++...  ..++..++           
T Consensus       541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~  620 (791)
T 3m0c_C          541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  620 (791)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred             EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEEC
Confidence            99999999999999889999999999999999995          45666666665421  12222211           


Q ss_pred             ------------------eecCCCCCcceeeeeeeccC-CCCCCCCC---CCCCCcccceecCC------CceEEEeCCc
Q psy5768         215 ------------------MKPYGDSYLKDIKIYSKDAQ-TGTNPCGV---NNGGCAELCLYNGV------SAVCACAHGV  266 (652)
Q Consensus       215 ------------------~~~~~~~~~~~i~v~~~~~q-~~~n~C~~---~ng~Cs~lC~~~~~------~~~C~C~~G~  266 (652)
                                        +...+ ..|++|+|||+.+| ...|||..   +||+|+|||++.|.      +|+|+||.||
T Consensus       621 ~~~~I~~~dk~tG~~~~~l~~~l-~~P~~i~v~h~~~Qp~~~N~C~~~~~~ng~CshlCl~~p~~~~~~~~~~C~Cp~g~  699 (791)
T 3m0c_C          621 INEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM  699 (791)
T ss_dssp             TTTEEEEEETTTCCCCEEEECSC-SCCCCEEEESGGGSCCCCCTTTSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTC
T ss_pred             CCCEEEEEeCCCCcceEEeecCC-CCceeEeeeccccCCCCCCcccccCCCCcCcCeeecCCCCcCCCCCCceeECCCCC
Confidence                              11122 36899999999999 58999987   89999999998663      6999999998


Q ss_pred             -cccCCCccc
Q psy5768         267 -VAQDGKSCS  275 (652)
Q Consensus       267 -l~~dg~~C~  275 (652)
                       |.+|+++|.
T Consensus       700 ~L~~d~~tC~  709 (791)
T 3m0c_C          700 LLARDMRSCL  709 (791)
T ss_dssp             EECTTSSCEE
T ss_pred             EECCCCCcCC
Confidence             778999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=5.1e-35  Score=335.78  Aligned_cols=259  Identities=27%  Similarity=0.479  Sum_probs=208.8

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC----CccEEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG----TKRETV   77 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg----s~~~~v   77 (652)
                      +++++.  ...|+++++++.....++.       .++.|.+|+||+.+++|||+|  ...++|++++++|    +..+.+
T Consensus       379 ~ll~~~--~~~I~~id~~~~~~~~~~~-------~~~~p~gla~d~~~~~Ly~sD--~~~~~I~~~~~~g~~~~~~~~~~  447 (699)
T 1n7d_A          379 YLFFTN--RHEVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTV  447 (699)
T ss_dssp             CBCCCC--TTC-CEECTTSCCEECCSC-------CCTTCCCCEEETTTTEEEECC--TTTTSBEEEESCCCCC-CCCCCB
T ss_pred             eEEecC--ccceEEEeCCCCcceeeec-------cCcceEEEccccccCeEEEEe--cCCCeEEEEecCCCCCCcceEEE
Confidence            345553  4689999999876655553       567899999999999999999  8889999999998    555666


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      +..+ +..|.    ||||||.+++|||+|...++|.+++++|+.+++++...+..|++|||||..|+||||||+..++|+
T Consensus       448 i~~~-~~~P~----glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          448 ISRD-IQAPD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             CCSC-C--CC----CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             EeCC-CCCcc----eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence            6666 77888    999999999999999999999999999999999988888999999999999999999998668999


Q ss_pred             EEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEe----------CCCCcEEEEEecC--CCCc---------------
Q psy5768         158 RAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRN----------LSKGNIHIISLSN--LSDV---------------  210 (652)
Q Consensus       158 ~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d----------~~g~~~~~i~~~~--~~~~---------------  210 (652)
                      +++|+|+.+++++...+.+|+|||+|+.+++|||+|          ++|.++++++...  ...+               
T Consensus       523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~  602 (699)
T 1n7d_A          523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  602 (699)
T ss_dssp             BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECS
T ss_pred             EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeC
Confidence            999999999988887899999999999999999955          4555555444210  1111               


Q ss_pred             ---eEEEeec----------CCCCCcceeeeeeeccC-CCCCCCCCC---CCCCcccceecC------CCceEEEeCCc-
Q psy5768         211 ---STISMKP----------YGDSYLKDIKIYSKDAQ-TGTNPCGVN---NGGCAELCLYNG------VSAVCACAHGV-  266 (652)
Q Consensus       211 ---~~~~~~~----------~~~~~~~~i~v~~~~~q-~~~n~C~~~---ng~Cs~lC~~~~------~~~~C~C~~G~-  266 (652)
                         .+..+.+          .....|++|+|||+.+| ...|||..+   ||+|+|||++.|      .+|+|+||.|| 
T Consensus       603 ~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~lCl~~p~~~~~~~~~~C~Cp~g~~  682 (699)
T 1n7d_A          603 INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML  682 (699)
T ss_dssp             TTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCCSCCSSCSSSCSSCSCTTCCBCCCCCTTCSCSCBCCCCSSCE
T ss_pred             CCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCCCCCCccccCCCCCCCCcccCcCcccCCCCCCcEEECcCCCE
Confidence               1111111          01136889999999999 578999987   999999999754      26999999998 


Q ss_pred             cccCCCcccc
Q psy5768         267 VAQDGKSCSE  276 (652)
Q Consensus       267 l~~dg~~C~~  276 (652)
                      |.+|+++|..
T Consensus       683 l~~d~~~C~~  692 (699)
T 1n7d_A          683 LARDMRSCLT  692 (699)
T ss_dssp             ECSSTTCEEC
T ss_pred             ECCCCCccCC
Confidence            7789999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=100.00  E-value=2.1e-30  Score=262.98  Aligned_cols=256  Identities=23%  Similarity=0.471  Sum_probs=215.1

Q ss_pred             ceEEEEeeecceeEEecCCCCCCCC--CceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ec
Q psy5768         278 DAFIMYSRVNRIDSIHMTDKSDLNS--PFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ER  354 (652)
Q Consensus       278 ~~~Ll~s~~~~i~~i~l~~~~~~~~--p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~  354 (652)
                      .+||+|++...|+++++ ++.....  ....+.  .....+.++++|+.+++|||+|...++|++++++|...+.++ .+
T Consensus         1 ~~~l~~~~~~~I~~~~~-~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~   77 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPL-ERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD   77 (267)
T ss_dssp             CEEEEEEEEEEEEEEEE-SSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred             CcEEEEEcCCeEEEEEe-cCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence            37899999999999999 5543221  011222  123678999999999999999999999999999987766666 56


Q ss_pred             cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         355 QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       355 ~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      +..|.+||+||.+++|||+|...++|.++++++..  .+.++ ...+..|++|++||..|+|||++++....+|++..+|
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~-~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEE-ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            67999999999999999999999999999998753  33333 3456899999999999999999987534599999999


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEE
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLR  514 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~  514 (652)
                      |..++++....+.+|+||++|+.+++|||+|...++|.+++++|..++.+.. ...+|++|++++++|||+|+.+++|.+
T Consensus       155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEEEEETTTTEEEE
T ss_pred             CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEeCCEEEEEECCCCeEEE
Confidence            9998888767788999999999999999999999999999999988877766 458999999999999999999999999


Q ss_pred             EEccCCceEEEEeccc-CCcceeEEEe
Q psy5768         515 ANKYTGEEVYTLRKNI-RRPMGIVAIS  540 (652)
Q Consensus       515 ~~k~~g~~~~~~~~~~-~~p~~i~~~~  540 (652)
                      +++.+|+....+..+. ..|++|++..
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EeCCCCCceEEEccccccccceeeecC
Confidence            9999998888876553 5799998764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.94  E-value=1.5e-24  Score=219.74  Aligned_cols=179  Identities=25%  Similarity=0.416  Sum_probs=143.0

Q ss_pred             eEEEecCCCCeEEEEecCCCeeE-----EEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQT-----TILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET   76 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~   76 (652)
                      +|++++  .+.|++++++|+...     .+...      ..+.|.++++|+.+++|||+|  ...++|++++++|...+.
T Consensus         3 ~l~~~~--~~~I~~~~~~g~~~~~~~~~~~~~~------~~~~~~gi~~d~~~~~ly~~d--~~~~~I~~~~~~g~~~~~   72 (267)
T 1npe_A            3 HLLFAQ--TGKIERLPLERNTMKKTEAKAFLHI------PAKVIIGLAFDCVDKVVYWTD--ISEPSIGRASLHGGEPTT   72 (267)
T ss_dssp             EEEEEE--EEEEEEEEESSSCBCGGGCEEEEEE------EEEEEEEEEEETTTTEEEEEE--TTTTEEEEEESSSCCCEE
T ss_pred             EEEEEc--CCeEEEEEecCcccccccceeeecC------CCCcEEEEEEecCCCEEEEEE--CCCCEEEEEecCCCCcEE
Confidence            678886  468999999997643     22221      235889999999999999999  888999999999988777


Q ss_pred             EEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC-CCe
Q psy5768          77 VVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPL  155 (652)
Q Consensus        77 v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~-~~~  155 (652)
                      ++..+ +..|.    +||+||.+++|||+|...++|.+++++|+..++++..++..|++|++||.+|+|||+|++. .++
T Consensus        73 ~~~~~-~~~p~----~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~  147 (267)
T 1npe_A           73 IIRQD-LGSPE----GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK  147 (267)
T ss_dssp             EECTT-CCCEE----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred             EEECC-CCCcc----EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence            77776 78899    9999999999999999999999999999988888777778999999999999999999863 457


Q ss_pred             EEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         156 IARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       156 I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      |.++.+||+....+....+..|+||++|+.+++|||++..
T Consensus       148 I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          148 IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             EEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence            7777777766555544445556666666555566665543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.94  E-value=1.1e-24  Score=224.19  Aligned_cols=272  Identities=12%  Similarity=0.160  Sum_probs=202.3

Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCC
Q psy5768         141 ESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGD  220 (652)
Q Consensus       141 ~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~  220 (652)
                      .+++||+++......|.+.+.||+..+.+....   +.-|.+  .++.||+++...+..+..                  
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~---~~~i~~--~g~~Iyy~~~~~~~~~~~------------------   80 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT---AMYINA--DKNYVYYVRNNNQKITSQ------------------   80 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE---EEEEEE--CSSEEEEEEECC------------------------
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc---eeeEEE--cCCEEEEEECCCCccccc------------------
Confidence            488999997644578999999999988766543   455544  467888876542210000                  


Q ss_pred             CCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCC
Q psy5768         221 SYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDL  300 (652)
Q Consensus       221 ~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~  300 (652)
                                                                  ++              + .+.+..|+++++ ++.+.
T Consensus        81 --------------------------------------------~~--------------~-~~n~~~Iy~i~~-dg~~~  100 (302)
T 3s25_A           81 --------------------------------------------TF--------------F-SYDRNSLCRIKR-NGHGS  100 (302)
T ss_dssp             --------------------------------------------CC--------------S-SCCSEEEEEEET-TSCCC
T ss_pred             --------------------------------------------ce--------------e-ccCCCeEEEEeC-CCCcc
Confidence                                                        00              0 023456888888 66543


Q ss_pred             CCCceeeeeccccceEEEEEEEcCCCeEEEee---cccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC
Q psy5768         301 NSPFESIRNSTMMKNIIELSYDYKRKTLFYSD---IQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND  377 (652)
Q Consensus       301 ~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd---~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~  377 (652)
                          ..+..  .    .+.++.+..++|||++   .....|++++++|+..+.|.....    +++||.+++|||++.+.
T Consensus       101 ----~~l~~--~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A          101 ----TVLDP--D----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             ----EEEEC--S----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred             ----eEeec--C----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence                23332  1    1234555789999999   567889999999999888874321    67899999999999988


Q ss_pred             CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecC
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQ  457 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~  457 (652)
                      .+|.+++++|..  ++ .+. .   .+..++++|..++|||++|+.. ++|+|+.|||+++++|.++.+  |   .+|+.
T Consensus       167 ~~Iy~~~l~g~~--~~-~l~-~---~~~~~~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~  233 (302)
T 3s25_A          167 GQLYRYDTASQS--EA-LFY-D---CNCYKPVVLDDTNVYYMDVNRD-NAIVHVNINNPNPVVLTEANI--E---HYNVY  233 (302)
T ss_dssp             CCEEEEETTTTE--EE-EEE-C---SCEEEEEEEETTEEEEEEGGGT-TEEEEECSSSCCCEECSCSCE--E---EEEEE
T ss_pred             ceEEEEECCCCC--EE-EEe-C---CCccceeeecCCEEEEEEcCCC-cEEEEEECCCCCeEEEeCCCc--c---eEEEC
Confidence            999999998753  33 332 2   3556778899999999999865 699999999999988876554  2   37778


Q ss_pred             CCEEEEE-eCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEE
Q psy5768         458 AEKLFWG-DARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTL  526 (652)
Q Consensus       458 ~~~LYw~-D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~  526 (652)
                      +++|||+ +...+.|+++++||++++.|...   ...+|++++++|||+||.+++|+++. .+|+...++
T Consensus       234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~~~l  299 (302)
T 3s25_A          234 GSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTS-TQNPDTIKA  299 (302)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEEEEEECSSEEEEEETTTCCEEEEE-SSSCCSCEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccceEEEeCCEEEEEECCCCeEEEEE-CCCCCceEe
Confidence            9999997 66778999999999999999874   35689999999999999999999986 567654443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.82  E-value=6.9e-18  Score=173.49  Aligned_cols=264  Identities=12%  Similarity=0.209  Sum_probs=185.6

Q ss_pred             cCCcEEEEeC-CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC------------CCeEEEEeCCCC
Q psy5768          98 IAQNIYWSDP-KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK------------IPLIARAGLDGK  164 (652)
Q Consensus        98 ~~~~lY~~d~-~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~------------~~~I~~~~ldg~  164 (652)
                      ..+.||++.. ..+.|.+++.||+..+.|-..   .+..|.++  .++||+++...            ...|.+.++||+
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---TAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---EEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---ceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            4889999974 367999999999887666543   46777665  88999997542            246777777777


Q ss_pred             CcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCC
Q psy5768         165 KQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNN  244 (652)
Q Consensus       165 ~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~n  244 (652)
                      .+..+....     +.++.+.+++|||++.+..                                               
T Consensus        99 ~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~-----------------------------------------------  126 (302)
T 3s25_A           99 GSTVLDPDP-----CIYASLIGNYIYYLHYDTQ-----------------------------------------------  126 (302)
T ss_dssp             CCEEEECSC-----EEEEEEETTEEEEEEESSS-----------------------------------------------
T ss_pred             cceEeecCC-----ccEEEEeCCEEEEEeecCC-----------------------------------------------
Confidence            766654322     3344456677777662100                                               


Q ss_pred             CCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcC
Q psy5768         245 GGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYK  324 (652)
Q Consensus       245 g~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~  324 (652)
                                                              ....|.++.+ ++++.    +.|... .   +  .++++.
T Consensus       127 ----------------------------------------~~~~Iy~~~~-dGs~~----~~lt~~-~---~--~~~~~~  155 (302)
T 3s25_A          127 ----------------------------------------TATSLYRIRI-DGEEK----KKIKNH-Y---L--FTCNTS  155 (302)
T ss_dssp             ----------------------------------------SCEEEEEEET-TSCCC----EEEESS-C---C--CCSEEE
T ss_pred             ----------------------------------------CCceEEEEEC-CCCCe----EEEeCC-C---c--eEeeEE
Confidence                                                    0123444554 33332    122221 0   1  345777


Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC-CeEEEEEcCCCCCccEEEEEeCCCCC
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND-ATINKIDLDSPKAQRIVVVRLGQHDK  403 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~  403 (652)
                      .+.|||++.....|++++++|+.++.+..+   +..+++++.++.|||++... ..|.+++++|..   +.++...  ..
T Consensus       156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~--~~  227 (302)
T 3s25_A          156 DRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEA--NI  227 (302)
T ss_dssp             TTEEEEECTTTCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCS--CE
T ss_pred             CCEEEEEeCCCceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCC--Cc
Confidence            899999998788999999999888777642   33456777999999999754 589999999865   3333211  12


Q ss_pred             ceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEE
Q psy5768         404 PRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV  483 (652)
Q Consensus       404 P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~  483 (652)
                         ..++|..++|||++.... ..|+++++||++++.|....     ..+|...+++|||+|...+.|+++.+||+++.+
T Consensus       228 ---~~~~~~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~-----~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~~~  298 (302)
T 3s25_A          228 ---EHYNVYGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK  298 (302)
T ss_dssp             ---EEEEEETTEEEEEECSSS-CEEEEEETTSCCCEEEEESC-----EEEEEECSSEEEEEETTTCCEEEEESSSCCSCE
T ss_pred             ---ceEEECCCEEEEEECCCC-cEEEEEECCCCccEEeeCCc-----cceEEEeCCEEEEEECCCCeEEEEECCCCCceE
Confidence               347888999999865433 59999999999999887642     335666799999999999999999999999887


Q ss_pred             Eec
Q psy5768         484 LSK  486 (652)
Q Consensus       484 l~~  486 (652)
                      ++.
T Consensus       299 l~~  301 (302)
T 3s25_A          299 ALQ  301 (302)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.5e-17  Score=180.17  Aligned_cols=261  Identities=13%  Similarity=0.081  Sum_probs=182.8

Q ss_pred             CCCCeeEEEEEC-CCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCC----
Q psy5768          36 TLSKISSIAVWP-VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKEN----  110 (652)
Q Consensus        36 ~~~~~~~v~~d~-~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~----  110 (652)
                      .+..|.+|++|| .++.||++|  .. .+|+++++++.....+.. . ...|.    +||+|+..+.||++|...+    
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d--~~-~~I~~id~~~~~v~~~~~-~-~~~P~----~ia~d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVG--EQ-HPTRLIDFEKEYVSTVYS-G-LSKVR----TICWTHEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEE--BT-EEEEEEETTTTEEEEEEC-C-CSCEE----EEEECTTSSEEEEEECCSCTTSE
T ss_pred             CCCCCCEEEECCCCCCeEEEEe--CC-CcEEEEECCCCEEEEEec-C-CCCcc----eEEEeCCCCEEEEEeCCCCcccc
Confidence            578999999999 689999999  55 899999999877666655 4 67788    9999997777999997432    


Q ss_pred             EEEEEEcCCCcE--EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEee-cccCceeEEEeccCC
Q psy5768         111 VIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-IIMPIKDITLDLKFF  187 (652)
Q Consensus       111 ~I~v~~~dg~~~--~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~-~~~~p~gl~lD~~~~  187 (652)
                      .+.+.+.+|...  ..+.  .+..|.++++||.+|+|||+|++ ..+|.+.++++.....+... ...+|++|++|+.++
T Consensus       206 ~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          206 NNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             eEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence            577788888764  4443  36899999999999999999997 56999999998766444433 246899999999999


Q ss_pred             EEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCcc
Q psy5768         188 SAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVV  267 (652)
Q Consensus       188 ~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l  267 (652)
                      +|||++.....+..+-.+.....            ...+..+...                      ..      ..|+.
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~------------~~~~~~~ag~----------------------~g------~~g~~  322 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKR------------LTTPYIVCGQ----------------------QG------AKDWV  322 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTE------------ECCCEEEEEC----------------------TT------CBCCB
T ss_pred             EEEEEECCCCEEEEEeCCccccc------------ccceEEEecc----------------------CC------CCCCC
Confidence            99999987544433321100000            0000000000                      00      00000


Q ss_pred             ccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEE-EEEEEc-------CCCeEEEeecccccEE
Q psy5768         268 AQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNII-ELSYDY-------KRKTLFYSDIQKGTIN  339 (652)
Q Consensus       268 ~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~-~v~~D~-------~~~~lywsd~~~~~I~  339 (652)
                                                  ++..         ....+..|. ++.++.       ..+.||++|..+++|+
T Consensus       323 ----------------------------dg~~---------~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          323 ----------------------------DGVG---------KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             ----------------------------CEEG---------GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             ----------------------------CCCC---------cceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence                                        0000         001223455 566653       3578999999999999


Q ss_pred             EEeccCCcceEEe-e----------c-------cCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         340 SVFFNGSNHRVLL-E----------R-------QGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       340 ~~~~~g~~~~~i~-~----------~-------~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      +++.+|. ..++. .          +       +..|.|||+|..+++||++|..+++|.+++++
T Consensus       366 ~i~~~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          366 ILTPQGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EECTTSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            9997773 33333 2          1       34799999999889999999999999998764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=7.7e-18  Score=182.44  Aligned_cols=203  Identities=14%  Similarity=0.154  Sum_probs=160.1

Q ss_pred             ccceEEEEEEEc-CCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC----eEEEEEcC
Q psy5768         312 MMKNIIELSYDY-KRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA----TINKIDLD  386 (652)
Q Consensus       312 ~~~~~~~v~~D~-~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~----~I~~~~~~  386 (652)
                      .+.+|.+|++|+ ..+.||++|.. ++|+++++++.....+......|.+||+|+.++.||++|...+    .+.++..+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            356788999998 58999999988 8999999998766777777789999999999999999998543    45556655


Q ss_pred             CCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-CCCCCceEEEecCCCEEEEEe
Q psy5768         387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-DITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-~l~~P~glaiD~~~~~LYw~D  465 (652)
                      +....... +  ..+..|.+||+||..|+|||+|++..  +|++..+++.....+... ...+|+||++|+.+++|||+|
T Consensus       214 g~~~~~~~-l--~~~~~p~giavdp~~g~lyv~d~~~~--~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          214 SGFKVITE-L--TKGQNCNGAETHPINGELYFNSWNAG--QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GTSCSEEE-E--EECSSCCCEEECTTTCCEEEEETTTT--EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             Cceeeeee-e--ccCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            43211122 2  24789999999999999999999854  999999998765444433 346899999999999999999


Q ss_pred             CCCCeEEEEecCCCc-----eEEEecC--------------CCCcee-EEEEeC---------CEEEEEcCCCCeEEEEE
Q psy5768         466 ARLDKIERCDYDGTN-----RIVLSKI--------------SPLHPF-DMAVYG---------EFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       466 ~~~~~I~~~~ldG~~-----~~~l~~~--------------~~~~p~-glav~~---------~~lYwtd~~~~~I~~~~  516 (652)
                      ...++|.+++++|..     ..++...              .+.+|. ++++.+         +.||++|+.+++|.+++
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~  368 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT  368 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence            999999999999852     2333321              256799 899863         59999999999999998


Q ss_pred             ccCCc
Q psy5768         517 KYTGE  521 (652)
Q Consensus       517 k~~g~  521 (652)
                      . +|.
T Consensus       369 ~-~G~  372 (430)
T 3tc9_A          369 P-QGR  372 (430)
T ss_dssp             T-TSE
T ss_pred             C-CCc
Confidence            5 564

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.76  E-value=2.4e-16  Score=169.68  Aligned_cols=246  Identities=11%  Similarity=0.056  Sum_probs=173.9

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      +..|.    +||+|. .++|||+|...++|.++++++.....+... ...|. +++++..+.|||+++.....|.+.+.+
T Consensus       130 ~~~P~----~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          130 FKYMW----GIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCCEE----EEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             cCCce----EEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            55677    999994 778999999899999999998777666665 56788 999999899999998644489999887


Q ss_pred             CCCcEEEE----eecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCC
Q psy5768         163 GKKQTILA----QEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTN  238 (652)
Q Consensus       163 g~~~~~~~----~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n  238 (652)
                      +......+    ......|+++++|+.+++||+.+.+ +..+.+             .....                  
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-~~I~~~-------------d~~~~------------------  250 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN-KNFGRF-------------NVKTQ------------------  250 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTT-CEEEEE-------------ETTTC------------------
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECC-CcEEEE-------------ECCCC------------------
Confidence            66543323    2135789999999989999997664 221111             00000                  


Q ss_pred             CCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEE-
Q psy5768         239 PCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNII-  317 (652)
Q Consensus       239 ~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~-  317 (652)
                                                              ...+++..      .. .+.. .            .+|. 
T Consensus       251 ----------------------------------------~~~~~~~~------~~-~g~~-~------------~~P~~  270 (409)
T 3hrp_A          251 ----------------------------------------EVTLIKQL------EL-SGSL-G------------TNPGP  270 (409)
T ss_dssp             ----------------------------------------CEEEEEEC------CC-CSCC-C------------CSSCC
T ss_pred             ----------------------------------------CEEEEecc------cc-cCCC-C------------CCccc
Confidence                                                    00001000      00 0100 0            1123 


Q ss_pred             EEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ec--------------cCceeeeEEEccCCEEEEEeC-CCCeEE
Q psy5768         318 ELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ER--------------QGSVEGLAYEYVHNYLYWTCN-NDATIN  381 (652)
Q Consensus       318 ~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~--------------~~~~~glAvDw~~~~LYwtd~-~~~~I~  381 (652)
                      ++++|+..++||++|...++|++++.+|. ...+. ..              +..|.|||+|..++ ||++|. ..++|.
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~  348 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLR  348 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEE
Confidence            78899988999999999999999999886 33333 22              46799999998765 999999 999999


Q ss_pred             EEEcCCCCCccEEEEEe-------------CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         382 KIDLDSPKAQRIVVVRL-------------GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       382 ~~~~~~~~~~~~~~~~~-------------~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      ++++..  +...++...             ..+..|.+||++|. |.||++|++.+  +|.|..++
T Consensus       349 ~~~~~~--G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~--~Ir~i~~e  409 (409)
T 3hrp_A          349 KLDILD--GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGK--AIRKYAVE  409 (409)
T ss_dssp             EEETTT--TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTC--EEEEEEEC
T ss_pred             EEECCC--CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCC--eEEEEEeC
Confidence            999532  112233321             12578999999996 99999999865  88887763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.75  E-value=7.9e-17  Score=174.49  Aligned_cols=202  Identities=12%  Similarity=0.114  Sum_probs=153.4

Q ss_pred             ccceEEEEEEEcC--CCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC----CeEEEEEc
Q psy5768         312 MMKNIIELSYDYK--RKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND----ATINKIDL  385 (652)
Q Consensus       312 ~~~~~~~v~~D~~--~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~----~~I~~~~~  385 (652)
                      .+..|.+|++|+.  .+.|||+|.. ++|+++++.+.....+......|.+||+|+.++ ||++|...    ..+..+..
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence            4567889999984  8999999988 899999986655566667777899999999888 99999743    22444443


Q ss_pred             CCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec-CCCceEEEEc-CCCCCceEEEecCCCEEEE
Q psy5768         386 DSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS-GFGTESIITT-DITMPNALALDHQAEKLFW  463 (652)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld-G~~~~~l~~~-~l~~P~glaiD~~~~~LYw  463 (652)
                      .+... ....+  ..+..|.+||+||..|.|||+|++..  +|+|...+ |...+.+... ...++.+|++|+.+++|||
T Consensus       215 ~~~~~-~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~--~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          215 ASGFT-ERLSL--CNARGAKTCAVHPQNGKIYYTRYHHA--MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             GGTTC-CEEEE--EECSSBCCCEECTTTCCEEECBTTCS--EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred             CCCee-ccccc--cccCCCCEEEEeCCCCeEEEEECCCC--EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence            32211 11222  25789999999999999999998754  89999998 5432444432 3456778999999999999


Q ss_pred             EeCCCCeEEEEecCCCc-----eEEEecC--------------CCCceeEEEE---------e-CCEEEEEcCCCCeEEE
Q psy5768         464 GDARLDKIERCDYDGTN-----RIVLSKI--------------SPLHPFDMAV---------Y-GEFIFWTDWVIHAVLR  514 (652)
Q Consensus       464 ~D~~~~~I~~~~ldG~~-----~~~l~~~--------------~~~~p~glav---------~-~~~lYwtd~~~~~I~~  514 (652)
                      +|...++|.++++++..     +.++...              .+.+|.+|++         . ++.||++|+.+++|.+
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            99999999999998632     2333321              2568999999         5 5699999999999999


Q ss_pred             EEccCCc
Q psy5768         515 ANKYTGE  521 (652)
Q Consensus       515 ~~k~~g~  521 (652)
                      +++ +|.
T Consensus       370 ~~~-~G~  375 (433)
T 4hw6_A          370 LTP-EGR  375 (433)
T ss_dssp             ECT-TSE
T ss_pred             ECC-CCC
Confidence            986 563

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=9.5e-16  Score=164.98  Aligned_cols=204  Identities=13%  Similarity=0.069  Sum_probs=157.5

Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC-eEEEEEcCCCCC
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA-TINKIDLDSPKA  390 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~-~I~~~~~~~~~~  390 (652)
                      .+.++.+|++|. +++|||+|...++|+++++++.....+......|. +|+|+.++.|||++...+ +|.+++..+...
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            456789999995 56799999998999999998766666665566777 999999999999998655 899998765321


Q ss_pred             ccEEEEEe-C-CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE---c-CC-CCCc-eEEEecCCCEEE
Q psy5768         391 QRIVVVRL-G-QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT---T-DI-TMPN-ALALDHQAEKLF  462 (652)
Q Consensus       391 ~~~~~~~~-~-~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~---~-~l-~~P~-glaiD~~~~~LY  462 (652)
                       ...+-.. . ....|.+||++|..|.||+++..   .+|++..+++.....+..   . .. ..|. +|++|+.+++||
T Consensus       207 -~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~---~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          207 -PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN---KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             -EEEEEECCTTSCSCCCBCEECTTSSEEEEECTT---CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             -eEEeeeccchhcCCcEEEEEeCCCCeEEEEECC---CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence             1121111 2 56889999999999999998763   389999998776444421   1 11 1256 999999889999


Q ss_pred             EEeCCCCeEEEEecCCCceEEEecCC--------------CCceeEEEEe-CCEEEEEcC-CCCeEEEEEccCCce
Q psy5768         463 WGDARLDKIERCDYDGTNRIVLSKIS--------------PLHPFDMAVY-GEFIFWTDW-VIHAVLRANKYTGEE  522 (652)
Q Consensus       463 w~D~~~~~I~~~~ldG~~~~~l~~~~--------------~~~p~glav~-~~~lYwtd~-~~~~I~~~~k~~g~~  522 (652)
                      ++|...++|.+++++|.- .++....              +..|.+|+++ ++.||++|+ .+++|.+++..+|..
T Consensus       283 v~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            999999999999999973 3333322              5679999998 457999999 999999999666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=1.5e-14  Score=147.15  Aligned_cols=280  Identities=15%  Similarity=0.191  Sum_probs=192.3

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...|.    +|++|. .++||+++...+.|.+.+++|+.....+......|.+|++|+ +|.||+++.+ ...|.+.+.+
T Consensus        19 ~~~p~----~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPY----GITSSE-DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENG-ANKIGKLSKK   91 (300)
T ss_dssp             TCCEE----EEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTT
T ss_pred             CCCcc----eeeECC-CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECC-CCCEEEEecC-CCeEEEECCC
Confidence            56678    999996 578999998889999999997665544444467899999997 7899999874 4589998888


Q ss_pred             CCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCC
Q psy5768         163 GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGV  242 (652)
Q Consensus       163 g~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~  242 (652)
                      |+............|.+|++|. +++||+.+..++....+             .+                         
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-------------~~-------------------------  132 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKL-------------TA-------------------------  132 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEE-------------CT-------------------------
T ss_pred             CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEE-------------CC-------------------------
Confidence            6543222222346789999995 56788877643321111             00                         


Q ss_pred             CCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEE
Q psy5768         243 NNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD  322 (652)
Q Consensus       243 ~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D  322 (652)
                                                 ++                .+..+.+ ..              ....+.++++|
T Consensus       133 ---------------------------~g----------------~~~~~~~-~~--------------~~~~~~~i~~d  154 (300)
T 2qc5_A          133 ---------------------------DG----------------TIYEYDL-PN--------------KGSYPAFITLG  154 (300)
T ss_dssp             ---------------------------TS----------------CEEEEEC-SS--------------TTCCEEEEEEC
T ss_pred             ---------------------------CC----------------CEEEccC-CC--------------CCCCceeEEEC
Confidence                                       00                0011111 00              11235677888


Q ss_pred             cCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCC
Q psy5768         323 YKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQH  401 (652)
Q Consensus       323 ~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~  401 (652)
                      .. ++||+++...+.|++++.+|....... .....|.+|++|. .++||+++...+.|.+++.++.   ..........
T Consensus       155 ~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~  229 (300)
T 2qc5_A          155 SD-NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGE---ISEYDIPTPN  229 (300)
T ss_dssp             TT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCC---EEEEECSSTT
T ss_pred             CC-CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCc---EEEEECCCCC
Confidence            75 459999988889999988665433222 3456899999997 5689999998889999987442   2222222346


Q ss_pred             CCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         402 DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       402 ~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                      ..|.+|++|+. |.||+++.+..  .|.+.+.+|......+......|.+|++|.. ++||+++. . .|.+++.+
T Consensus       230 ~~~~~i~~d~~-g~l~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          230 ARPHAITAGKN-SEIWFTEWGAN--QIGRITNDNTIQEYQLQTENAEPHGITFGKD-GSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCEEEEEECST-TCEEEEETTTT--EEEEECTTSCEEEEECCSTTCCCCCEEECTT-SCEEEECS-S-EEEEEEEC
T ss_pred             CCceEEEECCC-CCEEEeccCCC--eEEEECCCCcEEEEECCccCCccceeEeCCC-CCEEEEcc-C-ceEEeCCC
Confidence            78999999995 78999997643  8999888764332222334568999999976 67999987 5 88887653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=2e-14  Score=146.17  Aligned_cols=279  Identities=15%  Similarity=0.175  Sum_probs=193.5

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      ....|.+|++|+. ++||+++  ...+.|.+++.+|......+... ...|.    +|++|. .++||+++...+.|.+.
T Consensus        18 ~~~~p~~i~~d~~-g~l~v~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~----~i~~~~-~g~l~v~~~~~~~v~~~   88 (300)
T 2qc5_A           18 PDSGPYGITSSED-GKVWFTQ--HKANKISSLDQSGRIKEFEVPTP-DAKVM----CLIVSS-LGDIWFTENGANKIGKL   88 (300)
T ss_dssp             TTCCEEEEEECTT-SCEEEEE--TTTTEEEEECTTSCEEEEECSST-TCCEE----EEEECT-TSCEEEEETTTTEEEEE
T ss_pred             CCCCcceeeECCC-CCEEEEc--CCCCeEEEECCCCceEEEECCCC-CCcce----eEEECC-CCCEEEEecCCCeEEEE
Confidence            4679999999964 7899999  77889999998855433222333 46677    999994 67899999888999999


Q ss_pred             EcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         116 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       116 ~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      +.+|+............|.+|++|+ +|.||+++.+ ...|.+.+.+|+............|.+|++|..+ +||+.+..
T Consensus        89 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~  165 (300)
T 2qc5_A           89 SKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN-GDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQ  165 (300)
T ss_dssp             CTTSCEEEEECSSTTCCEEEEEECS-TTCEEEEETT-TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTS-SEEEEETT
T ss_pred             CCCCCeEEecCCCCCCCCccceECC-CCCEEEEccC-CCeEEEECCCCCEEEccCCCCCCCceeEEECCCC-CEEEEecC
Confidence            9997765444333457899999997 7899999875 4589999888654432222235689999999754 48887765


Q ss_pred             CCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         196 KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       196 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      ++....+                           +.                                      ++    
T Consensus       166 ~~~i~~~---------------------------~~--------------------------------------~g----  176 (300)
T 2qc5_A          166 NNSIGRI---------------------------TN--------------------------------------TG----  176 (300)
T ss_dssp             TTEEEEE---------------------------CT--------------------------------------TC----
T ss_pred             CCeEEEE---------------------------CC--------------------------------------CC----
Confidence            3322111                           00                                      00    


Q ss_pred             ccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ec
Q psy5768         276 EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ER  354 (652)
Q Consensus       276 ~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~  354 (652)
                                  .+..+.+ .              .....+.++++|. ++.||+++...+.|++++.+|....... ..
T Consensus       177 ------------~~~~~~~-~--------------~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  228 (300)
T 2qc5_A          177 ------------KLEEYPL-P--------------TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTP  228 (300)
T ss_dssp             ------------CEEEEEC-S--------------STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             ------------cEEEeeC-C--------------CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCC
Confidence                        0001111 0              0112356788887 4689999988888999998665433323 35


Q ss_pred             cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEe-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         355 QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       355 ~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      ...|.+|++|..+ +||+++...+.|.+++.++.    ...... .....|.+|++++ .|.||++++   . .|.+...
T Consensus       229 ~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~---~-~i~~~~p  298 (300)
T 2qc5_A          229 NARPHAITAGKNS-EIWFTEWGANQIGRITNDNT----IQEYQLQTENAEPHGITFGK-DGSVWFALK---C-KIGKLNL  298 (300)
T ss_dssp             TCCEEEEEECSTT-CEEEEETTTTEEEEECTTSC----EEEEECCSTTCCCCCEEECT-TSCEEEECS---S-EEEEEEE
T ss_pred             CCCceEEEECCCC-CEEEeccCCCeEEEECCCCc----EEEEECCccCCccceeEeCC-CCCEEEEcc---C-ceEEeCC
Confidence            6689999999874 59999988899999987542    222322 2457899999999 588999986   2 6666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.72  E-value=1.9e-15  Score=163.61  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=165.3

Q ss_pred             eEEEEeee-cceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeeccc----ccEEEEeccCCcc-eEEe
Q psy5768         279 AFIMYSRV-NRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQK----GTINSVFFNGSNH-RVLL  352 (652)
Q Consensus       279 ~~Ll~s~~-~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~----~~I~~~~~~g~~~-~~i~  352 (652)
                      ..|+++.. ..|+++++.++ ..    ..+  ...+..+.+|++|...+ ||++|...    ..+..+...+... ...+
T Consensus       153 g~Lyv~D~~~~I~~id~~~g-~v----~~~--~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~  224 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQ-YV----DIK--TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL  224 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTT-EE----EEE--CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEECCCC-EE----EEe--ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc
Confidence            56777765 78999987322 21    122  12456789999999887 99999743    2355555544332 2333


Q ss_pred             eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc-EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEE
Q psy5768         353 ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR-IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRA  431 (652)
Q Consensus       353 ~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~  431 (652)
                      ..+..|.|||+|+..++|||+|...++|.+++.+...  . ..+........+.+||++|..++|||+|.+.+  +|.+.
T Consensus       225 ~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~--~I~~~  300 (433)
T 4hw6_A          225 CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH--CIYRV  300 (433)
T ss_dssp             EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT--EEEEE
T ss_pred             cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC--EEEEE
Confidence            4677999999999899999999999999999976321  2 34444444456778999998888999998865  99999


Q ss_pred             eecCCCc-----eEEEEc--------------CCCCCceEEE--------ecCCCEEEEEeCCCCeEEEEecCCCceEEE
Q psy5768         432 FFSGFGT-----ESIITT--------------DITMPNALAL--------DHQAEKLFWGDARLDKIERCDYDGTNRIVL  484 (652)
Q Consensus       432 ~ldG~~~-----~~l~~~--------------~l~~P~glai--------D~~~~~LYw~D~~~~~I~~~~ldG~~~~~l  484 (652)
                      .+|+...     .++...              .+.+|.||++        |...++||++|...++|.+++.+|.-....
T Consensus       301 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~  380 (433)
T 4hw6_A          301 DYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYA  380 (433)
T ss_dssp             EBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEE
T ss_pred             eCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEE
Confidence            9886432     334332              3568999999        236789999999999999999988433332


Q ss_pred             ecC----------------CCCceeEEEEe--CCEEEEEcCCCCeEEEEEc
Q psy5768         485 SKI----------------SPLHPFDMAVY--GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       485 ~~~----------------~~~~p~glav~--~~~lYwtd~~~~~I~~~~k  517 (652)
                      ...                .+.+|.||+++  ++.||++|+.+++|.++++
T Consensus       381 G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          381 GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            110                15679999999  6899999999999998875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=7.4e-15  Score=153.07  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=122.6

Q ss_pred             CCCCCCeeEEEEECCCCEEEEEeccCCc------------------------ceEEEEEcC-CCccEEEEeCCCcCCccC
Q psy5768          34 TSTLSKISSIAVWPVKGKMFWSNVTKQV------------------------VTIEMAFMD-GTKRETVVSQKKYPAVTA   88 (652)
Q Consensus        34 ~~~~~~~~~v~~d~~~~~lyw~d~~~~~------------------------~~I~~~~~d-gs~~~~v~~~~~~~~p~~   88 (652)
                      ...+..|.+|++|+. ++||+++  ..+                        ++|++++.+ |.......... +..|. 
T Consensus        20 ~~~l~~v~~va~d~~-G~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~p~-   94 (329)
T 3fvz_A           20 YLLPGQVSGVALDSK-NNLVIFH--RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL-FYLPH-   94 (329)
T ss_dssp             GCCCSCEEEEEECTT-CCEEEEE--CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT-CSSEE-
T ss_pred             ceecCCceEEEECCC-CCEEEEe--CCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc-cCCce-
Confidence            347889999999975 7899999  655                        368899886 55433332233 67788 


Q ss_pred             CCCcEEEEccCCcEEEEeCCCCEEEEEEcCCC--cEEEEE--------eCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5768          89 CNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ--YRYVLI--------SGGVDQPSALAVDPESGYLFWSESGKIPLIAR  158 (652)
Q Consensus        89 ~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~--~~~~l~--------~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~  158 (652)
                         +||+|. .++||++|...++|.+.+++|.  ....+.        ...+..|.+|++||.+|.||++|.....+|.+
T Consensus        95 ---gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           95 ---GLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             ---EEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             ---EEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence               999996 6679999999999999999998  444443        23466899999999899999999623679999


Q ss_pred             EeCCCCCcEEEEee---------cccCceeEEEeccCCEEEEEeCCCCcE
Q psy5768         159 AGLDGKKQTILAQE---------IIMPIKDITLDLKFFSAFYRNLSKGNI  199 (652)
Q Consensus       159 ~~ldg~~~~~~~~~---------~~~~p~gl~lD~~~~~ly~~d~~g~~~  199 (652)
                      .+.+|.....+...         .+..|.||++|+.+++||++|...+.+
T Consensus       171 ~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I  220 (329)
T 3fvz_A          171 FSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI  220 (329)
T ss_dssp             ECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE
Confidence            99999877666432         256799999999889999999874433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.1e-14  Score=157.89  Aligned_cols=266  Identities=14%  Similarity=0.119  Sum_probs=181.6

Q ss_pred             CCCCeeEEEEEC-CCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC--CcCCccCCCCcEEE-------EccCCcEEEE
Q psy5768          36 TLSKISSIAVWP-VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK--KYPAVTACNLHIAV-------DWIAQNIYWS  105 (652)
Q Consensus        36 ~~~~~~~v~~d~-~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~--~~~~p~~~~~~lav-------Dw~~~~lY~~  105 (652)
                      .+..|.+|++|| .+++||+++  ....+|+++++.+....+++..+  .+..|.    +||+       |...+.||++
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~--~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~----~ia~~~~~~~~d~~G~~lyva  210 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICY--DGHKAIQLIDLKNRMLSSPLNINTIPTNRIR----SIAFNKKIEGYADEAEYMIVA  210 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEE--ETEEEEEEEETTTTEEEEEECCTTSSCSBEE----EEEECCCBTTTBCTTCEEEEE
T ss_pred             ccCCCCEEEEccCCCCEEEEEE--CCCCeEEEEECCCCEEEEEEccCccccCCCc----EEEEeecccccCCCCCEEEEE
Confidence            467899999999 589999999  77789999999988888887654  145678    9999       9877779999


Q ss_pred             eCCC------CEEEEEEcC--CCcE-----EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC--------CC
Q psy5768         106 DPKE------NVIEVARLT--GQYR-----YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--------GK  164 (652)
Q Consensus       106 d~~~------~~I~v~~~d--g~~~-----~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld--------g~  164 (652)
                      |...      ..|.+++.+  |...     ..+.  .+.+|.++++||.+|+||+++++ ...|.+.+++        |.
T Consensus       211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~-~g~V~r~d~~~~~~~~~tg~  287 (496)
T 3kya_A          211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGG  287 (496)
T ss_dssp             ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETT-TTEEEEECHHHHHHHHHTTC
T ss_pred             eCCCCCcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECC-CCEEEEEecccccccccCce
Confidence            9765      237777433  4543     3333  35799999999999999999996 5689999987        33


Q ss_pred             C-----------cEEEEee-cccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeec
Q psy5768         165 K-----------QTILAQE-IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKD  232 (652)
Q Consensus       165 ~-----------~~~~~~~-~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~  232 (652)
                      .           ...++.. .-.+|.+|++|+.++.||++|.....++.+-.+.... .+           ....++-..
T Consensus       288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~-----------~~~~~~aG~  355 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EF-----------ITPYNFVGG  355 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EE-----------CCCEEEEEB
T ss_pred             eecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-ee-----------cccEEecCC
Confidence            2           1123322 2468999999999999999998744444332211000 00           000000000


Q ss_pred             cCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccc
Q psy5768         233 AQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTM  312 (652)
Q Consensus       233 ~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~  312 (652)
                                           .+       ..|+                            .|+...         ...
T Consensus       356 ---------------------~g-------~~G~----------------------------~DG~~~---------~a~  370 (496)
T 3kya_A          356 ---------------------YK-------QSGY----------------------------RDDVGT---------EAR  370 (496)
T ss_dssp             ---------------------TT-------BCCC----------------------------BCCBGG---------GCB
T ss_pred             ---------------------CC-------CCcc----------------------------cCCccc---------ccc
Confidence                                 00       0000                            011000         022


Q ss_pred             cceEE-EEEEEc------CCCeEEEeecccccEEEEeccCCcceEEe-e-----------------------ccCceeee
Q psy5768         313 MKNII-ELSYDY------KRKTLFYSDIQKGTINSVFFNGSNHRVLL-E-----------------------RQGSVEGL  361 (652)
Q Consensus       313 ~~~~~-~v~~D~------~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~-----------------------~~~~~~gl  361 (652)
                      |..|. ++..|.      ..+.||++|..+++|+++..+|. ..++. .                       .+..|.||
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            34456 555653      56789999999999999998773 34443 2                       13579999


Q ss_pred             EEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         362 AYEYVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       362 AvDw~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      |+|..+++||++|..+++|+++++++.
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            999888999999999999999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=8.8e-14  Score=141.29  Aligned_cols=288  Identities=16%  Similarity=0.165  Sum_probs=189.6

Q ss_pred             EEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEE
Q psy5768         124 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIIS  203 (652)
Q Consensus       124 ~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~  203 (652)
                      .-+......|++|++|+ +|.||+++.. ...|.+.+.+|.............|.+|++|. +++||+.+..++....+ 
T Consensus         8 ~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-   83 (299)
T 2z2n_A            8 LNLTNQDTGPYGITVSD-KGKVWITQHK-ANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRI-   83 (299)
T ss_dssp             EECCSSSCCEEEEEECT-TSCEEEEETT-TTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE-
T ss_pred             EcCCCcCCCccceEECC-CCCEEEEecC-CCcEEEEcCCCCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEE-
Confidence            33444567899999998 6899999864 45888888884432222222346789999986 46677776542221111 


Q ss_pred             ecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEE
Q psy5768         204 LSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMY  283 (652)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~  283 (652)
                                                +.                                      ++            
T Consensus        84 --------------------------~~--------------------------------------~g------------   87 (299)
T 2z2n_A           84 --------------------------TK--------------------------------------KG------------   87 (299)
T ss_dssp             --------------------------CT--------------------------------------TS------------
T ss_pred             --------------------------CC--------------------------------------CC------------
Confidence                                      00                                      00            


Q ss_pred             eeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeE
Q psy5768         284 SRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLA  362 (652)
Q Consensus       284 s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glA  362 (652)
                          .+..+.+ ..              ....+.++++|. +++||+++...+.|++++.+|....... .....|.+|+
T Consensus        88 ----~~~~~~~-~~--------------~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           88 ----IIKEYTL-PN--------------PDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT  147 (299)
T ss_dssp             ----CEEEEEC-SS--------------TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred             ----cEEEEeC-CC--------------cCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence                0011111 00              012356777885 5689999887888999988654433322 3456799999


Q ss_pred             EEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE
Q psy5768         363 YEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII  442 (652)
Q Consensus       363 vDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~  442 (652)
                      +|.. ++||+++...+.|.+++.++.   ............|.+|++++. |.||+++....  .|.+...+|.......
T Consensus       148 ~~~~-g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~--~i~~~~~~g~~~~~~~  220 (299)
T 2z2n_A          148 LGSD-NALWFTENQNNAIGRITESGD---ITEFKIPTPASGPVGITKGND-DALWFVEIIGN--KIGRITTSGEITEFKI  220 (299)
T ss_dssp             ECTT-SCEEEEETTTTEEEEECTTCC---EEEEECSSTTCCEEEEEECTT-SSEEEEETTTT--EEEEECTTCCEEEEEC
T ss_pred             EcCC-CCEEEEeCCCCEEEEEcCCCc---EEEeeCCCCCCcceeEEECCC-CCEEEEccCCc--eEEEECCCCcEEEEEC
Confidence            9975 589999988889999987432   222212234678999999994 78999997643  8888888554322112


Q ss_pred             EcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCC
Q psy5768         443 TTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       443 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      ......|.+|++|.. ++||+++...+.|..++.+|.-+..........|.+|++.++.||+++. .+.|.+++..++
T Consensus       221 ~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          221 PTPNARPHAITAGAG-IDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSTTCCEEEEEECST-TCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCCCceeEEECCC-CCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            223567999999976 5699999888999999997743333233335789999995579999986 678888886543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.1e-14  Score=155.77  Aligned_cols=233  Identities=11%  Similarity=0.129  Sum_probs=169.8

Q ss_pred             eEEEEeee--cceeEEecCCCCCCCCCceeeeec-cccceEEEEEE-------EcCCCeEEEeecccc------cEEEEe
Q psy5768         279 AFIMYSRV--NRIDSIHMTDKSDLNSPFESIRNS-TMMKNIIELSY-------DYKRKTLFYSDIQKG------TINSVF  342 (652)
Q Consensus       279 ~~Ll~s~~--~~i~~i~l~~~~~~~~p~~~~~~~-~~~~~~~~v~~-------D~~~~~lywsd~~~~------~I~~~~  342 (652)
                      ..|+++..  ..|++|++ ....+.   ..+... ..+..+.++++       |...++||++|...+      .|+.+.
T Consensus       152 ~~Lyv~~~~~~~i~~ID~-~~~~v~---~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~  227 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDL-KNRMLS---SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIK  227 (496)
T ss_dssp             EEEEEEEETEEEEEEEET-TTTEEE---EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEC-CCCEEE---EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEe
Confidence            44555543  57888887 332222   122211 13456899999       998889999998752      377775


Q ss_pred             cc--CCcce----EEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC-------CCCC----------ccEEEEEeC
Q psy5768         343 FN--GSNHR----VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD-------SPKA----------QRIVVVRLG  399 (652)
Q Consensus       343 ~~--g~~~~----~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~-------~~~~----------~~~~~~~~~  399 (652)
                      ..  |....    ..+.....|.|+|+|+..+.||+++...++|.+++++       +...          ..+.+....
T Consensus       228 r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~  307 (496)
T 3kya_A          228 RNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA  307 (496)
T ss_dssp             CCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS
T ss_pred             cCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC
Confidence            33  33321    2334566899999999999999999999999999986       3221          012445555


Q ss_pred             CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCc-----eEEEEc--------------CCCCCc-eEEEec---
Q psy5768         400 QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT-----ESIITT--------------DITMPN-ALALDH---  456 (652)
Q Consensus       400 ~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~-----~~l~~~--------------~l~~P~-glaiD~---  456 (652)
                      ....|++||++|...+||++|++.+  +|.|..+||...     .++...              .+..|. |+++|.   
T Consensus       308 ~~~~p~~ia~~p~G~~lYvaD~~~h--~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~  385 (496)
T 3kya_A          308 DPSWEFQIFIHPTGKYAYFGVINNH--YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDY  385 (496)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTT--EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTC
T ss_pred             CCCCceEEEEcCCCCEEEEEeCCCC--EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccc
Confidence            5678999999998888999998865  999999998753     344432              356799 888873   


Q ss_pred             ---CCCEEEEEeCCCCeEEEEecCCCceEEEecC-----------------------CCCceeEEEEeC--CEEEEEcCC
Q psy5768         457 ---QAEKLFWGDARLDKIERCDYDGTNRIVLSKI-----------------------SPLHPFDMAVYG--EFIFWTDWV  508 (652)
Q Consensus       457 ---~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~-----------------------~~~~p~glav~~--~~lYwtd~~  508 (652)
                         ..+.||++|...++|.+++.+|. ..++...                       .+.+|.||+++.  +.||++|..
T Consensus       386 ~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          386 TGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             CSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             cccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence               56899999999999999998884 4444321                       157899999995  799999999


Q ss_pred             CCeEEEEEcc
Q psy5768         509 IHAVLRANKY  518 (652)
Q Consensus       509 ~~~I~~~~k~  518 (652)
                      +++|.+++..
T Consensus       465 N~rIrki~~~  474 (496)
T 3kya_A          465 GHTIRTISME  474 (496)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEECC
Confidence            9999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=9.4e-14  Score=141.09  Aligned_cols=281  Identities=15%  Similarity=0.187  Sum_probs=188.3

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...|.    +|++|. .++||+++...+.|.+.+++|.............|.+|++|+ +|.||+++.+ ...|.+.+.+
T Consensus        14 ~~~~~----~i~~d~-~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~   86 (299)
T 2z2n_A           14 DTGPY----GITVSD-KGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTENA-ANKIGRITKK   86 (299)
T ss_dssp             SCCEE----EEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTT
T ss_pred             CCCcc----ceEECC-CCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECC-CCCEEEeCCC-CCeEEEECCC
Confidence            45677    999996 678999998788999999996655444333457899999998 7899999864 4579998888


Q ss_pred             CCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCC
Q psy5768         163 GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGV  242 (652)
Q Consensus       163 g~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~  242 (652)
                      |+............|.+|++|. +++||+.+..++....+             .+                         
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~-------------d~-------------------------  127 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRI-------------TD-------------------------  127 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE-------------CT-------------------------
T ss_pred             CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEE-------------CC-------------------------
Confidence            6532222222356799999986 56788876653322111             00                         


Q ss_pred             CCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEE
Q psy5768         243 NNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD  322 (652)
Q Consensus       243 ~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D  322 (652)
                                                 ++                .+..+.+ ..              ....+.++++|
T Consensus       128 ---------------------------~g----------------~~~~~~~-~~--------------~~~~~~~i~~~  149 (299)
T 2z2n_A          128 ---------------------------DG----------------KIREYEL-PN--------------KGSYPSFITLG  149 (299)
T ss_dssp             ---------------------------TC----------------CEEEEEC-SS--------------TTCCEEEEEEC
T ss_pred             ---------------------------CC----------------CEEEecC-CC--------------CCCCCceEEEc
Confidence                                       00                0001111 00              01234567777


Q ss_pred             cCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCC
Q psy5768         323 YKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQH  401 (652)
Q Consensus       323 ~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~  401 (652)
                      .. ++||+++...+.|++++.+|....... .....|.+|++|.. ++||+++...+.|.+++.++.   ..........
T Consensus       150 ~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~  224 (299)
T 2z2n_A          150 SD-NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGE---ITEFKIPTPN  224 (299)
T ss_dssp             TT-SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCC---EEEEECSSTT
T ss_pred             CC-CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECCCCc---EEEEECCCCC
Confidence            54 579998887788999988554332212 34567999999976 569999988889999987432   2222122245


Q ss_pred             CCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCC
Q psy5768         402 DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG  478 (652)
Q Consensus       402 ~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG  478 (652)
                      ..|.+|++++. |.||+++++..  .|.+...+|......+......|.+|++  ..++||+++. .+.|.+++.+.
T Consensus       225 ~~~~~i~~~~~-g~l~v~~~~~~--~i~~~d~~g~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          225 ARPHAITAGAG-IDLWFTEWGAN--KIGRLTSNNIIEEYPIQIKSAEPHGICF--DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             CCEEEEEECST-TCEEEEETTTT--EEEEEETTTEEEEEECSSSSCCEEEEEE--CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CCceeEEECCC-CCEEEeccCCc--eEEEECCCCceEEEeCCCCCCccceEEe--cCCCEEEEec-CCcEEEEEcCc
Confidence            78999999995 78999997643  8988888663222212233567999999  6789999986 57888887764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=3e-14  Score=148.44  Aligned_cols=223  Identities=17%  Similarity=0.134  Sum_probs=159.1

Q ss_pred             ccceEEEEEEEcCCCeEEEeeccc------------------------ccEEEEecc-CCcceEEe-eccCceeeeEEEc
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQK------------------------GTINSVFFN-GSNHRVLL-ERQGSVEGLAYEY  365 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~------------------------~~I~~~~~~-g~~~~~i~-~~~~~~~glAvDw  365 (652)
                      .+..+.+|++|+. ++||+++...                        ++|++++.+ |....... ..+..|.|||+|.
T Consensus        22 ~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             ecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            4577899999986 6899998866                        368888875 43322222 3456899999997


Q ss_pred             cCCEEEEEeCCCCeEEEEEcCCCCCccEEEEE-------eCCCCCceEEEEeCCCCEEEEEec-CCCCCceEEEeecCCC
Q psy5768         366 VHNYLYWTCNNDATINKIDLDSPKAQRIVVVR-------LGQHDKPRGIDIDSCDSRIYWTNW-NSHLPSIQRAFFSGFG  437 (652)
Q Consensus       366 ~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~-------~~~~~~P~~Iavdp~~g~Lywtd~-~~~~~~I~r~~ldG~~  437 (652)
                      .++ ||++|...++|.+++.++.......+-.       ...+..|.+||++|..|.||++|. +..  +|.+...+|..
T Consensus       101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~--~I~~~~~~g~~  177 (329)
T 3fvz_A          101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS--RIVQFSPSGKF  177 (329)
T ss_dssp             TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC--EEEEECTTSCE
T ss_pred             CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC--eEEEEcCCCCE
Confidence            555 9999999999999998764211122111       134568999999998899999995 543  89999988876


Q ss_pred             ceEEEEc---------CCCCCceEEEecCCCEEEEEeCCCCeEEEEecC-CCceEEEecCC-CCceeEEEEeCCE-----
Q psy5768         438 TESIITT---------DITMPNALALDHQAEKLFWGDARLDKIERCDYD-GTNRIVLSKIS-PLHPFDMAVYGEF-----  501 (652)
Q Consensus       438 ~~~l~~~---------~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld-G~~~~~l~~~~-~~~p~glav~~~~-----  501 (652)
                      ...+...         .+..|.||++|+.+++||++|...++|..++.+ |.....+.... ...|+++++..+.     
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            5555422         345699999998889999999999999999998 77666664322 3467776665544     


Q ss_pred             --EEEEcCCCCeEEEEEccCCceEEEEe---cccCCcceeEE
Q psy5768         502 --IFWTDWVIHAVLRANKYTGEEVYTLR---KNIRRPMGIVA  538 (652)
Q Consensus       502 --lYwtd~~~~~I~~~~k~~g~~~~~~~---~~~~~p~~i~~  538 (652)
                        +|+++.....|+.++..+|+....+.   ..+..|.+|++
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~  299 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA  299 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence              44455566688888877887666653   23344555544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1.1e-14  Score=146.19  Aligned_cols=195  Identities=16%  Similarity=0.257  Sum_probs=145.0

Q ss_pred             eEEEEEEEcCCCeEEE-eecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         315 NIIELSYDYKRKTLFY-SDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       315 ~~~~v~~D~~~~~lyw-sd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      .+.++++|... +||+ ++...+.|.+++.++.....+. .....|.+|++|..+ +||+++. .+.|.+++.++..   
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~---   98 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN---   98 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC---
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce---
Confidence            78999999754 6999 8888899999987654433332 455689999999865 5999998 7899999876642   


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE-EcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII-TTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~-~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ...+.......|.+|+++| .|.||+++.+..  .|.+... |+...... ...+..|.+|++|..+ +||+++...+.|
T Consensus        99 ~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~--~i~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i  173 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNN--RVVKLAA-GSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRV  173 (270)
T ss_dssp             CEECCCCSCSSEEEEEECT-TCCEEEEEGGGT--EEEEECT-TCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEE
T ss_pred             EeeeecCCcCCCcceEECC-CCCEEEEECCCC--EEEEEEC-CCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEE
Confidence            2222224457899999999 678999997643  7888743 33333322 2345689999999754 699999988999


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCC
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      ..++.++..........+..|.+|+++. ++||++++..+.|.+++..+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            9999998776554444457899999985 499999999999999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=3.5e-13  Score=136.76  Aligned_cols=261  Identities=11%  Similarity=0.087  Sum_probs=182.7

Q ss_pred             ecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC----CcCCccCCCCc
Q psy5768          17 NLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK----KYPAVTACNLH   92 (652)
Q Consensus        17 ~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~----~~~~p~~~~~~   92 (652)
                      ..++.+...+.. .+.....+..|.+|++++. +.||++|  ...++|++++++|.....+...+    .+..|.    +
T Consensus        10 ~~~~~~~~~~g~-~g~~~g~~~~p~~v~~~~~-g~l~v~~--~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~----~   81 (286)
T 1q7f_A           10 RQRMIYHCKFGE-FGVMEGQFTEPSGVAVNAQ-NDIIVAD--TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN----R   81 (286)
T ss_dssp             CEEECEEEEECC-BSSSTTCBSCEEEEEECTT-CCEEEEE--GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE----E
T ss_pred             cceeEEEEeccC-CCCCCCccCCCceEEECCC-CCEEEEE--CCCCEEEEECCCCcEEEEecccCCCcccccCce----E
Confidence            344556666664 4556678999999999975 6799999  77889999999987655543211    135677    9


Q ss_pred             EEEEccCCcEEEEeCC-CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEe
Q psy5768          93 IAVDWIAQNIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ  171 (652)
Q Consensus        93 lavDw~~~~lY~~d~~-~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~  171 (652)
                      ||++...++||+++.. .+.|.+.+.+|+....+.......|++|++|| +|.||+++.+ ...|.+.+.+|.....+..
T Consensus        82 i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~  159 (286)
T 1q7f_A           82 VAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGC  159 (286)
T ss_dssp             EEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC-CCEEEEEcCCCCEEEEeCC
Confidence            9997678999999964 78999999999877666444567899999998 6789999975 5689999888875555433


Q ss_pred             -ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCccc
Q psy5768         172 -EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAEL  250 (652)
Q Consensus       172 -~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~l  250 (652)
                       ..+..|++|++|+. ++||+++...+..+                           +|+.                   
T Consensus       160 ~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~---------------------------~~~~-------------------  192 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDK-QEIFISDNRAHCVK---------------------------VFNY-------------------  192 (286)
T ss_dssp             TTTCSSEEEEEECSS-SEEEEEEGGGTEEE---------------------------EEET-------------------
T ss_pred             CCccCCcEEEEECCC-CCEEEEECCCCEEE---------------------------EEcC-------------------
Confidence             23668999999975 56888776422211                           1110                   


Q ss_pred             ceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEE
Q psy5768         251 CLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFY  330 (652)
Q Consensus       251 C~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lyw  330 (652)
                                         ++               ..+..+.. .+              .+..+.++++|+. ++||+
T Consensus       193 -------------------~g---------------~~~~~~~~-~g--------------~~~~p~~i~~d~~-G~l~v  222 (286)
T 1q7f_A          193 -------------------EG---------------QYLRQIGG-EG--------------ITNYPIGVGINSN-GEILI  222 (286)
T ss_dssp             -------------------TC---------------CEEEEESC-TT--------------TSCSEEEEEECTT-CCEEE
T ss_pred             -------------------CC---------------CEEEEEcc-CC--------------ccCCCcEEEECCC-CCEEE
Confidence                               00               00011110 00              0123567888874 58999


Q ss_pred             eecccc-cEEEEeccCCcceEEeec--cCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         331 SDIQKG-TINSVFFNGSNHRVLLER--QGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       331 sd~~~~-~I~~~~~~g~~~~~i~~~--~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      ++...+ +|.+.+.+|.....+...  ...|.+||+|.. ++||+++. .++|.+.++.
T Consensus       223 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~-g~l~vs~~-~~~v~v~~~~  279 (286)
T 1q7f_A          223 ADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD-GSVVLASK-DYRLYIYRYV  279 (286)
T ss_dssp             EECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETT-TEEEEEET-TTEEEEEECS
T ss_pred             EeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCC-CcEEEECC-CCeEEEEEcc
Confidence            998776 899999887655555432  335899999985 57999975 6788877764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.62  E-value=7.2e-12  Score=130.29  Aligned_cols=279  Identities=13%  Similarity=0.090  Sum_probs=192.8

Q ss_pred             CCeeEEEEECCCCEEEEEeccCC------cceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCE
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQ------VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV  111 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~------~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~  111 (652)
                      ..|.++++++.+++||+++  ..      .+.|+.+++........+..+  ..|.    ++++++.++.+|+++...+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~--~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~----~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLAT--SQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPF----GATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEE--CCCTTTEESEEEEEECTTTCCEEEEEEES--SCCC----SEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEc--CCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcc----eEEECCCCCEEEEEecCCCE
Confidence            4688999999999999998  54      568999988755433333333  3477    99999988889999998899


Q ss_pred             EEEEEcCCCcE-EEEEeCCCC--------CceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEE
Q psy5768         112 IEVARLTGQYR-YVLISGGVD--------QPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITL  182 (652)
Q Consensus       112 I~v~~~dg~~~-~~l~~~~~~--------~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~l  182 (652)
                      |.+.+++.... ..+-...-.        .|++++++|..++||+++++....|.+.++........+...-..|.++++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            99999865433 333222111        289999999888999999766678999888755444333322345899999


Q ss_pred             eccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEE
Q psy5768         183 DLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCAC  262 (652)
Q Consensus       183 D~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C  262 (652)
                      ++.+++||+.+.++ ....                           ++..                              
T Consensus       193 s~dg~~l~~~~~~~-~i~~---------------------------~d~~------------------------------  214 (353)
T 3vgz_A          193 DSEGKRLYTTNADG-ELIT---------------------------IDTA------------------------------  214 (353)
T ss_dssp             ETTTTEEEEECTTS-EEEE---------------------------EETT------------------------------
T ss_pred             CCCCCEEEEEcCCC-eEEE---------------------------EECC------------------------------
Confidence            99888888876642 2111                           1000                              


Q ss_pred             eCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEe
Q psy5768         263 AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVF  342 (652)
Q Consensus       263 ~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~  342 (652)
                             +               +..+..+.+ ....            ....+.++++++..++||+++...+.|+.++
T Consensus       215 -------~---------------~~~~~~~~~-~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          215 -------D---------------NKILSRKKL-LDDG------------KEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             -------T---------------TEEEEEEEC-CCSS------------SCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             -------C---------------CeEEEEEEc-CCCC------------CCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence                   0               000111111 0000            0123567889998899999998888999998


Q ss_pred             ccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecC
Q psy5768         343 FNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN  422 (652)
Q Consensus       343 ~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~  422 (652)
                      +........+ ....+.+++++..++.||.++...+.|.++++...    +.+........|.+++++|...+||++...
T Consensus       260 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          260 TRNGNILAKV-AAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY----KVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTCCEEEEE-ECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCcEEEEE-EcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC----eEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            8643332222 23457899999999999999998899999997642    333333345689999999988899999865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=1.8e-14  Score=144.60  Aligned_cols=196  Identities=18%  Similarity=0.238  Sum_probs=151.1

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.++++|.. ++||+++. .+.|++++.++.....+. .+...|.+|++|.. ++||+++...+.|.+++....   .
T Consensus        67 ~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~---~  140 (270)
T 1rwi_B           67 YQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSK---T  140 (270)
T ss_dssp             CSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCC---S
T ss_pred             CCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCc---e
Confidence            45778899985 55999998 789999998886554443 45578999999985 569999998889999864322   2


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIE  472 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  472 (652)
                      ...........|.+|+++| .|.||+++.+..  .|.+...++..........+..|.+|++|..+ +||+++...+.|.
T Consensus       141 ~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~  216 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNN--RVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVV  216 (270)
T ss_dssp             CEECCCCSCCSCCCEEECT-TCCEEEEEGGGT--EEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEE
T ss_pred             eEeeccccCCCceeEEEeC-CCCEEEEECCCC--EEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEE
Confidence            2222223457899999999 567999998643  89999988876544333455789999999765 9999999999999


Q ss_pred             EEecCCCceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccC
Q psy5768         473 RCDYDGTNRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       473 ~~~ldG~~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      .++.+|.....+....+..|.+|++. ++.||++++..++|..+++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            99999877655444345789999998 468999999999998887653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=1.6e-13  Score=140.75  Aligned_cols=216  Identities=13%  Similarity=0.165  Sum_probs=158.4

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..-..+..+|+.++.|||+|...++|++++.++...+. ...-..|.+|++|..++ ||++.  .+.|.+++..+..  .
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~--~   85 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQS--A   85 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTE--E
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCc--E
Confidence            34578999999999999999999999999988754433 33335799999998777 76665  4688888875421  2


Q ss_pred             EEEEEeC---CCCCceEEEEeCCCCEEEEEecCC---------CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCE
Q psy5768         393 IVVVRLG---QHDKPRGIDIDSCDSRIYWTNWNS---------HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEK  460 (652)
Q Consensus       393 ~~~~~~~---~~~~P~~Iavdp~~g~Lywtd~~~---------~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~  460 (652)
                      +.+....   ....|.+|++|| .|.||+++++.         ....|++...+|...  .+...+..|+||+++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK--KYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE--EEEEEESBEEEEEECTTSCE
T ss_pred             EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE--EEeeccccccceEEcCCCCE
Confidence            3333321   234688999999 57799987542         234788888876433  23446678999999999999


Q ss_pred             EEEEeCCCCeEEEEecC---CC--ceEEEecCC--CCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEecccCC
Q psy5768         461 LFWGDARLDKIERCDYD---GT--NRIVLSKIS--PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRR  532 (652)
Q Consensus       461 LYw~D~~~~~I~~~~ld---G~--~~~~l~~~~--~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~  532 (652)
                      |||+|...++|.+++++   |.  +++++....  ...|.+|+++ +++||++++..+.|.++++.+|+....+......
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~  242 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK  242 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence            99999999999999985   32  234443321  3579999998 5799999999999999999888877766644344


Q ss_pred             cceeE
Q psy5768         533 PMGIV  537 (652)
Q Consensus       533 p~~i~  537 (652)
                      |..++
T Consensus       243 ~t~~~  247 (297)
T 3g4e_A          243 TTSCC  247 (297)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            44443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.60  E-value=3.5e-13  Score=139.79  Aligned_cols=258  Identities=14%  Similarity=0.118  Sum_probs=170.8

Q ss_pred             EeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEee-------------------cccCceeEEEeccC
Q psy5768         126 ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-------------------IIMPIKDITLDLKF  186 (652)
Q Consensus       126 ~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~-------------------~~~~p~gl~lD~~~  186 (652)
                      +.+.+..|.++++|+ +|.+||++.. ..+|.+.+.++.....+...                   ....|.||++|..+
T Consensus        14 ~~g~~~~p~~i~~d~-~g~~l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDS-TNKGFYTSVQ-DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             EECSSSCCCCEECCT-TCSSEEEECT-TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             cCCccCCceEEEEcC-CCCEEEEEcC-CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            445578999999998 5887788764 56899998887655544321                   13579999999877


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCc
Q psy5768         187 FSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGV  266 (652)
Q Consensus       187 ~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~  266 (652)
                      ++||+++..++ ...+             .+...    .++.                                      
T Consensus        92 g~l~v~d~~~~-i~~~-------------d~~~g----~~~~--------------------------------------  115 (322)
T 2fp8_A           92 NQLYIVDCYYH-LSVV-------------GSEGG----HATQ--------------------------------------  115 (322)
T ss_dssp             TEEEEEETTTE-EEEE-------------CTTCE----ECEE--------------------------------------
T ss_pred             CcEEEEECCCC-EEEE-------------eCCCC----EEEE--------------------------------------
Confidence            89999987632 1111             00000    0000                                      


Q ss_pred             cccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecc------------
Q psy5768         267 VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQ------------  334 (652)
Q Consensus       267 l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~------------  334 (652)
                                      +..       .. .+       ..      +..+.++++|...++||++|..            
T Consensus       116 ----------------~~~-------~~-~~-------~~------~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A          116 ----------------LAT-------SV-DG-------VP------FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             ----------------EES-------EE-TT-------EE------CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             ----------------ecc-------cC-CC-------Cc------ccccceEEEecCCCEEEEECCcccccccccceeh
Confidence                            000       00 00       00      1224567778756689998864            


Q ss_pred             -----cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc-cEEEEEeCCCCCceEEE
Q psy5768         335 -----KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ-RIVVVRLGQHDKPRGID  408 (652)
Q Consensus       335 -----~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~-~~~~~~~~~~~~P~~Ia  408 (652)
                           .++|++++.++...+.+...+..|.|||++..++.||++|...++|.++++++.... .+.+...  .. |.+|+
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~  235 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIK  235 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeE
Confidence                 267888887755555555777899999999999999999999999999998863322 2333322  23 99999


Q ss_pred             EeCCCCEEEEEecC--------CCCCceEEEeecCCCceEEEEcC---CCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         409 IDSCDSRIYWTNWN--------SHLPSIQRAFFSGFGTESIITTD---ITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       409 vdp~~g~Lywtd~~--------~~~~~I~r~~ldG~~~~~l~~~~---l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                      +|+ .|.||+++++        .....|.+.+.+|.....+....   +.+|.+++.+  .++||+++...+.|.+++++
T Consensus       236 ~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          236 RNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred             ECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence            999 6789999976        11237888888876544443322   5678888875  78999999999999999998


Q ss_pred             CCceEEE
Q psy5768         478 GTNRIVL  484 (652)
Q Consensus       478 G~~~~~l  484 (652)
                      .....++
T Consensus       313 ~~~~~~~  319 (322)
T 2fp8_A          313 KKGNSFV  319 (322)
T ss_dssp             -------
T ss_pred             cccCccc
Confidence            7655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.57  E-value=1.6e-13  Score=142.37  Aligned_cols=208  Identities=12%  Similarity=0.118  Sum_probs=148.9

Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee--------------------ccCceeeeEEEccCCEEE
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE--------------------RQGSVEGLAYEYVHNYLY  371 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~--------------------~~~~~~glAvDw~~~~LY  371 (652)
                      .+..+.++++|.. +.+||++...++|++++.++...+.+..                    ....|.|||+|...++||
T Consensus        17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            3456778888875 6788899888999999887654443321                    124799999998678999


Q ss_pred             EEeCCCCeEEEEEcCCCCCccEEEEEe---CCCCCceEEEEeCCCCEEEEEecCC---------------CCCceEEEee
Q psy5768         372 WTCNNDATINKIDLDSPKAQRIVVVRL---GQHDKPRGIDIDSCDSRIYWTNWNS---------------HLPSIQRAFF  433 (652)
Q Consensus       372 wtd~~~~~I~~~~~~~~~~~~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~~~---------------~~~~I~r~~l  433 (652)
                      ++|... .|.+++.++..  .+.+...   ..+..|.+|++||..|.||++|.+.               ..++|++...
T Consensus        96 v~d~~~-~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           96 IVDCYY-HLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEETTT-EEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEECCC-CEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            999764 47777765311  2222211   1246799999999668999999762               1246888777


Q ss_pred             cCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC---ceEEEecCCCCceeEEEEeC-CEEEEEcCC-
Q psy5768         434 SGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT---NRIVLSKISPLHPFDMAVYG-EFIFWTDWV-  508 (652)
Q Consensus       434 dG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~---~~~~l~~~~~~~p~glav~~-~~lYwtd~~-  508 (652)
                      ++...+.+. ..+..|+||+++.+++.||++|...++|.+++++|.   ..+.+.. ... |.+|+++. +.||++++. 
T Consensus       173 ~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          173 STKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             TTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEE
T ss_pred             CCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCc
Confidence            654444443 456789999999998999999999999999999973   3444443 223 99999984 689999977 


Q ss_pred             ---------CCeEEEEEccCCceEEEEe
Q psy5768         509 ---------IHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       509 ---------~~~I~~~~k~~g~~~~~~~  527 (652)
                               .+.|.+++. .|+....+.
T Consensus       250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~  276 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDE-FGNILEVIP  276 (322)
T ss_dssp             TTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred             ccccccCCCccEEEEECC-CCCEEEEEE
Confidence                     467888887 465544443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.56  E-value=1e-12  Score=133.34  Aligned_cols=207  Identities=13%  Similarity=0.116  Sum_probs=155.7

Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee------ccCceeeeEEEccCCEEEEEeCC-CCeEEEEE
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE------RQGSVEGLAYEYVHNYLYWTCNN-DATINKID  384 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~------~~~~~~glAvDw~~~~LYwtd~~-~~~I~~~~  384 (652)
                      .+..+.++++|+. +.||+++...++|.+++.+|.....+..      ....|.+||++...++||+++.. .+.|.+++
T Consensus        28 ~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCC-CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            3466889999975 5799999988999999988754443321      23579999998778999999964 78898888


Q ss_pred             cCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-cCCCCCceEEEecCCCEEEE
Q psy5768         385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-TDITMPNALALDHQAEKLFW  463 (652)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-~~l~~P~glaiD~~~~~LYw  463 (652)
                      .++.   ....+.......|.+|+++| .|.||+++....  +|.+...+|.....+.. ..+..|++|++|.. ++||+
T Consensus       107 ~~g~---~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v  179 (286)
T 1q7f_A          107 QYGQ---FVRKFGATILQHPRGVTVDN-KGRIIVVECKVM--RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFI  179 (286)
T ss_dssp             TTSC---EEEEECTTTCSCEEEEEECT-TSCEEEEETTTT--EEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEE
T ss_pred             CCCc---EEEEecCccCCCceEEEEeC-CCCEEEEECCCC--EEEEEcCCCCEEEEeCCCCccCCcEEEEECCC-CCEEE
Confidence            5542   22222223457899999999 578999997643  89998888765444432 24567999999975 67999


Q ss_pred             EeCCCCeEEEEecCCCceEEEecCC-CCceeEEEEe-CCEEEEEcCCCC-eEEEEEccCCceEEEEe
Q psy5768         464 GDARLDKIERCDYDGTNRIVLSKIS-PLHPFDMAVY-GEFIFWTDWVIH-AVLRANKYTGEEVYTLR  527 (652)
Q Consensus       464 ~D~~~~~I~~~~ldG~~~~~l~~~~-~~~p~glav~-~~~lYwtd~~~~-~I~~~~k~~g~~~~~~~  527 (652)
                      ++...+.|..++.+|.....+.... +..|.+|+++ ++.||++++..+ .|.+.+. +|+....+.
T Consensus       180 ~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~  245 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  245 (286)
T ss_dssp             EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             EECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc
Confidence            9998999999999987666654322 4789999998 569999999886 9998886 565555554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.53  E-value=1.6e-12  Score=134.00  Aligned_cols=212  Identities=15%  Similarity=0.105  Sum_probs=149.6

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQ  391 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~  391 (652)
                      ..+.++++|. +++|||+|...++|++++.+|.. ..+...-..|.|||+|..++ ||+++...+  +|.+++...  +.
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~--g~  106 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD--GT  106 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT--SC
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCC--Ce
Confidence            4578999998 56799999999999999988753 33333345899999998765 999997643  477766432  22


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE----------EcCCCCCceEEEecCCCEE
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII----------TTDITMPNALALDHQAEKL  461 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~----------~~~l~~P~glaiD~~~~~L  461 (652)
                      ...+........|.++++.+ .+.+|++|...  .+|++...++...++..          ...+..|+||  ++++++|
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~--g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLS-DTQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESS-SSEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             EEEEEeCCCccccCcccccC-CCcEEEEECCC--CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            34444444567788999876 67899999753  48999887653222211          1235679998  5558899


Q ss_pred             EEEeCCCCeEEEEecCCC----ceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEE--ecccCCcc
Q psy5768         462 FWGDARLDKIERCDYDGT----NRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTL--RKNIRRPM  534 (652)
Q Consensus       462 Yw~D~~~~~I~~~~ldG~----~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~--~~~~~~p~  534 (652)
                      |++|...++|.++++++.    .++++..  ...|.+|+++ ++.||++++..++|.+++.. |+...+.  ......|.
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence            999999999999999852    2344433  3689999998 56999999999999999874 6543221  22224455


Q ss_pred             eeEE
Q psy5768         535 GIVA  538 (652)
Q Consensus       535 ~i~~  538 (652)
                      ++++
T Consensus       259 ~~a~  262 (306)
T 2p4o_A          259 AVAF  262 (306)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=1.3e-11  Score=128.54  Aligned_cols=289  Identities=11%  Similarity=0.090  Sum_probs=184.2

Q ss_pred             cEEEEeCC-----CCEEEEEEcCC-CcEEEEEe---C-CC-CCceeEEEcCCCCeEEEEecCCCCeEEEEeCC-CCCcEE
Q psy5768         101 NIYWSDPK-----ENVIEVARLTG-QYRYVLIS---G-GV-DQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTI  168 (652)
Q Consensus       101 ~lY~~d~~-----~~~I~v~~~dg-~~~~~l~~---~-~~-~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld-g~~~~~  168 (652)
                      -+|+++.+     .+.|.+.+++. +....+..   . .+ ..|++|+++  .++||++... ...|.+.+.. ++....
T Consensus         3 g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~-~~~v~viD~~t~~~~~~   79 (328)
T 3dsm_A            3 GLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN-SHVIFAIDINTFKEVGR   79 (328)
T ss_dssp             EEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG-GTEEEEEETTTCCEEEE
T ss_pred             eEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC-CCEEEEEECcccEEEEE
Confidence            46777765     67788888763 32222111   0 12 468999997  6899999875 5688888876 333333


Q ss_pred             EEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCc
Q psy5768         169 LAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCA  248 (652)
Q Consensus       169 ~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs  248 (652)
                      +  .....|.+|+++..+ +||+.+..++....+             ....                             
T Consensus        80 i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~i-------------D~~t-----------------------------  114 (328)
T 3dsm_A           80 I--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFII-------------NPKT-----------------------------  114 (328)
T ss_dssp             E--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEE-------------ETTT-----------------------------
T ss_pred             c--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEE-------------ECCC-----------------------------
Confidence            3  345789999998664 999988322222211             0000                             


Q ss_pred             ccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeE
Q psy5768         249 ELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTL  328 (652)
Q Consensus       249 ~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~l  328 (652)
                                                           ...+..+.+.....            ....+.+|++  ..++|
T Consensus       115 -------------------------------------~~~~~~i~~g~~~~------------~~~~p~~i~~--~~~~l  143 (328)
T 3dsm_A          115 -------------------------------------YEITGYIECPDMDM------------ESGSTEQMVQ--YGKYV  143 (328)
T ss_dssp             -------------------------------------TEEEEEEECTTCCT------------TTCBCCCEEE--ETTEE
T ss_pred             -------------------------------------CeEEEEEEcCCccc------------cCCCcceEEE--ECCEE
Confidence                                                 00011222210000            0011234444  36889


Q ss_pred             EEeec-ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC----------CeEEEEEcCCCCCccEEEEE
Q psy5768         329 FYSDI-QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND----------ATINKIDLDSPKAQRIVVVR  397 (652)
Q Consensus       329 ywsd~-~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~----------~~I~~~~~~~~~~~~~~~~~  397 (652)
                      |+++. ..+.|..+++........+..-..|.+|++|.. ++||++....          +.|.+++.....  ....+.
T Consensus       144 yv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~  220 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFK  220 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEE
T ss_pred             EEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEe
Confidence            99987 378899998775433333333347999999985 4688888765          789999975421  222233


Q ss_pred             eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCce--EEEEcCCCCCceEEEecCCCEEEEEe----CCCCeE
Q psy5768         398 LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTE--SIITTDITMPNALALDHQAEKLFWGD----ARLDKI  471 (652)
Q Consensus       398 ~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~--~l~~~~l~~P~glaiD~~~~~LYw~D----~~~~~I  471 (652)
                      ......|.+|+++|..++||+++.     .|.+.+++.....  .++......|.||++|+.+++||.++    ...+.|
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            333468999999999999999974     7777777543321  11222246799999999899999999    778899


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY  498 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~  498 (652)
                      ..++.+|.-.+.+.. + ..|.++++-
T Consensus       296 ~v~d~~g~~~~~i~~-G-~~P~~~~~~  320 (328)
T 3dsm_A          296 YRYSPQGKLIDEFYV-G-IIPGAFCWK  320 (328)
T ss_dssp             EEECTTCCEEEEEEE-E-ESEEEEEEE
T ss_pred             EEECCCCCEEEEEEe-c-cCcceEEEe
Confidence            999999876666543 2 678888764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=2.8e-12  Score=130.92  Aligned_cols=204  Identities=14%  Similarity=0.101  Sum_probs=151.8

Q ss_pred             ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         312 MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       312 ~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      ....+.+++||+..+.|||++...+.|++++.++. .+.+......|.+|++|..+ +||+++...+.|.+++.....  
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~--  101 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE--  101 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC--
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc--
Confidence            45668899999999899999999999999999877 55554555689999999855 589999888899999873211  


Q ss_pred             cEEEEEe---CCCCCceEEEEeCCCCEEEEEec--CC-------------CCCceEEEeecCCCceEEEEcCCCCCceEE
Q psy5768         392 RIVVVRL---GQHDKPRGIDIDSCDSRIYWTNW--NS-------------HLPSIQRAFFSGFGTESIITTDITMPNALA  453 (652)
Q Consensus       392 ~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~--~~-------------~~~~I~r~~ldG~~~~~l~~~~l~~P~gla  453 (652)
                      ...+...   .....|.+|+++| .|.||+||.  +.             ....|++...+|.  ...+...+..|+||+
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT--LSAPIRDRVKPNGLA  178 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--EEEEECCCSSEEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCC--EEEeecCCCCCccEE
Confidence            2222211   1235788999999 688999875  11             1247988887743  233345677899999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEecC--CCc---eEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         454 LDHQAEKLFWGDARLDKIERCDYD--GTN---RIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       454 iD~~~~~LYw~D~~~~~I~~~~ld--G~~---~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ++++++.| |++...+.|..++++  |.-   ++++ ......|.+|+++ ++.||.+.  .+.|.+.++. |+....+.
T Consensus       179 ~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          179 FLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             ECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred             ECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence            99998888 999999999999986  432   3444 4345689999998 56899988  6789999885 66555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=1.2e-11  Score=128.60  Aligned_cols=234  Identities=16%  Similarity=0.152  Sum_probs=161.8

Q ss_pred             ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccC------cee
Q psy5768         286 VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQG------SVE  359 (652)
Q Consensus       286 ~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~------~~~  359 (652)
                      .+.|..++.... .   .+..+.   ....+.++++++.. +||+++...+.|.++++........+..-.      .|.
T Consensus        63 ~~~v~viD~~t~-~---~~~~i~---~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~  134 (328)
T 3dsm_A           63 SHVIFAIDINTF-K---EVGRIT---GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE  134 (328)
T ss_dssp             GTEEEEEETTTC-C---EEEEEE---CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred             CCEEEEEECccc-E---EEEEcC---CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence            356777776222 1   112332   23668889987654 999999778899999987544333332223      799


Q ss_pred             eeEEEccCCEEEEEeCC-CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC--------CCceEE
Q psy5768         360 GLAYEYVHNYLYWTCNN-DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH--------LPSIQR  430 (652)
Q Consensus       360 glAvDw~~~~LYwtd~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~--------~~~I~r  430 (652)
                      +|++  .++.||.++.+ .++|.++++...    +.+........|.+|+++| .|.+|++..+..        ...|.+
T Consensus       135 ~i~~--~~~~lyv~~~~~~~~v~viD~~t~----~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~  207 (328)
T 3dsm_A          135 QMVQ--YGKYVYVNCWSYQNRILKIDTETD----KVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYR  207 (328)
T ss_dssp             CEEE--ETTEEEEEECTTCCEEEEEETTTT----EEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEE
T ss_pred             eEEE--ECCEEEEEcCCCCCEEEEEECCCC----eEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEE
Confidence            9999  48999999984 789999998642    2222333457899999999 678999987641        137888


Q ss_pred             EeecCCCceEEEEcC-CCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceE--EEecCCCCceeEEEEe--CCEEEEE
Q psy5768         431 AFFSGFGTESIITTD-ITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRI--VLSKISPLHPFDMAVY--GEFIFWT  505 (652)
Q Consensus       431 ~~ldG~~~~~l~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~--~l~~~~~~~p~glav~--~~~lYwt  505 (652)
                      .+.........+... -..|++|++++++++||+++.   .|..+|.+.....  .++......|.+|++.  +++||++
T Consensus       208 id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          208 IDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             EETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             EECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            777543322222221 247999999999999999986   7899998754421  1111113689999996  6899999


Q ss_pred             c----CCCCeEEEEEccCCceEEEEecccCCcceeEEE
Q psy5768         506 D----WVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAI  539 (652)
Q Consensus       506 d----~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~  539 (652)
                      +    +..+.|.+++.. |+....+..+ ..|.++..=
T Consensus       285 ~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~~  320 (328)
T 3dsm_A          285 DAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCWK  320 (328)
T ss_dssp             ECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEEE
T ss_pred             cccccccCCEEEEECCC-CCEEEEEEec-cCcceEEEe
Confidence            9    788999999986 8877777644 356666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=2.4e-12  Score=132.39  Aligned_cols=206  Identities=17%  Similarity=0.194  Sum_probs=149.8

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      .++..+.+..+++..+.|||+|...++|++++.+|. .+.+......|.+|++|..+ +||+++...+.|.+++.++.  
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~g~--  117 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDADGQ--  117 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC--
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCCCC--
Confidence            345667899999999999999999999999988664 34444555689999999865 59999888889999987642  


Q ss_pred             ccEEEEEe---CCCCCceEEEEeCCCCEEEEEec--CC-------------CCCceEEEeecCCCceEEEEcCCCCCceE
Q psy5768         391 QRIVVVRL---GQHDKPRGIDIDSCDSRIYWTNW--NS-------------HLPSIQRAFFSGFGTESIITTDITMPNAL  452 (652)
Q Consensus       391 ~~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~--~~-------------~~~~I~r~~ldG~~~~~l~~~~l~~P~gl  452 (652)
                       ...+...   ..+..|.+|+++| .|.||+||.  +.             ....|++...++...+.+.  .+..|+||
T Consensus       118 -~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          118 -AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             -EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             -EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence             2222211   1235789999999 688999874  11             1237888888544444443  66789999


Q ss_pred             EEecCCCEEEEEeCCC-----CeEEEEecCCC---ceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceE
Q psy5768         453 ALDHQAEKLFWGDARL-----DKIERCDYDGT---NRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEV  523 (652)
Q Consensus       453 aiD~~~~~LYw~D~~~-----~~I~~~~ldG~---~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~  523 (652)
                      +++++++.|||+|...     +.|.++++++.   +++.+.......|.+|+++ ++.||.+.  .+.|+++++ +|+..
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~-~g~~~  270 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDS-DGQLL  270 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSEEEEECT-TSCEE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCcEEEECC-CCCEE
Confidence            9999999999999874     78999998864   2344443334679999998 45777776  346888887 46544


Q ss_pred             EEEe
Q psy5768         524 YTLR  527 (652)
Q Consensus       524 ~~~~  527 (652)
                      ..+.
T Consensus       271 ~~~~  274 (305)
T 3dr2_A          271 GHIP  274 (305)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.48  E-value=3e-14  Score=115.18  Aligned_cols=59  Identities=41%  Similarity=0.930  Sum_probs=54.0

Q ss_pred             cccCCCceeeccCeecCCccCCCCCCCCCCCCCC-CCCCCCCCCCCC-CeeecCCCCcccCCC
Q psy5768         591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE-GILYCAMRDCRP-GYFKCDNNKCILSSH  651 (652)
Q Consensus       591 ~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde-~~~~C~~~~C~~-~~f~C~~~~Ci~~~~  651 (652)
                      ..|.+.+|+|.+|+||+..|+|||+.||.||||| ..  |....|.+ ++|+|.||+||+.++
T Consensus         3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~--C~~~~C~~~~~f~C~~g~CI~~~~   63 (82)
T 2fyj_A            3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS--CAYPTCFPLTQFTCNNGRCININW   63 (82)
T ss_dssp             SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSS--CCCSSSCSSSEEECTTSCEEETTC
T ss_pred             CCCCCCceEeCCCCEEeccccCCCcccCCCccccccc--cccccCCCCCceECCCCCeEcHHH
Confidence            4688899999999999999999999999999999 55  98889965 999999999999876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.47  E-value=3.7e-12  Score=134.01  Aligned_cols=203  Identities=14%  Similarity=0.118  Sum_probs=145.1

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe------eccCceeeeEEEcc---CCEEEEEeCCC----
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL------ERQGSVEGLAYEYV---HNYLYWTCNND----  377 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~------~~~~~~~glAvDw~---~~~LYwtd~~~----  377 (652)
                      ..+..+.+|++++. ++||+++.. ++|+++. +|.. +.+.      .+...|.|||+++.   ++.||+++...    
T Consensus        28 ~~l~~P~~ia~~pd-G~l~V~e~~-g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           28 GGLEVPWALAFLPD-GGMLIAERP-GRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CCCSCEEEEEECTT-SCEEEEETT-TEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCCCCceEEEEcCC-CeEEEEeCC-CeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            45678899999976 569999986 8999998 6642 2222      34678999999987   78999999754    


Q ss_pred             -CeEEEEEcCCCCCc-cEEEEE-eC----CCCCceEEEEeCCCCEEEEEecCC-----------CCCceEEEeecCC---
Q psy5768         378 -ATINKIDLDSPKAQ-RIVVVR-LG----QHDKPRGIDIDSCDSRIYWTNWNS-----------HLPSIQRAFFSGF---  436 (652)
Q Consensus       378 -~~I~~~~~~~~~~~-~~~~~~-~~----~~~~P~~Iavdp~~g~Lywtd~~~-----------~~~~I~r~~ldG~---  436 (652)
                       ++|.++++++.... .+.++. ..    ....|.+|+++| .|+||+++...           ..++|.|.+.||+   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence             78999988642111 233433 22    245789999999 67999997432           2358999999983   


Q ss_pred             ---------CceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe--------EEEEecCCC----------------ceEE
Q psy5768         437 ---------GTESIITTDITMPNALALDHQAEKLFWGDARLDK--------IERCDYDGT----------------NRIV  483 (652)
Q Consensus       437 ---------~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~--------I~~~~ldG~----------------~~~~  483 (652)
                               ....++...+..|.||++|+.+++||++|.+.+.        |..+.-.+.                .+..
T Consensus       183 ~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                     1233455678899999999988999999987665        555543220                0111


Q ss_pred             EecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccC
Q psy5768         484 LSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       484 l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      .. .....|.||+++++.+|++++..+.|.+++...
T Consensus       263 ~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~  297 (352)
T 2ism_A          263 FW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEG  297 (352)
T ss_dssp             EC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEE
T ss_pred             ec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECC
Confidence            11 112468999999999999999999999987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.46  E-value=5.5e-10  Score=115.15  Aligned_cols=312  Identities=13%  Similarity=0.129  Sum_probs=196.2

Q ss_pred             eEEEecCCCCeEEEEecC--CCeeE-EEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC--CCccEE
Q psy5768           2 FIAVSSPTQSKIVVCNLE--GEYQT-TILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD--GTKRET   76 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~--g~~~~-~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d--gs~~~~   76 (652)
                      +++|++...+.|.+++++  |+... ....       ....|.++++++.+++||+++  ...+.|..+.++  +...+.
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~--~~~~~v~~~~~~~~~~~~~~   76 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVD-------VPGQVQPMVVSPDKRYLYVGV--RPEFRVLAYRIAPDDGALTF   76 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-------CSSCCCCEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEe-------cCCCCceEEECCCCCEEEEee--cCCCeEEEEEecCCCCceee
Confidence            478887888999999886  43221 1122       234788999999999999999  656788887776  333332


Q ss_pred             E--EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc-CCCcEEEEE-eCCCCCceeEEEcCCCCeEEEEecCC
Q psy5768          77 V--VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL-TGQYRYVLI-SGGVDQPSALAVDPESGYLFWSESGK  152 (652)
Q Consensus        77 v--~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~-dg~~~~~l~-~~~~~~P~~iavd~~~g~lywtd~~~  152 (652)
                      +  +..+  ..|.    +++++..++.||++....+.|.+.++ +|.....+. -.....|..++++|...+||.++.+ 
T Consensus        77 ~~~~~~~--~~~~----~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-  149 (343)
T 1ri6_A           77 AAESALP--GSLT----HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-  149 (343)
T ss_dssp             EEEEECS--SCCS----EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-
T ss_pred             ccccccC--CCCc----EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-
Confidence            2  2222  3567    99999888889999987888999888 333222221 1234679999999987789999854 


Q ss_pred             CCeEEEEeCCCCC-cEEEE----e-ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCccee
Q psy5768         153 IPLIARAGLDGKK-QTILA----Q-EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDI  226 (652)
Q Consensus       153 ~~~I~~~~ldg~~-~~~~~----~-~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i  226 (652)
                      ...|...+++... ...+.    . ..-..|.++++++.+++||+++...+..+.+                        
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~------------------------  205 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW------------------------  205 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE------------------------
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE------------------------
Confidence            4578887776422 22111    1 1134788999999888888887543332221                        


Q ss_pred             eeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCcee
Q psy5768         227 KIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFES  306 (652)
Q Consensus       227 ~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~  306 (652)
                         .....                                   .+.       +.      .+..+.. -+...      
T Consensus       206 ---~~~~~-----------------------------------~g~-------~~------~~~~~~~-~~~~~------  227 (343)
T 1ri6_A          206 ---ELKDP-----------------------------------HGN-------IE------CVQTLDM-MPENF------  227 (343)
T ss_dssp             ---ESSCT-----------------------------------TSC-------CE------EEEEEEC-SCTTC------
T ss_pred             ---EecCC-----------------------------------CCc-------EE------EEeeccc-cCccc------
Confidence               10000                                   000       00      0000110 00000      


Q ss_pred             eeeccccceEEEEEEEcCCCeEEEeecccccEEEEecc--CCcceEEe--eccCceeeeEEEccCCEEEEEeCCCCeEEE
Q psy5768         307 IRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFN--GSNHRVLL--ERQGSVEGLAYEYVHNYLYWTCNNDATINK  382 (652)
Q Consensus       307 ~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~--g~~~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~  382 (652)
                          .....+.+++|++..+.||+++...+.|...+++  +...+.+.  .....|.++++++.++.||.+....+.|.+
T Consensus       228 ----~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          228 ----SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             ----CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             ----cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence                0113356788888888899888777888888876  32223222  333459999999999999999987888888


Q ss_pred             EEcCCCCCccEEEEEeCCCCCceEEEEeCCCCE
Q psy5768         383 IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSR  415 (652)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~  415 (652)
                      .+++...+..+.+........|.+|+++|..+.
T Consensus       304 ~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          304 YEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred             EEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence            766543322333444444578999999986554

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.46  E-value=1.1e-14  Score=116.75  Aligned_cols=58  Identities=38%  Similarity=0.904  Sum_probs=54.1

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcccCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      .|.+.+|+|.+|+||+..|+|||+.||.|||||..  |....|.+++|+|.||+|||.+|
T Consensus         2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~--C~~~~C~~~~f~C~~g~Ci~~~~   59 (80)
T 2fcw_B            2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSSTCIPQLW   59 (80)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT--HHHHHCCTTEEECTTSCEEEGGG
T ss_pred             CCCCCccCCCCCCEEeeecccCCcccCCCcccccc--cccccCCceeeECCCCCEEeccc
Confidence            58889999999999999999999999999999987  87678999999999999999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.45  E-value=3.3e-10  Score=116.88  Aligned_cols=311  Identities=11%  Similarity=0.079  Sum_probs=186.4

Q ss_pred             CCCEEEEEeccCCcceEEEEEcCCCc-cEEE-EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC---CCcE
Q psy5768          48 VKGKMFWSNVTKQVVTIEMAFMDGTK-RETV-VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT---GQYR  122 (652)
Q Consensus        48 ~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v-~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d---g~~~  122 (652)
                      .++.+|+++  ...+.|+.++++.+. .+.+ .... ...|.    ++++++.++.||++....+.|.+.+++   |+..
T Consensus         3 ~~~~l~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~   75 (343)
T 1ri6_A            3 LKQTVYIAS--PESQQIHVWNLNHEGALTLTQVVDV-PGQVQ----PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   75 (343)
T ss_dssp             CEEEEEEEE--GGGTEEEEEEECTTSCEEEEEEEEC-SSCCC----CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ceEEEEEeC--CCCCeEEEEEECCCCcEEEeeeEec-CCCCc----eEEECCCCCEEEEeecCCCeEEEEEecCCCCcee
Confidence            457899997  677899999886332 1222 1122 35677    999999888899999877899998876   3332


Q ss_pred             EE-EEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC-CCCCcEEEE-eecccCceeEEEeccCCEEEEEeCCCCcE
Q psy5768         123 YV-LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL-DGKKQTILA-QEIIMPIKDITLDLKFFSAFYRNLSKGNI  199 (652)
Q Consensus       123 ~~-l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l-dg~~~~~~~-~~~~~~p~gl~lD~~~~~ly~~d~~g~~~  199 (652)
                      .+ .+.. ...|..++++|...+||++... ...|...++ +|.....+. ......|.++++++.+++||+.+...+..
T Consensus        76 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  153 (343)
T 1ri6_A           76 FAAESAL-PGSLTHISTDHQGQFVFVGSYN-AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  153 (343)
T ss_dssp             EEEEEEC-SSCCSEEEECTTSSEEEEEETT-TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             ecccccc-CCCCcEEEEcCCCCEEEEEecC-CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEE
Confidence            21 1222 2489999999988889999864 345666555 332222111 11234567777777766776665321221


Q ss_pred             EEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccce
Q psy5768         200 HIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDA  279 (652)
Q Consensus       200 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~  279 (652)
                      +                           +|+...                                    +++       
T Consensus       154 ~---------------------------~~d~~~------------------------------------~~~-------  163 (343)
T 1ri6_A          154 C---------------------------LFTVSD------------------------------------DGH-------  163 (343)
T ss_dssp             E---------------------------EEEECT------------------------------------TSC-------
T ss_pred             E---------------------------EEEecC------------------------------------CCc-------
Confidence            1                           111000                                    000       


Q ss_pred             EEEEeeeccee--EEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccC--CcceEE--ee
Q psy5768         280 FIMYSRVNRID--SIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG--SNHRVL--LE  353 (652)
Q Consensus       280 ~Ll~s~~~~i~--~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g--~~~~~i--~~  353 (652)
                       +     ..+.  .+.. .               .-..+.++++++..+.||+++...+.|...+++.  ...+.+  ..
T Consensus       164 -~-----~~~~~~~~~~-~---------------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~  221 (343)
T 1ri6_A          164 -L-----VAQDPAEVTT-V---------------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  221 (343)
T ss_dssp             -E-----EEEEEEEEEC-S---------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             -e-----eeeccccccc-C---------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc
Confidence             0     0000  0111 0               0023456888888888999987778888888753  111111  11


Q ss_pred             ----c---cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCC
Q psy5768         354 ----R---QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP  426 (652)
Q Consensus       354 ----~---~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~  426 (652)
                          +   ...|.++++++.++.||++....+.|.+.+++...+..+.+........|.+++++|...+||.+.....  
T Consensus       222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--  299 (343)
T 1ri6_A          222 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH--  299 (343)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC--
T ss_pred             ccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC--
Confidence                1   2356689999999999999988899999998632221233333333445999999998889999986543  


Q ss_pred             ceEEEeec--CCCceEEEEcCC-CCCceEEEecCCCEE
Q psy5768         427 SIQRAFFS--GFGTESIITTDI-TMPNALALDHQAEKL  461 (652)
Q Consensus       427 ~I~r~~ld--G~~~~~l~~~~l-~~P~glaiD~~~~~L  461 (652)
                      .|....+|  ....+.+..... ..|.+|+++...+++
T Consensus       300 ~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~~  337 (343)
T 1ri6_A          300 HISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGGS  337 (343)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC---
T ss_pred             eEEEEEEcCCCceeeEccccccCCCCeeEEEEcccCCc
Confidence            55544444  332333333222 579999999776654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.44  E-value=1.2e-10  Score=122.37  Aligned_cols=149  Identities=15%  Similarity=0.098  Sum_probs=113.1

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEe-----CCCcCCccCCCCcEEEEcc---CCcEEEEeC
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS-----QKKYPAVTACNLHIAVDWI---AQNIYWSDP  107 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~-----~~~~~~p~~~~~~lavDw~---~~~lY~~d~  107 (652)
                      .+..|++|++++ +++||+++  .. ++|++++.+|.  +.+..     .+ ...|.    |||++..   ++.||+++.
T Consensus        27 ~l~~P~~ia~~p-dG~l~V~e--~~-g~I~~~d~~G~--~~~~~~~v~~~g-~~g~~----gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           27 DLEVPWSIAPLG-GGRYLVTE--RP-GRLVLISPSGK--KLVASFDVANVG-EAGLL----GLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             SCSCEEEEEEEE-TTEEEEEE--TT-TEEEEECSSCE--EEEEECCCCCST-TCSEE----EEEECTTTTTSCEEEEEEE
T ss_pred             CCCCCeEEEEcC-CCeEEEEe--CC-CEEEEEeCCCc--eEeeccceeecC-CCcee----eEEeCCCCCcCCEEEEEEe
Confidence            578999999997 57899999  55 89999987775  44422     23 44566    9999986   789999986


Q ss_pred             C---C----CEEEEEEcCCC-----cEEEEEe----CCCCCceeEEEcCCCCeEEEEecC------------CCCeEEEE
Q psy5768         108 K---E----NVIEVARLTGQ-----YRYVLIS----GGVDQPSALAVDPESGYLFWSESG------------KIPLIARA  159 (652)
Q Consensus       108 ~---~----~~I~v~~~dg~-----~~~~l~~----~~~~~P~~iavd~~~g~lywtd~~------------~~~~I~~~  159 (652)
                      .   .    ++|.++++++.     ..++++.    .....|..|+++| .|+||++...            ...+|.|.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri  174 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRV  174 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence            3   3    68999998875     2444443    2345789999999 7899999632            13589999


Q ss_pred             eCCCCC-------cEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         160 GLDGKK-------QTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       160 ~ldg~~-------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      +.||+-       ...++..++..|.||++|+.+++||+.+...
T Consensus       175 ~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~  218 (354)
T 3a9g_A          175 DEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGP  218 (354)
T ss_dssp             CTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCS
T ss_pred             cCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCC
Confidence            999972       1234566788999999999899999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.43  E-value=1.2e-09  Score=113.73  Aligned_cols=283  Identities=13%  Similarity=0.104  Sum_probs=174.5

Q ss_pred             CCCCceeEEEcCCCCeEEEEec-CCCCeEEEEeCCCCCcEEEEe--ecccCceeEEEeccCCEEEEEeCCCCcEEEEEec
Q psy5768         129 GVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ--EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLS  205 (652)
Q Consensus       129 ~~~~P~~iavd~~~g~lywtd~-~~~~~I~~~~ldg~~~~~~~~--~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~  205 (652)
                      ....|..++++| +|.||.++. +....|...++++.....+..  .....|.+|++++.+++||+.+...+..+.+...
T Consensus        38 ~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            357899999999 667999986 334578888886554333322  2356899999999999999998765544332110


Q ss_pred             CCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEee
Q psy5768         206 NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSR  285 (652)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~  285 (652)
                      .....                                                                           
T Consensus       117 ~~g~~---------------------------------------------------------------------------  121 (347)
T 3hfq_A          117 ADGAL---------------------------------------------------------------------------  121 (347)
T ss_dssp             TTSCE---------------------------------------------------------------------------
T ss_pred             CCCCe---------------------------------------------------------------------------
Confidence            00000                                                                           


Q ss_pred             ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccC-CcceEEe----eccCceee
Q psy5768         286 VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG-SNHRVLL----ERQGSVEG  360 (652)
Q Consensus       286 ~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g-~~~~~i~----~~~~~~~g  360 (652)
                       ..+..+.. .+..   |.    .......+.++++++..+ +|.++...+.|...+++. .....+.    ..-..|.+
T Consensus       122 -~~~~~~~~-~~~~---p~----~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          122 -TLTDTVQH-SGHG---PR----PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             -EEEEEEEC-CCCC---SS----TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             -eecceeec-CCCC---CC----ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence             00001111 0000   00    001113456788888766 999998888888888762 2222111    22237899


Q ss_pred             eEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCC-------CCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         361 LAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQH-------DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       361 lAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~-------~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      +++++.++.||.++...+.|.+.+++...+....+......       ..|.+++++|...+||+++.+..  .|....+
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~--~v~v~~~  269 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN--TLAVFAV  269 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT--EEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC--EEEEEEE
Confidence            99999999999999988999888877432222222221111       45899999998889999987654  5666665


Q ss_pred             cCC-CceEEE--EcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC--CCceEEEec-CCCCceeEEEEeC
Q psy5768         434 SGF-GTESII--TTDITMPNALALDHQAEKLFWGDARLDKIERCDYD--GTNRIVLSK-ISPLHPFDMAVYG  499 (652)
Q Consensus       434 dG~-~~~~l~--~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld--G~~~~~l~~-~~~~~p~glav~~  499 (652)
                      +.. ..+.+.  ...-..|.+|++++++++||.++...+.|..+++|  ....+.+.. ..+..|..+...+
T Consensus       270 ~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~~  341 (347)
T 3hfq_A          270 TADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFLE  341 (347)
T ss_dssp             CGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEECC
T ss_pred             CCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccceecCCCcEEEehh
Confidence            522 222222  22234799999999999999999887877777554  333333322 1245666555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.42  E-value=4.2e-11  Score=125.92  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=110.4

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEE-----eCCCcCCccCCCCcEEEEcc---CCcEEEEeC
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV-----SQKKYPAVTACNLHIAVDWI---AQNIYWSDP  107 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~-----~~~~~~~p~~~~~~lavDw~---~~~lY~~d~  107 (652)
                      .+..|.+|++++. ++||+++  .. ++|+++. +|.. +.+.     ..+ ...|.    |||++.-   ++.||+++.
T Consensus        29 ~l~~P~~ia~~pd-G~l~V~e--~~-g~I~~i~-~g~~-~~~~~~~v~~~g-~~~p~----gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           29 GLEVPWALAFLPD-GGMLIAE--RP-GRIRLFR-EGRL-STYAELSVYHRG-ESGLL----GLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CCSCEEEEEECTT-SCEEEEE--TT-TEEEEEE-TTEE-EEEEECCCCCST-TCSEE----EEEECTTTTTSCEEEEEEE
T ss_pred             CCCCceEEEEcCC-CeEEEEe--CC-CeEEEEE-CCCc-cEeecceEeecC-CCCce----eEEECCCCCCCCEEEEEEe
Confidence            5789999999975 6799999  55 8999998 7652 3332     223 45577    9999986   689999987


Q ss_pred             CC-----CEEEEEEcCCC---cEEEEEe------CCCCCceeEEEcCCCCeEEEEecC------------CCCeEEEEeC
Q psy5768         108 KE-----NVIEVARLTGQ---YRYVLIS------GGVDQPSALAVDPESGYLFWSESG------------KIPLIARAGL  161 (652)
Q Consensus       108 ~~-----~~I~v~~~dg~---~~~~l~~------~~~~~P~~iavd~~~g~lywtd~~------------~~~~I~~~~l  161 (652)
                      ..     ++|.++++++.   ..++++.      .....|.+|+++| .|+||+++..            ...+|.|.+.
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~  176 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTP  176 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence            54     78999998864   2344443      2345789999999 7899999742            1258999999


Q ss_pred             CCCC------------cEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         162 DGKK------------QTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       162 dg~~------------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ||+-            ...++..++..|.||++|+.+++||+.+..
T Consensus       177 dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          177 EGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             CCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            9831            223455567889999999988999998864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=1.8e-10  Score=117.83  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=161.1

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      ...-+.+..|++.++.|||+|  ...++|+++++++...+.+ ..  -..|.    ++++|. .++||++.  .+.|.+.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d--~~~~~i~~~d~~~~~~~~~-~~--~~~~~----~i~~~~-dG~l~v~~--~~~l~~~   78 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVD--IPAKKVCRWDSFTKQVQRV-TM--DAPVS----SVALRQ-SGGYVATI--GTKFCAL   78 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEE-EC--SSCEE----EEEEBT-TSSEEEEE--TTEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEE--CCCCEEEEEECCCCcEEEE-eC--CCceE----EEEECC-CCCEEEEE--CCeEEEE
Confidence            456778999999999999999  8889999999987654443 22  24577    999997 45587776  5689999


Q ss_pred             EcCCCcEEEEEeC----CCCCceeEEEcCCCCeEEEEecCC----------CCeEEEEeCCCCCcEEEEeecccCceeEE
Q psy5768         116 RLTGQYRYVLISG----GVDQPSALAVDPESGYLFWSESGK----------IPLIARAGLDGKKQTILAQEIIMPIKDIT  181 (652)
Q Consensus       116 ~~dg~~~~~l~~~----~~~~P~~iavd~~~g~lywtd~~~----------~~~I~~~~ldg~~~~~~~~~~~~~p~gl~  181 (652)
                      ++++...+.+...    ....|.++++|| .|.||+++++.          ...|.+.+.+|+...  +...+..|+||+
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~  155 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLD  155 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEE
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceE
Confidence            9876555555443    234689999999 68899988542          246888887764332  344577899999


Q ss_pred             EeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEE
Q psy5768         182 LDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCA  261 (652)
Q Consensus       182 lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~  261 (652)
                      +++.++.|||++...+.+..+                           ....                            
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~---------------------------~~d~----------------------------  180 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAF---------------------------DYDL----------------------------  180 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEE---------------------------EECT----------------------------
T ss_pred             EcCCCCEEEEecCCCCcEEEE---------------------------eccC----------------------------
Confidence            999999999998753322211                           1000                            


Q ss_pred             EeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEE
Q psy5768         262 CAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSV  341 (652)
Q Consensus       262 C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~  341 (652)
                             ++|.          ++....+  ..+ .              .....+-++++|.. +.||+++...++|.++
T Consensus       181 -------~~G~----------~~~~~~~--~~~-~--------------~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~  225 (297)
T 3g4e_A          181 -------QTGQ----------ISNRRSV--YKL-E--------------KEEQIPDGMCIDAE-GKLWVACYNGGRVIRL  225 (297)
T ss_dssp             -------TTCC----------EEEEEEE--EEC-C--------------GGGCEEEEEEEBTT-SCEEEEEETTTEEEEE
T ss_pred             -------CCCc----------ccCcEEE--EEC-C--------------CCCCCCCeeEECCC-CCEEEEEcCCCEEEEE
Confidence                   0010          0000000  011 0              00123567888876 5799999888899999


Q ss_pred             ecc-CCcceEEeeccCceeeeEEE-ccCCEEEEEeCC
Q psy5768         342 FFN-GSNHRVLLERQGSVEGLAYE-YVHNYLYWTCNN  376 (652)
Q Consensus       342 ~~~-g~~~~~i~~~~~~~~glAvD-w~~~~LYwtd~~  376 (652)
                      +.+ |.....+......|.++|+. ...+.||+|...
T Consensus       226 d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          226 DPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             cCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            987 65444544455689999998 788999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.39  E-value=5.9e-10  Score=114.91  Aligned_cols=289  Identities=10%  Similarity=0.043  Sum_probs=184.9

Q ss_pred             EEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc-EEEEee
Q psy5768          94 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ-TILAQE  172 (652)
Q Consensus        94 avDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~-~~~~~~  172 (652)
                      .++...+.+|+++...+.|.+.+++.......+......| .++++|...+||+++.+ ...|.+.+++.... ...+..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF-CQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST-TCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC-CCeEEEEECCCCceeEEeccc
Confidence            4455678999999999999999987554444444455667 99999977789999875 45788888765544 322222


Q ss_pred             cccCcee-EEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccc
Q psy5768         173 IIMPIKD-ITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELC  251 (652)
Q Consensus       173 ~~~~p~g-l~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC  251 (652)
                       -..|.. +++++.+++|| +...++...                        .|.+|+..                   
T Consensus        82 -~~~~~~~~~~s~dg~~l~-~~~~~~~~~------------------------~i~v~d~~-------------------  116 (331)
T 3u4y_A           82 -GQSSMADVDITPDDQFAV-TVTGLNHPF------------------------NMQSYSFL-------------------  116 (331)
T ss_dssp             -CSSCCCCEEECTTSSEEE-ECCCSSSSC------------------------EEEEEETT-------------------
T ss_pred             -CCCCccceEECCCCCEEE-EecCCCCcc------------------------cEEEEECC-------------------
Confidence             245666 88887777777 433321100                        01111100                   


Q ss_pred             eecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEe
Q psy5768         252 LYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYS  331 (652)
Q Consensus       252 ~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lyws  331 (652)
                                        .+               ..+..+..                  -..+.++++++..++||.+
T Consensus       117 ------------------~~---------------~~~~~~~~------------------~~~~~~~~~spdg~~l~~~  145 (331)
T 3u4y_A          117 ------------------KN---------------KFISTIPI------------------PYDAVGIAISPNGNGLILI  145 (331)
T ss_dssp             ------------------TT---------------EEEEEEEC------------------CTTEEEEEECTTSSCEEEE
T ss_pred             ------------------CC---------------CeEEEEEC------------------CCCccceEECCCCCEEEEE
Confidence                              00               00011111                  0124567788887788888


Q ss_pred             eccccc-EEEEeccCCcc-----eEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCce
Q psy5768         332 DIQKGT-INSVFFNGSNH-----RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPR  405 (652)
Q Consensus       332 d~~~~~-I~~~~~~g~~~-----~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~  405 (652)
                      +...+. |...+++....     ...+.....|.++++++.++.||.++...+.|.+.++..... ...+........|.
T Consensus       146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~  224 (331)
T 3u4y_A          146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGTNNLPG  224 (331)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEECSSCCC
T ss_pred             ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccCCCCCc
Confidence            877677 66666553221     122233457999999999999999999899999999864331 11133334558899


Q ss_pred             EEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE--cC-------CCCCceEEEecCCCEEEEEeCCCCeEEEEec
Q psy5768         406 GIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT--TD-------ITMPNALALDHQAEKLFWGDARLDKIERCDY  476 (652)
Q Consensus       406 ~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~--~~-------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l  476 (652)
                      +++++|...+||++..+..  .|...++.....+.+..  ..       ....+++++++++++||.+....+.|..+++
T Consensus       225 ~~~~spdg~~l~v~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          225 TIVVSRDGSTVYVLTESTV--DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CEEECTTSSEEEEECSSEE--EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eEEECCCCCEEEEEEcCCC--EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            9999998888999987543  67777665433321211  11       1122458999999999999998899999999


Q ss_pred             CCCceEE
Q psy5768         477 DGTNRIV  483 (652)
Q Consensus       477 dG~~~~~  483 (652)
                      ++.....
T Consensus       303 ~~~~~~~  309 (331)
T 3u4y_A          303 SGKVVGY  309 (331)
T ss_dssp             TSCEEEE
T ss_pred             cCCcccc
Confidence            8765443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.39  E-value=1.2e-10  Score=122.58  Aligned_cols=203  Identities=10%  Similarity=0.072  Sum_probs=146.2

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe------eccCceeeeEEEcc---CCEEEEEeCC---C-
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL------ERQGSVEGLAYEYV---HNYLYWTCNN---D-  377 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~------~~~~~~~glAvDw~---~~~LYwtd~~---~-  377 (652)
                      ..+..+.+|++++. ++||+++.. ++|++++.+|.  +.+.      .+...|.|||+++.   ++.||+++..   . 
T Consensus        26 ~~l~~P~~ia~~pd-G~l~V~e~~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           26 SDLEVPWSIAPLGG-GRYLVTERP-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             CSCSCEEEEEEEET-TEEEEEETT-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCCCCeEEEEcCC-CeEEEEeCC-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            45677899999984 679999987 89999976664  3332      34568999999987   8999999863   3 


Q ss_pred             ---CeEEEEEcCCCCCc---cEEEEE-e--CCCCCceEEEEeCCCCEEEEEecCC-----------CCCceEEEeecCCC
Q psy5768         378 ---ATINKIDLDSPKAQ---RIVVVR-L--GQHDKPRGIDIDSCDSRIYWTNWNS-----------HLPSIQRAFFSGFG  437 (652)
Q Consensus       378 ---~~I~~~~~~~~~~~---~~~~~~-~--~~~~~P~~Iavdp~~g~Lywtd~~~-----------~~~~I~r~~ldG~~  437 (652)
                         .+|.++++++....   .++++. .  .....|.+|+++| .|+||++....           ..++|.|.+.||+-
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence               67999988754211   233332 1  2345789999999 68999996431           13589999999972


Q ss_pred             -------ceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe---EEEEecCCCc-----------------eEEEecCCCC
Q psy5768         438 -------TESIITTDITMPNALALDHQAEKLFWGDARLDK---IERCDYDGTN-----------------RIVLSKISPL  490 (652)
Q Consensus       438 -------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~---I~~~~ldG~~-----------------~~~l~~~~~~  490 (652)
                             ...++...+..|.||++|+.+++||++|...+.   |..+.- |.+                 +.........
T Consensus       181 p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence                   234556688999999999988999999987654   444432 321                 1111111235


Q ss_pred             ceeEEEE--------eCCEEEEEcCCCCeEEEEEccC
Q psy5768         491 HPFDMAV--------YGEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       491 ~p~glav--------~~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      .|.|+++        +++.+|++++..+.|.+++...
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            6999999        5789999999999999998754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.36  E-value=2.9e-10  Score=119.48  Aligned_cols=274  Identities=12%  Similarity=0.081  Sum_probs=166.6

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEE------eCCCcCCccCCCCcEEEEcc---CCcEEEEe
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV------SQKKYPAVTACNLHIAVDWI---AQNIYWSD  106 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~------~~~~~~~p~~~~~~lavDw~---~~~lY~~d  106 (652)
                      .+..|++|++++...+||+++  . .++|+++..+|...+.+.      ..+ ...+.    |||++..   ++.||+++
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e--~-~G~i~~~~~~g~~~~~~~~~~~v~~~g-~~g~~----gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITL--R-GGELRHWQAGKGLSAPLSGVPDVWAHG-QGGLL----DVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEE--T-TTEEEEEETTTEECCCCBSCCCCCCST-TCSEE----EEEECTTHHHHCEEEEEE
T ss_pred             CCCCcEEEEEcCCCCEEEEEe--C-CceEEEEeCCCceeeEecCCcccccCC-CCCce----eEEECCCCCCCCEEEEEE
Confidence            478999999998643399999  5 489999988775322221      122 23455    9999875   78999998


Q ss_pred             CC-------CCEEEEEEcCCC-----cEEEEEeC------CCCCceeEEEcCCCCeEEEEecCC------------CCeE
Q psy5768         107 PK-------ENVIEVARLTGQ-----YRYVLISG------GVDQPSALAVDPESGYLFWSESGK------------IPLI  156 (652)
Q Consensus       107 ~~-------~~~I~v~~~dg~-----~~~~l~~~------~~~~P~~iavd~~~g~lywtd~~~------------~~~I  156 (652)
                      ..       ..+|.++++++.     ..++++..      ....|..|+++| .|+||++....            ..+|
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEE
Confidence            64       457999888643     34555543      234588999999 78999996321            3589


Q ss_pred             EEEeCCCCC------------cEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcc
Q psy5768         157 ARAGLDGKK------------QTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLK  224 (652)
Q Consensus       157 ~~~~ldg~~------------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~  224 (652)
                      .|.+.||+-            ...++..++..|.||++|+.+++||+.+........|..          +.++..   +
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~----------i~~G~n---y  233 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINI----------PQKGKN---Y  233 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEEC----------CCTTCB---C
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeE----------eccCCc---C
Confidence            999999872            233455678889999999989999998765321122211          111100   0


Q ss_pred             eeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCc
Q psy5768         225 DIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPF  304 (652)
Q Consensus       225 ~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~  304 (652)
                      +.           ..|.   ++.    .             |   ++..+....       .        .....+..|+
T Consensus       234 Gw-----------p~~~---~~~----~-------------~---~~~~~~~~~-------~--------~~~~~~~~P~  264 (353)
T 2g8s_A          234 GW-----------PLAT---WGI----N-------------Y---SGFKIPEAK-------G--------EIVAGTEQPV  264 (353)
T ss_dssp             CT-----------TTBC---SSB----C-------------T---TSSCCTTCC-------B--------SSCTTSCCCS
T ss_pred             CC-----------CCcc---CCC----C-------------C---CCCccCccc-------C--------CCCCCccCCe
Confidence            00           0000   000    0             0   000000000       0        0000111122


Q ss_pred             eeeeeccccceEEEEEEEc------CCCeEEEeecccccEEEEeccCCcc---eEEeec-cCceeeeEEEccCCEEEEE-
Q psy5768         305 ESIRNSTMMKNIIELSYDY------KRKTLFYSDIQKGTINSVFFNGSNH---RVLLER-QGSVEGLAYEYVHNYLYWT-  373 (652)
Q Consensus       305 ~~~~~~~~~~~~~~v~~D~------~~~~lywsd~~~~~I~~~~~~g~~~---~~i~~~-~~~~~glAvDw~~~~LYwt-  373 (652)
                      ..+..   ...+.+++|..      -.+.+|+++...++|.++.+++...   +.++.. ..+|.+|++++.+ .||++ 
T Consensus       265 ~~~~~---~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~t  340 (353)
T 2g8s_A          265 FYWKD---SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG-YLYVLT  340 (353)
T ss_dssp             EEESS---CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS-CEEEEE
T ss_pred             EEeCC---CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC-cEEEEE
Confidence            11111   12456677653      2478999999999999999886421   223333 3589999999865 58885 


Q ss_pred             eCCCCeEEEEE
Q psy5768         374 CNNDATINKID  384 (652)
Q Consensus       374 d~~~~~I~~~~  384 (652)
                      |...++|.++.
T Consensus       341 d~~~g~I~ri~  351 (353)
T 2g8s_A          341 DESSGELLKVS  351 (353)
T ss_dssp             CSTTEEEEEEE
T ss_pred             eCCCCEEEEEe
Confidence            66778888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=6.8e-11  Score=121.05  Aligned_cols=219  Identities=14%  Similarity=0.128  Sum_probs=151.5

Q ss_pred             cccceEEEEEEEcCCCeEEEe-------ecccccEEEEeccCCcceEEee-----ccCceeeeEEEccCCEEEEEeCCCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYS-------DIQKGTINSVFFNGSNHRVLLE-----RQGSVEGLAYEYVHNYLYWTCNNDA  378 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lyws-------d~~~~~I~~~~~~g~~~~~i~~-----~~~~~~glAvDw~~~~LYwtd~~~~  378 (652)
                      ..+..+.++++| .+++||++       +...+.|+++++.+...+.+..     ....|.+|++|..+++||+++... 
T Consensus        15 ~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-   92 (314)
T 1pjx_A           15 EDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-   92 (314)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-
T ss_pred             ccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-
Confidence            445667899999 66789999       8778899999865443333332     235799999998768899998743 


Q ss_pred             eEEEEEcCCCCCccEEE-EEe---CCCCCceEEEEeCCCCEEEEEecCCC-------------CCceEEEeecCCCceEE
Q psy5768         379 TINKIDLDSPKAQRIVV-VRL---GQHDKPRGIDIDSCDSRIYWTNWNSH-------------LPSIQRAFFSGFGTESI  441 (652)
Q Consensus       379 ~I~~~~~~~~~~~~~~~-~~~---~~~~~P~~Iavdp~~g~Lywtd~~~~-------------~~~I~r~~ldG~~~~~l  441 (652)
                      .|.+++.++.   ...+ ...   .....|.+|++|| .|.||+++.+..             ...|++...+|.. +.+
T Consensus        93 ~l~~~d~~g~---~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~  167 (314)
T 1pjx_A           93 GLLVVQTDGT---FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQV  167 (314)
T ss_dssp             EEEEEETTSC---EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEE
T ss_pred             CEEEEeCCCC---EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEe
Confidence            7888887631   2222 111   1124689999999 688999986531             1378888877542 222


Q ss_pred             EEcCCCCCceEEEe----cCCCEEEEEeCCCCeEEEEecCCCc----eEEEecC--CC-CceeEEEEe-CCEEEEEcCCC
Q psy5768         442 ITTDITMPNALALD----HQAEKLFWGDARLDKIERCDYDGTN----RIVLSKI--SP-LHPFDMAVY-GEFIFWTDWVI  509 (652)
Q Consensus       442 ~~~~l~~P~glaiD----~~~~~LYw~D~~~~~I~~~~ldG~~----~~~l~~~--~~-~~p~glav~-~~~lYwtd~~~  509 (652)
                      . ..+..|++++++    ..+++||+++...+.|..+++++..    ++.+...  .. ..|.+|+++ ++.||++++..
T Consensus       168 ~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          168 D-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             E-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             c-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            2 345679999999    8878999999988999999976322    1222221  12 579999998 47999999888


Q ss_pred             CeEEEEEccCCceEEEEecccCCcceeE
Q psy5768         510 HAVLRANKYTGEEVYTLRKNIRRPMGIV  537 (652)
Q Consensus       510 ~~I~~~~k~~g~~~~~~~~~~~~p~~i~  537 (652)
                      +.|.+++..+|+....+......|.++.
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~  274 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence            9999999876765554443323444444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.35  E-value=6.2e-09  Score=107.18  Aligned_cols=179  Identities=10%  Similarity=-0.036  Sum_probs=123.1

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCcc-EEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR-ETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~-~~v~~~   80 (652)
                      +++|++...+.|.++|++..........      ....+ ++++++.+++||+++  ...+.|+.+++..... ...+..
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~-~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEILNQITL------GYDFV-DTAITSDCSNVVVTS--DFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEEC------CCCEE-EEEECSSSCEEEEEE--STTCEEEEEECSSSSCEEEEEEE
T ss_pred             EEEEEecCCCeEEEEeCcccceeeeEEc------cCCcc-eEEEcCCCCEEEEEe--CCCCeEEEEECCCCceeEEeccc
Confidence            5788998999999999884444333321      23566 999999999999999  7778999999876543 333444


Q ss_pred             CCcCCccCCCCc-EEEEccCCcEEEEeCCC-C--EEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5768          81 KKYPAVTACNLH-IAVDWIAQNIYWSDPKE-N--VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        81 ~~~~~p~~~~~~-lavDw~~~~lY~~d~~~-~--~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I  156 (652)
                      +  ..|.    . ++++..++.|| +.... +  .|.+.+++.......+.. -..|.+++++|...+||.++.+....|
T Consensus        82 ~--~~~~----~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           82 G--QSSM----ADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             C--SSCC----CCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             C--CCCc----cceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceE
Confidence            3  3455    7 99999888898 44434 4  899999976544444443 367999999997778999987643326


Q ss_pred             EEEeCCCCCcEEEE----eecccCceeEEEeccCCEEEEEeCCCC
Q psy5768         157 ARAGLDGKKQTILA----QEIIMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       157 ~~~~ldg~~~~~~~----~~~~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      ...+++......-.    ...-..|.++++++.+++||+.+...+
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  198 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN  198 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence            66666543322111    111346888888888777887765433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.35  E-value=3e-10  Score=115.71  Aligned_cols=241  Identities=12%  Similarity=0.097  Sum_probs=161.8

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      .+..+.++++|+.++.|||++  ...++|+++++++. .+.+ ... ...|.    +|++|. .++||+++...+.|.+.
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~--~~~~~i~~~~~~~~-~~~~-~~~-~~~~~----~l~~~~-dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSD--VRQNRTWAWSDDGQ-LSPE-MHP-SHHQN----GHCLNK-QGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEE--GGGTEEEEEETTSC-EEEE-ESS-CSSEE----EEEECT-TCCEEEEETTTTEEEEE
T ss_pred             CCccccCCeEeCCCCEEEEEe--CCCCEEEEEECCCC-eEEE-ECC-CCCcc----eeeECC-CCcEEEEecCCCeEEEE
Confidence            457889999999988899999  77889999999987 4444 334 45678    999997 67799999888899999


Q ss_pred             Ec-CCCcEEEEEe-C--CCCCceeEEEcCCCCeEEEEec--CC--------------CCeEEEEeCCCCCcEEEEeeccc
Q psy5768         116 RL-TGQYRYVLIS-G--GVDQPSALAVDPESGYLFWSES--GK--------------IPLIARAGLDGKKQTILAQEIIM  175 (652)
Q Consensus       116 ~~-dg~~~~~l~~-~--~~~~P~~iavd~~~g~lywtd~--~~--------------~~~I~~~~ldg~~~~~~~~~~~~  175 (652)
                      ++ +|+....... .  ....|.++++|| +|.||+||.  +.              ...|.+.+.+|+.  ..+...+.
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~~~~~~  172 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL--SAPIRDRV  172 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE--EEEECCCS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE--EEeecCCC
Confidence            98 6765433221 1  245789999998 789999875  21              3478888877542  23344577


Q ss_pred             CceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecC
Q psy5768         176 PIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNG  255 (652)
Q Consensus       176 ~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~  255 (652)
                      .|+||++++.++.| |++...+....+                           ...                       
T Consensus       173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~---------------------------~~~-----------------------  201 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VSDTGDNATHRY---------------------------CLN-----------------------  201 (296)
T ss_dssp             SEEEEEECTTSCEE-EEETTTTEEEEE---------------------------EEC-----------------------
T ss_pred             CCccEEECCCCCEE-EEeCCCCeEEEE---------------------------EEC-----------------------
Confidence            89999999887777 877653322211                           100                       


Q ss_pred             CCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeeccc
Q psy5768         256 VSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQK  335 (652)
Q Consensus       256 ~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~  335 (652)
                                   .+|.        + -.. ..+  +..  . .              ..+.++++|.. ++||+++  .
T Consensus       202 -------------~~g~--------~-~~~-~~~--~~~--~-~--------------~~p~~i~~d~~-G~l~v~~--~  236 (296)
T 3e5z_A          202 -------------ARGE--------T-EYQ-GVH--FTV--E-P--------------GKTDGLRVDAG-GLIWASA--G  236 (296)
T ss_dssp             -------------SSSC--------E-EEE-EEE--ECC--S-S--------------SCCCSEEEBTT-SCEEEEE--T
T ss_pred             -------------CCCc--------C-cCC-CeE--eeC--C-C--------------CCCCeEEECCC-CCEEEEc--C
Confidence                         0000        0 000 000  000  0 0              11234667765 5688888  6


Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEE-ccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYE-YVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvD-w~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      +.|.+++.+|.....+..... |.+++++ ..++.||.+..  +.+.++++...
T Consensus       237 ~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~  287 (296)
T 3e5z_A          237 DGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVR  287 (296)
T ss_dssp             TEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCC
T ss_pred             CeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEcccc
Confidence            789999988765444443444 8999995 66788999875  57888887543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.34  E-value=2.6e-08  Score=106.67  Aligned_cols=332  Identities=11%  Similarity=0.013  Sum_probs=203.4

Q ss_pred             CCeeEEE---EECCCCEEEEEeccCC-------cc------eEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCc
Q psy5768          38 SKISSIA---VWPVKGKMFWSNVTKQ-------VV------TIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQN  101 (652)
Q Consensus        38 ~~~~~v~---~d~~~~~lyw~d~~~~-------~~------~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~  101 (652)
                      ..+..++   +++..+.+|+......       .+      .|++++..+...+.+.....-..|.    ++++++ .+.
T Consensus        61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~s~-~~~  135 (433)
T 3bws_A           61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPK----SVRFID-NTR  135 (433)
T ss_dssp             EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBC----CCEESS-SSE
T ss_pred             CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCce----EEEEeC-CCe
Confidence            3456677   7888888887651111       01      5555555443222221111023355    999998 889


Q ss_pred             EEEEeCCCCEEEEEEcCCCcEEEEEe-----CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccC
Q psy5768         102 IYWSDPKENVIEVARLTGQYRYVLIS-----GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP  176 (652)
Q Consensus       102 lY~~d~~~~~I~v~~~dg~~~~~l~~-----~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~  176 (652)
                      +|++....+.|.+.+++.........     .....+..+++.+ +|.+|.+... ...|...+++.......+......
T Consensus       136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~-d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQ-ANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGG-GTEEEEEETTTCCEEEEEECSSSS
T ss_pred             EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECC-CCEEEEEECCCceEEEEEcCCCCC
Confidence            99998878889999987544333221     1223566788876 7888888753 467888877654443333333456


Q ss_pred             ceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCC
Q psy5768         177 IKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGV  256 (652)
Q Consensus       177 p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~  256 (652)
                      |.++++++.+++||......+..+..-....   ..                                            
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~--------------------------------------------  246 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTK---LE--------------------------------------------  246 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTT---EE--------------------------------------------
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cE--------------------------------------------
Confidence            7888888888888777654333222100000   00                                            


Q ss_pred             CceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeec---
Q psy5768         257 SAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDI---  333 (652)
Q Consensus       257 ~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~---  333 (652)
                                                      +..               +.   ....+.++++++..+.||.+..   
T Consensus       247 --------------------------------~~~---------------~~---~~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          247 --------------------------------IRK---------------TD---KIGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             --------------------------------EEE---------------CC---CCSEEEEEEECTTSSEEEEEEEESC
T ss_pred             --------------------------------EEE---------------ec---CCCCceEEEEcCCCCEEEEEECCCC
Confidence                                            000               00   0011334445554445555443   


Q ss_pred             ----ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEE
Q psy5768         334 ----QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDI  409 (652)
Q Consensus       334 ----~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iav  409 (652)
                          ..+.|+..++..............+.++++++.++.||++....++|.+.++...    +.+........|.++++
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----~~~~~~~~~~~~~~~~~  352 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----KVQKSIPVFDKPNTIAL  352 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----EEEEEEECSSSEEEEEE
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----cEEEEecCCCCCCeEEE
Confidence                2345556665443222222223378899999999999999999999999998642    33333345678999999


Q ss_pred             eCCCCEEEEEecCCCC------------CceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         410 DSCDSRIYWTNWNSHL------------PSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       410 dp~~g~Lywtd~~~~~------------~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                      +|...+||.+..+...            +.|...++........+.. ...|.++++++.++.||.+....+.|...+++
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9988899999875432            3777777754433333332 35789999999999999998777888888776


Q ss_pred             C
Q psy5768         478 G  478 (652)
Q Consensus       478 G  478 (652)
                      +
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.34  E-value=9.9e-10  Score=113.97  Aligned_cols=210  Identities=15%  Similarity=0.177  Sum_probs=154.7

Q ss_pred             ceEEEEEEEcCCCeEEEeecc------cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQ------KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~------~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ..+.++++++..++||+++..      .+.|+.+++.+......+.....|.++++++.++.||+++...+.|.++++..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            346789999999999999865      56899998875544444444457999999999999999999889999999864


Q ss_pred             CCCccEEEEEeCCCC--------CceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCC
Q psy5768         388 PKAQRIVVVRLGQHD--------KPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAE  459 (652)
Q Consensus       388 ~~~~~~~~~~~~~~~--------~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~  459 (652)
                      ..  ....+......        .|.+++++|..++||+++++.. ..|...++........+...-..|.+++++++++
T Consensus       121 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          121 GE--VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             CC--EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             Ce--eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-ceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            32  22333332222        3899999999999999997643 3788887765443333331234599999999999


Q ss_pred             EEEEEeCCCCeEEEEecCCCceEEEecC----CCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         460 KLFWGDARLDKIERCDYDGTNRIVLSKI----SPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       460 ~LYw~D~~~~~I~~~~ldG~~~~~l~~~----~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      +||.++. .+.|..+++...........    ....|.++++.  +++||+++...+.|+..+..+++....+.
T Consensus       198 ~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          198 RLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            9999986 57888998876544333332    12357788887  56899999998999999998887666555

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.33  E-value=1.3e-09  Score=108.33  Aligned_cols=203  Identities=14%  Similarity=0.123  Sum_probs=145.4

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc-
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ-  391 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~-  391 (652)
                      .++.|++||+..++||.+.-..++|++++++|.....+. .+...++|||++. .+.+|.++...+++.++.++..... 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeee
Confidence            578999999999999987666899999999976555554 5667999999984 4567788888899999888653210 


Q ss_pred             cEEEEEeCCCCCc-----eEEEEeCCCCEEEEEecCCCCCceEEEe--ecCCCceEEEE------cCCCCCceEEEecCC
Q psy5768         392 RIVVVRLGQHDKP-----RGIDIDSCDSRIYWTNWNSHLPSIQRAF--FSGFGTESIIT------TDITMPNALALDHQA  458 (652)
Q Consensus       392 ~~~~~~~~~~~~P-----~~Iavdp~~g~Lywtd~~~~~~~I~r~~--ldG~~~~~l~~------~~l~~P~glaiD~~~  458 (652)
                      ....+...-...|     .|||+||..+.||.+..... ..|++..  +.+...+++-.      ..+..+.||++|+.+
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence            1112221111334     89999999889999875432 2677765  11222233211      135678999999999


Q ss_pred             CEEEEEeCCCCeEEEEecCCCceEEEecC-C-------CCceeEEEEe-CCEEEEEcCCCCeEEEEEccC
Q psy5768         459 EKLFWGDARLDKIERCDYDGTNRIVLSKI-S-------PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       459 ~~LYw~D~~~~~I~~~~ldG~~~~~l~~~-~-------~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      ++||........+..+|.+|.-+..+.-. +       ..+|-|||++ ++.||++. ..+.+|++.|..
T Consensus       185 g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~~~~  253 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFTPQS  253 (255)
T ss_dssp             TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEEC--
T ss_pred             CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEEecC
Confidence            99999999999999999999855544222 1       4689999998 56899995 446889888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.32  E-value=7.1e-10  Score=113.39  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=111.5

Q ss_pred             EEEEEEcCCCeEEEeeccc---------------ccEEEEeccCCcceEEeeccCceeeeEEE----ccCCEEEEEeCCC
Q psy5768         317 IELSYDYKRKTLFYSDIQK---------------GTINSVFFNGSNHRVLLERQGSVEGLAYE----YVHNYLYWTCNND  377 (652)
Q Consensus       317 ~~v~~D~~~~~lywsd~~~---------------~~I~~~~~~g~~~~~i~~~~~~~~glAvD----w~~~~LYwtd~~~  377 (652)
                      .++++|.. ++||+++...               +.|++++.+|. .+.+......|.+++++    ..++.||+++...
T Consensus       120 ~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          120 NDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             CEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             cCEEECCC-CCEEEEecCcccccccccccccCCCCeEEEECCCCC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence            34556653 5677777543               57888877643 33444566789999999    8888999999988


Q ss_pred             CeEEEEEcCCCCCc---cEEEEEeCCC--CCceEEEEeCCCCEEEEEecCCCCCceEEEeec-CCCceEEEEcCCCCCce
Q psy5768         378 ATINKIDLDSPKAQ---RIVVVRLGQH--DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS-GFGTESIITTDITMPNA  451 (652)
Q Consensus       378 ~~I~~~~~~~~~~~---~~~~~~~~~~--~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld-G~~~~~l~~~~l~~P~g  451 (652)
                      ++|.+++++.. +.   ..........  ..|.+|++|+ .|.||+++++..  .|.+.+.+ |.....+ ......|.+
T Consensus       198 ~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~--~i~~~d~~~g~~~~~~-~~~~~~~~~  272 (314)
T 1pjx_A          198 KKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSS--HIEVFGPDGGQPKMRI-RCPFEKPSN  272 (314)
T ss_dssp             TEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTT--EEEEECTTCBSCSEEE-ECSSSCEEE
T ss_pred             CeEEEEECCCC-CccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCC--EEEEEcCCCCcEeEEE-eCCCCCcee
Confidence            99999987521 11   1122222222  5799999999 689999987643  89998888 6544443 334468999


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEecCC
Q psy5768         452 LALDHQAEKLFWGDARLDKIERCDYDG  478 (652)
Q Consensus       452 laiD~~~~~LYw~D~~~~~I~~~~ldG  478 (652)
                      ++++..+++||+++...+.|.+++++.
T Consensus       273 i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          273 LHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999988888999998888999998874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.32  E-value=1.1e-08  Score=106.46  Aligned_cols=289  Identities=12%  Similarity=0.084  Sum_probs=175.8

Q ss_pred             eEEEecCCC---CeEEEE--ecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEE
Q psy5768           2 FIAVSSPTQ---SKIVVC--NLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET   76 (652)
Q Consensus         2 ~i~v~~~~~---~~I~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~   76 (652)
                      +++|+++..   ..|+++  |.+......+....     ....|.+|+++|. ++||+++.....+.|+.+++++...+.
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~-----~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~   77 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLA-----ATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHK   77 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEE-----ECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeee-----ccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEE
Confidence            578887653   455555  44323332322111     3468899999985 459998811126789999887654333


Q ss_pred             EEe--CCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC--CCcEEEE-EeC-C--------CCCceeEEEcCCC
Q psy5768          77 VVS--QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVL-ISG-G--------VDQPSALAVDPES  142 (652)
Q Consensus        77 v~~--~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d--g~~~~~l-~~~-~--------~~~P~~iavd~~~  142 (652)
                      +..  .. ...|.    +||++..++.||+++...+.|.+.+++  |....+. +.. +        ...|..++++|. 
T Consensus        78 ~~~~~~~-~~~p~----~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-  151 (347)
T 3hfq_A           78 LNTVVAP-GTPPA----YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-  151 (347)
T ss_dssp             EEEEEEE-SCCCS----EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT-
T ss_pred             eeeeecC-CCCCE----EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC-
Confidence            322  12 34577    999999888899999878888888875  3432211 111 1        135788999995 


Q ss_pred             CeEEEEecCCCCeEEEEeCCCCCcEEEEe----ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecC
Q psy5768         143 GYLFWSESGKIPLIARAGLDGKKQTILAQ----EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPY  218 (652)
Q Consensus       143 g~lywtd~~~~~~I~~~~ldg~~~~~~~~----~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~  218 (652)
                      |.||.++.+ ...|...+++.........    ..-..|.++++++.+++||+++..++..+.+..           ...
T Consensus       152 g~l~v~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~-----------~~~  219 (347)
T 3hfq_A          152 NRLAVIDLG-SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKY-----------DTQ  219 (347)
T ss_dssp             SCEEEEETT-TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE-----------ETT
T ss_pred             CcEEEEeCC-CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEe-----------cCC
Confidence            559999876 4577777776222222111    112368899999988889988766443322211           000


Q ss_pred             CCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCC
Q psy5768         219 GDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS  298 (652)
Q Consensus       219 ~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~  298 (652)
                                                                         .+       .+      ..+..+.. .+.
T Consensus       220 ---------------------------------------------------~g-------~~------~~~~~~~~-~~~  234 (347)
T 3hfq_A          220 ---------------------------------------------------TG-------AF------TQLGIVKT-IPA  234 (347)
T ss_dssp             ---------------------------------------------------TT-------EE------EEEEEEES-SCT
T ss_pred             ---------------------------------------------------CC-------ce------EEeeeeee-cCC
Confidence                                                               00       00      00001110 000


Q ss_pred             CCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc-eEEe---eccCceeeeEEEccCCEEEEEe
Q psy5768         299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-RVLL---ERQGSVEGLAYEYVHNYLYWTC  374 (652)
Q Consensus       299 ~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~-~~i~---~~~~~~~glAvDw~~~~LYwtd  374 (652)
                      ..          .....+.+++|++..+.||+++...+.|...+++.... +.+.   .....|.+|++++.++.||.++
T Consensus       235 ~~----------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          235 DY----------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             TC----------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             CC----------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            00          00123567889998888999988778888887753222 2222   2234699999999999999999


Q ss_pred             CCCCeEEEEEcCCCC
Q psy5768         375 NNDATINKIDLDSPK  389 (652)
Q Consensus       375 ~~~~~I~~~~~~~~~  389 (652)
                      ...+.|.+..++...
T Consensus       305 ~~~~~v~v~~~d~~t  319 (347)
T 3hfq_A          305 QNTDNATLYARDLTS  319 (347)
T ss_dssp             TTTTEEEEEEECTTT
T ss_pred             cCCCcEEEEEEeCCC
Confidence            988888888765433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=9e-10  Score=113.92  Aligned_cols=207  Identities=15%  Similarity=0.164  Sum_probs=148.5

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCC----CeEEEEEcCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNND----ATINKIDLDSP  388 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~----~~I~~~~~~~~  388 (652)
                      ..+.++++|+ +++|||++...+.|+++++++.....+. .....|.+|++|..+ +||++....    +.|.+++.++.
T Consensus        45 ~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           45 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC
T ss_pred             ccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCC
Confidence            4467888985 5669999988899999998765544444 344679999999765 688887665    68998887654


Q ss_pred             CCccEEEEE-eCCCCCceEEEEeCCCCEEEEEecCC----CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEE
Q psy5768         389 KAQRIVVVR-LGQHDKPRGIDIDSCDSRIYWTNWNS----HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFW  463 (652)
Q Consensus       389 ~~~~~~~~~-~~~~~~P~~Iavdp~~g~Lywtd~~~----~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw  463 (652)
                      .  ...++. ......|.+|+++| .|.+|+++...    ....|++...++...+.+. .....|+++++++.+++||+
T Consensus       123 ~--~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v  198 (333)
T 2dg1_A          123 N--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWV  198 (333)
T ss_dssp             S--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEE
T ss_pred             E--EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEE
Confidence            3  222322 12346799999999 57899998642    1247888888775554443 34567999999999889999


Q ss_pred             EeCCCCeEEEEecC--CCceEE-----EecC-CCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         464 GDARLDKIERCDYD--GTNRIV-----LSKI-SPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       464 ~D~~~~~I~~~~ld--G~~~~~-----l~~~-~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ++...+.|..++++  |.....     .... ....|.+|+++ ++.||++++..+.|.+.+. +|+....+.
T Consensus       199 ~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          199 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             EeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence            99888899999994  443322     1111 12479999998 4689999988889999987 565544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=1.5e-09  Score=111.41  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=111.8

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      .+..+.+.++++.++.|||+|  ...++|++++.+|.. +++ ... ...|.    ++++|. .++||+++...+.|.+.
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d--~~~~~i~~~~~~g~~-~~~-~~~-~~~~~----gl~~d~-dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSD--LVGRRVLGWREDGTV-DVL-LDA-TAFTN----GNAVDA-QQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEE--TTTTEEEEEETTSCE-EEE-EES-CSCEE----EEEECT-TSCEEEEETTTTEEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEE--CCCCEEEEEeCCCCE-EEE-eCC-CCccc----eeeECC-CCCEEEEECCCCEEEEE
Confidence            456788999999999999999  888999999997662 333 333 45678    999997 56799999888899999


Q ss_pred             EcCCCcEEEEEeC---CCCCceeEEEcCCCCeEEEEec--CC--------------CCeEEEEeCCCCCcEEEEeecccC
Q psy5768         116 RLTGQYRYVLISG---GVDQPSALAVDPESGYLFWSES--GK--------------IPLIARAGLDGKKQTILAQEIIMP  176 (652)
Q Consensus       116 ~~dg~~~~~l~~~---~~~~P~~iavd~~~g~lywtd~--~~--------------~~~I~~~~ldg~~~~~~~~~~~~~  176 (652)
                      +++|+........   .+..|.++++|| .|.||+||.  |.              ...|.+.+.++.....+.  .+..
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          113 DADGQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             CTTSCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             CCCCCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            9998754332111   245799999998 789999974  21              246888887533344333  6778


Q ss_pred             ceeEEEeccCCEEEEEeCC
Q psy5768         177 IKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       177 p~gl~lD~~~~~ly~~d~~  195 (652)
                      |+||++++.++.||+++..
T Consensus       190 p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             EEEEEECTTSSEEEEEECC
T ss_pred             CcceEEcCCCCEEEEEecC
Confidence            9999999999999999875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.30  E-value=3.3e-08  Score=104.21  Aligned_cols=271  Identities=12%  Similarity=0.113  Sum_probs=179.4

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      +++|+....+.|.++|++...........       ..+.++++++.+.+||++.  ...+.|+.+++........+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~--~~d~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG-------SNPMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC-------CCcceEEECCCCCEEEEEC--CCCCeEEEEECCCCeEEEEEECC
Confidence            57888888999999999855444433321       3589999999999999998  67789999998654433334443


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                        ..+.    +++++..++.||++....+.|.+.++........+.. -..|..+++.|...+||++... ...|...++
T Consensus        74 --~~v~----~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~  145 (391)
T 1l0q_A           74 --SSPQ----GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG-DKTVSVINT  145 (391)
T ss_dssp             --SSEE----EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT-TTEEEEEET
T ss_pred             --CCcc----ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCC-CCEEEEEEC
Confidence              3677    9999988888999998889999999986655444443 3578999999977788888754 456777666


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCG  241 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~  241 (652)
                      ........+.. -..|.++++++.+++||+.....+.                                           
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~-------------------------------------------  181 (391)
T 1l0q_A          146 VTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMS-------------------------------------------  181 (391)
T ss_dssp             TTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTE-------------------------------------------
T ss_pred             CCCcEEEEEec-CCCcceEEECCCCCEEEEEeCCCCE-------------------------------------------
Confidence            54332222221 2345666666655555554433222                                           


Q ss_pred             CCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEE
Q psy5768         242 VNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSY  321 (652)
Q Consensus       242 ~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~  321 (652)
                                                                     |+..++..+ .   ....+..   ...+.++++
T Consensus       182 -----------------------------------------------v~~~d~~~~-~---~~~~~~~---~~~~~~~~~  207 (391)
T 1l0q_A          182 -----------------------------------------------ISVIDTVTN-S---VIDTVKV---EAAPSGIAV  207 (391)
T ss_dssp             -----------------------------------------------EEEEETTTT-E---EEEEEEC---SSEEEEEEE
T ss_pred             -----------------------------------------------EEEEECCCC-e---EEEEEec---CCCccceEE
Confidence                                                           111111000 0   0000100   123456677


Q ss_pred             EcCCCeEEEeec--ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         322 DYKRKTLFYSDI--QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       322 D~~~~~lywsd~--~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ++..+.||.+..  ..+.|+..++........+..-..|.++++++.++.||.+....++|.+.++..
T Consensus       208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            777777777765  567788777765433333444456889999999999999988889999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.29  E-value=6.2e-10  Score=114.43  Aligned_cols=210  Identities=14%  Similarity=0.105  Sum_probs=143.2

Q ss_pred             EEEee--ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccc--cEEEEeccCCcceEEe--ec
Q psy5768         281 IMYSR--VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG--TINSVFFNGSNHRVLL--ER  354 (652)
Q Consensus       281 Ll~s~--~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~--~I~~~~~~g~~~~~i~--~~  354 (652)
                      |++++  ...|.+++. ++. .   ...+..   -..+.++++|.. ++||++|...+  +|++++......+.+.  ..
T Consensus        45 lyv~d~~~~~I~~~d~-~g~-~---~~~~~~---~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~  115 (306)
T 2p4o_A           45 IFVTNHEVGEIVSITP-DGN-Q---QIHATV---EGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPD  115 (306)
T ss_dssp             EEEEETTTTEEEEECT-TCC-E---EEEEEC---SSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             EEEEeCCCCeEEEECC-CCc-e---EEEEeC---CCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC
Confidence            66654  456877775 331 1   112221   146889999876 45999996543  4888775443344444  33


Q ss_pred             cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEE---------eCCCCCceEEEEeCCCCEEEEEecCCCC
Q psy5768         355 QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVR---------LGQHDKPRGIDIDSCDSRIYWTNWNSHL  425 (652)
Q Consensus       355 ~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~---------~~~~~~P~~Iavdp~~g~Lywtd~~~~~  425 (652)
                      ...+.|+++ |.++++|++|...++|++++..+..  .+....         ...+..|.+|  +|..++||++|...+ 
T Consensus       116 ~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~--~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~-  189 (306)
T 2p4o_A          116 AIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPS--GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKM-  189 (306)
T ss_dssp             CSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTE--EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTT-
T ss_pred             ccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCc--EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCC-
Confidence            456788886 6788999999988999999975421  111111         1245678998  776789999998854 


Q ss_pred             CceEEEeecCC----CceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEE-ecCCCCceeEEEEe--
Q psy5768         426 PSIQRAFFSGF----GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVL-SKISPLHPFDMAVY--  498 (652)
Q Consensus       426 ~~I~r~~ldG~----~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l-~~~~~~~p~glav~--  498 (652)
                       +|.+..+++.    .++.+..  +..|.||++|.+ ++||+++...++|.+++.+|.-..+. +......|.++++.  
T Consensus       190 -~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~  265 (306)
T 2p4o_A          190 -LLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVE-GNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQT  265 (306)
T ss_dssp             -EEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTT-CCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCS
T ss_pred             -EEEEEEeCCCCCCCccEEEec--cCCCCCeEECCC-CCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecc
Confidence             8999999852    2333332  468999999976 58999999999999999987543321 22235789999996  


Q ss_pred             ---CCEEEEEcCCC
Q psy5768         499 ---GEFIFWTDWVI  509 (652)
Q Consensus       499 ---~~~lYwtd~~~  509 (652)
                         +++||+++...
T Consensus       266 ~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          266 EGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTTTTEEEEEECTT
T ss_pred             cCCCCEEEEECCCC
Confidence               36999998764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.28  E-value=3.9e-10  Score=118.51  Aligned_cols=207  Identities=12%  Similarity=0.083  Sum_probs=144.0

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE-------eeccCceeeeEEEcc---CCEEEEEeCC----
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL-------LERQGSVEGLAYEYV---HNYLYWTCNN----  376 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i-------~~~~~~~~glAvDw~---~~~LYwtd~~----  376 (652)
                      ..+..+.+|++++...+||+++.. ++|+++..+|...+.+       ..+...+.|||+++.   ++.||+++..    
T Consensus        15 ~~l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           15 DKLDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             EEESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCCCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            346788999999865449999974 8999998766432211       134557899999986   8999999764    


Q ss_pred             ---CCeEEEEEcCCCCCc---cEEEEEe-C----CCCCceEEEEeCCCCEEEEEecCC-----------CCCceEEEeec
Q psy5768         377 ---DATINKIDLDSPKAQ---RIVVVRL-G----QHDKPRGIDIDSCDSRIYWTNWNS-----------HLPSIQRAFFS  434 (652)
Q Consensus       377 ---~~~I~~~~~~~~~~~---~~~~~~~-~----~~~~P~~Iavdp~~g~Lywtd~~~-----------~~~~I~r~~ld  434 (652)
                         ..+|.+++++.....   .++++.. .    ....|.+|+++| .|+||++....           ..++|.|.+.|
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence               357888887643221   2333332 1    235588999999 68999997432           13589999999


Q ss_pred             CCC------------ceEEEEcCCCCCceEEEecCCCEEEEEeCCCC---eEEEEecCCCc-------------------
Q psy5768         435 GFG------------TESIITTDITMPNALALDHQAEKLFWGDARLD---KIERCDYDGTN-------------------  480 (652)
Q Consensus       435 G~~------------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~ldG~~-------------------  480 (652)
                      |+-            ...++...+..|.||++|+.+++||.+|.+.+   .|..+.- |.+                   
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCCCCCCCccCc
Confidence            971            33455668889999999998899999998754   3433321 111                   


Q ss_pred             -----------eEEEecCCCCceeEEEEe--------CCEEEEEcCCCCeEEEEEccCCc
Q psy5768         481 -----------RIVLSKISPLHPFDMAVY--------GEFIFWTDWVIHAVLRANKYTGE  521 (652)
Q Consensus       481 -----------~~~l~~~~~~~p~glav~--------~~~lYwtd~~~~~I~~~~k~~g~  521 (652)
                                 +..... ....|.|++++        .+.+|++++..+.|+++...+++
T Consensus       252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~  310 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK  310 (353)
T ss_dssp             CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred             ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe
Confidence                       000001 11368899996        47999999999999999876553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=2.6e-10  Score=119.31  Aligned_cols=217  Identities=11%  Similarity=0.016  Sum_probs=141.9

Q ss_pred             ceEEEEEEEcCCCeEEEeecc--cc--cEEEEeccCCcceEE-------eeccCceeeeEEEccCCEEEEEeCC-----C
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQ--KG--TINSVFFNGSNHRVL-------LERQGSVEGLAYEYVHNYLYWTCNN-----D  377 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~--~~--~I~~~~~~g~~~~~i-------~~~~~~~~glAvDw~~~~LYwtd~~-----~  377 (652)
                      ..+.++++++. +++|++...  .+  +|..++ +|.. ...       ...+..|.||++|.. ++|||+|..     .
T Consensus        17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSC
T ss_pred             CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCC
Confidence            36789999864 689998642  23  777777 5421 100       024568999999986 679999976     5


Q ss_pred             CeEEEEEcCCCCCccEEEEEeC-----CCCCceEEEEeCCCCEEEEEecCC-CCCceEEEeecCCCceEEEE--------
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLG-----QHDKPRGIDIDSCDSRIYWTNWNS-HLPSIQRAFFSGFGTESIIT--------  443 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~-----~~~~P~~Iavdp~~g~Lywtd~~~-~~~~I~r~~ldG~~~~~l~~--------  443 (652)
                      .+|.++++....  ....+...     ....|.+|++||..|++|++|.+. ....|.+.+++......++.        
T Consensus        93 ~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           93 PKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             CEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            789999975321  12223322     124679999999889999999721 02366666665222111110        


Q ss_pred             ------cC---------------CCCCceEEEecCCCEEEEEeCCCCeEEEEecC----CC--ce------EEEecCCCC
Q psy5768         444 ------TD---------------ITMPNALALDHQAEKLFWGDARLDKIERCDYD----GT--NR------IVLSKISPL  490 (652)
Q Consensus       444 ------~~---------------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld----G~--~~------~~l~~~~~~  490 (652)
                            ..               ...|+||+++++++.||+++....+|++++.+    +.  +.      ..+.  ...
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~~g  248 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS--EKP  248 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE--ECC
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc--cCC
Confidence                  00               02479999999999999999988899999853    21  11      1111  124


Q ss_pred             ceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEecc-cCCcceeEE
Q psy5768         491 HPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKN-IRRPMGIVA  538 (652)
Q Consensus       491 ~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~-~~~p~~i~~  538 (652)
                      .|.||+++ ++.||++++..++|.+.+..+|+...+.... +..|.++++
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            79999998 5799999999999999998556533333222 345656554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.28  E-value=2.1e-08  Score=104.90  Aligned_cols=179  Identities=9%  Similarity=0.033  Sum_probs=120.9

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCc-------c------eEEe-eccCceeeeEEEccCCEEEEEeCCCCeE
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-------H------RVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATI  380 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~-------~------~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I  380 (652)
                      .+.++++++..+.||+++...+.|....++...       .      ..+. .....|.++++++.++.||.++...++|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            367788999888999999888888877766432       1      1112 3445799999999999999999888999


Q ss_pred             EEEEcCCCCCccEEEEEe----CCCCCceEEEEeCCCCEEEEEecC-CCCCceEEEeec--CCCceEEEEc-CCCCCceE
Q psy5768         381 NKIDLDSPKAQRIVVVRL----GQHDKPRGIDIDSCDSRIYWTNWN-SHLPSIQRAFFS--GFGTESIITT-DITMPNAL  452 (652)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~----~~~~~P~~Iavdp~~g~Lywtd~~-~~~~~I~r~~ld--G~~~~~l~~~-~l~~P~gl  452 (652)
                      .+.+++..  ....+...    .....|.+|+++|...+||.++.+ ..  .|....++  ....+.+... .-..|.++
T Consensus       236 ~v~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~--~i~v~~~~~~~g~~~~~~~~~~g~~~~~~  311 (361)
T 3scy_A          236 IAFRYADG--MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD--GVAIFKVDETNGTLTKVGYQLTGIHPRNF  311 (361)
T ss_dssp             EEEEEETT--EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC--EEEEEEECTTTCCEEEEEEEECSSCCCEE
T ss_pred             EEEEecCC--ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC--EEEEEEEcCCCCcEEEeeEecCCCCCceE
Confidence            99988632  12222211    123568899999998999999877 43  55555554  2222222211 13479999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEecC--CCceEEEecC-CCCceeEEEE
Q psy5768         453 ALDHQAEKLFWGDARLDKIERCDYD--GTNRIVLSKI-SPLHPFDMAV  497 (652)
Q Consensus       453 aiD~~~~~LYw~D~~~~~I~~~~ld--G~~~~~l~~~-~~~~p~glav  497 (652)
                      ++++++++||.+....+.|....+|  ....+.+... ....|..|++
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            9999999999999887887775555  3333333211 2456776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.27  E-value=1.1e-09  Score=113.77  Aligned_cols=224  Identities=17%  Similarity=0.133  Sum_probs=154.6

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-------eccCceeeeEEEc---cCCEEEEEeC--CCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-------ERQGSVEGLAYEY---VHNYLYWTCN--NDA  378 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-------~~~~~~~glAvDw---~~~~LYwtd~--~~~  378 (652)
                      .++..+.+|++.+. ++||+++...++|+++..++...+.+.       .+...+.|||+++   .++.||++.+  ..+
T Consensus        29 ~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           29 TGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             cCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            56788999999975 679999987899999986543333221       4567899999998   4789998653  457


Q ss_pred             eEEEEEcCCCC-----C-ccEEEEE-e--CCCCCceEEEEeCCCCEEEEEecC-----------CCCCceEEEeecCC--
Q psy5768         379 TINKIDLDSPK-----A-QRIVVVR-L--GQHDKPRGIDIDSCDSRIYWTNWN-----------SHLPSIQRAFFSGF--  436 (652)
Q Consensus       379 ~I~~~~~~~~~-----~-~~~~~~~-~--~~~~~P~~Iavdp~~g~Lywtd~~-----------~~~~~I~r~~ldG~--  436 (652)
                      +|.++.+++..     . ..++++. +  ........|+++| .|+||++...           ...++|.|.+.||+  
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            89999887621     1 1344443 2  2345678899999 6899999431           22469999999998  


Q ss_pred             ------CceEEEEcCCCCCceEEEecCCCEEEEEeCCCC---eEEEEecCCCce-----------------EEEecCCCC
Q psy5768         437 ------GTESIITTDITMPNALALDHQAEKLFWGDARLD---KIERCDYDGTNR-----------------IVLSKISPL  490 (652)
Q Consensus       437 ------~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~ldG~~~-----------------~~l~~~~~~  490 (652)
                            .. .++...+..|.||++|+ .++||.+|.+.+   .|..+. .|.+-                 .........
T Consensus       187 ~~nPf~~~-~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          187 PGNPFPGS-PVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             TTCSSTTC-CEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             CCCCCCCC-eEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                  43 45667899999999998 589999998764   444443 33220                 011111113


Q ss_pred             ceeEEEEeCCEEEEEcCCCCeEEEEEccCCce---EEEEecc-cCCcceeEEE
Q psy5768         491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEE---VYTLRKN-IRRPMGIVAI  539 (652)
Q Consensus       491 ~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~---~~~~~~~-~~~p~~i~~~  539 (652)
                      .|.||+++++.+|.......+|+++....+..   .+.+..+ ..+|.+|.+-
T Consensus       264 ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~  316 (347)
T 3das_A          264 SPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPA  316 (347)
T ss_dssp             CEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEE
T ss_pred             CCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEEC
Confidence            68999999999999999999999987654321   1233323 2566666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=1.5e-09  Score=112.54  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=143.4

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccE
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI  393 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~  393 (652)
                      ..+.+..+|+.++.+||+|...+.|++++.++.....+. .-..|.+|+++.. +++|++.  ...|.+++..+..  .+
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~d-g~l~v~~--~~gl~~~d~~~g~--~~  122 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISD-SKQLIAS--DDGLFLRDTATGV--LT  122 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEET-TEEEEEE--TTEEEEEETTTCC--EE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCC-CeEEEEE--CCCEEEEECCCCc--EE
Confidence            346788999999999999999999999998875443332 2347899999975 4566665  3458888875422  22


Q ss_pred             EEEEeCC---CCCceEEEEeCCCCEEEEEecCC----CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         394 VVVRLGQ---HDKPRGIDIDSCDSRIYWTNWNS----HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       394 ~~~~~~~---~~~P~~Iavdp~~g~Lywtd~~~----~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                      .+.....   ...|.++++|| .|.+|+++.+.    ....|++.. +|.. +.+ ...+..|++|+++++++.|||++.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~-~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTTSCEEEEEET
T ss_pred             EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcE-EEe-eCCCcccCCeEEcCCCCEEEEEEC
Confidence            2222111   24688999999 57788887642    124788887 5532 222 334567999999999999999999


Q ss_pred             CCCeEEEEecC---C-C--ceEEEec--CCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         467 RLDKIERCDYD---G-T--NRIVLSK--ISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       467 ~~~~I~~~~ld---G-~--~~~~l~~--~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ..+.|..++++   | .  +++.+..  .....|.+++++ ++.||++.+..+.|.+++. +|+....+.
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            88999999986   4 2  2334432  123679999998 5689999998889999998 666555554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.25  E-value=8.4e-08  Score=106.71  Aligned_cols=352  Identities=10%  Similarity=0.092  Sum_probs=220.9

Q ss_pred             EEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEE--Ee
Q psy5768          94 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL--AQ  171 (652)
Q Consensus        94 avDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~--~~  171 (652)
                      ++|+ .+.+|++....+.|.+.+.+.......+..+. .|+.++++|...+||.++.+  ..|...+++......+  +.
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-~~~~v~~spdg~~l~v~~~d--~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRD--ARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECST-TEEEEEECTTSCEEEEEETT--SEEEEEETTSSSCEEEEEEE
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCc-ccceEEECCCCCEEEEECCC--CeEEEEECcCCCCcEEEEEe
Confidence            4676 56899999889999999987544434444333 39999999988899999875  6888888842222211  22


Q ss_pred             ecccCceeEEEec----cCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCC
Q psy5768         172 EIIMPIKDITLDL----KFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGC  247 (652)
Q Consensus       172 ~~~~~p~gl~lD~----~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~C  247 (652)
                       .-..|.++++++    .+++||..++..+....+                           +...              
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~---------------------------D~~t--------------  257 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM---------------------------DGET--------------  257 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE---------------------------ETTT--------------
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE---------------------------eccc--------------
Confidence             134789999998    889999887643333221                           1000              


Q ss_pred             cccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCe
Q psy5768         248 AELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT  327 (652)
Q Consensus       248 s~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~  327 (652)
                                                            ...+..+.+ .+.....  .....   -..+.++.+.+..+.
T Consensus       258 --------------------------------------~~~~~~i~~-~g~~~~~--~~~~~---~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          258 --------------------------------------LEPKQIVST-RGMTVDT--QTYHP---EPRVAAIIASHEHPE  293 (543)
T ss_dssp             --------------------------------------CCEEEEEEC-CEECSSS--CCEES---CCCEEEEEECSSSSE
T ss_pred             --------------------------------------cccceeecc-cCcccCc--ccccc---CCceEEEEECCCCCE
Confidence                                                  000001111 0000000  00000   013556777777788


Q ss_pred             EEEeecccccEEEEeccCCcceE--EeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCc-
Q psy5768         328 LFYSDIQKGTINSVFFNGSNHRV--LLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKP-  404 (652)
Q Consensus       328 lywsd~~~~~I~~~~~~g~~~~~--i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P-  404 (652)
                      +|++....++|..++........  .+..-..|.++++|+.++.||.+....++|.++++...    +.+..+.....| 
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~g~~ph  369 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTPH  369 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSBC
T ss_pred             EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeeccCCCCC
Confidence            88888888888888875422211  22333479999999999999999988899999987642    333222222333 


Q ss_pred             --eEEE-EeCCCCEEEEEecCCCCCceEEEeecCCC-----ceEEE--EcCCCCCceEEEecCCCEEEEEeC------CC
Q psy5768         405 --RGID-IDSCDSRIYWTNWNSHLPSIQRAFFSGFG-----TESII--TTDITMPNALALDHQAEKLFWGDA------RL  468 (652)
Q Consensus       405 --~~Ia-vdp~~g~Lywtd~~~~~~~I~r~~ldG~~-----~~~l~--~~~l~~P~glaiD~~~~~LYw~D~------~~  468 (652)
                        +++. ++|..|.+|.|..... ..|....++..+     .+++-  ...-..+..+++.+.+++||....      ..
T Consensus       370 ~g~g~~~~~p~~g~~~~s~~~~d-~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~  448 (543)
T 1nir_A          370 PGRGANFVHPKYGPVWSTSHLGD-GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS  448 (543)
T ss_dssp             CTTCEEEEETTTEEEEEEEBSSS-SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred             CCCCcccCCCCCccEEEeccCCC-ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence              3444 4787799998875222 267767776421     22222  222235677999999888887642      14


Q ss_pred             CeEEEEecCCCce--EEEe-------cCCCCceeEEEEe--CCEEEEEcCC----CCeEEEEEccCCceEEEEec-ccCC
Q psy5768         469 DKIERCDYDGTNR--IVLS-------KISPLHPFDMAVY--GEFIFWTDWV----IHAVLRANKYTGEEVYTLRK-NIRR  532 (652)
Q Consensus       469 ~~I~~~~ldG~~~--~~l~-------~~~~~~p~glav~--~~~lYwtd~~----~~~I~~~~k~~g~~~~~~~~-~~~~  532 (652)
                      +.|..+|.+....  +++.       ......+..+++.  +++||++.|.    .+.|...|..|++..+++.. .+..
T Consensus       449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~  528 (543)
T 1nir_A          449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLIT  528 (543)
T ss_dssp             TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCS
T ss_pred             ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccC
Confidence            5899999875443  3331       1223678888885  6799999883    58899999999998888874 3467


Q ss_pred             cceeEEEe
Q psy5768         533 PMGIVAIS  540 (652)
Q Consensus       533 p~~i~~~~  540 (652)
                      |.|..-+.
T Consensus       529 p~g~~~~~  536 (543)
T 1nir_A          529 PTGKFNVY  536 (543)
T ss_dssp             EEEEEEHH
T ss_pred             CCeeeecc
Confidence            87766544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.25  E-value=6.7e-08  Score=101.85  Aligned_cols=281  Identities=11%  Similarity=0.110  Sum_probs=186.2

Q ss_pred             CcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCcee
Q psy5768         100 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD  179 (652)
Q Consensus       100 ~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~g  179 (652)
                      +.+|++....+.|.+.+++.......+.. ...|..+++.|...+||++... ...|...++........+... ..+.+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-d~~i~v~d~~~~~~~~~~~~~-~~v~~   78 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAH-SNDVSIIDTATNNVIATVPAG-SSPQG   78 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGG-GTEEEEEETTTTEEEEEEECS-SSEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeec-CCCcceEEECCCCCEEEEECCC-CCeEEEEECCCCeEEEEEECC-CCccc
Confidence            46888888889999999876544444443 3569999999987789998753 457777776543332222222 36777


Q ss_pred             EEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCce
Q psy5768         180 ITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAV  259 (652)
Q Consensus       180 l~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~  259 (652)
                      +++++.+++||+...+.+..+.                           |+..                           
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v---------------------------~d~~---------------------------  104 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSV---------------------------IDTT---------------------------  104 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEE---------------------------EETT---------------------------
T ss_pred             eEECCCCCEEEEEECCCCEEEE---------------------------EECC---------------------------
Confidence            7777777777766544222211                           1100                           


Q ss_pred             EEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEE
Q psy5768         260 CACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTIN  339 (652)
Q Consensus       260 C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~  339 (652)
                                .+               ..+..+..                  -..+.++++++..+.||++....+.|+
T Consensus       105 ----------~~---------------~~~~~~~~------------------~~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A          105 ----------SN---------------TVAGTVKT------------------GKSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             ----------TT---------------EEEEEEEC------------------SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ----------CC---------------eEEEEEeC------------------CCCcceEEECCCCCEEEEEeCCCCEEE
Confidence                      00               00000010                  012456777777778888887778888


Q ss_pred             EEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEE
Q psy5768         340 SVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT  419 (652)
Q Consensus       340 ~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywt  419 (652)
                      ..++........+..-..|.++++++.++.||.+....+.|.+.++...    +.+........|.+++++|...+||.+
T Consensus       142 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----eEEEEEecCCCccceEECCCCCEEEEE
Confidence            8887654443444444578999999999999999988899999998652    222223345688999999988899998


Q ss_pred             ecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEe
Q psy5768         420 NWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLS  485 (652)
Q Consensus       420 d~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~  485 (652)
                      ........|...++........+.. -..|.++++++.+++||.+....+.|...++........+
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            8632234788777765443333332 2468899999999999999888889999999765443333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=5.1e-10  Score=117.05  Aligned_cols=192  Identities=16%  Similarity=0.199  Sum_probs=135.2

Q ss_pred             cceEEEEEEEcCCCeEEEeecc-----cccEEEEeccCCc-ceEEe-e-c----cCceeeeEEEccCCEEEEEeC---CC
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQ-----KGTINSVFFNGSN-HRVLL-E-R----QGSVEGLAYEYVHNYLYWTCN---ND  377 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~-----~~~I~~~~~~g~~-~~~i~-~-~----~~~~~glAvDw~~~~LYwtd~---~~  377 (652)
                      +..+.++++|.. ++|||+|..     ..+|.++++.... ...+. . .    ...+.+||+|..++.+|++|.   ..
T Consensus        66 ~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           66 FDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             eeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            356789999987 789999976     4789999987433 23332 1 1    135799999988899999998   77


Q ss_pred             CeEEEEEcCCCCCccEEEEEe-------------C---------------CCCCceEEEEeCCCCEEEEEecCCCCCceE
Q psy5768         378 ATINKIDLDSPKAQRIVVVRL-------------G---------------QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ  429 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~-------------~---------------~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~  429 (652)
                      +.|.++++....  ...++..             .               ....|.+||++|..+.||+++....  +|+
T Consensus       145 ~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~--~l~  220 (343)
T 2qe8_A          145 AALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST--SMY  220 (343)
T ss_dssp             CEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS--EEE
T ss_pred             CeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC--eEE
Confidence            889999875321  1111100             0               0135799999998889999998753  888


Q ss_pred             EEeec----CCC--ce-----EEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEec-CCCceEEEecC-CCCceeEEE
Q psy5768         430 RAFFS----GFG--TE-----SIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY-DGTNRIVLSKI-SPLHPFDMA  496 (652)
Q Consensus       430 r~~ld----G~~--~~-----~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l-dG~~~~~l~~~-~~~~p~gla  496 (652)
                      +...+    +..  .+     .... ....|.||++|.+ ++||+++...+.|.+++. +|. ..++... .+..|.+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va  297 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFN  297 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEE
T ss_pred             EEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeE
Confidence            88753    211  10     1111 2347999999975 799999999999999999 775 3444432 257899999


Q ss_pred             Ee-CCEEEEEcCCCCeE
Q psy5768         497 VY-GEFIFWTDWVIHAV  512 (652)
Q Consensus       497 v~-~~~lYwtd~~~~~I  512 (652)
                      +. ++.||+++...+.+
T Consensus       298 ~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             ECTTSCEEEEECCGGGS
T ss_pred             ECCCCcEEEEeCccccc
Confidence            97 57899998766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=1.4e-08  Score=104.83  Aligned_cols=149  Identities=10%  Similarity=0.029  Sum_probs=110.0

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCC----CE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE----NV  111 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~----~~  111 (652)
                      ....+.++++++ +++|||++  ...+.|+++++++.....+.... ...|.    +|++|. .++||++....    +.
T Consensus        43 ~~~~~~~~~~~~-~g~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~-~~~~~----~i~~~~-dg~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           43 KGLQLEGLNFDR-QGQLFLLD--VFEGNIFKINPETKEIKRPFVSH-KANPA----AIKIHK-DGRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             SCCCEEEEEECT-TSCEEEEE--TTTCEEEEECTTTCCEEEEEECS-SSSEE----EEEECT-TSCEEEEECTTSSSCCE
T ss_pred             cCccccCcEECC-CCCEEEEE--CCCCEEEEEeCCCCcEEEEeeCC-CCCcc----eEEECC-CCcEEEEeCCCCCCCce
Confidence            345789999996 56799999  77789999998876555544333 35677    999996 56799988655    68


Q ss_pred             EEEEEcCCCcEEEEEeC--CCCCceeEEEcCCCCeEEEEecCC-----CCeEEEEeCCCCCcEEEEeecccCceeEEEec
Q psy5768         112 IEVARLTGQYRYVLISG--GVDQPSALAVDPESGYLFWSESGK-----IPLIARAGLDGKKQTILAQEIIMPIKDITLDL  184 (652)
Q Consensus       112 I~v~~~dg~~~~~l~~~--~~~~P~~iavd~~~g~lywtd~~~-----~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~  184 (652)
                      |.+.++++.....++..  ....|.+|++|| +|.+|+++...     ...|.+.+.++.....+. ..+..|+++++++
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~  191 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALST  191 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECT
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECC
Confidence            99999988765544331  235799999998 68999998631     357888888765544443 3456799999999


Q ss_pred             cCCEEEEEeCC
Q psy5768         185 KFFSAFYRNLS  195 (652)
Q Consensus       185 ~~~~ly~~d~~  195 (652)
                      .+++||+.+..
T Consensus       192 dg~~l~v~~~~  202 (333)
T 2dg1_A          192 DEKVLWVTETT  202 (333)
T ss_dssp             TSSEEEEEEGG
T ss_pred             CCCEEEEEeCC
Confidence            88889988754

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.19  E-value=2.1e-12  Score=103.21  Aligned_cols=61  Identities=23%  Similarity=0.420  Sum_probs=53.5

Q ss_pred             cccCCCceeec-cCeecCCccCCCCCCCCCCCCCCCC-CCCC-CCCCCCCeeecCC--CCcccCCC
Q psy5768         591 TVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGI-LYCA-MRDCRPGYFKCDN--NKCILSSH  651 (652)
Q Consensus       591 ~~C~~~~f~C~-~g~Ci~~~~~Cd~~~dC~d~sde~~-~~C~-~~~C~~~~f~C~~--~~Ci~~~~  651 (652)
                      ..|.+.+|+|. +|.|||..|+|||+.||.|||||.. ..|. ..+|.+.+|+|.+  ++||+..+
T Consensus         7 ~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~   72 (80)
T 2kny_A            7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHL   72 (80)
T ss_dssp             CCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTT
T ss_pred             CCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHH
Confidence            56888999998 5899999999999999999999975 3576 4789999999998  79998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.19  E-value=7.5e-08  Score=100.61  Aligned_cols=203  Identities=12%  Similarity=0.118  Sum_probs=134.5

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcc-----eEEe-ec---------cCceeeeEEEccCCEEEEEeCCCCeE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----RVLL-ER---------QGSVEGLAYEYVHNYLYWTCNNDATI  380 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~-----~~i~-~~---------~~~~~glAvDw~~~~LYwtd~~~~~I  380 (652)
                      +..+++  ..+.||.++...+.|...+++....     ..+. .+         ...|.++++++.++.||.++...+.|
T Consensus       102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v  179 (361)
T 3scy_A          102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI  179 (361)
T ss_dssp             EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence            344555  4556777777667777776643211     1111 11         22458899999999999999988999


Q ss_pred             EEEEcCCCCC----c-c--E---EEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----C
Q psy5768         381 NKIDLDSPKA----Q-R--I---VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----D  445 (652)
Q Consensus       381 ~~~~~~~~~~----~-~--~---~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----~  445 (652)
                      .+.+++...+    . .  .   ..........|++++++|...+||+++....  .|....++....+.+...     .
T Consensus       180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~~~~~g~~~~~~~~~~~~~~  257 (361)
T 3scy_A          180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG--TVIAFRYADGMLDEIQTVAADTVN  257 (361)
T ss_dssp             EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC--EEEEEEEETTEEEEEEEEESCSSC
T ss_pred             EEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC--eEEEEEecCCceEEeEEEecCCCC
Confidence            9888875432    1 0  1   2334455678999999998889999986543  677777764332222211     1


Q ss_pred             CCCCceEEEecCCCEEEEEeCC-CCeEEEEecC--CCceEEE--ecCCCCceeEEEEe--CCEEEEEcCCCCeEEE--EE
Q psy5768         446 ITMPNALALDHQAEKLFWGDAR-LDKIERCDYD--GTNRIVL--SKISPLHPFDMAVY--GEFIFWTDWVIHAVLR--AN  516 (652)
Q Consensus       446 l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~ld--G~~~~~l--~~~~~~~p~glav~--~~~lYwtd~~~~~I~~--~~  516 (652)
                      ...|.+|++++++++||.++.. .+.|...+++  ....+.+  ... ...|.++++.  +.+||.++...+.|..  ++
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            2357799999999999999988 7888887775  2232222  222 3578999987  5689999987776544  67


Q ss_pred             ccCCceE
Q psy5768         517 KYTGEEV  523 (652)
Q Consensus       517 k~~g~~~  523 (652)
                      ..+|+..
T Consensus       337 ~~~g~~~  343 (361)
T 3scy_A          337 QATGLLT  343 (361)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcEe
Confidence            6666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.18  E-value=7.1e-08  Score=103.16  Aligned_cols=292  Identities=14%  Similarity=0.118  Sum_probs=186.3

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC----CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEE
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ----KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIE  113 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~----~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~  113 (652)
                      ..+.++++++ ++++|++.  ...+.|+.+++........+..    +....+.    +++++. .+++|++....+.|.
T Consensus       123 ~~~~~~~~s~-~~~~~~~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~----~~~~~~-~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPL--LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE----TISIPE-HNELWVSQMQANAVH  194 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEB--TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE----EEEEGG-GTEEEEEEGGGTEEE
T ss_pred             CCceEEEEeC-CCeEEEEe--CCCCeEEEEECCCCeEeeecCcccccccCCcee----EEEEcC-CCEEEEEECCCCEEE
Confidence            3567899998 89999988  6677899999885443332221    1023455    678753 678889988889999


Q ss_pred             EEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEe
Q psy5768         114 VARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRN  193 (652)
Q Consensus       114 v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d  193 (652)
                      +.+++.......+......|..++++|...+||.+... ...|...++........+.. -..|.++++++.+++||...
T Consensus       195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-SEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT-TTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEE
T ss_pred             EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-CCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEE
Confidence            99987654444444445689999999988899998753 45788877754333222221 23467777777666666554


Q ss_pred             CCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCc
Q psy5768         194 LSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKS  273 (652)
Q Consensus       194 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~  273 (652)
                      ..++...                                                                         
T Consensus       273 ~~~~~~~-------------------------------------------------------------------------  279 (433)
T 3bws_A          273 FSASNQE-------------------------------------------------------------------------  279 (433)
T ss_dssp             EESCTTC-------------------------------------------------------------------------
T ss_pred             CCCCccc-------------------------------------------------------------------------
Confidence            3211100                                                                         


Q ss_pred             ccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee
Q psy5768         274 CSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE  353 (652)
Q Consensus       274 C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~  353 (652)
                                .....|+..++..+ .   ....+..   ...+.+++|++..+.||++....+.|...++++......+.
T Consensus       280 ----------~~dg~i~~~d~~~~-~---~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~  342 (433)
T 3bws_A          280 ----------SGGGRLGIYSMDKE-K---LIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP  342 (433)
T ss_dssp             ----------SCCEEEEEEETTTT-E---EEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ----------cCCCeEEEEECCCC-c---EEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence                      00011111121000 0   0001100   02345678888888899998888899999887544444444


Q ss_pred             ccCceeeeEEEccCCEEEEEeCCC--------------CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEE
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNND--------------ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT  419 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~--------------~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywt  419 (652)
                      ....|.++++++.++.||.+....              +.|.+.++...    +.+........|.+++++|...+||.+
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----TVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT----EEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC----cEEEEecCCCCCceEEEcCCCCEEEEE
Confidence            556789999999999999998764              48998887542    233333345789999999988899988


Q ss_pred             ecCCCCCceEEEeecC
Q psy5768         420 NWNSHLPSIQRAFFSG  435 (652)
Q Consensus       420 d~~~~~~~I~r~~ldG  435 (652)
                      .....  .|....+++
T Consensus       419 ~~~d~--~i~v~~~~~  432 (433)
T 3bws_A          419 DFLDH--QIRVYRRDG  432 (433)
T ss_dssp             ETTTT--EEEEEEETT
T ss_pred             ECCCC--eEEEEEecC
Confidence            76433  666555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.13  E-value=8.9e-07  Score=98.66  Aligned_cols=355  Identities=13%  Similarity=0.086  Sum_probs=207.5

Q ss_pred             EEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC-CCCcEE-EEe
Q psy5768          94 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTI-LAQ  171 (652)
Q Consensus        94 avDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld-g~~~~~-~~~  171 (652)
                      ..|+ .+.+|++....+.|.++|.+.......+..+ ..|+++++.|...+||.++.  ...|...++. ++...+ -+.
T Consensus       162 ~~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~--dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          162 DWDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR--DGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             CCCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET--TSEEEEEETTSSSCCEEEEEE
T ss_pred             ccCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC--CCeEEEEECCCCCCcEeEEEe
Confidence            3665 6789999999999999999865443333333 47999999998889999874  4578888884 222221 122


Q ss_pred             ecccCceeEEEe----ccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCC
Q psy5768         172 EIIMPIKDITLD----LKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGC  247 (652)
Q Consensus       172 ~~~~~p~gl~lD----~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~C  247 (652)
                      . -..|.+|+++    +.+++||+.++..+....+  +..+ ..             -++...-                
T Consensus       238 ~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi--D~~t-~~-------------~~~~i~~----------------  284 (567)
T 1qks_A          238 I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM--DGET-LE-------------PKKIQST----------------  284 (567)
T ss_dssp             C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE--ETTT-CC-------------EEEEEEC----------------
T ss_pred             c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEE--ECCC-Cc-------------EEEEEec----------------
Confidence            1 2469999999    5888999988875544332  1100 00             0000000                


Q ss_pred             cccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCe
Q psy5768         248 AELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKT  327 (652)
Q Consensus       248 s~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~  327 (652)
                             +                                   .... +...+. |         ...+.++........
T Consensus       285 -------~-----------------------------------~~~~-~~~~~~-p---------~~rva~i~~s~~~~~  311 (567)
T 1qks_A          285 -------R-----------------------------------GMTY-DEQEYH-P---------EPRVAAILASHYRPE  311 (567)
T ss_dssp             -------C-----------------------------------EECT-TTCCEE-S---------CCCEEEEEECSSSSE
T ss_pred             -------c-----------------------------------cccc-cccccc-C---------CCceEEEEEcCCCCE
Confidence                   0                                   0000 000000 0         000111111111222


Q ss_pred             EEEeecccccEEEEeccCCcceEE--eeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEe-CCCCCc
Q psy5768         328 LFYSDIQKGTINSVFFNGSNHRVL--LERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL-GQHDKP  404 (652)
Q Consensus       328 lywsd~~~~~I~~~~~~g~~~~~i--~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~P  404 (652)
                      .+++....++|..++........+  +..-..+.++++|..++.+|.++...++|.++++...+  ....+.. ...-+|
T Consensus       312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Php  389 (567)
T 1qks_A          312 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHP  389 (567)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCC
T ss_pred             EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCC
Confidence            233333344444444332211111  12234688999999999999999999999999986421  2222332 222344


Q ss_pred             -eEEE-EeCCCCEEEEEecCCCCCceEEEeecCCC-----ceEEEEcCC--CCCceEEEecCCCEEEEEeCC------CC
Q psy5768         405 -RGID-IDSCDSRIYWTNWNSHLPSIQRAFFSGFG-----TESIITTDI--TMPNALALDHQAEKLFWGDAR------LD  469 (652)
Q Consensus       405 -~~Ia-vdp~~g~Lywtd~~~~~~~I~r~~ldG~~-----~~~l~~~~l--~~P~glaiD~~~~~LYw~D~~------~~  469 (652)
                       +++. ++|..|.+|.|..... ..|.....+...     .+++-....  ..+..|.+.+.+++||+....      .+
T Consensus       390 g~g~~~~~p~~g~v~~t~~~g~-~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~  468 (567)
T 1qks_A          390 GRGANFVHPTFGPVWATSHMGD-DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG  468 (567)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSS-SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred             ccceeeECCCCCcEEEeCCCCC-CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence             4665 5888788887754222 377777776522     223322222  234558888888888876532      34


Q ss_pred             eEEEEecCCC-----ce--EEEec-------CCCCceeEEEEe--CCEEEEEcCC----CCeEEEEEccCCceEEEEec-
Q psy5768         470 KIERCDYDGT-----NR--IVLSK-------ISPLHPFDMAVY--GEFIFWTDWV----IHAVLRANKYTGEEVYTLRK-  528 (652)
Q Consensus       470 ~I~~~~ldG~-----~~--~~l~~-------~~~~~p~glav~--~~~lYwtd~~----~~~I~~~~k~~g~~~~~~~~-  528 (652)
                      .|..+|++..     ..  +++..       .....|..+.+.  +++||++.|.    .+.|..+|..|++...++.. 
T Consensus       469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  548 (567)
T 1qks_A          469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  548 (567)
T ss_dssp             CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence            8898887643     32  33321       123678888886  6799999984    68899999889887777763 


Q ss_pred             ccCCcceeEEEec
Q psy5768         529 NIRRPMGIVAISD  541 (652)
Q Consensus       529 ~~~~p~~i~~~~~  541 (652)
                      .+..|.|..-+.+
T Consensus       549 ~~~~P~g~f~~~~  561 (567)
T 1qks_A          549 RLVTPTGKFNVYN  561 (567)
T ss_dssp             TCCSEEEEEEHHH
T ss_pred             cccCCCeeeeeee
Confidence            3477888765543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.12  E-value=1.3e-07  Score=98.23  Aligned_cols=249  Identities=15%  Similarity=0.172  Sum_probs=160.6

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEE------eCCCcCCccCCCCcEEEEc---cCCcEEEEe
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV------SQKKYPAVTACNLHIAVDW---IAQNIYWSD  106 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~------~~~~~~~p~~~~~~lavDw---~~~~lY~~d  106 (652)
                      .|..|++|++.+. ++||+++  ...++|+++..++...+.+.      ..+ ...+.    |||++.   .++.||++.
T Consensus        30 gL~~P~~ia~~pd-G~llVte--r~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~Gll----Gia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           30 GLNSPWGLAPLPG-GDLLVSS--RDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLL----GIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             CCSSEEEEEECTT-SCEEEEE--TTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEE----EEEECTTHHHHCEEEEEE
T ss_pred             CCCCceEEEEcCC-CcEEEEE--ecCCEEEEEECCCCcEeeecccCceeecC-CCCce----eeEeccccccCCEEEEEE
Confidence            6899999999975 7899999  76889999987644333332      123 44566    999987   378899865


Q ss_pred             C--CCCEEEEEEcCCC--------cEEEEEeC----CCCCceeEEEcCCCCeEEEEec--C----------CCCeEEEEe
Q psy5768         107 P--KENVIEVARLTGQ--------YRYVLISG----GVDQPSALAVDPESGYLFWSES--G----------KIPLIARAG  160 (652)
Q Consensus       107 ~--~~~~I~v~~~dg~--------~~~~l~~~----~~~~P~~iavd~~~g~lywtd~--~----------~~~~I~~~~  160 (652)
                      +  ..++|.++.+++.        ..++++..    ....+..|+++| .|+||++..  +          ...+|.|.+
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            3  5678999988762        23455442    345678899999 789999942  1          246899999


Q ss_pred             CCCC--------CcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeec
Q psy5768         161 LDGK--------KQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKD  232 (652)
Q Consensus       161 ldg~--------~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~  232 (652)
                      .||+        .. .++..++..|.||++|+ +++||..+........|..          +.++..        |   
T Consensus       181 ~dG~ip~~nPf~~~-~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~----------i~~G~n--------y---  237 (347)
T 3das_A          181 PDGEPAPGNPFPGS-PVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNA----------IKPGDN--------Y---  237 (347)
T ss_dssp             TTSSBCTTCSSTTC-CEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEE----------ECTTCB--------C---
T ss_pred             CCCCccCCCCCCCC-eEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeE----------EcCCCE--------e---
Confidence            9998        33 35666788999999999 6899998864222122211          111100        0   


Q ss_pred             cCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccc
Q psy5768         233 AQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTM  312 (652)
Q Consensus       233 ~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~  312 (652)
                         +--.|.                             +.     .                 +...+..|+..+..  .
T Consensus       238 ---GwP~~~-----------------------------g~-----~-----------------~~~~~~~P~~~~~~--~  261 (347)
T 3das_A          238 ---GWPEAE-----------------------------GK-----G-----------------GGSGFHDPVAQWST--D  261 (347)
T ss_dssp             ---CTTTCC-----------------------------SS-----C-----------------CCTTCCCCSEEECT--T
T ss_pred             ---cCCccc-----------------------------CC-----C-----------------CCccccCCcEecCC--C
Confidence               000000                             00     0                 00011122222211  1


Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCc----ceEEeec-cCceeeeEEEccCCEEEEEeC
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN----HRVLLER-QGSVEGLAYEYVHNYLYWTCN  375 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~----~~~i~~~-~~~~~glAvDw~~~~LYwtd~  375 (652)
                      ...+.+++|.  ++.+|.......+|.++.+++..    .+.++.+ ..+|.+|+++. .+.||+++.
T Consensus       262 ~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred             CCCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence            1246777775  58899999999999999987643    2445543 57899999998 458888764

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.11  E-value=5.7e-11  Score=83.50  Aligned_cols=41  Identities=32%  Similarity=0.695  Sum_probs=36.7

Q ss_pred             ccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       590 ~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      ++.|.+.+|+|.+|+||+..|+|||+.||.|||||....|.
T Consensus         3 ~~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c~C~   43 (45)
T 1d2l_A            3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH   43 (45)
T ss_dssp             CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred             CCcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCCcCC
Confidence            45788899999999999999999999999999999885553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.08  E-value=1.8e-07  Score=96.82  Aligned_cols=144  Identities=10%  Similarity=0.051  Sum_probs=102.8

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEE
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVAR  116 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~  116 (652)
                      ...+.+.++++.++.+||+|  ...+.|++++.++.....+ ...  ..|.    +++++. .+++|++.  ...|.+.+
T Consensus        48 ~~~~egp~~~~~~~~l~~~d--~~~~~i~~~d~~~~~~~~~-~~~--~~v~----~i~~~~-dg~l~v~~--~~gl~~~d  115 (326)
T 2ghs_A           48 MLLGEGPTFDPASGTAWWFN--ILERELHELHLASGRKTVH-ALP--FMGS----ALAKIS-DSKQLIAS--DDGLFLRD  115 (326)
T ss_dssp             CSBEEEEEEETTTTEEEEEE--GGGTEEEEEETTTTEEEEE-ECS--SCEE----EEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred             CCCCcCCeEeCCCCEEEEEE--CCCCEEEEEECCCCcEEEE-ECC--Ccce----EEEEeC-CCeEEEEE--CCCEEEEE
Confidence            34678899999999999999  7788999999987654433 222  3467    999986 56677776  34699999


Q ss_pred             cCCCcEEEEEeCC----CCCceeEEEcCCCCeEEEEecCC-----CCeEEEEeCCCCCcEEEEeecccCceeEEEeccCC
Q psy5768         117 LTGQYRYVLISGG----VDQPSALAVDPESGYLFWSESGK-----IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFF  187 (652)
Q Consensus       117 ~dg~~~~~l~~~~----~~~P~~iavd~~~g~lywtd~~~-----~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~  187 (652)
                      +++...+.+....    ...|.++++|| +|.+|+++.+.     ...|.+.+ +|+.. . +...+..|+++++++.++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~-~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-K-LFADISIPNSICFSPDGT  191 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-E-EEEEESSEEEEEECTTSC
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-E-eeCCCcccCCeEEcCCCC
Confidence            8654444444321    23688999998 67888887531     34788887 55422 2 234456899999999988


Q ss_pred             EEEEEeCCC
Q psy5768         188 SAFYRNLSK  196 (652)
Q Consensus       188 ~ly~~d~~g  196 (652)
                      +|||.+...
T Consensus       192 ~lyv~~~~~  200 (326)
T 2ghs_A          192 TGYFVDTKV  200 (326)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.04  E-value=2.7e-08  Score=101.38  Aligned_cols=204  Identities=14%  Similarity=0.084  Sum_probs=141.3

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccC-------ceeeeEE---EccCCEEEE-EeC-------
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQG-------SVEGLAY---EYVHNYLYW-TCN-------  375 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~-------~~~glAv---Dw~~~~LYw-td~-------  375 (652)
                      .+.+++||...+++|+++...++|.+++.++...+.+. .++.       .+.||.+   |.. +.|+. ++.       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccc
Confidence            35688999999999999999999999999855444333 4332       5789999   676 66666 552       


Q ss_pred             -----CCCeEEEEEcCCCCCc-cEEEEEeC------------CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC
Q psy5768         376 -----NDATINKIDLDSPKAQ-RIVVVRLG------------QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG  437 (652)
Q Consensus       376 -----~~~~I~~~~~~~~~~~-~~~~~~~~------------~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~  437 (652)
                           ....+.+.++.+...+ ....+.+.            ....|.+||+|+ .|..|+|+...- +.|+|...||+.
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~-~~I~rV~pdG~~  170 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGM-PAIARVSADGKT  170 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESS-CEEEEECTTSCC
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCC-CeEEEEeCCCCE
Confidence                 3567889998721111 22233321            223488999999 799999987631 589999999996


Q ss_pred             ceEEEEcC-----CCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEE-ec--C---CCCceeEE-EE-eCCEE-E
Q psy5768         438 TESIITTD-----ITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVL-SK--I---SPLHPFDM-AV-YGEFI-F  503 (652)
Q Consensus       438 ~~~l~~~~-----l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l-~~--~---~~~~p~gl-av-~~~~l-Y  503 (652)
                      ...+....     ...++||++++.+..|+.++. .++|.++|++-..+..+ +.  +   .+..|-+| +. +++.+ +
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            55544321     223789999999999999999 89999999984333112 21  1   35678886 54 46655 9


Q ss_pred             EEcCCCCeEEEEEccCCce
Q psy5768         504 WTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       504 wtd~~~~~I~~~~k~~g~~  522 (652)
                      +++...+.+...++..-+.
T Consensus       250 V~~~~~~~~~l~S~DgW~s  268 (334)
T 2p9w_A          250 VGARAPYAISFRSWDNWKS  268 (334)
T ss_dssp             EEEETTEEEEEECSSTTSE
T ss_pred             EEcCCCCEEEEECCCCcce
Confidence            9998777655555544333

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.04  E-value=4.2e-07  Score=95.42  Aligned_cols=167  Identities=11%  Similarity=0.067  Sum_probs=114.8

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEecc-CCcceEEe--e--c-cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFN-GSNHRVLL--E--R-QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~-g~~~~~i~--~--~-~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      .+.++++++..+.||.++...++|+..+++ ....+.+.  .  . ...|.++++++.++.||.++...++|.+.+++..
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence            467889999888999999877889988886 32222221  1  1 3579999999999999999988889988877532


Q ss_pred             CCccE---EEEE-eCCC----C-------CceEEE-EeCCCCEEEEEecCCC---CCceEEEeec--CCCceE--EEEcC
Q psy5768         389 KAQRI---VVVR-LGQH----D-------KPRGID-IDSCDSRIYWTNWNSH---LPSIQRAFFS--GFGTES--IITTD  445 (652)
Q Consensus       389 ~~~~~---~~~~-~~~~----~-------~P~~Ia-vdp~~g~Lywtd~~~~---~~~I~r~~ld--G~~~~~--l~~~~  445 (652)
                      .+...   ..+. ....    .       .|.+++ ++|...+||.++.+..   ...|....++  |.-..+  ++...
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~  305 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence            22211   1121 1111    2       489999 9998889999987643   1155555554  332211  12223


Q ss_pred             CCCCceEEEec---CCCEEEEEeCCCCeEEEEecCCCce
Q psy5768         446 ITMPNALALDH---QAEKLFWGDARLDKIERCDYDGTNR  481 (652)
Q Consensus       446 l~~P~glaiD~---~~~~LYw~D~~~~~I~~~~ldG~~~  481 (652)
                      -..|.++++++   ++++||.++...+.|...++++...
T Consensus       306 ~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence            34689999999   7999999988878888888887633

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.02  E-value=1.8e-08  Score=105.10  Aligned_cols=195  Identities=11%  Similarity=0.001  Sum_probs=127.4

Q ss_pred             EEEEEEEcCCCeEEEee------------cccccEEEEeccCC--cceEEe-ec------cCceeeeEEEcc---CCEEE
Q psy5768         316 IIELSYDYKRKTLFYSD------------IQKGTINSVFFNGS--NHRVLL-ER------QGSVEGLAYEYV---HNYLY  371 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd------------~~~~~I~~~~~~g~--~~~~i~-~~------~~~~~glAvDw~---~~~LY  371 (652)
                      +..|++++ ++.+|.+.            ...++|++++++..  ..+.+. ++      ...|.||.+...   ...||
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34455544 45666654            24567777776531  122222 33      248999999663   34799


Q ss_pred             EEeCC--CCeEEEEEcCCCCCccEEEE-E--eCCCCCceEEEEeCCCCEEEEEecC---------------CCCCceEEE
Q psy5768         372 WTCNN--DATINKIDLDSPKAQRIVVV-R--LGQHDKPRGIDIDSCDSRIYWTNWN---------------SHLPSIQRA  431 (652)
Q Consensus       372 wtd~~--~~~I~~~~~~~~~~~~~~~~-~--~~~~~~P~~Iavdp~~g~Lywtd~~---------------~~~~~I~r~  431 (652)
                      .++..  ..+|++..++.... ..+++ .  ...+..|.++++++ .|.+|+++..               ...++|+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~-~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTT-EEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCC-EEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            99876  45677766653221 22222 1  24568899999999 6888887642               123578887


Q ss_pred             eecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC----ceEEEecCCCCceeEEEEeC--CEEEEE
Q psy5768         432 FFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT----NRIVLSKISPLHPFDMAVYG--EFIFWT  505 (652)
Q Consensus       432 ~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~----~~~~l~~~~~~~p~glav~~--~~lYwt  505 (652)
                      ..  ...++ +..++..||||+++++++.||++|...++|.++++++.    +++++ .. ...|-||+++.  +.||.+
T Consensus       209 d~--~~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          209 SP--NDVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             CT--TCCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECTTTCCEEEE
T ss_pred             EC--CeEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeCCCCcEEEE
Confidence            65  23443 44678899999999999999999999999999999742    23344 32 37899999994  688885


Q ss_pred             c-CCCCeEEEEEcc
Q psy5768         506 D-WVIHAVLRANKY  518 (652)
Q Consensus       506 d-~~~~~I~~~~k~  518 (652)
                      . |....|.+.++.
T Consensus       284 ~~~~g~~v~~~~P~  297 (355)
T 3sre_A          284 CHPNGMRIFFYDAE  297 (355)
T ss_dssp             EESCHHHHHSCCTT
T ss_pred             ecCCceEEEEECCC
Confidence            4 665556555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.01  E-value=9.7e-08  Score=103.52  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=108.8

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC-CCccEEEEe--C------CCcCCccCCCCcEEEEcc---CCcEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD-GTKRETVVS--Q------KKYPAVTACNLHIAVDWI---AQNIY  103 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d-gs~~~~v~~--~------~~~~~p~~~~~~lavDw~---~~~lY  103 (652)
                      .+..|++|++++. ++||+++  ...++|+++..+ |. .+.+..  .      + ...+.    |||++..   ++.||
T Consensus        25 ~l~~P~~~a~~pd-G~l~V~e--~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g-~~Gll----gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           25 NLNKPHALLWGPD-NQIWLTE--RATGKILRVNPESGS-VKTVFQVPEIVNDADG-QNGLL----GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CCSSEEEEEECTT-SCEEEEE--TTTCEEEEECTTTCC-EEEEEECTTCCCCTTS-SCSEE----EEEECTTTTTSCEEE
T ss_pred             CCCCceEEEEcCC-CcEEEEE--cCCCEEEEEECCCCc-EeEEecCCccccccCC-CCcee----EEEECCCcCcCCEEE
Confidence            5789999999975 7899999  666689999875 44 333322  1      1 22344    9999976   88999


Q ss_pred             EEeCC------------CCEEEEEEcCCC-----cEEEEEe----CCCCCceeEEEcCCCCeEEEEecC--C--------
Q psy5768         104 WSDPK------------ENVIEVARLTGQ-----YRYVLIS----GGVDQPSALAVDPESGYLFWSESG--K--------  152 (652)
Q Consensus       104 ~~d~~------------~~~I~v~~~dg~-----~~~~l~~----~~~~~P~~iavd~~~g~lywtd~~--~--------  152 (652)
                      ++++.            ..+|.++++++.     ..++++.    .....+..|+++| .|+||++...  .        
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~  174 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFL  174 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTS
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccc
Confidence            99863            358999887542     3455554    2345699999999 7899999432  0        


Q ss_pred             ---------------------CCeEEEEeCCCCC----------cEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         153 ---------------------IPLIARAGLDGKK----------QTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       153 ---------------------~~~I~~~~ldg~~----------~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                                           .++|.|.+.||+-          ...++..++..|.||++|+ +++||..+..
T Consensus       175 ~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g  247 (454)
T 1cru_A          175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQG  247 (454)
T ss_dssp             CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEEC
T ss_pred             ccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecC
Confidence                                 3689999999982          2345666788999999999 6999998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.00  E-value=6.1e-06  Score=91.65  Aligned_cols=344  Identities=11%  Similarity=0.045  Sum_probs=201.5

Q ss_pred             EECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC---CCc
Q psy5768          45 VWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT---GQY  121 (652)
Q Consensus        45 ~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d---g~~  121 (652)
                      +++ ++++|++.  ...+.|..++.........+..+ .. |.    ++++++.++.||.++.. +.|.+.+++   ++.
T Consensus       145 ~~p-~~~~~vs~--~~d~~V~v~D~~t~~~~~~i~~g-~~-~~----~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          145 LDL-PNLFSVTL--RDAGQIALVDGDSKKIVKVIDTG-YA-VH----ISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCG-GGEEEEEE--GGGTEEEEEETTTCCEEEEEECS-TT-EE----EEEECTTSCEEEEEETT-SEEEEEETTSSSCEE
T ss_pred             cCC-CCEEEEEE--cCCCeEEEEECCCceEEEEEecC-cc-cc----eEEECCCCCEEEEECCC-CeEEEEECcCCCCcE
Confidence            676 57999999  77889999887644333334444 33 66    99999999999999976 999999993   333


Q ss_pred             EEEEEeCCCCCceeEEEcC----CCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec-----------ccCceeEEEeccC
Q psy5768         122 RYVLISGGVDQPSALAVDP----ESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-----------IMPIKDITLDLKF  186 (652)
Q Consensus       122 ~~~l~~~~~~~P~~iavd~----~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~-----------~~~p~gl~lD~~~  186 (652)
                      ...+- . -..|+.++++|    ...+||.++.. .+.|...+.........+...           -..+.++++++.+
T Consensus       215 ~~~i~-~-g~~p~~va~sp~~~~dg~~l~v~~~~-~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          215 VAEIK-I-GIEARSVESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EEEEE-C-CSEEEEEEECCSTTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             EEEEe-c-CCCcceEEeCCCcCCCCCEEEEEEcc-CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence            33332 2 35799999999    88899998753 345665554322222222210           0123344444333


Q ss_pred             CEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCc
Q psy5768         187 FSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGV  266 (652)
Q Consensus       187 ~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~  266 (652)
                      .++|+...+.+                                                                     
T Consensus       292 ~~~~vs~~~~g---------------------------------------------------------------------  302 (543)
T 1nir_A          292 PEFIVNVKETG---------------------------------------------------------------------  302 (543)
T ss_dssp             SEEEEEETTTT---------------------------------------------------------------------
T ss_pred             CEEEEEECCCC---------------------------------------------------------------------
Confidence            33333322211                                                                     


Q ss_pred             cccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCC
Q psy5768         267 VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGS  346 (652)
Q Consensus       267 l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~  346 (652)
                                           .|..+++.+.....  +..+..   -..+..+.|++..+++|.+....++|..+++...
T Consensus       303 ---------------------~i~vvd~~~~~~l~--~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          303 ---------------------KVLLVNYKDIDNLT--VTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             ---------------------EEEEEECTTSSSCE--EEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ---------------------eEEEEEecCCCcce--eEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence                                 12222221110000  001110   1224457788888888888887888888887654


Q ss_pred             cceEEeeccCce---eeeEE-EccCCEEEEEeC-CCCeEEEEEcCCCCC---ccEEEEEeC-CCCCceEEEEeCCCCEEE
Q psy5768         347 NHRVLLERQGSV---EGLAY-EYVHNYLYWTCN-NDATINKIDLDSPKA---QRIVVVRLG-QHDKPRGIDIDSCDSRIY  417 (652)
Q Consensus       347 ~~~~i~~~~~~~---~glAv-Dw~~~~LYwtd~-~~~~I~~~~~~~~~~---~~~~~~~~~-~~~~P~~Iavdp~~g~Ly  417 (652)
                      .....+..-..|   .|.++ ++..+.+|.+.. ..++|.+++++....   ..+.+-.+. ....+..|+++|...+||
T Consensus       357 ~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~  436 (543)
T 1nir_A          357 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  436 (543)
T ss_dssp             EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEE
T ss_pred             eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEE
Confidence            333333222223   24544 566688888875 568999999875211   012222222 335678999999888888


Q ss_pred             EEec-CCC---CCceEEEeecCCCce-EEE--------EcCCCCCceEEEecCCCEEEEEeC----CCCeEEEEecCCCc
Q psy5768         418 WTNW-NSH---LPSIQRAFFSGFGTE-SII--------TTDITMPNALALDHQAEKLFWGDA----RLDKIERCDYDGTN  480 (652)
Q Consensus       418 wtd~-~~~---~~~I~r~~ldG~~~~-~l~--------~~~l~~P~glaiD~~~~~LYw~D~----~~~~I~~~~ldG~~  480 (652)
                      .... +..   ...|...+++..... ..+        .+...+|..+++.++++.||++..    ..+.|..+|.....
T Consensus       437 v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          437 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence            7652 211   236777777644332 332        222456778999999999998853    34788888876544


Q ss_pred             eEEEec-CCCCceeEEE
Q psy5768         481 RIVLSK-ISPLHPFDMA  496 (652)
Q Consensus       481 ~~~l~~-~~~~~p~gla  496 (652)
                      .+..+. ..+..|-|.-
T Consensus       517 ~~~~i~~~~~~~p~g~~  533 (543)
T 1nir_A          517 LKAVVKDPRLITPTGKF  533 (543)
T ss_dssp             EEEEECCTTCCSEEEEE
T ss_pred             EEEeecCCCccCCCeee
Confidence            433333 2356676653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=1.6e-07  Score=98.85  Aligned_cols=299  Identities=12%  Similarity=0.108  Sum_probs=167.7

Q ss_pred             EEEccCCcEEEEeCC----CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC--------CCCeEEEEeC
Q psy5768          94 AVDWIAQNIYWSDPK----ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG--------KIPLIARAGL  161 (652)
Q Consensus        94 avDw~~~~lY~~d~~----~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~--------~~~~I~~~~l  161 (652)
                      +.++..+++|++|..    .+.|.++|.+......-+..+ ..|. ++++|...+||.+++.        ....|...+.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            335568899999986    679999998755443334433 4586 9999999999999842        1234666665


Q ss_pred             CCCCcEEEEeec-------ccCceeEEEeccCCEEEEEeCC-CCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeecc
Q psy5768         162 DGKKQTILAQEI-------IMPIKDITLDLKFFSAFYRNLS-KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDA  233 (652)
Q Consensus       162 dg~~~~~~~~~~-------~~~p~gl~lD~~~~~ly~~d~~-g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~  233 (652)
                      .......-+.-.       ...|.++++++.+++||+.+.. .+...+|-  . ....++...+                
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID--~-~t~~vv~tI~----------------  177 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD--L-EGKAFKRMLD----------------  177 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE--T-TTTEEEEEEE----------------
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE--C-CCCcEEEEEE----------------
Confidence            543332222111       1379999999999999999875 33333331  1 1111110000                


Q ss_pred             CCCCCCCCCCCCCCcccceecCC-CceEEEeCCccccCCCcccccceEEEEeee--cceeEEecCCCCCCCCCceeeeec
Q psy5768         234 QTGTNPCGVNNGGCAELCLYNGV-SAVCACAHGVVAQDGKSCSEYDAFIMYSRV--NRIDSIHMTDKSDLNSPFESIRNS  310 (652)
Q Consensus       234 q~~~n~C~~~ng~Cs~lC~~~~~-~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~--~~i~~i~l~~~~~~~~p~~~~~~~  310 (652)
                                .++|... .+.+. .+...|+.|.+             +++...  +.+.... ....+...  .++   
T Consensus       178 ----------v~g~~~~-~P~g~~~~~~~~~DG~~-------------~~v~~~~~g~v~~~~-~~~~~~~~--~~~---  227 (386)
T 3sjl_D          178 ----------VPDCYHI-FPTAPDTFFMHCRDGSL-------------AKVAFGTEGTPEITH-TEVFHPED--EFL---  227 (386)
T ss_dssp             ----------CCSEEEE-EEEETTEEEEEETTSCE-------------EEEECCSSSCCEEEE-CCCCSCTT--SCB---
T ss_pred             ----------CCCccee-ecCCCceeEEECCCCCE-------------EEEECCCCCeEEEee-cceecccc--ccc---
Confidence                      1223211 11111 34566776632             122211  1111000 00000000  011   


Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe--e--------ccCceee---eEEEccCCEEEEEeCC-
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL--E--------RQGSVEG---LAYEYVHNYLYWTCNN-  376 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~--------~~~~~~g---lAvDw~~~~LYwtd~~-  376 (652)
                        +.   ..+|+...++++|+.. .++++.+++.+...+.+-  +        .-..|.|   +|+|..++.||.+... 
T Consensus       228 --~~---~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          228 --IN---HPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             --CS---CCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             --cc---cceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence              01   1256677788777655 478999988765433221  1        0113545   9999999999998641 


Q ss_pred             --------CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC-EEEEEecCCCCCceEEEeecCCCceEEEEc-CC
Q psy5768         377 --------DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS-RIYWTNWNSHLPSIQRAFFSGFGTESIITT-DI  446 (652)
Q Consensus       377 --------~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g-~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-~l  446 (652)
                              .++|.++++...+    .+-.+.....|.+|+++|... +||.++++..  .|...+  ....+++-+. ..
T Consensus       302 ~~~~hk~~~~~V~viD~~t~k----v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~--~VsViD--~~t~k~~~~i~~~  373 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGE----RLAKFEMGHEIDSINVSQDEKPLLYALSTGDK--TLYIHD--AESGEELRSVNQL  373 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECSSSSCEEEEEETTTT--EEEEEE--TTTCCEEEEECCC
T ss_pred             cccccCCCCCEEEEEECCCCe----EEEEEECCCCcceEEECCCCCeEEEEEcCCCC--eEEEEE--CCCCcEEEEecCC
Confidence                    2579999986533    222222235788999999875 7999998754  665444  3344444332 35


Q ss_pred             CCCceEEEecC
Q psy5768         447 TMPNALALDHQ  457 (652)
Q Consensus       447 ~~P~glaiD~~  457 (652)
                      ..|+.|.+..+
T Consensus       374 ~~p~~l~~s~d  384 (386)
T 3sjl_D          374 GHGPQVITTAD  384 (386)
T ss_dssp             CSSCCEEEECC
T ss_pred             CCCceeEECCc
Confidence            68888887643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.99  E-value=1.9e-07  Score=93.14  Aligned_cols=191  Identities=13%  Similarity=0.007  Sum_probs=133.0

Q ss_pred             eEEEEEEEcCCCeEEEeec--ccccEEEEeccCCcce-EEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDI--QKGTINSVFFNGSNHR-VLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~--~~~~I~~~~~~g~~~~-~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      .+.+++|+.. ++||.+..  ..++|.++++...... .+. .....++|++++  ++.||+++...+.+.+++....  
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~--   96 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL--   96 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence            3578999875 79999974  4678999998754332 222 233356677776  7899999999999999998653  


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----CCCCCceEEEecCCCEEEEEe
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----DITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~P~glaiD~~~~~LYw~D  465 (652)
                        +.+-..... .|.++.+.+..++||.++ +.  .+|...+........-+..     .+..|++|.+.  +++||...
T Consensus        97 --~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs--~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~  168 (266)
T 2iwa_A           97 --SNIKNFTHQ-MKDGWGLATDGKILYGSD-GT--SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANI  168 (266)
T ss_dssp             --EEEEEEECC-SSSCCEEEECSSSEEEEC-SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE
T ss_pred             --cEEEEEECC-CCCeEEEEECCCEEEEEC-CC--CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEec
Confidence              333333322 466666777678999998 43  3787776655433222221     24468888887  57999999


Q ss_pred             CCCCeEEEEecCCCce-EEEecCC------------CCceeEEEEe--CCEEEEEcCCCCeEEEEEcc
Q psy5768         466 ARLDKIERCDYDGTNR-IVLSKIS------------PLHPFDMAVY--GEFIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       466 ~~~~~I~~~~ldG~~~-~~l~~~~------------~~~p~glav~--~~~lYwtd~~~~~I~~~~k~  518 (652)
                      ...+.|.++|...... ..+--.+            ...|.||++.  ++++|+|....+.|+.++..
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            8899999999965443 3332111            1468999998  46999999998988877653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.98  E-value=1.1e-07  Score=101.64  Aligned_cols=233  Identities=9%  Similarity=-0.090  Sum_probs=144.7

Q ss_pred             EEEEeee------cceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeec---------ccccEEEEecc
Q psy5768         280 FIMYSRV------NRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDI---------QKGTINSVFFN  344 (652)
Q Consensus       280 ~Ll~s~~------~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~---------~~~~I~~~~~~  344 (652)
                      .+++++.      +.|..|++. ...   .+..+...   ..+ ++++++..++||+++.         ..+.|..++..
T Consensus        86 ~vyV~n~~~~~~~~~VsVID~~-t~~---vv~~I~vG---~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           86 RVYIQDPAHFAAITQQFVIDGS-TGR---ILGMTDGG---FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             EEEEEECTTTCSSEEEEEEETT-TTE---EEEEEEEC---SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             EEEEECCCcCCCCCeEEEEECC-CCE---EEEEEECC---CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            4666654      577777762 211   22334322   346 8999999999999985         35678888875


Q ss_pred             CCcc-eEEeec-------cCceeeeEEEccCCEEEEEeCC-CCeEEEEEcCCCCCccEEEEEeCCC----C----CceEE
Q psy5768         345 GSNH-RVLLER-------QGSVEGLAYEYVHNYLYWTCNN-DATINKIDLDSPKAQRIVVVRLGQH----D----KPRGI  407 (652)
Q Consensus       345 g~~~-~~i~~~-------~~~~~glAvDw~~~~LYwtd~~-~~~I~~~~~~~~~~~~~~~~~~~~~----~----~P~~I  407 (652)
                      .... ..+.-+       ...|.+++++..++.||.++.. .++|.++++...    +.+-.+...    .    ....+
T Consensus       158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~----kvv~~I~v~g~~~~~p~g~~~~v  233 (426)
T 3c75_H          158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK----TFDRMLDVPDCYHIFPASPTVFY  233 (426)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSEEEEEEEETTEEE
T ss_pred             CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC----eEEEEEEcCCceeeccCCCcEEE
Confidence            4332 233222       2479999999999999999875 788999998653    222221110    1    12225


Q ss_pred             EEeCCCCEEEEEecCCC-----------------------------------CCceEEEeecCCCceEEEEcCC------
Q psy5768         408 DIDSCDSRIYWTNWNSH-----------------------------------LPSIQRAFFSGFGTESIITTDI------  446 (652)
Q Consensus       408 avdp~~g~Lywtd~~~~-----------------------------------~~~I~r~~ldG~~~~~l~~~~l------  446 (652)
                      ++.+....+|++. ...                                   .+++..+++.+....++-...+      
T Consensus       234 ~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          234 MNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            5555333333332 111                                   0133333333322211110000      


Q ss_pred             ---CCCce---EEEecCCCEEEEEeC---------CCCeEEEEecCCCceEEEecCCCCceeEEEEe--CC-EEEEEcCC
Q psy5768         447 ---TMPNA---LALDHQAEKLFWGDA---------RLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GE-FIFWTDWV  508 (652)
Q Consensus       447 ---~~P~g---laiD~~~~~LYw~D~---------~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~-~lYwtd~~  508 (652)
                         ..|.|   ++++.++++||++..         ..+.|..+|+.......-+... ..|.+|++.  +. ++|.+.+.
T Consensus       313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred             ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCC
Confidence               12555   899999999999974         2357999998765544333322 479999997  55 89999999


Q ss_pred             CCeEEEEEccCCceEEEE
Q psy5768         509 IHAVLRANKYTGEEVYTL  526 (652)
Q Consensus       509 ~~~I~~~~k~~g~~~~~~  526 (652)
                      .+.|..+|..+++.++.+
T Consensus       392 s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEe
Confidence            999999999999988777

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.97  E-value=1e-10  Score=84.17  Aligned_cols=37  Identities=32%  Similarity=0.688  Sum_probs=34.8

Q ss_pred             ccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       590 ~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      +..|.+.+|+|.+|+||+..|+|||..||.|||||..
T Consensus         4 p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             CCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc
Confidence            4679999999999999999999999999999999976

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.96  E-value=1.4e-07  Score=93.53  Aligned_cols=178  Identities=10%  Similarity=0.075  Sum_probs=123.5

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCcc-EE--EEe
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR-ET--VVS   79 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~-~~--v~~   79 (652)
                      +++++.....|+.+|++|+...++...      ....+.||+++ .++++++++  ....+++.+.++.... ..  ...
T Consensus        41 L~aV~d~~~~I~~ld~~g~v~~~i~l~------g~~D~EGIa~~-~~g~~~vs~--E~~~~l~~~~v~~~~~i~~~~~~~  111 (255)
T 3qqz_A           41 LFSTINKPAAIVEMTTNGDLIRTIPLD------FVKDLETIEYI-GDNQFVISD--ERDYAIYVISLTPNSEVKILKKIK  111 (255)
T ss_dssp             EEEEEETTEEEEEEETTCCEEEEEECS------SCSSEEEEEEC-STTEEEEEE--TTTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCEEEEEecC------CCCChHHeEEe-CCCEEEEEE--CCCCcEEEEEcCCCCeeeeeeeec
Confidence            555555688999999999988888642      34789999998 567888888  7778888887664331 11  122


Q ss_pred             CC-----CcCCccCCCCcEEEEccCCcEEEEeCCCC-EEEEEE--cCCCcEEEEEe------CCCCCceeEEEcCCCCeE
Q psy5768          80 QK-----KYPAVTACNLHIAVDWIAQNIYWSDPKEN-VIEVAR--LTGQYRYVLIS------GGVDQPSALAVDPESGYL  145 (652)
Q Consensus        80 ~~-----~~~~p~~~~~~lavDw~~~~lY~~d~~~~-~I~v~~--~dg~~~~~l~~------~~~~~P~~iavd~~~g~l  145 (652)
                      ..     .....+    |||+|..+++||.+..... .|...+  +.+....++-.      ..+..|.+|++||.+|.|
T Consensus       112 ~~~~~~~~N~g~E----GLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l  187 (255)
T 3qqz_A          112 IPLQESPTNCGFE----GLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL  187 (255)
T ss_dssp             CCCSSCCCSSCCE----EEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred             cccccccccCCcc----eEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence            11     012248    9999999999999875544 676666  12222233211      145689999999999999


Q ss_pred             EEEecCCCCeEEEEeCCCCCcEEEEee--------cccCceeEEEeccCCEEEEEeCC
Q psy5768         146 FWSESGKIPLIARAGLDGKKQTILAQE--------IIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       146 ywtd~~~~~~I~~~~ldg~~~~~~~~~--------~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      |..+.. ...+...+++|.-...+--.        .+.+|.|||+|.. ++||++.-.
T Consensus       188 liLS~~-s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~-G~lyIvsE~  243 (255)
T 3qqz_A          188 LVLSHE-SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYIVSEP  243 (255)
T ss_dssp             EEEETT-TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTT-CCEEEEETT
T ss_pred             EEEECC-CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCC-CCEEEEcCC
Confidence            999764 56899999998844333222        1469999999986 469998543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.95  E-value=4.1e-08  Score=106.37  Aligned_cols=204  Identities=12%  Similarity=0.090  Sum_probs=131.2

Q ss_pred             cccceEEEEEEEcCCC-eEEEeecccccEEEEeccCCcc-eEE-------eec-----cCceeeeEEEcc---CCEEEEE
Q psy5768         311 TMMKNIIELSYDYKRK-TLFYSDIQKGTINSVFFNGSNH-RVL-------LER-----QGSVEGLAYEYV---HNYLYWT  373 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~-~lywsd~~~~~I~~~~~~g~~~-~~i-------~~~-----~~~~~glAvDw~---~~~LYwt  373 (652)
                      ..+.++.+|++.+... +||+++.. ++|+.+..+|... +.+       ..+     ...+.|||+++.   ++.||++
T Consensus        11 ~gL~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~   89 (463)
T 2wg3_C           11 SGLRQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS   89 (463)
T ss_dssp             EEESSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred             cCCCCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence            4567899999998874 89999874 7899987666421 111       122     457889999974   6789987


Q ss_pred             eCCC------------CeEEEEEcCCCC-----C-ccEEEEEe---CCCCCceEEEEeCCCCEEEEEecCC---------
Q psy5768         374 CNND------------ATINKIDLDSPK-----A-QRIVVVRL---GQHDKPRGIDIDSCDSRIYWTNWNS---------  423 (652)
Q Consensus       374 d~~~------------~~I~~~~~~~~~-----~-~~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~~~---------  423 (652)
                      .+..            .+|.+..+....     . ..++++..   ........|+++| .|+||++-...         
T Consensus        90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~  168 (463)
T 2wg3_C           90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEE  168 (463)
T ss_dssp             EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHH
T ss_pred             EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCcccc
Confidence            6421            367777775321     1 13444433   2345677899999 78999984321         


Q ss_pred             ------CCCceEEEeecCCC-------------------ceEEEEcCCCCCceEEEecCCC------EEEEEeC-C----
Q psy5768         424 ------HLPSIQRAFFSGFG-------------------TESIITTDITMPNALALDHQAE------KLFWGDA-R----  467 (652)
Q Consensus       424 ------~~~~I~r~~ldG~~-------------------~~~l~~~~l~~P~glaiD~~~~------~LYw~D~-~----  467 (652)
                            ..++|.|.+.||..                   +..|+...++.|.||++|+.++      +||.+|. +    
T Consensus       169 ~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~  248 (463)
T 2wg3_C          169 MDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRS  248 (463)
T ss_dssp             CTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------
T ss_pred             ccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCC
Confidence                  14689999999951                   3457778999999999998854      6777885 2    


Q ss_pred             CCeEEEEecCCC-----ceEEEecCC-CCceeEEEEeCC--------EEEEEcCCCCeEEEEEcc
Q psy5768         468 LDKIERCDYDGT-----NRIVLSKIS-PLHPFDMAVYGE--------FIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       468 ~~~I~~~~ldG~-----~~~~l~~~~-~~~p~glav~~~--------~lYwtd~~~~~I~~~~k~  518 (652)
                      .+.|..+. .|.     .+....... ...|-|++++.+        .+++.++. +.|+++...
T Consensus       249 ~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~  311 (463)
T 2wg3_C          249 SARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQS  311 (463)
T ss_dssp             CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-
T ss_pred             CCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeC
Confidence            13344432 222     111111111 146899999754        38889987 778888643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.94  E-value=1.6e-07  Score=93.69  Aligned_cols=162  Identities=11%  Similarity=0.100  Sum_probs=115.5

Q ss_pred             ceeeeEEEccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         357 SVEGLAYEYVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      .|.||+++.. +.||.+.+.  .++|.++++...+  ....+.+.....+.+++++  .+.||+++|...  .+...+.+
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~--~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN--IGFIYDRR   94 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEETTCS--EEEEEETT
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEe--CCEEEEEEecCC--EEEEEECC
Confidence            5799999975 699999753  6799999986532  2222333344455677777  479999999754  77776655


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCce-EEEecC----CCCceeEEEEeCCEEEEEcCCC
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR-IVLSKI----SPLHPFDMAVYGEFIFWTDWVI  509 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~-~~l~~~----~~~~p~glav~~~~lYwtd~~~  509 (652)
                        ..+++-.-....|.|+.+.+++++||.++ +.++|..+|...... ..+...    ....|.+|.+.++.||.+.|.+
T Consensus        95 --t~~v~~~i~~g~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~  171 (266)
T 2iwa_A           95 --TLSNIKNFTHQMKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQT  171 (266)
T ss_dssp             --TTEEEEEEECCSSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTS
T ss_pred             --CCcEEEEEECCCCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCC
Confidence              33343332222356666666699999999 688999999887543 233211    1335788988888999999999


Q ss_pred             CeEEEEEccCCceEEEEec
Q psy5768         510 HAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       510 ~~I~~~~k~~g~~~~~~~~  528 (652)
                      +.|.++|..+|+....+..
T Consensus       172 ~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             SEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEEC
Confidence            9999999999998888864

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.94  E-value=3.9e-10  Score=75.98  Aligned_cols=35  Identities=43%  Similarity=0.801  Sum_probs=32.7

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      .|.+.+|+|.+|+||+..|+|||..||.|||||..
T Consensus         1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCCceEcCCCCeechhhccCCCCCCCCCccccC
Confidence            37788999999999999999999999999999975

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.94  E-value=1.7e-06  Score=88.43  Aligned_cols=293  Identities=6%  Similarity=-0.032  Sum_probs=170.5

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      ++|+....+.|.++|+.............    ....|.++++++.++++|+++  ...+.|+.+++........+..+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~--~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIAD----AGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTT----CTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCB
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCC----CCCCccceEEcCCCCEEEEEe--CCCCeEEEEECCCCCeEeeEEcCC
Confidence            56777788999999997544433332110    001478999999988999999  777899999986543332233220


Q ss_pred             c----CCccCCCCcEEEEccCCcEEEEeC-----------CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEE
Q psy5768          83 Y----PAVTACNLHIAVDWIAQNIYWSDP-----------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFW  147 (652)
Q Consensus        83 ~----~~p~~~~~~lavDw~~~~lY~~d~-----------~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lyw  147 (652)
                      .    ..|.    +++++..++.||+++.           ..+.|.+.++++......+.. -..|..++++|...+||.
T Consensus        77 ~~~~~~~~~----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T 1pby_B           77 PEERVKSLF----GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             TTEEEECTT----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             ccccccccc----ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEE
Confidence            1    1466    9999988889999962           258899999876544434443 357999999997778998


Q ss_pred             EecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceee
Q psy5768         148 SESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIK  227 (652)
Q Consensus       148 td~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~  227 (652)
                      ++    ..|...++........+... .++..+++++.+.+||+....++....+                         
T Consensus       152 ~~----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~-------------------------  201 (337)
T 1pby_B          152 LG----RDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATP-------------------------  201 (337)
T ss_dssp             ES----SSEEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEE-------------------------
T ss_pred             eC----CeEEEEECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeee-------------------------
Confidence            83    35666666543322222111 1122334444444444332221111000                         


Q ss_pred             eeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceee
Q psy5768         228 IYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESI  307 (652)
Q Consensus       228 v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~  307 (652)
                       |.....         .                         ++.  ..+.     .....|..+++..+ ..    ..+
T Consensus       202 -~~~~~~---------~-------------------------~~~--~~~~-----~~~~~v~~~d~~~~-~~----~~~  234 (337)
T 1pby_B          202 -FYTARK---------D-------------------------IDP--ADPT-----AYRTGLLTMDLETG-EM----AMR  234 (337)
T ss_dssp             -EEEEBT---------T-------------------------SCT--TSGG-----GEEEEEEEEETTTC-CE----EEE
T ss_pred             -eecccc---------c-------------------------ccc--cccc-----ccccceEEEeCCCC-Cc----eEe
Confidence             000000         0                         000  0000     01113444444211 10    011


Q ss_pred             eeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         308 RNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       308 ~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ........+.++++++..+.||.+   .+.|+.+++........+..-..|.++++++.++.||.+ ...+.|.++++..
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~  310 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG-GALGDLAAYDAET  310 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE-SBSSEEEEEETTT
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE-cCCCcEEEEECcC
Confidence            111111346788999988889988   378998888754433333434578999999999999987 4578899999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.92  E-value=7.3e-06  Score=85.81  Aligned_cols=292  Identities=9%  Similarity=-0.014  Sum_probs=170.1

Q ss_pred             CeEEEecCCC-CeEEEEec--CCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC--CCccE
Q psy5768           1 MFIAVSSPTQ-SKIVVCNL--EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD--GTKRE   75 (652)
Q Consensus         1 ~~i~v~~~~~-~~I~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d--gs~~~   75 (652)
                      +.++|.+++. +.|+.+.+  +......+....   ......|..+++++..++||.++  ..  .|..++++  |... 
T Consensus         3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~---~~~~~~~~~~a~spdg~~l~~~~--~~--~v~~~~~~~~g~~~-   74 (365)
T 1jof_A            3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE---IPQDEPISWMTFDHERKNIYGAA--MK--KWSSFAVKSPTEIV-   74 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEE---CCTTCCCSEEEECTTSSEEEEEE--BT--EEEEEEEEETTEEE-
T ss_pred             EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEc---cCCCCCCcEEEECCCCCEEEEEc--cc--eEEEEEECCCCCEE-
Confidence            3689999875 57876654  333333332110   01345789999999999999988  44  67777664  4332 


Q ss_pred             EEEe-CCCcCCccCCCCcEEEEccCCcEE--EEe-------C-----CCCEEEEEEcC--CCcEEEEEe---CCCCCcee
Q psy5768          76 TVVS-QKKYPAVTACNLHIAVDWIAQNIY--WSD-------P-----KENVIEVARLT--GQYRYVLIS---GGVDQPSA  135 (652)
Q Consensus        76 ~v~~-~~~~~~p~~~~~~lavDw~~~~lY--~~d-------~-----~~~~I~v~~~d--g~~~~~l~~---~~~~~P~~  135 (652)
                      .+.. .. -+.|.    +++++..++.||  .++       .     ..+.+.+.+++  |+....+..   .....|.+
T Consensus        75 ~~~~~~~-~g~~~----~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  149 (365)
T 1jof_A           75 HEASHPI-GGHPR----ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG  149 (365)
T ss_dssp             EEEEEEC-CSSGG----GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred             EeeEeec-CCCCc----cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE
Confidence            2222 11 13466    888887666434  343       1     45677777764  554433321   23468999


Q ss_pred             EEEcCCCCeEEEEecCCCCeEEEEeCC-CCCcEEEEeec----ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCc
Q psy5768         136 LAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEI----IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDV  210 (652)
Q Consensus       136 iavd~~~g~lywtd~~~~~~I~~~~ld-g~~~~~~~~~~----~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~  210 (652)
                      ++++|...+||.++.+ ...|...+++ ......+....    -..|.++++++.+++||..+..++..+.+..+.    
T Consensus       150 ~~~spdG~~l~~~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~----  224 (365)
T 1jof_A          150 MVFDPTETYLYSADLT-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP----  224 (365)
T ss_dssp             EEECTTSSEEEEEETT-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT----
T ss_pred             EEECCCCCEEEEEcCC-CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC----
Confidence            9999977789999976 4578888876 22222211111    346999999999999998876544332221100    


Q ss_pred             eEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeeccee
Q psy5768         211 STISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRID  290 (652)
Q Consensus       211 ~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~  290 (652)
                             .                                                   +|+        +..    .+.
T Consensus       225 -------~---------------------------------------------------~g~--------~~~----~~~  234 (365)
T 1jof_A          225 -------A---------------------------------------------------THM--------PVY----THH  234 (365)
T ss_dssp             -------T---------------------------------------------------TCC--------EEE----EEE
T ss_pred             -------C---------------------------------------------------CCc--------EEE----ccc
Confidence                   0                                                   000        000    000


Q ss_pred             EEecCCCCCC---CCCceeeeeccccceEEEEE-EEcCCCeEEEeecccc-----cEEEEeccC-CcceE---Eee-ccC
Q psy5768         291 SIHMTDKSDL---NSPFESIRNSTMMKNIIELS-YDYKRKTLFYSDIQKG-----TINSVFFNG-SNHRV---LLE-RQG  356 (652)
Q Consensus       291 ~i~l~~~~~~---~~p~~~~~~~~~~~~~~~v~-~D~~~~~lywsd~~~~-----~I~~~~~~g-~~~~~---i~~-~~~  356 (652)
                      .+.. .+...   ..+..      ....+.+++ +++..+.||.++...+     +|...+++. .....   ... ...
T Consensus       235 ~~~~-~~~~~~g~~~~~~------~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~  307 (365)
T 1jof_A          235 SFPL-IPPGIPDRDPETG------KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             EEES-SCTTCCCBCTTTS------SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             eEEc-CCCCcCCcccccc------cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC
Confidence            0110 00000   00000      011356788 8888888998886554     777777642 22222   122 234


Q ss_pred             ceeeeEEEc---cCCEEEEEeCCCCeEEEEEcCC
Q psy5768         357 SVEGLAYEY---VHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       357 ~~~glAvDw---~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      .|.++|+++   .++.||.++...++|.+.+++.
T Consensus       308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            689999999   6999999998878888888765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.92  E-value=1.1e-05  Score=85.01  Aligned_cols=107  Identities=7%  Similarity=-0.140  Sum_probs=69.0

Q ss_pred             EECCCCEEEEEeccC-Ccc---eEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeC---------CCCE
Q psy5768          45 VWPVKGKMFWSNVTK-QVV---TIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDP---------KENV  111 (652)
Q Consensus        45 ~d~~~~~lyw~d~~~-~~~---~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~---------~~~~  111 (652)
                      ..+..+++|.+|  . +..   .|+.++.+......-+..+      ..| +|++.+..+.||+++.         ..+.
T Consensus        28 ~~~~~~~~yv~~--~~~~~~~~~v~v~D~~t~~~~~~i~~g------~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           28 PGADGRRSYINL--PAHHSAIIQQWVLDAGSGSILGHVNGG------FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCCEEEEeC--CcccCCccEEEEEECCCCeEEEEecCC------CCC-CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            336678899999  5 443   7788887633222223333      234 9999999999999984         2467


Q ss_pred             EEEEEcCC-CcEEEEEeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768         112 IEVARLTG-QYRYVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus       112 I~v~~~dg-~~~~~l~~~------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                      |.+++... +....+--.      ....|+.++++|...+||.++......|...+
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD  154 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence            88998863 322222111      02469999999988899998754234555554

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.92  E-value=7.4e-10  Score=76.84  Aligned_cols=38  Identities=39%  Similarity=0.914  Sum_probs=34.2

Q ss_pred             cccCCCceeecc-CeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCSD-GMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       591 ~~C~~~~f~C~~-g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      ..|.+.+|+|.+ |.||+..|+|||+.||.|||||..  |.
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~--C~   40 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS--CE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT--CC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC--CC
Confidence            468889999985 899999999999999999999976  63

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.91  E-value=5.3e-10  Score=104.39  Aligned_cols=61  Identities=23%  Similarity=0.443  Sum_probs=52.2

Q ss_pred             ccccCCCceeec--cCeecCCccCCCCCCCCCCCCCCCCCCCCCC-CCCCCe--eecCCCCcccCC
Q psy5768         590 NTVCSEHDFKCS--DGMCIPFNQTCDRVYNCHDKSDEGILYCAMR-DCRPGY--FKCDNNKCILSS  650 (652)
Q Consensus       590 ~~~C~~~~f~C~--~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~-~C~~~~--f~C~~~~Ci~~~  650 (652)
                      ...|.+.+|+|.  +|.||+..|.|||.+||.|||||....|... +|.+.+  ++|.++.|+...
T Consensus        50 ~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d~C~kr~  115 (220)
T 2gtl_N           50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLARE  115 (220)
T ss_dssp             CCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEECSSCCCC
T ss_pred             CCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCChhhcCC
Confidence            457888999995  5899999999999999999999975669887 998765  679999998653

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.91  E-value=2.6e-10  Score=80.05  Aligned_cols=40  Identities=45%  Similarity=0.865  Sum_probs=35.8

Q ss_pred             cccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       591 ~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      ..|.+.+|+|.+|.||+..|+|||+.||.|+|||....|.
T Consensus         3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~   42 (44)
T 1j8e_A            3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT   42 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHHT
T ss_pred             CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCcccC
Confidence            4688899999999999999999999999999999874453

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=7.9e-07  Score=95.06  Aligned_cols=275  Identities=9%  Similarity=0.069  Sum_probs=152.8

Q ss_pred             ccCCcEEEEeCCC----CEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC--------CCCeEEEEeCCCC
Q psy5768          97 WIAQNIYWSDPKE----NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG--------KIPLIARAGLDGK  164 (652)
Q Consensus        97 w~~~~lY~~d~~~----~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~--------~~~~I~~~~ldg~  164 (652)
                      +..+++|+++...    +.|.++|++......-+..+ ..| +|+++|...+||++++.        ....|...+....
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            3467899999865    79999998765444334433 468 99999999999999852        1235677665433


Q ss_pred             CcEEEEeec-------ccCceeEEEeccCCEEEEEeCC-CCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCC
Q psy5768         165 KQTILAQEI-------IMPIKDITLDLKFFSAFYRNLS-KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTG  236 (652)
Q Consensus       165 ~~~~~~~~~-------~~~p~gl~lD~~~~~ly~~d~~-g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~  236 (652)
                      ....-+.-.       ...|.++++++.+++||+.+.. .+...+|  +. ....++..          |.+        
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVI--D~-~t~kvv~~----------I~v--------  218 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVV--DL-EGKTFDRM----------LDV--------  218 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEE--ET-TTTEEEEE----------EEC--------
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEE--EC-CCCeEEEE----------EEc--------
Confidence            332212111       2469999999999999999875 3333332  11 11111000          110        


Q ss_pred             CCCCCCCCCCCcccceecC-CCceEEEeCCccccCCCcccccceEEEEee-ecceeEEe--cCCCCCCCCCceeeeeccc
Q psy5768         237 TNPCGVNNGGCAELCLYNG-VSAVCACAHGVVAQDGKSCSEYDAFIMYSR-VNRIDSIH--MTDKSDLNSPFESIRNSTM  312 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~-~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~-~~~i~~i~--l~~~~~~~~p~~~~~~~~~  312 (652)
                              ++|.++ ...+ ..|.-.|+.|.             .+++.. ...+....  .-+. . ..|   +     
T Consensus       219 --------~g~~~~-~p~g~~~~v~~~~dG~-------------~~~V~~~~~~v~~~~~~~~~v-~-~~p---~-----  266 (426)
T 3c75_H          219 --------PDCYHI-FPASPTVFYMNCRDGS-------------LARVDFADGETKVTNTEVFHT-E-DEL---L-----  266 (426)
T ss_dssp             --------CSEEEE-EEEETTEEEEEETTSS-------------EEEEECCTTCCEEEECCCCSC-T-TSC---B-----
T ss_pred             --------CCceee-ccCCCcEEEEEcCCCC-------------EEEEECCCCcEEEEeeeeecc-C-CCc---e-----
Confidence                    122110 0000 01223333332             111111 01111000  0000 0 000   0     


Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe--e--------ccCceee---eEEEccCCEEEEEeCC---
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL--E--------RQGSVEG---LAYEYVHNYLYWTCNN---  376 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~--------~~~~~~g---lAvDw~~~~LYwtd~~---  376 (652)
                         ...+.|....+++|++.. .++++.+++.+.....+-  +        .-..|.|   ++++..++.||.++..   
T Consensus       267 ---~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          267 ---INHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             ---CSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             ---eeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence               012355666677777765 467888877654322211  0        0013555   9999999999999742   


Q ss_pred             ------CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC-EEEEEecCCCCCceEEEeecCC
Q psy5768         377 ------DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS-RIYWTNWNSHLPSIQRAFFSGF  436 (652)
Q Consensus       377 ------~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g-~Lywtd~~~~~~~I~r~~ldG~  436 (652)
                            .++|.++++...+    .+-.+.....|.+|+++|... +||.+.|..+  .|...++...
T Consensus       343 gthk~~s~~VsVID~~T~k----vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~--~VsVID~~t~  403 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETGE----RINKIELGHEIDSINVSQDAEPLLYALSAGTQ--TLHIYDAATG  403 (426)
T ss_dssp             TCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECCSSSCEEEEEETTTT--EEEEEETTTC
T ss_pred             ccccCCCCEEEEEECCCCe----EEEEEECCCCcCeEEEccCCCEEEEEEcCCCC--eEEEEECCCC
Confidence                  3579999987632    333322234799999999888 8999998754  6766666443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.89  E-value=1.7e-05  Score=83.58  Aligned_cols=134  Identities=11%  Similarity=0.098  Sum_probs=83.4

Q ss_pred             eEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEe--------CCCCCceE---EEEeCCCCEEEEEecCC------
Q psy5768         361 LAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL--------GQHDKPRG---IDIDSCDSRIYWTNWNS------  423 (652)
Q Consensus       361 lAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~--------~~~~~P~~---Iavdp~~g~Lywtd~~~------  423 (652)
                      .+++..++.+||+. ..+.+.++++.+..  ...+-..        .....|.+   ++++|..++||++....      
T Consensus       218 ~~~~~~~~~~~~~~-~~~~v~vid~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          218 PAQANKSGRIVWPV-YSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             ceeEecCCEEEEEc-CCceEEEEeccCCc--ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence            34555566777765 35678888775421  1111110        01123544   89999999999985421      


Q ss_pred             -CCCceEEEeecCCCceEEEEcCC-CCCceEEEecCCC-EEEEEeCCCCeEEEEecCCCceEEE-ecCCCCceeEEEEeC
Q psy5768         424 -HLPSIQRAFFSGFGTESIITTDI-TMPNALALDHQAE-KLFWGDARLDKIERCDYDGTNRIVL-SKISPLHPFDMAVYG  499 (652)
Q Consensus       424 -~~~~I~r~~ldG~~~~~l~~~~l-~~P~glaiD~~~~-~LYw~D~~~~~I~~~~ldG~~~~~l-~~~~~~~p~glav~~  499 (652)
                       ....|...++....  ++-.-.+ ..|.+|+++++++ +||.+....+.|..+|......... ...+ ..|++|.+++
T Consensus       295 ~~~~~V~VID~~t~~--vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG-~~P~~~~~~~  371 (373)
T 2mad_H          295 AAAKEVTSVTGLVGQ--TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG-SGPQVLSVMN  371 (373)
T ss_pred             CCCCeEEEEECCCCE--EEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCC-CCCcEEEEcc
Confidence             12367776665433  3222222 3699999999998 7888877789999999986554433 3333 7899998765


Q ss_pred             C
Q psy5768         500 E  500 (652)
Q Consensus       500 ~  500 (652)
                      +
T Consensus       372 ~  372 (373)
T 2mad_H          372 E  372 (373)
T ss_pred             c
Confidence            3

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.89  E-value=8.3e-10  Score=77.04  Aligned_cols=37  Identities=30%  Similarity=0.681  Sum_probs=34.1

Q ss_pred             ccccCCCceeecc-CeecCCccCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSD-GMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       590 ~~~C~~~~f~C~~-g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ...|.+.+|+|.+ |+||+..|+|||+.||.|||||..
T Consensus         4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            3568889999999 899999999999999999999976

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.88  E-value=1.1e-09  Score=74.73  Aligned_cols=34  Identities=32%  Similarity=0.778  Sum_probs=31.8

Q ss_pred             cCCCceeecc--CeecCCccCCCCCCCCCCCCCCCC
Q psy5768         593 CSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       593 C~~~~f~C~~--g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      |.+.+|+|.+  ++|||..|+|||..||.|||||..
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence            6778999997  899999999999999999999976

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.88  E-value=8.4e-10  Score=77.43  Aligned_cols=37  Identities=35%  Similarity=0.735  Sum_probs=32.6

Q ss_pred             ccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       590 ~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ...|.+.+|+|.+|.||+..|+|||+.||.|||||..
T Consensus         5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             ---CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC
Confidence            3468889999999999999999999999999999975

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.86  E-value=1.3e-09  Score=78.48  Aligned_cols=43  Identities=33%  Similarity=0.742  Sum_probs=36.8

Q ss_pred             ccccCCCceeec-cCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRP  636 (652)
Q Consensus       590 ~~~C~~~~f~C~-~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~  636 (652)
                      ...|.+.+|+|. +|.||+..|+|||+.||.|||||..  |.  .|.+
T Consensus         4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~--C~--~C~~   47 (50)
T 2knx_A            4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI--AA--GCLY   47 (50)
T ss_dssp             TCTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSG--GG--TCCC
T ss_pred             CCCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccc--cc--CCCC
Confidence            356888999995 8999999999999999999999986  63  3654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.83  E-value=6.1e-06  Score=86.59  Aligned_cols=216  Identities=9%  Similarity=-0.021  Sum_probs=134.2

Q ss_pred             ceEEEEEEEcCCCeEEEeec---------ccccEEEEeccCCcc-eEEee------ccCceeeeEEEccCCEEEEEeCC-
Q psy5768         314 KNIIELSYDYKRKTLFYSDI---------QKGTINSVFFNGSNH-RVLLE------RQGSVEGLAYEYVHNYLYWTCNN-  376 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~---------~~~~I~~~~~~g~~~-~~i~~------~~~~~~glAvDw~~~~LYwtd~~-  376 (652)
                      ..+ .+++++..++||.++.         ..+.|..+++..... ..+..      ....|.+|++++.++.||.++.. 
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            346 8999999999999974         245688888653222 22221      12479999999999999999976 


Q ss_pred             CCeEEEEEcCCCCCccEEEEE-eC----------CCCCceEEEEeCCCCEEEEEecCCCC--------------------
Q psy5768         377 DATINKIDLDSPKAQRIVVVR-LG----------QHDKPRGIDIDSCDSRIYWTNWNSHL--------------------  425 (652)
Q Consensus       377 ~~~I~~~~~~~~~~~~~~~~~-~~----------~~~~P~~Iavdp~~g~Lywtd~~~~~--------------------  425 (652)
                      .++|.++++...    +.+.. ..          ....++.+++.+....++|+......                    
T Consensus       130 ~~~v~v~d~~~~----~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~  205 (361)
T 2oiz_A          130 ATSIGIVDVAKG----DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFI  205 (361)
T ss_dssp             SEEEEEEETTTT----EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCS
T ss_pred             CCeEEEEECCCC----cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEE
Confidence            688999998642    23222 11          11123446666655555554321110                    


Q ss_pred             ---------------CceEEEeecCCCceEEEEcC--------CC-CCce---EEEecCCCEEEEEeC----------CC
Q psy5768         426 ---------------PSIQRAFFSGFGTESIITTD--------IT-MPNA---LALDHQAEKLFWGDA----------RL  468 (652)
Q Consensus       426 ---------------~~I~r~~ldG~~~~~l~~~~--------l~-~P~g---laiD~~~~~LYw~D~----------~~  468 (652)
                                     ++|..+.+.+.....+-...        .. .|.|   +++++.+++||.+..          ..
T Consensus       206 ~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          206 APALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             CCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             EecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence                           12222333222222111100        11 2454   999999999999854          13


Q ss_pred             CeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCC--ceEEEEecccCCcceeEE
Q psy5768         469 DKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTG--EEVYTLRKNIRRPMGIVA  538 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g--~~~~~~~~~~~~p~~i~~  538 (652)
                      +.|..+|+.......-+... . |.+|++.  +.+||.+++  +.|..++..++  +.+..+..--..|.++.+
T Consensus       286 ~~v~viD~~t~~~v~~i~~~-~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGR-D-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECT-T-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             ceEEEEECCCCcEEEEEecC-C-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence            57999998765443333433 3 9999996  569999986  88999999888  776666432356777654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.81  E-value=5.3e-07  Score=97.61  Aligned_cols=276  Identities=13%  Similarity=0.168  Sum_probs=140.6

Q ss_pred             ceEEEEEEEcC---CCeEEEeecc------------cccEEEEeccCC--------cceEEee-----ccCceeeeEEEc
Q psy5768         314 KNIIELSYDYK---RKTLFYSDIQ------------KGTINSVFFNGS--------NHRVLLE-----RQGSVEGLAYEY  365 (652)
Q Consensus       314 ~~~~~v~~D~~---~~~lywsd~~------------~~~I~~~~~~g~--------~~~~i~~-----~~~~~~glAvDw  365 (652)
                      .-+.+|++++.   ++.||++-..            ..+|.|+.+...        ..++|++     ..+....|++++
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp  148 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP  148 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence            44678999985   6788887532            147888887531        2344442     234566799998


Q ss_pred             cCCEEEEEeCC-----------------CCeEEEEEcCCCC---------C--------ccEEEEEeCCCCCceEEEEeC
Q psy5768         366 VHNYLYWTCNN-----------------DATINKIDLDSPK---------A--------QRIVVVRLGQHDKPRGIDIDS  411 (652)
Q Consensus       366 ~~~~LYwtd~~-----------------~~~I~~~~~~~~~---------~--------~~~~~~~~~~~~~P~~Iavdp  411 (652)
                      .+ +||++-..                 .++|.|++.++..         .        .+..+.. ..+.+|.+|++||
T Consensus       149 DG-~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RNp~gla~dp  226 (463)
T 2wg3_C          149 DG-FLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHDPGRCAVDR  226 (463)
T ss_dssp             TS-CEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSSCCBEEEES
T ss_pred             CC-cEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCCcceEEECC
Confidence            55 89998543                 3579999998831         0        0112333 4789999999999


Q ss_pred             CCC------EEEEEec-CCC--CCceEEEeecCCCc---eEEEEcC-C--CCCceEEEec------CCCEEEEEeCCCCe
Q psy5768         412 CDS------RIYWTNW-NSH--LPSIQRAFFSGFGT---ESIITTD-I--TMPNALALDH------QAEKLFWGDARLDK  470 (652)
Q Consensus       412 ~~g------~Lywtd~-~~~--~~~I~r~~ldG~~~---~~l~~~~-l--~~P~glaiD~------~~~~LYw~D~~~~~  470 (652)
                      ..|      +||.+|. +..  ...|.++. .|.+.   ..++.-. -  ..|.|+++-.      -.+.+|++|.. ++
T Consensus       227 ~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~  304 (463)
T 2wg3_C          227 HPTDININLTILCSDSNGKNRSSARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GN  304 (463)
T ss_dssp             SCSSTTCSEEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SC
T ss_pred             CCCCcccceEEEecccCCCCCCCCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-Cc
Confidence            754      7888886 322  12444432 23221   1222211 1  3678888842      23568889886 78


Q ss_pred             EEEEecCCCc---eEEEe-c--------CCCCceeEEEEe-CCEEEEEcC-------CCCeEEEEEccCCceEEEEeccc
Q psy5768         471 IERCDYDGTN---RIVLS-K--------ISPLHPFDMAVY-GEFIFWTDW-------VIHAVLRANKYTGEEVYTLRKNI  530 (652)
Q Consensus       471 I~~~~ldG~~---~~~l~-~--------~~~~~p~glav~-~~~lYwtd~-------~~~~I~~~~k~~g~~~~~~~~~~  530 (652)
                      |.++.+++..   ....+ .        .....|.++++. ++.||++|+       ..++|+|+..-....    ....
T Consensus       305 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p~~~~----~p~~  380 (463)
T 2wg3_C          305 FLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDPKRPL----MPEE  380 (463)
T ss_dssp             EEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECTTSCS----SCGG
T ss_pred             EEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCccccc----cccc
Confidence            9999887542   22222 1        113578999998 569999997       467788876321110    0000


Q ss_pred             -CCcceeEEEeccCCCCCCCCCCCCCCCCcc-ccccCCCCceeeeccCceeeccCCcccCcccccCCCceeecc-CeecC
Q psy5768         531 -RRPMGIVAISDNLDACAKTPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSD-GMCIP  607 (652)
Q Consensus       531 -~~p~~i~~~~~~~~~~~~~~C~~~ng~Cs~-lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~-g~Ci~  607 (652)
                       ...+.       -..|....|..   .|.| .|..    ..+|.|+.||..   ..|.  ...|.+   .|.| |.|+.
T Consensus       381 C~~~~~-------g~~c~~~~C~~---~C~nG~C~~----~~~C~C~~G~~G---~~C~--~~~C~~---~C~~~g~C~~  438 (463)
T 2wg3_C          381 CRATVQ-------PAQTLTSECSR---LCRNGYCTP----TGKCCCSPGWEG---DFCR--TAKCEP---ACRHGGVCVR  438 (463)
T ss_dssp             GCCCCC-------CCCCCCCHHHH---HCCSEEECT----TSCEEECTTEES---TTSC--EECC---------------
T ss_pred             CCCCCc-------CCCCccccccC---CCCCCccCC----CCeECCCCCcCC---CcCC--cCcCCC---CCCCCCEECC
Confidence             00000       01122222321   1221 3443    258999999975   3574  345764   7887 58886


Q ss_pred             CccCCCCCCCCCCCCCC
Q psy5768         608 FNQTCDRVYNCHDKSDE  624 (652)
Q Consensus       608 ~~~~Cd~~~dC~d~sde  624 (652)
                      . ..|    .|..|.-.
T Consensus       439 ~-~~C----~C~~G~~G  450 (463)
T 2wg3_C          439 P-NKC----LCKKGYLG  450 (463)
T ss_dssp             -----------------
T ss_pred             C-CEE----ECCCCccc
Confidence            5 234    56655443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.81  E-value=1.7e-05  Score=83.11  Aligned_cols=91  Identities=7%  Similarity=0.099  Sum_probs=65.2

Q ss_pred             EEEEcCCCeEEEeec----------ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         319 LSYDYKRKTLFYSDI----------QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       319 v~~D~~~~~lywsd~----------~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      ++|++..+++|.+..          ..+.|..+++........+..-. |.+||+++.++.||.++.  ++|.++++...
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            678888899998754          13478888876543322233333 999999999999998885  89999987652


Q ss_pred             CCccEEEEEe-CCCCCceEEEEeCCCC
Q psy5768         389 KAQRIVVVRL-GQHDKPRGIDIDSCDS  414 (652)
Q Consensus       389 ~~~~~~~~~~-~~~~~P~~Iavdp~~g  414 (652)
                      .  .+.+-.+ .....|++|+++|..+
T Consensus       336 ~--l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 E--PKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             S--CEEEEEETTSCSSEEEEEECCCSC
T ss_pred             c--ceeeEEeccCCCCcEEEEecCCCC
Confidence            1  1455443 4568999999999644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.80  E-value=2.4e-06  Score=87.28  Aligned_cols=200  Identities=8%  Similarity=-0.033  Sum_probs=135.3

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeecc------CceeeeEEEccCCEEEEEeC-----------CC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ------GSVEGLAYEYVHNYLYWTCN-----------ND  377 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~------~~~~glAvDw~~~~LYwtd~-----------~~  377 (652)
                      .+..+++++..+.+|+++...+.|..+++........+...      ..|.++++++.++.||+++.           ..
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            36678899988899999988889999998654333222211      26889999999999999962           35


Q ss_pred             CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCce------------------
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTE------------------  439 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~------------------  439 (652)
                      +.|.++++.+.    +.+........|.+++++|...+||+++.     .|...++.+....                  
T Consensus       115 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  185 (337)
T 1pby_B          115 TRVALYDAETL----SRRKAFEAPRQITMLAWARDGSKLYGLGR-----DLHVMDPEAGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             CEEEEEETTTT----EEEEEEECCSSCCCEEECTTSSCEEEESS-----SEEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred             ceEEEEECCCC----cEEEEEeCCCCcceeEECCCCCEEEEeCC-----eEEEEECCCCcEeeeeeccccCCCceeCCCc
Confidence            78999998642    22222233567999999998888988731     2332222211000                  


Q ss_pred             ------------------------------------EEEE------------cCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         440 ------------------------------------SIIT------------TDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       440 ------------------------------------~l~~------------~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                                                          .++.            .....|.++++++.+++||.++   +.|
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~v  262 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE---SEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC---CeE
Confidence                                                0000            0112466799999999999984   789


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEec
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      ..++++.......+... ..|.++++.  +.+||.+. ..+.|...+..+++....+..
T Consensus       263 ~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~-~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          263 ESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGG-ALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEES-BSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEc-CCCcEEEEECcCCcEEEEEEc
Confidence            99998765544444433 578899886  45788874 467898899888877666653

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.79  E-value=1.9e-09  Score=76.92  Aligned_cols=36  Identities=36%  Similarity=0.728  Sum_probs=32.8

Q ss_pred             cccCCCceeec-----cCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCS-----DGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       591 ~~C~~~~f~C~-----~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ..|.+.+|+|.     ++.|||..|+|||..||.|||||..
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            46888999998     7899999999999999999999976

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.77  E-value=0.00018  Score=79.97  Aligned_cols=352  Identities=9%  Similarity=0.014  Sum_probs=197.1

Q ss_pred             EECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC---CCc
Q psy5768          45 VWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT---GQY  121 (652)
Q Consensus        45 ~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d---g~~  121 (652)
                      .|+ .+++|+++  ...++|..++.+.......+..+  ..|.    ++++++.++.+|.+. ..+.|.++|+.   ++.
T Consensus       163 ~d~-~~~~~V~~--~~~~~V~viD~~t~~v~~~i~~g--~~p~----~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~  232 (567)
T 1qks_A          163 WDL-ENLFSVTL--RDAGQIALIDGSTYEIKTVLDTG--YAVH----ISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTT  232 (567)
T ss_dssp             CCG-GGEEEEEE--TTTTEEEEEETTTCCEEEEEECS--SCEE----EEEECTTSCEEEEEE-TTSEEEEEETTSSSCCE
T ss_pred             cCC-CceEEEEe--CCCCeEEEEECCCCeEEEEEeCC--CCcc----ceEECCCCCEEEEEc-CCCeEEEEECCCCCCcE
Confidence            444 58999999  88899999998755433334444  2466    999999899999987 46799999994   443


Q ss_pred             EEEEEeCCCCCceeEEEc----CCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCC
Q psy5768         122 RYVLISGGVDQPSALAVD----PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       122 ~~~l~~~~~~~P~~iavd----~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      ...+.. + ..|++|+++    |...++|.++.. .+.|...+...-.....+...     +..+|            +.
T Consensus       233 v~~i~~-G-~~P~~ia~s~~~~pDGk~l~v~n~~-~~~v~ViD~~t~~~~~~i~~~-----~~~~~------------~~  292 (567)
T 1qks_A          233 VAEIKI-G-SEARSIETSKMEGWEDKYAIAGAYW-PPQYVIMDGETLEPKKIQSTR-----GMTYD------------EQ  292 (567)
T ss_dssp             EEEEEC-C-SEEEEEEECCSTTCTTTEEEEEEEE-TTEEEEEETTTCCEEEEEECC-----EECTT------------TC
T ss_pred             eEEEec-C-CCCceeEEccccCCCCCEEEEEEcc-CCeEEEEECCCCcEEEEEecc-----ccccc------------cc
Confidence            333332 2 479999999    567799999864 345655543222221111110     11111            00


Q ss_pred             cEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccccc
Q psy5768         198 NIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEY  277 (652)
Q Consensus       198 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~  277 (652)
                      ..+       ..+.+           ..|...+                                       ++      
T Consensus       293 ~~~-------p~~rv-----------a~i~~s~---------------------------------------~~------  309 (567)
T 1qks_A          293 EYH-------PEPRV-----------AAILASH---------------------------------------YR------  309 (567)
T ss_dssp             CEE-------SCCCE-----------EEEEECS---------------------------------------SS------
T ss_pred             ccc-------CCCce-----------EEEEEcC---------------------------------------CC------
Confidence            000       00000           0000000                                       00      


Q ss_pred             ceEEEEe--eecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeec-
Q psy5768         278 DAFIMYS--RVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLER-  354 (652)
Q Consensus       278 ~~~Ll~s--~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~-  354 (652)
                       +.++++  ....|..++..+...+.  +..+..   -..+..+.||+..+++|.++..+++|..+++........+.- 
T Consensus       310 -~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~---~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          310 -PEFIVNVKETGKILLVDYTDLNNLK--TTEISA---ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             -SEEEEEETTTTEEEEEETTCSSEEE--EEEEEC---CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             -CEEEEEecCCCeEEEEecCCCccce--eeeeec---cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence             000000  11223333331111000  011111   134567789998889999998899999998875433333322 


Q ss_pred             cCce---eeeE-EEccCCEEEEEeC-CCCeEEEEEcCCCCCc---cEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCC-
Q psy5768         355 QGSV---EGLA-YEYVHNYLYWTCN-NDATINKIDLDSPKAQ---RIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSH-  424 (652)
Q Consensus       355 ~~~~---~glA-vDw~~~~LYwtd~-~~~~I~~~~~~~~~~~---~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~-  424 (652)
                      -..|   .|.. +++..+.+|.|.. +.++|.+++.+..+..   .+.+-.+. ....+..|.++|...+||++..... 
T Consensus       384 g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          384 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCC
Confidence            2234   3665 4666778877664 4589999998752110   12222222 2345677999999899998774321 


Q ss_pred             ---CCceEEEeecC-----CCce-EEEEc--------CCCCCceEEEecCCCEEEEEeC----CCCeEEEEecCCCceEE
Q psy5768         425 ---LPSIQRAFFSG-----FGTE-SIITT--------DITMPNALALDHQAEKLFWGDA----RLDKIERCDYDGTNRIV  483 (652)
Q Consensus       425 ---~~~I~r~~ldG-----~~~~-~l~~~--------~l~~P~glaiD~~~~~LYw~D~----~~~~I~~~~ldG~~~~~  483 (652)
                         +..|...+++-     .... .++..        .-..|..+.++..+++||++..    ..+.|..+|......+.
T Consensus       464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  543 (567)
T 1qks_A          464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  543 (567)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             cccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence               12566665542     2332 22321        2346789999999999999854    35788887766544333


Q ss_pred             Eec-CCCCceeEE
Q psy5768         484 LSK-ISPLHPFDM  495 (652)
Q Consensus       484 l~~-~~~~~p~gl  495 (652)
                      .+. ..+..|-|.
T Consensus       544 ~i~~~~~~~P~g~  556 (567)
T 1qks_A          544 VIKDERLVTPTGK  556 (567)
T ss_dssp             EECCTTCCSEEEE
T ss_pred             EeCCCcccCCCee
Confidence            333 225677665

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.76  E-value=2.1e-09  Score=76.88  Aligned_cols=39  Identities=46%  Similarity=0.996  Sum_probs=35.2

Q ss_pred             cccCCCceeeccC-eecCCccCCCCCCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDEGILYCAM  631 (652)
Q Consensus       591 ~~C~~~~f~C~~g-~Ci~~~~~Cd~~~dC~d~sde~~~~C~~  631 (652)
                      ..|.+.+|+|.++ .||+..|+|||+.||.|||||..  |..
T Consensus         5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~--C~~   44 (48)
T 2i1p_A            5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG--CPT   44 (48)
T ss_dssp             CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS--SCS
T ss_pred             CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCccccc--CCC
Confidence            4688899999999 89999999999999999999986  743

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.75  E-value=2.4e-09  Score=101.15  Aligned_cols=49  Identities=31%  Similarity=0.621  Sum_probs=45.8

Q ss_pred             ccCCCceee--ccCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecC
Q psy5768         592 VCSEHDFKC--SDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCD  642 (652)
Q Consensus       592 ~C~~~~f~C--~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~  642 (652)
                      .|.+.+|+|  .+|+|||..|+|||.+||.|||||..  |..++|.+.+|+|.
T Consensus        54 ~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~--C~~~~C~~~~F~c~  104 (215)
T 2gtl_O           54 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD--CTLPTKAGDKFIGD  104 (215)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC--CCCSSCTTCEEEEE
T ss_pred             CCCCcceeeCCCCCcCccccccCCCCCcCCCcccccC--CCCCCcCCCceeee
Confidence            588899999  78999999999999999999999976  98889999999994

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.74  E-value=8e-06  Score=85.85  Aligned_cols=301  Identities=10%  Similarity=0.035  Sum_probs=170.5

Q ss_pred             EEEECCCCEEEEEeccCC----cceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeC---------CC
Q psy5768          43 IAVWPVKGKMFWSNVTKQ----VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDP---------KE  109 (652)
Q Consensus        43 v~~d~~~~~lyw~d~~~~----~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~---------~~  109 (652)
                      +.-.|..+++|++|  ..    .++|+.++.+-.....-+..+ ..     | +|++++.++.||+++.         ..
T Consensus        38 ~~~~pd~~~vyV~~--~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~-----P-~va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVND--PAHFAAVTQQFVIDGEAGRVIGMIDGG-FL-----P-NPVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEE--CGGGCSSEEEEEEETTTTEEEEEEEEC-SS-----C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEc--CcccCCCCEEEEEECCCCeEEEEEECC-CC-----C-cEEECCCCCEEEEEcccccccccCCCC
Confidence            44568899999999  54    568888887644322234444 22     3 6999999999999984         24


Q ss_pred             CEEEEEEcCCCcE-EEEEeCC------CCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec---ccCcee
Q psy5768         110 NVIEVARLTGQYR-YVLISGG------VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI---IMPIKD  179 (652)
Q Consensus       110 ~~I~v~~~dg~~~-~~l~~~~------~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~---~~~p~g  179 (652)
                      +.|.++|...... ..+.-..      ...|+.++++|...+||.++......|...++.......-+...   ...|.|
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g  188 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA  188 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCC
Confidence            6799998875432 3332111      24799999999988999998643457877776544332222111   112333


Q ss_pred             ----EEEeccCCEEEEEeCCC-CcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceec
Q psy5768         180 ----ITLDLKFFSAFYRNLSK-GNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYN  254 (652)
Q Consensus       180 ----l~lD~~~~~ly~~d~~g-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~  254 (652)
                          +++.. ++++.++++.. ++.  +.           .+.         ++++..+    .|... |.      .  
T Consensus       189 ~~~~~~~~~-DG~~~~v~~~~~g~v--~~-----------~~~---------~~~~~~~----~~~~~-~~------~--  232 (386)
T 3sjl_D          189 PDTFFMHCR-DGSLAKVAFGTEGTP--EI-----------THT---------EVFHPED----EFLIN-HP------A--  232 (386)
T ss_dssp             TTEEEEEET-TSCEEEEECCSSSCC--EE-----------EEC---------CCCSCTT----SCBCS-CC------E--
T ss_pred             CceeEEECC-CCCEEEEECCCCCeE--EE-----------eec---------ceecccc----ccccc-cc------e--
Confidence                13333 23333333332 111  00           000         1111110    01110 00      0  


Q ss_pred             CCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeee---e---cccc--ceEEEEEEEcCCC
Q psy5768         255 GVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR---N---STMM--KNIIELSYDYKRK  326 (652)
Q Consensus       255 ~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~---~---~~~~--~~~~~v~~D~~~~  326 (652)
                                 |...+|       .+++.+....+..+++ ...... .+..+.   .   ..+.  .....+++|...+
T Consensus       233 -----------~~~~dG-------~~~~vs~~g~V~v~d~-~~~~~~-v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~  292 (386)
T 3sjl_D          233 -----------YSQKAG-------RLVWPTYTGKIHQIDL-SSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRALD  292 (386)
T ss_dssp             -----------EETTTT-------EEEEEBTTSEEEEEEC-TTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             -----------eEcCCC-------cEEEEeCCCEEEEEEC-CCCcce-eecceeccccccccccccCCCcceeeECCCCC
Confidence                       000122       2344455556666666 222110 111111   0   0000  0112366799999


Q ss_pred             eEEEeec---------ccccEEEEeccCCcceEEeeccCceeeeEEEccCC-EEEEEeCCCCeEEEEEcCCCCCccEEEE
Q psy5768         327 TLFYSDI---------QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHN-YLYWTCNNDATINKIDLDSPKAQRIVVV  396 (652)
Q Consensus       327 ~lywsd~---------~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~-~LYwtd~~~~~I~~~~~~~~~~~~~~~~  396 (652)
                      +||++..         ..++|..+++.......-+.--..|.+|+++..++ .||.++...+.|.+++...    .+.+-
T Consensus       293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t----~k~~~  368 (386)
T 3sjl_D          293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES----GEELR  368 (386)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT----CCEEE
T ss_pred             eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC----CcEEE
Confidence            9999864         23679999886543332222223788999999987 7898899899999999864    34556


Q ss_pred             EeCCCCCceEEEEeCC
Q psy5768         397 RLGQHDKPRGIDIDSC  412 (652)
Q Consensus       397 ~~~~~~~P~~Iavdp~  412 (652)
                      ......+|..|++.+.
T Consensus       369 ~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          369 SVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EECCCCSSCCEEEECC
T ss_pred             EecCCCCCceeEECCc
Confidence            6677899999998774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.73  E-value=3.1e-07  Score=99.53  Aligned_cols=156  Identities=16%  Similarity=0.255  Sum_probs=113.1

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe--e-------ccCceeeeEEEcc---CCEEEEEeCC--
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL--E-------RQGSVEGLAYEYV---HNYLYWTCNN--  376 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~-------~~~~~~glAvDw~---~~~LYwtd~~--  376 (652)
                      ..+..+.+|++++. ++||+++...++|+++...+...+.+.  .       +...+.|||+++.   ++.||++++.  
T Consensus        24 ~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           24 SNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            45678999999986 579999988778999986432233332  1       3456779999987   8999999863  


Q ss_pred             ----------CCeEEEEEcCCCCCc---cEEEEE-e--CCCCCceEEEEeCCCCEEEEEecCC-----------------
Q psy5768         377 ----------DATINKIDLDSPKAQ---RIVVVR-L--GQHDKPRGIDIDSCDSRIYWTNWNS-----------------  423 (652)
Q Consensus       377 ----------~~~I~~~~~~~~~~~---~~~~~~-~--~~~~~P~~Iavdp~~g~Lywtd~~~-----------------  423 (652)
                                ..+|.++.++.....   .++++. +  .....+.+|+++| .|+||++....                 
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~  181 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHT  181 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccc
Confidence                      357888887543211   234442 2  2346799999999 68999995431                 


Q ss_pred             -------------CCCceEEEeecCCC----------ceEEEEcCCCCCceEEEecCCCEEEEEeCCCC
Q psy5768         424 -------------HLPSIQRAFFSGFG----------TESIITTDITMPNALALDHQAEKLFWGDARLD  469 (652)
Q Consensus       424 -------------~~~~I~r~~ldG~~----------~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~  469 (652)
                                   ..++|.|.+.||+-          +..++...++.|.||++|. +++||.+|.+.+
T Consensus       182 p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~  249 (454)
T 1cru_A          182 PTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (454)
T ss_dssp             CCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             cccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCC
Confidence                         13689999999982          2346667889999999998 699999997544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.70  E-value=6.2e-06  Score=86.55  Aligned_cols=275  Identities=6%  Similarity=-0.071  Sum_probs=155.2

Q ss_pred             cCCcEEEEeCCCC----EEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC-------C-CCeEEEEeCCCCC
Q psy5768          98 IAQNIYWSDPKEN----VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-------K-IPLIARAGLDGKK  165 (652)
Q Consensus        98 ~~~~lY~~d~~~~----~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~-------~-~~~I~~~~ldg~~  165 (652)
                      ...++|+++...+    .|.++|++.....--+..+ ..| +++++|..++||.++++       + ...|...++....
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            4578999998777    8889998765443333333 468 99999999999999842       1 2457777765433


Q ss_pred             cEEEEeec-------ccCceeEEEeccCCEEEEEeCCCCcEEEE-EecCCCCceEEEeecCCCCCcceeeeeeeccCCCC
Q psy5768         166 QTILAQEI-------IMPIKDITLDLKFFSAFYRNLSKGNIHII-SLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT  237 (652)
Q Consensus       166 ~~~~~~~~-------~~~p~gl~lD~~~~~ly~~d~~g~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~  237 (652)
                      ..--+.-.       ...|.+|++++.+++||+.++...+.-.+ +.+..+ ...  + + .                  
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~--i-~-v------------------  164 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQL--T-K-S------------------  164 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEE--E-E-C------------------
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceE--E-E-C------------------
Confidence            32222111       24699999999999999998753332222 011111 111  0 0 0                  


Q ss_pred             CCCCCCCCCCcccceecCC-CceEEEeCCcc-----cc----CCCc---------------cccc-ceEEEEeeecceeE
Q psy5768         238 NPCGVNNGGCAELCLYNGV-SAVCACAHGVV-----AQ----DGKS---------------CSEY-DAFIMYSRVNRIDS  291 (652)
Q Consensus       238 n~C~~~ng~Cs~lC~~~~~-~~~C~C~~G~l-----~~----dg~~---------------C~~~-~~~Ll~s~~~~i~~  291 (652)
                             ++|.|+- ..+. .|...|+.|.+     ..    +++-               .... ..+++.+. +.+..
T Consensus       165 -------~~~~~~~-p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~v  235 (368)
T 1mda_H          165 -------ASCFHIH-PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQ  235 (368)
T ss_dssp             -------SSCCCCE-EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEE
T ss_pred             -------CCceEEc-cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEE
Confidence                   1122210 0000 12222222210     00    0000               0111 12333344 67777


Q ss_pred             EecCCCCCCCCCceeeeec-----cccceEEE---EEEEcCCCeEEEeec---c-----cccEEEEeccCCcceEEeecc
Q psy5768         292 IHMTDKSDLNSPFESIRNS-----TMMKNIIE---LSYDYKRKTLFYSDI---Q-----KGTINSVFFNGSNHRVLLERQ  355 (652)
Q Consensus       292 i~l~~~~~~~~p~~~~~~~-----~~~~~~~~---v~~D~~~~~lywsd~---~-----~~~I~~~~~~g~~~~~i~~~~  355 (652)
                      +++. ..... .+..+...     .....+.+   +++++..+++|++..   .     .+.+..+++.......-+..-
T Consensus       236 iD~~-~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg  313 (368)
T 1mda_H          236 GDIP-AAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG  313 (368)
T ss_dssp             EECC-SSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE
T ss_pred             EECC-CCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC
Confidence            7762 21100 00111000     00012223   678999999999864   2     244557776543222222222


Q ss_pred             CceeeeEEEccCCEEEEEeC-CCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCC
Q psy5768         356 GSVEGLAYEYVHNYLYWTCN-NDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSC  412 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~  412 (652)
                      ..|.||++++.++.||++.. ..+.|.++++..    .+.+-.......|.+|++++.
T Consensus       314 ~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t----~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS----DQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSS----CEEEEECCCCSCCCEEECCCC
T ss_pred             CCcceEEECCCCCEEEEEccCCCCeEEEEECCC----CcEEEEEECCCCCCEEEeecC
Confidence            37999999999999999998 689999999875    466666777899999999874

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.69  E-value=3.4e-09  Score=75.63  Aligned_cols=36  Identities=36%  Similarity=0.743  Sum_probs=33.0

Q ss_pred             cccCCCceeec-----cCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCS-----DGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       591 ~~C~~~~f~C~-----~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ..|.+.+|+|.     ++.|||..|+|||+.||.|||||..
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            46888999998     6799999999999999999999975

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.68  E-value=5.7e-09  Score=98.60  Aligned_cols=60  Identities=25%  Similarity=0.428  Sum_probs=48.9

Q ss_pred             ccccCCCceeecc--CeecCCccCCCCCCCCCCCCCCCCCCCCCC-CCCCCeeec--CCCCcccC
Q psy5768         590 NTVCSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDEGILYCAMR-DCRPGYFKC--DNNKCILS  649 (652)
Q Consensus       590 ~~~C~~~~f~C~~--g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~-~C~~~~f~C--~~~~Ci~~  649 (652)
                      ...|.+.+|+|.+  |.||+..|.|||++||.|||||....|... .|...+|.+  .++.|...
T Consensus        51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g~~~~~~C~~~  115 (217)
T 2gtl_M           51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDL  115 (217)
T ss_dssp             CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEEEEEESSSCSC
T ss_pred             CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCCcccCCcccccccCcccCCCC
Confidence            4579999999975  899999999999999999999984458776 666666665  56788654

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.66  E-value=5.9e-09  Score=80.85  Aligned_cols=45  Identities=29%  Similarity=0.637  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCcccceecCC-CceEEEeCCc-cccCCCcccccceE
Q psy5768         236 GTNPCGVNNGGCAELCLYNGV-SAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~-~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      ++|+|..+||+|+|+|+..++ +|+|.|+.|| |..|+++|.+..+|
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccc
Confidence            579999999999999998887 7999999998 67899999876554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=1.5e-06  Score=85.85  Aligned_cols=182  Identities=14%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             EEEEeeec----ceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeecc
Q psy5768         280 FIMYSRVN----RIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ  355 (652)
Q Consensus       280 ~Ll~s~~~----~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~  355 (652)
                      .|+.+++.    .|+.+++..+ .   ....+..+. -....+++++  .++||.++...+.++.++.+......-+.- 
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tg-k---v~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-  125 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESG-K---TLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-  125 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTC-C---EEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC-
T ss_pred             EEEEECCCCCCceEEEEECCCC-c---EEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC-
Confidence            57777754    6888887333 2   112232211 1224567766  679999999999999999865332222222 


Q ss_pred             CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCC----CCCceEEEEeCCCCEEEEEecCCCCCceEEE
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQ----HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRA  431 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~----~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~  431 (652)
                       .++|.++.+.++.||.+|. .++|.+++.....  ....+....    ...+..+...  .|.||...|..+  .|.+.
T Consensus       126 -~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~--~I~vI  197 (262)
T 3nol_A          126 -DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTN--KIVRI  197 (262)
T ss_dssp             -SSCCCCEEECSSCEEECCS-SSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSS--EEEEE
T ss_pred             -CCCceEEecCCCEEEEECC-CCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCC--eEEEE
Confidence             2355555566899999996 7899999976543  122222211    1333445554  789999999865  78887


Q ss_pred             eecCCCceEEEEc-C-----------CCCCceEEEecCCCEEEEEeCCCCeEEEEecC
Q psy5768         432 FFSGFGTESIITT-D-----------ITMPNALALDHQAEKLFWGDARLDKIERCDYD  477 (652)
Q Consensus       432 ~ldG~~~~~l~~~-~-----------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld  477 (652)
                      +.........+.. .           ..-|||||+|+.+++||++-..-.+++.+.+.
T Consensus       198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            7654433333322 1           23579999999999999999888888887764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.61  E-value=5.2e-06  Score=87.17  Aligned_cols=214  Identities=6%  Similarity=-0.063  Sum_probs=135.7

Q ss_pred             eEEEEEEEcCCCeEEEeec---------ccccEEEEeccCCcc-eEEeec-------cCceeeeEEEccCCEEEEEeCC-
Q psy5768         315 NIIELSYDYKRKTLFYSDI---------QKGTINSVFFNGSNH-RVLLER-------QGSVEGLAYEYVHNYLYWTCNN-  376 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~---------~~~~I~~~~~~g~~~-~~i~~~-------~~~~~glAvDw~~~~LYwtd~~-  376 (652)
                      .+ ++.+++..++||+++.         ..+.|..+++..... ..+--+       ...|.+|++++.++.||.++.. 
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~  145 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence            35 8999999999999983         467899998765332 233222       2479999999999999999875 


Q ss_pred             CCeEEE--EEcCCC-----------------------CCccEEEEEeCC------------------CCCceEEEEeCCC
Q psy5768         377 DATINK--IDLDSP-----------------------KAQRIVVVRLGQ------------------HDKPRGIDIDSCD  413 (652)
Q Consensus       377 ~~~I~~--~~~~~~-----------------------~~~~~~~~~~~~------------------~~~P~~Iavdp~~  413 (652)
                      .+.+.+  +++...                       ..+...++....                  ...|.  + .+..
T Consensus       146 ~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~  222 (368)
T 1mda_H          146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYP  222 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTT
T ss_pred             CCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccC
Confidence            466776  554210                       000001111110                  12343  3 4555


Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCC---------CCCce---EEEecCCCEEEEEeC---C-----CCeEEE
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDI---------TMPNA---LALDHQAEKLFWGDA---R-----LDKIER  473 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l---------~~P~g---laiD~~~~~LYw~D~---~-----~~~I~~  473 (652)
                      +.+||+..    ..+...++.+...+++....+         ..|.|   ++++.++++||++..   +     .+.+..
T Consensus       223 ~~~~~vs~----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          223 GMLVWAVA----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TEEEECBS----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             CEEEEEcC----CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence            66677665    267667766544333222111         13556   899999999999854   3     245557


Q ss_pred             EecCCCceEEEecCCCCceeEEEEe--CCEEEEEcC-CCCeEEEEEccCCceEEEEecccCCcceeEE
Q psy5768         474 CDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDW-VIHAVLRANKYTGEEVYTLRKNIRRPMGIVA  538 (652)
Q Consensus       474 ~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~-~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~  538 (652)
                      +|+....+..-+..+ ..|.+|++.  +.++|++.. ..+.|..+|..+++.++.+..+ ..|.+|.+
T Consensus       299 iD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~  364 (368)
T 1mda_H          299 VTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSV  364 (368)
T ss_dssp             EESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEEC
T ss_pred             EECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEEe
Confidence            777654433222222 479999997  347999988 7999999999998877777643 46777643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=3.8e-05  Score=75.10  Aligned_cols=188  Identities=14%  Similarity=0.020  Sum_probs=123.6

Q ss_pred             eEEEEEEEcCCCeEEEeecc--cccEEEEeccCCcceEEeeccCce--eeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQ--KGTINSVFFNGSNHRVLLERQGSV--EGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~--~~~I~~~~~~g~~~~~i~~~~~~~--~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      ...|+.||.  ++||.+...  ..+|.++++.......-+.--..+  +||+++  ++.||......+.+.+++....  
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl--   95 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL--   95 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT--
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC--
Confidence            356899986  789999765  358999998754332222222234  566665  8999999999999999998653  


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----CCCCCceEEEecCCCEEEEEe
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----DITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~P~glaiD~~~~~LYw~D  465 (652)
                        +.+-.......+.+|+  +..+.||.+|. +  .+|...+...-....-+..     .+..+|.|..  .+++||...
T Consensus        96 --~~~~ti~~~~~Gwglt--~dg~~L~vSdg-s--~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanv  166 (243)
T 3mbr_X           96 --TPRARFRYPGEGWALT--SDDSHLYMSDG-T--AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--VNGELLANV  166 (243)
T ss_dssp             --EEEEEEECSSCCCEEE--ECSSCEEEECS-S--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEE
T ss_pred             --cEEEEEeCCCCceEEe--eCCCEEEEECC-C--CeEEEEeCCCCeEEEEEEEccCCcccccceeeEE--eCCEEEEEE
Confidence              3333333334566666  44689999994 3  3776665443332221221     1334555554  489999888


Q ss_pred             CCCCeEEEEecCCCceEEEec-C------------CCCceeEEEEe--CCEEEEEcCCCCeEEEEEc
Q psy5768         466 ARLDKIERCDYDGTNRIVLSK-I------------SPLHPFDMAVY--GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       466 ~~~~~I~~~~ldG~~~~~l~~-~------------~~~~p~glav~--~~~lYwtd~~~~~I~~~~k  517 (652)
                      ...+.|.++|.........+. .            ...-|.|||++  +++||+|.-.=..++++..
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence            889999999986544333322 1            12368999998  5799999877778877654

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=98.59  E-value=1.3e-08  Score=81.40  Aligned_cols=51  Identities=33%  Similarity=0.710  Sum_probs=42.9

Q ss_pred             eccCceeeccC-CcccCcccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         573 SCFTGKVLMED-NRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       573 ~Cp~g~~l~~d-~~C~~~~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      .|++|    +| ..|..  ..|.+.+|+|.+|.|||..|+|||..||.|||||....|
T Consensus        27 DC~Dg----SDE~~C~~--~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~C   78 (80)
T 2fcw_B           27 DCLDG----SDEASCPV--LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC   78 (80)
T ss_dssp             CSTTC----TTTTTHHH--HHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             cCCCc----cccccccc--ccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcccC
Confidence            57777    56 66753  468899999999999999999999999999999965446

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.58  E-value=0.0011  Score=79.48  Aligned_cols=408  Identities=11%  Similarity=0.037  Sum_probs=220.5

Q ss_pred             CeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEecc---CCcceEEEEEcCCCccEEEEeCCCcCCc-
Q psy5768          11 SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT---KQVVTIEMAFMDGTKRETVVSQKKYPAV-   86 (652)
Q Consensus        11 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~---~~~~~I~~~~~dgs~~~~v~~~~~~~~p-   86 (652)
                      +.|++++++|.....+...       -..+..++++|.+.+|.|+...   .+...|+.+++++.....+ +.. -... 
T Consensus        33 ~~l~~~~~~gg~~~~lt~~-------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~l-t~~-~~~~~  103 (1045)
T 1k32_A           33 DDLWEHDLKSGSTRKIVSN-------LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI-TYF-SGKST  103 (1045)
T ss_dssp             TEEEEEETTTCCEEEEECS-------SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC-CCC-CEEEE
T ss_pred             CcEEEEECCCCcEEEeeeC-------CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEc-ccC-CCccc
Confidence            6899999998777666642       2467899999999999987511   1345899999988754443 222 1112 


Q ss_pred             ------cCCCCcEEEEccCCcEEEEeC------CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEe-----
Q psy5768          87 ------TACNLHIAVDWIAQNIYWSDP------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE-----  149 (652)
Q Consensus        87 ------~~~~~~lavDw~~~~lY~~d~------~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd-----  149 (652)
                            .    ++++.+.++ |+++..      ....|.+.++++...+.+...   ....+++.|  |.+|...     
T Consensus       104 ~~~~~~~----~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~~~sp--G~l~~~~~~~~~  173 (1045)
T 1k32_A          104 GRRMFTD----VAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHILFAD--GRRVIGRNTFEL  173 (1045)
T ss_dssp             TTEECSE----EEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEEEEET--TEEEEEESCSCC
T ss_pred             ccccccc----cccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCC---CcceeeeCC--CEEEEeccCCCc
Confidence                  4    566665555 666544      235788888887655444332   234566777  5554432     


Q ss_pred             --c-----CCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecC-CCCceEEEeecCCCC
Q psy5768         150 --S-----GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSN-LSDVSTISMKPYGDS  221 (652)
Q Consensus       150 --~-----~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~-~~~~~~~~~~~~~~~  221 (652)
                        |     +....|+..... .....+ ...-.....++.+..  +||++....+..+....+. +.....  +..    
T Consensus       174 ~~~~~~~g~~~~~lw~~~~~-~~~~~l-~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~--l~~----  243 (1045)
T 1k32_A          174 PHWKGYRGGTRGKIWIEVNS-GAFKKI-VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRK--HTS----  243 (1045)
T ss_dssp             TTSTTCCSTTCCEEEEEEET-TEEEEE-ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEE--CCC----
T ss_pred             cccccccCCCcCCEEEECCC-CCeEEC-cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceE--ecC----
Confidence              1     123355554333 222222 221233444555432  5555432222222211110 000000  000    


Q ss_pred             CcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCC
Q psy5768         222 YLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN  301 (652)
Q Consensus       222 ~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~  301 (652)
                                             +. ..       .....-|.|             ..|+++....|+.+++ ....+ 
T Consensus       244 -----------------------~~-~~-------~~~~~SpDG-------------~~la~~~~~~i~~~d~-~~~~l-  277 (1045)
T 1k32_A          244 -----------------------FT-DY-------YPRHLNTDG-------------RRILFSKGGSIYIFNP-DTEKI-  277 (1045)
T ss_dssp             -----------------------CC-SS-------CEEEEEESS-------------SCEEEEETTEEEEECT-TTCCE-
T ss_pred             -----------------------CC-Cc-------ceeeEcCCC-------------CEEEEEeCCEEEEecC-CceEe-
Confidence                                   00 00       000111122             1233333344444443 11110 


Q ss_pred             CCceeeeec---------cccceEEEEEEE-cCCCeEEEeecccccEEEEeccCCcceEEeeccC-ceeeeEEEccCCEE
Q psy5768         302 SPFESIRNS---------TMMKNIIELSYD-YKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQG-SVEGLAYEYVHNYL  370 (652)
Q Consensus       302 ~p~~~~~~~---------~~~~~~~~v~~D-~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~-~~~glAvDw~~~~L  370 (652)
                         ..+...         .....+.++++. +..++|.++.  .+.|+.+++.+.....+..... .+.++++. .++.|
T Consensus       278 ---~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          278 ---EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             ---EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEE
T ss_pred             ---eeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeE
Confidence               001000         001124567788 7777777765  4677777776544333322222 45566665 56677


Q ss_pred             EEEeCCCCeEE-EEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCC
Q psy5768         371 YWTCNNDATIN-KIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMP  449 (652)
Q Consensus       371 Ywtd~~~~~I~-~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P  449 (652)
                      +++.. ...++ +.++.+..  ... +. .....+..++++|...+|+++...   ..|...++++.....+........
T Consensus       352 ~~~s~-~~~l~~~~d~~~~~--~~~-l~-~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~~~~~~~~~~~~v  423 (1045)
T 1k32_A          352 IHGTR-EGDFLGIYDYRTGK--AEK-FE-ENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVIERSREAMI  423 (1045)
T ss_dssp             EEEET-TEEEEEEEETTTCC--EEE-CC-CCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEECSSSCC
T ss_pred             EEEEC-CCceEEEEECCCCC--ceE-ec-CCccceeeeEECCCCCEEEEECCC---CeEEEEECCCCceEEeccCCCCCc
Confidence            77665 56788 78876532  222 22 344678899999988888877643   378888887666655554333445


Q ss_pred             ceEEEecCCCEEEEEeCC---------CCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCC
Q psy5768         450 NALALDHQAEKLFWGDAR---------LDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWV  508 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~~---------~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~  508 (652)
                      .++++.+++++|.++...         ...|...++++.....+.. ....+.++++.  +.+|||....
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~-~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESC
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC-CCcccCCceEcCCCCEEEEEecc
Confidence            789999999999887542         2579999998765444333 23456677765  5588887643

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.58  E-value=1.5e-08  Score=78.55  Aligned_cols=41  Identities=24%  Similarity=0.568  Sum_probs=37.4

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      .++|..+||+|+|+|+.+++++|+|+|+.||.|..| ++|.+
T Consensus         5 ~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L            5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             CCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             cccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            588999999999999998876799999999999999 89986

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.57  E-value=2.5e-05  Score=77.10  Aligned_cols=186  Identities=13%  Similarity=0.049  Sum_probs=121.9

Q ss_pred             EEEEEEEcCCCeEEEeeccc--ccEEEEeccCCcceEEeeccCce--eeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         316 IIELSYDYKRKTLFYSDIQK--GTINSVFFNGSNHRVLLERQGSV--EGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~--~~I~~~~~~g~~~~~i~~~~~~~--~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      ..++.|+  +++||.+....  .+|.++++.......-+.--..+  +||+++  ++.||.+....+.+.+++....+  
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--  118 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--  118 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC--
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc--
Confidence            4688998  57999998654  48999998754332222211233  667776  89999999999999999987643  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----CCCCCceEEEecCCCEEEEEeC
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----DITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~P~glaiD~~~~~LYw~D~  466 (652)
                        .+-.......+.+++-  ..+.||.+|. +  .+|...+........-+..     .+..+|.|...  +++||....
T Consensus       119 --~~~ti~~~~eG~glt~--dg~~L~~SdG-s--~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w  189 (262)
T 3nol_A          119 --QVRSFNYDGEGWGLTH--NDQYLIMSDG-T--PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVW  189 (262)
T ss_dssp             --EEEEEECSSCCCCEEE--CSSCEEECCS-S--SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEET
T ss_pred             --EEEEEECCCCceEEec--CCCEEEEECC-C--CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEc
Confidence              2222222335556664  4688999984 3  3777665543322111111     23455666654  789999998


Q ss_pred             CCCeEEEEecCCCceEEEecC-C-----------CCceeEEEEe--CCEEEEEcCCCCeEEEEE
Q psy5768         467 RLDKIERCDYDGTNRIVLSKI-S-----------PLHPFDMAVY--GEFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       467 ~~~~I~~~~ldG~~~~~l~~~-~-----------~~~p~glav~--~~~lYwtd~~~~~I~~~~  516 (652)
                      ..+.|.++|.........+.. .           ..-|.|||+.  ++.||+|.-.=..++++.
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~  253 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT  253 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence            899999999865443333322 1           2367999998  579999987777887764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.55  E-value=2.5e-06  Score=87.02  Aligned_cols=158  Identities=15%  Similarity=0.007  Sum_probs=110.9

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc---CCccCCCCcEEE---EccCCcEEE-EeC-
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY---PAVTACNLHIAV---DWIAQNIYW-SDP-  107 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~---~~p~~~~~~lav---Dw~~~~lY~-~d~-  107 (652)
                      .--.|.+++||..++++|+++  .-.++|.++++++...+.+.-.+ +   ..+.-.|.||.+   |.. ++|++ ++. 
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~--l~~g~V~~~~~~~~~~~~~~~~~-~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~   86 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSN--LYKGRIEVYNPKTQSHFNVVIDG-ASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA   86 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEE--TTTTEEEEECTTTCCEEEECCTT-TCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred             cccCCcCccCcCCCCEEEEEe--ccCCEEEEEcCCCCeEEEEecCC-ccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence            345788999999999999999  88899999999865444442222 2   122222339999   665 77877 552 


Q ss_pred             -----------CCCEEEEEEcC----CCcEEEE-EeC-----------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768         108 -----------KENVIEVARLT----GQYRYVL-ISG-----------GVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus       108 -----------~~~~I~v~~~d----g~~~~~l-~~~-----------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                                 ....+.+.+++    |+....+ +..           ....|.++++|+ .|..|+|+....+.|.|.+
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe
Confidence                       35779999998    5433222 111           122488999998 8999999975327999999


Q ss_pred             CCCCCcEEEEeec-----ccCceeEEEeccCCEEEEEeCCCCcE
Q psy5768         161 LDGKKQTILAQEI-----IMPIKDITLDLKFFSAFYRNLSKGNI  199 (652)
Q Consensus       161 ldg~~~~~~~~~~-----~~~p~gl~lD~~~~~ly~~d~~g~~~  199 (652)
                      .||+....+....     ..-++||++++.+.+|+..+. ++..
T Consensus       166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L  208 (334)
T 2p9w_A          166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRAL  208 (334)
T ss_dssp             TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSE
T ss_pred             CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeE
Confidence            9999666554322     223789999999989988877 4544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=3.5e-06  Score=83.18  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=108.5

Q ss_pred             eeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC
Q psy5768         358 VEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG  437 (652)
Q Consensus       358 ~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~  437 (652)
                      ..||+++  ++.||.+....++|.++++...+. .+.+  +.......||+++  .+.||.++|...  .+...+.+.  
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~--~v~V~D~~T--  125 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQP-VWME--RLGNIFAEGLASD--GERLYQLTWTEG--LLFTWSGMP--  125 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSC-SEEE--ECTTCCEEEEEEC--SSCEEEEESSSC--EEEEEETTT--
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcE-EeEE--CCCCcceeEEEEe--CCEEEEEEccCC--EEEEEECCc--
Confidence            4799998  689999999999999998865432 2333  2322223446665  579999999754  777766543  


Q ss_pred             ceEEEEcCC-CCCceEEEecCCCEEEEEeCCCCeEEEEecCCCce-EEEecCC----CCceeEEEEeCCEEEEEcCCCCe
Q psy5768         438 TESIITTDI-TMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR-IVLSKIS----PLHPFDMAVYGEFIFWTDWVIHA  511 (652)
Q Consensus       438 ~~~l~~~~l-~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~-~~l~~~~----~~~p~glav~~~~lYwtd~~~~~  511 (652)
                      .+.+-+-.. ..+.||+-|  +++||.+| +.++|..+|...... ..+....    ...+-.|...++.||...|.++.
T Consensus       126 l~~~~ti~~~~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~  202 (268)
T 3nok_A          126 PQRERTTRYSGEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSD  202 (268)
T ss_dssp             TEEEEEEECSSCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSE
T ss_pred             CcEEEEEeCCCceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCe
Confidence            333322221 234466655  89999999 588999999876432 2222111    23445677778999999999999


Q ss_pred             EEEEEccCCceEEEEecc
Q psy5768         512 VLRANKYTGEEVYTLRKN  529 (652)
Q Consensus       512 I~~~~k~~g~~~~~~~~~  529 (652)
                      |.++|..+|+...++...
T Consensus       203 I~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             EEEECTTTCBEEEEEECH
T ss_pred             EEEEeCCCCcEEEEEECC
Confidence            999999999988887643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.54  E-value=5.8e-06  Score=86.02  Aligned_cols=177  Identities=11%  Similarity=0.059  Sum_probs=112.1

Q ss_pred             CCCeEEEEecCCC--eeEEEecCCCCCCCCCCCeeEEEEECC---CCEEEEEeccCCcceE--EEEEcCCCccEEEEeC-
Q psy5768           9 TQSKIVVCNLEGE--YQTTILSNESNDTSTLSKISSIAVWPV---KGKMFWSNVTKQVVTI--EMAFMDGTKRETVVSQ-   80 (652)
Q Consensus         9 ~~~~I~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~v~~d~~---~~~lyw~d~~~~~~~I--~~~~~dgs~~~~v~~~-   80 (652)
                      ..+.|+++|++..  ....+.-...+....-=+|+||++...   +.+||+.|-.....+|  .+...++.. .+++.+ 
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence            4788999998732  223332111000111238999999762   3479999922224454  455555443 333322 


Q ss_pred             --CCcCCccCCCCcEEEEccCCcEEEEeC-----------------CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCC
Q psy5768          81 --KKYPAVTACNLHIAVDWIAQNIYWSDP-----------------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPE  141 (652)
Q Consensus        81 --~~~~~p~~~~~~lavDw~~~~lY~~d~-----------------~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~  141 (652)
                        ..+..|+    ++++|. .+.+|+++.                 ..+.+.+++.+ + .+++. .++..|.+||++|.
T Consensus       160 ~g~~~~~pN----D~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~-~~~~~-~~l~~pNGia~spD  231 (355)
T 3sre_A          160 RHKLLPSVN----DIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-D-VRVVA-EGFDFANGINISPD  231 (355)
T ss_dssp             CCTTCSSEE----EEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-C-CEEEE-EEESSEEEEEECTT
T ss_pred             ccCCCCCCc----eEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-e-EEEee-cCCcccCcceECCC
Confidence              2367789    999996 677777754                 24678888773 3 44444 45899999999998


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCCCcE---EEEeecccCceeEEEeccCCEEEEEe-CCC
Q psy5768         142 SGYLFWSESGKIPLIARAGLDGKKQT---ILAQEIIMPIKDITLDLKFFSAFYRN-LSK  196 (652)
Q Consensus       142 ~g~lywtd~~~~~~I~~~~ldg~~~~---~~~~~~~~~p~gl~lD~~~~~ly~~d-~~g  196 (652)
                      ..+||++|.. ..+|++..+++....   ..+. --..|.|+++|..++.||+.. .+|
T Consensus       232 g~~lYvadt~-~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g  288 (355)
T 3sre_A          232 GKYVYIAELL-AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNG  288 (355)
T ss_dssp             SSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCH
T ss_pred             CCEEEEEeCC-CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCc
Confidence            8899999986 568999998743221   1222 246899999998667887744 443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=4e-05  Score=75.61  Aligned_cols=186  Identities=13%  Similarity=0.068  Sum_probs=125.0

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCc-ceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV  394 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~-~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~  394 (652)
                      ..|+.|+  .++||.+....++|.++++.... ...++..-.-.+||+++  ++.||.+....+.+.+++....    +.
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl----~~  128 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP----QR  128 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT----EE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcC----cE
Confidence            3688888  58999999988889999876433 33333222233667775  7899999999999999998653    33


Q ss_pred             EEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE--c---CCCCCceEEEecCCCEEEEEeCCCC
Q psy5768         395 VVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT--T---DITMPNALALDHQAEKLFWGDARLD  469 (652)
Q Consensus       395 ~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~--~---~l~~P~glaiD~~~~~LYw~D~~~~  469 (652)
                      +-.......+.+++-|  .+.||.+| ++  .+|...+........-+.  .   .+..+|.|...  +++||......+
T Consensus       129 ~~ti~~~~eGwGLt~D--g~~L~vSd-Gs--~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~  201 (268)
T 3nok_A          129 ERTTRYSGEGWGLCYW--NGKLVRSD-GG--TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSS  201 (268)
T ss_dssp             EEEEECSSCCCCEEEE--TTEEEEEC-SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCS
T ss_pred             EEEEeCCCceeEEecC--CCEEEEEC-CC--CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCC
Confidence            3333333455666655  68999998 43  377766554433222121  1   13455666655  789999888899


Q ss_pred             eEEEEecCCCceEEEecCC-------------CCceeEEEEe--CCEEEEEcCCCCeEEEEE
Q psy5768         470 KIERCDYDGTNRIVLSKIS-------------PLHPFDMAVY--GEFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~-------------~~~p~glav~--~~~lYwtd~~~~~I~~~~  516 (652)
                      .|.++|.........+...             ..-|.|||+.  +++||+|.-.=..++++.
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            9999998654433332211             2368999998  579999987777887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.53  E-value=1e-05  Score=79.14  Aligned_cols=160  Identities=16%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             ceeeeEEEccCCEEEEEeCCC--CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         357 SVEGLAYEYVHNYLYWTCNND--ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      -..||++|.  +.||.+....  .+|.++++...+    .+....-...+.+..+.+..+.||..+|..+  ++...+.+
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgk----v~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~--~v~v~D~~   93 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGR----ILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH--EGFVYDLA   93 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCC----EEEEEECCTTCCEEEEEEETTEEEEEESSSS--EEEEEETT
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCC----EEEEEeCCCCcceeEEEEeCCEEEEEEeeCC--EEEEEECC
Confidence            567999985  8999998764  589999986532    2222222345554444444689999999864  77777664


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCce-EEEecCC----CCceeEEEEeCCEEEEEcCCC
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR-IVLSKIS----PLHPFDMAVYGEFIFWTDWVI  509 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~-~~l~~~~----~~~p~glav~~~~lYwtd~~~  509 (652)
                      .-....-+...   +.|..|..++++||.+|. .++|..+|...... ..+....    +..+-.|...++.||...|.+
T Consensus        94 tl~~~~ti~~~---~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s  169 (243)
T 3mbr_X           94 TLTPRARFRYP---GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLT  169 (243)
T ss_dssp             TTEEEEEEECS---SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTT
T ss_pred             cCcEEEEEeCC---CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCC
Confidence            33222222222   234444455899999995 88999998876433 2222111    234456777799999999999


Q ss_pred             CeEEEEEccCCceEEEEec
Q psy5768         510 HAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       510 ~~I~~~~k~~g~~~~~~~~  528 (652)
                      +.|.++|..+|+....+..
T Consensus       170 ~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             TEEEEECTTTCBEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEEC
Confidence            9999999999998887764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.53  E-value=5.9e-06  Score=90.71  Aligned_cols=190  Identities=17%  Similarity=0.156  Sum_probs=134.5

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEe--eccCceeeeEE-E-ccCCEEEEEe-----------------CCCCeEEEE
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLL--ERQGSVEGLAY-E-YVHNYLYWTC-----------------NNDATINKI  383 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~~~~~~glAv-D-w~~~~LYwtd-----------------~~~~~I~~~  383 (652)
                      .++||+.|..+++|.+++++.-....++  .....|+|+++ . +.++.||.+.                 ...+.+.++
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            4689999999999999999875544444  34468999998 4 7899999985                 334578899


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCC------------ceE---------------------E
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP------------SIQ---------------------R  430 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~------------~I~---------------------r  430 (652)
                      +.+..    +.+.......+|.+++++|..+++|+|...++..            .|.                     .
T Consensus       181 D~~t~----~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          181 DADKW----EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             ETTTT----EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             ECCCC----eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            98753    3333333334899999999999999998765321            000                     1


Q ss_pred             EeecCCC--ceE---EEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCc---------e-EEEecC-CCCceeE
Q psy5768         431 AFFSGFG--TES---IITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN---------R-IVLSKI-SPLHPFD  494 (652)
Q Consensus       431 ~~ldG~~--~~~---l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~---------~-~~l~~~-~~~~p~g  494 (652)
                      .-+|+..  ..+   .+... ..|.|+.+.++++++|.++...+.|..++++...         + .++... ....|.+
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            1123332  111   12211 4799999999999999999999999999998431         0 111111 1368999


Q ss_pred             EEEeC-CEEEEEcCCCCeEEEEEccC
Q psy5768         495 MAVYG-EFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       495 lav~~-~~lYwtd~~~~~I~~~~k~~  519 (652)
                      +++.. +++|.+.+..+.|...+..+
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhH
Confidence            99983 59999999999998887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.52  E-value=1.9e-05  Score=81.06  Aligned_cols=225  Identities=10%  Similarity=0.047  Sum_probs=139.4

Q ss_pred             eecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeec-------cCc
Q psy5768         285 RVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLER-------QGS  357 (652)
Q Consensus       285 ~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~-------~~~  357 (652)
                      ....|..+++..+ .   ....+.... ...+.++++++..+.+|.+....+.|+.+++.+......+..       ...
T Consensus        19 ~~~~v~~~d~~~~-~---~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~   93 (349)
T 1jmx_B           19 YPNNLHVVDVASD-T---VYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS   93 (349)
T ss_dssp             TTTEEEEEETTTT-E---EEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred             CCCeEEEEECCCC-c---EEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence            3456777776222 1   112232211 113567888888888999998888999999875433322221       224


Q ss_pred             eeeeEEEccCCEEEEEeCC-----------CCeEEEEEcCCCCCc-cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCC
Q psy5768         358 VEGLAYEYVHNYLYWTCNN-----------DATINKIDLDSPKAQ-RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHL  425 (652)
Q Consensus       358 ~~glAvDw~~~~LYwtd~~-----------~~~I~~~~~~~~~~~-~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~  425 (652)
                      |.++++++.++.||.+...           .+.|.++++...... .....  .....+.+++++|... ||.++.    
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~-l~~~~~----  166 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGS-LYVAGP----  166 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSC-EEEESS----
T ss_pred             ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccceeECCCCc-EEEccC----
Confidence            8999999999999999854           578999998642111 11122  2234688899999655 877532    


Q ss_pred             CceEEEeecCCCceEEEEcC------------------------------------------------------------
Q psy5768         426 PSIQRAFFSGFGTESIITTD------------------------------------------------------------  445 (652)
Q Consensus       426 ~~I~r~~ldG~~~~~l~~~~------------------------------------------------------------  445 (652)
                       .|...++........+...                                                            
T Consensus       167 -~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  245 (349)
T 1jmx_B          167 -DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT  245 (349)
T ss_dssp             -SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred             -cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence             2444433222111111000                                                            


Q ss_pred             --------CCCCceEEEec-CCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEE
Q psy5768         446 --------ITMPNALALDH-QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLR  514 (652)
Q Consensus       446 --------l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~  514 (652)
                              -..|.++++++ .+++||.+   .+.|..+++........+... ..|.++++.  +++||.+. ..+.|..
T Consensus       246 ~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~-~~~~v~v  320 (349)
T 1jmx_B          246 HTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG-TFNDLAV  320 (349)
T ss_dssp             EEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES-BSSEEEE
T ss_pred             EecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec-CCCeEEE
Confidence                    11456777778 88899988   568999999765543333322 568888886  45888864 4588888


Q ss_pred             EEccCCceEEEEe
Q psy5768         515 ANKYTGEEVYTLR  527 (652)
Q Consensus       515 ~~k~~g~~~~~~~  527 (652)
                      .+..+++.+..+.
T Consensus       321 ~d~~~~~~~~~~~  333 (349)
T 1jmx_B          321 FNPDTLEKVKNIK  333 (349)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             Eeccccceeeeee
Confidence            8887777666554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.49  E-value=0.00034  Score=80.18  Aligned_cols=363  Identities=10%  Similarity=0.084  Sum_probs=210.5

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcc-----eEEEEEcCCCccEEEEeCCCcC------------------------Ccc
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVV-----TIEMAFMDGTKRETVVSQKKYP------------------------AVT   87 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~-----~I~~~~~dgs~~~~v~~~~~~~------------------------~p~   87 (652)
                      ...+.+++++|.+.+|+++.  ...+     .|+.+++++.....+.... ..                        .+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~--~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLR--GKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEE--CCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEe--ccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCcc
Confidence            35688999999999999987  4233     8999999876555554432 11                        145


Q ss_pred             CCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCC---cEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCC
Q psy5768          88 ACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ---YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK  164 (652)
Q Consensus        88 ~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~---~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~  164 (652)
                          ++++...++.|+++..  +.|.+.++++.   ..+.+... -..+..+++.|...+|.++..   ..|...++++.
T Consensus       113 ----~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG~~la~~~~---~~i~~~d~~~g  182 (741)
T 2ecf_A          113 ----DYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKGGFVSFIRG---RNLWVIDLASG  182 (741)
T ss_dssp             ----CCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTSSEEEEEET---TEEEEEETTTT
T ss_pred             ----eeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC-CcccccccCCCCCCEEEEEeC---CcEEEEecCCC
Confidence                8889888888888875  89999998876   44443332 356789999997777887753   37888888775


Q ss_pred             CcEEEEeec----------------ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeee
Q psy5768         165 KQTILAQEI----------------IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKI  228 (652)
Q Consensus       165 ~~~~~~~~~----------------~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v  228 (652)
                      ....+....                +..+.++++.+.+++|++...+++.......      ..  ..      |..-.+
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~------~~--~~------p~~~~~  248 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR------YE--VY------ADRTDV  248 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEE------EE--EC------SSCEEE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEec------CC--CC------CCcccc
Confidence            544433221                1124778999888888887666443322110      00  00      000000


Q ss_pred             eeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeee
Q psy5768         229 YSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR  308 (652)
Q Consensus       229 ~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~  308 (652)
                      ....                                 | ...|.   ..       ....|+.+++......    ..+.
T Consensus       249 ~~~~---------------------------------~-~~~g~---~~-------~~~~l~~~d~~~~~~~----~~~~  280 (741)
T 2ecf_A          249 IEQR---------------------------------Y-PAAGD---AN-------VQVKLGVISPAEQAQT----QWID  280 (741)
T ss_dssp             EEEE---------------------------------C-CBTTS---CC-------CEEEEEEECSSTTCCC----EEEC
T ss_pred             eEee---------------------------------c-CCCCC---CC-------CeeEEEEEECCCCCce----EEec
Confidence            0000                                 0 00000   00       0112233333110110    1111


Q ss_pred             ec-cccceEEEEEEEcCCCeEEEeec----ccccEEEEeccCCcceEEeeccC-----ceeeeEEEccCCEEEEEeCCCC
Q psy5768         309 NS-TMMKNIIELSYDYKRKTLFYSDI----QKGTINSVFFNGSNHRVLLERQG-----SVEGLAYEYVHNYLYWTCNNDA  378 (652)
Q Consensus       309 ~~-~~~~~~~~v~~D~~~~~lywsd~----~~~~I~~~~~~g~~~~~i~~~~~-----~~~glAvDw~~~~LYwtd~~~~  378 (652)
                      .. .....+..+++ +..+.|+++..    ....|+.+++.+.....+.....     ...++++.+.++ ++++....+
T Consensus       281 ~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g  358 (741)
T 2ecf_A          281 LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG  358 (741)
T ss_dssp             CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS
T ss_pred             CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC
Confidence            00 11234567788 87788887643    24568888877655554442211     345789988887 556554444


Q ss_pred             --eEEEEEcCCCCCccEEEEEeCC-CCCceEE-EEeCCCCEEEEEecCCC--CCceEEEeecCCCceEEEEcCCCCCceE
Q psy5768         379 --TINKIDLDSPKAQRIVVVRLGQ-HDKPRGI-DIDSCDSRIYWTNWNSH--LPSIQRAFFSGFGTESIITTDITMPNAL  452 (652)
Q Consensus       379 --~I~~~~~~~~~~~~~~~~~~~~-~~~P~~I-avdp~~g~Lywtd~~~~--~~~I~r~~ldG~~~~~l~~~~l~~P~gl  452 (652)
                        .|+.+++++    .  ...+.. ......+ +++|..+.||++.....  ..+|++..++|...+.|..  ......+
T Consensus       359 ~~~l~~~~~~~----~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~  430 (741)
T 2ecf_A          359 FQHLYRIDSKG----K--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGMHSA  430 (741)
T ss_dssp             SCEEEEECSSS----C--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSEEEE
T ss_pred             ccEEEEEcCCC----C--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCceEE
Confidence              677776554    2  222222 2334466 59998888988765432  3468888888876655543  2334578


Q ss_pred             EEecCCCEEEEEeCCC---CeEEEEecCCCceEEE
Q psy5768         453 ALDHQAEKLFWGDARL---DKIERCDYDGTNRIVL  484 (652)
Q Consensus       453 aiD~~~~~LYw~D~~~---~~I~~~~ldG~~~~~l  484 (652)
                      ++.+++++|.+.-...   ..++..+.+|...+.+
T Consensus       431 ~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l  465 (741)
T 2ecf_A          431 SFARNASVYVDSWSNNSTPPQIELFRANGEKIATL  465 (741)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEEETTSCEEECS
T ss_pred             EECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEe
Confidence            8888888888764332   3577788877654444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.48  E-value=6.6e-06  Score=90.28  Aligned_cols=301  Identities=11%  Similarity=0.050  Sum_probs=180.7

Q ss_pred             CCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEE-E-ccCCcEEEEe-----------------CC
Q psy5768          48 VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAV-D-WIAQNIYWSD-----------------PK  108 (652)
Q Consensus        48 ~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lav-D-w~~~~lY~~d-----------------~~  108 (652)
                      ...++|++|  ..+.+|.|++++--....++.-..-..|.    |+++ . +-++.+|.+.                 ..
T Consensus       100 DG~~lfVnd--~~~~rVavIdl~t~~~~~ii~ip~g~~ph----g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIH----GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEE----EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEc--CCCCEEEEEECCCceEeeEEeCCCCCCCc----ceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            578999999  88999999999875433333322124577    9998 4 6789999984                 23


Q ss_pred             CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCE
Q psy5768         109 ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFS  188 (652)
Q Consensus       109 ~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~  188 (652)
                      .+.+.+.|.+......-+.-+ ..|..++++|..+++|+|...+.-......+....+.                     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d---------------------  231 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD---------------------  231 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE---------------------
T ss_pred             CceEEEEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccc---------------------
Confidence            457888888854322222212 2799999999999999998653210000000000000                     


Q ss_pred             EEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccc
Q psy5768         189 AFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVA  268 (652)
Q Consensus       189 ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~  268 (652)
                                                          .+.|+...+...                              ..
T Consensus       232 ------------------------------------~v~V~~~~~~~~------------------------------~v  245 (595)
T 1fwx_A          232 ------------------------------------HIVVFNIAEIEK------------------------------AI  245 (595)
T ss_dssp             ------------------------------------EEEEEEHHHHHH------------------------------HH
T ss_pred             ------------------------------------eEEEeeccceeE------------------------------ec
Confidence                                                111111111000                              00


Q ss_pred             cCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCc-
Q psy5768         269 QDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-  347 (652)
Q Consensus       269 ~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~-  347 (652)
                      .+|+       ++.+   +.+..|+...... ...+..+..+   .++.++++.+..+++|.++...++|..+++.... 
T Consensus       246 ~~Gk-------~~~i---~~V~VID~~~~~~-~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~  311 (595)
T 1fwx_A          246 AAGD-------YQEL---NGVKVVDGRKEAS-SLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA  311 (595)
T ss_dssp             HHTC-------SEEE---TTEEEEECSGGGC-CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred             cCCC-------eeEE---CcEEEEeCcccCC-ceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc
Confidence            0110       0111   2344444421000 1001223222   4578899999999999999999999999977321 


Q ss_pred             ---------ceEEe--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCC----CC--ccEEEEEeCCCCCc------
Q psy5768         348 ---------HRVLL--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSP----KA--QRIVVVRLGQHDKP------  404 (652)
Q Consensus       348 ---------~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~----~~--~~~~~~~~~~~~~P------  404 (652)
                               ..++.  +.-.+|.++|+|..+ ++|.+....++|.+.+++..    .+  ....+-.+....+|      
T Consensus       312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~  390 (595)
T 1fwx_A          312 VFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV  390 (595)
T ss_dssp             HHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred             ccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence                     01222  222389999999988 99999999999999998651    00  02344444445666      


Q ss_pred             eEEEEeCCCCEEEEEecCCCCCce-----------EEEeecCCCceEEEEc-CCCCCceEEEecCC
Q psy5768         405 RGIDIDSCDSRIYWTNWNSHLPSI-----------QRAFFSGFGTESIITT-DITMPNALALDHQA  458 (652)
Q Consensus       405 ~~Iavdp~~g~Lywtd~~~~~~~I-----------~r~~ldG~~~~~l~~~-~l~~P~glaiD~~~  458 (652)
                      .++++.|...+||.++..+.. ++           ....+.|...+.+... ....|.-.+|++.+
T Consensus       391 ~g~t~~~DGk~l~~~Nk~skd-r~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~~  455 (595)
T 1fwx_A          391 MGETLDATNDWLVCLSKFSKD-RFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPS  455 (595)
T ss_dssp             TTTSTTCCSSEEEEEESCCTT-SSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTT
T ss_pred             cceEeCCCCCEEEEcCCCCcc-ccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccHH
Confidence            567889999999999987632 44           4556666554444322 36789999998654

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.48  E-value=5e-08  Score=73.14  Aligned_cols=38  Identities=37%  Similarity=0.767  Sum_probs=34.6

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |..+||+|+|+|+..+.|+|+|+|+.||.|..| ++|.+
T Consensus         2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E            2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            777899999999998866799999999999999 89986

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.47  E-value=4.1e-08  Score=71.97  Aligned_cols=38  Identities=26%  Similarity=0.634  Sum_probs=34.4

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |..+||+|+|+|+.+++++|+|+|+.||.|..| ++|.+
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d   40 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccC
Confidence            777899999999998876799999999999999 89986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.46  E-value=5.7e-05  Score=77.38  Aligned_cols=149  Identities=11%  Similarity=-0.005  Sum_probs=97.5

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEeeccC--ceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCC--
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLLERQG--SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQ--  400 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~--~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~--  400 (652)
                      .+++|++....+.|+.+++........+..-.  .|.++++++.++.||.+....+.|.++++....  ....+....  
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~~~~~   87 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSSVP   87 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCCST
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEccccc
Confidence            45677777777788888776433322222222  689999999999999999888999999986421  122222221  


Q ss_pred             ---CCCceEEEEeCCCCEEEEEecC---------CCCCceEEEeecCCC---ceEEEEcCCCCCceEEEecCCCEEEEEe
Q psy5768         401 ---HDKPRGIDIDSCDSRIYWTNWN---------SHLPSIQRAFFSGFG---TESIITTDITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       401 ---~~~P~~Iavdp~~g~Lywtd~~---------~~~~~I~r~~ldG~~---~~~l~~~~l~~P~glaiD~~~~~LYw~D  465 (652)
                         ...|.+++++|...+||++...         .....|...++....   ...... .-..+.++++++.++ ||.++
T Consensus        88 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~  165 (349)
T 1jmx_B           88 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG  165 (349)
T ss_dssp             TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES
T ss_pred             ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc
Confidence               2348999999998899998743         112378877776421   112222 223578899998877 88864


Q ss_pred             CCCCeEEEEecCCCc
Q psy5768         466 ARLDKIERCDYDGTN  480 (652)
Q Consensus       466 ~~~~~I~~~~ldG~~  480 (652)
                      .   .|..+++....
T Consensus       166 ~---~i~~~d~~~~~  177 (349)
T 1jmx_B          166 P---DIYKMDVKTGK  177 (349)
T ss_dssp             S---SEEEECTTTCC
T ss_pred             C---cEEEEeCCCCc
Confidence            3   38888886544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.42  E-value=4.6e-05  Score=80.89  Aligned_cols=202  Identities=14%  Similarity=0.126  Sum_probs=128.6

Q ss_pred             cceEEEEEEEcCCCeEEEeeccc------ccEEEEeccCCcceEEeeccCceeeeE----EEccCCEEEEEe--------
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQK------GTINSVFFNGSNHRVLLERQGSVEGLA----YEYVHNYLYWTC--------  374 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~------~~I~~~~~~g~~~~~i~~~~~~~~glA----vDw~~~~LYwtd--------  374 (652)
                      ...+..+..-+..  ||++...+      +.|..++..+.....-.+.-..|.+++    +.+.++.+|-++        
T Consensus       137 ~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccc
Confidence            3456667666554  99987655      678887766433222222222444444    455677777776        


Q ss_pred             ----------CCCCeEEEEEcCCCCCccEEEEEeC-CCCCceEEEE--eCCCCEEEEEec-----CCCCCceEEEeecCC
Q psy5768         375 ----------NNDATINKIDLDSPKAQRIVVVRLG-QHDKPRGIDI--DSCDSRIYWTNW-----NSHLPSIQRAFFSGF  436 (652)
Q Consensus       375 ----------~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~P~~Iav--dp~~g~Lywtd~-----~~~~~~I~r~~ldG~  436 (652)
                                ...++|.+.+++..+  ....+.++ ....|+.|++  +|...++|++..     .+  ..|.....++.
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls--s~V~v~~~d~g  290 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS--SSIWLWFYEDG  290 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC--EEEEEEEEETT
T ss_pred             cccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC--ceEEEEEecCC
Confidence                      236899999987521  22223332 2357888877  999999999986     43  37777666652


Q ss_pred             Cce--EEE--Ec-----C-----------CCCCceEEEecCCCEEEEEeCCCCeEEEEecC-CCceEEEecCCC------
Q psy5768         437 GTE--SII--TT-----D-----------ITMPNALALDHQAEKLFWGDARLDKIERCDYD-GTNRIVLSKISP------  489 (652)
Q Consensus       437 ~~~--~l~--~~-----~-----------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld-G~~~~~l~~~~~------  489 (652)
                      .-+  ..+  ..     .           -..|.+|.|..+++.||+++.+.+.|..++++ ....+.+.....      
T Consensus       291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~  370 (462)
T 2ece_A          291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR  370 (462)
T ss_dssp             EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred             ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence            211  111  11     0           14588999999999999999999999999985 333443322111      


Q ss_pred             ----------CceeEEEEe--CCEEEEEc--------C-----CCCeEEEE--EccCC
Q psy5768         490 ----------LHPFDMAVY--GEFIFWTD--------W-----VIHAVLRA--NKYTG  520 (652)
Q Consensus       490 ----------~~p~glav~--~~~lYwtd--------~-----~~~~I~~~--~k~~g  520 (652)
                                ..|.++++.  +.+||+++        .     .+..++++  |..+|
T Consensus       371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G  428 (462)
T 2ece_A          371 ADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG  428 (462)
T ss_dssp             BCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred             ccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence                      159999986  67999999        3     34567655  55566

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.40  E-value=2.1e-07  Score=74.88  Aligned_cols=48  Identities=33%  Similarity=0.677  Sum_probs=39.3

Q ss_pred             eccCceeeccC--CcccCcccccCC-CceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         573 SCFTGKVLMED--NRSCTINTVCSE-HDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       573 ~Cp~g~~l~~d--~~C~~~~~~C~~-~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      -|++|    +|  ..|..  ..|.+ .+|+|.+|+||+..|+|||+.||.|||||..
T Consensus        29 DC~Dg----sDE~~~C~~--~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~   79 (82)
T 2fyj_A           29 DCGDR----SDESASCAY--PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG   79 (82)
T ss_dssp             SSCST----TTTTSSCCC--SSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSC
T ss_pred             cCCCc----ccccccccc--ccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccC
Confidence            46766    34  34642  46865 8999999999999999999999999999976

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.39  E-value=8e-08  Score=72.03  Aligned_cols=39  Identities=33%  Similarity=0.858  Sum_probs=34.2

Q ss_pred             CCCCCCCCcccceecC-CCceEEEeCCc-cccCCCcccccc
Q psy5768         240 CGVNNGGCAELCLYNG-VSAVCACAHGV-VAQDGKSCSEYD  278 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~-~~~~C~C~~G~-l~~dg~~C~~~~  278 (652)
                      |..+||+|+|+|+..+ ++|.|.|+.|| |.+|+++|.+..
T Consensus         2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~   42 (59)
T 2wph_E            2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAV   42 (59)
T ss_dssp             TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESS
T ss_pred             CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCC
Confidence            7778999999999887 58999999998 678999998643

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=103.39  Aligned_cols=71  Identities=25%  Similarity=0.451  Sum_probs=52.6

Q ss_pred             CceeeeccCceeecc-C-CcccCcccccCCCceeec-cCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCC
Q psy5768         568 GQVVCSCFTGKVLME-D-NRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNN  644 (652)
Q Consensus       568 ~~~~C~Cp~g~~l~~-d-~~C~~~~~~C~~~~f~C~-~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~~~  644 (652)
                      |...|.++....-.- . +.|. .+..|  .+|+|. ||+||+..|+|||++||.|+|||..  |     ...++.|..+
T Consensus        42 gG~~C~~~l~d~~~C~~~~~C~-~~~~c--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~--c-----~~~~~~C~~~  111 (537)
T 3ojy_B           42 HGEPCNFSDKEVEDCVTNRPCR-SQVRC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN--C-----RRIYKKCQHE  111 (537)
T ss_dssp             TCCCCCSCSEEEEECCCCCCCC-CCSCC--SSEECTTTCCEECGGGTTSSSCCSSSSCTTSS--C-----SSCSSCCSSC
T ss_pred             CCCcCccchhhhccCCCccccc-cCCCC--CccCcCCCCcEeeccccCCCCCCCCCcccccc--C-----CCCCCccccC
Confidence            356677764433221 1 4452 24557  799999 8999999999999999999999976  6     4445789888


Q ss_pred             Cccc
Q psy5768         645 KCIL  648 (652)
Q Consensus       645 ~Ci~  648 (652)
                      +|||
T Consensus       112 ~~~~  115 (537)
T 3ojy_B          112 MDQY  115 (537)
T ss_dssp             CBCC
T ss_pred             cCCC
Confidence            9988

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.38  E-value=7.1e-08  Score=70.68  Aligned_cols=41  Identities=32%  Similarity=0.744  Sum_probs=35.4

Q ss_pred             CCCCCCCCcccceecCC-CceEEEeCCc-cccCCCcccccceE
Q psy5768         240 CGVNNGGCAELCLYNGV-SAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~-~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      |..+||+|+|+|+..++ +|+|.|+.|| |..|+++|.+.++|
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec   44 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence            77789999999998887 6999999998 67899999865543

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.36  E-value=1.7e-07  Score=104.20  Aligned_cols=53  Identities=34%  Similarity=0.729  Sum_probs=46.4

Q ss_pred             CCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCcccCCC
Q psy5768         595 EHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       595 ~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ..+|+|.+|.||+..|+|||+.||.|+|||..  |..  |++++|+|.++.||+..+
T Consensus       206 ~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~--C~~--c~~~~~~C~~~~C~~~~~  258 (565)
T 2xrc_A          206 DDFFQCVNGKYISQMKACDGINDCGDQSDELC--CKA--CQGKGFHCKSGVCIPSQY  258 (565)
T ss_dssp             ---CBCTTSCBCCTTSTTSSSCCSSSSSSSSS--BSS--CSSSCEEETTTEEECGGG
T ss_pred             cCeeECCCCCccCHHHcCCCcccCCCCccccc--ccc--cCCCceecCCCcccCccc
Confidence            45699999999999999999999999999987  854  999999999999998653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.36  E-value=0.0046  Score=73.96  Aligned_cols=197  Identities=9%  Similarity=0.051  Sum_probs=119.8

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCC---------CeEEEE
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNND---------ATINKI  383 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~---------~~I~~~  383 (652)
                      ..+..+++.+..+.|+++.. .+.|+..++.+.....+. .....+.++++.+.++.|.++....         ..|.+.
T Consensus       379 ~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             cceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            45678889998888887765 368888888765555555 3344568899999999998876532         478888


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCC---------------CceEEEee---------------
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHL---------------PSIQRAFF---------------  433 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~---------------~~I~r~~l---------------  433 (652)
                      ++.+.    +..........+..++..|...+|||+......               .+++...+               
T Consensus       458 d~~~g----~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1045)
T 1k32_A          458 DMEGR----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  533 (1045)
T ss_dssp             ETTTT----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             ECCCC----cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcc
Confidence            87652    222222334567889999988889987642110               01122211               


Q ss_pred             ---------cCCCceEEE-EcCCCCCceEEEecCCCEEEE------------EeCCCCeEEEEecCCCceEEEecCCCCc
Q psy5768         434 ---------SGFGTESII-TTDITMPNALALDHQAEKLFW------------GDARLDKIERCDYDGTNRIVLSKISPLH  491 (652)
Q Consensus       434 ---------dG~~~~~l~-~~~l~~P~glaiD~~~~~LYw------------~D~~~~~I~~~~ldG~~~~~l~~~~~~~  491 (652)
                               +|...+... ...-....++++.+++..+|.            .......|+.+|+.+...+.+.    ..
T Consensus       534 ~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~  609 (1045)
T 1k32_A          534 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NN  609 (1045)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EE
T ss_pred             ccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cC
Confidence                     221111110 001123356888766544443            1234558999999887776665    33


Q ss_pred             eeEEEEe--CCEEEEEcCCCCeEEEEEccCCc
Q psy5768         492 PFDMAVY--GEFIFWTDWVIHAVLRANKYTGE  521 (652)
Q Consensus       492 p~glav~--~~~lYwtd~~~~~I~~~~k~~g~  521 (652)
                      +.++++.  +.+|+++...  .|..++..+++
T Consensus       610 v~~~~~S~DG~~l~~~~~~--~i~~~d~~~~~  639 (1045)
T 1k32_A          610 LTDLRLSADRKTVMVRKDD--GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEECTTSCEEEEEETT--SCEEEEESSCT
T ss_pred             cceEEECCCCCEEEEEcCC--cEEEEeCccCc
Confidence            4566664  5689888755  46666665555

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.35  E-value=8.4e-08  Score=69.71  Aligned_cols=40  Identities=38%  Similarity=0.951  Sum_probs=34.9

Q ss_pred             CCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccce
Q psy5768         240 CGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDA  279 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~  279 (652)
                      |..+|++|+|+|++.+++|+|.|+.|| |..|+++|.+.++
T Consensus         1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide   41 (51)
T 1kig_L            1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER   41 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSS
T ss_pred             CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCc
Confidence            667799999999998889999999998 6789999986544

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.34  E-value=1.1e-07  Score=70.33  Aligned_cols=42  Identities=36%  Similarity=0.862  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccce
Q psy5768         238 NPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDA  279 (652)
Q Consensus       238 n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~  279 (652)
                      ++|...|++|+|+|++.+++|+|.|+.|| |..|+++|.+..+
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~dide   44 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP   44 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcc
Confidence            78998899999999999889999999998 6789999985443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.33  E-value=0.0003  Score=75.00  Aligned_cols=226  Identities=10%  Similarity=0.058  Sum_probs=150.2

Q ss_pred             cceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeeccc--ccEEEEeccCCcceEEeeccCceeeeEEE
Q psy5768         287 NRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQK--GTINSVFFNGSNHRVLLERQGSVEGLAYE  364 (652)
Q Consensus       287 ~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~--~~I~~~~~~g~~~~~i~~~~~~~~glAvD  364 (652)
                      ..|+..++ ++...    ..+..  +...+.++++.+..++|+++....  ..|+..++.+.....+......+..+++.
T Consensus       159 ~~i~i~d~-~g~~~----~~l~~--~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          159 YELRVSDY-DGYNQ----FVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS  231 (415)
T ss_dssp             EEEEEEET-TSCSC----EEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC
T ss_pred             ceEEEEcC-CCCCC----EEEeC--CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc
Confidence            46777777 44221    23322  124577899999999999887543  57888898765555554444567889999


Q ss_pred             ccCCEEEEEeCC--CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE
Q psy5768         365 YVHNYLYWTCNN--DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII  442 (652)
Q Consensus       365 w~~~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~  442 (652)
                      +.++.|+++...  ...|++.++.+..   ...+ .........++..|...+|+++......++|+..++++...+.+.
T Consensus       232 pdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~  307 (415)
T 2hqs_A          232 PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT  307 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCC---EEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCC---EEeC-cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe
Confidence            999999987654  3458888886532   2222 123356788999998888888764333458999888876654433


Q ss_pred             EcCCCCCceEEEecCCCEEEEEeCC--CCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCC--eEEEEE
Q psy5768         443 TTDITMPNALALDHQAEKLFWGDAR--LDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIH--AVLRAN  516 (652)
Q Consensus       443 ~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~--~I~~~~  516 (652)
                      . .-.....+++.+++++|+++...  ...|..+++++...+.+...  ....++++.  +.+|+++....+  .|+.++
T Consensus       308 ~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          308 W-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             C-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             c-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            2 22345678999999999988654  45899999998776554432  356777775  457777654444  788888


Q ss_pred             ccCCceEEEEe
Q psy5768         517 KYTGEEVYTLR  527 (652)
Q Consensus       517 k~~g~~~~~~~  527 (652)
                      .. |...+.+.
T Consensus       385 ~~-g~~~~~l~  394 (415)
T 2hqs_A          385 TD-GRFKARLP  394 (415)
T ss_dssp             TT-SCCEEECC
T ss_pred             CC-CCcEEEee
Confidence            75 44444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.28  E-value=0.00017  Score=74.17  Aligned_cols=163  Identities=18%  Similarity=0.202  Sum_probs=107.7

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCC-------EEEEEeccCC--cceEEEEEcCCC--
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKG-------KMFWSNVTKQ--VVTIEMAFMDGT--   72 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-------~lyw~d~~~~--~~~I~~~~~dgs--   72 (652)
                      +++.-..+.++++|++|+.+..+..         .++.+|++-|.-.       .+|.++  ..  .++|..+.+|..  
T Consensus        43 ii~t~k~~gL~Vydl~G~~l~~~~~---------g~~nnVD~r~~~~l~g~~~dla~as~--R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           43 LITTNKKSGLVVYSLDGKMLHSYNT---------GKLNNVDIRYDFPLNGKKVDIAAASN--RSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             EEEEETTTEEEEEETTSCEEEEECC---------SCEEEEEEEEEEEETTEEEEEEEEEE--CSTTCCEEEEEEECTTTC
T ss_pred             EEEEcCCCCEEEEcCCCcEEEEccC---------CCcccEEEecccccCCceEeEEEEeC--CCCCCCeEEEEEECCCCC
Confidence            5555556899999999998877642         3677888876321       579999  77  888888877633  


Q ss_pred             ccEEEE------eCCCcCCccCCCCcEEE--EccCCc--EEEEeCCCCEEEEEEc----CCCcEEEEEeC--CCCCceeE
Q psy5768          73 KRETVV------SQKKYPAVTACNLHIAV--DWIAQN--IYWSDPKENVIEVARL----TGQYRYVLISG--GVDQPSAL  136 (652)
Q Consensus        73 ~~~~v~------~~~~~~~p~~~~~~lav--Dw~~~~--lY~~d~~~~~I~v~~~----dg~~~~~l~~~--~~~~P~~i  136 (652)
                      ....+.      .+. +..|.    ||++  +..++.  +|+++. .++++...+    +|.....++..  .-.+|.++
T Consensus       112 ~l~~i~~~~~pv~t~-~~~py----Glcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc  185 (355)
T 3amr_A          112 TLQSMTDPDHPIATA-INEVY----GFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM  185 (355)
T ss_dssp             CEEECSCTTSCEECC-CSSCC----CEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred             ceeeccccccCcCCC-CCCee----EEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence            223331      133 45666    9999  887776  555554 478877554    33232222221  12589999


Q ss_pred             EEcCCCCeEEEEecCCCCeEEEEeCCCCC---cEEEEee---ccc-CceeEEEecc
Q psy5768         137 AVDPESGYLFWSESGKIPLIARAGLDGKK---QTILAQE---IIM-PIKDITLDLK  185 (652)
Q Consensus       137 avd~~~g~lywtd~~~~~~I~~~~ldg~~---~~~~~~~---~~~-~p~gl~lD~~  185 (652)
                      ++|+..|+||.+++.  ..|++.+.+...   ++.+..-   .+. .|.||+|.+.
T Consensus       186 vvDd~~g~Lyv~eEd--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~  239 (355)
T 3amr_A          186 AADDEYGRLYIAEED--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA  239 (355)
T ss_dssp             EEETTTTEEEEEETT--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC
T ss_pred             EEcCCCCeEEEeccc--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec
Confidence            999999999999985  469999965332   3333221   243 7999999744

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.24  E-value=5.9e-07  Score=65.21  Aligned_cols=37  Identities=38%  Similarity=0.846  Sum_probs=33.1

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |..+|++|+|+|+.+++ +|+|.|+.||.|..| ++|.+
T Consensus         1 C~~~ng~C~~~C~n~~g-s~~C~C~~Gy~L~~d~~tC~d   38 (51)
T 1kig_L            1 CSLDNGGCDQFCREERS-EVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             CCTTTTSSSSCCCEETT-EECCCCCTTEEECTTSSCEEE
T ss_pred             CCCCCCCcCCEeEcCCC-CeEEeCCCCcEECCCCCcccc
Confidence            66778999999998876 799999999999999 89976

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.18  E-value=1.1e-06  Score=96.65  Aligned_cols=75  Identities=24%  Similarity=0.442  Sum_probs=49.8

Q ss_pred             ceeeeccCceeec-cC-CcccCcccccCCCceeec-cCeecCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCC
Q psy5768         569 QVVCSCFTGKVLM-ED-NRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNK  645 (652)
Q Consensus       569 ~~~C~Cp~g~~l~-~d-~~C~~~~~~C~~~~f~C~-~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~~~C~~~~f~C~~~~  645 (652)
                      ...|..+.+.... .. ..|.+ +..|. .+|+|. +|+||+..|+|||++||.|+|||..  |..  +....+.|....
T Consensus        41 G~~C~~~l~d~~~C~~~~~c~~-~~~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~--C~~--~~~~~~~C~~~~  114 (554)
T 3ojy_A           41 GTICSGDIWDQASCSSSTTCVR-QAQCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD--CED--VRAIDEDCSQYE  114 (554)
T ss_dssp             CCCCCSCSEEEEECCCCCCC---CCCCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSS--CCS--CCCCCTTTTTSC
T ss_pred             CCCCCCccccccCCCCCCCCcc-cCCCC-CcCccCCCCEEcccccccCCcccCCCcccccc--CCC--CCCCcccccccc
Confidence            4556655333221 11 44532 45674 799999 8999999999999999999999987  753  222345565555


Q ss_pred             cccC
Q psy5768         646 CILS  649 (652)
Q Consensus       646 Ci~~  649 (652)
                      +||.
T Consensus       115 ~iPg  118 (554)
T 3ojy_A          115 PIPG  118 (554)
T ss_dssp             BCTT
T ss_pred             ccCc
Confidence            6553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.16  E-value=0.00044  Score=71.04  Aligned_cols=177  Identities=9%  Similarity=0.106  Sum_probs=109.9

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEccC-------CEEEEEeCC--CCeEEEEEcCCCCCccEEEEE-----eCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEYVH-------NYLYWTCNN--DATINKIDLDSPKAQRIVVVR-----LGQH  401 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~-------~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~~-----~~~~  401 (652)
                      +.++.++++|...+.+-  .+.+.++.+-.--       ..+|.++..  .++|.+++++........+..     .+.+
T Consensus        50 ~gL~Vydl~G~~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           50 SGLVVYSLDGKMLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI  127 (355)
T ss_dssp             TEEEEEETTSCEEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC
T ss_pred             CCEEEEcCCCcEEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC
Confidence            34555555554333321  1344444443311       146889988  899999988643322122200     1345


Q ss_pred             CCceEEEE--eCCCC--EEEEEecCCCCCceEEEee--c--CCCceEEEEc-C-CCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         402 DKPRGIDI--DSCDS--RIYWTNWNSHLPSIQRAFF--S--GFGTESIITT-D-ITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       402 ~~P~~Iav--dp~~g--~Lywtd~~~~~~~I~r~~l--d--G~~~~~l~~~-~-l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ..|.||++  +|..+  ++|+++..   ++++...+  +  |.....++.+ . -..|.|+++|...++||.++...+ |
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~---G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-I  203 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKE---GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-I  203 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSS---SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-E
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCC---CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-E
Confidence            89999999  88777  57777654   36666554  2  2222233321 1 247889999999999999999865 9


Q ss_pred             EEEecCCC---ceEEEecC---CC-CceeEEEEe-C----CEEEEEcCCCCeEEEEEcc
Q psy5768         472 ERCDYDGT---NRIVLSKI---SP-LHPFDMAVY-G----EFIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       472 ~~~~ldG~---~~~~l~~~---~~-~~p~glav~-~----~~lYwtd~~~~~I~~~~k~  518 (652)
                      ++++.+..   .++.+...   .+ ..|-||+++ .    +||+.++..+++....+..
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99996632   24444221   22 379999996 3    4999999988887666664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.14  E-value=5.4e-05  Score=80.36  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=95.3

Q ss_pred             EEEEcCCCeEEEee------------------cccccEEEEeccCCcc-eEEeec--cCceeeeEE--EccCCEEEEEeC
Q psy5768         319 LSYDYKRKTLFYSD------------------IQKGTINSVFFNGSNH-RVLLER--QGSVEGLAY--EYVHNYLYWTCN  375 (652)
Q Consensus       319 v~~D~~~~~lywsd------------------~~~~~I~~~~~~g~~~-~~i~~~--~~~~~glAv--Dw~~~~LYwtd~  375 (652)
                      +-|.+..+.+|.++                  ...++|..++++.... +++-.+  -..|..|++  ++.++.+|.+..
T Consensus       193 ~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          193 FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred             EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence            44466666667665                  2357777777764321 222221  136778877  999999999998


Q ss_pred             -----CCCeEEEEEcCCCCCccEEEEEeCC-----------------CCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         376 -----NDATINKIDLDSPKAQRIVVVRLGQ-----------------HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       376 -----~~~~I~~~~~~~~~~~~~~~~~~~~-----------------~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                           ..++|.++..++.......++....                 ...|.+|+++|..++||+++|+..  .|....+
T Consensus       273 ~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d--~VavfdV  350 (462)
T 2ece_A          273 VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG--EVRQYDI  350 (462)
T ss_dssp             EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT--EEEEEEC
T ss_pred             eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC--EEEEEEe
Confidence                 8889988776541101222221111                 256899999999999999999975  6666555


Q ss_pred             c-CCCceEEEEcCCC----------------CCceEEEecCCCEEEEEe
Q psy5768         434 S-GFGTESIITTDIT----------------MPNALALDHQAEKLFWGD  465 (652)
Q Consensus       434 d-G~~~~~l~~~~l~----------------~P~glaiD~~~~~LYw~D  465 (652)
                      + ..+.+.+-...+.                +|.+++|++++++||++.
T Consensus       351 ~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          351 SNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            3 4333333322222                699999999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.13  E-value=0.0069  Score=62.86  Aligned_cols=118  Identities=14%  Similarity=0.031  Sum_probs=69.1

Q ss_pred             EEEEEEEcCCCeEEEeecc-cc---cEEEEeccCCcceEEeecc------CceeeeEEEccCCEEEEEe--------CCC
Q psy5768         316 IIELSYDYKRKTLFYSDIQ-KG---TINSVFFNGSNHRVLLERQ------GSVEGLAYEYVHNYLYWTC--------NND  377 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~-~~---~I~~~~~~g~~~~~i~~~~------~~~~glAvDw~~~~LYwtd--------~~~  377 (652)
                      +..+.|.+..++|+++... ..   .|+.+++.+...+.+....      ..+.++++.+.++.|+++-        ...
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            4456777777777554332 22   3888888765544443211      1256678888888888753        445


Q ss_pred             CeEEEEEcCCCCCccEEEEEeCC-CC--------CceEEEEeCCCCEEEEEecCCCCCceEEEeecC
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLGQ-HD--------KPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG  435 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~~-~~--------~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG  435 (652)
                      ..|.++++.+..  .+.+..... ..        ....++..|...+|+++......+.|+++.+..
T Consensus       320 ~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          320 PFLYVFNMKNGT--QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             CEEEEEETTTTE--EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             CEEEEEeccCCc--eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence            689899887532  222222111 00        356788999888888876544446788777653

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.08  E-value=1.2e-06  Score=64.66  Aligned_cols=39  Identities=33%  Similarity=0.767  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|...|++|+|+|+.+++ +|+|.|+.||.|..| ++|.+
T Consensus         2 dEC~~~~~~C~~~C~nt~G-sy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQN-SVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCcCcEeEcCCC-CeEEeCCCCCEECCCCCeecc
Confidence            6788888999999998876 699999999999998 88976

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.08  E-value=0.00031  Score=70.48  Aligned_cols=173  Identities=10%  Similarity=-0.049  Sum_probs=119.5

Q ss_pred             eEEEecCCCCeEEEEec-CCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      .|+|++..++.|+++|. +|+.+-++....      ...+.++++++.. +||++.    ...|+.++++|...-.+-..
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------~~~~~~~~~~pdG-~ilvs~----~~~V~~~d~~G~~~W~~~~~   74 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEK------GWECNSVAATKAG-EILFSY----SKGAKMITRDGRELWNIAAP   74 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCT------TCCCCEEEECTTS-CEEEEC----BSEEEEECTTSCEEEEEECC
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCc------cCCCcCeEECCCC-CEEEeC----CCCEEEECCCCCEEEEEcCC
Confidence            47899999999999999 899887777521      1367889999865 555554    56799999988755444221


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCC-CCEEEEEEcCCCcEEEEEe-CC----CCCceeEEEcCCCCeEEEEecCCCC
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPK-ENVIEVARLTGQYRYVLIS-GG----VDQPSALAVDPESGYLFWSESGKIP  154 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~-~~~I~v~~~dg~~~~~l~~-~~----~~~P~~iavd~~~g~lywtd~~~~~  154 (652)
                      . -..+.    +.++.. .+++++++.. .++|..++.+|+....+-- ..    ...|+.+++++ +|.+++++.. ..
T Consensus        75 ~-~~~~~----~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-~~  146 (276)
T 3no2_A           75 A-GCEMQ----TARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-TS  146 (276)
T ss_dssp             T-TCEEE----EEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-TT
T ss_pred             C-Ccccc----ccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-CC
Confidence            1 12234    556654 6788888877 7889999999986554432 11    23678889987 6777788875 56


Q ss_pred             eEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         155 LIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       155 ~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      +|...+.+|+....+-..  .+|.++.++. ++.+++++.++
T Consensus       147 ~v~~~d~~G~~~w~~~~~--~~~~~~~~~~-~g~~~v~~~~~  185 (276)
T 3no2_A          147 EVREIAPNGQLLNSVKLS--GTPFSSAFLD-NGDCLVACGDA  185 (276)
T ss_dssp             EEEEECTTSCEEEEEECS--SCCCEEEECT-TSCEEEECBTT
T ss_pred             EEEEECCCCCEEEEEECC--CCccceeEcC-CCCEEEEeCCC
Confidence            899998888755554332  4677887764 45666666653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.05  E-value=0.00041  Score=68.57  Aligned_cols=199  Identities=7%  Similarity=-0.016  Sum_probs=129.8

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccC-CcceEEeecc--CceeeeEEEccCCEEEEEeCC---CCeEEEEEcCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNG-SNHRVLLERQ--GSVEGLAYEYVHNYLYWTCNN---DATINKIDLDS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g-~~~~~i~~~~--~~~~glAvDw~~~~LYwtd~~---~~~I~~~~~~~  387 (652)
                      ..+.++++.+..+.|++..  .+.|+..++++ .....+....  ..+..+++.+.++.|+++...   ...|+.+++.+
T Consensus        42 ~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG  119 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred             cceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence            3467888998888888765  46899998887 5555544332  467889999999999998743   56788888765


Q ss_pred             CCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC-
Q psy5768         388 PKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA-  466 (652)
Q Consensus       388 ~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~-  466 (652)
                      ..  ...   +.....+..+++.|...+|+++.......+|+...+++.....+.. .-..+..+++++.++.|+++.. 
T Consensus       120 ~~--~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  193 (297)
T 2ojh_A          120 GT--PRL---MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-GEGRNDGPDYSPDGRWIYFNSSR  193 (297)
T ss_dssp             CC--CEE---CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-SSSCEEEEEECTTSSEEEEEECT
T ss_pred             Cc--eEE---eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-CCCccccceECCCCCEEEEEecC
Confidence            32  122   2334457889999988888876543332367777776655433322 2345678999999998888753 


Q ss_pred             -CCCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCC----------CCeEEEEEccCCc
Q psy5768         467 -RLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWV----------IHAVLRANKYTGE  521 (652)
Q Consensus       467 -~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~----------~~~I~~~~k~~g~  521 (652)
                       +...|+.++.++...+.+.... .....+++.  +.+|++....          ...|+..+..+++
T Consensus       194 ~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             TSSCEEEEEETTSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             CCCccEEEECCCCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence             4557777877776665554322 334555554  4567665442          2456666665554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.02  E-value=0.063  Score=65.13  Aligned_cols=432  Identities=7%  Similarity=-0.040  Sum_probs=230.2

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEE
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVAR  116 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~  116 (652)
                      ...+.++++++.+.+|....   ..+.|..++.........+... ...+.    .+++.+.++.| .+-+..+.|.+.+
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~h-~~~v~----~~~~s~~~~~l-~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCG---ADKTLQVFKAETGEKLLDIKAH-EDEVL----CCAFSSDDSYI-ATCSADKKVKIWD  685 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEECCC-SSCEE----EEEECTTSSEE-EEEETTSEEEEEE
T ss_pred             cccEEEEEECCCCCEEEEEe---CCCeEEEEECCCCCEEEEeccC-CCCEE----EEEEecCCCEE-EEEeCCCeEEEEE
Confidence            35789999999888887655   5678888888655433334444 45567    88888755544 4444578899999


Q ss_pred             cCCCcEEEEEeCCCCCceeEEEcCCCCe-EEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         117 LTGQYRYVLISGGVDQPSALAVDPESGY-LFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       117 ~dg~~~~~l~~~~~~~P~~iavd~~~g~-lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      .........+.........++..|.... ++.+- +....|..-+++...........-...+.+++.+.+..|.....+
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG-SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEE-ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEE-eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            8755444444444456778888875333 33332 234567666766544333332223567888888877777666666


Q ss_pred             CCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         196 KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       196 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      | ..+..-.........  +.           ........ ..+-.....           ...|.+           ..
T Consensus       765 g-~v~vwd~~~~~~~~~--~~-----------~~~~~~~~-~~~~~~~~~-----------~v~~~~-----------~s  807 (1249)
T 3sfz_A          765 G-TLRLWDVRSANERKS--IN-----------VKRFFLSS-EDPPEDVEV-----------IVKCCS-----------WS  807 (1249)
T ss_dssp             S-EEEEEEGGGTEEEEE--EE-----------CCCCC---------CCCC-----------CBCCCC-----------BC
T ss_pred             C-eEEEEeCCCCcccce--ec-----------cccccccc-CCccccccc-----------eEEEEE-----------EC
Confidence            3 332221111111000  00           00000000 000000000           000000           00


Q ss_pred             ccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ec
Q psy5768         276 EYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ER  354 (652)
Q Consensus       276 ~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~  354 (652)
                      +...+++.+....+...++..+.    ....+.. .+...+..++|.+....++... ..+.|...+++........ ..
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~----~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSG----LLAEIHT-GHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCC----EEEEEEC-SSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCEEEEEcCCcEEEEEecCCC----ceeEEcC-CCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeeecCCC
Confidence            11234555555666666652221    1111211 2224456788888776666554 4577887777654333333 34


Q ss_pred             cCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC---------------------------ccEEEEE-------eCC
Q psy5768         355 QGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA---------------------------QRIVVVR-------LGQ  400 (652)
Q Consensus       355 ~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~---------------------------~~~~~~~-------~~~  400 (652)
                      ...+.++++.+.++.|+-+ +..+.|.+-++.....                           ....+..       ...
T Consensus       882 ~~~v~~v~~spdg~~l~s~-s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1249)
T 3sfz_A          882 LSWVHGVMFSPDGSSFLTA-SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP  960 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEE-ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred             ccceEEEEECCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence            4568899999877766544 4556666665431000                           0000000       011


Q ss_pred             CCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCc
Q psy5768         401 HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN  480 (652)
Q Consensus       401 ~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~  480 (652)
                      ......++++|...++......   +.|....+............-....++++.+.++.|..+. ..+.|...++....
T Consensus       961 ~~~i~~~~~sp~g~~l~~g~~~---g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          961 EAQVSCCCLSPHLEYVAFGDED---GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS-EDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             CSCEEEEEECTTSSEEEEEETT---SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC-SSSBEEEEETTTTE
T ss_pred             cCcEEEEEEcCCCCEEEEEcCC---CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCc
Confidence            2456788999987777776543   3565555554333222222234567899998887777654 44678888887655


Q ss_pred             eEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         481 RIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       481 ~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ...+.. .......+++..+..+.+-...+.|...+..+|+....+.
T Consensus      1037 ~~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1037 YVFLQA-HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             EECCBC-CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred             eEEEec-CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence            443222 2244566666654334444456677777777776665554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.02  E-value=0.031  Score=61.38  Aligned_cols=456  Identities=13%  Similarity=0.114  Sum_probs=238.7

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      |+.+ ..++.|.++|.+|+.+.++..+.       ..+.+|+|+|.+.+|.-..   ..+.|..++++|.....+ ... 
T Consensus        31 las~-~~d~~v~iWd~~~~~~~~l~gh~-------~~V~~l~fspdg~~las~~---~d~~i~vWd~~~~~~~~~-~~~-   97 (577)
T 2ymu_A           31 IASA-SDDKTVKLWNRNGQLLQTLTGHS-------SSVWGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTL-TGH-   97 (577)
T ss_dssp             EEEE-ETTSEEEEECTTSCEEEEEECCS-------SCEEEEEECTTSSEEEEEE---TTSCEEEEETTSCEEEEE-CCC-
T ss_pred             EEEE-eCCCEEEEEECCCCEEEEEeCCC-------CCEEEEEECCCCCEEEEEe---CCCEEEEEECCCCEEEEE-ECC-
Confidence            3444 34577999999999888876532       4789999999877777554   567888899887655444 333 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...+.    ++++....+.|. +-...+.+...+..+...... .........++..|....++.....  ..+.....+
T Consensus        98 ~~~v~----~~~~s~d~~~l~-~~~~d~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~  169 (577)
T 2ymu_A           98 SSSVR----GVAFSPDGQTIA-SASDDKTVKLWNRNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDD--KTVKLWNRN  169 (577)
T ss_dssp             SSCEE----EEEECTTSSEEE-EEETTSCEEEEETTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETT--SEEEEECTT
T ss_pred             CCCEE----EEEECCCCCEEE-EEcCCCceeecccccceeeec-cCCCCceeeeeeecCCccceecccc--cceeccccc
Confidence            45567    888877555444 333456666666666544333 2233455677777765556554432  233333333


Q ss_pred             CCCcEEEEeecccCceeEEEeccCCEEEEEeCCC---------CcEEEEEecCCCCceEEEeecCCC-----CCcceeee
Q psy5768         163 GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK---------GNIHIISLSNLSDVSTISMKPYGD-----SYLKDIKI  228 (652)
Q Consensus       163 g~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g---------~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~i~v  228 (652)
                      +..... ..........+++.+.+..|+-...+|         ...+.+. ........+++.++..     ..-..+++
T Consensus       170 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~i~~  247 (577)
T 2ymu_A          170 GQLLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKL  247 (577)
T ss_dssp             SCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             eeeeee-ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEe-cCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            322222 112233445566666555555444332         1111110 0000111111111100     00011222


Q ss_pred             eeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc---ccceEEEEee-ecceeEEecCCCCCCCCCc
Q psy5768         229 YSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS---EYDAFIMYSR-VNRIDSIHMTDKSDLNSPF  304 (652)
Q Consensus       229 ~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~---~~~~~Ll~s~-~~~i~~i~l~~~~~~~~p~  304 (652)
                      |+..            +.+-.  ...+..            ...++.   +....|+.+. ...|+..+. ++.    ..
T Consensus       248 w~~~------------~~~~~--~~~~~~------------~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~----~~  296 (577)
T 2ymu_A          248 WNRN------------GQLLQ--TLTGHS------------SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQ----LL  296 (577)
T ss_dssp             ECTT------------SCEEE--EECCCS------------SCEEEEEECTTSSEEEEEETTSCEEEEET-TSC----EE
T ss_pred             EeCC------------CCEEE--EEecCC------------CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCc----EE
Confidence            2210            00000  000000            000111   1112333333 233444443 221    11


Q ss_pred             eeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEE
Q psy5768         305 ESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID  384 (652)
Q Consensus       305 ~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~  384 (652)
                      ..+.  .+...+.+++|.+..+.|.-. ...+.|...++++.....+......+.++++.+.++.|.... ..+.|.+.+
T Consensus       297 ~~~~--~h~~~v~~~~~~~~~~~l~t~-~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~~~~  372 (577)
T 2ymu_A          297 QTLT--GHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWN  372 (577)
T ss_dssp             EEEC--CCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEE
T ss_pred             EEEe--cCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEc
Confidence            2222  223457789998876655544 345778777877765544444445678899998888776544 457787777


Q ss_pred             cCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEE
Q psy5768         385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~  464 (652)
                      ..+.   ....+ ......+++|++.|...+|......   ..|...+.+|.....+.. .-....+|++.+.+++|..+
T Consensus       373 ~~~~---~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~  444 (577)
T 2ymu_A          373 RNGQ---LLQTL-TGHSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDDQTIASA  444 (577)
T ss_dssp             TTCC---EEEEE-ECCSSCEEEEEECTTSSCEEEEETT---SEEEEECTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEE
T ss_pred             CCCC---EEEEe-cCCCCCeEEEEECCCCCEEEEEeCC---CEEEEEeCCCCEEEEecC-CCCCeEEEEECCCCCEEEEE
Confidence            6542   12222 2344678899999977777665443   255555666654333332 22345688998888777765


Q ss_pred             eCCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         465 DARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       465 D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      . ..+.|...++++.....+... .....++++.. +.+..+-...+.|..-+. +|+..+.+.
T Consensus       445 ~-~d~~v~~w~~~~~~~~~~~~~-~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~  505 (577)
T 2ymu_A          445 S-DDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  505 (577)
T ss_dssp             E-TTSEEEEEETTSCEEEEEECC-SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             c-CCCEEEEEECCCCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence            4 345778888888766655442 24556777752 333344344555655553 555544444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.01  E-value=0.00073  Score=70.49  Aligned_cols=174  Identities=13%  Similarity=0.092  Sum_probs=115.2

Q ss_pred             CCeEEEEecCCC---eeEEEe-cCCCCCCCCCCCeeEEEEE-CC------CCEEEEEeccCCcceEEEEEcCC-CccEEE
Q psy5768          10 QSKIVVCNLEGE---YQTTIL-SNESNDTSTLSKISSIAVW-PV------KGKMFWSNVTKQVVTIEMAFMDG-TKRETV   77 (652)
Q Consensus        10 ~~~I~~~~~~g~---~~~~~~-~~~~~~~~~~~~~~~v~~d-~~------~~~lyw~d~~~~~~~I~~~~~dg-s~~~~v   77 (652)
                      .-+|.++|+...   .++++. +..  ....-+....|.+| ..      ++++|.+|  .....|..+++.. ..++++
T Consensus       122 ~pkLv~~DL~t~~~~li~~y~~p~~--~~~~~S~l~di~VD~~~~~~~c~~~~aYItD--~~~~gLIVydl~~~~swRv~  197 (381)
T 3q6k_A          122 RPAIVAYDLKQPNYPEVVRYYFPTR--LVEKPTYFGGFAVDVANPKGDCSETFVYITN--FLRGALFIYDHKKQDSWNVT  197 (381)
T ss_dssp             CCEEEEEESSSTTCCEEEEEECCGG--GCCCGGGEEEEEEEESCTTTTSCSEEEEEEE--TTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCceeEEEEECCHH--hcccCCccceEEEecccCCCCCCccEEEEEc--CCCCcEEEEECCCCcEEEEc
Confidence            458999999965   555543 211  11123577888898 32      68999999  7778888888763 334333


Q ss_pred             E------------eCC-Cc---CCccCCCCcEEEEcc----CCcEEEEeCCCCEEEEEEc----CC---CcEEEEEeCC-
Q psy5768          78 V------------SQK-KY---PAVTACNLHIAVDWI----AQNIYWSDPKENVIEVARL----TG---QYRYVLISGG-  129 (652)
Q Consensus        78 ~------------~~~-~~---~~p~~~~~~lavDw~----~~~lY~~d~~~~~I~v~~~----dg---~~~~~l~~~~-  129 (652)
                      -            -.| .+   ....    |||+...    .+.|||.-....+..+...    +.   ...+.+...+ 
T Consensus       198 ~~~~~pd~~~~~~i~G~~~~~~~Gi~----gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~  273 (381)
T 3q6k_A          198 HPTFKAERPTKFDYGGKEYEFKAGIF----GITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGK  273 (381)
T ss_dssp             CGGGSCCSCEEEEETTEEEEECCCEE----EEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCT
T ss_pred             cCCCccccCcceEECCEEeEeccCce----EEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCC
Confidence            0            011 00   1234    8999887    7899999877778887762    22   2233444432 


Q ss_pred             CCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC-----CCcEEEEeec-ccCceeEEEeccCCEEEEEe
Q psy5768         130 VDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-----KKQTILAQEI-IMPIKDITLDLKFFSAFYRN  193 (652)
Q Consensus       130 ~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg-----~~~~~~~~~~-~~~p~gl~lD~~~~~ly~~d  193 (652)
                      ..+..++++|+.+|.||+++.. ...|.+-+.++     .+..+++... +.||.++++|. .+.||+..
T Consensus       274 ~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~s  341 (381)
T 3q6k_A          274 YNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMS  341 (381)
T ss_dssp             TCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEE
T ss_pred             CCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEE
Confidence            2445578999889999999986 56899988877     2335555444 89999999996 45788754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.01  E-value=0.0037  Score=64.98  Aligned_cols=181  Identities=10%  Similarity=-0.018  Sum_probs=105.4

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEc-cCCEEEEEeCC-----CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEE
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEY-VHNYLYWTCNN-----DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDI  409 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw-~~~~LYwtd~~-----~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iav  409 (652)
                      ..|+.+++.+...+.+......+..+++.+ .++.|+++...     ...|+.+++++..  .+.+............+.
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~  245 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFW  245 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEE
T ss_pred             ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceE
Confidence            456666665544444544444577889988 88888776643     4489999887643  222211110012446789


Q ss_pred             eCCCCEEEEEecCCCCCc--eEEEeecCCCceEEEEcCC-----CCCceEEEecCCCEEEEEe--------CCCCeEEEE
Q psy5768         410 DSCDSRIYWTNWNSHLPS--IQRAFFSGFGTESIITTDI-----TMPNALALDHQAEKLFWGD--------ARLDKIERC  474 (652)
Q Consensus       410 dp~~g~Lywtd~~~~~~~--I~r~~ldG~~~~~l~~~~l-----~~P~glaiD~~~~~LYw~D--------~~~~~I~~~  474 (652)
                      .|....|+++........  |+..++++...+.+....-     ..|.++++.+++++|+++-        .....|+.+
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            998777755443222223  9999998877665543221     1256667777888888753        445689999


Q ss_pred             ecCCCceEEEecCCCC----------ceeEEEEe--CCEEEEEcCCC--CeEEEEEcc
Q psy5768         475 DYDGTNRIVLSKISPL----------HPFDMAVY--GEFIFWTDWVI--HAVLRANKY  518 (652)
Q Consensus       475 ~ldG~~~~~l~~~~~~----------~p~glav~--~~~lYwtd~~~--~~I~~~~k~  518 (652)
                      ++++...+.+......          ....+++.  +.+|+++....  ..|++++..
T Consensus       326 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          326 NMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             ETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             eccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            9998776666543210          23444553  55777765332  346666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.98  E-value=0.00081  Score=67.42  Aligned_cols=190  Identities=9%  Similarity=-0.042  Sum_probs=117.5

Q ss_pred             eEEEeecccccEEEEec-cCCcceEEee-ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCc
Q psy5768         327 TLFYSDIQKGTINSVFF-NGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKP  404 (652)
Q Consensus       327 ~lywsd~~~~~I~~~~~-~g~~~~~i~~-~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P  404 (652)
                      .+++++...++|+.++. +|.....+-. ....+.++++++.++ ||.+  ..+.|..++.+|.   ..--+.......+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~~G~---~~W~~~~~~~~~~   79 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITRDGR---ELWNIAAPAGCEM   79 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECTTSC---EEEEEECCTTCEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECCCCC---EEEEEcCCCCccc
Confidence            34444444445554444 3322222211 113578888887655 5444  3466777776442   1112221112345


Q ss_pred             eEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-C----CCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC
Q psy5768         405 RGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-D----ITMPNALALDHQAEKLFWGDARLDKIERCDYDGT  479 (652)
Q Consensus       405 ~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-~----l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~  479 (652)
                      .+.++.| .|.+++++.+.. .+|...+.+|.....+-.. .    ..+|.+++++.. +.+++++...++|..++.+|.
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~-~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~G~  156 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHP-STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPNGQ  156 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTT-EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTTSC
T ss_pred             cccEECC-CCCEEEEecCCC-CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC-CCEEEEecCCCEEEEECCCCC
Confidence            5677777 577777776522 3777777777654433211 1    235678888865 456678888899999999987


Q ss_pred             ceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         480 NRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       480 ~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ....+-. . ..|+++.+. ++.+++++...++|..+++.+|+.+-.+.
T Consensus       157 ~~w~~~~-~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          157 LLNSVKL-S-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEEEEC-S-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEEEEC-C-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            6655543 2 578888876 57889999888899999999898776665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.94  E-value=0.0005  Score=71.74  Aligned_cols=142  Identities=10%  Similarity=0.147  Sum_probs=102.2

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCC---------C---CCCeeEEEEECC----CCEEEEEeccCCcceEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTS---------T---LSKISSIAVWPV----KGKMFWSNVTKQVVTIE   65 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~---------~---~~~~~~v~~d~~----~~~lyw~d~~~~~~~I~   65 (652)
                      +++|+|.....|.++|+....-.++.........         .   ...+.+|++++.    ...|||.-  ....+++
T Consensus       172 ~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p--lss~~ly  249 (381)
T 3q6k_A          172 FVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA--GSAIKVY  249 (381)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE--SSCSEEE
T ss_pred             EEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE--CCCCcEE
Confidence            6899999999999999995544444411111100         0   147889999998    78999999  7777899


Q ss_pred             EEE---c-CCC---ccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCC-C----cEEEEEe-CCCCC
Q psy5768          66 MAF---M-DGT---KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG-Q----YRYVLIS-GGVDQ  132 (652)
Q Consensus        66 ~~~---~-dgs---~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg-~----~~~~l~~-~~~~~  132 (652)
                      ++.   + +.+   ..+.+...+......    ++|+|..+++||+++...+.|..-+.++ .    ...+++. ..+..
T Consensus       250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~----~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~  325 (381)
T 3q6k_A          250 SVNTKELKQKGGKLNPELLGNRGKYNDAI----ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF  325 (381)
T ss_dssp             EEEHHHHSSTTCCCCCEEEEECCTTCCEE----EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred             EEEHHHhhCcchhhceEEeeecCCCCCcc----eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence            987   2 232   345555544123334    6889877999999999999999999998 3    3345554 46778


Q ss_pred             ceeEEEcCCCCeEEEEec
Q psy5768         133 PSALAVDPESGYLFWSES  150 (652)
Q Consensus       133 P~~iavd~~~g~lywtd~  150 (652)
                      |.++++|+ +|+||++..
T Consensus       326 pd~~~i~~-~g~Lwv~sn  342 (381)
T 3q6k_A          326 GTDISVDS-KGGLWFMSN  342 (381)
T ss_dssp             EEEEEECT-TSCEEEEEC
T ss_pred             cCeEEECC-CCeEEEEEC
Confidence            99999996 789999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.92  E-value=0.0025  Score=67.75  Aligned_cols=181  Identities=9%  Similarity=0.026  Sum_probs=122.9

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC--CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCC
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND--ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD  413 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~  413 (652)
                      +.|+..+++|.....+......+..+++.+.++.|+++....  ..|.+.++.+..  ... +. .......+++++|..
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~-l~-~~~~~~~~~~~spdg  234 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQ-VA-SFPRHNGAPAFSPDG  234 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEE-EE-CCSSCEEEEEECTTS
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEE-ee-cCCCcccCEEEcCCC
Confidence            567777777766566655556788999999999999987643  589888886532  222 22 233567899999988


Q ss_pred             CEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCc
Q psy5768         414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLH  491 (652)
Q Consensus       414 g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~  491 (652)
                      .+|+++........|+..++.+.....+.. .-.....+++.+++++|+++..  +...|+.+++++...+.+.... ..
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~-~~  312 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG-SQ  312 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS-SE
T ss_pred             CEEEEEEecCCCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC-Cc
Confidence            888887644333479988887765443332 2234568899999998988754  3348999999887655443322 44


Q ss_pred             eeEEEEe--CCEEEEEcCC--CCeEEEEEccCCce
Q psy5768         492 PFDMAVY--GEFIFWTDWV--IHAVLRANKYTGEE  522 (652)
Q Consensus       492 p~glav~--~~~lYwtd~~--~~~I~~~~k~~g~~  522 (652)
                      ..++++.  +.+|+++...  ...|+..+..+++.
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            5566664  5688887654  34788888766654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.91  E-value=0.0021  Score=72.52  Aligned_cols=207  Identities=11%  Similarity=-0.014  Sum_probs=129.4

Q ss_pred             ceEEEEEEEcCCCeEEEeecc---------cccEEEEeccC------CcceEEe-eccCceeeeEEEccCCEEEEEeCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQ---------KGTINSVFFNG------SNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNND  377 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~---------~~~I~~~~~~g------~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~  377 (652)
                      ..+.++++.+..++|+++...         ...|+.+++++      ...+.+. .+.....++++.+.++.|+|+....
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCC
Confidence            346788999999999988643         15799999988      5555555 4455677889999999999987543


Q ss_pred             -------CeEEEEEcCCCC--CccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC--C
Q psy5768         378 -------ATINKIDLDSPK--AQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD--I  446 (652)
Q Consensus       378 -------~~I~~~~~~~~~--~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~--l  446 (652)
                             ..|+++++++..  ...+.+.. .....+..++..|....+|.++.+ ...+|++.++++...+.+....  .
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVATDRT-GWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEEECTT-SSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEEECCC-CCeEEEEEECCCCceeecccccccc
Confidence                   479999987321  01222222 224678889999976644444443 2348998888665544443221  1


Q ss_pred             CC------CceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEE-EEeCCEEEEEcCCC---CeEEEEE
Q psy5768         447 TM------PNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDM-AVYGEFIFWTDWVI---HAVLRAN  516 (652)
Q Consensus       447 ~~------P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~gl-av~~~~lYwtd~~~---~~I~~~~  516 (652)
                      ..      ...+++...+..+|.+..+..+|+.+++++...+.+... .....++ +..++.++++-...   ..|++++
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence            11      235666545554444433555788889987766555332 2344556 67777766654332   3688888


Q ss_pred             ccCCceE
Q psy5768         517 KYTGEEV  523 (652)
Q Consensus       517 k~~g~~~  523 (652)
                      ..+|+..
T Consensus       367 ~~~g~~~  373 (662)
T 3azo_A          367 TVTGRAR  373 (662)
T ss_dssp             TTTCCEE
T ss_pred             CCCCceE
Confidence            7666543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.89  E-value=0.05  Score=59.64  Aligned_cols=469  Identities=13%  Similarity=0.105  Sum_probs=240.8

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY   83 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~   83 (652)
                      +++....+.|.++|++|+...++...       -..+.+++++|....|....   ..+.+......+...... ... .
T Consensus        72 las~~~d~~i~vWd~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~---~d~~~~~~~~~~~~~~~~-~~~-~  139 (577)
T 2ymu_A           72 IASASDDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASAS---DDKTVKLWNRNGQLLQTL-TGH-S  139 (577)
T ss_dssp             EEEEETTSCEEEEETTSCEEEEECCC-------SSCEEEEEECTTSSEEEEEE---TTSCEEEEETTCCEEEEE-CCC-S
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEECC-------CCCEEEEEECCCCCEEEEEc---CCCceeecccccceeeec-cCC-C
Confidence            33334567899999999877776542       35789999999888777655   456676676655533222 222 3


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG  163 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg  163 (652)
                      ..+.    .+++......++... ....+.+...++...... .........++..|...+|+-..  ....|...+.++
T Consensus       140 ~~v~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~w~~~~  211 (577)
T 2ymu_A          140 SSVW----GVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTL-TGHSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRNG  211 (577)
T ss_dssp             SCEE----EEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEE-ECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTS
T ss_pred             Ccee----eeeeecCCccceecc-cccceeccccceeeeeec-cCCCcceeeeeecCCCCEEEEEc--CCCEEEEEeCCC
Confidence            3444    666665555555444 345555555555543333 33345667888888555554433  244666666666


Q ss_pred             CCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCC
Q psy5768         164 KKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVN  243 (652)
Q Consensus       164 ~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~  243 (652)
                      .....+... -.....+++.+.+..|.....+| ..+..   +.....+ .........+..+. |++..+...  ....
T Consensus       212 ~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~d~-~i~~w---~~~~~~~-~~~~~~~~~v~~v~-~~~d~~~l~--~~~~  282 (577)
T 2ymu_A          212 QLLQTLTGH-SSSVRGVAFSPDGQTIASASDDK-TVKLW---NRNGQLL-QTLTGHSSSVNGVA-FRPDGQTIA--SASD  282 (577)
T ss_dssp             CEEEEEECC-SSCEEEEEECTTSSCEEEEETTS-CEEEE---CTTSCEE-EEECCCSSCEEEEE-ECTTSSEEE--EEET
T ss_pred             cEEEEEecC-CCCEEEEEECCCCCEEEEEeCCC-EEEEE---eCCCCEE-EEEecCCCCEEEEE-EcCCCCEEE--EEeC
Confidence            544443322 34567888888777777665553 22211   1111000 00010000111111 111000000  0000


Q ss_pred             CCCCcccceecCCCceEEEeCCccccCCCccc--cc-ceEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEE
Q psy5768         244 NGGCAELCLYNGVSAVCACAHGVVAQDGKSCS--EY-DAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIEL  319 (652)
Q Consensus       244 ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v  319 (652)
                      ++   .+-+....+....-..|.  .....+.  .+ ..+|+.+. ...|+.-++ +...    +..+.  .+...+.++
T Consensus       283 d~---~i~~w~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~-~~~~----~~~~~--~~~~~v~~~  350 (577)
T 2ymu_A          283 DK---TVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQH----LQTLT--GHSSSVWGV  350 (577)
T ss_dssp             TS---CEEEEETTSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE----EEEEC--CCSSCEEEE
T ss_pred             CC---EEEEEeCCCcEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CCCe----eEEEe--CCCCCEEEE
Confidence            00   000000000000000000  0000010  11 12333332 234444444 2211    11221  222456788


Q ss_pred             EEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC
Q psy5768         320 SYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG  399 (652)
Q Consensus       320 ~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~  399 (652)
                      +|.+..+.|.... ..+.|...+.++.....+......+.+|++.+.++.|... ...+.|.+.+..+.   ....+ ..
T Consensus       351 ~~s~~g~~l~~~~-~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~d~~v~~~~~~~~---~~~~~-~~  424 (577)
T 2ymu_A          351 AFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQ---LLQTL-TG  424 (577)
T ss_dssp             EECTTSSEEEEEE-TTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSEEEEECTTCC---EEEEE-EC
T ss_pred             EECCCCCEEEEEe-CCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEE-eCCCEEEEEeCCCC---EEEEe-cC
Confidence            9988777666554 3466777777765444444444578899999888777654 34567777775442   12222 23


Q ss_pred             CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC
Q psy5768         400 QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT  479 (652)
Q Consensus       400 ~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~  479 (652)
                      ......+|++.|...+|..+...   ..|...+++|.....+.. .-.....+++.+.++.|..+. ..+.|...+.+|.
T Consensus       425 ~~~~v~~~~~s~d~~~l~~~~~d---~~v~~w~~~~~~~~~~~~-~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~~~  499 (577)
T 2ymu_A          425 HSSSVWGVAFSPDDQTIASASDD---KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ  499 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT---SEEEEEETTSCEEEEEEC-CSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSC
T ss_pred             CCCCeEEEEECCCCCEEEEEcCC---CEEEEEECCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCCCC
Confidence            34567889999977777665443   256656676654444432 223567899998877776654 3457787888887


Q ss_pred             ceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         480 NRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       480 ~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ..+.+.. ......+|++.  +.+|.-. ...+.|..-+. +|+....+.
T Consensus       500 ~~~~~~~-h~~~v~~l~~s~dg~~l~s~-~~dg~v~lwd~-~~~~~~~~~  546 (577)
T 2ymu_A          500 LLQTLTG-HSSSVRGVAFSPDGQTIASA-SDDKTVKLWNR-NGQLLQTLT  546 (577)
T ss_dssp             EEEEEEC-CSSCEEEEEECTTSSCEEEE-ETTSEEEEECT-TSCEEEEEE
T ss_pred             EEEEEeC-CCCCEEEEEEcCCCCEEEEE-ECcCEEEEEeC-CCCEEEEEc
Confidence            6666543 22456777775  2344433 34455655553 555444443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.88  E-value=0.0074  Score=68.54  Aligned_cols=317  Identities=8%  Similarity=0.007  Sum_probs=166.4

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+.++++++. +++.++-    .+.|+.+++.+.....+...  -..+.    .+++...++.|+++.  .+.|.+.++
T Consensus        82 ~~v~~~~~spd-~~~~~~~----~~~i~~~d~~~~~~~~l~~~--~~~~~----~~~~SpdG~~la~~~--~~~i~v~~~  148 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT----QGGLVGFDMLARKVTYLFDT--NEETA----SLDFSPVGDRVAYVR--NHNLYIARG  148 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE----TTEEEEEETTTTEEEEEECC--TTCCT----TCEECTTSSEEEEEE--TTEEEEEEC
T ss_pred             cCceeEEECCC-CeEEEEE----CCEEEEEECCCCceEEccCC--ccccc----CCcCCCCCCEEEEEE--CCeEEEEec
Confidence            46889999998 8887775    27899999887654444332  23456    888888787887764  478999988


Q ss_pred             CC-----CcEEEEEeCCCC--------------CceeEEEcCCCCeEEEEecC--CCCeEEEEeCCCCCcEEEEeecccC
Q psy5768         118 TG-----QYRYVLISGGVD--------------QPSALAVDPESGYLFWSESG--KIPLIARAGLDGKKQTILAQEIIMP  176 (652)
Q Consensus       118 dg-----~~~~~l~~~~~~--------------~P~~iavd~~~g~lywtd~~--~~~~I~~~~ldg~~~~~~~~~~~~~  176 (652)
                      ++     ...+.+......              .+.+++..|...+|+++...  ..+.+............ ..  ...
T Consensus       149 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~-~~--~~y  225 (706)
T 2z3z_A          149 GKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES-KP--LYY  225 (706)
T ss_dssp             BCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE-EE--ECC
T ss_pred             CcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce-EE--eeC
Confidence            76     433333322211              25889999977778776532  12233333333222211 11  111


Q ss_pred             ceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCC
Q psy5768         177 IKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGV  256 (652)
Q Consensus       177 p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~  256 (652)
                      |..= -+....+||+.|.+++..+.+.........+           ..+ .|+                        | 
T Consensus       226 ~~~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-----------~~~-~~s------------------------p-  267 (706)
T 2z3z_A          226 PMAG-TPSHHVTVGIYHLATGKTVYLQTGEPKEKFL-----------TNL-SWS------------------------P-  267 (706)
T ss_dssp             CBTT-SCCCEEEEEEEETTTTEEEECCCCSCTTCEE-----------EEE-EEC------------------------T-
T ss_pred             CCCC-CCCCeeEEEEEECCCCceEeeccCCCCceeE-----------eeE-EEE------------------------C-
Confidence            1100 0113467888999876543321100000000           000 000                        0 


Q ss_pred             CceEEEeCCccccCCCcccccceEEEEee------ecceeEEecCCCCCCCCCceeee-ecc--ccceEEEEEEEc--CC
Q psy5768         257 SAVCACAHGVVAQDGKSCSEYDAFIMYSR------VNRIDSIHMTDKSDLNSPFESIR-NST--MMKNIIELSYDY--KR  325 (652)
Q Consensus       257 ~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~------~~~i~~i~l~~~~~~~~p~~~~~-~~~--~~~~~~~v~~D~--~~  325 (652)
                                   ||       .+|+++.      ...|+.+++..+...    ..+. ...  ....+..+.|.+  ..
T Consensus       268 -------------dg-------~~l~~~~~~~~~~~~~v~~~d~~~g~~~----~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          268 -------------DE-------NILYVAEVNRAQNECKVNAYDAETGRFV----RTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             -------------TS-------SEEEEEEECTTSCEEEEEEEETTTCCEE----EEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             -------------CC-------CEEEEEEeCCCCCeeEEEEEECCCCcee----eEEEEccCCCeECccCCceeecCCCC
Confidence                         11       1112111      013334443111010    1110 000  000012356666  44


Q ss_pred             CeEEEeecc-cccEEEEeccCCcceEEeeccCceee-eEEEccCCEEEEEeCCCC----eEEEEEcCCCCCccEEEEEeC
Q psy5768         326 KTLFYSDIQ-KGTINSVFFNGSNHRVLLERQGSVEG-LAYEYVHNYLYWTCNNDA----TINKIDLDSPKAQRIVVVRLG  399 (652)
Q Consensus       326 ~~lywsd~~-~~~I~~~~~~g~~~~~i~~~~~~~~g-lAvDw~~~~LYwtd~~~~----~I~~~~~~~~~~~~~~~~~~~  399 (652)
                      +.||.++.. ..+|+.++.++.....+..+...+.+ +++++.++.||++....+    .|+++++.+..  .+.   +.
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~---l~  398 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKD---LT  398 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEE---SC
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--cee---cc
Confidence            444444332 24677777666544444444334555 799999999999887654    78888876532  122   23


Q ss_pred             CCCCceEEEEeCCCCEEEEEecCCC-CCceEEEeecCCC
Q psy5768         400 QHDKPRGIDIDSCDSRIYWTNWNSH-LPSIQRAFFSGFG  437 (652)
Q Consensus       400 ~~~~P~~Iavdp~~g~Lywtd~~~~-~~~I~r~~ldG~~  437 (652)
                      ......++++.|...+|.++-.... .+.|+..++++..
T Consensus       399 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          399 PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            3455778999998877777643322 3468888887765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.88  E-value=0.00077  Score=66.55  Aligned_cols=196  Identities=14%  Similarity=0.079  Sum_probs=120.1

Q ss_pred             EEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecc---cccEEEEeccCCcceEEeeccC
Q psy5768         280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQ---KGTINSVFFNGSNHRVLLERQG  356 (652)
Q Consensus       280 ~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~---~~~I~~~~~~g~~~~~i~~~~~  356 (652)
                      +|+++....|+..++......    ..+........+..+++.+..+.|+++...   ...|+.+++++.....+. ...
T Consensus        55 ~l~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~  129 (297)
T 2ojh_A           55 YLLLNSEGLLYRLSLAGDPSP----EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT-KNL  129 (297)
T ss_dssp             EEEEEETTEEEEEESSSCCSC----EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC-SSS
T ss_pred             EEEEEcCCeEEEEeCCCCCCc----eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee-cCC
Confidence            455555666777776320221    111111111334567888888888887732   467888887765544433 233


Q ss_pred             ceeeeEEEccCCEEEEEeCCCC--eEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDA--TINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~--~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      .+..+++.+.++.|+++....+  .|+.+++.+..   .. ........+..++++|...+|+++.......+|+...++
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~  205 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ET-RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD  205 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EE-ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ce-EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC
Confidence            4778889888999987765555  45555554321   22 112334677899999988888887643333578888777


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCC----------CCeEEEEecCCCceEEEe
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDAR----------LDKIERCDYDGTNRIVLS  485 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~----------~~~I~~~~ldG~~~~~l~  485 (652)
                      +.....+.. .-.....+++++.+++|+++...          ...|...++++...+.+.
T Consensus       206 ~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          206 GSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             SSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             CCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            765444332 12234578888889988887542          256888888876654443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.86  E-value=0.021  Score=64.80  Aligned_cols=352  Identities=9%  Similarity=0.013  Sum_probs=188.1

Q ss_pred             eEEEEECCCCEEEEEeccCCcceEEEEEcCCCcc--EEEEeCCCc---------------CCccCCCCcEEEEccCCcEE
Q psy5768          41 SSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR--ETVVSQKKY---------------PAVTACNLHIAVDWIAQNIY  103 (652)
Q Consensus        41 ~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~--~~v~~~~~~---------------~~p~~~~~~lavDw~~~~lY  103 (652)
                      .++.+.  +++++...  . .+ | .+++.....  +.+.....+               ..+.    .+++... +.+.
T Consensus        29 ~~~~w~--g~~~~~~~--~-~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~----~~~~spd-~~~~   96 (706)
T 2z3z_A           29 VGLQWM--GDNYVFIE--G-DD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF----RTLDAGR-GLVV   96 (706)
T ss_dssp             TTCEEE--TTEEEEEE--T-TE-E-EEEC-------CEEEEHHHHHTTC-----------CCCE----EEEETTT-TEEE
T ss_pred             CCCcCc--CCeEEEEe--C-Cc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce----eEEECCC-CeEE
Confidence            445566  55555555  2 23 7 777654433  444432112               3466    8888776 6666


Q ss_pred             EEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC-----CCcEEEEeecc----
Q psy5768         104 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-----KKQTILAQEII----  174 (652)
Q Consensus       104 ~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg-----~~~~~~~~~~~----  174 (652)
                      ++.  .+.|.+.++++.....+... -..+..+++.|...+|+++.   ...|...++++     .....+.....    
T Consensus        97 ~~~--~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~SpdG~~la~~~---~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~  170 (706)
T 2z3z_A           97 LFT--QGGLVGFDMLARKVTYLFDT-NEETASLDFSPVGDRVAYVR---NHNLYIARGGKLGEGMSRAIAVTIDGTETLV  170 (706)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEECC-TTCCTTCEECTTSSEEEEEE---TTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred             EEE--CCEEEEEECCCCceEEccCC-cccccCCcCCCCCCEEEEEE---CCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence            664  38999999987655555443 34678899999777888764   35788888876     44443322221    


Q ss_pred             ----------cCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCC
Q psy5768         175 ----------MPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNN  244 (652)
Q Consensus       175 ----------~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~n  244 (652)
                                ..+.+++..+.+++|++..++....+.+..           .......+ .+.-+               
T Consensus       171 ~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~-----------~~~~~~~~-~~~~~---------------  223 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPI-----------VDYHPLEA-ESKPL---------------  223 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEE-----------EECCSSSC-EEEEE---------------
T ss_pred             cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEe-----------eccCCCCC-ceEEe---------------
Confidence                      124788888888888886654332211110           00000000 00000               


Q ss_pred             CCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeee-ccccceEEEEEEEc
Q psy5768         245 GGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRN-STMMKNIIELSYDY  323 (652)
Q Consensus       245 g~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~-~~~~~~~~~v~~D~  323 (652)
                                          -|.. .|.  .        .....|+.+++..+ ..    ..+.. ...-..+..+++.+
T Consensus       224 --------------------~y~~-~g~--~--------~~~~~l~~~d~~~~-~~----~~~~~~~~~~~~~~~~~~sp  267 (706)
T 2z3z_A          224 --------------------YYPM-AGT--P--------SHHVTVGIYHLATG-KT----VYLQTGEPKEKFLTNLSWSP  267 (706)
T ss_dssp             --------------------CCCB-TTS--C--------CCEEEEEEEETTTT-EE----EECCCCSCTTCEEEEEEECT
T ss_pred             --------------------eCCC-CCC--C--------CCeeEEEEEECCCC-ce----EeeccCCCCceeEeeEEEEC
Confidence                                0000 000  0        00122333343111 10    01100 01113356788888


Q ss_pred             CCCeEEEeeccc----ccEEEEeccCC-cceEEee-ccC----ceeeeEEEc--cCCEEEEEeC-CCCeEEEEEcCCCCC
Q psy5768         324 KRKTLFYSDIQK----GTINSVFFNGS-NHRVLLE-RQG----SVEGLAYEY--VHNYLYWTCN-NDATINKIDLDSPKA  390 (652)
Q Consensus       324 ~~~~lywsd~~~----~~I~~~~~~g~-~~~~i~~-~~~----~~~glAvDw--~~~~LYwtd~-~~~~I~~~~~~~~~~  390 (652)
                      ..+.|+++....    ..|+.+++.+. ..+.+.. ...    .+.++++.+  .++.||.++. +...|+.++.++.  
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~--  345 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR--  345 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC--
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC--
Confidence            888888864332    46788887655 4444442 111    135678877  6665554433 2346777765442  


Q ss_pred             ccEEEEEeCCCCCc-eE-EEEeCCCCEEEEEecCCC--CCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeC
Q psy5768         391 QRIVVVRLGQHDKP-RG-IDIDSCDSRIYWTNWNSH--LPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDA  466 (652)
Q Consensus       391 ~~~~~~~~~~~~~P-~~-Iavdp~~g~Lywtd~~~~--~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~  466 (652)
                       ...  .+.....+ .+ ++++|..+.||++.....  ...|++.++++...+.+.  .......+++.+++++|.++-.
T Consensus       346 -~~~--~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          346 -LIR--QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT--PESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             -EEE--ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC--CSSSEEEEEECTTSSEEEEEEE
T ss_pred             -EEE--ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc--CCCceEEEEECCCCCEEEEEec
Confidence             122  22233333 34 799998889999876532  248888888776544432  2234567889888888877632


Q ss_pred             C---CCeEEEEecCCCc
Q psy5768         467 R---LDKIERCDYDGTN  480 (652)
Q Consensus       467 ~---~~~I~~~~ldG~~  480 (652)
                      .   ...|+..++++..
T Consensus       421 ~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          421 SPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSSCSCEEEEEESSSCE
T ss_pred             CCCCCcEEEEEECCCCe
Confidence            2   2568889988765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.84  E-value=0.017  Score=65.89  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             ceeeeEEEccCCEEEEEeC----CCCeEEEEEcCCCCCccEEEEEeCCCC---CceEEEEeCCCCEEEEEecCCCCCceE
Q psy5768         357 SVEGLAYEYVHNYLYWTCN----NDATINKIDLDSPKAQRIVVVRLGQHD---KPRGIDIDSCDSRIYWTNWNSHLPSIQ  429 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~----~~~~I~~~~~~~~~~~~~~~~~~~~~~---~P~~Iavdp~~g~Lywtd~~~~~~~I~  429 (652)
                      .+..+++ +.++.|+++..    ....|.++++.+..  ...++......   ...++++.|... ++++.......+|+
T Consensus       288 ~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~  363 (741)
T 2ecf_A          288 YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ--QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLY  363 (741)
T ss_dssp             EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEE
T ss_pred             EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEE
Confidence            5678899 89999988754    23467788875432  33333221111   335789999655 55554332234888


Q ss_pred             EEeecCCCceEEEEcCCCCCceE-EEecCCCEEEEEeCC----CCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEE
Q psy5768         430 RAFFSGFGTESIITTDITMPNAL-ALDHQAEKLFWGDAR----LDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFI  502 (652)
Q Consensus       430 r~~ldG~~~~~l~~~~l~~P~gl-aiD~~~~~LYw~D~~----~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~l  502 (652)
                      +..++|. .+.+.. .-.....+ ++++.+++||++-..    .-.|+.++++|...+.+...  ...+.+++.  +.+|
T Consensus       364 ~~~~~~~-~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~--~~~~~~~~spdg~~l  439 (741)
T 2ecf_A          364 RIDSKGK-AAALTH-GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKA--PGMHSASFARNASVY  439 (741)
T ss_dssp             EECSSSC-EEESCC-SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCS--CSEEEEEECTTSSEE
T ss_pred             EEcCCCC-eeeeee-cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccC--CCceEEEECCCCCEE
Confidence            8888876 333322 21223355 589999999887543    34688998888766655441  233444443  3455


Q ss_pred             EEE
Q psy5768         503 FWT  505 (652)
Q Consensus       503 Ywt  505 (652)
                      .++
T Consensus       440 ~~~  442 (741)
T 2ecf_A          440 VDS  442 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.82  E-value=0.035  Score=55.63  Aligned_cols=309  Identities=12%  Similarity=0.066  Sum_probs=164.0

Q ss_pred             CeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC
Q psy5768          39 KISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT  118 (652)
Q Consensus        39 ~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d  118 (652)
                      .+.++++.+.+..+.++.   ....+................. -..+.    .+++...++.|+.+.  .+.|.+.+++
T Consensus        11 ~v~~~~~s~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h-~~~v~----~~~~~~~~~~l~~~~--dg~i~iw~~~   80 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPF---PPDALIGPGIPRHARQINTLNH-GEVVC----AVTISNPTRHVYTGG--KGCVKVWDIS   80 (337)
T ss_dssp             ECCEEEECSSSCEEECCC---CTTSSSSTTCCSEEEEEEEECC-SSCCC----EEEECSSSSEEEEEC--BSEEEEEETT
T ss_pred             ceeEEEECCCCCEEEeec---CCCcEeccccCCccccceeccC-CCceE----EEEEecCCcEEEEcC--CCeEEEEECC
Confidence            567889998877776554   2222221111111111111223 34566    888887555555443  7889999886


Q ss_pred             CCc----EEEEEe-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEE--EeecccCceeEEEeccCCEEEE
Q psy5768         119 GQY----RYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL--AQEIIMPIKDITLDLKFFSAFY  191 (652)
Q Consensus       119 g~~----~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~--~~~~~~~p~gl~lD~~~~~ly~  191 (652)
                      ...    ...+.. ........+++.|...+|+....  ...|...+++.......  ..........+++.+.++.|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES--SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC--CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence            432    111111 23356788999996666665543  45788877776543222  2222345678888887777777


Q ss_pred             EeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCC
Q psy5768         192 RNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDG  271 (652)
Q Consensus       192 ~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg  271 (652)
                      ...+| ..+..-...   ...             +..+..           ..+....++..         +      + 
T Consensus       159 ~~~dg-~v~~~d~~~---~~~-------------~~~~~~-----------~~~~i~~~~~~---------~------~-  194 (337)
T 1gxr_A          159 CCSDG-NIAVWDLHN---QTL-------------VRQFQG-----------HTDGASCIDIS---------N------D-  194 (337)
T ss_dssp             EETTS-CEEEEETTT---TEE-------------EEEECC-----------CSSCEEEEEEC---------T------T-
T ss_pred             EeCCC-cEEEEeCCC---Cce-------------eeeeec-----------ccCceEEEEEC---------C------C-
Confidence            66663 332221110   000             001100           00000001110         0      1 


Q ss_pred             CcccccceEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceE
Q psy5768         272 KSCSEYDAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRV  350 (652)
Q Consensus       272 ~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~  350 (652)
                            ..+|+.+. ...|+..++... .   +...+.   ....+..++|.+..+.|+... ..+.|+..++.......
T Consensus       195 ------~~~l~~~~~dg~i~~~d~~~~-~---~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          195 ------GTKLWTGGLDNTVRSWDLREG-R---QLQQHD---FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             ------SSEEEEEETTSEEEEEETTTT-E---EEEEEE---CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEE
T ss_pred             ------CCEEEEEecCCcEEEEECCCC-c---eEeeec---CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEE
Confidence                  12233322 334555555211 1   111221   124467888888777666655 35778888877655444


Q ss_pred             EeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecC
Q psy5768         351 LLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN  422 (652)
Q Consensus       351 i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~  422 (652)
                      +......+.++++.+.++.|+.+ ...+.|.+.++....    .+........+.+++++|...+|+.+...
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVST-GKDNLLNAWRTPYGA----SIFQSKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC----EEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EcCCccceeEEEECCCCCEEEEe-cCCCcEEEEECCCCe----EEEEecCCCcEEEEEECCCCCEEEEecCC
Confidence            43445578899999877766544 456889888876532    22333345778899999977777666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.71  E-value=0.01  Score=67.37  Aligned_cols=356  Identities=9%  Similarity=0.005  Sum_probs=191.2

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcC--CccCCCCcEEEEccCCcEEEEeCC-------
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP--AVTACNLHIAVDWIAQNIYWSDPK-------  108 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~--~p~~~~~~lavDw~~~~lY~~d~~-------  108 (652)
                      ..+.++++.+.+..+| ++   ..+.|+.+++.+.....++......  .+.    ++++...++.|.++...       
T Consensus        17 ~~~~~~~~spdg~~~~-~~---~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~----~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIY-RE---QKGTVRLWNVETNTSTVLIEGKKIESLRAI----RYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCCCCCBSSSSCBCC-CC---SSSCEEEBCGGGCCCEEEECTTTTTTTTCS----EEEECTTSSEEEEEESCCCCSSSC
T ss_pred             ccccccEEcCCCcEEE-Ee---CCCCEEEEECCCCcEEEEeccccccccccc----eEEECCCCCEEEEEecCccceeec
Confidence            3567888988766554 33   4568999988766555655543111  366    89998878877776432       


Q ss_pred             -CCEEEEEEcCCCcEEEEEeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecc-----------
Q psy5768         109 -ENVIEVARLTGQYRYVLISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEII-----------  174 (652)
Q Consensus       109 -~~~I~v~~~dg~~~~~l~~~~--~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~-----------  174 (652)
                       .+.|.+.++++...+.+....  ...+..+++.|...+|.++..   ..|...++++.....+....-           
T Consensus        89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred             ceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence             267888898876554443221  113678899997767877754   478888888766655543321           


Q ss_pred             -------cCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCC
Q psy5768         175 -------MPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGC  247 (652)
Q Consensus       175 -------~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~C  247 (652)
                             ....+++..+.+++|++...+++..+......           ... .              ..+-.      
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~-----------~~~-~--------------~~~~~------  213 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT-----------YTG-S--------------IYPTV------  213 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC-----------CSS-S--------------SSCCC------
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec-----------cCC-c--------------CCCcc------
Confidence                   12367888888888887665544332221100           000 0              00000      


Q ss_pred             cccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeec----cccceEEEEEEEc
Q psy5768         248 AELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNS----TMMKNIIELSYDY  323 (652)
Q Consensus       248 s~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~----~~~~~~~~v~~D~  323 (652)
                      .++.              | ..+|..  .        ....|+..++..+ ...   ..+...    .....+..+++.+
T Consensus       214 ~~~~--------------~-~~~G~~--~--------~~~~l~~~d~~~~-~~~---~~l~~~~~~~~~~~~~~~~~~Sp  264 (723)
T 1xfd_A          214 KPYH--------------Y-PKAGSE--N--------PSISLHVIGLNGP-THD---LEMMPPDDPRMREYYITMVKWAT  264 (723)
T ss_dssp             EEEE--------------C-CBTTSC--C--------CEEEEEEEESSSS-CCC---EECCCCCCGGGSSEEEEEEEESS
T ss_pred             eecc--------------C-CCCCCC--C--------CeeEEEEEECCCC-cee---EEeeCCccCCCccceeEEEEEeC
Confidence            0000              0 001210  0        0123333343111 100   111110    0123456778887


Q ss_pred             CCCeEEEe-ec--ccccEEEEeccCCcceEEee-cc-Cc----eeeeEEEccCCEEEEE-eCCCC------eEEEEE-cC
Q psy5768         324 KRKTLFYS-DI--QKGTINSVFFNGSNHRVLLE-RQ-GS----VEGLAYEYVHNYLYWT-CNNDA------TINKID-LD  386 (652)
Q Consensus       324 ~~~~lyws-d~--~~~~I~~~~~~g~~~~~i~~-~~-~~----~~glAvDw~~~~LYwt-d~~~~------~I~~~~-~~  386 (652)
                      ..+.|+.. +.  ....|+..++.+.....+.. .. ..    +..+++.+.++.|+++ ....+      .|+.++ ..
T Consensus       265 Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~  344 (723)
T 1xfd_A          265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP  344 (723)
T ss_dssp             SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred             CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC
Confidence            66666333 33  23467777876654444432 11 11    2478999889988886 44444      577776 33


Q ss_pred             CCCCccEEEEEeCCCCCceE-EEEeCCCCEEEEEecCC--CCCceEEEeecCCCceEEEEcC---CCCCceEEEecCCCE
Q psy5768         387 SPKAQRIVVVRLGQHDKPRG-IDIDSCDSRIYWTNWNS--HLPSIQRAFFSGFGTESIITTD---ITMPNALALDHQAEK  460 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~-Iavdp~~g~Lywtd~~~--~~~~I~r~~ldG~~~~~l~~~~---l~~P~glaiD~~~~~  460 (652)
                      +........+. ........ ++++|..++||++....  ...+|++..++|......+...   -.....+++.+++++
T Consensus       345 ~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          345 NSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             CSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             CCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence            32100011111 11122233 68999999998876542  2347999888876332222221   223567888888887


Q ss_pred             EEEEeC
Q psy5768         461 LFWGDA  466 (652)
Q Consensus       461 LYw~D~  466 (652)
                      |.+.-.
T Consensus       424 l~~~~~  429 (723)
T 1xfd_A          424 FLLKCE  429 (723)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            776533

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.69  E-value=1.8e-05  Score=57.88  Aligned_cols=40  Identities=25%  Similarity=0.613  Sum_probs=34.2

Q ss_pred             CCCCCCCC--------CCCCcccceecCCCceEEEeCCc-cccCCCccc
Q psy5768         236 GTNPCGVN--------NGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~--------ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      ++++|...        ++.|+|.|+..+++|+|.|+.|| +..|+++|.
T Consensus         3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccC
Confidence            57889764        47899999999889999999999 567999996

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.66  E-value=0.033  Score=57.58  Aligned_cols=124  Identities=7%  Similarity=-0.048  Sum_probs=71.8

Q ss_pred             eEEEEEEEcCCCeEEEeecc--c--ccEEEEeccCCcceEEeeccCceeeeEEEc-cCCEEEEEeC--------------
Q psy5768         315 NIIELSYDYKRKTLFYSDIQ--K--GTINSVFFNGSNHRVLLERQGSVEGLAYEY-VHNYLYWTCN--------------  375 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~--~--~~I~~~~~~g~~~~~i~~~~~~~~glAvDw-~~~~LYwtd~--------------  375 (652)
                      .+..++|.+..++|+++...  .  +.|+.+++.+...+.+.. ..... +++.+ .++.|+.+..              
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCSEE-EEEECSSSSEEEEEECCC----------CC
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCCCC-CCccCCCCceEEEecCCcceeecccccccc
Confidence            35567888877777776432  2  338888876554444332 11222 67766 6676655331              


Q ss_pred             -CCCeEEEEEcCCCCCccEEEEEeCCCC----------CceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE
Q psy5768         376 -NDATINKIDLDSPKAQRIVVVRLGQHD----------KPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT  443 (652)
Q Consensus       376 -~~~~I~~~~~~~~~~~~~~~~~~~~~~----------~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~  443 (652)
                       ....|.++++.+..  .+.+.. ....          .+..+++.|...+|+++......+.|++..+++...+++..
T Consensus       317 ~~~~~i~~~d~~~~~--~~~l~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~~  392 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKS--AQKLCK-HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLEHH  392 (396)
T ss_dssp             CCCCEEEEEETTTTB--CCEEEE-CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-----
T ss_pred             CCCCcEEEEecccCc--eEEccC-CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccccc
Confidence             34678888876532  222222 1111          24567889987788887654445689999998887766543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.50  E-value=0.35  Score=58.50  Aligned_cols=475  Identities=9%  Similarity=0.015  Sum_probs=226.9

Q ss_pred             CCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCcc
Q psy5768           9 TQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVT   87 (652)
Q Consensus         9 ~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~   87 (652)
                      ..+.|.+++.. ++...++..       .-..+.++++++.++.|....   ..+.|..+++........+... ...+.
T Consensus       635 ~d~~i~vw~~~~~~~~~~~~~-------h~~~v~~~~~s~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~-~~~v~  703 (1249)
T 3sfz_A          635 ADKTLQVFKAETGEKLLDIKA-------HEDEVLCCAFSSDDSYIATCS---ADKKVKIWDSATGKLVHTYDEH-SEQVN  703 (1249)
T ss_dssp             TTSCEEEEETTTCCEEEEECC-------CSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECC-SSCEE
T ss_pred             CCCeEEEEECCCCCEEEEecc-------CCCCEEEEEEecCCCEEEEEe---CCCeEEEEECCCCceEEEEcCC-CCcEE
Confidence            55678888876 444444443       235789999999888887665   5678999988754333333444 44556


Q ss_pred             CCCCcEEEEccCC-cEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc
Q psy5768          88 ACNLHIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ  166 (652)
Q Consensus        88 ~~~~~lavDw~~~-~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~  166 (652)
                          .+++....+ .+..+-+..+.|.+.+++.......+.+.......+++.|...+|+-...  .+.|..-++.....
T Consensus       704 ----~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          704 ----CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--DGTLRLWDVRSANE  777 (1249)
T ss_dssp             ----EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--SSEEEEEEGGGTEE
T ss_pred             ----EEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--CCeEEEEeCCCCcc
Confidence                777755433 45555556778999998766555444444467789999996555554432  34566655543322


Q ss_pred             E-EEEeec------------ccCceeEEEeccCCEEEEE--------eCCCCcEEEEEe-cCCCCceEEEeecCCC----
Q psy5768         167 T-ILAQEI------------IMPIKDITLDLKFFSAFYR--------NLSKGNIHIISL-SNLSDVSTISMKPYGD----  220 (652)
Q Consensus       167 ~-~~~~~~------------~~~p~gl~lD~~~~~ly~~--------d~~g~~~~~i~~-~~~~~~~~~~~~~~~~----  220 (652)
                      . .+....            -..+..+++.+.+..|...        +...+....... ........+...+...    
T Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  857 (1249)
T 3sfz_A          778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI  857 (1249)
T ss_dssp             EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred             cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence            1 111000            1134455666555555443        222222111111 0001111111111000    


Q ss_pred             -CCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEe-CCcccc-C---C--Cccc--c---------cceEE
Q psy5768         221 -SYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACA-HGVVAQ-D---G--KSCS--E---------YDAFI  281 (652)
Q Consensus       221 -~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~-~G~l~~-d---g--~~C~--~---------~~~~L  281 (652)
                       ..-..|++|+..............+.-..++..+.+.+...+. .|.+.. +   +  ....  .         ....+
T Consensus       858 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  937 (1249)
T 3sfz_A          858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV  937 (1249)
T ss_dssp             ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred             EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence             0111244443321100000000000011111111111111111 111000 0   0  0000  0         00000


Q ss_pred             EEe-eecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCcee
Q psy5768         282 MYS-RVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVE  359 (652)
Q Consensus       282 l~s-~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~  359 (652)
                      +.. ....+..... .  . . .....    ....+.++++.+..+.+..... .+.|...++......... .....+.
T Consensus       938 ~~~~~~~~~~~~~~-~--~-~-~~~~~----~~~~i~~~~~sp~g~~l~~g~~-~g~i~i~d~~~~~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A          938 LAVDNIRGLQLIAG-K--T-G-QIDYL----PEAQVSCCCLSPHLEYVAFGDE-DGAIKIIELPNNRVFSSGVGHKKAVR 1007 (1249)
T ss_dssp             EEEESSSSEEEEEE-S--S-C-CEEEE----CCSCEEEEEECTTSSEEEEEET-TSCCEEEETTTTSCEEECCCCSSCCC
T ss_pred             EEecCCcceEEEec-C--c-c-eEEEc----ccCcEEEEEEcCCCCEEEEEcC-CCCEEEEEcCCCceeeecccCCCceE
Confidence            000 0111111111 0  0 0 00001    1134678888888777766654 477887776644333222 3445678


Q ss_pred             eeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCce
Q psy5768         360 GLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTE  439 (652)
Q Consensus       360 glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~  439 (652)
                      ++++.+.++.|..+ +..+.|.+.++...    ..+..........++++.| .+.++.....   +.|...++......
T Consensus      1008 ~l~~s~dg~~l~s~-~~dg~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d---g~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A         1008 HIQFTADGKTLISS-SEDSVIQVWNWQTG----DYVFLQAHQETVKDFRLLQ-DSRLLSWSFD---GTVKVWNVITGRIE 1078 (1249)
T ss_dssp             CEEECSSSSCEEEE-CSSSBEEEEETTTT----EEECCBCCSSCEEEEEECS-SSEEEEEESS---SEEEEEETTTTCCC
T ss_pred             EEEECCCCCEEEEE-cCCCEEEEEECCCC----ceEEEecCCCcEEEEEEcC-CCcEEEEECC---CcEEEEECCCCcee
Confidence            89999887776644 55678888887642    2222234446778889988 4555444332   25666666444333


Q ss_pred             EEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEc
Q psy5768         440 SIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       440 ~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k  517 (652)
                      ..+.........+++.+.+..|..+. ..+.|...+++.......+........++++.  +.+|.... ..+.|..-+.
T Consensus      1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s-~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1079 RDFTCHQGTVLSCAISSDATKFSSTS-ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD-DNGEIRIWNV 1156 (1249)
T ss_dssp             EEEECCSSCCCCEEECSSSSSCEEEC-CSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE-TTSCCCEEES
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEC
Confidence            33333344567899998877766553 34567777776443222222222334667764  33444443 3444544455


Q ss_pred             cCCc
Q psy5768         518 YTGE  521 (652)
Q Consensus       518 ~~g~  521 (652)
                      .+|+
T Consensus      1157 ~~~~ 1160 (1249)
T 3sfz_A         1157 SDGQ 1160 (1249)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            4444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.013  Score=61.21  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC----CccEEEEeCCCc
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG----TKRETVVSQKKY   83 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg----s~~~~v~~~~~~   83 (652)
                      ...+.|++++++..........    ...-..+.++++++....|+...   ..+.|+.++++.    ......+... .
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~---~dg~v~vw~~~~~~~~~~~~~~~~~h-~  113 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIAS----LQVDSKFNDLDWSHNNKIIAGAL---DNGSLELYSTNEANNAINSMARFSNH-S  113 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCC----CCCSSCEEEEEECSSSSCEEEEE---SSSCEEEECCSSTTSCCCEEEECCCS-S
T ss_pred             CCCCeEEEEEccCCCCCcEEEE----EecCCceEEEEECCCCCeEEEEc---cCCeEEEeecccccccccchhhccCC-c
Confidence            3456788888775432111100    11235789999999888887665   457888888775    2122223333 4


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc------EEEEE---eCCCCCceeEEEcCCCCeEEEEecCCCC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY------RYVLI---SGGVDQPSALAVDPESGYLFWSESGKIP  154 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~------~~~l~---~~~~~~P~~iavd~~~g~lywtd~~~~~  154 (652)
                      ..+.    .+++....++++++-...+.|.+.++....      .....   .........+++.|..+.++.+-. ...
T Consensus       114 ~~v~----~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg  188 (416)
T 2pm9_A          114 SSVK----TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-SSN  188 (416)
T ss_dssp             SCCC----EEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-SSS
T ss_pred             cceE----EEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-CCC
Confidence            4566    888877646666666677888888886543      21111   112245677888876455555532 233


Q ss_pred             eEEEEeCC
Q psy5768         155 LIARAGLD  162 (652)
Q Consensus       155 ~I~~~~ld  162 (652)
                      .|...++.
T Consensus       189 ~v~iwd~~  196 (416)
T 2pm9_A          189 FASIWDLK  196 (416)
T ss_dssp             CEEEEETT
T ss_pred             CEEEEECC
Confidence            45554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.42  E-value=0.3  Score=55.89  Aligned_cols=359  Identities=11%  Similarity=0.022  Sum_probs=190.6

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+.+|+++|.+..|....   ..+.|..++.........+... -..+.    ++++...++.|.... ..+.|.+.++
T Consensus        14 ~~v~~i~~sp~~~~la~~~---~~g~v~iwd~~~~~~~~~~~~~-~~~v~----~~~~s~~~~~l~~~~-~dg~i~vw~~   84 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTL---YSGRVEIWNYETQVEVRSIQVT-ETPVR----AGKFIARKNWIIVGS-DDFRIRVFNY   84 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEE---TTSEEEEEETTTTEEEEEEECC-SSCEE----EEEEEGGGTEEEEEE-TTSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEe---CCCEEEEEECCCCceEEEEecC-CCcEE----EEEEeCCCCEEEEEe-CCCeEEEEEC
Confidence            5789999999988888776   5678888887654333333434 45567    889988666666554 4789999998


Q ss_pred             CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCC-cEEEEeecccCceeEEEec-cCCEEEEEeCC
Q psy5768         118 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEIIMPIKDITLDL-KFFSAFYRNLS  195 (652)
Q Consensus       118 dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~-~~~~~~~~~~~p~gl~lD~-~~~~ly~~d~~  195 (652)
                      +.......+.......+.++..|...+|+....  ...|...+++... ........-.....+++.+ .++.|+....+
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEET--TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC--CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            755444444444567889999997667765543  4567777776542 2222222234567778877 34444444444


Q ss_pred             CCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         196 KGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       196 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                       +..+..-.........  +....                        .++.         ...+..|.           
T Consensus       163 -g~v~vwd~~~~~~~~~--~~~~~------------------------~~~v---------~~~~~~~~-----------  195 (814)
T 3mkq_A          163 -RTVKVWSLGQSTPNFT--LTTGQ------------------------ERGV---------NYVDYYPL-----------  195 (814)
T ss_dssp             -SEEEEEETTCSSCSEE--EECCC------------------------TTCC---------CEEEECCS-----------
T ss_pred             -CeEEEEECCCCcceeE--EecCC------------------------CCCE---------EEEEEEEC-----------
Confidence             2222211111100000  00000                        0000         00111110           


Q ss_pred             ccceEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-e
Q psy5768         276 EYDAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-E  353 (652)
Q Consensus       276 ~~~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~  353 (652)
                      +...+|+.+. ...|+..++..+    .+...+.  .+...+..+.|.+..+.|+... ..+.|...++........+ .
T Consensus       196 ~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~  268 (814)
T 3mkq_A          196 PDKPYMITASDDLTIKIWDYQTK----SCVATLE--GHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVEKTLNV  268 (814)
T ss_dssp             TTCCEEEEECTTSEEEEEETTTT----EEEEEEE--CCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC----cEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEeec
Confidence            0112333332 233444454211    1112222  2234577888988766555444 4577888887653333222 4


Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEE-ecCCCCCceEEEe
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT-NWNSHLPSIQRAF  432 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywt-d~~~~~~~I~r~~  432 (652)
                      ....+..+++.+.++.+|.+-...+.+.+.++..               ....++++|. |.++|+ ........+....
T Consensus       269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~  332 (814)
T 3mkq_A          269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN---------------DEPTLSLDPV-GKLVWSGGKNAAASDIFTAV  332 (814)
T ss_dssp             SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC---------------CSCCEEECSS-SEEEEECCTTSCTTCEEEEE
T ss_pred             CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC---------------CCceeEECCC-CCEEEECcccccceeeeeee
Confidence            4557888998888877666555555565555432               1234666774 444444 2222222344433


Q ss_pred             ecCC-------Cce---EEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCC
Q psy5768         433 FSGF-------GTE---SIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT  479 (652)
Q Consensus       433 ldG~-------~~~---~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~  479 (652)
                      +.+.       ...   ......-..|..+++.+.++.|..+.  .+.+...++...
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--~~~~~i~~~~~~  387 (814)
T 3mkq_A          333 IRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--DGEYVIYTALAW  387 (814)
T ss_dssp             CCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE--TTEEEEEETTTT
T ss_pred             cccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec--CCEEEEEECccc
Confidence            3211       100   01111123578999998888777765  456666666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.33  E-value=0.004  Score=70.21  Aligned_cols=197  Identities=11%  Similarity=0.033  Sum_probs=120.8

Q ss_pred             cCCCe-EEEeecccccEEEEecc--C-CcceEEee-----ccCceeeeEEEccCCEEEEEeCCC---------CeEEEEE
Q psy5768         323 YKRKT-LFYSDIQKGTINSVFFN--G-SNHRVLLE-----RQGSVEGLAYEYVHNYLYWTCNND---------ATINKID  384 (652)
Q Consensus       323 ~~~~~-lywsd~~~~~I~~~~~~--g-~~~~~i~~-----~~~~~~glAvDw~~~~LYwtd~~~---------~~I~~~~  384 (652)
                      +..++ |+++......|+.++++  | .....+..     ....+.++++.+.++.|+++....         .+|.+++
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence            45666 77776656788888887  4 44444433     234677899999999999876431         4788888


Q ss_pred             cCCCC----CccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC-----CCceEEEeecCC----CceEEEEcCCCCCce
Q psy5768         385 LDSPK----AQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-----LPSIQRAFFSGF----GTESIITTDITMPNA  451 (652)
Q Consensus       385 ~~~~~----~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~-----~~~I~r~~ldG~----~~~~l~~~~l~~P~g  451 (652)
                      +++..    +..+.+. ........+++++|...+|+|+.+...     ...|+...++++    ..+.+....-..+..
T Consensus       168 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          168 LDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TTSTTTTCGGGSEESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             CCCCccccCCceeEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            87621    1122221 022345567889999889999876531     237999999853    333444322345677


Q ss_pred             EEEecCCCEEEEEeCCCC--eEEEEecCCCceEEEecCC--CCc------eeEEEEe-CCEEEEEcC-CCCeEEEEEccC
Q psy5768         452 LALDHQAEKLFWGDARLD--KIERCDYDGTNRIVLSKIS--PLH------PFDMAVY-GEFIFWTDW-VIHAVLRANKYT  519 (652)
Q Consensus       452 laiD~~~~~LYw~D~~~~--~I~~~~ldG~~~~~l~~~~--~~~------p~glav~-~~~lYwtd~-~~~~I~~~~k~~  519 (652)
                      ++..++++ ||++....+  .|+.+++++...+.+....  ...      ...+++. ++.++++-. ....|+.++..+
T Consensus       247 ~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             eEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence            88888777 666544334  8999998766655554422  111      2356664 455554432 444677777654


Q ss_pred             Cc
Q psy5768         520 GE  521 (652)
Q Consensus       520 g~  521 (652)
                      +.
T Consensus       326 ~~  327 (662)
T 3azo_A          326 GE  327 (662)
T ss_dssp             TE
T ss_pred             Cc
Confidence            43

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.30  E-value=0.17  Score=50.50  Aligned_cols=231  Identities=12%  Similarity=0.050  Sum_probs=138.5

Q ss_pred             EEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE--e-eccC
Q psy5768         280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL--L-ERQG  356 (652)
Q Consensus       280 ~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i--~-~~~~  356 (652)
                      +|+.+....|+..++..+ ....++..+....+-..+..++|.+..+.|+... ..+.|...+++.......  . ....
T Consensus        65 ~l~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  142 (337)
T 1gxr_A           65 HVYTGGKGCVKVWDISHP-GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAP  142 (337)
T ss_dssp             EEEEECBSEEEEEETTST-TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSSS
T ss_pred             EEEEcCCCeEEEEECCCC-CceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCCcceeeecccCCC
Confidence            455555555665566222 2222223332212335578899998777666654 457788888776442222  2 3344


Q ss_pred             ceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG  435 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG  435 (652)
                      .+..+++.+.++.|+... ..+.|.+.++...    +.+.... ....+.+++++|...+|+.....   +.|...++..
T Consensus       143 ~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~~  214 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCC-SDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLD---NTVRSWDLRE  214 (337)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecC---CcEEEEECCC
Confidence            678899988777776554 5678988887642    3333332 34678899999977677665533   3677666655


Q ss_pred             CCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEE
Q psy5768         436 FGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLR  514 (652)
Q Consensus       436 ~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~  514 (652)
                      ........ .-..+..+++.+.++.|+.+. ..+.|...+++......+.. ....+.++++.. +.++.+-...+.|..
T Consensus       215 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          215 GRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             TEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcC-CccceeEEEECCCCCEEEEecCCCcEEE
Confidence            43332222 223567899988888887765 45678889998876655433 235567777763 333344445667777


Q ss_pred             EEccCCceE
Q psy5768         515 ANKYTGEEV  523 (652)
Q Consensus       515 ~~k~~g~~~  523 (652)
                      .+..+++..
T Consensus       292 ~~~~~~~~~  300 (337)
T 1gxr_A          292 WRTPYGASI  300 (337)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCeEE
Confidence            776666544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.30  E-value=0.18  Score=57.08  Aligned_cols=133  Identities=11%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             CCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCC------cceEEEEEcCCCccEEEEeCC-
Q psy5768           9 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ------VVTIEMAFMDGTKRETVVSQK-   81 (652)
Q Consensus         9 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~------~~~I~~~~~dgs~~~~v~~~~-   81 (652)
                      ..+.|+++++.+.....+.....  . ....+.+++++|..++|.++.....      ...|+.+++++...+.+.... 
T Consensus        35 ~dg~i~~~d~~~g~~~~~~~~~~--~-~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  111 (723)
T 1xfd_A           35 QKGTVRLWNVETNTSTVLIEGKK--I-ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV  111 (723)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTT--T-TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred             CCCCEEEEECCCCcEEEEecccc--c-cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc
Confidence            45678888887655555553211  0 0014789999999998888751011      267888998876544442221 


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCC------------------CCceeEEEcCCCC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGV------------------DQPSALAVDPESG  143 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~------------------~~P~~iavd~~~g  143 (652)
                      ....+.    .+++.+.++.|.++..  +.|.+.++++.....+.....                  ..+++++..|...
T Consensus       112 ~~~~~~----~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~  185 (723)
T 1xfd_A          112 SNAKLQ----YAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT  185 (723)
T ss_dssp             CSCCCS----BCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred             cccccc----ccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence            011244    6777777777877764  688888887655444443321                  1347899999766


Q ss_pred             eEEEEec
Q psy5768         144 YLFWSES  150 (652)
Q Consensus       144 ~lywtd~  150 (652)
                      +|+++..
T Consensus       186 ~la~~~~  192 (723)
T 1xfd_A          186 RLAYAAI  192 (723)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7776643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.27  E-value=0.33  Score=53.19  Aligned_cols=169  Identities=7%  Similarity=-0.115  Sum_probs=100.8

Q ss_pred             CCCCeEEEEecC-C--------CeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCc---ceEEEEEcCCCccE
Q psy5768           8 PTQSKIVVCNLE-G--------EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV---VTIEMAFMDGTKRE   75 (652)
Q Consensus         8 ~~~~~I~~~~~~-g--------~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~---~~I~~~~~dgs~~~   75 (652)
                      ...+.|.+++++ +        +....+..       .-..+.++++++.+.+|+...  ...   ..|+.++ .+....
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~--~~~~~~~~v~~~d-~~~~~~  154 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQV-------LAGPISDISWDFEGRRLCVVG--EGRDNFGVFISWD-SGNSLG  154 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-------CSSCEEEEEECTTSSEEEEEE--CCSSCSEEEEETT-TCCEEE
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhc-------ccccEEEEEEeCCCCEEEEec--cCCCCccEEEEEE-CCCcce
Confidence            346778888884 2        33333332       235789999999988888776  332   4555554 233222


Q ss_pred             EEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCC---CceeEEEcCC-CCeEEEEecC
Q psy5768          76 TVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVD---QPSALAVDPE-SGYLFWSESG  151 (652)
Q Consensus        76 ~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~---~P~~iavd~~-~g~lywtd~~  151 (652)
                       .+... ...+.    .+++...+..++.+-...+.|.+.++........+.....   ....+++.|. ..+|+.... 
T Consensus       155 -~~~~~-~~~v~----~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  227 (615)
T 1pgu_A          155 -EVSGH-SQRIN----ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-  227 (615)
T ss_dssp             -ECCSC-SSCEE----EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-
T ss_pred             -eeecC-CccEE----EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-
Confidence             22333 44566    8888776654666666788999998776544444443334   5789999997 444544432 


Q ss_pred             CCCeEEEEeCCCCCcEEEE-e---ecccCceeEEEeccCCEEEEEeCC
Q psy5768         152 KIPLIARAGLDGKKQTILA-Q---EIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       152 ~~~~I~~~~ldg~~~~~~~-~---~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                       ...|...++........+ .   ..-.....+++. .+..|+....+
T Consensus       228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          228 -DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             -TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             -CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence             456777776544333333 2   223456778887 56666655554

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.22  E-value=0.00018  Score=52.38  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=28.3

Q ss_pred             CCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         555 NGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       555 ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++.|.|.|+.+++ +|+|.|+.||.+..| ++|.+
T Consensus        19 ~~~C~~~C~n~~G-sy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A           19 QPQCQHLCHNYVG-GYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCTTSSEEEEETT-EEEEECSTTCEECTTSSCEEC
T ss_pred             CCCCCCEeECCCC-CeEEECCCCCeECCCCCccCC
Confidence            3679999998876 699999999999888 88864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.26  Score=50.93  Aligned_cols=75  Identities=9%  Similarity=0.004  Sum_probs=51.0

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+..+++++..+.|+...   ..+.|..++.+|.....+ ... ...+.    ++++...++.|+.+. ..+.|.+.++
T Consensus       109 ~~v~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~-~~~-~~~v~----~~~~~~~~~~l~~~~-~d~~i~iwd~  178 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSIVTGV---ENGELRLWNKTGALLNVL-NFH-RAPIV----SVKWNKDGTHIISMD-VENVTILWNV  178 (425)
T ss_dssp             BCEEEEEECTTSSEEEEEE---TTSCEEEEETTSCEEEEE-CCC-CSCEE----EEEECTTSSEEEEEE-TTCCEEEEET
T ss_pred             CceEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCeeeec-cCC-CccEE----EEEECCCCCEEEEEe-cCCeEEEEEC
Confidence            3789999999888888766   557888888777655444 333 44566    788876555555544 4677888887


Q ss_pred             CCCcE
Q psy5768         118 TGQYR  122 (652)
Q Consensus       118 dg~~~  122 (652)
                      .....
T Consensus       179 ~~~~~  183 (425)
T 1r5m_A          179 ISGTV  183 (425)
T ss_dssp             TTTEE
T ss_pred             CCCcE
Confidence            64433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.20  E-value=0.14  Score=58.19  Aligned_cols=210  Identities=10%  Similarity=0.054  Sum_probs=128.0

Q ss_pred             eEEEEEEEcCCCeEEEeecccc----cEEEEeccCCcceEE-eeccCceeeeEEEccCCEEEEEeCCC------------
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKG----TINSVFFNGSNHRVL-LERQGSVEGLAYEYVHNYLYWTCNND------------  377 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~----~I~~~~~~g~~~~~i-~~~~~~~~glAvDw~~~~LYwtd~~~------------  377 (652)
                      ...++.+.+..++|.++....+    .|+..++.+...... .... ...+++..+.++.||++....            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            3567888888888877654332    688888876544332 2222 256788877889999886532            


Q ss_pred             ---CeEEEEEcCCCCCccEEEEEeCC-CCCceEEEEeCCCCEEEEEecCCC--CCceEEEeecC------C--CceEEEE
Q psy5768         378 ---ATINKIDLDSPKAQRIVVVRLGQ-HDKPRGIDIDSCDSRIYWTNWNSH--LPSIQRAFFSG------F--GTESIIT  443 (652)
Q Consensus       378 ---~~I~~~~~~~~~~~~~~~~~~~~-~~~P~~Iavdp~~g~Lywtd~~~~--~~~I~r~~ldG------~--~~~~l~~  443 (652)
                         ..|.+.++.+.......+..... .....++++.|..++|+++.....  ...|+...+++      .  ..+.|..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence               24888887543211122222111 123468999999999988765221  34888888875      2  2334432


Q ss_pred             cCCCCCceEEEecCCCEEEEEeCC---CCeEEEEecCCCc---eEEEecCCC-CceeEEEEe-CCEEEEEcCCCC--eEE
Q psy5768         444 TDITMPNALALDHQAEKLFWGDAR---LDKIERCDYDGTN---RIVLSKISP-LHPFDMAVY-GEFIFWTDWVIH--AVL  513 (652)
Q Consensus       444 ~~l~~P~glaiD~~~~~LYw~D~~---~~~I~~~~ldG~~---~~~l~~~~~-~~p~glav~-~~~lYwtd~~~~--~I~  513 (652)
                       .. ....-.+++.+++||+....   ..+|..+++++..   .+.+..... ....++++. +++|+++-...+  .|+
T Consensus       285 -~~-~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          285 -NF-EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             -SS-SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             -CC-CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence             22 12223467778999988542   4579999998764   255544321 245567777 788888765443  577


Q ss_pred             EEEccCCceEEEEe
Q psy5768         514 RANKYTGEEVYTLR  527 (652)
Q Consensus       514 ~~~k~~g~~~~~~~  527 (652)
                      ..+..+|+..+.+.
T Consensus       363 ~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          363 LHDLATGALLKIFP  376 (710)
T ss_dssp             EEETTTCCEEEEEC
T ss_pred             EEECCCCCEEEecC
Confidence            77765666544443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.29  Score=50.51  Aligned_cols=334  Identities=11%  Similarity=0.048  Sum_probs=172.0

Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc----CCCc-------EEEEEeC---------CCCCceeEEEcCCCC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL----TGQY-------RYVLISG---------GVDQPSALAVDPESG  143 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~----dg~~-------~~~l~~~---------~~~~P~~iavd~~~g  143 (652)
                      ..+.    .+++....+++.++-...+.|.+.++    ....       ...+...         .......+++.|...
T Consensus        46 ~~v~----~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           46 DNIV----SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             SCCS----EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             CceE----EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            4566    88888766525555455788888887    5433       2222221         112678999999666


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCc
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYL  223 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  223 (652)
                      +|+....  ...|...+.+|.....+.. .-.....+++.+.+..|+....+| ..+..-....   ..           
T Consensus       122 ~l~~~~~--dg~i~i~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~---~~-----------  183 (425)
T 1r5m_A          122 SIVTGVE--NGELRLWNKTGALLNVLNF-HRAPIVSVKWNKDGTHIISMDVEN-VTILWNVISG---TV-----------  183 (425)
T ss_dssp             EEEEEET--TSCEEEEETTSCEEEEECC-CCSCEEEEEECTTSSEEEEEETTC-CEEEEETTTT---EE-----------
T ss_pred             EEEEEeC--CCeEEEEeCCCCeeeeccC-CCccEEEEEECCCCCEEEEEecCC-eEEEEECCCC---cE-----------
Confidence            6665543  3456666666654444332 234678899988888888777763 3332211111   10           


Q ss_pred             ceeeeeeeccCC--CCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCC
Q psy5768         224 KDIKIYSKDAQT--GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN  301 (652)
Q Consensus       224 ~~i~v~~~~~q~--~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~  301 (652)
                        +..+......  ..+.......+....|       .+..+             ...++..+....|+..++...    
T Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------------~~~~~~~~~~g~i~~~d~~~~----  237 (425)
T 1r5m_A          184 --MQHFELKETGGSSINAENHSGDGSLGVD-------VEWVD-------------DDKFVIPGPKGAIFVYQITEK----  237 (425)
T ss_dssp             --EEEECCC---------------CCCBSC-------CEEEE-------------TTEEEEECGGGCEEEEETTCS----
T ss_pred             --EEEeeccccCccceeeccccCCcceeeE-------EEEcC-------------CCEEEEEcCCCeEEEEEcCCC----
Confidence              0011000000  0000000000000000       00001             112333344556666666222    


Q ss_pred             CCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeE
Q psy5768         302 SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATI  380 (652)
Q Consensus       302 ~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I  380 (652)
                      .++..+.  .+...+..++|.+..+.|+... ..+.|...++........+ .....+..+++.+.+  ++++-...+.|
T Consensus       238 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i  312 (425)
T 1r5m_A          238 TPTGKLI--GHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSV  312 (425)
T ss_dssp             SCSEEEC--CCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEE
T ss_pred             ceeeeec--cCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcE
Confidence            1222232  2234577899998777555554 4577888877654333333 344567888888766  55666677899


Q ss_pred             EEEEcCCCCCccEEEEEe-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC--------------------ce
Q psy5768         381 NKIDLDSPKAQRIVVVRL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG--------------------TE  439 (652)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~--------------------~~  439 (652)
                      .+.++...    +.+... .....+.+++++|...+|+.....   +.|...++....                    ..
T Consensus       313 ~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (425)
T 1r5m_A          313 RLWSLKQN----TLLALSIVDGVPIFAGRISQDGQKYAVAFMD---GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY  385 (425)
T ss_dssp             EEEETTTT----EEEEEEECTTCCEEEEEECTTSSEEEEEETT---SCEEEEECHHHHC--------------CEECCEE
T ss_pred             EEEECCCC----cEeEecccCCccEEEEEEcCCCCEEEEEECC---CeEEEEECCCCccceeeeecccccccCcccchhh
Confidence            99987542    222222 334678899999977777666543   255555554322                    11


Q ss_pred             EEEEcCCC--CCceEEEecCCCEEEEEeCCCCeEEEEecCC
Q psy5768         440 SIITTDIT--MPNALALDHQAEKLFWGDARLDKIERCDYDG  478 (652)
Q Consensus       440 ~l~~~~l~--~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG  478 (652)
                      ..+.....  .+..+++.+.++.|+.+. ..+.|...+++|
T Consensus       386 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~g  425 (425)
T 1r5m_A          386 ASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIPG  425 (425)
T ss_dssp             EEECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECCC
T ss_pred             hhhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeecC
Confidence            11111111  556778877777666554 334566666654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.16  E-value=0.12  Score=53.93  Aligned_cols=176  Identities=10%  Similarity=-0.068  Sum_probs=116.6

Q ss_pred             EEecCCCCeEEEEecC-CC-eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           4 AVSSPTQSKIVVCNLE-GE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      +++....+.|.++++. +. ....+..       .-..+.++++++.+..|+...   ..+.|..+++........+...
T Consensus       189 l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~  258 (401)
T 4aez_A          189 LSSGSRSGAIHHHDVRIANHQIGTLQG-------HSSEVCGLAWRSDGLQLASGG---NDNVVQIWDARSSIPKFTKTNH  258 (401)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEEC-------CSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTCSSEEEEECCC
T ss_pred             EEEEcCCCCEEEEecccCcceeeEEcC-------CCCCeeEEEEcCCCCEEEEEe---CCCeEEEccCCCCCccEEecCC
Confidence            4444567888899887 33 3334433       235789999999777777665   5678988988754433333444


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeC--CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA  159 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~--~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~  159 (652)
                       ...+.    .+++...+.+++.+-+  ..+.|.+.++........+.. -.....++..|...+|+.+.....+.|...
T Consensus       259 -~~~v~----~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~  332 (401)
T 4aez_A          259 -NAAVK----AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIW  332 (401)
T ss_dssp             -SSCCC----EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred             -cceEE----EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence             45567    8888877778888754  578999999875544444443 357889999997777766543345677777


Q ss_pred             eCCCCCcEEEE--eecccCceeEEEeccCCEEEEEeCC
Q psy5768         160 GLDGKKQTILA--QEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       160 ~ldg~~~~~~~--~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ++.........  ...-.....+++++.+..|+....|
T Consensus       333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d  370 (401)
T 4aez_A          333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD  370 (401)
T ss_dssp             EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT
T ss_pred             ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            76654333222  2223467788888877777766666

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.09  E-value=0.00013  Score=73.69  Aligned_cols=43  Identities=35%  Similarity=0.772  Sum_probs=36.9

Q ss_pred             CCCCCCC-CCCCcccceecCCCceEEEeCCc-cccCCCcccccce
Q psy5768         237 TNPCGVN-NGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDA  279 (652)
Q Consensus       237 ~n~C~~~-ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~  279 (652)
                      .|||..+ ||+|+|.|.....+|+|.|+.|| |..|+++|.+.++
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~   46 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ   46 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECST
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccc
Confidence            5899988 99999999988889999999998 6679999986443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.06  E-value=0.028  Score=62.22  Aligned_cols=195  Identities=10%  Similarity=0.007  Sum_probs=120.1

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeecc-CceeeeEEEccCCEEEEEeC--CC--CeEEEEEc--CCC
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCN--ND--ATINKIDL--DSP  388 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~-~~~~glAvDw~~~~LYwtd~--~~--~~I~~~~~--~~~  388 (652)
                      +.++++.+..++|.++....+++....++|.....+...- ..+.++++.+. +.||+++.  ..  ..|+.+++  ++.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            5678888888888887654455444445665544444222 34556666544 67888875  22  36777777  543


Q ss_pred             CCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC-
Q psy5768         389 KAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR-  467 (652)
Q Consensus       389 ~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~-  467 (652)
                      .   .   .+.........++.|....++++.....  .+...++++...+.+.....   ..+++++++++|+++... 
T Consensus       103 ~---~---~l~~~~~~~~~~~s~dg~~~~~~s~~~~--~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A          103 E---Q---RLEAVKPMRILSGVDTGEAVVFTGATED--RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             C---E---ECTTSCSBEEEEEEECSSCEEEEEECSS--CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred             c---c---cccCCCCceeeeeCCCCCeEEEEecCCC--CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence            2   2   2234445566777776655555543333  33345777766555554332   788999999999976432 


Q ss_pred             --CCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCC-CeEEEEEccCCceE
Q psy5768         468 --LDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVI-HAVLRANKYTGEEV  523 (652)
Q Consensus       468 --~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~-~~I~~~~k~~g~~~  523 (652)
                        ...|+.+++++...+.+.... ....++++.  +.+|+.++... ..|+..+..+|+..
T Consensus       172 ~~~~~i~~~d~~~g~~~~l~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLRVFDSGE-GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             TTEEEEEEEETTTCCCEEECCSS-CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             CCCeEEEEEcCCCCCceEeecCC-CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence              256999999887777665432 445667765  55788555432 27888888777655

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.00  E-value=0.59  Score=51.13  Aligned_cols=173  Identities=9%  Similarity=-0.041  Sum_probs=101.2

Q ss_pred             EEEecCCCCeEEEEecCC-----CeeEEEecCCCCCCCCCCC-eeEEEEEC--CCCEEEEEeccCCcceEEEEEcC-C--
Q psy5768           3 IAVSSPTQSKIVVCNLEG-----EYQTTILSNESNDTSTLSK-ISSIAVWP--VKGKMFWSNVTKQVVTIEMAFMD-G--   71 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g-----~~~~~~~~~~~~~~~~~~~-~~~v~~d~--~~~~lyw~d~~~~~~~I~~~~~d-g--   71 (652)
                      |++++  ++.|.+++++.     +....+...       -.. +.+++++|  ....|+...   ..+.|..+++. |  
T Consensus        33 l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h-------~~~~v~~~~~sp~~~~~~l~s~~---~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           33 IAYPC--GKSAFVRCLDDGDSKVPPVVQFTGH-------GSSVVTTVKFSPIKGSQYLCSGD---ESGKVIVWGWTFDKE  100 (615)
T ss_dssp             EEEEE--TTEEEEEECCSSCCSSCSEEEECTT-------TTSCEEEEEECSSTTCCEEEEEE---TTSEEEEEEEEEEGG
T ss_pred             EEEec--CCeEEEEECCCCCCccccceEEecC-------CCceEEEEEECcCCCCCEEEEec---CCCEEEEEeCCCCcc
Confidence            45554  67888998874     345555432       245 89999999  777777665   46778887774 2  


Q ss_pred             ----C-ccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCC---CEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCC
Q psy5768          72 ----T-KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE---NVIEVARLTGQYRYVLISGGVDQPSALAVDPESG  143 (652)
Q Consensus        72 ----s-~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~---~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g  143 (652)
                          . .....+... ...+.    .+++...++.|+.+....   +.|.+.+ .++.. ..+.........+++.|...
T Consensus       101 ~~~~~~~~~~~~~~~-~~~v~----~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~-~~~~~~~~~v~~~~~~~~~~  173 (615)
T 1pgu_A          101 SNSVEVNVKSEFQVL-AGPIS----DISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSL-GEVSGHSQRINACHLKQSRP  173 (615)
T ss_dssp             GTEEEEEEEEEEECC-SSCEE----EEEECTTSSEEEEEECCSSCSEEEEETT-TCCEE-EECCSCSSCEEEEEECSSSS
T ss_pred             cccccccccchhhcc-cccEE----EEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcc-eeeecCCccEEEEEECCCCC
Confidence                1 111122323 34566    888887776676665432   3555554 23322 22333345678899998665


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEEEeeccc---CceeEEEecc-CCEEEEEeCC
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTILAQEIIM---PIKDITLDLK-FFSAFYRNLS  195 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~---~p~gl~lD~~-~~~ly~~d~~  195 (652)
                      +++.+-. ....|...++........+...-.   ....+++.+. +..|+....+
T Consensus       174 ~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          174 MRSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             CEEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             cEEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            4555433 245666666553332222222223   5678888887 6666666665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.98  E-value=0.44  Score=49.41  Aligned_cols=203  Identities=9%  Similarity=-0.036  Sum_probs=126.4

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCc--------ceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEE
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--------HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID  384 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~--------~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~  384 (652)
                      ...+.+++|.+.++.++.+-...+.|...++....        ...+......+..|++.+.+++++++-...+.|.+.+
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            35678999998555555555556788888876431        2233334457889999988766777777778899888


Q ss_pred             cCCCCCccEEEEEe---CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE-EcC-CCCCceEEEecCCC
Q psy5768         385 LDSPKAQRIVVVRL---GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII-TTD-ITMPNALALDHQAE  459 (652)
Q Consensus       385 ~~~~~~~~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~-~~~-l~~P~glaiD~~~~  459 (652)
                      +...    +.+..+   .......+|+++|...+|+.+...   ..|...++........+ ... -..+..+++.+.+.
T Consensus       161 ~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          161 VGTG----AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD---KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             TTTT----EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT---SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CCCC----CccEEEecCCCCCceEEEEECCCCCEEEEEecC---CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            8642    333333   234667899999976666665543   36666666543322222 111 12367888887655


Q ss_pred             EEEEEe--CCCCeEEEEecCCCce--EEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCce
Q psy5768         460 KLFWGD--ARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       460 ~LYw~D--~~~~~I~~~~ldG~~~--~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      .|+.+-  ...+.|...++.....  ..........+..+++.  +.+||.+....+.|...+..+++.
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            444432  4567888888876432  22221222456777776  458888877777787777766653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.97  E-value=0.23  Score=51.10  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccE
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI  393 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~  393 (652)
                      .+.+++|.+..+.++.+-...+.|...++........+ .....+..|++.+.++++..+-+..++|.+-++..    .+
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~----~~  303 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF----SE  303 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS----CE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC----Cc
Confidence            35678888877777776656677887776544333333 34456788999887777666666678888888754    23


Q ss_pred             EEEEeCCCCCceEEEEeCCCCEEEEEec
Q psy5768         394 VVVRLGQHDKPRGIDIDSCDSRIYWTNW  421 (652)
Q Consensus       394 ~~~~~~~~~~P~~Iavdp~~g~Lywtd~  421 (652)
                      .+..........+|+.+|..+.++.|-.
T Consensus       304 ~~~~~~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          304 VFRDLSHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             EEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EeEECCCCCCEEEEEEeCCCCCEEEEEc
Confidence            3333344567789999997676666543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=96.97  E-value=0.011  Score=65.38  Aligned_cols=186  Identities=10%  Similarity=-0.012  Sum_probs=113.8

Q ss_pred             EEEEEEEcCCCeEEEeec----ccccEEEEec--cCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy5768         316 IIELSYDYKRKTLFYSDI----QKGTINSVFF--NGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~----~~~~I~~~~~--~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      +.++++.+. +.+|+++.    ....|+.+++  +|... . +........+++.+.++.++++....+.+...++.+..
T Consensus        67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~-l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-R-LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-E-CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-c-ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            455666655 67787775    2236788888  66543 2 22222344567777787777776655655566765432


Q ss_pred             CccEEEEEeCCCCCceEEEEeCCCCEEEEEecCC-CCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         390 AQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS-HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       390 ~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~-~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                        .+.+.....    .+++++|...+|+++.... ....|++.++++...+.|.. .......+++.+++++|+..+...
T Consensus       144 --~~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~  216 (582)
T 3o4h_A          144 --LRELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS-GEGSFSSASISPGMKVTAGLETAR  216 (582)
T ss_dssp             --EEEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC-SSCEEEEEEECTTSCEEEEEECSS
T ss_pred             --EEEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec-CCCccccceECCCCCEEEEccCCC
Confidence              233332221    7899999888888765432 12479999988777665543 334457899999999999555432


Q ss_pred             -CeEEEEecCCCceEEEecCCCCceeEEE--------Ee-CCEEEEEcCCCCeE
Q psy5768         469 -DKIERCDYDGTNRIVLSKISPLHPFDMA--------VY-GEFIFWTDWVIHAV  512 (652)
Q Consensus       469 -~~I~~~~ldG~~~~~l~~~~~~~p~gla--------v~-~~~lYwtd~~~~~I  512 (652)
                       ..|..+++++...+ ++......+.+++        +. ++.+|++-...+.+
T Consensus       217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~  269 (582)
T 3o4h_A          217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS  269 (582)
T ss_dssp             CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred             eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence             38999999988777 4443222233333        43 23666655444443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.059  Score=56.02  Aligned_cols=211  Identities=9%  Similarity=0.027  Sum_probs=122.7

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccC----CcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g----~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      ..+.+++|.+..+.|+.... .+.|...++..    ......+ .....+..|++.+.+++++.+-...+.|.+.++...
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALD-NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEES-SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CceEEEEECCCCCeEEEEcc-CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            45788999887766665543 57787777765    1111222 344567889998875556666677788888887653


Q ss_pred             CCcc---EEEEE---eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC------CCCCceEEEec
Q psy5768         389 KAQR---IVVVR---LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD------ITMPNALALDH  456 (652)
Q Consensus       389 ~~~~---~~~~~---~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~------l~~P~glaiD~  456 (652)
                      ....   .....   ........+|+++|..+.++.+-...  +.|...++........+...      -..+..+++.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS--SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC--CCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            2000   11110   12335678999999756666664332  36666666554332222221      23467899998


Q ss_pred             CCCEEEEEeCCCC---eEEEEecCCC-ceEEEec-CCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         457 QAEKLFWGDARLD---KIERCDYDGT-NRIVLSK-ISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       457 ~~~~LYw~D~~~~---~I~~~~ldG~-~~~~l~~-~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .+..++.+-...+   .|...++... .....+. .....+.++++.  ++.++.+-...+.|...+..+++....+.
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence            8755555444444   7888888753 2222222 223456777774  34444554556677777766666555554

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=96.93  E-value=0.00045  Score=69.66  Aligned_cols=40  Identities=28%  Similarity=0.591  Sum_probs=35.2

Q ss_pred             CCCCCCC-CCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         548 KTPCRHL-NGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       548 ~~~C~~~-ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      .|+|..+ ||+|+|.|...++ +++|.|+.||.|..| ++|.+
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~d~~sC~p   43 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQE-SYTCSCAQGYRLGEDHKQCVP   43 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTT-SCCCBCCTTEEECTTSSCEEE
T ss_pred             CCccCCCCCCCCCCEeeCCCC-CeEecCCCCcccCCCCCcccc
Confidence            4789888 8999999998765 699999999999999 89986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.90  E-value=0.48  Score=48.47  Aligned_cols=195  Identities=9%  Similarity=-0.051  Sum_probs=113.6

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      -..+.+++|.+..+.|.-. ...+.|...++........+ .....+..+++.+.+..++.+-+..++|.+-++..... 
T Consensus       127 ~~~V~~v~~spdg~~l~sg-s~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-  204 (344)
T 4gqb_B          127 DDIVSTVSVLSSGTQAVSG-SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-  204 (344)
T ss_dssp             SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-
T ss_pred             CCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-
Confidence            3457889998876655544 44577888887654332223 33457888999888888888888788898888754321 


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ...+........+.+++.+|..+.++.+-...  +.|...++........+...-...+.|++.+.+.++..+-...+.|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d--g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i  282 (344)
T 4gqb_B          205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN--GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL  282 (344)
T ss_dssp             EEECC----CCCEEEEEECSSCTTEEEEEETT--SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             eeeeecceeeccceeeeecCCCCcceEEeccC--CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence            12221112334678999999888777764332  2555555543332222222233557888887776655444445667


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeE
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAV  512 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I  512 (652)
                      ...|+.......+ ........+|++.  +.+|+.+-...+.|
T Consensus       283 ~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          283 AVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             EEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            7777765543332 2222345677764  34555554444444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.90  E-value=0.38  Score=48.54  Aligned_cols=173  Identities=9%  Similarity=-0.049  Sum_probs=106.9

Q ss_pred             EecCCCCeEEEEecCCCee-EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc
Q psy5768           5 VSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY   83 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~   83 (652)
                      ++....+.|.+++++.... ..+..       .-..+.+++++|..+.|....   ..+.|..+++........+... .
T Consensus       138 ~~g~~dg~v~i~~~~~~~~~~~~~~-------~~~~v~~~~~spdg~~lasg~---~dg~i~iwd~~~~~~~~~~~~h-~  206 (321)
T 3ow8_A          138 ATGTHVGKVNIFGVESGKKEYSLDT-------RGKFILSIAYSPDGKYLASGA---IDGIINIFDIATGKLLHTLEGH-A  206 (321)
T ss_dssp             EEECTTSEEEEEETTTCSEEEEEEC-------SSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCC-S
T ss_pred             EEEcCCCcEEEEEcCCCceeEEecC-------CCceEEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEccc-C
Confidence            3344567777887764433 33332       224688999999888887665   5678888887654333333333 3


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG  163 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg  163 (652)
                      ..+.    .+++.+.+ ++..+-+..+.|.+.++........+.+-......+++.|...+|+-+.  ....|..-++..
T Consensus       207 ~~v~----~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~D~~v~iwd~~~  279 (321)
T 3ow8_A          207 MPIR----SLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS--SDKSVKVWDVGT  279 (321)
T ss_dssp             SCCC----EEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT
T ss_pred             Ccee----EEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCC
Confidence            4567    88888744 4555555678899999876554444444445678899999655555443  244666666653


Q ss_pred             CCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         164 KKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       164 ~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ......+..--....++++.+.+.+|.-...|
T Consensus       280 ~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence            33222222223456788888877777666666

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=96.88  E-value=0.00053  Score=80.35  Aligned_cols=37  Identities=35%  Similarity=0.832  Sum_probs=32.8

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAM  631 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~~  631 (652)
                      .|. .+|+|.+|+||+..|.|||++||.|+|||..  |..
T Consensus       118 ~C~-~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~--C~~  154 (913)
T 3t5o_A          118 DCK-NKFRCDSGRCIARKLECNGENDCGDNSDERD--CGR  154 (913)
T ss_dssp             CCS-SEEECTTSCEEEGGGSSSSSCCSSSSGGGTT--CSS
T ss_pred             Ccc-cccccCCCceEccceecCCcccCCCcccccc--CCC
Confidence            353 6799999999999999999999999999986  754

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.88  E-value=0.00028  Score=59.83  Aligned_cols=45  Identities=33%  Similarity=0.697  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccce
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDA  279 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~  279 (652)
                      .++|||..+|++|++.|+..+.+|+|.|+.||...+++.|.+.++
T Consensus        27 Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~dide   71 (107)
T 2w2n_E           27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDE   71 (107)
T ss_dssp             BSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEEC---
T ss_pred             CcCccCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccccccc
Confidence            578999988899999999888899999999997667888875433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.86  E-value=0.16  Score=53.67  Aligned_cols=203  Identities=9%  Similarity=0.028  Sum_probs=125.7

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccC-----------CcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEE
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNG-----------SNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINK  382 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g-----------~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~  382 (652)
                      ..+..++|.+.++.++.+-...+.|+..++..           .....+......+.+|++++.+..++.+-...+.|.+
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  208 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL  208 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence            34556777776566776666667787777653           1112222334467888888877756667777889999


Q ss_pred             EEcCCCCCc-cE---EEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCC---CceEEEEcCCCCCceEEEe
Q psy5768         383 IDLDSPKAQ-RI---VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF---GTESIITTDITMPNALALD  455 (652)
Q Consensus       383 ~~~~~~~~~-~~---~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~---~~~~l~~~~l~~P~glaiD  455 (652)
                      .++...... ..   ............+|+.+|..+.++.+.....  .|...++...   .....+...-..++.|++.
T Consensus       209 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  286 (430)
T 2xyi_A          209 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ--KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN  286 (430)
T ss_dssp             EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS--EEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred             EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC--eEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence            888652211 11   1111134456889999997788888765543  6666666533   1222222233457899999


Q ss_pred             cCCCEEEEEeCCCCeEEEEecCC-Cc-eEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccC
Q psy5768         456 HQAEKLFWGDARLDKIERCDYDG-TN-RIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       456 ~~~~~LYw~D~~~~~I~~~~ldG-~~-~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      +.++.++.+-...+.|...++.. .. ...+ ........+|++.  +.+++.+-...+.|...+...
T Consensus       287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          287 PYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            88887887766778899999875 22 2333 2223456777775  346777766666666555543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.84  E-value=0.023  Score=58.80  Aligned_cols=181  Identities=8%  Similarity=-0.024  Sum_probs=100.3

Q ss_pred             ccEEEEeccCCcceEEeeccCceeeeEEEc-cCCEEEEEeCCC-----CeEEEEEcCCCCCccEEEEEeCCCCCceEEEE
Q psy5768         336 GTINSVFFNGSNHRVLLERQGSVEGLAYEY-VHNYLYWTCNND-----ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDI  409 (652)
Q Consensus       336 ~~I~~~~~~g~~~~~i~~~~~~~~glAvDw-~~~~LYwtd~~~-----~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iav  409 (652)
                      ..|+.+++.+...+.+......+..+++.+ .++.|+++....     .+|+++++++..  .+.+........+..+++
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEE
T ss_pred             ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEE
Confidence            345555544433333333444567778877 566677664332     478888886532  222221001224667899


Q ss_pred             eCCCCEEEEEecCCCCCc--eEEEeecCCCceEEEEcCCCCCceEEEec-CCCEEEEEe---------------CCCCeE
Q psy5768         410 DSCDSRIYWTNWNSHLPS--IQRAFFSGFGTESIITTDITMPNALALDH-QAEKLFWGD---------------ARLDKI  471 (652)
Q Consensus       410 dp~~g~Lywtd~~~~~~~--I~r~~ldG~~~~~l~~~~l~~P~glaiD~-~~~~LYw~D---------------~~~~~I  471 (652)
                      .|...+|+++........  |+..++++...+.+....  .. .+++.+ +++.|+.+.               .....|
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i  322 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PC-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL  322 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SE-EEEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CC-CCCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence            998887777643322235  888888766555544322  11 266776 666555432               134679


Q ss_pred             EEEecCCCceEEEecCCCC----------ceeEEEE--eCCEEEEEcCC--CCeEEEEEccCCc
Q psy5768         472 ERCDYDGTNRIVLSKISPL----------HPFDMAV--YGEFIFWTDWV--IHAVLRANKYTGE  521 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~----------~p~glav--~~~~lYwtd~~--~~~I~~~~k~~g~  521 (652)
                      +.+++++...+.+......          .+..+++  ++.+|+++...  ...|++++..++.
T Consensus       323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          323 YVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             EEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             EEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            9999987665555442210          1223344  35578776543  3357777765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.81  E-value=0.38  Score=49.35  Aligned_cols=203  Identities=8%  Similarity=-0.002  Sum_probs=125.2

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee---ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE---RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~---~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      ..+.+++|.+....++.+-...+.|...++.+......+.   ....+.+|++.+..+++..+-...+.|.+.++.+.  
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--  151 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--  151 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC--
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC--
Confidence            4567888988774555555556888888887655444442   34567888888745555566667788998898752  


Q ss_pred             ccEEEEEeCC--CCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         391 QRIVVVRLGQ--HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       391 ~~~~~~~~~~--~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                       ....+....  .....+++++|...+|+.....   +.|...++++.....+.. .-.....+++.+.++.++.+-...
T Consensus       152 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          152 -VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLLGLDGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             -EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---SEEEEEETTSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEETT
T ss_pred             -ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---CCEEEEECCCCEEEEecc-CCCcEEEEEECCCCCCEEEEEeCC
Confidence             222222111  2457899999987777666543   367777776554433332 234567899998877455554556


Q ss_pred             CeEEEEecCC----CceEEEecCCCCceeEEEEeC---CEEEEEcCCCCeEEEEEccCCceEEE
Q psy5768         469 DKIERCDYDG----TNRIVLSKISPLHPFDMAVYG---EFIFWTDWVIHAVLRANKYTGEEVYT  525 (652)
Q Consensus       469 ~~I~~~~ldG----~~~~~l~~~~~~~p~glav~~---~~lYwtd~~~~~I~~~~k~~g~~~~~  525 (652)
                      +.|...++..    ........ ......++++..   .+|+.. ...+.|...+..+++....
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTBTTSCSE
T ss_pred             CEEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCCCccccc
Confidence            7788888864    22222222 234567787754   344444 4556777777666654333

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.81  E-value=0.3  Score=49.30  Aligned_cols=175  Identities=13%  Similarity=0.048  Sum_probs=107.4

Q ss_pred             EEEecCCCCeEEEEecCCC-eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      ++++....+.|+++|++.. ....+..       .-..+..++++|..++|....   ..+.|..+++........+...
T Consensus        94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~g~---~dg~v~i~~~~~~~~~~~~~~~  163 (321)
T 3ow8_A           94 IAASSSLDAHIRLWDLENGKQIKSIDA-------GPVDAWTLAFSPDSQYLATGT---HVGKVNIFGVESGKKEYSLDTR  163 (321)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEC-------CTTCCCCEEECTTSSEEEEEC---TTSEEEEEETTTCSEEEEEECS
T ss_pred             EEEEEeCCCcEEEEECCCCCEEEEEeC-------CCccEEEEEECCCCCEEEEEc---CCCcEEEEEcCCCceeEEecCC
Confidence            3455556788899998744 4444433       123567899999887777554   6678888888755443333433


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                       -..+.    .+++.+.++.| .+-...+.|.+.++........+..-....+.+++.|...+|+-..  ....|..-++
T Consensus       164 -~~~v~----~~~~spdg~~l-asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s--~dg~i~iwd~  235 (321)
T 3ow8_A          164 -GKFIL----SIAYSPDGKYL-ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS--DDGYIKIYDV  235 (321)
T ss_dssp             -SSCEE----EEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC--TTSCEEEEET
T ss_pred             -CceEE----EEEECCCCCEE-EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc--CCCeEEEEEC
Confidence             34566    88887754444 4444577888888865544333443334568999999655554443  3456777776


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ........+...-.....+++.+.+..|+-...|
T Consensus       236 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D  269 (321)
T 3ow8_A          236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD  269 (321)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            6544333332223456778888776666655555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.79  E-value=0.32  Score=55.04  Aligned_cols=168  Identities=10%  Similarity=0.100  Sum_probs=95.9

Q ss_pred             eEEEEEEEcCCCeEEEeecc---cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeC---CCCeEEEEEcCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQ---KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCN---NDATINKIDLDSP  388 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~---~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~---~~~~I~~~~~~~~  388 (652)
                      ...++.+.+..+.|+++...   ...|+.++..+...+.+..........+. ..++ ||+...   ...+|.++++++.
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            45678888888888776533   34677776544444555543333344332 4566 777644   3578999988653


Q ss_pred             CCc-cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC
Q psy5768         389 KAQ-RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR  467 (652)
Q Consensus       389 ~~~-~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~  467 (652)
                      ... .+.++.........++++.  .+.|+++.......+|+...++|...+.+.........+++.++.+++|++.-..
T Consensus       306 ~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          306 ARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             SGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             CccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            210 1444421112334667776  5777777543333578888887763333221112223455666667777765322


Q ss_pred             ---CCeEEEEecCCCceEEEec
Q psy5768         468 ---LDKIERCDYDGTNRIVLSK  486 (652)
Q Consensus       468 ---~~~I~~~~ldG~~~~~l~~  486 (652)
                         -..|+..++++...+.+..
T Consensus       384 ~~~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          384 FTTPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             TTEEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEEEEEECCCCcEEEEec
Confidence               2478889998776666544

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.79  E-value=0.00054  Score=58.81  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccCcccccCCCceeecc-CeecCCc
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCTINTVCSEHDFKCSD-GMCIPFN  609 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~~~~~C~~~~f~C~~-g~Ci~~~  609 (652)
                      ++|..++++|.+.|+..++ +|+|.|+.||.+..+ ++|.+.      .+|.|.+ +.||+..
T Consensus        55 ~~C~~~~~~C~~~C~n~~g-~y~C~C~~G~~~~~~g~~C~~~------~~~pC~~~~~~i~~~  110 (114)
T 1aut_L           55 LNCSLDNGGCTHYCLEEVG-WRRCSCAPGYKLGDDLLQCHPA------VKFPCGRPWKRMEKK  110 (114)
T ss_dssp             SSSSSGGGGCSSEEEECSS-SEEEECCTTEEECTTSSCEEEC------SSSCTTCCC------
T ss_pred             CcCcCCCCCCCCEeECCCC-CEEeECCCCeeECCCCCccCcC------cccCCCCCCccCCCC
Confidence            5788778899999998776 699999999999888 888752      2567765 3677653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.74  Score=48.65  Aligned_cols=69  Identities=4%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             cEEEEccCCcEEEEeCCCCEEEEEEcC---CCcEEEEEe-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          92 HIAVDWIAQNIYWSDPKENVIEVARLT---GQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~~~I~v~~~d---g~~~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ++++...++.||.+-...+.|.+.+++   |.....+.. ..-..+..+++.|...+|+..+.  ...|...++.
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~g~v~~~~~~  179 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK--FGDVYSIDIN  179 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--TSEEEEEETT
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC--CCcEEEEecC
Confidence            788887777777777667888888876   444444332 22356789999997667776653  3455555543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.57  Score=47.13  Aligned_cols=208  Identities=13%  Similarity=0.108  Sum_probs=124.4

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      -..+.+++|.+..+.|+... ..+.|...++........+ .....+..+++.+.++.|+.+ ...+.|.+.++....  
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~--  107 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCS-KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG-SADYSIKLWDVSNGQ--  107 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEE-SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCC--
T ss_pred             eceEEEEEEcCCCCEEEEEe-CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc--
Confidence            35577888988666555554 4577887776544333333 344578889998877766544 556889888886532  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecC--CCCCceEEEeecCCCc--e----------EEEEc-CCCCCceEEEec
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN--SHLPSIQRAFFSGFGT--E----------SIITT-DITMPNALALDH  456 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~--~~~~~I~r~~ldG~~~--~----------~l~~~-~l~~P~glaiD~  456 (652)
                      ....  ......+..++++|...+|+.+...  ...+.|....+.....  .          .+... .......+++++
T Consensus       108 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (369)
T 3zwl_B          108 CVAT--WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST  185 (369)
T ss_dssp             EEEE--EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred             EEEE--eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence            2222  2355778999999987777766543  1112555555443321  1          11110 111567888888


Q ss_pred             CCCEEEEEeCCCCeEEEEecCC-CceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         457 QAEKLFWGDARLDKIERCDYDG-TNRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG-~~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .++.|+.+. ..+.|...++.. ......+........++++. .+.++++-...+.|...+..+++....+.
T Consensus       186 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          186 KGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             GGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            888777765 346888888876 33333333333456777775 23333444456677777777776655554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.73  E-value=0.19  Score=50.83  Aligned_cols=182  Identities=10%  Similarity=0.010  Sum_probs=107.9

Q ss_pred             EEEEEEEcCCCeEEEeec--------ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC----CCeEEEE
Q psy5768         316 IIELSYDYKRKTLFYSDI--------QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN----DATINKI  383 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~--------~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~----~~~I~~~  383 (652)
                      +..+.+  ..++|+|+-.        ....|+.+++++.....+    ..+..+++.+.++.|+++...    ...|+++
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~   90 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVA   90 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence            344444  3456766521        245688888877554444    456778999999999887643    3358888


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCC------------------------CCCceEEEeecCCCc-
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS------------------------HLPSIQRAFFSGFGT-  438 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~------------------------~~~~I~r~~ldG~~~-  438 (652)
                      ++.+..  .+.+....  . ..+++..|...+|+++....                        ....|++..+++... 
T Consensus        91 ~~~~g~--~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           91 DLETLS--SKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             ETTTTE--EEEEEEES--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             ECCCCc--eEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            876532  23333322  2 78899999888888875320                        013688888877655 


Q ss_pred             eEEEEcCCCCCceEEEecCCCEEEEEeCC--------CCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCC--
Q psy5768         439 ESIITTDITMPNALALDHQAEKLFWGDAR--------LDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWV--  508 (652)
Q Consensus       439 ~~l~~~~l~~P~glaiD~~~~~LYw~D~~--------~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~--  508 (652)
                      +.+.. .  ....+++.+++ .+|.+...        ...|+.++ .|. .+.+...  .....+.-++.+|++....  
T Consensus       166 ~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~~~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          166 EEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFYAVDSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEEEEEECSSCEEEEECCSS
T ss_pred             eeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC--cceeeECCCCCEEEEEEcccc
Confidence            44444 3  56788888776 55555332        34678887 443 3334332  2223334456677665432  


Q ss_pred             -----CCeEEEEE
Q psy5768         509 -----IHAVLRAN  516 (652)
Q Consensus       509 -----~~~I~~~~  516 (652)
                           ...|+..+
T Consensus       238 ~~~~~~~~l~~~d  250 (347)
T 2gop_A          238 KYMSEHNKLYIYD  250 (347)
T ss_dssp             SCCCSSCEEEEEC
T ss_pred             CCccccceEEEEC
Confidence                 34677777

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.72  E-value=0.19  Score=51.58  Aligned_cols=197  Identities=11%  Similarity=-0.004  Sum_probs=114.0

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.+++|.+..+.|.-.. ..+.|...++........+ .....+..|++.+.++.++.+-...++|.+.++.....  
T Consensus       140 ~~V~~v~~spdg~~l~sgs-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--  216 (357)
T 4g56_B          140 DIVKTLSVFSDGTQAVSGG-KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--  216 (357)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--
T ss_pred             CCEEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--
Confidence            4578899988766655444 4577877777644332233 33456788999888887888887788888777654321  


Q ss_pred             EEEEE-eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         393 IVVVR-LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       393 ~~~~~-~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ...+. ......+.+++.+|..+.++.+-...  ..|...++........+...-.....|++.+.++++..+-...+.|
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDET--GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEESS--SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEeecc--cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence            11111 12234578899999888777664332  2555555543322222222223457888887776654443445677


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEE
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~  516 (652)
                      ...|++......... ......+|++.  ++.++.|-...+.|..-+
T Consensus       295 ~iwd~~~~~~~~~~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          295 AVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEECTTSCEEEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEECCCCcEeEECC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            777877554333322 22345777774  344444444455554433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.72  E-value=0.23  Score=56.41  Aligned_cols=195  Identities=12%  Similarity=0.086  Sum_probs=119.4

Q ss_pred             cCCCeEEEeecc----cccEEEEeccCCcceEEeecc-------CceeeeEEEccCCEEEEEeCCCC----eEEEEEcCC
Q psy5768         323 YKRKTLFYSDIQ----KGTINSVFFNGSNHRVLLERQ-------GSVEGLAYEYVHNYLYWTCNNDA----TINKIDLDS  387 (652)
Q Consensus       323 ~~~~~lywsd~~----~~~I~~~~~~g~~~~~i~~~~-------~~~~glAvDw~~~~LYwtd~~~~----~I~~~~~~~  387 (652)
                      +..+++|++-..    ...|++....+...++++...       ....++++.+.++.|.++....+    .|.+.++.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            345667766432    235788877665556665211       13667899999998887654333    799999876


Q ss_pred             CCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC-------------CCceEEEeecCCCce-EEEEcC---CCCCc
Q psy5768         388 PKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-------------LPSIQRAFFSGFGTE-SIITTD---ITMPN  450 (652)
Q Consensus       388 ~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~-------------~~~I~r~~ldG~~~~-~l~~~~---l~~P~  450 (652)
                      ..  .... .... ....+++..|....||++.....             ..+|++..+.+...+ .++...   -.+..
T Consensus       161 g~--~~~~-~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~  236 (710)
T 2xdw_A          161 AK--ELPD-VLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG  236 (710)
T ss_dssp             TE--EEEE-EEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             CC--CCcc-cccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE
Confidence            32  1111 1111 23567999998888888764322             235888888655432 343222   12345


Q ss_pred             eEEEecCCCEEEEEeC-C---CCeEEEEecCC------C--ceEEEecCCCCceeEEEEeCCEEEEEcCC---CCeEEEE
Q psy5768         451 ALALDHQAEKLFWGDA-R---LDKIERCDYDG------T--NRIVLSKISPLHPFDMAVYGEFIFWTDWV---IHAVLRA  515 (652)
Q Consensus       451 glaiD~~~~~LYw~D~-~---~~~I~~~~ldG------~--~~~~l~~~~~~~p~glav~~~~lYwtd~~---~~~I~~~  515 (652)
                      ++++.+++++|++.-. .   ...|+.+++++      .  ..+.+..........+.-++++||+....   ...|+.+
T Consensus       237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence            8899999999988753 2   46899999875      3  34444443222333355568888876543   3478888


Q ss_pred             EccCCc
Q psy5768         516 NKYTGE  521 (652)
Q Consensus       516 ~k~~g~  521 (652)
                      +..++.
T Consensus       317 d~~~~~  322 (710)
T 2xdw_A          317 DFTDPE  322 (710)
T ss_dssp             ETTSCC
T ss_pred             eCCCCC
Confidence            876664

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.69  E-value=0.14  Score=54.00  Aligned_cols=196  Identities=10%  Similarity=0.055  Sum_probs=120.9

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcc--------eEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH--------RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~--------~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      .+.++++++....++.+-...+.|...+++....        ..+......+..+++.+.+++++.+....+.|.+.++.
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            4567788877664555555667788877764211        11113334688899988788888898889999999987


Q ss_pred             CCCCc-cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCC-CceEEEEcCCCCCceEEEecCCCEEEEE
Q psy5768         387 SPKAQ-RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF-GTESIITTDITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       387 ~~~~~-~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~-~~~~l~~~~l~~P~glaiD~~~~~LYw~  464 (652)
                      ..... ....+. .....++.|+++|...+++.+-...  +.|...++... .....+...-.....|++.+.++.++.+
T Consensus       263 ~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~d--g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          263 NNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             CSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETT--SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCC--CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            53211 111222 3456789999999877777765443  36666666542 2222233233456789999888887877


Q ss_pred             eCCCCeEEEEecCCC--------------ceEEEecCCCCceeEEEEeC--CEEEEEcCCCCeEE
Q psy5768         465 DARLDKIERCDYDGT--------------NRIVLSKISPLHPFDMAVYG--EFIFWTDWVIHAVL  513 (652)
Q Consensus       465 D~~~~~I~~~~ldG~--------------~~~~l~~~~~~~p~glav~~--~~lYwtd~~~~~I~  513 (652)
                      -...+.|...++...              ............+..+++..  .+++.+-...+.|.
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ  404 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence            766777888887641              12222222234577787763  33555555555443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.68  E-value=0.27  Score=50.49  Aligned_cols=178  Identities=7%  Similarity=0.028  Sum_probs=110.9

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC-C
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-K   82 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~-~   82 (652)
                      +++....+.|.++++............+    .-..+.++++.+.++.++++-  ...+.|..+++.+.....+.... .
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~  162 (383)
T 3ei3_B           89 VAVGSKGGDIILWDYDVQNKTSFIQGMG----PGDAITGMKFNQFNTNQLFVS--SIRGATTLRDFSGSVIQVFAKTDSW  162 (383)
T ss_dssp             EEEEEBTSCEEEEETTSTTCEEEECCCS----TTCBEEEEEEETTEEEEEEEE--ETTTEEEEEETTSCEEEEEECCCCS
T ss_pred             EEEEcCCCeEEEEeCCCcccceeeecCC----cCCceeEEEeCCCCCCEEEEE--eCCCEEEEEECCCCceEEEeccCCC
Confidence            4444456788999988655544443211    336889999999554444444  36788999999876544443322 0


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...+.    .+++....+.| ++-...+.|.+.+++++....+.. .......+++.|...+++.+-. ....|...++.
T Consensus       163 ~~~v~----~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~  235 (383)
T 3ei3_B          163 DYWYC----CVDVSVSRQML-ATGDSTGRLLLLGLDGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLR  235 (383)
T ss_dssp             SCCEE----EEEEETTTTEE-EEEETTSEEEEEETTSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGG
T ss_pred             CCCeE----EEEECCCCCEE-EEECCCCCEEEEECCCCEEEEecc-CCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCC
Confidence            13366    88888755544 444467899999998776655543 3467889999997663555533 24567776665


Q ss_pred             C----CCcEEEEeecccCceeEEEec-cCCEEEEEeCC
Q psy5768         163 G----KKQTILAQEIIMPIKDITLDL-KFFSAFYRNLS  195 (652)
Q Consensus       163 g----~~~~~~~~~~~~~p~gl~lD~-~~~~ly~~d~~  195 (652)
                      .    ....... ..-..+..+++++ .+..|+....+
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC
Confidence            3    1112112 2235678889888 66667666665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.67  E-value=1.3  Score=50.41  Aligned_cols=175  Identities=8%  Similarity=-0.037  Sum_probs=109.4

Q ss_pred             EEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           3 IAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      |++++ .++.|.+++.+ |+...++...       -..+.++++++..++|....   ..+.|..+++........+...
T Consensus        28 la~~~-~~g~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~   96 (814)
T 3mkq_A           28 VLTTL-YSGRVEIWNYETQVEVRSIQVT-------ETPVRAGKFIARKNWIIVGS---DDFRIRVFNYNTGEKVVDFEAH   96 (814)
T ss_dssp             EEEEE-TTSEEEEEETTTTEEEEEEECC-------SSCEEEEEEEGGGTEEEEEE---TTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEe-CCCEEEEEECCCCceEEEEecC-------CCcEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCcEEEEEecC
Confidence            44443 56789999965 5455555532       25789999999998888876   5688999998755433334444


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCC-cEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ-YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~-~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                       ...+.    .+++...+..|+.+. ..+.|.+.+++.. .....+.........++..|..|.++.+-. ....|...+
T Consensus        97 -~~~v~----~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd  169 (814)
T 3mkq_A           97 -PDYIR----SIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWS  169 (814)
T ss_dssp             -SSCEE----EEEECSSSSEEEEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEE
T ss_pred             -CCCEE----EEEEeCCCCEEEEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEE
Confidence             45567    888877555565444 5778999998765 444444444456789999985665555533 245777777


Q ss_pred             CCCCCcEEEEeec-ccCceeEEEec--cCCEEEEEeCC
Q psy5768         161 LDGKKQTILAQEI-IMPIKDITLDL--KFFSAFYRNLS  195 (652)
Q Consensus       161 ldg~~~~~~~~~~-~~~p~gl~lD~--~~~~ly~~d~~  195 (652)
                      +............ ......++..+  .+..|+....+
T Consensus       170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence            7654433322222 24456666665  44444444333

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.66  E-value=0.00057  Score=57.88  Aligned_cols=60  Identities=25%  Similarity=0.524  Sum_probs=36.7

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCcccCcccccCCCceeeccCeecC
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIP  607 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~g~Ci~  607 (652)
                      ..|..+||...+++|++.|+..+. +|+|.|+.||.+...++|.. ...|.. ...|. +.|+.
T Consensus        25 ~~Cd~neC~~~~~~C~~~C~n~~g-~y~C~C~~Gy~g~~g~~C~d-ideC~~-~~~C~-~~C~n   84 (107)
T 2w2n_E           25 GAMGTNECLDNNGGCSYVCNDLKI-GYECLCPDGFQLVAQRRCED-IDECQD-PDTCS-QLCVN   84 (107)
T ss_dssp             CCBSCCGGGTGGGGCSSEEECCSB-SCEEECCTTCEEETTTEEEC-------------------
T ss_pred             CCCcCccCcCCCCCCCCEeEeCCC-CeEEECCCCccccCCCcccc-ccccCC-CCCcC-Ceeec
Confidence            456779999888999999998776 69999999999864478874 445641 22354 45554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.58  E-value=0.76  Score=46.48  Aligned_cols=204  Identities=14%  Similarity=0.026  Sum_probs=120.0

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCc---ceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSN---HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~---~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      +.+++|++..+.|+... ..+.|+..++++..   ...+......+.+|++.+.++.|+.+. ..+.|.+.++....  .
T Consensus        11 i~~~~~s~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~   86 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRT--W   86 (372)
T ss_dssp             CCEEEECTTSSEEEEEC-SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTE--E
T ss_pred             eEEEEECCCCCEEEEEe-CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCe--e
Confidence            45677877666555543 35777777776653   222223445788999998777776554 55778877775421  1


Q ss_pred             EEEEE-eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE---cC-CCCCceEEEecCCCEEEEEeCC
Q psy5768         393 IVVVR-LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT---TD-ITMPNALALDHQAEKLFWGDAR  467 (652)
Q Consensus       393 ~~~~~-~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~---~~-l~~P~glaiD~~~~~LYw~D~~  467 (652)
                      ..... ......+.+++++|...+|+.....   +.|....++......+..   .. -..+..|++.+.++.|+.+. .
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  162 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-C  162 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETT---SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-T
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCC---CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-C
Confidence            22222 2344678899999987777776643   256666666554321111   11 23467889988777766654 3


Q ss_pred             CCeEEEEecC------------------CCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         468 LDKIERCDYD------------------GTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       468 ~~~I~~~~ld------------------G~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .+.|...++.                  .......+........++++.  +.+|+.. ...+.|...+..+++....+.
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECCCCceeEEEc
Confidence            4567777753                  112222222222446777775  3355444 456778777877777666655


Q ss_pred             c
Q psy5768         528 K  528 (652)
Q Consensus       528 ~  528 (652)
                      .
T Consensus       242 ~  242 (372)
T 1k8k_C          242 S  242 (372)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.56  E-value=0.39  Score=49.87  Aligned_cols=183  Identities=9%  Similarity=-0.024  Sum_probs=111.0

Q ss_pred             EEecCCCCeEEEEecCCC--------eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE
Q psy5768           4 AVSSPTQSKIVVCNLEGE--------YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE   75 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~   75 (652)
                      +++....+.|.++++...        ....+..       .-..+..|++++..+.++++-  ...+.|..+++......
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~  167 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-------HTKRVGIVAWHPTAQNVLLSA--GCDNVILVWDVGTGAAV  167 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-------CSSCEEEEEECSSBTTEEEEE--ETTSCEEEEETTTTEEE
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecC-------CCCeEEEEEECcCCCCEEEEE--cCCCEEEEEECCCCCcc
Confidence            333345677888887653        2334433       235789999999874444444  35688999998755433


Q ss_pred             EEE--eCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEE-eCC-CCCceeEEEcCCCCeEEEEec-
Q psy5768          76 TVV--SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI-SGG-VDQPSALAVDPESGYLFWSES-  150 (652)
Q Consensus        76 ~v~--~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~-~~~-~~~P~~iavd~~~g~lywtd~-  150 (652)
                      ..+  ... ...+.    .+++...++.|+.+ ...+.|.+.++........+ ... -..+..++..| +|.++.+-. 
T Consensus       168 ~~~~~~~~-~~~v~----~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~  240 (402)
T 2aq5_A          168 LTLGPDVH-PDTIY----SVDWSRDGALICTS-CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFS  240 (402)
T ss_dssp             EEECTTTC-CSCEE----EEEECTTSSCEEEE-ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEEC
T ss_pred             EEEecCCC-CCceE----EEEECCCCCEEEEE-ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEecc
Confidence            333  223 34566    88887745555444 46789999998755443333 222 22478899998 466655532 


Q ss_pred             -CCCCeEEEEeCCCCCc-EEEEe-ecccCceeEEEeccCCEEEEEeCCCCcEEEE
Q psy5768         151 -GKIPLIARAGLDGKKQ-TILAQ-EIIMPIKDITLDLKFFSAFYRNLSKGNIHII  202 (652)
Q Consensus       151 -~~~~~I~~~~ldg~~~-~~~~~-~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i  202 (652)
                       .....|...++..... ..... ..-..+..+++++.++.||.+....+..+..
T Consensus       241 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence             2345777777765332 22222 2234678899999999998877543555444

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.55  E-value=0.00086  Score=57.51  Aligned_cols=41  Identities=32%  Similarity=0.664  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccccc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEY  277 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~  277 (652)
                      .++|..+|++|+|.|+...++|+|.|+.|| +..++++|...
T Consensus        54 ~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             SSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred             CCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcC
Confidence            468998889999999988889999999998 55799999743

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=1  Score=47.48  Aligned_cols=199  Identities=10%  Similarity=-0.036  Sum_probs=120.8

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcce-----EEeeccCceeeeEEEcc---CCEEEEEeCCCCeEEEEEc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHR-----VLLERQGSVEGLAYEYV---HNYLYWTCNNDATINKIDL  385 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~-----~i~~~~~~~~glAvDw~---~~~LYwtd~~~~~I~~~~~  385 (652)
                      ..+.+++|++....|+..+. .+.|+.+++......     .+......+..|++.+.   ++.|+ +-...+.|.+.++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~  227 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADK-FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHY  227 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEEC
Confidence            45789999998888887765 577888886543222     22233457888999987   54554 5455678888887


Q ss_pred             CCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc---------------------
Q psy5768         386 DSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT---------------------  444 (652)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~---------------------  444 (652)
                      ....  ....+.......+.+++++ ...+|+.....   ..|...++........+..                     
T Consensus       228 ~~~~--~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          228 PQCF--IVDKWLFGHKHFVSSICCG-KDYLLLSAGGD---DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             SCTT--CEEEECCCCSSCEEEEEEC-STTEEEEEESS---SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             CCCc--eeeeeecCCCCceEEEEEC-CCCEEEEEeCC---CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence            6432  1222122334667899998 55666655432   2666666654332222220                     


Q ss_pred             ----CCCCCceEEEecCCCEEEEEeCCCCeEEEEec--CCC-ceEEE--ecCCCCceeEEEEeCCEEEEEcCCC------
Q psy5768         445 ----DITMPNALALDHQAEKLFWGDARLDKIERCDY--DGT-NRIVL--SKISPLHPFDMAVYGEFIFWTDWVI------  509 (652)
Q Consensus       445 ----~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~l--dG~-~~~~l--~~~~~~~p~glav~~~~lYwtd~~~------  509 (652)
                          .-....+|++.+.++.||.+-...+.|...++  ... ..+.+  +... ..+.++++..+.++.+--..      
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~  380 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQ  380 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSC
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCC
Confidence                01234578888888899988766778888887  322 11221  2223 67889999887776663221      


Q ss_pred             -C--eEEEEEccCCc
Q psy5768         510 -H--AVLRANKYTGE  521 (652)
Q Consensus       510 -~--~I~~~~k~~g~  521 (652)
                       +  .|+.++..+|.
T Consensus       381 ~~~i~v~~~~~~~~~  395 (450)
T 2vdu_B          381 KNFAKFIEYNLNENS  395 (450)
T ss_dssp             CCSEEEEEEETTTTE
T ss_pred             CcceEEEEEEcCCCe
Confidence             1  66777765554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.53  E-value=0.88  Score=46.59  Aligned_cols=165  Identities=14%  Similarity=0.046  Sum_probs=97.7

Q ss_pred             ceEEEEEEE----cCCCe-EEEeecccccEEEEeccC-------Ccce-----EEee-------ccCceeeeEEEccCCE
Q psy5768         314 KNIIELSYD----YKRKT-LFYSDIQKGTINSVFFNG-------SNHR-----VLLE-------RQGSVEGLAYEYVHNY  369 (652)
Q Consensus       314 ~~~~~v~~D----~~~~~-lywsd~~~~~I~~~~~~g-------~~~~-----~i~~-------~~~~~~glAvDw~~~~  369 (652)
                      ..+.+++|.    +..+. |+... ..+.|...++..       ....     .+..       ....+..+++.+.+  
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  198 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--  198 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--
T ss_pred             CcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--
Confidence            557889998    76666 55444 457777776654       2222     2211       24467889998876  


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCccEEEEEeCC-------CCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEE
Q psy5768         370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQ-------HDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESII  442 (652)
Q Consensus       370 LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~-------~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~  442 (652)
                      ++.+-...+.|.+.++...    +.+.....       .....+|+++|...+|+........+.|...++........+
T Consensus       199 ~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTL----RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             EEEEECTTSEEEEEETTTT----EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCcEEEEECCCC----ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence            5566667789999998642    33333333       567889999997776666543211125666665443332222


Q ss_pred             Ec-------------CCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEec
Q psy5768         443 TT-------------DITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK  486 (652)
Q Consensus       443 ~~-------------~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~  486 (652)
                      ..             .-.....+++.+.++.|+.+. ..+.|...++........+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEE
T ss_pred             ccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeEEEe
Confidence            22             223457889988877776654 45678888887554433333

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.51  E-value=0.45  Score=54.25  Aligned_cols=115  Identities=6%  Similarity=0.102  Sum_probs=71.2

Q ss_pred             eEEEEeCCCCE-EEEEecCCCCCceEEEeecCCC-------ceEEEEc-CCCC-----CceEEEecCCCEEE-EEe--CC
Q psy5768         405 RGIDIDSCDSR-IYWTNWNSHLPSIQRAFFSGFG-------TESIITT-DITM-----PNALALDHQAEKLF-WGD--AR  467 (652)
Q Consensus       405 ~~Iavdp~~g~-Lywtd~~~~~~~I~r~~ldG~~-------~~~l~~~-~l~~-----P~glaiD~~~~~LY-w~D--~~  467 (652)
                      ..++..|.... +|+...++....|...++++..       ...++.+ .-.|     +...+..+++++|+ |.-  .+
T Consensus       263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G  342 (740)
T 4a5s_A          263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG  342 (740)
T ss_dssp             EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred             EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence            45666775542 3445544433468888887765       2334322 2222     34677888888887 763  34


Q ss_pred             CCeEEEEecCCCceEEEecCCCCceeEE-EEeCCEEEEEcCC------CCeEEEEEccCC
Q psy5768         468 LDKIERCDYDGTNRIVLSKISPLHPFDM-AVYGEFIFWTDWV------IHAVLRANKYTG  520 (652)
Q Consensus       468 ~~~I~~~~ldG~~~~~l~~~~~~~p~gl-av~~~~lYwtd~~------~~~I~~~~k~~g  520 (652)
                      ...|+.++++|...+.+.... .....+ .+++++||++...      ...|++++..++
T Consensus       343 ~~~l~~~~~~~~~~~~lT~g~-~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~  401 (740)
T 4a5s_A          343 YRHICYFQIDKKDCTFITKGT-WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDY  401 (740)
T ss_dssp             CEEEEEEETTCSSCEESCCSS-SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred             ceEEEEEECCCCceEecccCC-EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence            568999999998877766543 222222 2558899998654      357888886544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.50  E-value=0.69  Score=52.32  Aligned_cols=197  Identities=12%  Similarity=0.074  Sum_probs=115.3

Q ss_pred             eEEEEEEEcCCCeEEEee-ccc---ccEEEEeccCCcceEE-eeccCceeeeEEEccCCEEEEEeCC------------C
Q psy5768         315 NIIELSYDYKRKTLFYSD-IQK---GTINSVFFNGSNHRVL-LERQGSVEGLAYEYVHNYLYWTCNN------------D  377 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd-~~~---~~I~~~~~~g~~~~~i-~~~~~~~~glAvDw~~~~LYwtd~~------------~  377 (652)
                      .+.++.+.+..++|-|+- ...   ..|+..++.+...... +.+. ...+++.. .++.||++...            .
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            355677777777666543 222   3577777776443222 2222 12455655 68888887654            2


Q ss_pred             CeEEEEEcCCCCCccEEEEEeCCCC----CceEEEEeCCCCEEEEEecCCC-CCceEEEeecCCC--ceEEEEcCCCCCc
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLGQHD----KPRGIDIDSCDSRIYWTNWNSH-LPSIQRAFFSGFG--TESIITTDITMPN  450 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~~~~----~P~~Iavdp~~g~Lywtd~~~~-~~~I~r~~ldG~~--~~~l~~~~l~~P~  450 (652)
                      .+|.+.++..... ...++. ....    .-.++++.|...+|+++..... ...|+...+++..  .+.|.. ....-.
T Consensus       208 ~~v~~~~lgt~~~-~~~~v~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~  284 (693)
T 3iuj_A          208 HKVYFHRLGTAQE-DDRLVF-GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADV  284 (693)
T ss_dssp             CEEEEEETTSCGG-GCEEEE-SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCE
T ss_pred             cEEEEEECCCCcc-cceEEE-ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceE
Confidence            4588877754321 123332 2222    2357889999889988765332 2388888887653  333332 221111


Q ss_pred             eEEEecCCCEEEEEeC---CCCeEEEEecCCCce---EEEecCCCCceeEEEEeCCEEEEEcCCCC--eEEEEEcc
Q psy5768         451 ALALDHQAEKLFWGDA---RLDKIERCDYDGTNR---IVLSKISPLHPFDMAVYGEFIFWTDWVIH--AVLRANKY  518 (652)
Q Consensus       451 glaiD~~~~~LYw~D~---~~~~I~~~~ldG~~~---~~l~~~~~~~p~glav~~~~lYwtd~~~~--~I~~~~k~  518 (652)
                      . .+++.+++||+.-.   ...+|..+++++...   +.+........ +++.++++|+++-...+  .|+..+..
T Consensus       285 ~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          285 S-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            1 25667899988743   357899999988654   55554332334 88888999888765443  56666654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.43  E-value=0.025  Score=61.48  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCC---------------------CCEEEEEEcCCCc--------EEEEEeC-----
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPK---------------------ENVIEVARLTGQY--------RYVLISG-----  128 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~---------------------~~~I~v~~~dg~~--------~~~l~~~-----  128 (652)
                      +.+|+    +++++..++.||++-++                     .++|.+..+++..        ...++.+     
T Consensus       383 mdRpE----di~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~  458 (592)
T 4a9v_A          383 MDRPE----WIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH  458 (592)
T ss_dssp             EECEE----EEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS
T ss_pred             ccCcc----ceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccc
Confidence            67799    99999999999998542                     2789999876421        2223221     


Q ss_pred             ---------------CCCCceeEEEcCCCCeEEE-EecCC----------CCeEEEEeCCCCCcEEEEee-cccCceeEE
Q psy5768         129 ---------------GVDQPSALAVDPESGYLFW-SESGK----------IPLIARAGLDGKKQTILAQE-IIMPIKDIT  181 (652)
Q Consensus       129 ---------------~~~~P~~iavd~~~g~lyw-td~~~----------~~~I~~~~ldg~~~~~~~~~-~~~~p~gl~  181 (652)
                                     .+..|..|++|+ .|.||+ ||-+.          +..+.+...+......++.. ....|+||+
T Consensus       459 ~~~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGia  537 (592)
T 4a9v_A          459 AGTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS  537 (592)
T ss_dssp             TTSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEE
T ss_pred             ccccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCE
Confidence                           267899999998 689999 88531          33788887754444444433 246799999


Q ss_pred             EeccCCEEEEE
Q psy5768         182 LDLKFFSAFYR  192 (652)
Q Consensus       182 lD~~~~~ly~~  192 (652)
                      +.+....||+.
T Consensus       538 fSPD~ktLfV~  548 (592)
T 4a9v_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.40  E-value=0.87  Score=45.10  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=103.5

Q ss_pred             CCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCc
Q psy5768           8 PTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAV   86 (652)
Q Consensus         8 ~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p   86 (652)
                      ...+.|.+++.. ++....+..       .-..+.++++++..+.|+-..   ..+.|..+++........+... ...+
T Consensus        42 ~~dg~i~iw~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~-~~~v  110 (312)
T 4ery_A           42 SADKLIKIWGAYDGKFEKTISG-------HKLGISDVAWSSDSNLLVSAS---DDKTLKIWDVSSGKCLKTLKGH-SNYV  110 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC-------CSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECC-SSCE
T ss_pred             eCCCeEEEEeCCCcccchhhcc-------CCCceEEEEEcCCCCEEEEEC---CCCEEEEEECCCCcEEEEEcCC-CCCE
Confidence            355677888775 444444432       235688999999888877665   5678888888754433334444 4456


Q ss_pred             cCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc
Q psy5768          87 TACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ  166 (652)
Q Consensus        87 ~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~  166 (652)
                      .    .+++....+.| .+-+..+.|.+.++........+.........+++.|...+|+....  ...|...++.....
T Consensus       111 ~----~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~  183 (312)
T 4ery_A          111 F----CCNFNPQSNLI-VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQC  183 (312)
T ss_dssp             E----EEEECSSSSEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCE
T ss_pred             E----EEEEcCCCCEE-EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCce
Confidence            6    77887654444 44445778988888754443333333345678999986555655543  45677766654332


Q ss_pred             -EEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         167 -TILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       167 -~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                       ..+..........+++++.+..|+....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          184 LKTLIDDDNPPVSFVKFSPNGKYILAATLD  213 (312)
T ss_dssp             EEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence             22222223345667888777766666555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.38  E-value=0.34  Score=48.89  Aligned_cols=188  Identities=11%  Similarity=-0.008  Sum_probs=106.1

Q ss_pred             EEEEEEEcCCCeEEEeecc----cccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCC---------------
Q psy5768         316 IIELSYDYKRKTLFYSDIQ----KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNN---------------  376 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~----~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~---------------  376 (652)
                      +..+.+.+..++|+++...    ...|+.+++++.....+...-. +.++++.+.++.|+++...               
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            4567788888888877543    3458888887765555543323 7788888889988887532               


Q ss_pred             -----------CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC------CCceEEEeecCCCce
Q psy5768         377 -----------DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH------LPSIQRAFFSGFGTE  439 (652)
Q Consensus       377 -----------~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~------~~~I~r~~ldG~~~~  439 (652)
                                 ...|.++++.+..  ....+.. .  ....++..|.. .+|.+.....      ...|+... .| ..+
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~~  211 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG-KEE  211 (347)
T ss_dssp             C---------CEEEEEEEETTTTE--EEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT-EEE
T ss_pred             eecCcccccCccceEEEEECCCCe--EEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC-ceE
Confidence                       3568888876532  2123332 2  67889999965 6665544321      23677766 33 333


Q ss_pred             EEEEcCCCCCceEEEecCCCEEEEEeCC-------CCeEEEEecCCCceEEEecCCCCceeE-EEEeCCEEEEEcCCC--
Q psy5768         440 SIITTDITMPNALALDHQAEKLFWGDAR-------LDKIERCDYDGTNRIVLSKISPLHPFD-MAVYGEFIFWTDWVI--  509 (652)
Q Consensus       440 ~l~~~~l~~P~glaiD~~~~~LYw~D~~-------~~~I~~~~ldG~~~~~l~~~~~~~p~g-lav~~~~lYwtd~~~--  509 (652)
                      .+...  ....  .+.+++++|+++...       ...|..++ .| ..+.+.........+ +++. +.+|++....  
T Consensus       212 ~l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~  284 (347)
T 2gop_A          212 KMFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK-EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGS  284 (347)
T ss_dssp             EEEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS-CEEESSTTCCSEEEEEEEET-TEEEEEEEETTE
T ss_pred             EeccC--ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CC-ceEeccccCCcccCCccEEc-CcEEEEEecCCc
Confidence            44332  2222  236678888877532       35788888 44 333333322122333 4444 4366653333  


Q ss_pred             CeEEEEEccCCce
Q psy5768         510 HAVLRANKYTGEE  522 (652)
Q Consensus       510 ~~I~~~~k~~g~~  522 (652)
                      ..|+ ++  +|+.
T Consensus       285 ~~l~-~~--~g~~  294 (347)
T 2gop_A          285 VNLY-IW--DGEI  294 (347)
T ss_dssp             EEEE-EE--SSSE
T ss_pred             EEEE-Ec--CCce
Confidence            3466 65  4544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.34  E-value=0.52  Score=47.73  Aligned_cols=173  Identities=8%  Similarity=-0.039  Sum_probs=101.9

Q ss_pred             EecCCCCeEEEEecCCC---eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE-EEE-e
Q psy5768           5 VSSPTQSKIVVCNLEGE---YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE-TVV-S   79 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~-~v~-~   79 (652)
                      ++....+.|+++++++.   ....+..       .-..+.++++++....|+...   ..+.|..+++...... .+. .
T Consensus        24 ~~~~~d~~v~i~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           24 AICPNNHEVHIYEKSGNKWVQVHELKE-------HNGQVTGVDWAPDSNRIVTCG---TDRNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEEEC-------CSSCEEEEEEETTTTEEEEEE---TTSCEEEEEEETTEEEEEEECC
T ss_pred             EEEeCCCEEEEEeCCCCcEEeeeeecC-------CCCcccEEEEeCCCCEEEEEc---CCCeEEEEECCCCeeeeeEEee
Confidence            33345788999998876   3444443       235789999999888887665   5577888887654322 222 2


Q ss_pred             CCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc----EEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5768          80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY----RYVLISGGVDQPSALAVDPESGYLFWSESGKIPL  155 (652)
Q Consensus        80 ~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~----~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~  155 (652)
                      .. ...+.    .+++...++.|+.+. ..+.|.+.+++...    ...+..........+++.|...+|+....  ...
T Consensus        94 ~~-~~~v~----~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~  165 (372)
T 1k8k_C           94 RI-NRAAR----CVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFK  165 (372)
T ss_dssp             CC-SSCEE----EEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSC
T ss_pred             cC-CCcee----EEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC--CCC
Confidence            22 34466    788876555555544 56778777776543    22222222456789999995555555443  345


Q ss_pred             EEEEeCC------------------CCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         156 IARAGLD------------------GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       156 I~~~~ld------------------g~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      |...++.                  .......+...-..+..+++++.+..|+....+
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            5555532                  111111111123456788888777777666655

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.24  E-value=0.0016  Score=60.21  Aligned_cols=41  Identities=27%  Similarity=0.662  Sum_probs=35.2

Q ss_pred             CCCCCCCCCCC---CcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         236 GTNPCGVNNGG---CAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       236 ~~n~C~~~ng~---Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      +.++|...+++   |+|.|...+++|+|.|+.|| |..|+++|..
T Consensus       123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCcccc
Confidence            46889987766   99999988889999999998 6679999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.18  E-value=0.79  Score=46.91  Aligned_cols=200  Identities=10%  Similarity=0.036  Sum_probs=116.3

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee--------------ccCceeeeEEEccCCEEEEEeCCCCe
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE--------------RQGSVEGLAYEYVHNYLYWTCNNDAT  379 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~--------------~~~~~~glAvDw~~~~LYwtd~~~~~  379 (652)
                      ..+.+++|.+.++.++++-...+.|...+++.........              ....+..|++.+..+.++.+-...+.
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  123 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT  123 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence            4578899998444555554456778888876533221111              33467888888756666667777788


Q ss_pred             EEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCC---EEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEec
Q psy5768         380 INKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS---RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH  456 (652)
Q Consensus       380 I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g---~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~  456 (652)
                      |.+.++...    +.+...........+++.|...   +++.....   +.|...++........+...-.....+++.+
T Consensus       124 i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          124 LKVWDTNTL----QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG---PKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             EEEEETTTT----EEEEEEECSSCEEEEEECSSCSSCCEEEEEESS---SSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             EEEeeCCCC----ccceeccCCCceeeeEeecCCCCCcEEEEEcCC---CeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence            998888653    2333333445677888887543   44444432   3666666654443333332334567899998


Q ss_pred             CCCEEEEEeCCCCeEEEEecCCCce-EEEe---------------cCCCCceeEEEEeC--CEEEEEcCCCCeEEEEEcc
Q psy5768         457 QAEKLFWGDARLDKIERCDYDGTNR-IVLS---------------KISPLHPFDMAVYG--EFIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG~~~-~~l~---------------~~~~~~p~glav~~--~~lYwtd~~~~~I~~~~k~  518 (652)
                      .+..|+.+-...+.|...++..... ...+               ........++++..  .+|+... ..+.|...+..
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~  275 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSS  275 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECC
Confidence            8886666555667788888764331 1111               11123356677753  3454443 45566666665


Q ss_pred             CCc
Q psy5768         519 TGE  521 (652)
Q Consensus       519 ~g~  521 (652)
                      +++
T Consensus       276 ~~~  278 (408)
T 4a11_B          276 NGE  278 (408)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.17  E-value=0.63  Score=53.22  Aligned_cols=199  Identities=6%  Similarity=-0.002  Sum_probs=116.4

Q ss_pred             eEEEEEEE-cCCCeEEEeeccc----ccEEEEeccCC-cc-eEEeeccCceeeeEEEccCCEEEEEeCCC----CeEEEE
Q psy5768         315 NIIELSYD-YKRKTLFYSDIQK----GTINSVFFNGS-NH-RVLLERQGSVEGLAYEYVHNYLYWTCNND----ATINKI  383 (652)
Q Consensus       315 ~~~~v~~D-~~~~~lywsd~~~----~~I~~~~~~g~-~~-~~i~~~~~~~~glAvDw~~~~LYwtd~~~----~~I~~~  383 (652)
                      ...++.+. +..++|.|+....    ..|+..++++. .. ...++.  ...+++..+.++.||++....    .+|.+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--TNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            34567777 7777777664433    24888888765 31 111111  134677777788888876532    368888


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC--c--eEEEEcCCCCCceEEEe-cCC
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG--T--ESIITTDITMPNALALD-HQA  458 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~--~--~~l~~~~l~~P~glaiD-~~~  458 (652)
                      ++.+.......+........-.++++.|...+|+|+.+......|+...+++..  .  +.+.. ....+ -..+| ..+
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~-~~s~~~~~g  330 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGV-RYDVQMHGT  330 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTC-CEEEEEETT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCc-eEEEeeeeC
Confidence            886532112233322222334567899999999998765444588888888653  2  22222 11112 23455 458


Q ss_pred             CEEEEEeC----CCCeEEEEecCC-Cc-eE-EEecCCCCceeEEEEeCCEEEEEcCCCC--eEEEEEc
Q psy5768         459 EKLFWGDA----RLDKIERCDYDG-TN-RI-VLSKISPLHPFDMAVYGEFIFWTDWVIH--AVLRANK  517 (652)
Q Consensus       459 ~~LYw~D~----~~~~I~~~~ldG-~~-~~-~l~~~~~~~p~glav~~~~lYwtd~~~~--~I~~~~k  517 (652)
                      ++|||.-.    ...+|..+++++ .. +. ++.........+++.++++||++-...+  .|+.++.
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            88888732    345899999985 33 33 3333221234567778888888755443  5666664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.17  E-value=0.41  Score=48.95  Aligned_cols=169  Identities=10%  Similarity=0.020  Sum_probs=101.4

Q ss_pred             ecCCCCeEEEEecCC-CeeEEEe-cCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc
Q psy5768           6 SSPTQSKIVVCNLEG-EYQTTIL-SNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY   83 (652)
Q Consensus         6 ~~~~~~~I~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~   83 (652)
                      +....+.|+++|++. +....+. ...+    .-..+.+|+|++...+|.-..   ..+.|..+++........+... .
T Consensus        98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~----H~~~V~~v~~spdg~~l~sgs---~d~~i~iwd~~~~~~~~~~~~h-~  169 (344)
T 4gqb_B           98 VASDSGAVELWELDENETLIVSKFCKYE----HDDIVSTVSVLSSGTQAVSGS---KDICIKVWDLAQQVVLSSYRAH-A  169 (344)
T ss_dssp             EEETTSEEEEEEECTTSSCEEEEEEEEC----CSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCC-S
T ss_pred             EEECCCEEEEEeccCCCceeEeeccccC----CCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCCCcEEEEEcCc-C
Confidence            334567888888764 3332221 1111    235789999999877777554   5678988988754333333444 4


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc-EEEEEe-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~-~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                      ..+.    .+++......++.+-+..+.|.+-|+.... ...+.. .....+..++..|.++.++.+-. ....|...++
T Consensus       170 ~~V~----~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~  244 (344)
T 4gqb_B          170 AQVT----CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDT  244 (344)
T ss_dssp             SCEE----EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEES
T ss_pred             CceE----EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEEC
Confidence            5567    888877677787777677888888876433 333321 12235778999998888777633 2456777676


Q ss_pred             CCCC-cEEEEeecccCceeEEEeccCCE
Q psy5768         162 DGKK-QTILAQEIIMPIKDITLDLKFFS  188 (652)
Q Consensus       162 dg~~-~~~~~~~~~~~p~gl~lD~~~~~  188 (652)
                      .... ...+. .--...+.|++.+.+.+
T Consensus       245 ~~~~~~~~~~-~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          245 KSTSCVLSSA-VHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             CC--CCEEEE-CCSSCEEEEEECSSSSC
T ss_pred             CCCcEEEEEc-CCCCCEEEEEEccCCCe
Confidence            5332 33322 22345567777665544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.16  E-value=1.5  Score=45.36  Aligned_cols=227  Identities=8%  Similarity=-0.027  Sum_probs=132.3

Q ss_pred             EEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCce
Q psy5768         280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSV  358 (652)
Q Consensus       280 ~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~  358 (652)
                      ++..+....|+..++..+ .   ....+.. .+-..+.+++|.+....|+... ..+.|...++........+ .....+
T Consensus       106 l~~~~~d~~v~lw~~~~~-~---~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v  179 (401)
T 4aez_A          106 VVAVALERNVYVWNADSG-S---VSALAET-DESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQTKLRTMAGHQARV  179 (401)
T ss_dssp             EEEEEETTEEEEEETTTC-C---EEEEEEC-CTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             EEEEECCCeEEEeeCCCC-c---EeEeeec-CCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCeEEEEecCCCCce
Confidence            344445555666665222 1   1122221 1234578899998666665554 4577888887654333233 333456


Q ss_pred             eeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCc
Q psy5768         359 EGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT  438 (652)
Q Consensus       359 ~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~  438 (652)
                      ..++++  ++ ++.+-...+.|.+.++....  ..............+++++|...+|+.....   ..|...++.....
T Consensus       180 ~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~  251 (401)
T 4aez_A          180 GCLSWN--RH-VLSSGSRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGND---NVVQIWDARSSIP  251 (401)
T ss_dssp             EEEEEE--TT-EEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTCSSE
T ss_pred             EEEEEC--CC-EEEEEcCCCCEEEEecccCc--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC---CeEEEccCCCCCc
Confidence            666653  44 45566667899998886322  1222222445678899999966666655443   2566666654433


Q ss_pred             eEEEEcCCCCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEE-cCCCCeEE
Q psy5768         439 ESIITTDITMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWT-DWVIHAVL  513 (652)
Q Consensus       439 ~~l~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwt-d~~~~~I~  513 (652)
                      ...+...-.....+++.+.+..|+.+-.  ..+.|...++........+... ....++++.  +.+|+.+ ....+.|.
T Consensus       252 ~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred             cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEECCCCCeEEEEeecCCCcEE
Confidence            3333333446689999988888887754  5678999998765554444432 456777775  4466655 33456666


Q ss_pred             EEEccCCc
Q psy5768         514 RANKYTGE  521 (652)
Q Consensus       514 ~~~k~~g~  521 (652)
                      ..+..++.
T Consensus       331 v~~~~~~~  338 (401)
T 4aez_A          331 IWSYSSSG  338 (401)
T ss_dssp             EEEEETTE
T ss_pred             EEecCCcc
Confidence            66655543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.12  E-value=0.21  Score=50.03  Aligned_cols=166  Identities=10%  Similarity=0.112  Sum_probs=101.0

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      |+|++ ..+.|+.++.+|+.........       ..+.++.++ .++.||+..   ..+.|++++.+|...... ... 
T Consensus       110 l~v~t-~~~~l~~~d~~g~~~~~~~~~~-------~~~~~~~~~-~~g~l~vgt---~~~~l~~~d~~g~~~~~~-~~~-  175 (330)
T 3hxj_A          110 LYVTS-MDGHLYAINTDGTEKWRFKTKK-------AIYATPIVS-EDGTIYVGS---NDNYLYAINPDGTEKWRF-KTN-  175 (330)
T ss_dssp             EEEEC-TTSEEEEECTTSCEEEEEECSS-------CCCSCCEEC-TTSCEEEEC---TTSEEEEECTTSCEEEEE-ECS-
T ss_pred             EEEEe-cCCEEEEEcCCCCEEEEEcCCC-------ceeeeeEEc-CCCEEEEEc---CCCEEEEECCCCCEeEEE-ecC-
Confidence            45554 3578889998876554444311       123334555 357788765   457899998885543333 222 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      .....    .+++|. .++||++.   +.|.+.+.+|+...... ........+++|+ +|.||....  ...|.+.+.+
T Consensus       176 ~~~~~----~~~~d~-~g~l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~  243 (330)
T 3hxj_A          176 DAITS----AASIGK-DGTIYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISE-DGTIYVTSL--DGHLYAINPD  243 (330)
T ss_dssp             SCCCS----CCEECT-TCCEEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECT-TSCEEEEET--TTEEEEECTT
T ss_pred             CCcee----eeEEcC-CCEEEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECC-CCeEEEEcC--CCeEEEECCC
Confidence            23455    788874 67788876   77888887776544332 2235678899997 688988864  3477777666


Q ss_pred             CCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         163 GKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       163 g~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      |.....+. ..-..+..+++| .+++||+...+|
T Consensus       244 g~~~~~~~-~~~~~~~~~~~~-~~g~l~v~t~~g  275 (330)
T 3hxj_A          244 GTEKWRFK-TGKRIESSPVIG-NTDTIYFGSYDG  275 (330)
T ss_dssp             SCEEEEEE-CSSCCCSCCEEC-TTSCEEEECTTC
T ss_pred             CCEeEEee-CCCCccccceEc-CCCeEEEecCCC
Confidence            65443322 222234556666 356787766653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.09  E-value=1  Score=44.74  Aligned_cols=181  Identities=12%  Similarity=0.145  Sum_probs=105.6

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCc
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKP  404 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P  404 (652)
                      .+.||+... .+.|++++.+|...............+++|. .++||+.. ..+.|.+++..+.   ...... ......
T Consensus       107 ~~~l~v~t~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt-~~~~l~~~d~~g~---~~~~~~-~~~~~~  179 (330)
T 3hxj_A          107 EDILYVTSM-DGHLYAINTDGTEKWRFKTKKAIYATPIVSE-DGTIYVGS-NDNYLYAINPDGT---EKWRFK-TNDAIT  179 (330)
T ss_dssp             TTEEEEECT-TSEEEEECTTSCEEEEEECSSCCCSCCEECT-TSCEEEEC-TTSEEEEECTTSC---EEEEEE-CSSCCC
T ss_pred             CCEEEEEec-CCEEEEEcCCCCEEEEEcCCCceeeeeEEcC-CCEEEEEc-CCCEEEEECCCCC---EeEEEe-cCCCce
Confidence            677777653 4678888877543222222223455677775 44566654 4477888876531   222222 223455


Q ss_pred             eEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEE
Q psy5768         405 RGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVL  484 (652)
Q Consensus       405 ~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l  484 (652)
                      .++++|+ .|.||++.     ..|.+.+.+|...... ......+.++++|.. ++||.+.. .+.|..++.+|.....+
T Consensus       180 ~~~~~d~-~g~l~v~t-----~~l~~~d~~g~~~~~~-~~~~~~~~~~~~~~~-g~l~v~t~-~~gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          180 SAASIGK-DGTIYFGS-----DKVYAINPDGTEKWNF-YAGYWTVTRPAISED-GTIYVTSL-DGHLYAINPDGTEKWRF  250 (330)
T ss_dssp             SCCEECT-TCCEEEES-----SSEEEECTTSCEEEEE-CCSSCCCSCCEECTT-SCEEEEET-TTEEEEECTTSCEEEEE
T ss_pred             eeeEEcC-CCEEEEEe-----CEEEEECCCCcEEEEE-ccCCcceeceEECCC-CeEEEEcC-CCeEEEECCCCCEeEEe
Confidence            6778886 67888876     2777777544322111 112234678888854 57887754 45788888777655444


Q ss_pred             ecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEE
Q psy5768         485 SKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVY  524 (652)
Q Consensus       485 ~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~  524 (652)
                      .... ..+.+++++ ++.||.... .+.|+++++ +|+...
T Consensus       251 ~~~~-~~~~~~~~~~~g~l~v~t~-~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          251 KTGK-RIESSPVIGNTDTIYFGSY-DGHLYAINP-DGTEKW  288 (330)
T ss_dssp             ECSS-CCCSCCEECTTSCEEEECT-TCEEEEECT-TSCEEE
T ss_pred             eCCC-CccccceEcCCCeEEEecC-CCCEEEECC-CCcEEE
Confidence            3322 233456666 678887764 457888886 565433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.05  E-value=1.4  Score=50.03  Aligned_cols=197  Identities=17%  Similarity=0.139  Sum_probs=117.5

Q ss_pred             eEEEEEEEcCCCeEEEeeccc----ccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCC------------
Q psy5768         315 NIIELSYDYKRKTLFYSDIQK----GTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNND------------  377 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~----~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~------------  377 (652)
                      ...++.+.+..++|.++....    ..|+..++++....... ... ...+++..+. +.||++....            
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            355778888888877764332    35888888765432221 211 1246677666 7888876432            


Q ss_pred             -CeEEEEEcCCCCCccEEEEEeCCCC---CceEEEEeCCCCEEEEEecCC--CCCceEEEeecCC--C-ceEEEEcCCCC
Q psy5768         378 -ATINKIDLDSPKAQRIVVVRLGQHD---KPRGIDIDSCDSRIYWTNWNS--HLPSIQRAFFSGF--G-TESIITTDITM  448 (652)
Q Consensus       378 -~~I~~~~~~~~~~~~~~~~~~~~~~---~P~~Iavdp~~g~Lywtd~~~--~~~~I~r~~ldG~--~-~~~l~~~~l~~  448 (652)
                       .+|.+.++.+... ...++. ....   .-.+++++|...+|+++....  ....|+..++++.  . .+.|.. ....
T Consensus       242 ~~~v~~~~lgt~~~-~~~lv~-~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~  318 (741)
T 1yr2_A          242 NQTVWLHRLGTPQS-ADQPVF-ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKA  318 (741)
T ss_dssp             CCEEEEEETTSCGG-GCEEEE-CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSS
T ss_pred             CCEEEEEECCCCch-hCEEEe-ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCc
Confidence             3588888754221 122332 2222   246889999888888876532  2348999888876  4 444443 2222


Q ss_pred             CceEEEecCCCEEEEEeC---CCCeEEEEecCCC--ceEEEecCCCCceeEEEEeCCEEEEEcCCCC--eEEEEEc
Q psy5768         449 PNALALDHQAEKLFWGDA---RLDKIERCDYDGT--NRIVLSKISPLHPFDMAVYGEFIFWTDWVIH--AVLRANK  517 (652)
Q Consensus       449 P~glaiD~~~~~LYw~D~---~~~~I~~~~ldG~--~~~~l~~~~~~~p~glav~~~~lYwtd~~~~--~I~~~~k  517 (652)
                      .... +++.+++||+.-.   ...+|..+++++.  ..+.++........++++++++|+++-...+  .|+.++.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEET
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence            2222 3567899998743   3567999999873  4455554332334567778888888764443  5666664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.01  E-value=0.65  Score=52.89  Aligned_cols=193  Identities=9%  Similarity=0.085  Sum_probs=114.4

Q ss_pred             cCCCeEEEeecc----cccEEEEecc---CCcceEEeecc-------CceeeeEEEccCCEEEEEeCCC----CeEEEEE
Q psy5768         323 YKRKTLFYSDIQ----KGTINSVFFN---GSNHRVLLERQ-------GSVEGLAYEYVHNYLYWTCNND----ATINKID  384 (652)
Q Consensus       323 ~~~~~lywsd~~----~~~I~~~~~~---g~~~~~i~~~~-------~~~~glAvDw~~~~LYwtd~~~----~~I~~~~  384 (652)
                      +..+++|++-..    ...|++....   +...++++...       ....++++.+.++.|.++....    ..|.+.+
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            445677776432    2457888776   55556654211       1466788998999887765432    3588899


Q ss_pred             cCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC-----------CCceEEEeecCCCc-eEEEEcCCC---CC
Q psy5768         385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-----------LPSIQRAFFSGFGT-ESIITTDIT---MP  449 (652)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~-----------~~~I~r~~ldG~~~-~~l~~~~l~---~P  449 (652)
                      +.+..  .... .... ....+++..|. ..||++.....           ..+|++..+.+... ..++...-.   +-
T Consensus       196 l~tg~--~~~~-~~~~-~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          196 VADGK--PLAD-ELKW-VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG  270 (741)
T ss_dssp             TTTCC--EEEE-EEEE-EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             CCCCC--CCCc-cCCC-ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence            87643  1111 1111 11246888898 88888764322           23588888754432 233333222   34


Q ss_pred             ceEEEecCCCEEEEEeC----CCCeEEEEecCCC--c-eEEEecCCCCceeEEEEeCCEEEEEcCC---CCeEEEEEccC
Q psy5768         450 NALALDHQAEKLFWGDA----RLDKIERCDYDGT--N-RIVLSKISPLHPFDMAVYGEFIFWTDWV---IHAVLRANKYT  519 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~----~~~~I~~~~ldG~--~-~~~l~~~~~~~p~glav~~~~lYwtd~~---~~~I~~~~k~~  519 (652)
                      .++++.++++.|++.-.    ....|+.+++++.  . .+.+.......-..+.-++++||+....   +..|++++..+
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            57888888888887653    2458999999876  4 4455443212222234568888776432   45799888766


Q ss_pred             C
Q psy5768         520 G  520 (652)
Q Consensus       520 g  520 (652)
                      +
T Consensus       351 ~  351 (741)
T 1yr2_A          351 S  351 (741)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.97  E-value=1  Score=44.93  Aligned_cols=200  Identities=12%  Similarity=0.030  Sum_probs=113.5

Q ss_pred             ceEEEEEEEcCCC-eEEEeecccccEEEEec-cCCcceEEee--ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy5768         314 KNIIELSYDYKRK-TLFYSDIQKGTINSVFF-NGSNHRVLLE--RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       314 ~~~~~v~~D~~~~-~lywsd~~~~~I~~~~~-~g~~~~~i~~--~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      ..+.+++|.+..+ .|+... ..+.|...++ ++.....+..  ....+..|++.. ++.|+ +-...+.|.+.++....
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~-s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLI-AASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEE-EEETTSEEEEECHHHHT
T ss_pred             CceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEE-EEcCCCeEEEEcccccc
Confidence            5578899998766 566555 4578988888 7654433334  555788999998 55554 55567888887765310


Q ss_pred             Ccc----E-EEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC-CCc-eEEEEcC-CCCCceEEEec-CCCE
Q psy5768         390 AQR----I-VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG-FGT-ESIITTD-ITMPNALALDH-QAEK  460 (652)
Q Consensus       390 ~~~----~-~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG-~~~-~~l~~~~-l~~P~glaiD~-~~~~  460 (652)
                      ...    . .+........+.+++++|..  |+.....   ..|...++.. ... ....... -..+..+++.+ .++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~  208 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNN---SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEEST---TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             cccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCC---CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE
Confidence            000    0 01111233577889998854  5555433   3666666665 222 2222222 23467888887 6666


Q ss_pred             EEEEeCCCCeEEEEecCCC------ceEEEecCCCC---------ceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceE
Q psy5768         461 LFWGDARLDKIERCDYDGT------NRIVLSKISPL---------HPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEV  523 (652)
Q Consensus       461 LYw~D~~~~~I~~~~ldG~------~~~~l~~~~~~---------~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~  523 (652)
                      |+.+. ..+.|...+++..      .....+.....         ...++++.  +.+|+ +-...+.|...+..+++..
T Consensus       209 l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          209 YACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEEE
T ss_pred             EEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE-EecCCceEEEEcCccHhHh
Confidence            66554 4567777666543      22222222211         45666665  33444 4445566776776666543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=95.93  E-value=0.06  Score=58.58  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccC-------------------CcceEEEEEcCCCc-------cEEEEeCC--------
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTK-------------------QVVTIEMAFMDGTK-------RETVVSQK--------   81 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~-------------------~~~~I~~~~~dgs~-------~~~v~~~~--------   81 (652)
                      .+.+|.+|+++|.+++||++=.+.                   ..+.|+|+..++..       .+.++..+        
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            456899999999999999974111                   13679999986532       34444221        


Q ss_pred             ------------CcCCccCCCCcEEEEccCCcEEE-EeCC-----------CCEEEEEEcC-CCcEEEEEeCCCCCceeE
Q psy5768          82 ------------KYPAVTACNLHIAVDWIAQNIYW-SDPK-----------ENVIEVARLT-GQYRYVLISGGVDQPSAL  136 (652)
Q Consensus        82 ------------~~~~p~~~~~~lavDw~~~~lY~-~d~~-----------~~~I~v~~~d-g~~~~~l~~~~~~~P~~i  136 (652)
                                  .+..|.    +|++|. .++||+ +|..           .+.+.+.+.+ |+.++++.......|.+|
T Consensus       462 ~~~g~~~~~~~~~fnsPD----nL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGi  536 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPD----GLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI  536 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEE----EEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEE
T ss_pred             cccCccCccccCccCCCC----ceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCC
Confidence                        156688    999996 688999 8864           3378888885 555544432345689999


Q ss_pred             EEcCCCCeEEEEecC
Q psy5768         137 AVDPESGYLFWSESG  151 (652)
Q Consensus       137 avd~~~g~lywtd~~  151 (652)
                      ++.|....||++-.+
T Consensus       537 afSPD~ktLfV~vQH  551 (592)
T 4a9v_A          537 SFSPDQKTLFVGIQH  551 (592)
T ss_dssp             EECTTSSEEEEEEES
T ss_pred             EECCCCCEEEEEEeC
Confidence            999999999998643

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=95.92  E-value=0.0052  Score=68.07  Aligned_cols=48  Identities=31%  Similarity=0.673  Sum_probs=41.0

Q ss_pred             eccCceeeccC-CcccCcccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         573 SCFTGKVLMED-NRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       573 ~Cp~g~~l~~d-~~C~~~~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      .|++|    +| ..|..    |.+.+|.|.++.|++..+.|||..||.||+||..  |.
T Consensus       228 dC~d~----sDE~~C~~----c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~--C~  276 (565)
T 2xrc_A          228 DCGDQ----SDELCCKA----CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVG--CA  276 (565)
T ss_dssp             CSSSS----SSSSSBSS----CSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSS--CC
T ss_pred             cCCCC----cccccccc----cCCCceecCCCcccCccccCCCcccCCCCccccC--cC
Confidence            47777    56 55643    8889999999999999999999999999999976  64

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.89  E-value=0.86  Score=47.14  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=101.3

Q ss_pred             EecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCC-ccEEEEeCCCc
Q psy5768           5 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT-KRETVVSQKKY   83 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs-~~~~v~~~~~~   83 (652)
                      ++....+.|.+++++..........      ....+.++++++.+..|+-..   ..+.|+.+++... ....+ ... .
T Consensus       113 ~~~~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~-~~h-~  181 (420)
T 3vl1_A          113 ILGTTEGDIKVLDSNFNLQREIDQA------HVSEITKLKFFPSGEALISSS---QDMQLKIWSVKDGSNPRTL-IGH-R  181 (420)
T ss_dssp             EEEETTSCEEEECTTSCEEEEETTS------SSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCCCEEE-ECC-S
T ss_pred             EEEECCCCEEEEeCCCcceeeeccc------ccCccEEEEECCCCCEEEEEe---CCCeEEEEeCCCCcCceEE-cCC-C
Confidence            3334567788888886655554321      336889999999877777655   5688999998744 33443 444 4


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCC------------------------CCCceeEEEc
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG------------------------VDQPSALAVD  139 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~------------------------~~~P~~iavd  139 (652)
                      ..+.    ++++...++.|+ +-+..+.|.+.++........+...                        ......++++
T Consensus       182 ~~v~----~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          182 ATVT----DIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             SCEE----EEEEETTTTEEE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             CcEE----EEEEcCCCCEEE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            5577    888887555554 4445678888887654333333211                        1233445556


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec-ccCceeEEEeccCC-EEEEEeCC
Q psy5768         140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-IMPIKDITLDLKFF-SAFYRNLS  195 (652)
Q Consensus       140 ~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~-~~~p~gl~lD~~~~-~ly~~d~~  195 (652)
                      |...+|+...  ..+.|...++........+... -.....+++++.+. .|+....+
T Consensus       257 ~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  312 (420)
T 3vl1_A          257 TYGKYVIAGH--VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN  312 (420)
T ss_dssp             CTTEEEEEEE--TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCEEEEEc--CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC
Confidence            6443444433  2446777776544333322222 34567788877666 45444444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.82  E-value=1.4  Score=44.37  Aligned_cols=179  Identities=12%  Similarity=0.073  Sum_probs=103.5

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECC--CCEEEEEeccCCcceEEEEEcCCC--ccEEEEe
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPV--KGKMFWSNVTKQVVTIEMAFMDGT--KRETVVS   79 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~lyw~d~~~~~~~I~~~~~dgs--~~~~v~~   79 (652)
                      +++....+.|.+++++......+....+    .-..+..+++++.  ...|+...   ..+.|..+++...  .....+.
T Consensus        72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           72 LASCSYDGKVLIWKEENGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEEEE
T ss_pred             EEEeccCCEEEEEEcCCCceeEeeeecC----CCcceEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEEec
Confidence            3333456778888887664322222111    3357899999998  67777665   5678888887754  2233333


Q ss_pred             CCCcCCccCCCCcEEEEcc------------CCcEEEEeCCCCEEEEEEcCCCc-EEEE---EeCCCCCceeEEEcCCC-
Q psy5768          80 QKKYPAVTACNLHIAVDWI------------AQNIYWSDPKENVIEVARLTGQY-RYVL---ISGGVDQPSALAVDPES-  142 (652)
Q Consensus        80 ~~~~~~p~~~~~~lavDw~------------~~~lY~~d~~~~~I~v~~~dg~~-~~~l---~~~~~~~P~~iavd~~~-  142 (652)
                      .. ...+.    .+++...            .++++++-...+.|.+.++.... ...+   +.........+++.|.. 
T Consensus       145 ~~-~~~v~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          145 AH-AIGVN----SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             CC-TTCEE----EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             CC-CCceE----EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            33 34455    6666653            35566665567788888876432 2112   22223567799999973 


Q ss_pred             -CeEEEEecCCCCeEEEEeCCCCC---cEEEEee--cccCceeEEEeccCCEEEEEeCC
Q psy5768         143 -GYLFWSESGKIPLIARAGLDGKK---QTILAQE--IIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       143 -g~lywtd~~~~~~I~~~~ldg~~---~~~~~~~--~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                       |.++.+-. ....|...+++...   ...+...  .-.....+++++.+..|+....+
T Consensus       220 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          220 LRSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             SSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             CCCeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence             44444432 24456665555432   2222221  12356788888888777777666

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.81  E-value=0.17  Score=53.47  Aligned_cols=175  Identities=10%  Similarity=0.083  Sum_probs=104.7

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC-cCCc
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK-YPAV   86 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~-~~~p   86 (652)
                      ...+.|.++|++......+....+    .-..+.+|+|+|.++.++++-  ...+.|..+++.+.....+..... ....
T Consensus       139 s~dg~i~lWd~~~~~~~~~~~~~g----H~~~V~~l~f~p~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  212 (435)
T 4e54_B          139 SKGGDIMLWNFGIKDKPTFIKGIG----AGGSITGLKFNPLNTNQFYAS--SMEGTTRLQDFKGNILRVFASSDTINIWF  212 (435)
T ss_dssp             ETTSCEEEECSSCCSCCEEECCCS----SSCCCCEEEECSSCTTEEEEE--CSSSCEEEEETTSCEEEEEECCSSCSCCC
T ss_pred             eCCCEEEEEECCCCCceeEEEccC----CCCCEEEEEEeCCCCCEEEEE--eCCCEEEEeeccCCceeEEeccCCCCccE
Confidence            356788899887554434433222    235789999998766555565  567889999998776555544331 1123


Q ss_pred             cCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC-CC
Q psy5768          87 TACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KK  165 (652)
Q Consensus        87 ~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg-~~  165 (652)
                      .    .++++.. +++.++-...+.|.+.+++|+....+. .-......+++.|....++.+-.. ...|...++.. ..
T Consensus       213 ~----~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iwd~~~~~~  285 (435)
T 4e54_B          213 C----SLDVSAS-SRMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRG  285 (435)
T ss_dssp             C----CEEEETT-TTEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET-TSBCCEEETTTCCS
T ss_pred             E----EEEECCC-CCEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecC-cceeeEEecccccc
Confidence            4    7788764 455556566788999999886543322 223456789999977767665332 33444444432 11


Q ss_pred             cEEEEee-c-ccCceeEEEeccCCEEEEEeCC
Q psy5768         166 QTILAQE-I-IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       166 ~~~~~~~-~-~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ...+... . -...+.+++++.+.+|+-...|
T Consensus       286 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          286 KASFLYSLPHRHPVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             SSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred             cceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence            1111111 1 2345677787777777666666

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.80  E-value=2  Score=43.84  Aligned_cols=208  Identities=11%  Similarity=-0.033  Sum_probs=117.8

Q ss_pred             ceEEEEEEEcC----C---CeEEEeecccccEEEEeccCCcc-----eEEeec------cCceeeeEEE----ccCCE-E
Q psy5768         314 KNIIELSYDYK----R---KTLFYSDIQKGTINSVFFNGSNH-----RVLLER------QGSVEGLAYE----YVHNY-L  370 (652)
Q Consensus       314 ~~~~~v~~D~~----~---~~lywsd~~~~~I~~~~~~g~~~-----~~i~~~------~~~~~glAvD----w~~~~-L  370 (652)
                      ..+..++|.+.    .   ..|+.. ...+.|...++.....     ...+..      ...+..+++.    +.++. |
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATT-SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEE-ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEE-cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence            45778888877    4   444444 4457788777665442     222222      2678889998    77777 5


Q ss_pred             EEEeCCCCeEEEEEcCC------CCCcc---E-EEEE-----eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC
Q psy5768         371 YWTCNNDATINKIDLDS------PKAQR---I-VVVR-----LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG  435 (652)
Q Consensus       371 Ywtd~~~~~I~~~~~~~------~~~~~---~-~~~~-----~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG  435 (652)
                      +.+ ...+.|.+.++..      ...-.   . .+..     ......+.+++++|.. +|+.....   +.|...++..
T Consensus       142 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d---g~i~i~d~~~  216 (397)
T 1sq9_A          142 VAT-DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN---GTVQISELST  216 (397)
T ss_dssp             EEE-ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT---SEEEEEETTT
T ss_pred             EEE-eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC---CcEEEEECCC
Confidence            544 4567787777754      21111   1 2221     2235678899999965 44443322   3666666654


Q ss_pred             CCceEEEEc---C---CCCCceEEEecCCCEEEEEeCC--CCeEEEEecCCCceEEEecC-------------CCCceeE
Q psy5768         436 FGTESIITT---D---ITMPNALALDHQAEKLFWGDAR--LDKIERCDYDGTNRIVLSKI-------------SPLHPFD  494 (652)
Q Consensus       436 ~~~~~l~~~---~---l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~ldG~~~~~l~~~-------------~~~~p~g  494 (652)
                      ......+..   .   -..+..+++++.+..|+.+...  .+.|...++........+..             ......+
T Consensus       217 ~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (397)
T 1sq9_A          217 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  296 (397)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE
Confidence            332222222   1   3456789998887777765432  16788888865544433332             2244567


Q ss_pred             EEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         495 MAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       495 lav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      +++. .+.++.+-...+.|...+..+++....+.
T Consensus       297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            7775 23333444456777777777776555554

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=95.79  E-value=0.0045  Score=44.32  Aligned_cols=20  Identities=30%  Similarity=0.786  Sum_probs=18.3

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ..|++++|+|.||+||+.+|
T Consensus         5 ~~C~~~~F~C~nG~CIp~~~   24 (52)
T 2m0p_A            5 ASCLDTQYTCDNHQCISKNW   24 (52)
T ss_dssp             CSSCSSEEECTTCCEEETTS
T ss_pred             CCCCCCceECCCCCEEecCc
Confidence            57899999999999999876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.74  E-value=1.9  Score=43.16  Aligned_cols=103  Identities=8%  Similarity=0.034  Sum_probs=68.6

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEE
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVAR  116 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~  116 (652)
                      -..+.+|++++....|+...   ..+.|..+++........+... ...+.    ++++...++.| ++-...+.|.+.+
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~h-~~~v~----~~~~~~~~~~l-~s~~~dg~i~iwd  102 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCS---KDSSASVWYSLNGERLGTLDGH-TGTIW----SIDVDCFTKYC-VTGSADYSIKLWD  102 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEE---SSSCEEEEETTTCCEEEEECCC-SSCEE----EEEECTTSSEE-EEEETTTEEEEEE
T ss_pred             eceEEEEEEcCCCCEEEEEe---CCCEEEEEeCCCchhhhhhhhc-CCcEE----EEEEcCCCCEE-EEEeCCCeEEEEE
Confidence            35789999999877777665   5678888887654433334444 44566    78877644444 4444678899999


Q ss_pred             cCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEe
Q psy5768         117 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSE  149 (652)
Q Consensus       117 ~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd  149 (652)
                      ++.......+. .-..+..+++.|...+|+.+.
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  134 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL  134 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEec
Confidence            87654444444 346788899998665655543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.69  E-value=1.5  Score=44.16  Aligned_cols=175  Identities=9%  Similarity=0.000  Sum_probs=98.3

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECC--CCEEEEEeccCCcceEEEEEcCCCc--cEEEEeCCCc
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPV--KGKMFWSNVTKQVVTIEMAFMDGTK--RETVVSQKKY   83 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~lyw~d~~~~~~~I~~~~~dgs~--~~~v~~~~~~   83 (652)
                      ...+.|+++++++.....+....+    .-..+.+|++.+.  ...|+-..   ..+.|..+++....  ........ .
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~-~  101 (379)
T 3jrp_A           30 SSDKTIKIFEVEGETHKLIDTLTG----HEGPVWRVDWAHPKFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVH-S  101 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCC-S
T ss_pred             ECCCcEEEEecCCCcceeeeEecC----CCCcEEEEEeCCCCCCCEEEEec---cCCEEEEEEcCCCceeEeeeecCC-C
Confidence            346778888886443322222111    2357889999766  66676655   56788888877653  22222323 3


Q ss_pred             CCccCCCCcEEEEccC-CcEEEEeCCCCEEEEEEcCCC--cEEEEEeCCCCCceeEEEcCC------------CCeEEEE
Q psy5768          84 PAVTACNLHIAVDWIA-QNIYWSDPKENVIEVARLTGQ--YRYVLISGGVDQPSALAVDPE------------SGYLFWS  148 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~-~~lY~~d~~~~~I~v~~~dg~--~~~~l~~~~~~~P~~iavd~~------------~g~lywt  148 (652)
                      ..+.    .+++.... +++.++-...+.|.+.++...  .....+.........++..|.            ++.++.+
T Consensus       102 ~~v~----~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (379)
T 3jrp_A          102 ASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT  177 (379)
T ss_dssp             SCEE----EEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEE
T ss_pred             cceE----EEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE
Confidence            4566    77777652 445555556788999988754  233333444456788899885            3444444


Q ss_pred             ecCCCCeEEEEeCCCCCc-EEEEee---cccCceeEEEecc---CCEEEEEeCC
Q psy5768         149 ESGKIPLIARAGLDGKKQ-TILAQE---IIMPIKDITLDLK---FFSAFYRNLS  195 (652)
Q Consensus       149 d~~~~~~I~~~~ldg~~~-~~~~~~---~~~~p~gl~lD~~---~~~ly~~d~~  195 (652)
                      -. ....|...++..... ..+...   .-.....+++.+.   .+.|+....+
T Consensus       178 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          178 GG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             Ee-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            32 234566655543322 222211   1235677788776   4555555555

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=95.69  E-value=3.9  Score=46.36  Aligned_cols=164  Identities=7%  Similarity=0.079  Sum_probs=90.8

Q ss_pred             EEEEEEEcCCCeE-EEeecc--cccEEEEeccCCc-------ceEEe-eccC------ceeeeEEEccCCEEE-EEeC--
Q psy5768         316 IIELSYDYKRKTL-FYSDIQ--KGTINSVFFNGSN-------HRVLL-ERQG------SVEGLAYEYVHNYLY-WTCN--  375 (652)
Q Consensus       316 ~~~v~~D~~~~~l-ywsd~~--~~~I~~~~~~g~~-------~~~i~-~~~~------~~~glAvDw~~~~LY-wtd~--  375 (652)
                      +..+++.+..+.+ ++.+..  ...|+.+++++..       ...+. +.-.      .+...++.+.++.|+ |...  
T Consensus       262 ~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~  341 (740)
T 4a5s_A          262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE  341 (740)
T ss_dssp             EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred             EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC
Confidence            4566777665533 344432  2357777776543       22222 1111      145778888888887 7643  


Q ss_pred             CCCeEEEEEcCCCCCccEEEEEeCCCCCceEE-EEeCCCCEEEEEecC----CCCCceEEEeecCCCceEEEEcCC----
Q psy5768         376 NDATINKIDLDSPKAQRIVVVRLGQHDKPRGI-DIDSCDSRIYWTNWN----SHLPSIQRAFFSGFGTESIITTDI----  446 (652)
Q Consensus       376 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~I-avdp~~g~Lywtd~~----~~~~~I~r~~ldG~~~~~l~~~~l----  446 (652)
                      +...|..+++++..  .+. ++. .......+ ..|  .+.||++...    .....|+++.++|...+..++..+    
T Consensus       342 G~~~l~~~~~~~~~--~~~-lT~-g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~  415 (740)
T 4a5s_A          342 GYRHICYFQIDKKD--CTF-ITK-GTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPER  415 (740)
T ss_dssp             SCEEEEEEETTCSS--CEE-SCC-SSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTT
T ss_pred             CceEEEEEECCCCc--eEe-ccc-CCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCC
Confidence            33568888887643  222 221 12222333 355  7889998765    223489999999876543443222    


Q ss_pred             CCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEe
Q psy5768         447 TMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLS  485 (652)
Q Consensus       447 ~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~  485 (652)
                      ......++.+.++.+...-.  ....+..++.++.....++
T Consensus       416 ~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence            23346777777775544422  2345677777655444443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.67  E-value=0.51  Score=53.33  Aligned_cols=194  Identities=15%  Similarity=0.084  Sum_probs=116.2

Q ss_pred             CCCeEEEeecc----cccEEEEeccCCcceEEeeccC-------ceeeeEEEccCCEEEEEeCCC----CeEEEEEcCCC
Q psy5768         324 KRKTLFYSDIQ----KGTINSVFFNGSNHRVLLERQG-------SVEGLAYEYVHNYLYWTCNND----ATINKIDLDSP  388 (652)
Q Consensus       324 ~~~~lywsd~~----~~~I~~~~~~g~~~~~i~~~~~-------~~~glAvDw~~~~LYwtd~~~----~~I~~~~~~~~  388 (652)
                      ..+++|++-..    ...|++....+...++++....       ...++++.+.++.|.++....    ..|.+.++.+.
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg  157 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG  157 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence            45677776543    2457888877766666663211       467889999999887765433    47999998763


Q ss_pred             CCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC----------CCceEEEeecCCCce-EEEEcCC---CCCceEEE
Q psy5768         389 KAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH----------LPSIQRAFFSGFGTE-SIITTDI---TMPNALAL  454 (652)
Q Consensus       389 ~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~----------~~~I~r~~ldG~~~~-~l~~~~l---~~P~glai  454 (652)
                      .  ......... ....+++..|....||++.....          ..+|++..+++...+ .++...-   .+-.++++
T Consensus       158 ~--~~~~~~~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          158 E--WSKVDVIEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             C--BCSSCCBSC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             C--CcCCcccCc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            2  110001111 12268899998888888876431          235898888765532 3333221   23458889


Q ss_pred             ecCCCEEEEEeCC---CCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEE-EcCC--CCeEEEEEccCCc
Q psy5768         455 DHQAEKLFWGDAR---LDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFW-TDWV--IHAVLRANKYTGE  521 (652)
Q Consensus       455 D~~~~~LYw~D~~---~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYw-td~~--~~~I~~~~k~~g~  521 (652)
                      ++++++|++.-..   ...|+.++..+...+.+.......-..+.-.++ +|+ +++.  ...|++++..+++
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence            9999988876432   347777777555555554433122122223455 655 4443  5689888876664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.67  E-value=2  Score=42.88  Aligned_cols=119  Identities=8%  Similarity=-0.038  Sum_probs=68.0

Q ss_pred             CCeeEEEEECCCCEEEEEeccCC---cceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccC--CcEEEEeCCCCEE
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQ---VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIA--QNIYWSDPKENVI  112 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~---~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~--~~lY~~d~~~~~I  112 (652)
                      ..+.+|+++|.+.+++.+-  ..   .+.|+.++++......+...+....+.    .+++....  +++.++-...+.|
T Consensus        19 ~~v~~~~~~p~~~~l~~~~--s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMG--NFARGTGVIQLYEIQHGDLKLLREIEKAKPIK----CGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEE--C--CCCEEEEEEEECSSSEEEEEEEEESSCEE----EEECTTCCTTTCCEEEEETTSCE
T ss_pred             CceEEEEEcCCCceEEEec--CccCCCcEEEEEeCCCCcccceeeecccCcEE----EEEEcCCCCCCceEEEecCCCeE
Confidence            5789999999887777654  33   678888888865433332211033455    66666542  3555555567888


Q ss_pred             EEEEcCCCc-EEEEEeCCCCCceeE------EEcCCCCeEEEEecCCCCeEEEEeCCCC
Q psy5768         113 EVARLTGQY-RYVLISGGVDQPSAL------AVDPESGYLFWSESGKIPLIARAGLDGK  164 (652)
Q Consensus       113 ~v~~~dg~~-~~~l~~~~~~~P~~i------avd~~~g~lywtd~~~~~~I~~~~ldg~  164 (652)
                      .+.+++... ....+.........+      ++.|...+|+....  ...|...++...
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~--d~~i~vwd~~~~  149 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQK  149 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET--TSCEEEECTTSC
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC--CCeEEEEeCCCC
Confidence            888877543 222233223344555      34554445554432  345666666543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.64  E-value=2.3  Score=43.34  Aligned_cols=151  Identities=9%  Similarity=0.041  Sum_probs=89.8

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCC--cEEEEeCCCCEEE
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQ--NIYWSDPKENVIE  113 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~--~lY~~d~~~~~I~  113 (652)
                      .-..+.++++.+.++.++.+-  ...+.|..+++........+..  ...+.    .+++...+.  .+.++-...+.|.
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSS--SFDKTLKVWDTNTLQTADVFNF--EETVY----SHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEE--ETTSEEEEEETTTTEEEEEEEC--SSCEE----EEEECSSCSSCCEEEEEESSSSEE
T ss_pred             CCCcEEEEEEccCCCcEEEEE--eCCCeEEEeeCCCCccceeccC--CCcee----eeEeecCCCCCcEEEEEcCCCeEE
Confidence            345789999999555555554  4568899999886644444332  23344    666655433  3555555677888


Q ss_pred             EEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCC-cEEEE---------------eecccCc
Q psy5768         114 VARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILA---------------QEIIMPI  177 (652)
Q Consensus       114 v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~-~~~~~---------------~~~~~~p  177 (652)
                      +.++........+.........+++.|...+|+.+-. ..+.|...++.... ....+               ...-..+
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATAS-ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEE-TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEc-CCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            8888754433333333456789999997776665533 24566666654332 11111               0112346


Q ss_pred             eeEEEeccCCEEEEEeCC
Q psy5768         178 KDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       178 ~gl~lD~~~~~ly~~d~~  195 (652)
                      ..+++++.+..|+....+
T Consensus       249 ~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             EEEEECTTSSEEEEEETT
T ss_pred             eEEEEcCCCCEEEEecCC
Confidence            777887777677666666

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.53  E-value=2.3  Score=42.78  Aligned_cols=174  Identities=7%  Similarity=-0.042  Sum_probs=105.3

Q ss_pred             EecCCCCeEEEEecCCC-eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc
Q psy5768           5 VSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY   83 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~   83 (652)
                      ++....+.|.++|+... ...++..       .-..+.+++++|....++-.   ...+.|..+++........+... .
T Consensus       158 ~s~s~d~~i~~wd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~sg---~~d~~v~~wd~~~~~~~~~~~~h-~  226 (340)
T 1got_B          158 VTSSGDTTCALWDIETGQQTTTFTG-------HTGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREGMCRQTFTGH-E  226 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCSEEEEECCC-S
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcC-------CCCceEEEEECCCCCEEEEE---eCCCcEEEEECCCCeeEEEEcCC-c
Confidence            34445678888887644 3444433       23578999999876655544   36788988887654433334444 4


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeC-C-CCCceeEEEcCCCCeEEEEecCCCCeEEEEeC
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-G-VDQPSALAVDPESGYLFWSESGKIPLIARAGL  161 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~-~-~~~P~~iavd~~~g~lywtd~~~~~~I~~~~l  161 (652)
                      ..+.    ++++.+. ++++.+-+..+.|.+.++........... . ......+++.|...+|.-..  ....|..-++
T Consensus       227 ~~v~----~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~d~~i~vwd~  299 (340)
T 1got_B          227 SDIN----AICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY--DDFNCNVWDA  299 (340)
T ss_dssp             SCEE----EEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEET
T ss_pred             CCEE----EEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC--CCCeEEEEEc
Confidence            5567    8888874 45556666678899999875543332221 1 22467889998555554443  2456777776


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ........+..--.....+++.+.+..|.-...||
T Consensus       300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            54433332322234567788877766666666663

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.53  E-value=0.46  Score=50.06  Aligned_cols=204  Identities=9%  Similarity=0.031  Sum_probs=118.8

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee---ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE---RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~---~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                      ..+.+|+|++..+.+..+-...+.|...+++......++.   ....+.+|++.+..++++.+-+..++|.+-++.+.  
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~--  197 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--  197 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC--
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC--
Confidence            4578999999877777666667888888877554444442   23468889998766666667777788988887652  


Q ss_pred             ccEEEEEeC--CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         391 QRIVVVRLG--QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       391 ~~~~~~~~~--~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                       ....+...  ......+++++|...+|......   +.|...+++|.....+.. .-....+|++.+.++.++.+-...
T Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d---g~i~~wd~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          198 -ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV---GNVILLNMDGKELWNLRM-HKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             -EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS---SBEEEEESSSCBCCCSBC-CSSCEEEEEECTTCSSEEEEEETT
T ss_pred             -ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC---CcEeeeccCcceeEEEec-ccceEEeeeecCCCceEEEEecCc
Confidence             22222211  12345679999976666554332   377777777754333221 123457888888877666655555


Q ss_pred             CeEEEEecCCCc-eEEEecC--CCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEE
Q psy5768         469 DKIERCDYDGTN-RIVLSKI--SPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYT  525 (652)
Q Consensus       469 ~~I~~~~ldG~~-~~~l~~~--~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~  525 (652)
                      +.|...|+.... ...+...  ......+|++.  +.+|+ +-...+.|..-+..++.....
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE-EEESSSCEEEEESSSSSSEEE
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECCCCCeeE-EEcCCCEEEEEECCCCccceE
Confidence            666666765322 1111111  11123445543  33444 333455565556555554433

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=95.51  E-value=0.0034  Score=56.32  Aligned_cols=42  Identities=31%  Similarity=0.748  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCCcccc-eecCCCceEEEeCCc-cccCCCccccc
Q psy5768         236 GTNPCGVNNGGCAELC-LYNGVSAVCACAHGV-VAQDGKSCSEY  277 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC-~~~~~~~~C~C~~G~-l~~dg~~C~~~  277 (652)
                      ..++|...+++|.|.| +..+++|+|.|+.|| +..||++|...
T Consensus        84 ~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             EECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred             CCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence            3489998888999999 877779999999998 56789999753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.49  E-value=2.2  Score=42.13  Aligned_cols=149  Identities=10%  Similarity=0.006  Sum_probs=95.4

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEE
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVAR  116 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~  116 (652)
                      ...+.++++++.+++|+-..   ..+.|..++.........+... ...+.    .+++...++ +..+-+..+.|.+.+
T Consensus        23 ~~~v~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~h-~~~v~----~~~~~~~~~-~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLASSS---ADKLIKIWGAYDGKFEKTISGH-KLGIS----DVAWSSDSN-LLVSASDDKTLKIWD   93 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEECCC-SSCEE----EEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEee---CCCeEEEEeCCCcccchhhccC-CCceE----EEEEcCCCC-EEEEECCCCEEEEEE
Confidence            35789999999888777655   5678888887654444444444 45566    788876444 444444678899999


Q ss_pred             cCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         117 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       117 ~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ++.......+.........+++.|...+|+-...  ...|..-++........+...-.....+++++.+..|+....+|
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            8755444444444456778899996666665543  45677777654333322222234567788887777776666663

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.49  E-value=2.7  Score=43.26  Aligned_cols=326  Identities=10%  Similarity=0.056  Sum_probs=164.7

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ....+++|++...+|+...   ..+.|+.+++........+.   .+...    .++.-...++++.+-...+.|.+.++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~---~d~~v~i~d~~~~~~~~~~~---~~~~~----~~~~~~~~~~~l~~~~~dg~i~iwd~  126 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKAR---LDGHDFLFNTIIRDGSKMLK---RADYT----AVDTAKLQMRRFILGTTEGDIKVLDS  126 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEE---ETTEEEEEECCSEETTTTSC---SCCEE----EEEEECSSSCEEEEEETTSCEEEECT
T ss_pred             ccccceeeeecCCeEEEEE---cCCcEEEEEecccceeeEEe---cCCce----EEEEEecCCCEEEEEECCCCEEEEeC
Confidence            3455789999988888766   45788888776432111111   11122    33232234555555556778888888


Q ss_pred             CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCC-CCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         118 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       118 dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg-~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ........+..-......++..|...+|+-...  ...|..-++.. +....+ ...-.....+++.+.++.|+....+|
T Consensus       127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~  203 (420)
T 3vl1_A          127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQ--DMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDG  203 (420)
T ss_dssp             TSCEEEEETTSSSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CCcceeeecccccCccEEEEECCCCCEEEEEeC--CCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            766555554444567889999996555655442  45777777764 333333 32235678899998888888777774


Q ss_pred             CcEEEEEecCCCCceEEEeecC--CCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcc
Q psy5768         197 GNIHIISLSNLSDVSTISMKPY--GDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSC  274 (652)
Q Consensus       197 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C  274 (652)
                       ..+..-.........  +...  .......+.++...... ..                           .......++
T Consensus       204 -~v~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~---------------------------~~~~~~v~~  252 (420)
T 3vl1_A          204 -TIRLWECGTGTTIHT--FNRKENPHDGVNSIALFVGTDRQ-LH---------------------------EISTSKKNN  252 (420)
T ss_dssp             -CEEEEETTTTEEEEE--ECBTTBTTCCEEEEEEEECCCSS-CG---------------------------GGCCCCCCT
T ss_pred             -cEEEeECCCCceeEE--eecCCCCCCCccEEEEecCCcce-ee---------------------------ecccCcccc
Confidence             333221111111111  1100  00011111111100000 00                           000001111


Q ss_pred             c--cc-ceEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc--
Q psy5768         275 S--EY-DAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH--  348 (652)
Q Consensus       275 ~--~~-~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~--  348 (652)
                      .  .+ ..+|+.+. ...|+..++..+.    ....+.. .+...+.+++|++..+.++++-...+.|...++.....  
T Consensus       253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          253 LEFGTYGKYVIAGHVSGVITVHNVFSKE----QTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             TCSSCTTEEEEEEETTSCEEEEETTTCC----EEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             eEEcCCCCEEEEEcCCCeEEEEECCCCc----eeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            1  12 23444443 3345555652221    1112211 22345788999988774555555668888888765332  


Q ss_pred             eEEee-ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc------EEEEEeCCCCCceEEEEeCCCC
Q psy5768         349 RVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR------IVVVRLGQHDKPRGIDIDSCDS  414 (652)
Q Consensus       349 ~~i~~-~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~------~~~~~~~~~~~P~~Iavdp~~g  414 (652)
                      ..+.. .-..+..++..  .+.++.+-+..++|.+-++.......      .............+++..|...
T Consensus       328 ~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          328 GEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             hhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            33332 23345555543  56677777777888877765422110      0111123345566677777544

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.43  E-value=0.018  Score=63.75  Aligned_cols=59  Identities=15%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCcc-----ccccCCCCceeee-ccCceeecc-----------C-CcccCcccccCCCceeecc-CeecCC
Q psy5768         548 KTPCRHLNGNCDD-----ICKLDETGQVVCS-CFTGKVLME-----------D-NRSCTINTVCSEHDFKCSD-GMCIPF  608 (652)
Q Consensus       548 ~~~C~~~ng~Cs~-----lCl~~~~~~~~C~-Cp~g~~l~~-----------d-~~C~~~~~~C~~~~f~C~~-g~Ci~~  608 (652)
                      .++|..+++.|.+     .|+..+. +|+|. |+.||....           + ++|.. ...|......|.+ +.|+..
T Consensus        44 iDEC~~~p~~C~~gg~~~~CvNt~g-sY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~d-ideC~~~~~pC~~~~~Cvnt  121 (634)
T 1yo8_A           44 LDECALVPDICFSTSKVPRCVNTQP-GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP-ENPCKDKTHNCHKHAECIYL  121 (634)
T ss_dssp             CCTTTTSCCCSCCCSSSCCEEECSS-SEEECCCCTTEEECCCEESSSHHHHSCCCCEEE-CCTTTTTCCCCCTTEEEEEC
T ss_pred             cccccCCCCcccCCccccceeeccC-ceecccCCCCcccCccccccccccccCCCcccc-cccccCCCcccccCcccccc
Confidence            4778766667865     7998776 69998 999998653           3 45764 4556655556664 366643

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.40  E-value=0.0058  Score=55.54  Aligned_cols=41  Identities=22%  Similarity=0.429  Sum_probs=33.5

Q ss_pred             CCCCCCCC-CCCCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         236 GTNPCGVN-NGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       236 ~~n~C~~~-ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      +.++|... ++.|+|.|...+.+|+|.|+.|| |..|+++|..
T Consensus       116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             ECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             cCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            35789864 46899999988878999999999 6679999963

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=95.39  E-value=0.0086  Score=53.34  Aligned_cols=38  Identities=26%  Similarity=0.634  Sum_probs=31.9

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |...|++|+|.|+..++++|+|.|+.||.|..| ++|..
T Consensus        91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L           91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEE
T ss_pred             ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCC
Confidence            455578999999987764699999999999888 88875

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=95.36  E-value=0.0039  Score=58.58  Aligned_cols=40  Identities=38%  Similarity=0.901  Sum_probs=35.2

Q ss_pred             CCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccccc
Q psy5768         238 NPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEY  277 (652)
Q Consensus       238 n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~  277 (652)
                      ++|...+++|.+.|+..+++|+|.|+.|| |..||++|...
T Consensus        82 deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~  122 (195)
T 1nfu_B           82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT  122 (195)
T ss_dssp             CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             ccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccC
Confidence            78998888999999988889999999998 66799999843

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.33  E-value=0.0077  Score=55.44  Aligned_cols=39  Identities=28%  Similarity=0.598  Sum_probs=32.4

Q ss_pred             CCCCCCCCC---CccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGN---CDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~---Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|...+++   |+|.|...++ +++|.|+.||+|..| ++|.+
T Consensus       125 ~eC~~~~~~~~~C~~~C~n~~g-~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          125 DECQVAPGEAPTCDHHCHNHLG-GFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CTTCCCTTSCCSSSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             CcccCCCCCCCccCCccccCCC-CEEEeCCCCcEECCCCCcccc
Confidence            567766655   9999998776 599999999999988 88864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.27  E-value=2.7  Score=42.00  Aligned_cols=114  Identities=13%  Similarity=0.166  Sum_probs=72.2

Q ss_pred             ceEEEEEEEcCC---CeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy5768         314 KNIIELSYDYKR---KTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       314 ~~~~~v~~D~~~---~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      ..+.+++|.+..   +.++++-...+.|...++........+ .....+..|++.+..++++.+-...+.|.+.++... 
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  148 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-  148 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-
Confidence            456788887763   345555556688888887644333223 345578889998844455556666788998888642 


Q ss_pred             CccEEEEEe----CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         390 AQRIVVVRL----GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       390 ~~~~~~~~~----~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                         +.+...    .....+.+|+++|...+|+.+...   +.|...++.
T Consensus       149 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~  191 (366)
T 3k26_A          149 ---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD---HSLKLWRIN  191 (366)
T ss_dssp             ---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT---SCEEEEESC
T ss_pred             ---eEEEEecccccccCceeEEEECCCCCEEEEecCC---CCEEEEECC
Confidence               333332    345678999999977676665543   255555544

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=95.27  E-value=0.0044  Score=54.67  Aligned_cols=39  Identities=38%  Similarity=0.940  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         238 NPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       238 n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      ++|..++++|.+.|+..+++|+|.|+.|| +..||++|..
T Consensus        82 d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCc
Confidence            78988788999999988889999999998 5678999974

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=95.26  E-value=0.0063  Score=54.25  Aligned_cols=37  Identities=35%  Similarity=0.821  Sum_probs=31.6

Q ss_pred             CCCCCCCCcccceecCC-CceEEEeCCc-cccCCCcccc
Q psy5768         240 CGVNNGGCAELCLYNGV-SAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~-~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      |...|++|+|.|+...+ +|+|.|+.|| +..||++|..
T Consensus        91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L           91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEE
T ss_pred             ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCC
Confidence            45568899999998887 8999999998 5678999974

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.20  E-value=0.0064  Score=49.02  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCcc-ccccCCCCceeeeccCceeecc-C-CcccCcccccCCCceeeccCeecCC
Q psy5768         549 TPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLME-D-NRSCTINTVCSEHDFKCSDGMCIPF  608 (652)
Q Consensus       549 ~~C~~~ng~Cs~-lCl~~~~~~~~C~Cp~g~~l~~-d-~~C~~~~~~C~~~~f~C~~g~Ci~~  608 (652)
                      ++|..+.+.|.+ .|+..++ +|+|.|+.||.+.. + +.|.. ...|......|.++.|+..
T Consensus         4 deC~~~~~~C~~g~C~n~~g-~y~C~C~~Gy~~~~~~g~~C~d-ideC~~~~~~C~~~~C~n~   64 (86)
T 1lmj_A            4 DECRISPDLCGRGQCVNTPG-DFECKCDEGYESGFMMMKNCMD-IDECQRDPLLCRGGVCHNT   64 (86)
T ss_dssp             CTTTTCSSTTTTSCEEEETT-EEEECCCSSEEECTTTSSSEEE-CCHHHHCSSTTTTSEEEEE
T ss_pred             ccccCCCCCCCCCEEECCCC-CEEeeCCCCcCccCCCCCccCC-cccccCCCCcCCCCEeEcC
Confidence            556554445654 7887776 69999999999753 3 67764 3445443344555667643

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.19  E-value=0.0034  Score=50.71  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCc-ccceecCCCceEEEeCCc-cccCCCccc
Q psy5768         235 TGTNPCGVNNGGCA-ELCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs-~lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      .++++|...+..|. +.|+..+++|+|.|+.|| +..++++|.
T Consensus        44 ~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci   86 (86)
T 1lmj_A           44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI   86 (86)
T ss_dssp             EECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred             CCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence            35788887666786 589988889999999998 557888884

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.13  E-value=2.8  Score=47.18  Aligned_cols=196  Identities=14%  Similarity=0.177  Sum_probs=109.5

Q ss_pred             EEEEcCCCeEEEeecc------------cccEEEEeccCCcc--eEEeeccC----ceeeeEEEccCCEEEEEeCC---C
Q psy5768         319 LSYDYKRKTLFYSDIQ------------KGTINSVFFNGSNH--RVLLERQG----SVEGLAYEYVHNYLYWTCNN---D  377 (652)
Q Consensus       319 v~~D~~~~~lywsd~~------------~~~I~~~~~~g~~~--~~i~~~~~----~~~glAvDw~~~~LYwtd~~---~  377 (652)
                      +++. ..+.||++...            ...|++.++.....  +.+.+...    ...++++.+.++.|+++...   .
T Consensus       180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSG  258 (693)
T ss_dssp             CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSC
T ss_pred             EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCC
Confidence            4455 45667776543            24588877764332  34443322    24578888999999876542   2


Q ss_pred             CeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEe-cCCCCCceEEEeecCCCc---eEEEEcCCCCCceEE
Q psy5768         378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTN-WNSHLPSIQRAFFSGFGT---ESIITTDITMPNALA  453 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd-~~~~~~~I~r~~ldG~~~---~~l~~~~l~~P~gla  453 (652)
                      ..|+.+++++..+..+.+.  .....-... +++..+.||+.. .+....+|.++.+++...   +.++...-..   +.
T Consensus       259 ~~i~~~d~~~~~~~~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~  332 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV---LT  332 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---EE
T ss_pred             cEEEEEECCCCCCceEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE---EE
Confidence            5889998876432233332  122222222 566667777654 333346899999988665   5555433222   25


Q ss_pred             EecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCceeEEEE--eCCEEEEE--c-CCCCeEEEEEccCCc
Q psy5768         454 LDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLHPFDMAV--YGEFIFWT--D-WVIHAVLRANKYTGE  521 (652)
Q Consensus       454 iD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~p~glav--~~~~lYwt--d-~~~~~I~~~~k~~g~  521 (652)
                      ++..+++|++...  ...+|..++++|...+.+.........+++.  .++.|+++  + ..-..|+..+..+|+
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            5555888888744  3447999999987666553222112222222  23444443  2 122567777765554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.12  E-value=3.3  Score=42.03  Aligned_cols=174  Identities=9%  Similarity=0.017  Sum_probs=103.4

Q ss_pred             EecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCC-CEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           5 VSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVK-GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         5 v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      ++....+.|.++|++ ++...++...       -..+..+++.+.. +.++++-  ...+.|+.+++........+... 
T Consensus       170 ~t~s~D~~v~lwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~g~~l~sg--s~Dg~v~~wd~~~~~~~~~~~~h-  239 (354)
T 2pbi_B          170 LTASGDGTCALWDVESGQLLQSFHGH-------GADVLCLDLAPSETGNTFVSG--GCDKKAMVWDMRSGQCVQAFETH-  239 (354)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECC-------SSCEEEEEECCCSSCCEEEEE--ETTSCEEEEETTTCCEEEEECCC-
T ss_pred             EEEeCCCcEEEEeCCCCeEEEEEcCC-------CCCeEEEEEEeCCCCCEEEEE--eCCCeEEEEECCCCcEEEEecCC-
Confidence            334456788888876 4455555432       2467888888753 3444444  46788999998654333333433 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~--~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                      -..+.    ++++.+. ++++.+-+..+.|.+.++.......+....  ......+++.|...+|+-..  ....|..-+
T Consensus       240 ~~~v~----~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~--~d~~i~vwd  312 (354)
T 2pbi_B          240 ESDVN----SVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY--NDYTINVWD  312 (354)
T ss_dssp             SSCEE----EEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSCEEEEE
T ss_pred             CCCeE----EEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE--CCCcEEEEE
Confidence            44566    8888764 445555556788888888765443333321  22456888888555555443  244666666


Q ss_pred             CCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         161 LDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       161 ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      +........+..--.....+++.+.+..|.-.+.|
T Consensus       313 ~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            53322222222223567888888877777666666

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.11  E-value=2.9  Score=41.30  Aligned_cols=147  Identities=10%  Similarity=-0.032  Sum_probs=87.4

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+.+|+|+|.+..|.-..   ..+.|..+++........+... -..+.    .+++....+ +..+-+..+.|.+.++
T Consensus        14 ~~V~~~~fsp~~~~l~s~~---~dg~v~lWd~~~~~~~~~~~~~-~~~v~----~~~~~~~~~-~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL---YSGRVELWNYETQVEVRSIQVT-ETPVR----AGKFIARKN-WIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE---TTSEEEEEETTTTEEEEEEECC-SSCEE----EEEEEGGGT-EEEEEETTSEEEEEET
T ss_pred             CceEEEEECCCCCEEEEEc---CCCcEEEEECCCCceeEEeecc-CCcEE----EEEEeCCCC-EEEEECCCCEEEEEEC
Confidence            4789999999988887665   5688888888754322223333 33455    777776444 4455556788999998


Q ss_pred             CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCc-EEEEeecccCceeEEEeccC-CEEEEEeCC
Q psy5768         118 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ-TILAQEIIMPIKDITLDLKF-FSAFYRNLS  195 (652)
Q Consensus       118 dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~-~~~~~~~~~~p~gl~lD~~~-~~ly~~d~~  195 (652)
                      ........+..-......+++.|...+|+-...  ...|..-++..... .......-.....+++++.+ ..|.-...|
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC--CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            754444444444456789999996655554432  44566656543322 22222223345677777643 334334444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=95.09  E-value=5.6  Score=44.57  Aligned_cols=141  Identities=9%  Similarity=-0.050  Sum_probs=89.7

Q ss_pred             eeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCc--CCccCCCCcEEEEccCCcEEEEeC--------CC
Q psy5768          40 ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKY--PAVTACNLHIAVDWIAQNIYWSDP--------KE  109 (652)
Q Consensus        40 ~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~--~~p~~~~~~lavDw~~~~lY~~d~--------~~  109 (652)
                      ..++++.+.+ ++..+.   ..+.|+.++.++...+.++.....  ..+.    .+++.+.++.|+++..        ..
T Consensus        18 ~~~~~~s~dg-~~~~~~---~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~SpDg~~la~~~~~~~~~~~s~~   89 (719)
T 1z68_A           18 TFFPNWISGQ-EYLHQS---ADNNIVLYNIETGQSYTILSNRTMKSVNAS----NYGLSPDRQFVYLESDYSKLWRYSYT   89 (719)
T ss_dssp             CCCCEESSSS-EEEEEC---TTSCEEEEESSSCCEEEEECHHHHHTTTCS----EEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             CCccEECCCC-eEEEEc---CCCCEEEEEcCCCcEEEEEcccccccccee----eEEECCCCCeEEEEecCceeEEeecc
Confidence            3467788765 555455   467899999988765665543201  1255    8888877787877643        13


Q ss_pred             CEEEEEEcCCCcE---EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec-------------
Q psy5768         110 NVIEVARLTGQYR---YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-------------  173 (652)
Q Consensus       110 ~~I~v~~~dg~~~---~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~-------------  173 (652)
                      +.|.+.++++...   +.+    ......++..|...+|.++.   ...|...++++.....+....             
T Consensus        90 ~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v  162 (719)
T 1z68_A           90 ATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWV  162 (719)
T ss_dssp             EEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHH
T ss_pred             eEEEEEECCCCccccceec----CcccccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccce
Confidence            6788889887644   222    13467789999777777774   347888887665544433221             


Q ss_pred             -----ccCceeEEEeccCCEEEEEeCC
Q psy5768         174 -----IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       174 -----~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                           +....+++..+.+++|++...+
T Consensus       163 ~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          163 YEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             HHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             eeeecccCcccEEECCCCCEEEEEEEC
Confidence                 0122478888888888776554

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.05  E-value=0.0076  Score=48.70  Aligned_cols=42  Identities=21%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCC-cccceecCCCceEEEeCCc-cccCCCccccc
Q psy5768         236 GTNPCGVNNGGC-AELCLYNGVSAVCACAHGV-VAQDGKSCSEY  277 (652)
Q Consensus       236 ~~n~C~~~ng~C-s~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~  277 (652)
                      ++++|..+++.| .+.|+..+.+|+|.|+.|| +..+++.|...
T Consensus         2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~di   45 (87)
T 1z6c_A            2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDI   45 (87)
T ss_dssp             CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECC
T ss_pred             ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCc
Confidence            468998876668 5689988889999999998 45678888643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=95.04  E-value=3.1  Score=41.40  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=106.5

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCC-----EEEEEeccCCcceEEEEEcCCCccEEEE
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKG-----KMFWSNVTKQVVTIEMAFMDGTKRETVV   78 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~-----~lyw~d~~~~~~~I~~~~~dgs~~~~v~   78 (652)
                      +++....+.|.++++.+....++...       ...+..+.+.|...     .++.+-  ...+.|..+++........+
T Consensus       122 l~s~s~D~~i~vwd~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~  192 (319)
T 3frx_A          122 IISGSRDKTIKVWTIKGQCLATLLGH-------NDWVSQVRVVPNEKADDDSVTIISA--GNDKMVKAWNLNQFQIEADF  192 (319)
T ss_dssp             EEEEETTSCEEEEETTSCEEEEECCC-------SSCEEEEEECCC------CCEEEEE--ETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEecc-------CCcEEEEEEccCCCCCCCccEEEEE--eCCCEEEEEECCcchhheee
Confidence            44445667899999998877766542       24677888877532     244444  46778888888765433333


Q ss_pred             eCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5768          79 SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR  158 (652)
Q Consensus        79 ~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~  158 (652)
                      ... ...+.    .+++.+. +++..+-+..+.|.+-++........+.. ......+++.|...+|..+.   ...|..
T Consensus       193 ~~h-~~~v~----~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~---~~~i~v  262 (319)
T 3frx_A          193 IGH-NSNIN----TLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT---ATGIKV  262 (319)
T ss_dssp             CCC-CSCEE----EEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE---TTEEEE
T ss_pred             cCC-CCcEE----EEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc---CCCcEE
Confidence            444 45566    8888764 44555555678899999876654444443 35678999999655554443   235666


Q ss_pred             EeCCCCCcEEEEeec--------ccCceeEEEeccCCEEEEEeCCC
Q psy5768         159 AGLDGKKQTILAQEI--------IMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       159 ~~ldg~~~~~~~~~~--------~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ..++.......+...        -.....+++.+.++.|+-...||
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            666543322222111        12346788888877777666663

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.03  E-value=3.2  Score=41.42  Aligned_cols=145  Identities=7%  Similarity=-0.060  Sum_probs=90.6

Q ss_pred             ecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCC----CEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           6 SSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVK----GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         6 ~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~----~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      +....+.|.+++.. ++....+.....  ...-..+.++++.+..    ..|+...   ..+.|..+++........+..
T Consensus        39 ~~~~~~~v~vw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~  113 (366)
T 3k26_A           39 ATVGSNRVTLYECHSQGEIRLLQSYVD--ADADENFYTCAWTYDSNTSHPLLAVAG---SRGIIRIINPITMQCIKHYVG  113 (366)
T ss_dssp             EEEETTEEEEEEECGGGCEEEEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEEEE---TTCEEEEECTTTCCEEEEEES
T ss_pred             EECCCCEEEEEEcCCCcEEEeeeeccc--cCCCCcEEEEEeccCCCCCCCEEEEec---CCCEEEEEEchhceEeeeecC
Confidence            33345589999888 555555543211  1133578999999873    3455444   668899898775433333444


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEE---eCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI---SGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~---~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      . ...+.    .+++....+++..+-...+.|.+.++........+   .........++++|...+|+....  ...|.
T Consensus       114 ~-~~~i~----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~  186 (366)
T 3k26_A          114 H-GNAIN----ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DHSLK  186 (366)
T ss_dssp             C-CSCEE----EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET--TSCEE
T ss_pred             C-CCcEE----EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC--CCCEE
Confidence            4 45567    78877645666666666788999998765444444   233457889999996656655543  34566


Q ss_pred             EEeCC
Q psy5768         158 RAGLD  162 (652)
Q Consensus       158 ~~~ld  162 (652)
                      ..++.
T Consensus       187 i~d~~  191 (366)
T 3k26_A          187 LWRIN  191 (366)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            66654

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=95.02  E-value=0.0068  Score=42.15  Aligned_cols=20  Identities=40%  Similarity=1.046  Sum_probs=18.0

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +.|++++|+|.||+||+.+|
T Consensus         4 ~~C~~~~F~C~~g~CI~~~~   23 (45)
T 1d2l_A            4 PQCQPGEFACANSRCIQERW   23 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGG
T ss_pred             CcCCCCceEcCCCCeEehhh
Confidence            57899999999999999876

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=95.01  E-value=0.0016  Score=61.40  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCeeec--CCCCcccCCC
Q psy5768         613 DRVYNCHDKSDEGILYCAMRDCRPGYFKC--DNNKCILSSH  651 (652)
Q Consensus       613 d~~~dC~d~sde~~~~C~~~~C~~~~f~C--~~~~Ci~~~~  651 (652)
                      -...+|.|+|||..  |  ..|++++|+|  .||+|||.+|
T Consensus        38 ~~~~~c~d~sDE~~--C--~~C~~~~F~C~~~~g~CIp~~~   74 (215)
T 2gtl_O           38 RKAGSLRHRVEELE--D--PSCDEHEHQCGGDDPQCISKLF   74 (215)
T ss_dssp             HHHHHHHHHHHHHS--C--CSSCTTEEECCSSSCCEEEGGG
T ss_pred             cccccCCcchhhcc--C--CCCCCcceeeCCCCCcCccccc
Confidence            34458999999987  8  5799999999  7999999887

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.95  E-value=4.1  Score=42.29  Aligned_cols=175  Identities=7%  Similarity=0.005  Sum_probs=104.4

Q ss_pred             EEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           4 AVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      +++....+.|.++|+. |....++...       -..+..+++++.+..|.-..   ..+.|..+++........+... 
T Consensus       207 l~s~s~D~~i~~wd~~~~~~~~~~~~h-------~~~v~~~~~~~~g~~l~s~s---~D~~v~vwd~~~~~~~~~~~~h-  275 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGYCVKTFTGH-------REWVRMVRPNQDGTLIASCS---NDQTVRVWVVATKECKAELREH-  275 (410)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC-------SSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEECCC-
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEeCC-------CccEEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeEecCC-
Confidence            3444456778888876 4444455432       24678899988766655444   5678888887654433333333 


Q ss_pred             cCCccCCCCcEEEEccC-------------------CcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCC
Q psy5768          83 YPAVTACNLHIAVDWIA-------------------QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG  143 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~-------------------~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g  143 (652)
                      -..+.    .+++....                   +.+.++-+..+.|.+.++........+.+-....++++++|...
T Consensus       276 ~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~  351 (410)
T 1vyh_C          276 RHVVE----CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  351 (410)
T ss_dssp             SSCEE----EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CceEE----EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCC
Confidence            34455    55554421                   45666666778899998875544433444345678999999655


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      +|+-..  ....|..-++........+..--....++++.+....|.-...|
T Consensus       352 ~l~s~s--~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          352 FILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             CEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             EEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            665443  34567777765433322222223456788887776666555555

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=94.93  E-value=0.015  Score=52.12  Aligned_cols=39  Identities=33%  Similarity=0.719  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCcccc-ccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDIC-KLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lC-l~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|...++.|.+.| +..++ +|+|.|+.||.+..| ++|..
T Consensus        86 deC~~~~~~C~~~C~~n~~g-~y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L           86 ATCNIKNGRCKQFCKTGADS-KVLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             CCTTSGGGSCSSBCCCCSSS-CCCCBCCTTEEECTTSSSEEE
T ss_pred             ccccCCCCCCcCCCCCCCCC-CEEeEcCCCcEeCCCCCcCCC
Confidence            44554445555566 43332 466666666665555 55543

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=94.87  E-value=0.0094  Score=39.54  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=17.0

Q ss_pred             CCCCCeeecCCCCcccCCC
Q psy5768         633 DCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +|++++|+|.||+||+.+|
T Consensus         1 ~C~~~~f~C~~g~Ci~~~~   19 (37)
T 1ajj_A            1 PCSAFEFHCLSGECIHSSW   19 (37)
T ss_dssp             CCCTTCEECTTSCEECGGG
T ss_pred             CCCCCceEcCCCCeechhh
Confidence            4889999999999999875

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=94.87  E-value=0.011  Score=40.92  Aligned_cols=20  Identities=30%  Similarity=0.838  Sum_probs=18.0

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ..|++++|+|.||+|||.+|
T Consensus         3 ~~C~~~~F~C~~g~CI~~~~   22 (44)
T 1j8e_A            3 HSCSSTQFKCNSGRCIPEHW   22 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGG
T ss_pred             CCCCCCceEeCCCCeEecCc
Confidence            57899999999999999876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.81  E-value=3.8  Score=41.26  Aligned_cols=176  Identities=9%  Similarity=-0.023  Sum_probs=98.0

Q ss_pred             EecCCCCeEEEEecCCCeeE-EEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEE--EEeCC
Q psy5768           5 VSSPTQSKIVVCNLEGEYQT-TILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET--VVSQK   81 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~--v~~~~   81 (652)
                      ++....+.|+++++++.... ......+    .-..+.+|+++|.+++|.-..   ..+.|..++.+....+.  .+...
T Consensus        32 as~~~D~~i~iw~~~~~~~~~~~~~~~~----h~~~v~~~~~sp~g~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~h  104 (345)
T 3fm0_A           32 ASCGGDRRIRIWGTEGDSWICKSVLSEG----HQRTVRKVAWSPCGNYLASAS---FDATTCIWKKNQDDFECVTTLEGH  104 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECSS----CSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECCC-EEEEEEECCC
T ss_pred             EEEcCCCeEEEEEcCCCcceeeeeeccc----cCCcEEEEEECCCCCEEEEEE---CCCcEEEEEccCCCeEEEEEccCC
Confidence            33345577888887765432 2211111    335789999999888777655   45677777766543222  23333


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc---EEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY---RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR  158 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~---~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~  158 (652)
                       ...+.    .+++.+. +++..+-+..+.|.+.+++...   ....+.........++..|...+|.-...  ...|..
T Consensus       105 -~~~v~----~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~  176 (345)
T 3fm0_A          105 -ENEVK----SVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKL  176 (345)
T ss_dssp             -SSCEE----EEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEE
T ss_pred             -CCCce----EEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEE
Confidence             44566    7888764 4455555567788888876432   12223333345678899986555555443  234444


Q ss_pred             EeCCCCCcEEE--EeecccCceeEEEeccCCEEEEEeCC
Q psy5768         159 AGLDGKKQTIL--AQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       159 ~~ldg~~~~~~--~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      .++........  +..--.....|++++.+++|.-...|
T Consensus       177 w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            44332221111  11113456778888777666655555

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.72  E-value=0.018  Score=46.40  Aligned_cols=54  Identities=22%  Similarity=0.460  Sum_probs=34.9

Q ss_pred             CCCCCCCCCC-ccccccCCCCceeeeccCceeeccC-CcccCcccccCCCceeeccCeecC
Q psy5768         549 TPCRHLNGNC-DDICKLDETGQVVCSCFTGKVLMED-NRSCTINTVCSEHDFKCSDGMCIP  607 (652)
Q Consensus       549 ~~C~~~ng~C-s~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~~~~~C~~~~f~C~~g~Ci~  607 (652)
                      ++|..+.+.| .+.|+..++ +|+|.|+.||.+..+ ++|.. ...|.+  -.|. +.|+.
T Consensus         4 deC~~~~~~C~~~~C~n~~g-~y~C~C~~G~~~~~~g~~C~d-ideC~~--~~C~-~~C~n   59 (87)
T 1z6c_A            4 DECSLKPSICGTAVCKNIPG-DFECECPEGYRYNLKSKSCED-IDECSE--NMCA-QLCVN   59 (87)
T ss_dssp             CSSSSSSSSBTTSSCCCBTT-BCCCSSSTTCEEETTTTEEEC-CCHHHH--SCCS-SEECC
T ss_pred             ccccCCCCCCCCCEeECCCC-CEEEECCCCceECCCCCcCCC-cCeeCC--CCCC-CEEEc
Confidence            4565544446 457887776 699999999999877 88864 334532  2343 45554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.68  E-value=7.8  Score=44.21  Aligned_cols=398  Identities=10%  Similarity=0.040  Sum_probs=193.2

Q ss_pred             eeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCC
Q psy5768          40 ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG  119 (652)
Q Consensus        40 ~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg  119 (652)
                      +..|..|. ++.||+..   ..+.|++++......+.+........+.    .|..|. .++|++.- ..+-+.+.+.+.
T Consensus       175 i~~i~~d~-~g~lwigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~i~----~i~~d~-~g~lwigt-~~~Gl~~~~~~~  244 (795)
T 4a2l_A          175 IASTLYRQ-GDQIYIGT---STDGLYTYSITQKTFEKVIPILGTKQIQ----AILQQS-PTRIWVAT-EGAGLFLINPKT  244 (795)
T ss_dssp             CEEEEEEE-TTEEEEEE---SSSCEEEEETTTCCEEECC----CCCEE----EEEEEE-TTEEEEEE-BSSCEEEEETTT
T ss_pred             eEEEEECC-CCCEEEEE---CCCCEEEEeCCCCeEEEecCCCCCCeeE----EEEEcC-CCCEEEEE-CCCCeEEEeCCC
Confidence            67888884 57888765   3346888887654333321111022355    778885 45555443 233477777765


Q ss_pred             CcEEEEEeC-----C--CCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec-------ccCceeEEEecc
Q psy5768         120 QYRYVLISG-----G--VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-------IMPIKDITLDLK  185 (652)
Q Consensus       120 ~~~~~l~~~-----~--~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~-------~~~p~gl~lD~~  185 (652)
                      .....+...     .  ....+.|+.|+ +|.|+....  . .|.+.+........+....       -.....|..|..
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~--~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~  320 (795)
T 4a2l_A          245 KEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWIGTF--N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ  320 (795)
T ss_dssp             TEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEEEES--S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred             CeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEEEeC--C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence            433333221     1  13467888997 677766543  2 5666665443322222110       124566777753


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCC
Q psy5768         186 FFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHG  265 (652)
Q Consensus       186 ~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G  265 (652)
                       +.|++....+|-. .+  .....               .++.|....    .    .++       +....-.+.+.. 
T Consensus       321 -g~lWigt~~~Gl~-~~--~~~~~---------------~~~~~~~~~----~----~~~-------l~~~~V~~i~~d-  365 (795)
T 4a2l_A          321 -GGMWLGTYFGGLN-YY--HPIRN---------------RFKNIRNIP----Y----KNS-------LSDNVVSCIVED-  365 (795)
T ss_dssp             -SCEEEEESSSCEE-EE--CGGGG---------------SSEEECCCT----T----SSS-------CSCSSEEEEEEC-
T ss_pred             -cCEEEEECCCCeE-Ee--CCCcc---------------cceEEcCCC----C----CCC-------CCCCeeEEEEEC-
Confidence             4554444433321 11  00000               011111000    0    000       000011222221 


Q ss_pred             ccccCCCcccccceEEEEeee-cceeEEecCCCCCCCCCceeeeec-------cccceEEEEEEEcCCCeEEEeeccccc
Q psy5768         266 VVAQDGKSCSEYDAFIMYSRV-NRIDSIHMTDKSDLNSPFESIRNS-------TMMKNIIELSYDYKRKTLFYSDIQKGT  337 (652)
Q Consensus       266 ~l~~dg~~C~~~~~~Ll~s~~-~~i~~i~l~~~~~~~~p~~~~~~~-------~~~~~~~~v~~D~~~~~lywsd~~~~~  337 (652)
                                 .+.-|.+++. ..|.+++. ....    +..+...       -....+.++..|.. +.+.|.-...+.
T Consensus       366 -----------~~g~lWiGt~~~Gl~~~~~-~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt~~~G  428 (795)
T 4a2l_A          366 -----------KDKNLWIGTNDGGLNLYNP-ITQR----FTSYTLQEDESARGIGSNNIKAVYVDEK-KSLVYIGTHAGG  428 (795)
T ss_dssp             -----------TTSCEEEEESSSCEEEECT-TTCC----EEEECCC------CCSCSCEEEEEEETT-TTEEEEEETTTE
T ss_pred             -----------CCCCEEEEECCCCeEEEcC-CCCc----EEEEecCCCCcccCCCCccEEEEEEcCC-CCEEEEEeCcCc
Confidence                       1222444443 35655553 1111    1111100       01134677888864 453444333455


Q ss_pred             EEEEeccCCcceEEee-----ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeC------CCCCceE
Q psy5768         338 INSVFFNGSNHRVLLE-----RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLG------QHDKPRG  406 (652)
Q Consensus       338 I~~~~~~g~~~~~i~~-----~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~------~~~~P~~  406 (652)
                      |++++..+...+.+..     ....+..|+.|.. ++|+++..  +.+.+.+....   .-..+...      .....++
T Consensus       429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~  502 (795)
T 4a2l_A          429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGE-GNLWLGTL--SALVRFNPEQR---SFTTIEKEKDGTPVVSKQITT  502 (795)
T ss_dssp             EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS-SCEEEEES--SCEEEEETTTT---EEEECCBCTTCCBCCCCCEEE
T ss_pred             eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC-CCEEEEec--CceeEEeCCCC---eEEEccccccccccCCceEEE
Confidence            8888766543333321     1235788888864 45655543  45777775431   11111111      1245688


Q ss_pred             EEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE--c--CC--CCCceEEEecCCCEEEEEeCCCCeEEEEecCCCc
Q psy5768         407 IDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT--T--DI--TMPNALALDHQAEKLFWGDARLDKIERCDYDGTN  480 (652)
Q Consensus       407 Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~--~--~l--~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~  480 (652)
                      |+.|+ .|.|++...+    .|.+.+.++... .+..  .  .+  ....+|..|. .++|+.+-..  -|.+++.....
T Consensus       503 i~~d~-~g~lWigt~~----Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~~--Gl~~~d~~~~~  573 (795)
T 4a2l_A          503 LFRDS-HKRLWIGGEE----GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS-NGIIWVGTRE--GFYCFNEKDKQ  573 (795)
T ss_dssp             EEECT-TCCEEEEESS----CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT-TSCEEEEESS--CEEEEETTTTE
T ss_pred             EEECC-CCCEEEEeCC----ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC-CCCEEEEeCC--CceeECCCCCc
Confidence            99997 6778876642    577777655332 2110  0  11  2345777774 4566665543  57888876554


Q ss_pred             eEEEecC-CC--CceeEEEEe-CCEEEEEcCCCCeEEEEEccCC
Q psy5768         481 RIVLSKI-SP--LHPFDMAVY-GEFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       481 ~~~l~~~-~~--~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      .+.+... ++  ....+|+.+ ++.|+.+.  .+.|.+.++.++
T Consensus       574 ~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          574 IKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             EEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             EEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence            4333221 22  346778777 45776665  456777776544

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=94.48  E-value=0.012  Score=40.64  Aligned_cols=20  Identities=35%  Similarity=0.929  Sum_probs=16.7

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ..|++++|+|.||+||+.+|
T Consensus         6 ~~C~~~~f~C~~g~CI~~~~   25 (44)
T 3a7q_B            6 KECEKDQFQCRNERCIPSVW   25 (44)
T ss_dssp             --CCTTEEECTTSCEEEGGG
T ss_pred             CCCCCCceEcCCCCEeChhh
Confidence            47899999999999999876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.41  E-value=5.5  Score=41.29  Aligned_cols=204  Identities=10%  Similarity=0.020  Sum_probs=114.9

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.+++|++... ++.+-...+.|...++........+ .....+..|++++.++.| .+-+..++|.+-++.+.    
T Consensus       109 ~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l-~sgs~D~~i~iwd~~~~----  182 (410)
T 1vyh_C          109 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL-ASCSADMTIKLWDFQGF----  182 (410)
T ss_dssp             SCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE-EEEETTSCCCEEETTSS----
T ss_pred             CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCC----
Confidence            4567788887655 4444445677888887654433333 344568889998866654 45566677887787543    


Q ss_pred             EEEEEe-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         393 IVVVRL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       393 ~~~~~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      +.+..+ .......+++++|...+|+-....   ..|...++........+...-.+...+++.+.+..|.-+ ...+.|
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~-s~D~~v  258 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC-SNDQTV  258 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSCE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE-cCCCeE
Confidence            222222 233567889999976666554433   256555554333222222223455677777666555544 344667


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEeC---------------------CEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVYG---------------------EFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~~---------------------~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ...++........+.........+++..                     +.+..+-...+.|..-+..+|.....+.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence            7777765544433332223344555432                     3344555555666666666665444443

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=94.23  E-value=0.017  Score=50.84  Aligned_cols=39  Identities=33%  Similarity=0.767  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|...++.|.+.|+..++ +|+|.|+.||.|..| ++|..
T Consensus        82 d~C~~~~~~C~~~C~~~~g-~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           82 KLCSLDNGDCDQFCHEEQN-SVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             CGGGTGGGGCSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             CccccCCCCCCCEeECCCC-CEEEECCCCcEECCCCCccCc
Confidence            5677666778888887665 688999999988877 77865

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.22  E-value=4.8  Score=39.83  Aligned_cols=189  Identities=11%  Similarity=0.026  Sum_probs=106.4

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCc----ceEEeeccCceeeeEEEccCC-EEEEEeCCCCeEEEEEc-CC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN----HRVLLERQGSVEGLAYEYVHN-YLYWTCNNDATINKIDL-DS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~----~~~i~~~~~~~~glAvDw~~~-~LYwtd~~~~~I~~~~~-~~  387 (652)
                      ..+.+++|.+..+.|+.+. ..+.|...+++...    ...+......+..+++...++ .|+... ..+.|.+.++ .+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~   89 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGS   89 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccC
Confidence            4577889998766666554 44777777766544    223334445788999998777 666554 5678988887 55


Q ss_pred             CCCccEEEEEeC--CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC---------CCceEEEEcCCCCCceEEEec
Q psy5768         388 PKAQRIVVVRLG--QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG---------FGTESIITTDITMPNALALDH  456 (652)
Q Consensus       388 ~~~~~~~~~~~~--~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG---------~~~~~l~~~~l~~P~glaiD~  456 (652)
                      ..   ...+ ..  ......+|++.| .++|+.....   ..|...++..         ......+. .-..+..+++.+
T Consensus        90 ~~---~~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           90 PS---FQAL-TNNEANLGICRICKYG-DDKLIAASWD---GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SS---EEEC-BSCCCCSCEEEEEEET-TTEEEEEETT---SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             Cc---eEec-cccCCCCceEEEEeCC-CCEEEEEcCC---CeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            32   2222 23  345678999999 6666665543   2565555543         11111111 112455677664


Q ss_pred             CCCEEEEEeCCCCeEEEEecCC-Cc--eEEEecCCCCceeEEEEeC--CEEEEEcCCCCeEEEEE
Q psy5768         457 QAEKLFWGDARLDKIERCDYDG-TN--RIVLSKISPLHPFDMAVYG--EFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG-~~--~~~l~~~~~~~p~glav~~--~~lYwtd~~~~~I~~~~  516 (652)
                      .  .|+.+ ...+.|...++.. ..  ...........+.++++..  +.++.+-...+.|...+
T Consensus       161 ~--~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          161 S--RLIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             S--EEEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             C--cEEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence            4  35554 3456788888876 32  2222222224456777753  33444444455554433

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=94.21  E-value=0.016  Score=54.39  Aligned_cols=39  Identities=33%  Similarity=0.767  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|...++.|.+.|+..++ +|+|.|+.||.|..| ++|..
T Consensus        82 deC~~~~~~C~~~C~n~~g-sy~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B           82 KLCSLDNGDCDQFCHEEQN-SVVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             CGGGTGGGGCSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCCCCEeECCCC-CeEEECCCCceeCCCCCcccc
Confidence            5687767789999987765 699999999999888 88875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=94.21  E-value=0.99  Score=50.88  Aligned_cols=199  Identities=11%  Similarity=0.035  Sum_probs=108.2

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-ecc------------------CceeeeEEEccCCEEEEEeCC
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQ------------------GSVEGLAYEYVHNYLYWTCNN  376 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~------------------~~~~glAvDw~~~~LYwtd~~  376 (652)
                      +..++|.+..++|.++.  .+.|+..++.+.....+. .+.                  ....++++.+.++.|+++...
T Consensus       112 ~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          112 IQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             BCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             cccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            34566777777776664  356777776554333332 111                  122478888889988876432


Q ss_pred             CC---------------------------------eEEEEEcCCCCCccEEEEEe-------CCCCCceEEEEeCCCCEE
Q psy5768         377 DA---------------------------------TINKIDLDSPKAQRIVVVRL-------GQHDKPRGIDIDSCDSRI  416 (652)
Q Consensus       377 ~~---------------------------------~I~~~~~~~~~~~~~~~~~~-------~~~~~P~~Iavdp~~g~L  416 (652)
                      ..                                 +|.+.++.+..  ....+.+       .......+++..|. +.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~  266 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA--YVGPQEVPVPAMIASSDYYFSWLTWVTD-ERV  266 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH--HHCCEECCCCHHHHTSCEEEEEEEESSS-SEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC--ccceeEccCCccCCCCcceEEEeEEeCC-CeE
Confidence            11                                 45555554321  0000011       11123467889997 655


Q ss_pred             EEE--ecCCCCCceEEEe----ecCCCceEEE----EcCCCCCc-----eEEEecCCCEEEEE-e--CCCCeEEEEecCC
Q psy5768         417 YWT--NWNSHLPSIQRAF----FSGFGTESII----TTDITMPN-----ALALDHQAEKLFWG-D--ARLDKIERCDYDG  478 (652)
Q Consensus       417 ywt--d~~~~~~~I~r~~----ldG~~~~~l~----~~~l~~P~-----glaiD~~~~~LYw~-D--~~~~~I~~~~ldG  478 (652)
                      .++  +......+|+..+    +++...+.+.    ...-.+..     .+++.+++++||+. .  .+...|+.+++++
T Consensus       267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             EEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence            555  3332223687777    5443333333    12222333     67888888888774 2  2345799999988


Q ss_pred             CceEEEecCCCCceeEEEE-eCCEEEEEcCC------CCeEEEEEccCC
Q psy5768         479 TNRIVLSKISPLHPFDMAV-YGEFIFWTDWV------IHAVLRANKYTG  520 (652)
Q Consensus       479 ~~~~~l~~~~~~~p~glav-~~~~lYwtd~~------~~~I~~~~k~~g  520 (652)
                      ...+.+.... ....++.. .++.||++...      ...+++++..+|
T Consensus       347 ~~~~~lt~~~-~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          347 ENAIQITSGK-WEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             TTCEECSCSS-SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             CceEecccCc-eEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            7755554322 22223322 56788888654      346888876444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.14  E-value=3.9  Score=46.54  Aligned_cols=191  Identities=13%  Similarity=0.149  Sum_probs=113.9

Q ss_pred             CCCeEEEeecccc----cEEEEec---cCC--cceEEeec--c----C--ceeeeEEE-ccCCEEEEEeCCCC----eEE
Q psy5768         324 KRKTLFYSDIQKG----TINSVFF---NGS--NHRVLLER--Q----G--SVEGLAYE-YVHNYLYWTCNNDA----TIN  381 (652)
Q Consensus       324 ~~~~lywsd~~~~----~I~~~~~---~g~--~~~~i~~~--~----~--~~~glAvD-w~~~~LYwtd~~~~----~I~  381 (652)
                      ..+++||+-...+    .++|...   +|.  ..++++..  +    +  ...+.++. +.++.|.|+....+    +|+
T Consensus       125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~  204 (751)
T 2xe4_A          125 YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIE  204 (751)
T ss_dssp             ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEE
T ss_pred             ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEE
Confidence            4578888854332    3667766   554  45666622  1    1  35667888 88888877665432    499


Q ss_pred             EEEcCCC-CCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCC-C-CceEEEeecCCCce--EEEEc-CCCCCceEEEe
Q psy5768         382 KIDLDSP-KAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-L-PSIQRAFFSGFGTE--SIITT-DITMPNALALD  455 (652)
Q Consensus       382 ~~~~~~~-~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~-~-~~I~r~~ldG~~~~--~l~~~-~l~~P~glaiD  455 (652)
                      ++++.+. ..-... +.    ....+++..|....||++..... . .+|++..+++...+  .+... .-.+-.++++.
T Consensus       205 v~dl~~g~~~l~~~-~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S  279 (751)
T 2xe4_A          205 FKRISDPSQTIADK-VS----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA  279 (751)
T ss_dssp             EEETTCTTCCCCCC-EE----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred             EEECCCCCEeCCcc-cc----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence            9998764 210001 11    01246788887778888765321 1 27999999776432  33332 11233467788


Q ss_pred             cCCCEEEEEeC--CCCeEEEEecCCC--ce--EEEecCCCCceeEEE-EeCCEEEEE-cC---CCCeEEEEEccC
Q psy5768         456 HQAEKLFWGDA--RLDKIERCDYDGT--NR--IVLSKISPLHPFDMA-VYGEFIFWT-DW---VIHAVLRANKYT  519 (652)
Q Consensus       456 ~~~~~LYw~D~--~~~~I~~~~ldG~--~~--~~l~~~~~~~p~gla-v~~~~lYwt-d~---~~~~I~~~~k~~  519 (652)
                      ++++.|+|...  ....|+.+++++.  ..  +.+.......-+++. ..++.||+. +.   ....|++++..+
T Consensus       280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            88999998753  3457888999875  23  444433322336665 447777775 43   245788888754

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.14  E-value=0.026  Score=43.52  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCCc--ccceecCCCceEEE
Q psy5768         236 GTNPCGVNNGGCA--ELCLYNGVSAVCAC  262 (652)
Q Consensus       236 ~~n~C~~~ng~Cs--~lC~~~~~~~~C~C  262 (652)
                      ++++|......|.  +.|++.+++|+|.|
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~   30 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLP   30 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEE
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecc
Confidence            5789987667785  48999999999993

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.10  E-value=0.68  Score=47.19  Aligned_cols=177  Identities=8%  Similarity=-0.060  Sum_probs=91.8

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc---cEEEEeC
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK---RETVVSQ   80 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~---~~~v~~~   80 (652)
                      +++....+.|++++++......+....+    .-..+.++++++..++|+...   ..+.|+.+++....   ....+..
T Consensus        26 l~~~~~d~~i~iw~~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~s---~d~~v~vwd~~~~~~~~~~~~~~~   98 (377)
T 3dwl_C           26 FVTTTATNQVELYEQDGNGWKHARTFSD----HDKIVTCVDWAPKSNRIVTCS---QDRNAYVYEKRPDGTWKQTLVLLR   98 (377)
T ss_dssp             EECCCSSSCBCEEEEETTEEEECCCBCC----CSSCEEEEEECTTTCCEEEEE---TTSSEEEC------CCCCEEECCC
T ss_pred             EEEecCCCEEEEEEccCCceEEEEEEec----CCceEEEEEEeCCCCEEEEEe---CCCeEEEEEcCCCCceeeeeEecc
Confidence            3444456778888887653222211111    235789999999877777655   55778888776543   2222223


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc----EEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY----RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~----~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I  156 (652)
                      . ...+.    .+++...++.|+... ..+.|.+.+++...    ...+..........+++.|...+|+....  ...|
T Consensus        99 ~-~~~v~----~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i  170 (377)
T 3dwl_C           99 L-NRAAT----FVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA--DRKA  170 (377)
T ss_dssp             C-SSCEE----EEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES--SSCE
T ss_pred             c-CCceE----EEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC--CCEE
Confidence            3 34455    777766455555444 46778887776543    23332213456789999995555554433  3445


Q ss_pred             EEEeCCCCC--------------c-EEEEe--ecccCceeEEEeccCCEEEEEeCC
Q psy5768         157 ARAGLDGKK--------------Q-TILAQ--EIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       157 ~~~~ldg~~--------------~-~~~~~--~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ...++....              + ..++.  ..-.....+++++.+..|+....+
T Consensus       171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             EEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT
T ss_pred             EEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC
Confidence            555543110              0 11111  112345677777766666655555

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=94.09  E-value=0.01  Score=53.09  Aligned_cols=41  Identities=29%  Similarity=0.700  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCCcc-cceecCCCceEEEeCCc-cccCCCccc
Q psy5768         235 TGTNPCGVNNGGCAE-LCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      .++++|..+++.|++ .|+..+++|+|.|+.|| +..++++|.
T Consensus       105 ~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A          105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             EECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred             CccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence            357889877778986 89988889999999998 557899884

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=94.05  E-value=0.01  Score=54.13  Aligned_cols=41  Identities=24%  Similarity=0.554  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCCcc-cceecCCCceEEEeCCc-cccCCCccc
Q psy5768         235 TGTNPCGVNNGGCAE-LCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      .++++|..+++.|.+ .|+..+++|+|.|+.|| +..|+++|.
T Consensus       120 ~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence            457889876678985 89988889999999998 567899884

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=94.02  E-value=0.019  Score=39.43  Aligned_cols=21  Identities=38%  Similarity=0.834  Sum_probs=18.2

Q ss_pred             CCCCCCCeeecCC-CCcccCCC
Q psy5768         631 MRDCRPGYFKCDN-NKCILSSH  651 (652)
Q Consensus       631 ~~~C~~~~f~C~~-~~Ci~~~~  651 (652)
                      ...|++++|+|.| |+|||.+|
T Consensus         4 ~~~C~~~~f~C~~~g~CI~~~~   25 (43)
T 2jm4_A            4 DVKCSLGYFPCGNITKCLPQLL   25 (43)
T ss_dssp             SCSCCTTEEECSSSSCEEEGGG
T ss_pred             CCCCCCCeeECCCCCeEcCHhh
Confidence            3578999999999 99999875

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=93.83  E-value=0.029  Score=50.76  Aligned_cols=39  Identities=21%  Similarity=0.446  Sum_probs=31.0

Q ss_pred             CCCCCC-CCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHL-NGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~-ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|... ++.|+|.|...++ +++|.|+.||.|..| ++|..
T Consensus       118 ~eC~~~~~~~C~~~C~n~~g-~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          118 NECTDFVDVPCSHFCNNFIG-GYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             CTTTC-CCCCSSSEEEEETT-EEEEECCTTCEECTTSSCEEC
T ss_pred             cccCCCCCCCCCCcccCcCC-CEEEecCCCcEECCCCCcccc
Confidence            567653 4679999987765 699999999999988 88864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.81  E-value=6.8  Score=40.19  Aligned_cols=146  Identities=11%  Similarity=-0.015  Sum_probs=88.8

Q ss_pred             CeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC
Q psy5768          39 KISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT  118 (652)
Q Consensus        39 ~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d  118 (652)
                      .+.+++|++.+.+|+...   ..+.|..+++........+... ...+.    .+++...++.| ++-+..+.|.+-++.
T Consensus       125 ~v~~v~~s~dg~~l~s~~---~d~~i~iwd~~~~~~~~~~~~h-~~~v~----~~~~~p~~~~l-~s~s~d~~v~iwd~~  195 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGA---EDRLIRIWDIENRKIVMILQGH-EQDIY----SLDYFPSGDKL-VSGSGDRTVRIWDLR  195 (393)
T ss_dssp             BEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCC-SSCEE----EEEECTTSSEE-EEEETTSEEEEEETT
T ss_pred             eEEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEccC-CCCEE----EEEEcCCCCEE-EEecCCCcEEEEECC
Confidence            378999999877777655   5688998998765444444444 45566    77777655545 454567888888887


Q ss_pred             CCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEee-------cccCceeEEEeccCCEEEE
Q psy5768         119 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-------IIMPIKDITLDLKFFSAFY  191 (652)
Q Consensus       119 g~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~-------~~~~p~gl~lD~~~~~ly~  191 (652)
                      .......+.. ......+++.|.+|.++.+-. ....|...++........+..       --.....+++++.+..|+-
T Consensus       196 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          196 TGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TTEEEEEEEC-SSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CCeeEEEEEc-CCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            6544433332 356788999986676665533 244566666543332211110       0234566777766666655


Q ss_pred             EeCC
Q psy5768         192 RNLS  195 (652)
Q Consensus       192 ~d~~  195 (652)
                      ...|
T Consensus       274 ~s~d  277 (393)
T 1erj_A          274 GSLD  277 (393)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            5554

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=93.81  E-value=0.034  Score=44.23  Aligned_cols=55  Identities=24%  Similarity=0.579  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCcc-ccccCCCCceeeeccCceeeccCCcccCcccccCCCceeeccCeecCC
Q psy5768         549 TPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPF  608 (652)
Q Consensus       549 ~~C~~~ng~Cs~-lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~~g~Ci~~  608 (652)
                      ++|.. +..|.| .|+..++ +|+|.|+.||.+ ..++|.. ...|.. .-.|.++.|+..
T Consensus         6 deC~~-~~~C~~g~C~n~~g-~y~C~C~~Gy~~-~g~~C~d-ideC~~-~~~C~~~~C~n~   61 (82)
T 1emn_A            6 DECKE-PDVCKHGQCINTDG-SYRCECPFGYIL-AGNECVD-TDECSV-GNPCGNGTCKNV   61 (82)
T ss_dssp             CSSSS-TTSCSSSEECCCSS-CCCEECCTTEEE-ETTEEEE-CCGGGT-CCTTSSSCEEEC
T ss_pred             ccCCC-CCCcCCCEEEecCC-CEEEECCCCeEC-CCCccCC-cccccC-CCCCCCCEeECC
Confidence            44443 233443 6777665 699999999987 2367764 344542 224556667653

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=93.78  E-value=0.025  Score=44.99  Aligned_cols=39  Identities=23%  Similarity=0.640  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCCcc-cceecCCCceEEEeCCccccCCCcccc
Q psy5768         236 GTNPCGVNNGGCAE-LCLYNGVSAVCACAHGVVAQDGKSCSE  276 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~l~~dg~~C~~  276 (652)
                      ++++|.. +..|.+ .|+..+.+|+|.|+.||.. +|+.|.+
T Consensus         4 dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~-~g~~C~d   43 (82)
T 1emn_A            4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL-AGNECVD   43 (82)
T ss_dssp             CCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE-ETTEEEE
T ss_pred             ccccCCC-CCCcCCCEEEecCCCEEEECCCCeEC-CCCccCC
Confidence            5688876 457876 8998888999999999954 5777753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.71  E-value=6.3  Score=39.47  Aligned_cols=173  Identities=9%  Similarity=-0.056  Sum_probs=100.4

Q ss_pred             EEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc--cE--EEE
Q psy5768           4 AVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK--RE--TVV   78 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~--~~--~v~   78 (652)
                      +++....+.|+++|.. ++....+...       -..+..++++|.++.|....   ..+.|..+++....  ..  ..+
T Consensus        70 l~s~s~Dg~v~iWd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~~~  139 (340)
T 1got_B           70 LLSASQDGKLIIWDSYTTNKVHAIPLR-------SSWVMTCAYAPSGNYVACGG---LDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECS-------SSCEEEEEECTTSSEEEEEE---TTCEEEEEETTTCSBSCEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCCcceEeecC-------CccEEEEEECCCCCEEEEEe---CCCeEEEEECccCCCcceeEEEe
Confidence            3444456788888866 4444444432       24688999999888877665   45778878776431  11  112


Q ss_pred             eCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5768          79 SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR  158 (652)
Q Consensus        79 ~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~  158 (652)
                      ... ...+.    .+++..  +..+.+-+..+.|.+.++........+.+-......+++.|. |.++.+-. ....|..
T Consensus       140 ~~h-~~~v~----~~~~~~--~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sg~-~d~~v~~  210 (340)
T 1got_B          140 AGH-TGYLS----CCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGA-CDASAKL  210 (340)
T ss_dssp             ECC-SSCEE----EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEE-TTSCEEE
T ss_pred             cCC-CccEE----EEEECC--CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC-CCEEEEEe-CCCcEEE
Confidence            223 33444    555542  333445556778888887654444444433456789999984 44545432 2456666


Q ss_pred             EeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         159 AGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       159 ~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      -++........+...-...+.+++.+.++.|.....|
T Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            6665433322222223456788888877766666655

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=93.66  E-value=0.028  Score=39.66  Aligned_cols=22  Identities=32%  Similarity=0.698  Sum_probs=19.2

Q ss_pred             CCCCCCCCCeeecCCC-CcccCCC
Q psy5768         629 CAMRDCRPGYFKCDNN-KCILSSH  651 (652)
Q Consensus       629 C~~~~C~~~~f~C~~~-~Ci~~~~  651 (652)
                      |. ..|.+++|+|.|| +||+.+|
T Consensus         3 C~-~~C~~~~F~C~~g~~CI~~~~   25 (48)
T 2i1p_A            3 MV-LNCTSAQFKCADGSSCINSRY   25 (48)
T ss_dssp             SC-CCCCSSSEECSSSSCEECGGG
T ss_pred             CC-CCCCCCeeECCCCCEeCCHhh
Confidence            65 5799999999999 8999876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.66  E-value=5.7  Score=44.42  Aligned_cols=176  Identities=13%  Similarity=0.049  Sum_probs=103.0

Q ss_pred             EEEecCCCCeEEEEecCCC------eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEE
Q psy5768           3 IAVSSPTQSKIVVCNLEGE------YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRET   76 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~   76 (652)
                      ++++....+.|+++++...      ....+..       .-..+..|++++...+|.-..   ..+.|..+++.......
T Consensus       397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-------h~~~v~~v~~s~~g~~l~sgs---~Dg~v~vwd~~~~~~~~  466 (694)
T 3dm0_A          397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-------HSHFVEDVVLSSDGQFALSGS---WDGELRLWDLAAGVSTR  466 (694)
T ss_dssp             EEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-------CSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCcEEEEEccCCCcccccccceecC-------CCCcEEEEEECCCCCEEEEEe---CCCcEEEEECCCCccee
Confidence            4555556678888887632      2233332       235788999999877777554   56889889887543333


Q ss_pred             EEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCC---CCCceeEEEcCCCC-eEEEEecCC
Q psy5768          77 VVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG---VDQPSALAVDPESG-YLFWSESGK  152 (652)
Q Consensus        77 v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~---~~~P~~iavd~~~g-~lywtd~~~  152 (652)
                      .+... ...+.    ++++...++.| .+-+..+.|.+.+..+.....+....   ......+++.|... .++.+-. .
T Consensus       467 ~~~~h-~~~v~----~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~  539 (694)
T 3dm0_A          467 RFVGH-TKDVL----SVAFSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS-W  539 (694)
T ss_dssp             EEECC-SSCEE----EEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE-T
T ss_pred             EEeCC-CCCEE----EEEEeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe-C
Confidence            33444 45567    88887655555 44445678888887776554443322   12356778877532 2333322 2


Q ss_pred             CCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         153 IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       153 ~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ...|..-++........+...-.....+++++.++.|.-...|
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D  582 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD  582 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            4456666665544333232223456777887766655555555

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.63  E-value=7.3  Score=39.95  Aligned_cols=203  Identities=12%  Similarity=0.043  Sum_probs=111.8

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV  394 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~  394 (652)
                      +.+++|.+..+.|+... ..+.|...++........+ .....+..|++.+.++.|+ +-+..++|.+-++...    +.
T Consensus       126 v~~v~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~----~~  199 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTG----QC  199 (393)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTT----EE
T ss_pred             EEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCC----ee
Confidence            56788887665555443 4577877777654333333 3344678899988887775 4456688888887542    23


Q ss_pred             EEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-------cCCCCCceEEEecCCCEEEEEeCC
Q psy5768         395 VVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-------TDITMPNALALDHQAEKLFWGDAR  467 (652)
Q Consensus       395 ~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-------~~l~~P~glaiD~~~~~LYw~D~~  467 (652)
                      ............+++.|..|.++.+-....  .|...++........+.       ..-.....+++.+.++.|+-+. .
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~  276 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-L  276 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             EEEEEcCCCcEEEEEECCCCCEEEEEcCCC--cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-C
Confidence            333334467889999996666555543322  44444443322111110       0112456788888877776553 3


Q ss_pred             CCeEEEEecCCCce------------EEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         468 LDKIERCDYDGTNR------------IVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       468 ~~~I~~~~ldG~~~------------~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .+.|...++.....            ...+........++++.. +....+-...+.|..-+..+|+....+.
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            45677777653211            111111223345666652 3333444455667766776776555544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=93.57  E-value=9.1  Score=44.54  Aligned_cols=198  Identities=12%  Similarity=0.019  Sum_probs=113.1

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccE
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI  393 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~  393 (652)
                      ..+.+++|++..+.|.... ..+.|+..+..+.........-..+..|++.+ ++.|. +-+..++|.+-++....  ..
T Consensus        18 ~~V~~lafspdg~~lAsgs-~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~-S~s~D~~v~lWd~~~~~--~~   92 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLV-VINAKDTVYVLSLYSQK--VL   92 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEE-TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEE-EEETTCEEEEEETTTCS--EE
T ss_pred             CCcEEEEECCCCCEEEEEe-CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEE-EEECcCeEEEEECCCCc--EE
Confidence            4578899999877665554 34677777665432222223344688999998 66454 44556888888886432  12


Q ss_pred             EEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-----------cCCCCCceEEEecCCCEEE
Q psy5768         394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-----------TDITMPNALALDHQAEKLF  462 (652)
Q Consensus       394 ~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-----------~~l~~P~glaiD~~~~~LY  462 (652)
                      ..+  .......+++++|...+|+.....   +.|...++++.....+..           ........|++.+.+..+.
T Consensus        93 ~~~--~~~~~V~~v~~sp~g~~l~sgs~d---g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           93 TTV--FVPGKITSIDTDASLDWMLIGLQN---GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             EEE--ECSSCEEEEECCTTCSEEEEEETT---SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             EEE--cCCCCEEEEEECCCCCEEEEEcCC---CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            222  233567899999988888877654   366666666543211110           0123457888887654444


Q ss_pred             EEeCCCCeEEEEecCCCceEEEecCC------------------CCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCce
Q psy5768         463 WGDARLDKIERCDYDGTNRIVLSKIS------------------PLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       463 w~D~~~~~I~~~~ldG~~~~~l~~~~------------------~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      .+-...+.| ..|+........+...                  .....++++. ++..+.+-...+.|..-+..+|+.
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            444555677 7787765433222211                  0224566665 233444444455555555555543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.55  E-value=7.4  Score=39.72  Aligned_cols=179  Identities=8%  Similarity=-0.034  Sum_probs=106.2

Q ss_pred             EEecCCCCeEEEEecCCC-eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC--CccEEEEeC
Q psy5768           4 AVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG--TKRETVVSQ   80 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg--s~~~~v~~~   80 (652)
                      +++....+.|.++|+... ....+.....  ......+..+++.+.++.++.+-  ...+.|..+++..  ..... +..
T Consensus       173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~sg--s~D~~v~~wd~~~~~~~~~~-~~~  247 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQRISIFGSEFP--SGHTADVLSLSINSLNANMFISG--SCDTTVRLWDLRITSRAVRT-YHG  247 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCEEEEECCCSS--SSCCSCEEEEEECSSSCCEEEEE--ETTSCEEEEETTTTCCCCEE-ECC
T ss_pred             EEEECCCCcEEEEEcCCCcEEEEeecccC--CCCccCeEEEEeecCCCCEEEEE--ECCCeEEEEECCCCCcceEE-ECC
Confidence            444456678889988744 3344432111  12345788999988777777666  5678898888763  23333 333


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCC-------CCCceeEEEcCCCCeEEEEecCCC
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-------VDQPSALAVDPESGYLFWSESGKI  153 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~-------~~~P~~iavd~~~g~lywtd~~~~  153 (652)
                      . ...+.    .+++.+ .++.+.+-+..+.|.+.++............       ......+++.|...+|+-..  ..
T Consensus       248 h-~~~v~----~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~d  319 (380)
T 3iz6_a          248 H-EGDIN----SVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--SN  319 (380)
T ss_dssp             C-SSCCC----EEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--TT
T ss_pred             c-CCCeE----EEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--CC
Confidence            3 45577    888886 4456666667888999998765444333321       11256899998555554432  24


Q ss_pred             CeEEEEeCCCCCcE-EEE---eecccCceeEEEeccCCEEEEEeCC
Q psy5768         154 PLIARAGLDGKKQT-ILA---QEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       154 ~~I~~~~ldg~~~~-~~~---~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ..|..-++...... .+.   ..--...+.|++.+.+..|.-...|
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred             CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence            56666665433222 221   1113456788888877766655555

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=93.43  E-value=0.034  Score=39.54  Aligned_cols=21  Identities=24%  Similarity=0.718  Sum_probs=18.0

Q ss_pred             CCCCCCCeeecC-CCCcccCCC
Q psy5768         631 MRDCRPGYFKCD-NNKCILSSH  651 (652)
Q Consensus       631 ~~~C~~~~f~C~-~~~Ci~~~~  651 (652)
                      ...|.+++|+|. +|+||+.+|
T Consensus         4 ~~~C~~~~F~C~~~g~CI~~~~   25 (50)
T 2knx_A            4 GKTCGPSSFSCPGTHVCVPERW   25 (50)
T ss_dssp             TCTTCTTEEEETTTTEEEETTT
T ss_pred             CCCCCCCcEEcCCCCeEcChhh
Confidence            357899999995 899999876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.43  E-value=6.4  Score=38.67  Aligned_cols=206  Identities=10%  Similarity=0.018  Sum_probs=115.0

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.+++|.+....|.-+. ..+.|...++........+ .....+..+++.+.++.|+-. +..++|.+-++....   
T Consensus        14 ~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~---   88 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGE---   88 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCC---
T ss_pred             CceEEEEECCCCCEEEEEc-CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCc---
Confidence            4577899998776666554 4577877777643322222 333456788898877776644 556888888875422   


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCc-eEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGT-ESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~-~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      .............+|+++|...+|+-....   ..|...++..... .......-.....+++.+..+.++.+-...+.|
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D---~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEECCC---CeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            222222344667899999977766654443   2555555543322 222222223456888887555444444455677


Q ss_pred             EEEecCCCce-EEEecCCCCceeEEEEe---CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         472 ERCDYDGTNR-IVLSKISPLHPFDMAVY---GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       472 ~~~~ldG~~~-~~l~~~~~~~p~glav~---~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ...++..... ..+..........+++.   ++.+..+-...+.|..-+..+++....+.
T Consensus       166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence            7778754332 22222221222334432   23344444455666666666665554444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.14  E-value=3.8  Score=46.57  Aligned_cols=175  Identities=9%  Similarity=0.006  Sum_probs=97.7

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECC--CCEEEEEeccCCcceEEEEEcCCCccEE--EEeCCCc
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPV--KGKMFWSNVTKQVVTIEMAFMDGTKRET--VVSQKKY   83 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~lyw~d~~~~~~~I~~~~~dgs~~~~--v~~~~~~   83 (652)
                      ...+.|.++++++.....+....+    .-..+.+|++.+.  .+.|+-..   ..+.|+.+++++.....  ..... .
T Consensus        28 ~~dg~I~vwd~~~~~~~~~~~l~~----h~~~V~~l~~s~~~~~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h-~   99 (753)
T 3jro_A           28 SSDKTIKIFEVEGETHKLIDTLTG----HEGPVWRVDWAHPKFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVH-S   99 (753)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEECC----CSSCEEEEEECCTTSCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCC-S
T ss_pred             ECCCcEEEEecCCCCCccceeccC----CcCceEEEEecCCCCCCEEEEEe---CCCeEEEEECCCCcccccccccCC-C
Confidence            356788888886443333222111    2357899999876  56666554   56788888887654222  22223 4


Q ss_pred             CCccCCCCcEEEEccC-CcEEEEeCCCCEEEEEEcCCC--cEEEEEeCCCCCceeEEEcCC------------CCeEEEE
Q psy5768          84 PAVTACNLHIAVDWIA-QNIYWSDPKENVIEVARLTGQ--YRYVLISGGVDQPSALAVDPE------------SGYLFWS  148 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~-~~lY~~d~~~~~I~v~~~dg~--~~~~l~~~~~~~P~~iavd~~------------~g~lywt  148 (652)
                      ..+.    .+++.... ++++++-+..+.|.+.++...  ...............++.+|.            +|.++.+
T Consensus       100 ~~V~----~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s  175 (753)
T 3jro_A          100 ASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT  175 (753)
T ss_dssp             SCEE----EEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred             CCeE----EEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEE
Confidence            4566    77777652 455555556789999988754  222233333456778888885            2444444


Q ss_pred             ecCCCCeEEEEeCCCCCcE-EEEe---ecccCceeEEEecc---CCEEEEEeCC
Q psy5768         149 ESGKIPLIARAGLDGKKQT-ILAQ---EIIMPIKDITLDLK---FFSAFYRNLS  195 (652)
Q Consensus       149 d~~~~~~I~~~~ldg~~~~-~~~~---~~~~~p~gl~lD~~---~~~ly~~d~~  195 (652)
                      -. ..+.|...++...... .+..   ..-.....+++.+.   +..|+-...+
T Consensus       176 gs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          176 GG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             EE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             EE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            32 2345555555433221 2111   11234567777766   4444444444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.09  E-value=13  Score=41.35  Aligned_cols=203  Identities=9%  Similarity=-0.025  Sum_probs=119.2

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc------eEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcC
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH------RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD  386 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~------~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~  386 (652)
                      ...+.++++.+.+..++.+-...+.|...++.....      ..+......+..+++.+.++.|. +-+..++|.+-++.
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-sgs~Dg~v~vwd~~  460 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLA  460 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred             CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEE-EEeCCCcEEEEECC
Confidence            355778888887777888777778888777654221      12223345678899998777665 55567889888875


Q ss_pred             CCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC---CCCCceEEEecCCC-EEE
Q psy5768         387 SPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD---ITMPNALALDHQAE-KLF  462 (652)
Q Consensus       387 ~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~---l~~P~glaiD~~~~-~LY  462 (652)
                      ..   ..............+++++|...+|.-....   ..|...++.+.....+....   ..+...+++.+... .+.
T Consensus       461 ~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          461 AG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             TT---EEEEEEECCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             CC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            42   1221222345677899999977766655433   24544455443322222111   12345677776542 333


Q ss_pred             EEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCce
Q psy5768         463 WGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEE  522 (652)
Q Consensus       463 w~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~  522 (652)
                      .+-...+.|...++........+........+|++.. +.++.+-...+.|..-+..+++.
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            4444556788888876655444443334556777763 34555555566666666655543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=93.08  E-value=6.8  Score=37.94  Aligned_cols=201  Identities=11%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.+++| +..+.|+.. ...+.|...+++.......+ .....+..+++.+.++.|+... ..+.|.+.++.......
T Consensus        19 ~~v~~~~~-~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~   95 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASV-SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGED   95 (313)
T ss_dssp             SCEEEEEE-EETTEEEEE-ETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSC
T ss_pred             CCcEEEEe-cCCCEEEEE-EcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCC
Confidence            45677888 555555544 45577888777654433333 4456789999999887776554 46778877776543221


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEec-CCCEEEEEeCCCCeE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH-QAEKLFWGDARLDKI  471 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~-~~~~LYw~D~~~~~I  471 (652)
                      .............+++.++  ++|+.....   +.|...+ .+..... +...-.....+++.+ ..+.|+.+ ...+.|
T Consensus        96 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~d---~~i~~~d-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i  167 (313)
T 3odt_A           96 PLYTLIGHQGNVCSLSFQD--GVVISGSWD---KTAKVWK-EGSLVYN-LQAHNASVWDAKVVSFSENKFLTA-SADKTI  167 (313)
T ss_dssp             C-CEECCCSSCEEEEEEET--TEEEEEETT---SEEEEEE-TTEEEEE-EECCSSCEEEEEEEETTTTEEEEE-ETTSCE
T ss_pred             cccchhhcccCEEEEEecC--CEEEEEeCC---CCEEEEc-CCcEEEe-cccCCCceeEEEEccCCCCEEEEE-ECCCCE
Confidence            1111122335566777753  455555433   2444433 2221111 222223445677766 45555544 344567


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      ...+ .+.....+..........+++. ++. +++-...+.|...+..+++....+.
T Consensus       168 ~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          168 KLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence            7666 2222222222122445667765 445 5555566777777777676655554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.03  E-value=2.7  Score=47.88  Aligned_cols=178  Identities=10%  Similarity=0.033  Sum_probs=100.2

Q ss_pred             EecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECC--CCEEEEEeccCCcceEEEEEcCCC--ccEEEEeC
Q psy5768           5 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPV--KGKMFWSNVTKQVVTIEMAFMDGT--KRETVVSQ   80 (652)
Q Consensus         5 v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~lyw~d~~~~~~~I~~~~~dgs--~~~~v~~~   80 (652)
                      ++....+.|+++++.......+....+    ....+..++++|.  .+.++...   ..+.|..+++...  ........
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~----h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWSQIAVHAV----HSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECC----CSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcccccccccC----CCCCeEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeec
Confidence            333456778888887664322222111    3357899999998  66777665   6688888887754  22222333


Q ss_pred             CCcCCccCCCCcEEEEcc------------CCcEEEEeCCCCEEEEEEcCCCc-E---EEEEeCCCCCceeEEEcCCC--
Q psy5768          81 KKYPAVTACNLHIAVDWI------------AQNIYWSDPKENVIEVARLTGQY-R---YVLISGGVDQPSALAVDPES--  142 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~------------~~~lY~~d~~~~~I~v~~~dg~~-~---~~l~~~~~~~P~~iavd~~~--  142 (652)
                      . ...+.    .+++...            .+.+..+-+..+.|.+.++.... .   ...+.........+++.|..  
T Consensus       144 ~-~~~v~----~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          144 H-AIGVN----SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             C-SSCEE----EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             C-CCceE----EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence            3 34456    7777653            24455555567788888876432 1   11222223567889999963  


Q ss_pred             CeEEEEecCCCCeEEEEeCCCCCc---EEEEee--cccCceeEEEeccCCEEEEEeCC
Q psy5768         143 GYLFWSESGKIPLIARAGLDGKKQ---TILAQE--IIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       143 g~lywtd~~~~~~I~~~~ldg~~~---~~~~~~--~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      |.++.+-. ..+.|..-++.....   ..+...  .-..+.++++++.+..|+....|
T Consensus       219 ~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D  275 (753)
T 3jro_A          219 RSYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (753)
T ss_dssp             SEEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred             CCEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence            55555432 244566655543211   111111  12345678888776666655555

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=92.65  E-value=0.038  Score=37.03  Aligned_cols=18  Identities=33%  Similarity=0.695  Sum_probs=16.1

Q ss_pred             CCCCeeecCC--CCcccCCC
Q psy5768         634 CRPGYFKCDN--NKCILSSH  651 (652)
Q Consensus       634 C~~~~f~C~~--~~Ci~~~~  651 (652)
                      |++++|+|.+  |+|||.+|
T Consensus         1 C~~~~f~C~~~~g~Cip~~~   20 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSW   20 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTS
T ss_pred             CCCCceecCCCCCCEeCccc
Confidence            7889999987  89999887

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=92.63  E-value=0.043  Score=37.41  Aligned_cols=20  Identities=25%  Similarity=0.564  Sum_probs=17.0

Q ss_pred             CCCCCCeeecCC-CCcccCCC
Q psy5768         632 RDCRPGYFKCDN-NKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~-~~Ci~~~~  651 (652)
                      ..|.+++|+|.+ |+||+.+|
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~   22 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRW   22 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGG
T ss_pred             CCCCCCceEeCCCCeEcChhh
Confidence            368999999985 99999875

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=92.41  E-value=0.042  Score=38.52  Aligned_cols=20  Identities=30%  Similarity=0.924  Sum_probs=17.2

Q ss_pred             CCCCCCeeecC-----CCCcccCCC
Q psy5768         632 RDCRPGYFKCD-----NNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~-----~~~Ci~~~~  651 (652)
                      ..|++++|+|.     +|+|||.+|
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~   29 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDW   29 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccc
Confidence            57899999998     799999876

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=92.28  E-value=0.031  Score=55.08  Aligned_cols=41  Identities=20%  Similarity=0.520  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCcc--cceecCCCceEEEeCCccccCCCccccc
Q psy5768         236 GTNPCGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSCSEY  277 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C~~~  277 (652)
                      ++++|......|++  .|++.+++|+|.|..||. .||+.|.+.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~-GnG~~C~d~   46 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT-GNGRQCVAE   46 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEE-ECSSSEEET
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC-CCCCcCCCC
Confidence            57899877778974  699999999999999996 489999843

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=92.23  E-value=0.025  Score=52.74  Aligned_cols=54  Identities=26%  Similarity=0.548  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCcccCcccccCCC--ceeecc-CeecCC
Q psy5768         547 AKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH--DFKCSD-GMCIPF  608 (652)
Q Consensus       547 ~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~~~~~~C~~~--~f~C~~-g~Ci~~  608 (652)
                      ..+||.  ||    .|+..++ +|+|.|+.||.+....+|.. ...|...  ...|.+ +.|+..
T Consensus         9 ~~~pC~--ng----~C~~~~g-~~~C~C~~G~~g~~~~~C~~-id~C~~~~~~~~C~~~~~C~~~   65 (186)
T 1z1y_A            9 VDTICX--NG----QLVQMSN-HFXCMCNEGLVHLSENTCEE-XNECXXETLGXACGEFGQCIEN   65 (186)
T ss_dssp             TTCCCB--TE----EEEECSS-CEEEEECTTEEEEETTEEEE-CCCCSGGGTTSEEETTEEEEEC
T ss_pred             CCCCCC--CC----EeECCCC-CeEeECCCCCccCCCCccCC-CCcccCCCCCCCCCCCCEeecC
Confidence            458887  44    4666665 69999999999874477874 3556533  345765 477754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=92.21  E-value=0.99  Score=45.93  Aligned_cols=163  Identities=8%  Similarity=0.002  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCCCe----eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc----cEEEEeC
Q psy5768           9 TQSKIVVCNLEGEY----QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK----RETVVSQ   80 (652)
Q Consensus         9 ~~~~I~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~----~~~v~~~   80 (652)
                      ..+.|.+++++...    ...+..       .-..+..+++++....|+...   ..+.|..++++...    ...+...
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLVLLR-------LNRAATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TTSSEEEC------CCCCEEECCC-------CSSCEEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEEECSS
T ss_pred             CCCeEEEEEcCCCCceeeeeEecc-------cCCceEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeEeecc
Confidence            45667777776543    222221       235789999999877777665   56788888777543    3333221


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc---------------EEEEEe--CCCCCceeEEEcCCCC
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY---------------RYVLIS--GGVDQPSALAVDPESG  143 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~---------------~~~l~~--~~~~~P~~iavd~~~g  143 (652)
                      . ...+.    .+++...++ +..+-+..+.|.+.++....               ...++.  ........+++.|...
T Consensus       145 h-~~~v~----~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          145 L-RSTIL----SLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             C-CSCEE----EEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS
T ss_pred             c-CCCeE----EEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC
Confidence            3 44566    888876444 44444456778888874110               111111  2234577899999666


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCc----EEEEeecccCceeEEEeccCCEE
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQ----TILAQEIIMPIKDITLDLKFFSA  189 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~----~~~~~~~~~~p~gl~lD~~~~~l  189 (652)
                      +|+....  ...|...++.....    ...+.........+++.+.+..|
T Consensus       219 ~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  266 (377)
T 3dwl_C          219 ALAYAGH--DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIV  266 (377)
T ss_dssp             CEEEEET--TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEE
T ss_pred             EEEEEeC--CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEE
Confidence            6665543  45666666554333    11111122346777777654433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.12  E-value=10  Score=37.80  Aligned_cols=165  Identities=15%  Similarity=0.114  Sum_probs=93.5

Q ss_pred             EEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC-C
Q psy5768           4 AVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ-K   81 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~-~   81 (652)
                      +++....+.|+++|+. ++...++..+       -..+.+|+++|.+..|+-..   ..+.|..+++.+......... +
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h-------~~~v~~v~~sp~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGH-------QSEVYSVAFSPDNRQILSAG---AEREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECC-------CSCEEEEEECSSTTEEEEEE---TTSCEEEEESSSCEEEECCTTTS
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCC-------CCcEEEEEECCCCCEEEEEc---CCCEEEEEeccCCceeeeecccC
Confidence            4444566788889886 5555555542       25789999999888887655   567888888875532222111 1


Q ss_pred             CcCCccCCCCcEEEEccCC---------cEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC
Q psy5768          82 KYPAVTACNLHIAVDWIAQ---------NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK  152 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~---------~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~  152 (652)
                      ....+.    .+++.....         .++.+-+..+.|.+.+.++.....+. .-......+++.|...+|.-..  .
T Consensus       161 ~~~~v~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs--~  233 (343)
T 2xzm_R          161 HSDWVS----CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGG--K  233 (343)
T ss_dssp             CSSCEE----EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEE--T
T ss_pred             CCceee----eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEc--C
Confidence            022234    555554331         34555556778888886655444332 2235678899998544444333  3


Q ss_pred             CCeEEEEeCC-CCCcEEEEeecccCceeEEEeccC
Q psy5768         153 IPLIARAGLD-GKKQTILAQEIIMPIKDITLDLKF  186 (652)
Q Consensus       153 ~~~I~~~~ld-g~~~~~~~~~~~~~p~gl~lD~~~  186 (652)
                      ...|..-++. .......... -...+.+++++..
T Consensus       234 dg~v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~  267 (343)
T 2xzm_R          234 DKKLLIWDILNLTYPQREFDA-GSTINQIAFNPKL  267 (343)
T ss_dssp             TCEEEEEESSCCSSCSEEEEC-SSCEEEEEECSSS
T ss_pred             CCeEEEEECCCCcccceeecC-CCcEEEEEECCCC
Confidence            4566666662 2222222211 1235566665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.02  E-value=0.68  Score=44.05  Aligned_cols=106  Identities=16%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             CCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCC-------CccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCC
Q psy5768          37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG-------TKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE  109 (652)
Q Consensus        37 ~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dg-------s~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~  109 (652)
                      +.++..++++| ++.||-..    .+.+++.+...       .....|-..+ ...-.    .+++| .+++||.+.  .
T Consensus        40 w~~~~~laf~P-~G~LYaV~----~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~----a~~fD-~~G~LYav~--d  106 (236)
T 1tl2_A           40 WSNFKFLFLSP-GGELYGVL----NDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQ----FLFFD-PNGYLYAVS--K  106 (236)
T ss_dssp             CTTCSEEEECT-TSCEEEEE----TTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCS----EEEEC-TTSCEEEEE--T
T ss_pred             cccceeEEECC-CccEEEEe----CCeEEEECCCCCCcccccccccEecccc-cccce----EEEEC-CCCCEEEeC--C
Confidence            67888999999 89999875    46799988743       1234455556 55567    89999 589999993  4


Q ss_pred             CEEEEEEc--CCCc-----EEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5768         110 NVIEVARL--TGQY-----RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA  159 (652)
Q Consensus       110 ~~I~v~~~--dg~~-----~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~  159 (652)
                      ++|.+.+.  ++..     -..+...+-..-..|+.+| +|.||-.. .  ..+.|.
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g~lyr~  159 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--QQFYKA  159 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--TEEEEE
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--CcEEec
Confidence            89999876  4432     1344444444558999999 89999887 3  346553

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=91.91  E-value=0.044  Score=43.29  Aligned_cols=24  Identities=21%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCeeecC-CCCcccCCC
Q psy5768         628 YCAMRDCRPGYFKCD-NNKCILSSH  651 (652)
Q Consensus       628 ~C~~~~C~~~~f~C~-~~~Ci~~~~  651 (652)
                      .|....|++++|+|. +|+|||.+|
T Consensus         3 ~C~~~~C~~~~f~C~~~g~CIp~~~   27 (80)
T 2kny_A            3 KLEGKTCGPSSFSCPGTHVCVPERW   27 (80)
T ss_dssp             SCSSCCCSSSEEECTTSSCEEEHHH
T ss_pred             CCCCCCCCCCceecCCCCeEcChhh
Confidence            377789999999998 689999754

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=91.70  E-value=0.1  Score=57.69  Aligned_cols=50  Identities=20%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceee-eccCceeeccCCcccCcccccCCCceeec
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVC-SCFTGKVLMEDNRSCTINTVCSEHDFKCS  601 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C-~Cp~g~~l~~d~~C~~~~~~C~~~~f~C~  601 (652)
                      .|..+||.. ++    .|+..+.++|+| .||.||.. ..++|.. ...|....-.|.
T Consensus         5 eC~~nPC~~-gg----~C~n~~~Gsy~C~~C~~GytG-dg~~CeD-iDEC~~~p~~C~   55 (634)
T 1yo8_A            5 GCLSNPCFP-GA----QCSSFPDGSWSCGFCPVGFLG-NGTHCED-LDECALVPDICF   55 (634)
T ss_dssp             GGGGCCSCT-TC----CEEECTTSCEEECCCCTTBCS-CSSSCCB-CCTTTTSCCCSC
T ss_pred             ccCCCCCCC-CC----EEecCCCCCeECCcCCCccCC-CCCCccc-cccccCCCCccc
Confidence            344566652 22    577777667999 99999973 2267764 334543333344

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=91.59  E-value=0.088  Score=53.52  Aligned_cols=44  Identities=34%  Similarity=0.758  Sum_probs=36.0

Q ss_pred             CCCCCCCC-CCCCcccceecCCCceEEEeCCc-cccCCCcccccce
Q psy5768         236 GTNPCGVN-NGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDA  279 (652)
Q Consensus       236 ~~n~C~~~-ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~  279 (652)
                      +.++|... ++.|.|.|+...++|+|.|+.|| +..++++|.+.++
T Consensus        42 ~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~   87 (317)
T 3h5c_B           42 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ   87 (317)
T ss_dssp             CSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSS
T ss_pred             CcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccccc
Confidence            68999863 47899999988889999999998 4568889985443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=91.47  E-value=21  Score=39.93  Aligned_cols=58  Identities=10%  Similarity=0.025  Sum_probs=34.1

Q ss_pred             CeEEEEecCCCceEEEecCCCCceeE--EEEeCCEEEEEcCCCCeEEEEEccCCceEEEEec
Q psy5768         469 DKIERCDYDGTNRIVLSKISPLHPFD--MAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~~~p~g--lav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      +.|..+|+......--.... ..+.+  ++..++.+|.. ...+.++.++..+|+.+..+..
T Consensus       457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeC
Confidence            56777777533222111111 11222  44457788887 4678899999888987766653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=91.20  E-value=24  Score=40.04  Aligned_cols=433  Identities=11%  Similarity=0.009  Sum_probs=204.5

Q ss_pred             CCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC-----C-Cc
Q psy5768          10 QSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ-----K-KY   83 (652)
Q Consensus        10 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~-----~-~~   83 (652)
                      ...|++++........+....... .....+..|..| .++.|++..   ....|++++......+.+...     . .-
T Consensus       136 ~~gl~~~~~~~~~~~~~~~~~~~~-l~~~~i~~i~~d-~~g~lwigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~  210 (781)
T 3v9f_A          136 YRGIEYLDIATGKFTHYNKSTVPA-LPSEQTWTATEA-EDGKLYIGH---VEGGLSILSLNDKSVKHFVHDPQNPNSLPG  210 (781)
T ss_dssp             SSCEEEEETTTTEEEEESTTTCTT-CSCCCEEEEEEE-ETTEEEEEE---TTTEEEEEETTTTEEEEECC--------CC
T ss_pred             CCCeeEEECCCCeEEeeccCcccC-CCccceEEEEEC-CCCCEEEEe---cCCCeEEEcCCCCceEeeecCCCCcccCCC
Confidence            456777777655554443211100 112457788887 468888765   334788888765533332111     0 01


Q ss_pred             CCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeC-------CCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5768          84 PAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-------GVDQPSALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        84 ~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~-------~~~~P~~iavd~~~g~lywtd~~~~~~I  156 (652)
                      ..+.    .|+.|. .++|++.-. . -+.+.+........+...       .....+.|..|. +|.|+....+  ..|
T Consensus       211 ~~i~----~i~~d~-~g~lwigt~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~--~Gl  280 (781)
T 3v9f_A          211 NDVR----CIYKDT-NGNIWIGTS-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNKLWIATEL--NGI  280 (781)
T ss_dssp             SSEE----EEEECT-TCCEEEEET-T-EEEEEETTTTEEEC-----------CCCCEEEEEECT-TSEEEEEESS--SCE
T ss_pred             Ccee----EEEEcC-CCCEEEEeC-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCCEEEEeCC--CCe
Confidence            2344    778885 556665543 3 677777654332222111       124577889996 7888776531  367


Q ss_pred             EEEeCCCCCcEEEEe-------e-----c--ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCC
Q psy5768         157 ARAGLDGKKQTILAQ-------E-----I--IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSY  222 (652)
Q Consensus       157 ~~~~ldg~~~~~~~~-------~-----~--~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  222 (652)
                      .+.+.+......+..       .     .  -.....|..|.. +.|++...++|- ..+  +.....            
T Consensus       281 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~-g~lWigt~~~Gl-~~~--~~~~~~------------  344 (781)
T 3v9f_A          281 MILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF-NNIWIGTWGGGI-NFI--SNAPPT------------  344 (781)
T ss_dssp             EEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS-CCEEEEEBSSCE-EEE--CSSCCS------------
T ss_pred             EEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC-CCEEEEecCCeE-EEe--CCCCCc------------
Confidence            777665443322221       1     1  123456677753 344333333332 111  000000            


Q ss_pred             cceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEee-ecceeEEecCCCCCCC
Q psy5768         223 LKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSR-VNRIDSIHMTDKSDLN  301 (652)
Q Consensus       223 ~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~  301 (652)
                         .+.|.....   +  ...++       +....-.+.+..            .+.-|.+++ ...|.+++. ..... 
T Consensus       345 ---~~~~~~~~~---~--~~~~~-------l~~~~v~~i~~d------------~~g~lWigt~~~Gl~~~~~-~~~~~-  395 (781)
T 3v9f_A          345 ---FHTWSYSPT---Q--MNESS-------LSNKVVSSVCDD------------GQGKLWIGTDGGGINVFEN-GKRVA-  395 (781)
T ss_dssp             ---CEEEC-------C--CCSSC-------CSSSCEEEEEEC------------TTSCEEEEEBSSCEEEEET-TEEEE-
T ss_pred             ---ceeeccCcc---c--cccCC-------CCCcceEEEEEc------------CCCCEEEEeCCCcEEEEEC-CCCeE-
Confidence               011110000   0  00000       000011122221            122344544 455666554 11110 


Q ss_pred             CCceeeee--ccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee---ccCceeeeEEEccCCEEEEEeCC
Q psy5768         302 SPFESIRN--STMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE---RQGSVEGLAYEYVHNYLYWTCNN  376 (652)
Q Consensus       302 ~p~~~~~~--~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~---~~~~~~glAvDw~~~~LYwtd~~  376 (652)
                         ..+..  ......+.++..|. .+.|++... .+.|++++......+.+..   ....+..|+.|. .++|++... 
T Consensus       396 ---~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~-  468 (781)
T 3v9f_A          396 ---IYNKENRELLSNSVLCSLKDS-EGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH-  468 (781)
T ss_dssp             ---ECC-----CCCSBEEEEEECT-TSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET-
T ss_pred             ---EEccCCCCCCCcceEEEEECC-CCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC-
Confidence               00000  00113466777775 455666543 3557777765433222221   124677888885 456666543 


Q ss_pred             CCeEEEEEcCCCCCccEEEEEeC----CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc-CC--CCC
Q psy5768         377 DATINKIDLDSPKAQRIVVVRLG----QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-DI--TMP  449 (652)
Q Consensus       377 ~~~I~~~~~~~~~~~~~~~~~~~----~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-~l--~~P  449 (652)
                       +.+.+++..+..  ........    ....+.+|+.|+ .|.|+++..+   ..+.+.+.++...+.+... .+  ...
T Consensus       469 -~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~---~Gl~~~~~~~~~~~~~~~~~~l~~~~i  541 (781)
T 3v9f_A          469 -AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG---GGVGIYTPDMQLVRKFNQYEGFCSNTI  541 (781)
T ss_dssp             -TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS---SCEEEECTTCCEEEEECTTTTCSCSCE
T ss_pred             -CceEEEeCCCCe--EEecccCcccccccceeEEEEEcC-CCCEEEEEcC---CCEEEEeCCCCeEEEccCCCCCCCCee
Confidence             568888765422  11221111    025678999998 6788877653   1577766554432222211 12  123


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecC-CC--CceeEEEEe-CCEEEEEcCCCCeEEEEEccCC
Q psy5768         450 NALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKI-SP--LHPFDMAVY-GEFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~-~~--~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      .+|..|. .++|+.+.. .+-|.+++......+.+... ++  ....+|+.+ ++.|+.+.  .+.|.++++.++
T Consensus       542 ~~i~~d~-~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~  612 (781)
T 3v9f_A          542 NQIYRSS-KGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSKK  612 (781)
T ss_dssp             EEEEECT-TSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTTT
T ss_pred             EEEEECC-CCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCCC
Confidence            5777774 456666554 33337777665444433221 22  245788877 46777764  345777776543

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=91.08  E-value=0.047  Score=46.79  Aligned_cols=38  Identities=24%  Similarity=0.581  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCCCcccceecCCCceEEEeCCc-cccC-CCcc
Q psy5768         236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQD-GKSC  274 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~d-g~~C  274 (652)
                      ++++|.. +..|.+.|+..+++|+|.|+.|| +..+ +++|
T Consensus        79 dideC~~-~~~C~~~C~n~~g~y~C~C~~G~~g~~~~g~~C  118 (118)
T 1dx5_I           79 DIDECEN-GGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  118 (118)
T ss_dssp             ECCHHHH-CSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred             cccccCC-CCCCcCeEEeCCCCEEEECCCCCccCCCCCCCC
Confidence            4688876 35788899988889999999998 4445 6665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.06  E-value=11  Score=35.85  Aligned_cols=149  Identities=10%  Similarity=-0.008  Sum_probs=85.7

Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc----cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceE
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ----RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ  429 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~----~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~  429 (652)
                      +......||+++ ++.||-+  ..+.+.+++.......    ..+.+-......-.++.+|| +|.||...-    ++|+
T Consensus        39 gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~d----G~iy  110 (236)
T 1tl2_A           39 GWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVSK----DKLY  110 (236)
T ss_dssp             SCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEET----TEEE
T ss_pred             ccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeCC----CEEE
Confidence            456788999999 8889998  4678998886331111    23344333445578999998 899999822    4999


Q ss_pred             EEee--cCCCc-----eEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC-CC------ceEEEecCCCCceeEE
Q psy5768         430 RAFF--SGFGT-----ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD-GT------NRIVLSKISPLHPFDM  495 (652)
Q Consensus       430 r~~l--dG~~~-----~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld-G~------~~~~l~~~~~~~p~gl  495 (652)
                      |..-  +|...     ..+....-..-..|..|++ +.||-+.  .+++++-..- +.      ...++.... .+-+-+
T Consensus       111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~-G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~  186 (236)
T 1tl2_A          111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN-GYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKF  186 (236)
T ss_dssp             EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT-SCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEE
T ss_pred             EeCCCcCCCCceeccccEeccCCCCceEEEEECCC-ceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceEEE
Confidence            8876  44332     2222222222357777755 6777766  3445543222 11      112222222 233333


Q ss_pred             EEe--CCEEEEEcCCCCeEEEEE
Q psy5768         496 AVY--GEFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       496 av~--~~~lYwtd~~~~~I~~~~  516 (652)
                      .++  ++.||+.+  .+.+++..
T Consensus       187 l~f~~~G~l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          187 LFFSSVGTLFGVQ--GGKFYEDY  207 (236)
T ss_dssp             EEECTTSCEEEEE--TTEEEEES
T ss_pred             EEECCCCcEEEEe--CCeEEecC
Confidence            333  45777777  66677654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.52  E-value=15  Score=37.78  Aligned_cols=198  Identities=11%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc-----------eEEee-cc------------CceeeeEEEccCC-
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----------RVLLE-RQ------------GSVEGLAYEYVHN-  368 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~-----------~~i~~-~~------------~~~~glAvDw~~~-  368 (652)
                      ..+.+++|++..+.|.... ..+.|...++.....           ...+. ..            ..+..|++.+.++ 
T Consensus        29 ~~V~~v~~s~~g~~la~g~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGD-KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEE-TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             CcEEEEEECCCCCEEEEEc-CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            4578899998666665554 346777777654321           11122 11            4477788877652 


Q ss_pred             EEEEEeCCCCeEEEEEcCCCCCc-------------------------------------cEEEEEeCCCCCceEEEEeC
Q psy5768         369 YLYWTCNNDATINKIDLDSPKAQ-------------------------------------RIVVVRLGQHDKPRGIDIDS  411 (652)
Q Consensus       369 ~LYwtd~~~~~I~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~P~~Iavdp  411 (652)
                      .++.+-+..+.|.+-++......                                     ....+.........+++++|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            34445556677776665421000                                     00011123345678899999


Q ss_pred             CCCEEEEEecCCCCCceEEEeec-CCCceEEE-------EcCCCCCceEEEecCC-CEEEEEeCCCCeEEEEecCCCce-
Q psy5768         412 CDSRIYWTNWNSHLPSIQRAFFS-GFGTESII-------TTDITMPNALALDHQA-EKLFWGDARLDKIERCDYDGTNR-  481 (652)
Q Consensus       412 ~~g~Lywtd~~~~~~~I~r~~ld-G~~~~~l~-------~~~l~~P~glaiD~~~-~~LYw~D~~~~~I~~~~ldG~~~-  481 (652)
                      ...+| .+- ..  ..|...++. +.....++       ...-.....+++++.+ ..|+.+ ...+.|...++..... 
T Consensus       188 ~~~~l-~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          188 DYETY-LSA-DD--LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-SSKGTIRLCDMRASALC  262 (447)
T ss_dssp             TSSEE-EEE-CS--SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-ETTSCEEEEETTTCSSS
T ss_pred             CCCEE-EEe-CC--CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE-eCCCeEEEEECcCCccc
Confidence            65544 443 22  366666665 22111111       0112345788998887 555544 4456788888876543 


Q ss_pred             ----EEEecCCC-----------CceeEEEEeC--CEEEEEcCCCCeEEEEEccC
Q psy5768         482 ----IVLSKISP-----------LHPFDMAVYG--EFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       482 ----~~l~~~~~-----------~~p~glav~~--~~lYwtd~~~~~I~~~~k~~  519 (652)
                          +.+.....           ....+|++..  .+|.....  +.|...+..+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~  315 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM  315 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence                33322111           1456677653  35554443  6666555543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=90.31  E-value=17  Score=36.84  Aligned_cols=182  Identities=12%  Similarity=0.072  Sum_probs=97.1

Q ss_pred             EEEecCC-CCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC-CCccEEEEeC
Q psy5768           3 IAVSSPT-QSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD-GTKRETVVSQ   80 (652)
Q Consensus         3 i~v~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d-gs~~~~v~~~   80 (652)
                      +++++.+ .+.|+++|++...........       ..+.+|+|+|...+|....    ...+.++... |.........
T Consensus       148 la~as~~~d~~i~iwd~~~~~~~~~~~~~-------~~V~~v~fspdg~~l~s~s----~~~~~~~~~~~~~~~~~~~~~  216 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTEKFEIETR-------GEVKDLHFSTDGKVVAYIT----GSSLEVISTVTGSCIARKTDF  216 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEEEEEEECS-------SCCCEEEECTTSSEEEEEC----SSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEECCCCCEEEEeECCCCcEEEEeCCC-------CceEEEEEccCCceEEecc----ceeEEEEEeccCcceeeeecC
Confidence            4455543 466888888755443333221       3588999999877776544    3455555543 4432222222


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeC-CCC--EEEEEEcCCCcEEE----EEeCCCCCceeEEEcCCCCeEEEEecCCC
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDP-KEN--VIEVARLTGQYRYV----LISGGVDQPSALAVDPESGYLFWSESGKI  153 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~-~~~--~I~v~~~dg~~~~~----l~~~~~~~P~~iavd~~~g~lywtd~~~~  153 (652)
                      +.-..+.    .+++...+..+..+.. ...  .|...+........    .+.+.......+++.|...+|.-..  ..
T Consensus       217 ~~~~~v~----~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs--~D  290 (365)
T 4h5i_A          217 DKNWSLS----KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS--ND  290 (365)
T ss_dssp             CTTEEEE----EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE--TT
T ss_pred             CCCCCEE----EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc--CC
Confidence            1123355    7787765555544322 122  34444443332221    1223334567899999555554443  24


Q ss_pred             CeEEEEeCCCCCc-EEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEE
Q psy5768         154 PLIARAGLDGKKQ-TILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHII  202 (652)
Q Consensus       154 ~~I~~~~ldg~~~-~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i  202 (652)
                      ..|..-++..... ..+...--...++|++.+.+.+|.=...| +..|+.
T Consensus       291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D-~tvrvw  339 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA-NTIHII  339 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT-SEEEEE
T ss_pred             CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC-CeEEEE
Confidence            4666666643222 22221113467899999887777666666 455544

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=90.30  E-value=0.058  Score=48.13  Aligned_cols=37  Identities=19%  Similarity=0.545  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCCCcc-cceecCCCceEEEeCCcc-ccCCCcc
Q psy5768         236 GTNPCGVNNGGCAE-LCLYNGVSAVCACAHGVV-AQDGKSC  274 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~l-~~dg~~C  274 (652)
                      ++++|+.  ..|.+ .|+..+++|+|.|++||. ..++++|
T Consensus         3 dideC~~--~pC~ng~C~n~~g~y~C~C~~G~~g~~~~~~C   41 (147)
T 2w86_A            3 DIDECES--SPCINGVCKNSPGSFICECSSESTLDPTKTIC   41 (147)
T ss_dssp             CCCGGGG--CCSBTSEEEEETTEEEEECCTTEEECTTSSBE
T ss_pred             cCccCcC--CCCCCCEeECCCCCEEeECCCCcccCCCCCee
Confidence            4677875  35765 899888899999999984 3344444

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=90.10  E-value=0.09  Score=36.79  Aligned_cols=20  Identities=30%  Similarity=0.924  Sum_probs=17.3

Q ss_pred             CCCCCCeeecC-----CCCcccCCC
Q psy5768         632 RDCRPGYFKCD-----NNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~-----~~~Ci~~~~  651 (652)
                      ..|++++|+|.     +++|||.+|
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~   27 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDW   27 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGG
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhh
Confidence            46899999998     789999876

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=89.97  E-value=0.058  Score=48.99  Aligned_cols=40  Identities=20%  Similarity=0.486  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCC-cccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         236 GTNPCGVNNGGC-AELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       236 ~~n~C~~~ng~C-s~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      ++|+|+.. ..| .+.|+..+.+|+|.|+.|| +..+|++|.+
T Consensus         2 dideC~~~-~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d   43 (162)
T 1uzk_A            2 DVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (162)
T ss_dssp             CCCGGGST-TSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             ccccCCCC-CCCCCCEeECCCCCEEEeCCCCCeECCCCCcccC
Confidence            46888753 356 4689988889999999999 4567888864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=89.49  E-value=17  Score=35.78  Aligned_cols=204  Identities=12%  Similarity=0.052  Sum_probs=113.1

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcce------EEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHR------VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~------~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ..+.++++.+..+.++.+-...+.|..-++.+....      .+......+..+++...++.|+ +-+..++|.+-++..
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~s~D~~v~~wd~~~   96 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVAT   96 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEE-EEeCCCEEEEEECCC
Confidence            446778888776666676666677776665532211      1112344678889988777665 445668888888754


Q ss_pred             CCCccEEEEE-eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCC-----CEE
Q psy5768         388 PKAQRIVVVR-LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQA-----EKL  461 (652)
Q Consensus       388 ~~~~~~~~~~-~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~-----~~L  461 (652)
                      .    +.+.. ........+++++|...+|.-....   ..|....+.+.....+.. .-.+...+++.+..     ..+
T Consensus        97 ~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           97 G----ETYQRFVGHKSDVMSVDIDKKASMIISGSRD---KTIKVWTIKGQCLATLLG-HNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             T----EEEEEEECCSSCEEEEEECTTSCEEEEEETT---SCEEEEETTSCEEEEECC-CSSCEEEEEECCC------CCE
T ss_pred             C----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEec-cCCcEEEEEEccCCCCCCCccE
Confidence            2    22222 2344667899999966555544433   255555666543333221 12234455555432     223


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEE
Q psy5768         462 FWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTL  526 (652)
Q Consensus       462 Yw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~  526 (652)
                      +.+-...+.|...++........+........++++.. +.++.+-...+.|..-+..+++....+
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            33434456677777765544333333334456777652 344444445566666666655544444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=89.28  E-value=20  Score=36.30  Aligned_cols=208  Identities=10%  Similarity=-0.035  Sum_probs=112.7

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC--
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA--  390 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~--  390 (652)
                      ..+.+++|.+..+.|+-. ...+.|...++........+ .....+..+++.+.++.|. +-+..+.|.+.++.....  
T Consensus        67 ~~V~~~~~sp~~~~l~s~-s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la-s~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWIVSA-SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA-CGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             SCEEEEEECTTSSCEEEE-ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE-ECCSSSCCEEEECCCCSSCC
T ss_pred             cEEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE-EeeCCCcEEEEECCCCcccc
Confidence            457788888866555444 44577777776544333223 3344678899998777665 444556676666643210  


Q ss_pred             -c--cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC-----CCCCceEEEecCCCEEE
Q psy5768         391 -Q--RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD-----ITMPNALALDHQAEKLF  462 (652)
Q Consensus       391 -~--~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~-----l~~P~glaiD~~~~~LY  462 (652)
                       .  ...++ .........++..|..+..+.|-...  ..|...++........+...     ......+++....+.++
T Consensus       145 ~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D--~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          145 GNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGD--QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             CSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTT--SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             CCccceeec-cCCCcceEEEEEecCCCCEEEEECCC--CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence             0  00011 11223345566667555444443332  25555555443332222111     12334666766556666


Q ss_pred             EEeCCCCeEEEEecCC--CceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         463 WGDARLDKIERCDYDG--TNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       463 w~D~~~~~I~~~~ldG--~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .+-...+.|...|+..  ...+++ ........+|++.. +..+.+-...+.|..-+..+|....++.
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            6655667788888752  233333 22224457788763 4556666677778777877776555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=89.22  E-value=19  Score=35.85  Aligned_cols=173  Identities=10%  Similarity=-0.003  Sum_probs=92.5

Q ss_pred             EEecCCCCeEEEEecCCC--------eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE
Q psy5768           4 AVSSPTQSKIVVCNLEGE--------YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE   75 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~   75 (652)
                      +++....+.|+++++...        ....+..       ....+..+++++.+..|+-..   ..+.|..+++......
T Consensus        42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-------h~~~V~~~~~~~~~~~l~s~s---~D~~v~lwd~~~~~~~  111 (343)
T 2xzm_R           42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-------HNHFVSDLALSQENCFAISSS---WDKTLRLWDLRTGTTY  111 (343)
T ss_dssp             EEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-------CSSCEEEEEECSSTTEEEEEE---TTSEEEEEETTSSCEE
T ss_pred             EEEEcCCCEEEEEECCcCCcccccccccchhcc-------CCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCcEE
Confidence            444445567777776532        1222222       235788999998777766443   5688888887643322


Q ss_pred             EEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEe--CCCCCceeEEEcCCC----------C
Q psy5768          76 TVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS--GGVDQPSALAVDPES----------G  143 (652)
Q Consensus        76 ~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~--~~~~~P~~iavd~~~----------g  143 (652)
                      ..+... ...+.    .+++.+.++.|+ +-+..+.|.+.++.+........  ........++..|..          .
T Consensus       112 ~~~~~h-~~~v~----~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  185 (343)
T 2xzm_R          112 KRFVGH-QSEVY----SVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP  185 (343)
T ss_dssp             EEEECC-CSCEE----EEEECSSTTEEE-EEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCC
T ss_pred             EEEcCC-CCcEE----EEEECCCCCEEE-EEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCC
Confidence            223333 44566    888876555454 44456788888887654333221  111234566666543          2


Q ss_pred             eEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         144 YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       144 ~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      +|.-..+  ...|..-+..+.....+. ..-...+.+++++.+..|.-...|
T Consensus       186 ~l~s~~~--d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~d  234 (343)
T 2xzm_R          186 YFASVGW--DGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGKD  234 (343)
T ss_dssp             EEEEEET--TSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEcC--CCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEcCC
Confidence            3333322  345555554332222221 112355677777766665555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=89.19  E-value=34  Score=38.78  Aligned_cols=430  Identities=11%  Similarity=0.085  Sum_probs=201.0

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC-
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-   81 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~-   81 (652)
                      |.|++  .+++.++|........+..... .  ....+..|..| .++.|++..  .  ..|++++........ +..+ 
T Consensus       101 lWigT--~~Gl~~yd~~~~~f~~~~~~~~-~--~~~~i~~i~~d-~~g~lwi~t--~--~gl~~~~~~~~~~~~-~~~~~  169 (795)
T 4a2l_A          101 VWIGT--RDGLSRYDEEKDIFQNFFYEKN-G--KHLQVNGIEEI-SPEQLLIST--P--EGLIMFDIKESKFID-DSFST  169 (795)
T ss_dssp             EEEEE--SSCEEEEETTTTEEEEECCEET-T--EECCCCEEEEE-ETTEEEEEE--T--TEEEEEETTTTEEEC-SSSCH
T ss_pred             EEEEe--CCchheeCCCCCeEEecccccc-C--CCceEEEEEEC-CCCCEEEEE--C--CceEEEECCCCEEEe-ccCCC
Confidence            44554  3567788776544444432110 0  01117778887 468888776  3  578888765332111 1111 


Q ss_pred             CcCC-ccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEe-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5768          82 KYPA-VTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARA  159 (652)
Q Consensus        82 ~~~~-p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~  159 (652)
                      .... +.    .|+.|. .++||+.- ..+-|.+.+........+.. ......+.|..|+ .|.|+...++  ..|.+.
T Consensus       170 ~~~~~i~----~i~~d~-~g~lwigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lwigt~~--~Gl~~~  240 (795)
T 4a2l_A          170 AMHKTIA----STLYRQ-GDQIYIGT-STDGLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIWVATEG--AGLFLI  240 (795)
T ss_dssp             HHHTCCE----EEEEEE-TTEEEEEE-SSSCEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEEEEEBS--SCEEEE
T ss_pred             CCCcceE----EEEECC-CCCEEEEE-CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEEEEECC--CCeEEE
Confidence            0112 55    788884 56676653 23357777765543332211 1124567888887 6787766432  357777


Q ss_pred             eCCCCCcEEEEeec-------ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeec
Q psy5768         160 GLDGKKQTILAQEI-------IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKD  232 (652)
Q Consensus       160 ~ldg~~~~~~~~~~-------~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~  232 (652)
                      +........+....       -.....|..|. .++|++.... |- ..+  +..+..               +..|...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~-Gl-~~~--~~~~~~---------------~~~~~~~  300 (795)
T 4a2l_A          241 NPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWIGTFN-DL-NIY--HEGTDS---------------FASYSSN  300 (795)
T ss_dssp             ETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEEEESS-CE-EEE--ETTTTE---------------EEEECCC
T ss_pred             eCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEEEeCC-hh-heE--cCCCCe---------------EEEEecC
Confidence            66543333322110       12355666664 3444443332 21 111  100000               0001000


Q ss_pred             cCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEee-ecceeEEecCCCCCCCCCceeeee--
Q psy5768         233 AQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSR-VNRIDSIHMTDKSDLNSPFESIRN--  309 (652)
Q Consensus       233 ~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~--  309 (652)
                      .   .++    ++      + ....-.+.+.            +.+.-|.+++ ...|..++. ....    +..+..  
T Consensus       301 ~---~~~----~~------l-~~~~i~~i~~------------D~~g~lWigt~~~Gl~~~~~-~~~~----~~~~~~~~  349 (795)
T 4a2l_A          301 P---VEN----GS------L-SQRSVRSIFM------------DSQGGMWLGTYFGGLNYYHP-IRNR----FKNIRNIP  349 (795)
T ss_dssp             T---TST----TS------C-SSSCEEEEEE------------CTTSCEEEEESSSCEEEECG-GGGS----SEEECCCT
T ss_pred             C---CCC----CC------C-CCCcEEEEEE------------eCCcCEEEEECCCCeEEeCC-Cccc----ceEEcCCC
Confidence            0   000    00      0 0001111111            1112233333 234444433 1111    011100  


Q ss_pred             -cc--ccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-e------c--cCceeeeEEEccCCEEEEEeCCC
Q psy5768         310 -ST--MMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-E------R--QGSVEGLAYEYVHNYLYWTCNND  377 (652)
Q Consensus       310 -~~--~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~------~--~~~~~glAvDw~~~~LYwtd~~~  377 (652)
                       ..  .-..+.++..|.. +.|++.. ..+-|.+++......+.+. .      +  ...+.+|+.|..++.|++. ...
T Consensus       350 ~~~~l~~~~V~~i~~d~~-g~lWiGt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig-t~~  426 (795)
T 4a2l_A          350 YKNSLSDNVVSCIVEDKD-KNLWIGT-NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIG-THA  426 (795)
T ss_dssp             TSSSCSCSSEEEEEECTT-SCEEEEE-SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEE-ETT
T ss_pred             CCCCCCCCeeEEEEECCC-CCEEEEE-CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEE-eCc
Confidence             00  0134667777764 4455543 3345777776543333222 1      1  2357789998654425544 334


Q ss_pred             CeEEEEEcCCCCCccEEEEEe----CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc----CC--C
Q psy5768         378 ATINKIDLDSPKAQRIVVVRL----GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT----DI--T  447 (652)
Q Consensus       378 ~~I~~~~~~~~~~~~~~~~~~----~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~----~l--~  447 (652)
                      +.|.+++..+..   ...+..    .......+|+.|+ .|.|++...+    .+.+.+.+....+.+...    .+  .
T Consensus       427 ~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~~----Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          427 GGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDG-EGNLWLGTLS----ALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             TEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECS-SSCEEEEESS----CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             CceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECC-CCCEEEEecC----ceeEEeCCCCeEEEccccccccccCCc
Confidence            567777764321   111211    0124678899998 6778877642    566666544322222111    11  2


Q ss_pred             CCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEec--C--CC--CceeEEEEeC-CEEEEEcCCCCeEEEEEccCC
Q psy5768         448 MPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK--I--SP--LHPFDMAVYG-EFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       448 ~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~--~--~~--~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      ....|..|. .++||.+..  +-+.+++.++... .+..  .  .+  ....+|..+. +.|+.+...  .+++.+..++
T Consensus       499 ~i~~i~~d~-~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~  572 (795)
T 4a2l_A          499 QITTLFRDS-HKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDK  572 (795)
T ss_dssp             CEEEEEECT-TCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTT
T ss_pred             eEEEEEECC-CCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCC
Confidence            346777884 466777664  4577877765433 2221  1  11  2456677664 566655432  6778776544

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=89.12  E-value=0.27  Score=32.58  Aligned_cols=34  Identities=29%  Similarity=0.642  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCcc--cceecCCCceEEEeCCccccCCCccc
Q psy5768         237 TNPCGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       237 ~n~C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .++|..  ..|.+  .|+....+|+|.|+.||.   |..|.
T Consensus         3 ~d~C~~--~pC~ngg~C~~~~~~~~C~C~~G~~---G~~Ce   38 (39)
T 1edm_B            3 GDQCES--NPCLNGGSCKDDINSYECWCPFGFE---GKNCE   38 (39)
T ss_dssp             CCTTTT--CCCCTTCEEEEETTEEEEECCTTCC---STTSC
T ss_pred             cccCCC--CCCCCCCEeEcCCCceEeECCCCCc---CCccC
Confidence            455653  24543  577777789999999983   55553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.04  E-value=19  Score=35.73  Aligned_cols=143  Identities=6%  Similarity=-0.042  Sum_probs=80.6

Q ss_pred             EEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE-EEEeC-C
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE-TVVSQ-K   81 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~-~v~~~-~   81 (652)
                      +++....+.|.++|++......+....     .-..+..++++|....|.-..   ..+.|+.+++...... ..+.. .
T Consensus       142 l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~~i~~~~~~pdg~~lasg~---~dg~i~iwd~~~~~~~~~~~~~~h  213 (343)
T 3lrv_A          142 FIWADNRGTIGFQSYEDDSQYIVHSAK-----SDVEYSSGVLHKDSLLLALYS---PDGILDVYNLSSPDQASSRFPVDE  213 (343)
T ss_dssp             EEEEETTCCEEEEESSSSCEEEEECCC-----SSCCCCEEEECTTSCEEEEEC---TTSCEEEEESSCTTSCCEECCCCT
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEecC-----CCCceEEEEECCCCCEEEEEc---CCCEEEEEECCCCCCCccEEeccC
Confidence            444446678888988765553333211     223588999998765555433   6788998988754432 23333 3


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeC--CCCCc---eeEEEcCCCCeEEEEecCCCCeE
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG--GVDQP---SALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~--~~~~P---~~iavd~~~g~lywtd~~~~~~I  156 (652)
                       ...+.    .|++...+..|..+.  .+.|.+.++........+..  .-..+   ..++++|...+|.-... ....|
T Consensus       214 -~~~v~----~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i  285 (343)
T 3lrv_A          214 -EAKIK----EVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-ESNSL  285 (343)
T ss_dssp             -TSCEE----EEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-TTTEE
T ss_pred             -CCCEE----EEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-CCCcE
Confidence             45566    888877555555554  34888888865432111110  00011   35999996656655333 13355


Q ss_pred             EEEeCC
Q psy5768         157 ARAGLD  162 (652)
Q Consensus       157 ~~~~ld  162 (652)
                      ...+++
T Consensus       286 ~v~~~~  291 (343)
T 3lrv_A          286 TIYKFD  291 (343)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            555554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=88.72  E-value=21  Score=35.80  Aligned_cols=148  Identities=7%  Similarity=-0.050  Sum_probs=87.3

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEcc-CCcEEEEeCCCCEEEEEE
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWI-AQNIYWSDPKENVIEVAR  116 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~-~~~lY~~d~~~~~I~v~~  116 (652)
                      ..+.++++.+.+..|+-..   ..+.|..+++........+... ...+.    .+++.+. .+++.++-+..+.|.+.+
T Consensus       155 ~~v~~~~~~~~~~~l~t~s---~D~~v~lwd~~~~~~~~~~~~h-~~~v~----~~~~~~~~~g~~l~sgs~Dg~v~~wd  226 (354)
T 2pbi_B          155 NYLSACSFTNSDMQILTAS---GDGTCALWDVESGQLLQSFHGH-GADVL----CLDLAPSETGNTFVSGGCDKKAMVWD  226 (354)
T ss_dssp             SCEEEEEECSSSSEEEEEE---TTSEEEEEETTTCCEEEEEECC-SSCEE----EEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCeEEEEEcCC-CCCeE----EEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            4678899998887877554   6688988988644333333333 33445    6666553 346666666678899988


Q ss_pred             cCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec--ccCceeEEEeccCCEEEEEeC
Q psy5768         117 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--IMPIKDITLDLKFFSAFYRNL  194 (652)
Q Consensus       117 ~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~--~~~p~gl~lD~~~~~ly~~d~  194 (652)
                      +........+..-......+++.|...+|.-..  ....|...++............  ......+++.+.+..|+....
T Consensus       227 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~  304 (354)
T 2pbi_B          227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN  304 (354)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence            865544444443345678899998554444333  2446666666544333222221  223456677666555554444


Q ss_pred             C
Q psy5768         195 S  195 (652)
Q Consensus       195 ~  195 (652)
                      +
T Consensus       305 d  305 (354)
T 2pbi_B          305 D  305 (354)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=88.59  E-value=0.47  Score=41.38  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCcc--ccccCCCCceeeeccCceee
Q psy5768         549 TPCRHLNGNCDD--ICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       549 ~~C~~~ng~Cs~--lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ++|......|.+  .|+..++ +|+|.|+.||..
T Consensus         6 deC~~~~~~C~~~g~C~~~~g-~~~C~C~~Gy~G   38 (135)
T 2vj3_A            6 DECSLGANPCEHAGKCINTLG-SFECQCLQGYTG   38 (135)
T ss_dssp             CTTTSSSCSSSTTCEEEECSS-SEEEECCTTEES
T ss_pred             ccccCCCCCCCCCCEeECCCC-CEEEECCCCCcC
Confidence            444433334543  5776655 699999999975

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.50  E-value=3.2  Score=45.58  Aligned_cols=110  Identities=12%  Similarity=0.069  Sum_probs=72.5

Q ss_pred             cccceEEEEEEEcCCCeEEEeecc---------------------cccEEEEeccCCcc-------eEEe----------
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQ---------------------KGTINSVFFNGSNH-------RVLL----------  352 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~---------------------~~~I~~~~~~g~~~-------~~i~----------  352 (652)
                      ..+..+.++.+++.+++||++-..                     .+.|+++..++...       +.++          
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            346678999999999999998542                     25688887553211       1111          


Q ss_pred             ------------eccCceeeeEEEccCCEEEEEeCC-----------CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEE
Q psy5768         353 ------------ERQGSVEGLAYEYVHNYLYWTCNN-----------DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDI  409 (652)
Q Consensus       353 ------------~~~~~~~glAvDw~~~~LYwtd~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iav  409 (652)
                                  ..+..|.+|+||..++.+--+|..           ++.+.+.....  +..+.++.........|+++
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~--g~~~rf~~~P~gaE~TG~~f  538 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--GEIRRFMVGPIGCEVTGISF  538 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT--CCEEEEEECCTTCEEEEEEE
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC--CeEEEEEeCCCCccCcCeeE
Confidence                        124579999999977644445643           23455554332  22445555556678889999


Q ss_pred             eCCCCEEEEEecC
Q psy5768         410 DSCDSRIYWTNWN  422 (652)
Q Consensus       410 dp~~g~Lywtd~~  422 (652)
                      .|....||+.-.+
T Consensus       539 spDg~tlfvniQH  551 (592)
T 3zwu_A          539 SPDQKTLFVGIQH  551 (592)
T ss_dssp             CTTSSEEEEEEES
T ss_pred             CCCCCEEEEEEEC
Confidence            9998899987654

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=88.43  E-value=0.35  Score=37.07  Aligned_cols=34  Identities=12%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCc--cccccCCCCceeee-ccCceeeccC
Q psy5768         549 TPCRHLNGNCD--DICKLDETGQVVCS-CFTGKVLMED  583 (652)
Q Consensus       549 ~~C~~~ng~Cs--~lCl~~~~~~~~C~-Cp~g~~l~~d  583 (652)
                      ++|......|.  ..|+.+++ +|+|. |+.||.+..+
T Consensus         4 dEC~~~~~~C~~~~~C~Nt~G-sy~C~~~~~g~~~~~~   40 (71)
T 2kl7_A            4 NECLTIPEACKGEMKCINHYG-GYLCLPRSAAVINDLH   40 (71)
T ss_dssp             CCTTCCCCSCTTEEEEEETTC-CEEEEETTSCCCSCCS
T ss_pred             ccccCCCCCCCCCCEeECCCC-CeEecccCCccccccc
Confidence            56665445674  47998877 69998 5567776655

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=88.41  E-value=32  Score=37.52  Aligned_cols=424  Identities=14%  Similarity=0.080  Sum_probs=205.6

Q ss_pred             CCCeEEEEecC-CCe--eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCc---ceEEEEEcCCCccEEEEeCCC
Q psy5768           9 TQSKIVVCNLE-GEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV---VTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         9 ~~~~I~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~---~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      ..+.|+++|+. ++.  ..++...       -..+.+|+|+|...+|.-+.  ...   ..|..++. |....++ ... 
T Consensus        79 ~d~~v~lWd~~~~~~~~~~~~~~~-------~~~v~~v~fs~dg~~l~~~~--~~~~~~~~v~~wd~-~~~~~~l-~gh-  146 (611)
T 1nr0_A           79 VHGNVRIWDTTQTTHILKTTIPVF-------SGPVKDISWDSESKRIAAVG--EGRERFGHVFLFDT-GTSNGNL-TGQ-  146 (611)
T ss_dssp             TTSEEEEEESSSTTCCEEEEEECS-------SSCEEEEEECTTSCEEEEEE--CCSSCSEEEEETTT-CCBCBCC-CCC-
T ss_pred             CCCCEEEeECCCCcceeeEeeccc-------CCceEEEEECCCCCEEEEEE--CCCCceeEEEEeeC-CCCccee-cCC-
Confidence            45678888874 222  2333322       24789999999988887665  332   24544442 3322222 223 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...+.    .+++.+....+..+-+..+.|...+.........+.+-......+++.|. |.++.|-. ....|..-++.
T Consensus       147 ~~~v~----~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s-~D~~i~lwd~~  220 (611)
T 1nr0_A          147 ARAMN----SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTG-GDGTIVLYNGV  220 (611)
T ss_dssp             SSCEE----EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEE-TTSCEEEEETT
T ss_pred             CCCce----EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-CCEEEEEE-CCCcEEEEECC
Confidence            34566    77777655555566666777887776543333333333356789999984 55555432 24456655543


Q ss_pred             -CCCcEEEEe------ecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCC
Q psy5768         163 -GKKQTILAQ------EIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQT  235 (652)
Q Consensus       163 -g~~~~~~~~------~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~  235 (652)
                       |.....+..      .--....++++.+.+.+|.-...| +..+.--..   ....             ++.+..    
T Consensus       221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-~~v~lWd~~---~~~~-------------~~~~~~----  279 (611)
T 1nr0_A          221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVA---TLKV-------------EKTIPV----  279 (611)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETT---TTEE-------------EEEEEC----
T ss_pred             CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-CeEEEEeCC---CCce-------------eeeecC----
Confidence             332222211      112356778887776666655555 222221100   0000             000000    


Q ss_pred             CCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccce
Q psy5768         236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKN  315 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~  315 (652)
                        ....      ..       ........+            ..++..+....++..++..+ .   +...+  ..+...
T Consensus       280 --~~~~------~~-------~~~~~~~~~------------~~l~s~s~d~~i~~~~~~~~-~---~~~~~--~gh~~~  326 (611)
T 1nr0_A          280 --GTRI------ED-------QQLGIIWTK------------QALVSISANGFINFVNPELG-S---IDQVR--YGHNKA  326 (611)
T ss_dssp             --CSSG------GG-------CEEEEEECS------------SCEEEEETTCCEEEEETTTT-E---EEEEE--CCCSSC
T ss_pred             --CCCc------cc-------eeEEEEEcC------------CEEEEEeCCCcEEEEeCCCC-C---cceEE--cCCCCC
Confidence              0000      00       000000011            11111222233443343111 0   11111  122345


Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc--
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ--  391 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~--  391 (652)
                      +.+++|.+..+.|+-+. ..+.|...++.......+.  .....+.++++.. .+.|+ +-+..+.+...++.+....  
T Consensus       327 v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~-s~s~d~~v~~w~~~~~~~~~~  403 (611)
T 1nr0_A          327 ITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLF-TVSWDDHLKVVPAGGSGVDSS  403 (611)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEE-EEETTTEEEEECSSSSSSCTT
T ss_pred             EEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccCCcceEEEEEECC-CCcEE-EEEcCCceEEeecCCcccccc
Confidence            78899988766665544 4577887777654332222  1223566777763 33443 4445566776665442111  


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ......  ....|.++++.|....++.+...    .|.... .|. ...+ . .-..+..+++.++++.|.-+. ..+.|
T Consensus       404 ~~~~~~--~~~~~~~~~~s~dg~~~~~~~~~----~v~~~~-~~~-~~~~-~-~~~~v~~va~spdg~~lasgs-~D~~v  472 (611)
T 1nr0_A          404 KAVANK--LSSQPLGLAVSADGDIAVAACYK----HIAIYS-HGK-LTEV-P-ISYNSSCVALSNDKQFVAVGG-QDSKV  472 (611)
T ss_dssp             SCCEEE--CSSCEEEEEECTTSSCEEEEESS----EEEEEE-TTE-EEEE-E-CSSCEEEEEECTTSCEEEEEE-TTSEE
T ss_pred             ceeeee--cCCCCcEEEEeCCCcEEEEEeCc----eEEEEe-CCc-eeee-e-cCCCceEEEEeCCCCEEEEeC-CCCeE
Confidence            011111  23578899999866566666322    332222 332 1121 1 123567899998877776654 45678


Q ss_pred             EEEecCCCceEEEec-CCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccC
Q psy5768         472 ERCDYDGTNRIVLSK-ISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~-~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      ...++++.....+.. .......+|++.  +.+|.-.. ..+.|..-+..+
T Consensus       473 ~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s-~d~~v~~w~~~~  522 (611)
T 1nr0_A          473 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVAN  522 (611)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGG
T ss_pred             EEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc-CCCCEEEEEcCC
Confidence            777877654322211 122345677775  33444333 444555444433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=88.37  E-value=31  Score=39.93  Aligned_cols=167  Identities=8%  Similarity=-0.075  Sum_probs=98.4

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEEEeCCCcCCc
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETVVSQKKYPAV   86 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v~~~~~~~~p   86 (652)
                      ...+.|++++..+........       .-..+.+|+|.+ +.+|.-..   ..+.|..+++.... ...+ . . -..+
T Consensus        36 s~Dg~I~lw~~~~~~~~~~~~-------~~~~V~~l~fsp-g~~L~S~s---~D~~v~lWd~~~~~~~~~~-~-~-~~~V  101 (902)
T 2oaj_A           36 TVTGEVHIYGQQQVEVVIKLE-------DRSAIKEMRFVK-GIYLVVIN---AKDTVYVLSLYSQKVLTTV-F-V-PGKI  101 (902)
T ss_dssp             ETTSEEEEECSTTCEEEEECS-------SCCCEEEEEEET-TTEEEEEE---TTCEEEEEETTTCSEEEEE-E-C-SSCE
T ss_pred             eCCCEEEEEeCCCcEEEEEcC-------CCCCEEEEEEcC-CCEEEEEE---CcCeEEEEECCCCcEEEEE-c-C-CCCE
Confidence            345788888887755433332       124789999999 56566554   56889999987543 3333 2 2 2456


Q ss_pred             cCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEE-----------eCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5768          87 TACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI-----------SGGVDQPSALAVDPESGYLFWSESGKIPL  155 (652)
Q Consensus        87 ~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~-----------~~~~~~P~~iavd~~~g~lywtd~~~~~~  155 (652)
                      .    .++++...+.|+... ..+.|.+.++++.......           ..-......++.+|..+.++.+-. ....
T Consensus       102 ~----~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-~dg~  175 (902)
T 2oaj_A          102 T----SIDTDASLDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVT  175 (902)
T ss_dssp             E----EEECCTTCSEEEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-SSCE
T ss_pred             E----EEEECCCCCEEEEEc-CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe-CCCc
Confidence            6    888887666666655 5778888898765432111           112245678999986544444432 2445


Q ss_pred             EEEEeCCCCCcEEEEeec------------------ccCceeEEEeccCCEEEEEeCC
Q psy5768         156 IARAGLDGKKQTILAQEI------------------IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       156 I~~~~ldg~~~~~~~~~~------------------~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      | .-++........+...                  -...+.+++.+.+.+|.-...|
T Consensus       176 v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D  232 (902)
T 2oaj_A          176 L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED  232 (902)
T ss_dssp             E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred             E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence            6 5565543322211110                  1345777887776666555555

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=88.27  E-value=0.28  Score=32.49  Aligned_cols=31  Identities=35%  Similarity=0.656  Sum_probs=20.5

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ..+..+||.. +|    .|+..+. +|+|.||.||..
T Consensus         4 d~C~~~pC~n-gg----~C~~~~~-~~~C~C~~G~~G   34 (39)
T 1edm_B            4 DQCESNPCLN-GG----SCKDDIN-SYECWCPFGFEG   34 (39)
T ss_dssp             CTTTTCCCCT-TC----EEEEETT-EEEEECCTTCCS
T ss_pred             ccCCCCCCCC-CC----EeEcCCC-ceEeECCCCCcC
Confidence            4556678863 23    3444444 799999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.00  E-value=34  Score=37.29  Aligned_cols=76  Identities=12%  Similarity=0.278  Sum_probs=48.4

Q ss_pred             ceEEEecCCCEEEEEeC------------------------------------CCCeEEEEecC-CCceEEEecCCCCce
Q psy5768         450 NALALDHQAEKLFWGDA------------------------------------RLDKIERCDYD-GTNRIVLSKISPLHP  492 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~------------------------------------~~~~I~~~~ld-G~~~~~l~~~~~~~p  492 (652)
                      .++++|+.+++||+...                                    ..+.|..+|+. |..+-.+-..  ..+
T Consensus       389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~  466 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAA  466 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCC
T ss_pred             CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCc
Confidence            46899999999998642                                    23567777765 4333332221  112


Q ss_pred             eE--EEEeCCEEEEEcCCCCeEEEEEccCCceEEEEec
Q psy5768         493 FD--MAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       493 ~g--lav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      .+  ++..++.||... ..+.|+.++..+|+.+-.+..
T Consensus       467 ~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          467 WGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred             cceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEeC
Confidence            22  344578888864 567899999989987665553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=87.95  E-value=20  Score=34.69  Aligned_cols=162  Identities=9%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             cceEEEEEEEcC-CCeEEEeecccccEEEEeccCCcc-------e--EEe-eccCceeeeEEEcc--CCEEEEEeCCCCe
Q psy5768         313 MKNIIELSYDYK-RKTLFYSDIQKGTINSVFFNGSNH-------R--VLL-ERQGSVEGLAYEYV--HNYLYWTCNNDAT  379 (652)
Q Consensus       313 ~~~~~~v~~D~~-~~~lywsd~~~~~I~~~~~~g~~~-------~--~i~-~~~~~~~glAvDw~--~~~LYwtd~~~~~  379 (652)
                      ...+.+++|.+. ++.++.+-...+.|...+++....       +  ..+ .....+.+|++.+.  ++.|+.+ ...+.
T Consensus        57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~  135 (351)
T 3f3f_A           57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL-GNDGI  135 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTCE
T ss_pred             CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe-cCCCc
Confidence            355788999885 345555555567788777765321       1  112 33456888999887  6555544 45678


Q ss_pred             EEEEEcCCCCCcc--E--EEEEe------CCCCCceEEEEeCC---CCEEEEEecCCCCCceEEEeecCCCceEEEEc--
Q psy5768         380 INKIDLDSPKAQR--I--VVVRL------GQHDKPRGIDIDSC---DSRIYWTNWNSHLPSIQRAFFSGFGTESIITT--  444 (652)
Q Consensus       380 I~~~~~~~~~~~~--~--~~~~~------~~~~~P~~Iavdp~---~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~--  444 (652)
                      |.+.++.......  .  .....      ........++.+|.   ..+|..+...   ..+............+...  
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~  212 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE---QAIIYQRGKDGKLHVAAKLPG  212 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT---EEEEEEECTTSCEEEEEECCC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC---CcEEEEccCCCceeeeeecCC
Confidence            8888875433110  0  00110      23345677888885   4444444332   1332222222222112211  


Q ss_pred             CCCCCceEEEecCCC---EEEEEeCCCCeEEEEecCC
Q psy5768         445 DITMPNALALDHQAE---KLFWGDARLDKIERCDYDG  478 (652)
Q Consensus       445 ~l~~P~glaiD~~~~---~LYw~D~~~~~I~~~~ldG  478 (652)
                      .-.....+++.+.+.   +++.+-...+.|...++..
T Consensus       213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            122456788887762   4444444455666666654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=87.83  E-value=35  Score=37.24  Aligned_cols=409  Identities=9%  Similarity=-0.015  Sum_probs=190.2

Q ss_pred             EEecCCCCeEEEEecCCC-eeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcC-CCccEEEEe--
Q psy5768           4 AVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMD-GTKRETVVS--   79 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~d-gs~~~~v~~--   79 (652)
                      +++....+.|.+++.... ...++..       .-..+.+|+|+|....|.-.   ...+.|..+++. |.....+..  
T Consensus       163 l~s~s~D~~v~lwd~~~~~~~~~l~~-------H~~~V~~v~fspdg~~las~---s~D~~i~lwd~~~g~~~~~~~~~~  232 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPFKFKSTFGE-------HTKFVHSVRYNPDGSLFAST---GGDGTIVLYNGVDGTKTGVFEDDS  232 (611)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECC-------CSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEECBCTT
T ss_pred             EEEEeCCCeEEEEECCCCeEeeeecc-------ccCceEEEEECCCCCEEEEE---ECCCcEEEEECCCCcEeeeecccc
Confidence            445555677888886543 3333432       23578999999976655544   367888888864 443333212  


Q ss_pred             ----CCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc-EEEEEeCCC--CCceeEEEcCCCCeEEEEecCC
Q psy5768          80 ----QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGV--DQPSALAVDPESGYLFWSESGK  152 (652)
Q Consensus        80 ----~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~-~~~l~~~~~--~~P~~iavd~~~g~lywtd~~~  152 (652)
                          .. ...+.    ++++...++ +..+-+..+.|.+-++.... ...+.....  .....++.+  ...|.-..  .
T Consensus       233 ~~~~~h-~~~V~----~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s--~  302 (611)
T 1nr0_A          233 LKNVAH-SGSVF----GLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSIS--A  302 (611)
T ss_dssp             SSSCSS-SSCEE----EEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEE--T
T ss_pred             cccccc-CCCEE----EEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc--CCEEEEEe--C
Confidence                12 33455    777776444 44555567788888876433 333221110  111222222  22222221  1


Q ss_pred             CCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeec
Q psy5768         153 IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKD  232 (652)
Q Consensus       153 ~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~  232 (652)
                      ...|...++...........--.....+++.+.+++|+-...|| ..+.--...+  . .             ..++.  
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~-~v~~Wd~~~~--~-~-------------~~~~~--  363 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG-HINSWDISTG--I-S-------------NRVFP--  363 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTC--C-E-------------EECSS--
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEECCCC--c-e-------------eeecc--
Confidence            23344434332222111111134567888888777777676663 3222111000  0 0             00000  


Q ss_pred             cCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEE-eeecceeEEecCCCCCCC-CCceeeeec
Q psy5768         233 AQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMY-SRVNRIDSIHMTDKSDLN-SPFESIRNS  310 (652)
Q Consensus       233 ~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~-s~~~~i~~i~l~~~~~~~-~p~~~~~~~  310 (652)
                                 .+   |     ...-.+....            +...|+. +....++..++. ..... ........ 
T Consensus       364 -----------~~---h-----~~~v~~~~~s------------~~~~l~s~s~d~~v~~w~~~-~~~~~~~~~~~~~~-  410 (611)
T 1nr0_A          364 -----------DV---H-----ATMITGIKTT------------SKGDLFTVSWDDHLKVVPAG-GSGVDSSKAVANKL-  410 (611)
T ss_dssp             -----------CS---C-----SSCEEEEEEC------------TTSCEEEEETTTEEEEECSS-SSSSCTTSCCEEEC-
T ss_pred             -----------cC---C-----cceEEEEEEC------------CCCcEEEEEcCCceEEeecC-Cccccccceeeeec-
Confidence                       00   0     0000000000            0011111 222333333331 11110 00000111 


Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA  390 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~  390 (652)
                        ...+.++++.+....++.+..  +.|...+ .+. ...+ .....+..+|+.+.++.|.-. +..++|...++.+.. 
T Consensus       411 --~~~~~~~~~s~dg~~~~~~~~--~~v~~~~-~~~-~~~~-~~~~~v~~va~spdg~~lasg-s~D~~v~lwd~~~~~-  481 (611)
T 1nr0_A          411 --SSQPLGLAVSADGDIAVAACY--KHIAIYS-HGK-LTEV-PISYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGAS-  481 (611)
T ss_dssp             --SSCEEEEEECTTSSCEEEEES--SEEEEEE-TTE-EEEE-ECSSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTE-
T ss_pred             --CCCCcEEEEeCCCcEEEEEeC--ceEEEEe-CCc-eeee-ecCCCceEEEEeCCCCEEEEe-CCCCeEEEEEccCCc-
Confidence              123456677666555655532  2333333 222 1222 223357889999887766544 556788887775421 


Q ss_pred             ccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC--CCceE-EEEcCCCCCceEEEecCCCEEEEEeCC
Q psy5768         391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG--FGTES-IITTDITMPNALALDHQAEKLFWGDAR  467 (652)
Q Consensus       391 ~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG--~~~~~-l~~~~l~~P~glaiD~~~~~LYw~D~~  467 (652)
                       ...+..........+|++.|...+|.-+....   .|....+..  ..... +....-.....+++.+++++|.-+. .
T Consensus       482 -~~~~~~~~h~~~v~~v~fspdg~~las~s~d~---~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs-~  556 (611)
T 1nr0_A          482 -VSEVKTIVHPAEITSVAFSNNGAFLVATDQSR---KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-L  556 (611)
T ss_dssp             -EEEEEEEECSSCEEEEEECTTSSEEEEEETTS---CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             -eeeeeccCCCCceEEEEECCCCCEEEEEcCCC---CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE-C
Confidence             11112223446788999999877776665442   444444442  11111 1110123456899998887776654 3


Q ss_pred             CCeEEEEecCCCc-eE-EEecCC-CCceeEEEEe
Q psy5768         468 LDKIERCDYDGTN-RI-VLSKIS-PLHPFDMAVY  498 (652)
Q Consensus       468 ~~~I~~~~ldG~~-~~-~l~~~~-~~~p~glav~  498 (652)
                      .+.|...+++... .. .+.... .....++++.
T Consensus       557 D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs  590 (611)
T 1nr0_A          557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL  590 (611)
T ss_dssp             TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred             CCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence            4567777777543 22 232222 2334556554

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=87.57  E-value=0.29  Score=35.10  Aligned_cols=23  Identities=30%  Similarity=0.756  Sum_probs=17.6

Q ss_pred             cce--ecCCCceEEEeCCccccCCCccc
Q psy5768         250 LCL--YNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       250 lC~--~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|+  ....+|+|.|+.||   .|..|.
T Consensus        19 ~C~~~~~~~~~~C~C~~G~---~G~~Ce   43 (53)
T 1egf_A           19 VCMHIESLDSYTCNCVIGY---SGDRCQ   43 (53)
T ss_dssp             EEEEESSSSCEEEECCTTC---CSSSSC
T ss_pred             EEEeeCCCCCEEEECCCCC---cCCcCC
Confidence            577  45558999999998   466776

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.39  E-value=24  Score=34.96  Aligned_cols=146  Identities=8%  Similarity=-0.025  Sum_probs=84.6

Q ss_pred             CCeeEEEEEC--CCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEE
Q psy5768          38 SKISSIAVWP--VKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA  115 (652)
Q Consensus        38 ~~~~~v~~d~--~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~  115 (652)
                      ..+..+++++  .++.+.-..   ..+.|..+++.......+........+.    .+++.. .+++..+-...+.|.+.
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~~i~----~~~~~p-dg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWAD---NRGTIGFQSYEDDSQYIVHSAKSDVEYS----SGVLHK-DSLLLALYSPDGILDVY  197 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEE---TTCCEEEEESSSSCEEEEECCCSSCCCC----EEEECT-TSCEEEEECTTSCEEEE
T ss_pred             CCEEEEEcCCCCCCCEEEEEe---CCCcEEEEECCCCcEEEEEecCCCCceE----EEEECC-CCCEEEEEcCCCEEEEE
Confidence            4689999998  766666554   5688988988755433333222122466    888876 45566665678899999


Q ss_pred             EcCCCcEE-EEEeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEee---cccCc--eeEEEeccCCE
Q psy5768         116 RLTGQYRY-VLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE---IIMPI--KDITLDLKFFS  188 (652)
Q Consensus       116 ~~dg~~~~-~l~~~-~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~---~~~~p--~gl~lD~~~~~  188 (652)
                      ++...... ..+.. -......+++.|...+|.-+..  . .|..-++........+..   .....  ..+++++.+..
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD--Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES--S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC--C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            98755432 22332 2356789999996555555542  2 677767654332111110   00111  34788877666


Q ss_pred             EEEEeC
Q psy5768         189 AFYRNL  194 (652)
Q Consensus       189 ly~~d~  194 (652)
                      |.....
T Consensus       275 l~~~s~  280 (343)
T 3lrv_A          275 MIAYSN  280 (343)
T ss_dssp             EEEEET
T ss_pred             EEEecC
Confidence            655444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=87.33  E-value=25  Score=35.03  Aligned_cols=141  Identities=14%  Similarity=0.101  Sum_probs=77.4

Q ss_pred             CCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCcc-EE--EEeCCCcCC
Q psy5768           9 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR-ET--VVSQKKYPA   85 (652)
Q Consensus         9 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~-~~--v~~~~~~~~   85 (652)
                      ..+.|.+++.+......+....+    .-..+.+|+++|..+.|.-..   ..+.|..++++.... +.  .+... ...
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~h-~~~  152 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEG----HENEVKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSVLNSH-TQD  152 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECC----CSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEEECCC-CSC
T ss_pred             CCCcEEEEEccCCCeEEEEEccC----CCCCceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEEecCc-CCC
Confidence            44556666665432222211111    235789999999877776554   567888888765432 22  22333 344


Q ss_pred             ccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcE--EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          86 VTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        86 p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~--~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      +.    .+++....+ +..+-+..+.|.+.+......  ...+.+-......++++|...+|.-......-+|+.....
T Consensus       153 v~----~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          153 VK----HVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             EE----EEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             eE----EEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            56    777766444 444444566777777654422  2223333456789999996555554443323345554443

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=87.07  E-value=0.17  Score=44.67  Aligned_cols=42  Identities=17%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCc--ccceecCCCceEEEeCCc-cccCCCccccc
Q psy5768         236 GTNPCGVNNGGCA--ELCLYNGVSAVCACAHGV-VAQDGKSCSEY  277 (652)
Q Consensus       236 ~~n~C~~~ng~Cs--~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~  277 (652)
                      ++++|......|.  +.|+..+++|+|.|+.|| +..+++.|...
T Consensus        95 dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~  139 (143)
T 2bou_A           95 DVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD  139 (143)
T ss_dssp             ECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTT
T ss_pred             CccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccC
Confidence            4677776556776  689988889999999998 44577888643

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=86.90  E-value=0.39  Score=48.60  Aligned_cols=39  Identities=26%  Similarity=0.578  Sum_probs=21.1

Q ss_pred             CCCCCC-CCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHL-NGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~-ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|... ++.|.+.|+..++ +|+|.|+.||.+..+ ++|.+
T Consensus        44 ~eC~~~~~~~C~~~C~~~~g-~~~C~C~~g~~~~~~~~~C~~   84 (317)
T 3h5c_B           44 NECHPERTDGCQHFCLPGQE-SYTCSCAQGYRLGEDHKQCVP   84 (317)
T ss_dssp             SSCCTTCTTSCSSEEECCSS-SCEEECCTTEECCTTSSCCEE
T ss_pred             ccCCCCCCCCCcCccccCCC-eeEEecccccccccccccccc
Confidence            455431 2456566665444 466666666666555 55554

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.62  E-value=5.2  Score=43.93  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             CCCCeeEEEEECCCCEEEEEeccCC-------------------cceEEEEEcCCCc-------cEEEEeCC--------
Q psy5768          36 TLSKISSIAVWPVKGKMFWSNVTKQ-------------------VVTIEMAFMDGTK-------RETVVSQK--------   81 (652)
Q Consensus        36 ~~~~~~~v~~d~~~~~lyw~d~~~~-------------------~~~I~~~~~dgs~-------~~~v~~~~--------   81 (652)
                      .+.++.++.++|.+++||++-.+..                   .+.|+|+..++..       .+.++..+        
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            5789999999999999999862111                   2579999876431       22333211        


Q ss_pred             ------------CcCCccCCCCcEEEEccCCcEEE-EeCC-----------CCEEEEEEcC-CCcEEEEEeCCCCCceeE
Q psy5768          82 ------------KYPAVTACNLHIAVDWIAQNIYW-SDPK-----------ENVIEVARLT-GQYRYVLISGGVDQPSAL  136 (652)
Q Consensus        82 ------------~~~~p~~~~~~lavDw~~~~lY~-~d~~-----------~~~I~v~~~d-g~~~~~l~~~~~~~P~~i  136 (652)
                                  .+..|.    .|+||.. ++|++ +|..           .+.+.+.+.+ |+.++.+....-....++
T Consensus       462 ~~~~~~~~~~~~~f~~PD----NL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~  536 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPD----GLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI  536 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEE----EEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEE
T ss_pred             ccccccccCCCCCccCCc----ceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCe
Confidence                        155688    9999985 45665 5542           3456666665 555554443333567788


Q ss_pred             EEcCCCCeEEEEe
Q psy5768         137 AVDPESGYLFWSE  149 (652)
Q Consensus       137 avd~~~g~lywtd  149 (652)
                      ++.|....||+.=
T Consensus       537 ~fspDg~tlfvni  549 (592)
T 3zwu_A          537 SFSPDQKTLFVGI  549 (592)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             eECCCCCEEEEEE
Confidence            8888777888764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=86.51  E-value=26  Score=34.38  Aligned_cols=117  Identities=8%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             eEEEEEEEc---CCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEc---cCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         315 NIIELSYDY---KRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEY---VHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       315 ~~~~v~~D~---~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw---~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      .+.++++..   ..+.++++-...+.|...++..............+..+++++   .++.|+. -...+.|.+.++...
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCC
Confidence            455666432   234444554456788888877654433334445788889888   5555554 456688888776542


Q ss_pred             CCccEE-E-EEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         389 KAQRIV-V-VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       389 ~~~~~~-~-~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      ...... . ..........+++++|....++++-....  .|...++.
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  290 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG--GLHLWKYE  290 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS--EEEEEEEE
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC--cEEEeecC
Confidence            211111 1 11134567788999996664555544332  44444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=86.15  E-value=30  Score=34.85  Aligned_cols=195  Identities=6%  Similarity=0.022  Sum_probs=109.7

Q ss_pred             EEEEEEEcCCCeEEEeec-ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEE
Q psy5768         316 IIELSYDYKRKTLFYSDI-QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV  394 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~-~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~  394 (652)
                      +..++|.+..+.|..+.. ..+.|...++........+..-..+.+|++.+.++.|..+.  .+.+.++.....   ...
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~---~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTG---SCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTC---CEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--ceeEEEEEeccC---cce
Confidence            446778777777766543 34667777766543333334445688999999888776553  345666665432   122


Q ss_pred             EEEe--CCCCCceEEEEeCCCCEEEEEecCCCC-CceEEEeecCCCceEEE----EcCCCCCceEEEecCCCEEEEEeCC
Q psy5768         395 VVRL--GQHDKPRGIDIDSCDSRIYWTNWNSHL-PSIQRAFFSGFGTESII----TTDITMPNALALDHQAEKLFWGDAR  467 (652)
Q Consensus       395 ~~~~--~~~~~P~~Iavdp~~g~Lywtd~~~~~-~~I~r~~ldG~~~~~l~----~~~l~~P~glaiD~~~~~LYw~D~~  467 (652)
                      ....  ......+++++.|...+|..+...... ..|....+.......+.    .........|++.++++.|..+. .
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-N  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-T
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-C
Confidence            1111  122346789999976666655433221 13444444433322221    12233457889998887776654 3


Q ss_pred             CCeEEEEecCCCc-eEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEE
Q psy5768         468 LDKIERCDYDGTN-RIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRAN  516 (652)
Q Consensus       468 ~~~I~~~~ldG~~-~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~  516 (652)
                      .+.|...|+.... .+.+.........+|++- ++.+..|-...++|...+
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            4578888886443 334444333456788876 345555555566655444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=85.26  E-value=30  Score=33.96  Aligned_cols=117  Identities=6%  Similarity=-0.012  Sum_probs=73.5

Q ss_pred             CCCeeEEEEECCC--CEEEEEeccCCcceEEEEEcCC--CccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEE
Q psy5768          37 LSKISSIAVWPVK--GKMFWSNVTKQVVTIEMAFMDG--TKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVI  112 (652)
Q Consensus        37 ~~~~~~v~~d~~~--~~lyw~d~~~~~~~I~~~~~dg--s~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I  112 (652)
                      -..+..|++++..  +.++++-  ...+.|+.++++.  ......+... ...+.    .+++....+.|+ +-+..+.|
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~----~~~~~~~~~~l~-s~~~dg~v  110 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAG--SWANDVRCWEVQDSGQTIPKAQQMH-TGPVL----DVCWSDDGSKVF-TASCDKTA  110 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEE--ETTSEEEEEEECTTSCEEEEEEEEC-SSCEE----EEEECTTSSEEE-EEETTSEE
T ss_pred             CCceEEEEEcCCCCCceEEEEE--CCCCcEEEEEcCCCCceeEEEeccc-cCCEE----EEEECcCCCEEE-EEcCCCcE
Confidence            3688999999986  4544444  3567888888874  3332344444 45577    888877444454 44467889


Q ss_pred             EEEEcCCCcEEEEEeCCCCCceeEEE--cCCCCeEEEEecCCCCeEEEEeCCCC
Q psy5768         113 EVARLTGQYRYVLISGGVDQPSALAV--DPESGYLFWSESGKIPLIARAGLDGK  164 (652)
Q Consensus       113 ~v~~~dg~~~~~l~~~~~~~P~~iav--d~~~g~lywtd~~~~~~I~~~~ldg~  164 (652)
                      .+.+++......+.. .......+++  +| +|.++.+-. ....|...++...
T Consensus       111 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~l~~~~-~dg~i~vwd~~~~  161 (368)
T 3mmy_A          111 KMWDLSSNQAIQIAQ-HDAPVKTIHWIKAP-NYSCVMTGS-WDKTLKFWDTRSS  161 (368)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEEEECS-SCEEEEEEE-TTSEEEEECSSCS
T ss_pred             EEEEcCCCCceeecc-ccCceEEEEEEeCC-CCCEEEEcc-CCCcEEEEECCCC
Confidence            999988765554443 2356788888  66 444444432 2456777776543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=84.98  E-value=0.75  Score=31.55  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=16.8

Q ss_pred             CCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       550 ~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ||.. .|.|..   ....++|+|.||.||..
T Consensus        10 pC~n-gg~C~~---~~~~~~~~C~C~~G~~G   36 (45)
T 1a3p_A           10 YCLN-GGVXMH---IESLDSYTCNCVIGYSG   36 (45)
T ss_dssp             CCSS-SCEEEE---CTTTSSEEEECCTTEET
T ss_pred             CCCC-CCEEEe---ecCCCCEEEEcCCCCcC
Confidence            8873 233431   12334799999999964

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=84.86  E-value=0.33  Score=41.38  Aligned_cols=22  Identities=32%  Similarity=0.736  Sum_probs=10.1

Q ss_pred             CCccccccCCCCceeeeccCceee
Q psy5768         557 NCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       557 ~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      .|.+.|+. . ++|+|.|+.||.+
T Consensus        50 ~C~~~C~~-~-~~y~C~C~~Gy~~   71 (118)
T 1dx5_I           50 ACPADCDP-N-TQASCECPEGYIL   71 (118)
T ss_dssp             EEECEECT-T-STTCEECCTTEEE
T ss_pred             CCCCcccC-C-CCeEeECCCCccC
Confidence            34444443 1 2455555555554

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=84.64  E-value=0.55  Score=33.96  Aligned_cols=40  Identities=20%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCCCCCcccc-ccCCCCceeeeccCceeeccCCcccC
Q psy5768         544 DACAKTPCRHLNGNCDDIC-KLDETGQVVCSCFTGKVLMEDNRSCT  588 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lC-l~~~~~~~~C~Cp~g~~l~~d~~C~~  588 (652)
                      ..+..+||.. .|.|..+= +... +.|+|.||.||..   .+|..
T Consensus         9 ~eC~s~pC~N-gGtC~~~~~~d~~-~~y~C~C~~g~~G---~~CE~   49 (55)
T 3u7u_G            9 AEKEKTFCVN-GGECFMVKDLSNP-SRYLCKCPNEFTG---DRCQN   49 (55)
T ss_dssp             CSTTTTTSCT-TCEEEEECCC--C-CCEEEEECTTEES---TTSCE
T ss_pred             CCCcCCCCCC-CCCcCCCCccCCC-CCEeEeCCCCCcC---CCcCc
Confidence            5677899973 34464321 2222 3799999999965   45653

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=84.46  E-value=0.53  Score=34.01  Aligned_cols=36  Identities=25%  Similarity=0.548  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCCcccc-eecCCCceEEEeCCccccCCCccc
Q psy5768         236 GTNPCGVNNGGCAELC-LYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC-~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      ..+||.. .|.|..+= +....+|+|.|+.||   .|+.|.
T Consensus        12 ~s~pC~N-gGtC~~~~~~d~~~~y~C~C~~g~---~G~~CE   48 (55)
T 3u7u_G           12 EKTFCVN-GGECFMVKDLSNPSRYLCKCPNEF---TGDRCQ   48 (55)
T ss_dssp             TTTTSCT-TCEEEEECCC--CCCEEEEECTTE---ESTTSC
T ss_pred             cCCCCCC-CCCcCCCCccCCCCCEeEeCCCCC---cCCCcC
Confidence            4566652 35554321 233458999999998   466775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=84.26  E-value=40  Score=34.63  Aligned_cols=194  Identities=13%  Similarity=0.071  Sum_probs=106.8

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccE
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI  393 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~  393 (652)
                      .+.++++|   +..+++-...+.|...++........+ .....+..|++  .+ ++.++-+..+.|.+.++....    
T Consensus       135 ~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~----  204 (435)
T 1p22_A          135 GVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGE----  204 (435)
T ss_dssp             CEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCC----
T ss_pred             cEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCc----
Confidence            35666664   444555455677888877644333333 23335555555  34 455566667889988876432    


Q ss_pred             EEEEe-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEE---EEcCCCCCceEEEecCCCEEEEEeCCCC
Q psy5768         394 VVVRL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESI---ITTDITMPNALALDHQAEKLFWGDARLD  469 (652)
Q Consensus       394 ~~~~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l---~~~~l~~P~glaiD~~~~~LYw~D~~~~  469 (652)
                      .+... .......+++.++  ++|+.....   +.|...++.......+   ....-.....+++|  ++.|+.+. ..+
T Consensus       205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg  276 (435)
T 1p22_A          205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKD---RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS-GDR  276 (435)
T ss_dssp             EEEEECCCCSCEEEEECCT--TEEEEEETT---SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             EEEEEcCCCCcEEEEEEcC--CEEEEeeCC---CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe-CCC
Confidence            22222 2334556677764  455544432   2566556654433221   11122234566664  66666654 456


Q ss_pred             eEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         470 KIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       470 ~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .|...++........+.........+++.+++|+... ..+.|...+..+|+....+.
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS-SDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEe-CCCeEEEEECCCCCEEEEEe
Confidence            7888888765544444433345566777666555544 55667777777776655554

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=84.17  E-value=0.65  Score=32.16  Aligned_cols=23  Identities=30%  Similarity=0.787  Sum_probs=16.1

Q ss_pred             cceecC--CCceEEEeCCccccCCCccc
Q psy5768         250 LCLYNG--VSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       250 lC~~~~--~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|....  ++|+|.|+.||   .|..|.
T Consensus        18 ~C~~~~~~~~~~C~C~~Gy---tG~~Ce   42 (46)
T 1k36_A           18 QCIYLVDMSQNYCRCEVGY---TGVRCE   42 (46)
T ss_dssp             EEEEETTTTEEEEEECTTC---SSTTSC
T ss_pred             EeeccCCCCCEEEECCCCC---ccCCCC
Confidence            455432  47999999999   466665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=84.11  E-value=34  Score=33.59  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=90.1

Q ss_pred             cceEEEEEEEcCC--CeEEEeecccccEEEEeccCCcce--EEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         313 MKNIIELSYDYKR--KTLFYSDIQKGTINSVFFNGSNHR--VLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       313 ~~~~~~v~~D~~~--~~lywsd~~~~~I~~~~~~g~~~~--~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      -..+.+++|.+..  +.++++-...+.|...+++.....  ..+ .....+..|++.+.++.|+.+ ...+.|.+.++..
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~  117 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA-SCDKTAKMWDLSS  117 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE-cCCCcEEEEEcCC
Confidence            3567899999886  566666555677887777642222  223 445578899999877777644 4568888888865


Q ss_pred             CCCccEEEEEeCCCCCceEEEE--eCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEe
Q psy5768         388 PKAQRIVVVRLGQHDKPRGIDI--DSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGD  465 (652)
Q Consensus       388 ~~~~~~~~~~~~~~~~P~~Iav--dp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D  465 (652)
                      .    +.+..........++++  +|...+|+.+...   +.|...++........+...   ...++++.....++.+.
T Consensus       118 ~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          118 N----QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD---KTLKFWDTRSSNPMMVLQLP---ERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             T----EEEEEEECSSCEEEEEEEECSSCEEEEEEETT---SEEEEECSSCSSCSEEEECS---SCEEEEEEETTEEEEEE
T ss_pred             C----CceeeccccCceEEEEEEeCCCCCEEEEccCC---CcEEEEECCCCcEEEEEecC---CCceEEEecCCeeEEEe
Confidence            3    22223334567788998  7754445444332   25666665443332222211   23445555555555554


Q ss_pred             CCCCeEEEEecCCC
Q psy5768         466 ARLDKIERCDYDGT  479 (652)
Q Consensus       466 ~~~~~I~~~~ldG~  479 (652)
                      . .+.+...+++..
T Consensus       188 ~-~~~i~~~~~~~~  200 (368)
T 3mmy_A          188 A-ERGLIVYQLENQ  200 (368)
T ss_dssp             G-GGCEEEEECSSS
T ss_pred             C-CCcEEEEEeccc
Confidence            3 334555555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=83.99  E-value=31  Score=33.03  Aligned_cols=189  Identities=11%  Similarity=-0.016  Sum_probs=98.9

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV  395 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~  395 (652)
                      +.+++++  .+ ++++-...+.|...+ .+.....+......+..+++....++++.+-...+.|...+...    ....
T Consensus       107 i~~~~~~--~~-~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~  178 (313)
T 3odt_A          107 VCSLSFQ--DG-VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----VIKT  178 (313)
T ss_dssp             EEEEEEE--TT-EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----EEEE
T ss_pred             EEEEEec--CC-EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----eEEE
Confidence            4455553  22 333333345555555 22222222233446677777764455555666677888777321    1222


Q ss_pred             EEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEe
Q psy5768         396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCD  475 (652)
Q Consensus       396 ~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~  475 (652)
                      +..........+++.|. +.++.....   +.|...++........+...-.....+++.+.+ +|+-+ ...+.|...+
T Consensus       179 ~~~~~~~~i~~~~~~~~-~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~dg~v~iwd  252 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVDD-GHFISCSND---GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC-GEDRTVRIWS  252 (313)
T ss_dssp             ECSSCSSCEEEEEEEET-TEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE-ETTSEEEEEC
T ss_pred             EeccCcccEEEEEEcCC-CeEEEccCC---CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE-ecCCEEEEEE
Confidence            22224567788999985 444443332   366666665433333333233456788888776 45443 4567888888


Q ss_pred             cCCCceEEEecCCCCceeEEEEeCC-EEEEEcCCCCeEEEEEccC
Q psy5768         476 YDGTNRIVLSKISPLHPFDMAVYGE-FIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       476 ldG~~~~~l~~~~~~~p~glav~~~-~lYwtd~~~~~I~~~~k~~  519 (652)
                      +........+........++++..+ .+ .+-...+.|..-+..+
T Consensus       253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          253 KENGSLKQVITLPAISIWSVDCMSNGDI-IVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             TTTCCEEEEEECSSSCEEEEEECTTSCE-EEEETTSCEEEEESCG
T ss_pred             CCCCceeEEEeccCceEEEEEEccCCCE-EEEeCCCcEEEEeCCC
Confidence            8665544444433345567776533 33 3333445555444433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=83.97  E-value=19  Score=37.59  Aligned_cols=124  Identities=10%  Similarity=-0.023  Sum_probs=76.2

Q ss_pred             ceeeeEEEccCCEEEE---EeCCCCeEEEEEcCCC-----CC-c-cEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCCC
Q psy5768         357 SVEGLAYEYVHNYLYW---TCNNDATINKIDLDSP-----KA-Q-RIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSHL  425 (652)
Q Consensus       357 ~~~glAvDw~~~~LYw---td~~~~~I~~~~~~~~-----~~-~-~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~~  425 (652)
                      .+..|+++..++.|+.   +-+..+.|.+.++...     .. . ...+.... ......+|+.+|..+.++.+-.... 
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg-  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG-  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS-
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC-
Confidence            5889999999988887   5555677888776432     00 0 01111111 2356889999998666666544332 


Q ss_pred             CceEEEeecCCCceEEEEcC-CCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEE
Q psy5768         426 PSIQRAFFSGFGTESIITTD-ITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVL  484 (652)
Q Consensus       426 ~~I~r~~ldG~~~~~l~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l  484 (652)
                       .|...++..... ...... -..+..++..+.++.|+.+. ..+.|...+.+|...+.+
T Consensus       173 -~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~  229 (434)
T 2oit_A          173 -SIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVI  229 (434)
T ss_dssp             -CEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEE
T ss_pred             -eEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccc
Confidence             555555544321 211111 23567899998888888765 456788888886555544

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=83.64  E-value=0.37  Score=44.60  Aligned_cols=60  Identities=27%  Similarity=0.495  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceeecc-C-CcccCc-ccccCCCceee-cc-CeecCC
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLME-D-NRSCTI-NTVCSEHDFKC-SD-GMCIPF  608 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~-d-~~C~~~-~~~C~~~~f~C-~~-g~Ci~~  608 (652)
                      ..+..+||.. ++.|.+.|+..++ +|+|.|+.||.+.. + ++|... ...|..   .| .+ +.|+..
T Consensus        92 d~C~~~~C~~-~g~C~~~~~~~~g-~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~---~C~~~~~~C~n~  156 (186)
T 1z1y_A           92 DVCQYXNCGE-SGECIVEYLSEIQ-SAGCSCAIGXVPNPEDEXXCTXTGETACQL---XCNTDNEVCXNV  156 (186)
T ss_dssp             GGGTTCCCCT-TEEEEEEEETTEE-EEEEEECTEEEEETTTTTEEEEEECCCCCC---CCCTTTEEEEEE
T ss_pred             CcCcCCCCCC-CCEEeeCCcCCCC-CceEECCCCCcccCCCCCcceEcCCCcccc---cccccCcceecC
Confidence            3455678863 5678777766554 69999999999865 5 788753 245652   67 43 477753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=83.29  E-value=35  Score=33.16  Aligned_cols=206  Identities=9%  Similarity=-0.013  Sum_probs=111.5

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcc--e---EEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH--R---VLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~--~---~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ..+.+|+|.+..+.++.+-...+.|..-++.....  .   ..+ .....+..+++.+.++.|+.. ...+.|...+...
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~~  117 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG-SWDGTLRLWDLTT  117 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-cccccceEEeecc
Confidence            55788999988777777766667777777654321  1   111 224568889999887777654 4457777777654


Q ss_pred             CCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC-CCCCceEEEecCCCE-EEEEe
Q psy5768         388 PKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD-ITMPNALALDHQAEK-LFWGD  465 (652)
Q Consensus       388 ~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~-l~~P~glaiD~~~~~-LYw~D  465 (652)
                      .   ...............+...+...+|+.....   ..+...++.+.....+.... ......+++...... ++.+-
T Consensus       118 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          118 G---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             T---EEEEEEECCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             c---ceeeeecCCCCceeEEEEeecCccceeecCC---CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence            2   2222222344566667777766666554432   13443444333222221111 123345566554433 33333


Q ss_pred             CCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEEEEEccCCceEEEE
Q psy5768         466 ARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVLRANKYTGEEVYTL  526 (652)
Q Consensus       466 ~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~~~~k~~g~~~~~~  526 (652)
                      ...+.|...++.................+|++.. +.++.+-...+.|..-+..+++....+
T Consensus       192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence            3445677777776554444443323456777752 334444445566666666555444333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=83.08  E-value=45  Score=34.29  Aligned_cols=135  Identities=10%  Similarity=0.051  Sum_probs=78.8

Q ss_pred             EEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCC
Q psy5768           4 AVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKK   82 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~   82 (652)
                      +++....+.|.++++. |+....+..       .-..+.+++++  ++.|+...   ..+.|..+++........+... 
T Consensus       132 l~sg~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~--~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~h-  198 (445)
T 2ovr_B          132 IVSGSDDNTLKVWSAVTGKCLRTLVG-------HTGGVWSSQMR--DNIIISGS---TDRTLKVWNAETGECIHTLYGH-  198 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECCC-------CSSCEEEEEEE--TTEEEEEE---TTSCEEEEETTTTEEEEEECCC-
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcC-------CCCCEEEEEec--CCEEEEEe---CCCeEEEEECCcCcEEEEECCC-
Confidence            3444457788899876 444444433       23567888887  45666554   6788999998755333333333 


Q ss_pred             cCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768          83 YPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus        83 ~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      ...+.    .++++  .+ ..++-+..+.|.+.++........+.........++.|  ..+|+....  ...|...++.
T Consensus       199 ~~~v~----~~~~~--~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~--dg~i~iwd~~  267 (445)
T 2ovr_B          199 TSTVR----CMHLH--EK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY--DFMVKVWDPE  267 (445)
T ss_dssp             SSCEE----EEEEE--TT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEET--TSCEEEEEGG
T ss_pred             CCcEE----EEEec--CC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcC--CCEEEEEECC
Confidence            34455    66664  44 44555567889999887554444444434556666663  344544432  3456555554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=82.63  E-value=47  Score=34.13  Aligned_cols=190  Identities=15%  Similarity=0.088  Sum_probs=101.1

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.++++|   +.++++-...+.|...++........+ .....+..|+++  .+ ++++-+..+.|.+.++.......
T Consensus       174 ~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~  247 (435)
T 1p22_A          174 GSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDIT  247 (435)
T ss_dssp             SCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCE
T ss_pred             CcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCce
Confidence            456777773   445555556688888887644332222 333455566654  44 44555667889888886533211


Q ss_pred             EEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEE
Q psy5768         393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIE  472 (652)
Q Consensus       393 ~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  472 (652)
                      .............+++.+  ..+|+.....   +.|...++........+.........++.+  ++.|+.+ ...+.|.
T Consensus       248 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g-~~dg~i~  319 (435)
T 1p22_A          248 LRRVLVGHRAAVNVVDFD--DKYIVSASGD---RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG-SSDNTIR  319 (435)
T ss_dssp             EEEEECCCSSCEEEEEEE--TTEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE-ETTSCEE
T ss_pred             eeeEecCCCCcEEEEEeC--CCEEEEEeCC---CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEE-eCCCeEE
Confidence            111222333455667664  3556555433   256655555433322222222344566665  4555544 4556788


Q ss_pred             EEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEcc
Q psy5768         473 RCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKY  518 (652)
Q Consensus       473 ~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~  518 (652)
                      ..++........+........++++.+.+|+... ..+.|...+..
T Consensus       320 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~  364 (435)
T 1p22_A          320 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA-YDGKIKVWDLV  364 (435)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE-TTSCEEEEEHH
T ss_pred             EEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEe-CCCcEEEEECC
Confidence            8888754443334433344567777555554443 44556555543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=82.62  E-value=46  Score=34.01  Aligned_cols=209  Identities=11%  Similarity=0.005  Sum_probs=107.0

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEecc----CCcceEEe-e-----------ccCceeeeEEEc-cCCEEEEEeCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFN----GSNHRVLL-E-----------RQGSVEGLAYEY-VHNYLYWTCNN  376 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~----g~~~~~i~-~-----------~~~~~~glAvDw-~~~~LYwtd~~  376 (652)
                      ..+.+++|.+..+.|+... ..+.|...+++    |....... .           ....+..++.-+ ..+.+..+-..
T Consensus       112 ~~v~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSS-KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCEEEEEEeCCCCEEEEEe-CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            4578889987555555443 44666666552    22111111 0           111222232111 12455556666


Q ss_pred             CCeEEEEEcCCCCCccEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-cCCCCCceEEE
Q psy5768         377 DATINKIDLDSPKAQRIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-TDITMPNALAL  454 (652)
Q Consensus       377 ~~~I~~~~~~~~~~~~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-~~l~~P~glai  454 (652)
                      .+.|.+.++....  ....+... ......+++++|...+|+.....   +.|...++........+. ..-.....|++
T Consensus       191 d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          191 LSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTR---GIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             TSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETT---SCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             CCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCC---CeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            7889988886532  22222211 24678999999976666655543   245555554321111111 11112235544


Q ss_pred             ecC---CCEEEEEeCCCCeEEEEecCCCc-eEEEecCC-------------------------CCceeEEEEeCCEEEEE
Q psy5768         455 DHQ---AEKLFWGDARLDKIERCDYDGTN-RIVLSKIS-------------------------PLHPFDMAVYGEFIFWT  505 (652)
Q Consensus       455 D~~---~~~LYw~D~~~~~I~~~~ldG~~-~~~l~~~~-------------------------~~~p~glav~~~~lYwt  505 (652)
                      .+.   .+++..+-...+.|...++.... .+.+....                         .....+|++.++.++.+
T Consensus       266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s  345 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT  345 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEE
T ss_pred             ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEe
Confidence            432   23344444455678888886433 33332110                         01134567776666677


Q ss_pred             cCCCCeEEEEEccCCceEEEEec
Q psy5768         506 DWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       506 d~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      -...+.|..-+..+++....+..
T Consensus       346 ~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          346 DEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             EGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCCeEEEEECCCcccceEEec
Confidence            66777888888777776666553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=82.49  E-value=37  Score=32.93  Aligned_cols=198  Identities=7%  Similarity=-0.075  Sum_probs=98.6

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCcc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR  392 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~  392 (652)
                      ..+.+++|.+....|+.... .+.|.............. .....+..+++...++.|+- -...+.+.+.++.+.   .
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~s~d~~~~~~d~~~~---~  161 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSW-DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGV---C  161 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTSC---E
T ss_pred             CCEEEEEECCCCCEEEEEcc-cccceEEeecccceeeeecCCCCceeEEEEeecCcccee-ecCCCeEEEEEeCCC---c
Confidence            45778889887666655543 466776666554333222 33345556666666665544 344566666665432   2


Q ss_pred             EEEEEe-CCCCCceEEEEeCCCCE-EEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe
Q psy5768         393 IVVVRL-GQHDKPRGIDIDSCDSR-IYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDK  470 (652)
Q Consensus       393 ~~~~~~-~~~~~P~~Iavdp~~g~-Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~  470 (652)
                      ...... ........+++.+.... ++.+-...  ..|...++............-...+.|++.+.++.|+-+. ..+.
T Consensus       162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~  238 (340)
T 4aow_A          162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD--KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQ  238 (340)
T ss_dssp             EEEECSSSCSSCEEEEEECSCSSSCEEEEEETT--SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCE
T ss_pred             eEEEEeccccCcccceEEccCCCCcEEEEEcCC--CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCe
Confidence            222221 22345566777665433 33333221  2555444443322222221223456889988777666553 4467


Q ss_pred             EEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEccCC
Q psy5768         471 IERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       471 I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      |...++............ .....+++..+..+.+-...+.|...+..++
T Consensus       239 i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          239 AMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence            777787765444333322 3334444443322222223344544444333

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=82.41  E-value=0.31  Score=36.12  Aligned_cols=32  Identities=28%  Similarity=0.716  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCcee
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKV  579 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~  579 (652)
                      ..|..+||..  | -...|...++ +|+|.||.||.
T Consensus        12 d~C~snPC~n--g-a~gtC~~~~g-~y~C~C~~Gy~   43 (61)
T 2k2s_B           12 AACSSNPCGP--E-AAGTCKETNS-GYICRCNQGYR   43 (61)
T ss_dssp             CHHHHCSSCS--S-SCCEEEECSS-EEEEECCTTEE
T ss_pred             CcCcCCCCcC--C-CccccccCCC-ceEeECCCCCc
Confidence            3455677763  2 0014555555 69999999998

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=82.15  E-value=0.42  Score=42.15  Aligned_cols=28  Identities=14%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             cccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         560 DICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       560 ~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|+..++ +|+|.|+.||.+..+ +.|.+
T Consensus       110 ~~C~n~~g-~y~C~C~~Gy~g~~~~~~C~~  138 (143)
T 2bou_A          110 TVCFNTVG-SYSCRCRPGWKPRHGIPNNQK  138 (143)
T ss_dssp             SEEEECSS-CEEEECCSSSCBCTTCCSSBT
T ss_pred             CEEECCCC-CEEeeCCCCcccCCCCccCcc
Confidence            46776665 699999999999888 77765

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=81.60  E-value=0.68  Score=31.77  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=16.2

Q ss_pred             cce--ecCCCceEEEeCCccccCCCccc
Q psy5768         250 LCL--YNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       250 lC~--~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|+  ....+|+|.|+.||.   |..|.
T Consensus        16 ~C~~~~~~~~~~C~C~~G~~---G~~Ce   40 (45)
T 1a3p_A           16 VXMHIESLDSYTCNCVIGYS---GDRCQ   40 (45)
T ss_dssp             EEEECTTTSSEEEECCTTEE---TTTTC
T ss_pred             EEEeecCCCCEEEEcCCCCc---CCcCC
Confidence            455  334489999999984   56675

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=81.11  E-value=73  Score=35.35  Aligned_cols=78  Identities=6%  Similarity=0.064  Sum_probs=47.2

Q ss_pred             ceEEEecCCCEEEEEeC-----------------------------------CCCeEEEEecCCCce-EEEecCCCCcee
Q psy5768         450 NALALDHQAEKLFWGDA-----------------------------------RLDKIERCDYDGTNR-IVLSKISPLHPF  493 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~-----------------------------------~~~~I~~~~ldG~~~-~~l~~~~~~~p~  493 (652)
                      .++++|+.++.+|+.-.                                   ..+.|..+|+..... -..-......--
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~  463 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGG  463 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCc
Confidence            35899999999997311                                   115577777654332 222111111112


Q ss_pred             EEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEec
Q psy5768         494 DMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       494 glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      .++..++.||..+ ..+.++.++..+|+....+..
T Consensus       464 ~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          464 TLSTAGNLVFQGT-AAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEeCCCEEEEEC-CcccchhhhhhcChhheEecC
Confidence            3556688888884 567888899888887655543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=80.67  E-value=42  Score=32.36  Aligned_cols=176  Identities=10%  Similarity=0.013  Sum_probs=90.4

Q ss_pred             EEecCCCCeEEEEecCCCe---eEEEecCCCCCCCCCCCeeEEEEECC--CCEEEEEeccCCcceEEEEEcCCCc--cEE
Q psy5768           4 AVSSPTQSKIVVCNLEGEY---QTTILSNESNDTSTLSKISSIAVWPV--KGKMFWSNVTKQVVTIEMAFMDGTK--RET   76 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~v~~d~~--~~~lyw~d~~~~~~~I~~~~~dgs~--~~~   76 (652)
                      +++....+.|++++++...   ...+..       .-..+..|+++|.  ...|.-..   ..+.|..+++....  ...
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~-------h~~~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVHAV-------HSASVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEECC-------CSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCE
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEeec-------CCCceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeee
Confidence            4444456777788776432   122221       2246889999986  44555444   56788888776432  122


Q ss_pred             EEeCCCcCCccCCCCcEEEEccC------------CcEEEEeCCCCEEEEEEcCCCc----EEEEEeCCCCCceeEEEcC
Q psy5768          77 VVSQKKYPAVTACNLHIAVDWIA------------QNIYWSDPKENVIEVARLTGQY----RYVLISGGVDQPSALAVDP  140 (652)
Q Consensus        77 v~~~~~~~~p~~~~~~lavDw~~------------~~lY~~d~~~~~I~v~~~dg~~----~~~l~~~~~~~P~~iavd~  140 (652)
                      .+... ...+.    .+++.+..            ++++.+-+..+.|.+.+++...    ....+.+-....+.++..|
T Consensus       140 ~~~~h-~~~v~----~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          140 IIDAH-AIGVN----SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             EEECC-SSCEE----EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             eeecc-cCccc----eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence            23333 33344    55554321            3455665566777777765432    1112222234578899998


Q ss_pred             CC--CeEEEEecCCCCeEEEEeCCCCC---cEEEEe-ec-ccCceeEEEeccCCEEEEEeCC
Q psy5768         141 ES--GYLFWSESGKIPLIARAGLDGKK---QTILAQ-EI-IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       141 ~~--g~lywtd~~~~~~I~~~~ldg~~---~~~~~~-~~-~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ..  +.++.+-. ....|..-+++...   ...++. .. -.....+++.+.+..|.-...|
T Consensus       215 ~~~~~~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          215 TVLLRSYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             CCSSSEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             CCCCceEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            53  45544432 23445554544321   122221 11 1244667777666666555555

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=80.66  E-value=0.6  Score=32.34  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      +||.  ||.|..+   ...++++|.|+.||..
T Consensus        12 ~pC~--nG~C~~~---~~~~~~~C~C~~GytG   38 (46)
T 1k36_A           12 GYCL--HGQCIYL---VDMSQNYCRCEVGYTG   38 (46)
T ss_dssp             SSCS--SEEEEEE---TTTTEEEEEECTTCSS
T ss_pred             CCCC--CCEeecc---CCCCCEEEECCCCCcc
Confidence            8887  3555431   1224799999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=80.23  E-value=43  Score=32.21  Aligned_cols=202  Identities=8%  Similarity=-0.018  Sum_probs=104.3

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCc-c-eEE---eeccCceeeeEEEcc-CCEEEEEeCCCCeEEEEEcCC
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-H-RVL---LERQGSVEGLAYEYV-HNYLYWTCNNDATINKIDLDS  387 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~-~-~~i---~~~~~~~~glAvDw~-~~~LYwtd~~~~~I~~~~~~~  387 (652)
                      ..+.+++|++..+.|.... ..+.|...+++... . +.+   ......+..|++.+. .+.+..+-...+.|.+.++..
T Consensus        12 ~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             cceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            4577889988666555544 45777777766432 1 111   133446778888764 244445556678888888765


Q ss_pred             CCCc-----cEEEEEe-CCCCCceEEEEeCC--CCEEEEEecCCCCCceEEEeecCCC-ceEEE-E-----------cCC
Q psy5768         388 PKAQ-----RIVVVRL-GQHDKPRGIDIDSC--DSRIYWTNWNSHLPSIQRAFFSGFG-TESII-T-----------TDI  446 (652)
Q Consensus       388 ~~~~-----~~~~~~~-~~~~~P~~Iavdp~--~g~Lywtd~~~~~~~I~r~~ldG~~-~~~l~-~-----------~~l  446 (652)
                      ....     .+.+... .......+|+++|.  ..+|+.+...   +.|...++.... ...+. .           ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND---GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC---CcEEEecCCChHHhccccccccccccccccCCcc
Confidence            3211     1333333 33467788999997  5555555433   255555543322 11111 0           112


Q ss_pred             CCCceEEEecC---CCEEEEEeCCCCeEEEEecCCCceEEEe--cCCCCceeEEEEeCC-----EEEEEcCCCCeEEEEE
Q psy5768         447 TMPNALALDHQ---AEKLFWGDARLDKIERCDYDGTNRIVLS--KISPLHPFDMAVYGE-----FIFWTDWVIHAVLRAN  516 (652)
Q Consensus       447 ~~P~glaiD~~---~~~LYw~D~~~~~I~~~~ldG~~~~~l~--~~~~~~p~glav~~~-----~lYwtd~~~~~I~~~~  516 (652)
                      .....+++.+.   ...|..+... +.+...+........+.  ........++++..+     .++.+-...+.|..-+
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALE-QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETT-EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecCC-CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence            23456777665   5555555433 33322233333322222  112234567777644     5666655666665555


Q ss_pred             ccCC
Q psy5768         517 KYTG  520 (652)
Q Consensus       517 k~~g  520 (652)
                      ..++
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	652
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	4e-45
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	3e-18
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	7e-06
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	6e-44
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-15
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	8e-05
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	9e-10
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	2e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-09
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	1e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	5e-08
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	3e-07
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	6e-08
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-08
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	1e-07
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	9e-07
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	1e-07
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	1e-06
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-07
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-07
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	2e-07
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	6e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	2e-06
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	3e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	6e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	1e-05
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	3e-05
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	0.001
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-05
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	2e-04
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	7e-04
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	0.002
d2ghsa1	295	b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tume	0.003

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (403), Expect = 4e-45
 Identities = 56/265 (21%), Positives = 120/265 (45%), Gaps = 7/265 (2%)

Query: 280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTIN 339
            +++++  +I+ + + +++ +             K II L++D   K ++++DI + +I 
Sbjct: 3   HLLFAQTGKIERLPL-ERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61

Query: 340 SVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL 398
               +G     ++ +  GS EG+A +++   ++WT +    I    +D  + + +     
Sbjct: 62  RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--- 118

Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQA 458
                PRGI  D     +YWT+WN   P I+ +   G     +   ++ +PN L  D  +
Sbjct: 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178

Query: 459 EKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKY 518
            +L W DA   + E  +     R  + +    +PF +  YG+ +++TDW  ++V+  +  
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLA 237

Query: 519 TGEEVYTLRKNIR-RPMGIVAISDN 542
             +E+ T   + + R  GI      
Sbjct: 238 ISKEMDTFHPHKQTRLYGITIALSQ 262

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.6 bits (203), Expect = 3e-18
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 12/232 (5%)

Query: 9   TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 68
              KI    LE          ++        I  +A   V   ++W+++++   +I  A 
Sbjct: 8   QTGKIERLPLERNTMKKT-EAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP--SIGRAS 64

Query: 69  MDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 128
           + G +  T++ Q            IA+D + + I+W+D + + IEVA++ G  R VL   
Sbjct: 65  LHGGEPTTIIRQDLG-----SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119

Query: 129 GVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFF 187
           G+  P  +  DP  G L+W++  +  P I  + +DG  + ILAQ+ +     +T D    
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179

Query: 188 SAFYRNLSKGNIHIISL--SNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT 237
              + +        ++        V      P+  +      +Y  D +T +
Sbjct: 180 QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-NLYYTDWKTNS 230

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 15/143 (10%), Positives = 39/143 (27%), Gaps = 17/143 (11%)

Query: 1   MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
           ++    +    KI   +++G  +             L   + +       ++ W +    
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRI------LAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189

Query: 61  VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA-RLTG 119
               E        R  V+   +YP        +      +N+Y++D K N +        
Sbjct: 190 --RAECLNPAQPGRRKVLEGLQYP------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239

Query: 120 QYRYVLISGGVDQPSALAVDPES 142
           +           +   + +    
Sbjct: 240 KEMDTFHPHKQTRLYGITIALSQ 262

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 6e-44
 Identities = 68/267 (25%), Positives = 135/267 (50%), Gaps = 18/267 (6%)

Query: 279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTI 338
           A++ ++  + +  + + D+S+  S   +      ++N++ L  +     +++SD+ +  I
Sbjct: 2   AYLFFTNRHEVRKMTL-DRSEYTSLIPN------LRNVVALDTEVASNRIYWSDLSQRMI 54

Query: 339 NSVFFNGSNH-----RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI 393
            S   + ++       V+     + +GLA +++H+ +YWT +   T++  D    K + +
Sbjct: 55  CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114

Query: 394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALA 453
                    KPR I +D     +YWT+W +    I++   +G    S++T +I  PN + 
Sbjct: 115 FRENG---SKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGIT 170

Query: 454 LDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHA 511
           LD  + +L+W D++L  I   D +G NR  I+  +    HPF +AV+ + +FWTD +  A
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230

Query: 512 VLRANKYTGEEVYTLRKNIRRPMGIVA 538
           +  AN+ TG +V  L +N+  P  +V 
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVL 257

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 9   TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 68
            + ++    L+    T+++ N  N       + ++       +++WS+++++   I    
Sbjct: 8   NRHEVRKMTLDRSEYTSLIPNLRN-------VVALDTEVASNRIYWSDLSQR--MICSTQ 58

Query: 69  MDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 128
           +D     +         + A +  +AVDWI  NIYW+D     + VA   G  R  L   
Sbjct: 59  LDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 117

Query: 129 GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFS 188
              +P A+ VDP  G+++W++ G    I + GL+G     L  E I     ITLDL    
Sbjct: 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 177

Query: 189 AFYR----------NLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---KIYSKDAQ 234
            ++           +++ GN   I           S+  + D  +  DI    I+S +  
Sbjct: 178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237

Query: 235 TGTNP 239
           TG++ 
Sbjct: 238 TGSDV 242

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 8e-05
 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 32  NDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNL 91
             T  +   + I +  + G+++W +      +I    ++G  R+T++  +K         
Sbjct: 158 LVTENIQWPNGITLDLLSGRLYWVDSKLH--SISSIDVNGGNRKTILEDEKR-----LAH 210

Query: 92  HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV 138
             ++      ++W+D     I  A         L++  +  P  + +
Sbjct: 211 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 9e-10
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSC 274
           GTN C  NNGGC+ +C    +   C C  G      + C
Sbjct: 1   GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 39

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
            C   NG C  +C  D      C C  G  L+   R C
Sbjct: 4   ECLDNNGGCSHVC-NDLKIGYECLCPDGFQLV-AQRRC 39

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA 630
           C   +F C++  CI     CD   +C D SDE    C 
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
           C    F+C+   CIP    CD   +C D SDE    C
Sbjct: 3   CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
             +   C  ++F+C DG CI +   CD    C D SDE    C
Sbjct: 2   SAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMR 632
           +  CS   FKC+ G CIP + TCD   +C D SDE    C  +
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
           C + NG C+  C      +  C C  G  L+ D  SCT
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C   NGGC + C  + G    C C  G  +  DG SC+    +
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           CS+ +F+C DG CI     CD   +C D SDE
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 589 INTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
           +      + FKC  G CI  ++ C+   +C D SDE I  C
Sbjct: 3   VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           C   +F+CSDG CI  ++ CDR Y+C D SDE
Sbjct: 3   CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C ++NGGC   CL       C+CA G  +  D   C     F
Sbjct: 2   CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 9e-07
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
           C   NG C   C L+E G   CSC  G  L +D   C
Sbjct: 2   CSLDNGGCTHYC-LEEVGWRRCSCAPGYKLGDDLLQC 37

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
           CS  +F C  G CI  +  CD   +C DKSDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C ++NGGC + C        C+CAHG V+  D KSC   + F
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
           C   NG CD  C  +E  +V CSC  G VL +D++SC       
Sbjct: 1   CSLDNGGCDQFC-REERSEVRCSCAHGYVLGDDSKSCVSTERFP 43

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
           C   NG C+  CK     +VVCSC  G  L E+ +SC 
Sbjct: 3   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE 40

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C + NG C + C  +     VC+C  G  +A++ KSC     F
Sbjct: 3   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
           C ++NG C + C     S VC+CA G  +A +GK+C     +
Sbjct: 3   CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 6e-07
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
           C   NG+CD  C  +E   VVCSC  G  L ++ ++C 
Sbjct: 3   CSLDNGDCDQFC-HEEQNSVVCSCARGYTLADNGKACI 39

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 593 CSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDEGILYCA 630
           C EH+ +C      CI     CD   +C D SDE    C+
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 593 CSEHDFKC-SDGMCIPFNQTCDRVYNCHDKSDE 624
           C   +F+C  DG+CIP    CD   +C D SDE
Sbjct: 4   CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 589 INTVCSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDE 624
           ++  C   DF C      CIP    CD   +C + SDE
Sbjct: 1   LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 593 CSEHDFKC--SDGMCIPFNQTCDRVYNCHDKSDE 624
           C EH+ +C   D  CI     CD   +C +  DE
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 593 CSEHDFKCSDG--MCIPFNQTCDRVYNCHDKSDE 624
           C  H+  C      CIP +  CD   +C    DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 593 CSEHDFKC--SDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
           C +  F+C  ++  CI     CD   +CH+  DE    C
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 40

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 238 NPCGVNNGGCAELCLYN------GVSAVCACAHG-VVAQDGKSC 274
               ++NGGC  LCL             CAC  G ++A+D +SC
Sbjct: 5   ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)

Query: 551 CRHLNGNCDDICKLDET-----GQVVCSCFTGKVLMEDNRSC 587
               NG C  +C           +  C+C  G +L  D RSC
Sbjct: 7   TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 593 CSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDE 624
           C    F+CS+     G C P +  CD   +C D  DE
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN 590
           + C        +  C   C  +  G   CSC     L +D ++C +N
Sbjct: 1   NECTDFV----DVPCSHFC-NNFIGGYFCSCPPEYFLHDDMKNCGVN 42

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 555 NGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
              C  +C ++  G   C C  G  L    ++C
Sbjct: 7   PDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKAC 38

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 551 CRHLNGN---CDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
           C+   G    CD  C  +  G   CSC  G VL  + R+C+
Sbjct: 4   CQVAPGEAPTCDHHC-HNHLGGFYCSCRAGYVLHRNKRTCS 43

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Length = 295

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 16/186 (8%), Positives = 50/186 (26%), Gaps = 3/186 (1%)

Query: 321 YDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATI 380
           +D    T ++ +I +  ++ +        V       +     +   +      ++   +
Sbjct: 25  FDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIASDDGLFL 82

Query: 381 NKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTES 440
                         +      ++     +    +    T            +    G  +
Sbjct: 83  RDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT 141

Query: 441 IITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE 500
            +  DI++PN++         ++ D +++++ R   D    +   K            G 
Sbjct: 142 KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 201

Query: 501 FIFWTD 506
                D
Sbjct: 202 DGSVCD 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	652
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.71
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.6
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.57
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.38
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.38
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.18
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.11
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.06
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	99.03
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.02
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.01
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.0
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.0
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.99
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.95
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.95
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.95
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.93
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.93
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.92
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.92
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	98.91
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.89
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.88
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.85
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.82
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.79
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.79
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.78
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.77
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.75
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.73
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.73
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.73
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.72
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.61
d1nt0a3	45	Mannose-binding protein associated serine protease	98.6
d1szba2	45	Mannose-binding protein associated serine protease	98.59
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.56
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.45
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1nt0a3	45	Mannose-binding protein associated serine protease	98.34
d1szba2	45	Mannose-binding protein associated serine protease	98.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.3
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.27
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.21
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.16
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.13
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.06
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.05
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.05
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.98
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.96
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.92
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.86
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.82
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.73
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.58
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.41
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.31
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.06
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.04
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.98
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.31
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	96.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.12
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.09
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	95.97
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	95.96
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	95.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.86
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	95.69
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	95.67
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.63
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	95.25
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	95.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.1
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.07
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	94.97
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.73
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	94.72
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	94.37
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.32
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	94.3
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	94.29
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.26
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	94.04
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	93.79
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	93.2
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	92.92
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	92.83
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	92.8
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	92.78
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	92.7
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	92.61
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	92.6
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	92.28
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	92.06
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	91.82
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.76
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	91.73
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	91.64
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	91.64
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	91.53
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	91.39
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	89.95
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	89.71
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	89.71
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	89.7
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	89.58
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.41
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	89.41
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	88.83
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.71
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	88.7
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	88.58
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	88.5
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	88.28
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	88.21
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	88.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	87.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	85.24
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	84.72
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	84.57
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	80.39
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	80.31

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-45  Score=367.23  Aligned_cols=257  Identities=26%  Similarity=0.535  Sum_probs=226.1

Q ss_pred             eEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCc----ceEEe-e
Q psy5768         279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN----HRVLL-E  353 (652)
Q Consensus       279 ~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~----~~~i~-~  353 (652)
                      +||||++++.|++++| +..+..    .+.  ..+++++|||||+.+++|||+|...+.|++++++|..    .++++ .
T Consensus         2 ~fLl~s~~~~I~~~~l-~~~~~~----~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           2 AYLFFTNRHEVRKMTL-DRSEYT----SLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             CEEEEECBSSEEEEET-TSCCCE----EEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             CEEEEECCCeEEEEEC-CCCcce----eee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC
Confidence            7999999999999999 665533    221  3567899999999999999999999999999998743    34444 7


Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEee
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFF  433 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~l  433 (652)
                      ++..|.|||+||++++|||+|...++|++++++|..   ...+....+.+|++|||||.+|+|||++++.. ++|+|++|
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~-~~I~r~~~  150 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGL  150 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEET
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccCCC-cceeEecc
Confidence            788999999999999999999999999999998864   33344467899999999999999999999865 59999999


Q ss_pred             cCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCC--CCceeEEEEeCCEEEEEcCCCCe
Q psy5768         434 SGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKIS--PLHPFDMAVYGEFIFWTDWVIHA  511 (652)
Q Consensus       434 dG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~--~~~p~glav~~~~lYwtd~~~~~  511 (652)
                      ||++++.++..++.+|+||++|+.+++|||+|...++|++++++|++++++....  +.+|++|++++++|||+||.+++
T Consensus       151 dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~  230 (266)
T d1ijqa1         151 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  230 (266)
T ss_dssp             TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred             CCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCe
Confidence            9999999998889999999999999999999999999999999999988886543  67899999999999999999999


Q ss_pred             EEEEEccCCceEEEEecccCCcceeEEEeccCCCC
Q psy5768         512 VLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDAC  546 (652)
Q Consensus       512 I~~~~k~~g~~~~~~~~~~~~p~~i~~~~~~~~~~  546 (652)
                      |++++|.+|+..+.+..++..|++|+++|+..||.
T Consensus       231 I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~~QP~  265 (266)
T d1ijqa1         231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR  265 (266)
T ss_dssp             EEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCC
T ss_pred             EEEEECCCCcceEEEEcCCCCceEEEEECCccCCC
Confidence            99999999999999998889999999999888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-45  Score=366.89  Aligned_cols=258  Identities=22%  Similarity=0.450  Sum_probs=226.3

Q ss_pred             eEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCc
Q psy5768         279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGS  357 (652)
Q Consensus       279 ~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~  357 (652)
                      .||||+.+..|++++| ++................+.++|||||+.+++|||+|...++|+++.++|+..++++ .++..
T Consensus         2 ~fLl~s~~~~I~~~~l-d~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQTGKIERLPL-ERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEEEEEEEEEEE-SSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeCCCeEEEEEC-CCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            5999999999999999 654432111111112334678999999999999999999999999999999888888 67889


Q ss_pred             eeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC
Q psy5768         358 VEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG  437 (652)
Q Consensus       358 ~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~  437 (652)
                      |.|||+||++++|||+|...++|.++++++..  +++++ ...+..|++|||||.+|+|||++++...++|+|+.|||++
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~--~~~l~-~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCce--EEEEe-cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            99999999999999999999999999998864  44444 4567999999999999999999999777799999999999


Q ss_pred             ceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEEEEEcCCCCeEEEEEc
Q psy5768         438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       438 ~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~lYwtd~~~~~I~~~~k  517 (652)
                      ++.++..++.+|+|||+|+.+++|||+|.+.++|++++++|.++++++.. +.+|++|++++++||||||..++|++++|
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence            99999889999999999999999999999999999999999999988874 58999999999999999999999999999


Q ss_pred             cCCceEEEEec-ccCCcceeEEEec
Q psy5768         518 YTGEEVYTLRK-NIRRPMGIVAISD  541 (652)
Q Consensus       518 ~~g~~~~~~~~-~~~~p~~i~~~~~  541 (652)
                      .+|+..+++.. ...+|+||+++|.
T Consensus       237 ~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         237 AISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCccceEECCCCCCCcceEEEeCC
Confidence            99988877764 4478999999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=289.72  Aligned_cols=180  Identities=26%  Similarity=0.448  Sum_probs=162.8

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCC----ccEEE
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT----KRETV   77 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs----~~~~v   77 (652)
                      |++++.  ...|+++++++.....+++       .++.+++||||+.+++|||+|  ...+.|+++.++|+    ..+++
T Consensus         3 fLl~s~--~~~I~~~~l~~~~~~~~~~-------~~~~~~~id~d~~~~~lYw~D--~~~~~I~~~~l~~~~~~~~~~~~   71 (266)
T d1ijqa1           3 YLFFTN--RHEVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTV   71 (266)
T ss_dssp             EEEEEC--BSSEEEEETTSCCCEEEEC-------SCSSEEEEEEETTTTEEEEEE--TTTTEEEEEEC--------CEEE
T ss_pred             EEEEEC--CCeEEEEECCCCcceeeeC-------CCCceEEEEEEeCCCEEEEEE--CCCCEEEEEEecCCCCCcceEEE
Confidence            788886  5679999999998888875       567899999999999999999  88899999999984    46777


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      +..+ +..|.    ||||||++++|||+|...++|++++++|+.+.+++...+.+|++|+|||.+|+|||++++..++|+
T Consensus        72 ~~~~-~~~p~----glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~  146 (266)
T d1ijqa1          72 ISRD-IQAPD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (266)
T ss_dssp             ECSS-CSCCC----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EeCC-CCCcc----eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCccee
Confidence            7787 88899    999999999999999999999999999999999999889999999999999999999999889999


Q ss_pred             EEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCC
Q psy5768         158 RAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       158 ~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      |++|||+.++.++.+.+.+|+||++|+.+++|||+|...+
T Consensus       147 r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            9999999999999888999999999999999999987643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-34  Score=286.23  Aligned_cols=258  Identities=22%  Similarity=0.307  Sum_probs=201.7

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      |++++.  .+.|.++++++.....+.+... .....+.+.+||||+.+++|||+|  ...++|+++.++|+..++++..+
T Consensus         3 fLl~s~--~~~I~~~~ld~~~~~~~~~~~~-~~~~~~~~~~ld~D~~~~~iywsd--~~~~~I~~~~l~g~~~~~v~~~~   77 (263)
T d1npea_           3 HLLFAQ--TGKIERLPLERNTMKKTEAKAF-LHIPAKVIIGLAFDCVDKVVYWTD--ISEPSIGRASLHGGEPTTIIRQD   77 (263)
T ss_dssp             EEEEEE--EEEEEEEEESSSCBCGGGCEEE-EEEEEEEEEEEEEETTTTEEEEEE--TTTTEEEEEESSSCCCEEEECTT
T ss_pred             EEEEeC--CCeEEEEECCCccccccccccc-cccCCCcEEEEEEEeCCCEEEEEE--CCCCeEEEEEcccCCcEEEEEec
Confidence            677775  6799999999876442111000 000235789999999999999999  88899999999999999999888


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEe
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAG  160 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~-~~~I~~~~  160 (652)
                       +..|.    ||||||++++|||+|...++|++++++|+.+++++..++..|++|+|||.+|+|||++++. .++|+|+.
T Consensus        78 -~~~p~----~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          78 -LGSPE----GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             -CCCEE----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             -ccccc----EEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence             88999    9999999999999999999999999999999999988899999999999999999999984 56899999


Q ss_pred             CCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCC
Q psy5768         161 LDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPC  240 (652)
Q Consensus       161 ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C  240 (652)
                      |||++++.++..++.+|+|||+|+.+++|||+|                                               
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d-----------------------------------------------  185 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD-----------------------------------------------  185 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEe-----------------------------------------------
Confidence            999877776655555666666665555555554                                               


Q ss_pred             CCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEE
Q psy5768         241 GVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELS  320 (652)
Q Consensus       241 ~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~  320 (652)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (263)
T d1npea_         186 --------------------------------------------------------------------------------  185 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCC
Q psy5768         321 YDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQ  400 (652)
Q Consensus       321 ~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~  400 (652)
                                  ...++|.+++++|+.+++++.++..|.|||++  ++.|||||...++|.+++..+..  ...++.-..
T Consensus       186 ------------~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~--~~~~~~~~~  249 (263)
T d1npea_         186 ------------AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK--EMDTFHPHK  249 (263)
T ss_dssp             ------------TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE--EEEEECCSS
T ss_pred             ------------CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc--cceEECCCC
Confidence                        33344444444444445555666789999998  79999999999999999986421  233333356


Q ss_pred             CCCceEEEEeCC
Q psy5768         401 HDKPRGIDIDSC  412 (652)
Q Consensus       401 ~~~P~~Iavdp~  412 (652)
                      ..+|.+|+|-+.
T Consensus       250 ~~~~~gi~v~~~  261 (263)
T d1npea_         250 QTRLYGITIALS  261 (263)
T ss_dssp             CCCCCCEEEECS
T ss_pred             CCCcceEEEeCC
Confidence            688999998764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=4.2e-19  Score=176.71  Aligned_cols=241  Identities=15%  Similarity=0.255  Sum_probs=180.8

Q ss_pred             CCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCc
Q psy5768         131 DQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDV  210 (652)
Q Consensus       131 ~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~  210 (652)
                      ..|++||+|+ +|.+|+++.....+|.+...++.....+....+..|.||++|. +++|||++..++.   +.       
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~---i~-------   81 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRV---VT-------   81 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEE---EE-------
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeece---ee-------
Confidence            4799999997 7999999988778899998888877776666688999999997 4679999876321   10       


Q ss_pred             eEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeeccee
Q psy5768         211 STISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRID  290 (652)
Q Consensus       211 ~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~  290 (652)
                          +...                          +                        ++                  .
T Consensus        82 ----~~~~--------------------------~------------------------~~------------------~   89 (260)
T d1rwia_          82 ----LAAG--------------------------S------------------------NN------------------Q   89 (260)
T ss_dssp             ----ECTT--------------------------C------------------------SC------------------C
T ss_pred             ----eeee--------------------------c------------------------cc------------------e
Confidence                0000                          0                        00                  0


Q ss_pred             EEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCE
Q psy5768         291 SIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNY  369 (652)
Q Consensus       291 ~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~  369 (652)
                      .+ . .             ...+..+.++++|. .+.|||+|....++.++..++....... .+...|.+|++|. .++
T Consensus        90 ~~-~-~-------------~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~  152 (260)
T d1rwia_          90 TV-L-P-------------FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGN  152 (260)
T ss_dssp             EE-C-C-------------CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCC
T ss_pred             ee-e-e-------------eeeeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCC
Confidence            00 0 0             01123467788887 4579999998899999988876654444 6778999999998 556


Q ss_pred             EEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCC
Q psy5768         370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMP  449 (652)
Q Consensus       370 LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P  449 (652)
                      ||+++...++|.+++.++.   ....+....+..|.+|++|+ .|.|||+|++.+  +|.+...+|...+.+....+..|
T Consensus       153 ~~v~~~~~~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~--~i~~~~~~~~~~~~~~~~~~~~P  226 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAESN---NQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTN--QVVKLLAGSTTSTVLPFTGLNTP  226 (260)
T ss_dssp             EEEEEGGGTEEEEECTTTC---CEEECCCSSCCSEEEEEECT-TCCEEEEETTTT--EEEEECTTCSCCEECCCCSCCCE
T ss_pred             Eeeeccccccccccccccc---eeeeeeccccCCCccceeee-eeeeeeeecCCC--EEEEEeCCCCeEEEEccCCCCCe
Confidence            9999999999999987764   34444446789999999999 689999999854  89999999888777666678899


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEecCCC
Q psy5768         450 NALALDHQAEKLFWGDARLDKIERCDYDGT  479 (652)
Q Consensus       450 ~glaiD~~~~~LYw~D~~~~~I~~~~ldG~  479 (652)
                      .||++|.. +.|||+|...++|.+++-.+.
T Consensus       227 ~~i~~d~~-g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         227 LAVAVDSD-RTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             EEEEECTT-CCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEEEeCC-CCEEEEECCCCEEEEEeCCCC
Confidence            99999965 689999999999998887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=1.3e-18  Score=173.21  Aligned_cols=215  Identities=14%  Similarity=0.222  Sum_probs=163.9

Q ss_pred             ceEEEEEEEcCCCeEEEeeccc-ccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQK-GTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~-~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      ..|.+|++|. ++.+|+++... ++|.++...+....... .+...|.|||+|+. ++|||+|...+.|.+.+ .+.   
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~~~-~~~---   87 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTLAA-GSN---   87 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEEECT-TCS---
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-CCEEEeeeeeceeeeee-ecc---
Confidence            4688999995 57799987644 67888877766544444 56779999999985 57999999877665432 222   


Q ss_pred             cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         392 RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       392 ~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      ...+.....+..|.+||+++ .|.|||+|....  ++.+...++..........+..|.||++|.. ++||+++....+|
T Consensus        88 ~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i  163 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNN--RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRV  163 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECT-TCCEEEEEGGGT--EEEEECTTCSSCEECCCCSCCSCCEEEECTT-CCEEEEEGGGTEE
T ss_pred             ceeeeeeeeeeecccccccc-cceeEeeccccc--cccccccccceeeeeeecccCCcceeeecCC-CCEeeeccccccc
Confidence            23444445678999999999 678999998754  8999999888776666667889999999975 5799999999999


Q ss_pred             EEEecCCCceEEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEE-ecccCCcceeEEE
Q psy5768         472 ERCDYDGTNRIVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTL-RKNIRRPMGIVAI  539 (652)
Q Consensus       472 ~~~~ldG~~~~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~-~~~~~~p~~i~~~  539 (652)
                      .+++.+|..+.++....+..|.||+++ ++.|||+|+.+++|++++..++. ...+ ..++..|.+|++-
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEEC
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEe
Confidence            999999998888776667899999998 56999999999999999875433 3333 3345678777654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.71  E-value=5.9e-16  Score=158.45  Aligned_cols=206  Identities=14%  Similarity=0.154  Sum_probs=154.6

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCC----CCeEEEEEcCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNN----DATINKIDLDSPK  389 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~----~~~I~~~~~~~~~  389 (652)
                      .+.+++||.. +.|||+|...++|+|++.+|....... .....|.|||++.. ++||+++..    ...|..++..+..
T Consensus        41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEEEEcCCCce
Confidence            3579999965 679999999999999999886544443 66678999999975 578888753    3456665554432


Q ss_pred             CccEEEEE-eCCCCCceEEEEeCCCCEEEEEecCCC----CCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEE
Q psy5768         390 AQRIVVVR-LGQHDKPRGIDIDSCDSRIYWTNWNSH----LPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       390 ~~~~~~~~-~~~~~~P~~Iavdp~~g~Lywtd~~~~----~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~  464 (652)
                        ...++. ......|.+++++| .|.||++|....    ...|+|...+|...+.+. ..+..|+||++|++++.||++
T Consensus       119 --~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         119 --LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             --CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE
T ss_pred             --eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEe
Confidence              233332 23457899999999 678999997532    246999999998766655 467899999999999999999


Q ss_pred             eCCCCeEEEEecCCC--ceEEE------ecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         465 DARLDKIERCDYDGT--NRIVL------SKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       465 D~~~~~I~~~~ldG~--~~~~l------~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      |...++|.++++++.  .....      .......|.||+++ ++.||++++..++|.++++ +|+....+.
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            999999999998643  22111      11224569999998 5799999999999999998 577655554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.68  E-value=1.3e-14  Score=147.80  Aligned_cols=259  Identities=15%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             EEEeCCCCCceeEEEcCCCCeEEEEecCC------CCeEEEEeCCCCCcEEEEeec----ccCceeEEEeccCCEEEEEe
Q psy5768         124 VLISGGVDQPSALAVDPESGYLFWSESGK------IPLIARAGLDGKKQTILAQEI----IMPIKDITLDLKFFSAFYRN  193 (652)
Q Consensus       124 ~l~~~~~~~P~~iavd~~~g~lywtd~~~------~~~I~~~~ldg~~~~~~~~~~----~~~p~gl~lD~~~~~ly~~d  193 (652)
                      ..+..++..|.++|+|+ +|.||+++...      .++|.|.+.++.....+....    ...|+||++|..+++||+.+
T Consensus        11 ~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad   89 (314)
T d1pjxa_          11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD   89 (314)
T ss_dssp             EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred             EEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE
Confidence            34455789999999998 79999998542      357999998877666554322    34699999999999999988


Q ss_pred             CCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCc
Q psy5768         194 LSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKS  273 (652)
Q Consensus       194 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~  273 (652)
                      ...+ +..+             .+...    ...+...                                          
T Consensus        90 ~~~~-i~~~-------------~~~g~----~~~~~~~------------------------------------------  109 (314)
T d1pjxa_          90 MRLG-LLVV-------------QTDGT----FEEIAKK------------------------------------------  109 (314)
T ss_dssp             TTTE-EEEE-------------ETTSC----EEECCSB------------------------------------------
T ss_pred             CCCe-EEEE-------------eCCCc----EEEEEec------------------------------------------
Confidence            7522 1111             11000    0000000                                          


Q ss_pred             ccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecc---------------cccE
Q psy5768         274 CSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQ---------------KGTI  338 (652)
Q Consensus       274 C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~---------------~~~I  338 (652)
                                         .. ++.       .+      ..+-.+++|.. +.||++|..               .++|
T Consensus       110 -------------------~~-~g~-------~~------~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_         110 -------------------DS-EGR-------RM------QGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             -------------------CT-TSC-------BC------BCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             -------------------cc-ccc-------cc------CCCcEEEECCC-CCEEEecCccCcccccccceeccCCceE
Confidence                               00 000       00      11123445543 456666532               3578


Q ss_pred             EEEeccCCcceEEeeccCceeeeEEEccCC----EEEEEeCCCCeEEEEEcCCCCCc---cEEEEEeC--CCCCceEEEE
Q psy5768         339 NSVFFNGSNHRVLLERQGSVEGLAYEYVHN----YLYWTCNNDATINKIDLDSPKAQ---RIVVVRLG--QHDKPRGIDI  409 (652)
Q Consensus       339 ~~~~~~g~~~~~i~~~~~~~~glAvDw~~~----~LYwtd~~~~~I~~~~~~~~~~~---~~~~~~~~--~~~~P~~Iav  409 (652)
                      +++..+|.. ..+..++..|.|||+++.++    .||++|...++|++++++.. +.   ++......  ....|.+|++
T Consensus       156 ~~~~~dg~~-~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~~pdGiav  233 (314)
T d1pjxa_         156 YCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             EEECTTSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             EEEeecCce-eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc-cccceeeEEEEccccccccceeeEE
Confidence            888888753 34457788999999988765    79999999999999987642 21   22233322  2346999999


Q ss_pred             eCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceE
Q psy5768         410 DSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRI  482 (652)
Q Consensus       410 dp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~  482 (652)
                      |+ .|.||+++|+..  +|.+.+.+|......+.....+|+++++..+.++||++++..++|+++++.-..++
T Consensus       234 D~-~GnlyVa~~~~g--~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         234 DE-DNNLLVANWGSS--HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             BT-TCCEEEEEETTT--EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             ec-CCcEEEEEcCCC--EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence            98 689999999854  99999999877666666566789999999888899999999999999999866543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.60  E-value=2.9e-13  Score=138.02  Aligned_cols=248  Identities=14%  Similarity=0.134  Sum_probs=164.3

Q ss_pred             cEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC---CCeEEEEeCCCCCcEE
Q psy5768          92 HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK---IPLIARAGLDGKKQTI  168 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~---~~~I~~~~ldg~~~~~  168 (652)
                      |+++|. .++|||+|...++|.+.+++|......+......|.+|++++ .|.||+++.+.   ...|.+...++.....
T Consensus        44 G~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          44 GLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             eCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            999995 578999999999999999999866555555567899999998 78999998652   2345555555544444


Q ss_pred             EEeec--ccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCC
Q psy5768         169 LAQEI--IMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGG  246 (652)
Q Consensus       169 ~~~~~--~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~  246 (652)
                      ++...  ...|+++++|.. ++||+.|..+...                                               
T Consensus       122 ~~~~~~~~~~~nd~~~d~~-G~l~vtd~~~~~~-----------------------------------------------  153 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYST-----------------------------------------------  153 (319)
T ss_dssp             EECSSSSCCCEEEEEECTT-SCEEEEECCCBTT-----------------------------------------------
T ss_pred             eccCCCcccCCcceeEEec-cceeecccccccc-----------------------------------------------
Confidence            33221  334555555543 2444443321000                                               


Q ss_pred             CcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCC
Q psy5768         247 CAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRK  326 (652)
Q Consensus       247 Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~  326 (652)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (319)
T d2dg1a1         154 --------------------------------------------------------------------------------  153 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc-----cEEEEEeCCC
Q psy5768         327 TLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ-----RIVVVRLGQH  401 (652)
Q Consensus       327 ~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~-----~~~~~~~~~~  401 (652)
                            ...+.++++..+|...+.+..++..|.|||+|..++.||++|...++|.+++++.....     ..........
T Consensus       154 ------~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~  227 (319)
T d2dg1a1         154 ------NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH  227 (319)
T ss_dssp             ------BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             ------cCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc
Confidence                  00122444444444444455567789999999999999999999999999998653221     1122233445


Q ss_pred             CCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-----cCCCCCceEEEecCCCEEEEEeC-----CCCeE
Q psy5768         402 DKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-----TDITMPNALALDHQAEKLFWGDA-----RLDKI  471 (652)
Q Consensus       402 ~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-----~~l~~P~glaiD~~~~~LYw~D~-----~~~~I  471 (652)
                      ..|-+|++|+ .|.||+++++..  +|.+.+.+|.....+..     .....+..++......+||.+..     ..+.|
T Consensus       228 ~~PdGl~vD~-~G~l~Va~~~~g--~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l  304 (319)
T d2dg1a1         228 EGPDSCCIDS-DDNLYVAMYGQG--RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSML  304 (319)
T ss_dssp             SEEEEEEEBT-TCCEEEEEETTT--EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEE
T ss_pred             cceeeeeEcC-CCCEEEEEcCCC--EEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeE
Confidence            6799999998 789999999854  99999999865444321     11235677888877888888743     23456


Q ss_pred             EEEecCC
Q psy5768         472 ERCDYDG  478 (652)
Q Consensus       472 ~~~~ldG  478 (652)
                      ++++...
T Consensus       305 ~~~~~~~  311 (319)
T d2dg1a1         305 YTVNGFA  311 (319)
T ss_dssp             EEEECSS
T ss_pred             EEEeCCC
Confidence            6666544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.60  E-value=4e-14  Score=144.20  Aligned_cols=219  Identities=14%  Similarity=0.156  Sum_probs=157.0

Q ss_pred             cccceEEEEEEEcCCCeEEEeecc-------cccEEEEeccCCcceEEee-----ccCceeeeEEEccCCEEEEEeCCCC
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQ-------KGTINSVFFNGSNHRVLLE-----RQGSVEGLAYEYVHNYLYWTCNNDA  378 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~-------~~~I~~~~~~g~~~~~i~~-----~~~~~~glAvDw~~~~LYwtd~~~~  378 (652)
                      +++..+.++++|. ++.||+++..       .++|++++.++...+.+..     ....|.||++|..++.||.++.. +
T Consensus        15 ~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~   92 (314)
T d1pjxa_          15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-L   92 (314)
T ss_dssp             CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-T
T ss_pred             cCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-C
Confidence            4566678999996 5679998754       3679999988765554441     22369999999999999999864 5


Q ss_pred             eEEEEEcCCCCCccEEEEEe----CCCCCceEEEEeCCCCEEEEEecCC-------------CCCceEEEeecCCCceEE
Q psy5768         379 TINKIDLDSPKAQRIVVVRL----GQHDKPRGIDIDSCDSRIYWTNWNS-------------HLPSIQRAFFSGFGTESI  441 (652)
Q Consensus       379 ~I~~~~~~~~~~~~~~~~~~----~~~~~P~~Iavdp~~g~Lywtd~~~-------------~~~~I~r~~ldG~~~~~l  441 (652)
                      .|.+++.++.   ...++..    ..+..|.++++|| .|.||+||...             ..++|+|...||...+  
T Consensus        93 ~i~~~~~~g~---~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~--  166 (314)
T d1pjxa_          93 GLLVVQTDGT---FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ--  166 (314)
T ss_dssp             EEEEEETTSC---EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE--
T ss_pred             eEEEEeCCCc---EEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeE--
Confidence            7888887763   2222211    1234689999999 58999998542             1236889888886433  


Q ss_pred             EEcCCCCCceEEEecCCC----EEEEEeCCCCeEEEEecCCCc----eEEEecC---CCCceeEEEEe-CCEEEEEcCCC
Q psy5768         442 ITTDITMPNALALDHQAE----KLFWGDARLDKIERCDYDGTN----RIVLSKI---SPLHPFDMAVY-GEFIFWTDWVI  509 (652)
Q Consensus       442 ~~~~l~~P~glaiD~~~~----~LYw~D~~~~~I~~~~ldG~~----~~~l~~~---~~~~p~glav~-~~~lYwtd~~~  509 (652)
                      +...+..||||++++..+    +||++|...++|.++++++..    ++++...   ....|.||+++ ++.||++++..
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC
Confidence            334678899999987654    899999999999999886532    3333321   13469999998 57999999999


Q ss_pred             CeEEEEEccCCceEEEEecccCCcceeE
Q psy5768         510 HAVLRANKYTGEEVYTLRKNIRRPMGIV  537 (652)
Q Consensus       510 ~~I~~~~k~~g~~~~~~~~~~~~p~~i~  537 (652)
                      +.|+++++.+|.....+......|..++
T Consensus       247 g~I~~~dp~~g~~~~~i~~p~~~~t~~a  274 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence            9999999877765555553334444433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.8e-13  Score=136.72  Aligned_cols=218  Identities=12%  Similarity=0.118  Sum_probs=162.8

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee------ccCceeeeEEEccCCEEEEEe-CCCCeEEEEEc
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE------RQGSVEGLAYEYVHNYLYWTC-NNDATINKIDL  385 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~------~~~~~~glAvDw~~~~LYwtd-~~~~~I~~~~~  385 (652)
                      +..|.+|++|+ ++.||++|..+++|.+++.+|.....+..      ....|.+++++...+..+|+. ...+.|.+.+.
T Consensus        22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            56689999997 56799999999999999999865544431      223799999998888777765 45567888776


Q ss_pred             CCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE-cCCCCCceEEEecCCCEEEEE
Q psy5768         386 DSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT-TDITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~-~~l~~P~glaiD~~~~~LYw~  464 (652)
                      ++.   ....+....+..|.++|+++ .|.+|+++...  .++.+...+|+....+-. ..+..|.++++|.. ++||++
T Consensus       101 ~g~---~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~--~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~-g~i~v~  173 (279)
T d1q7fa_         101 YGQ---FVRKFGATILQHPRGVTVDN-KGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEIFIS  173 (279)
T ss_dssp             TSC---EEEEECTTTCSCEEEEEECT-TSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEEEEE
T ss_pred             ccc---ceeecCCCcccccceecccc-CCcEEEEeecc--ceeeEeccCCceeecccccccccccceeeeccc-eeEEee
Confidence            653   23333335678999999998 67899998764  388888888865444332 24678999999954 789999


Q ss_pred             eCCCCeEEEEecCCCceEEEecC-CCCceeEEEEe-CCEEEEEcCCCC-eEEEEEccCCceEEEEeccc--CCcceeEEE
Q psy5768         465 DARLDKIERCDYDGTNRIVLSKI-SPLHPFDMAVY-GEFIFWTDWVIH-AVLRANKYTGEEVYTLRKNI--RRPMGIVAI  539 (652)
Q Consensus       465 D~~~~~I~~~~ldG~~~~~l~~~-~~~~p~glav~-~~~lYwtd~~~~-~I~~~~k~~g~~~~~~~~~~--~~p~~i~~~  539 (652)
                      |...+.|..++.+|.....+... .+.+|.||+++ ++.||++|+..+ .|...++ +|+.+.++....  ..|.+|++-
T Consensus       174 d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         174 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence            99999999999999877776432 36789999998 568999998655 5766665 677666665433  456666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=3.9e-13  Score=134.25  Aligned_cols=185  Identities=12%  Similarity=0.079  Sum_probs=149.9

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK   81 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~   81 (652)
                      .|+|+|..+.+|+++|.+|+.+..+... +........|.+++++...+..+|+.. ..+..|.+.+.+|.....+-...
T Consensus        35 ~i~VaD~~n~rI~v~d~~G~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~  112 (279)
T d1q7fa_          35 DIIVADTNNHRIQIFDKEGRFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQIYNQYGQFVRKFGATI  112 (279)
T ss_dssp             CEEEEEGGGTEEEEECTTSCEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEEECTTSCEEEEECTTT
T ss_pred             CEEEEECCCCEEEEEeCCCCEEEEeccc-CCCcccccccccccccccccccceecc-CCccccccccccccceeecCCCc
Confidence            4899999999999999999999888643 334456678999999888887777651 35678999999998777665555


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEe-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~-~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                       +..|.    ++|+|. .+++|+++....++.+.+.+|+....+-. ..+..|.++++|+ +|.||++|+. ...|.+.+
T Consensus       113 -~~~p~----~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~-~~~V~~~d  184 (279)
T d1q7fa_         113 -LQHPR----GVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFN  184 (279)
T ss_dssp             -CSCEE----EEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEE
T ss_pred             -ccccc----eecccc-CCcEEEEeeccceeeEeccCCceeecccccccccccceeeecc-ceeEEeeecc-ccceeeee
Confidence             77888    999995 77899999999999999999987665533 3578999999997 7899999985 67899999


Q ss_pred             CCCCCcEEEEeec-ccCceeEEEeccCCEEEEEeCCCC
Q psy5768         161 LDGKKQTILAQEI-IMPIKDITLDLKFFSAFYRNLSKG  197 (652)
Q Consensus       161 ldg~~~~~~~~~~-~~~p~gl~lD~~~~~ly~~d~~g~  197 (652)
                      .+|+....+...+ +..|.||++|..+ +||++|..++
T Consensus       185 ~~G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~  221 (279)
T d1q7fa_         185 YEGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNN  221 (279)
T ss_dssp             TTCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSS
T ss_pred             cCCceeeeecccccccCCcccccccCC-eEEEEECCCC
Confidence            9998766664433 7789999999865 5999986533

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.50  E-value=2.7e-12  Score=129.56  Aligned_cols=212  Identities=16%  Similarity=0.113  Sum_probs=159.1

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEE
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV  394 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~  394 (652)
                      .+.++++++. ++||++|...++|++++.+|.. +.+......|.+||+|..+ +||.++...+.+.++.+.+..+....
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCC-CCEEEEeCCCCEEEEEeCCCCE-EEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceee
Confidence            4678888874 6899999999999999988863 4445556789999999865 59999988888888887765544455


Q ss_pred             EEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEc----------CCCCCceEEEecCCCEEEEE
Q psy5768         395 VVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT----------DITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       395 ~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~----------~l~~P~glaiD~~~~~LYw~  464 (652)
                      +........|.+|++++ .|.+|+++...  .+|++..+++.........          ....|+||+.|  .+.||++
T Consensus       106 ~~~~~~~~~~n~i~~~~-~g~~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~  180 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLS-DTQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVS  180 (302)
T ss_dssp             EEECTTCSCEEEEEESS-SSEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEE
T ss_pred             ccccCCccccceeEEcc-CCCEEeecccc--ccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeee
Confidence            55566778899999999 68999999874  4899988877654443322          23467888887  7899999


Q ss_pred             eCCCCeEEEEecCCCce----EEEecCCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEe--cccCCcceeE
Q psy5768         465 DARLDKIERCDYDGTNR----IVLSKISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLR--KNIRRPMGIV  537 (652)
Q Consensus       465 D~~~~~I~~~~ldG~~~----~~l~~~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~--~~~~~p~~i~  537 (652)
                      +...++|.+++.++...    .....  ...|.+|+++ ++.||++++..++|.+++.. |+...+..  ..+..|..++
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~va  257 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  257 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             cCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEE
Confidence            99999999999987432    22222  4679999998 56899999999999999874 54333333  2234454444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.45  E-value=1.3e-11  Score=124.05  Aligned_cols=208  Identities=12%  Similarity=0.108  Sum_probs=148.5

Q ss_pred             EEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEE
Q psy5768         317 IELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVV  396 (652)
Q Consensus       317 ~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~  396 (652)
                      ++..+|.++++|||+|...++|++.++.+...++.. --..|.++|.+.. +.|+++..  +.|.+++..+.+  .+.+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~d-g~l~va~~--~gl~~~d~~tg~--~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISD-SKQLIASD--DGLFLRDTATGV--LTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEET-TEEEEEET--TEEEEEETTTCC--EEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEecC-CCEEEEEe--CccEEeecccce--eeEEe
Confidence            577899999999999999999999998876554433 2336889999865 56666653  568888876432  23333


Q ss_pred             EeC---CCCCceEEEEeCCCCEEEEEecCCC----CCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCC
Q psy5768         397 RLG---QHDKPRGIDIDSCDSRIYWTNWNSH----LPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLD  469 (652)
Q Consensus       397 ~~~---~~~~P~~Iavdp~~g~Lywtd~~~~----~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~  469 (652)
                      ...   ....|.++++|| .|.||+++....    .+.++|.. +|. . ..+..++..|||++++...+.|||+|...+
T Consensus        95 ~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~-~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGK-V-TKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTE-E-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCc-E-EEEeeccCCcceeeecCCCceEEEeecccc
Confidence            221   234688999999 688999876432    22455543 342 2 233356788999999999999999999999


Q ss_pred             eEEEEecCCC------ceEEEec--CCCCceeEEEEe-CCEEEEEcCCCCeEEEEEccCCceEEEEecccCCcce
Q psy5768         470 KIERCDYDGT------NRIVLSK--ISPLHPFDMAVY-GEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMG  535 (652)
Q Consensus       470 ~I~~~~ldG~------~~~~l~~--~~~~~p~glav~-~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~  535 (652)
                      +|+++++|+.      .+..+..  .....|.|++++ ++.||++.|..+.|.++++ +|+....+.....+|..
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~  244 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC  244 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEE
Confidence            9999998753      2333332  224679999998 5699999999999999998 57776666543334433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.42  E-value=9.2e-10  Score=108.47  Aligned_cols=289  Identities=12%  Similarity=0.132  Sum_probs=179.0

Q ss_pred             cEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeE
Q psy5768         101 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI  180 (652)
Q Consensus       101 ~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl  180 (652)
                      -+|+++...+.|.+.|++.......+..+ ..|++++++|...+||++..+ ...|...++........+. ....|.++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~-~~~i~v~d~~t~~~~~~~~-~~~~~~~~   79 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAH-SNDVSIIDTATNNVIATVP-AGSSPQGV   79 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGG-GTEEEEEETTTTEEEEEEE-CSSSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCceeeeee-cccccccc
Confidence            47999999999999997654333333333 579999999988889999865 4578888776443322222 23467888


Q ss_pred             EEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceE
Q psy5768         181 TLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVC  260 (652)
Q Consensus       181 ~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C  260 (652)
                      +++..+..+|....++..........                                                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  105 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTS------------------------------------------------------  105 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTT------------------------------------------------------
T ss_pred             ccccccccccccccccceeeeccccc------------------------------------------------------
Confidence            88777666666555432221110000                                                      


Q ss_pred             EEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEE
Q psy5768         261 ACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINS  340 (652)
Q Consensus       261 ~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~  340 (652)
                                               ...+..+..                  ...+..+.+.+..+.++.+......+..
T Consensus       106 -------------------------~~~~~~~~~------------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2         106 -------------------------NTVAGTVKT------------------GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             -------------------------TEEEEEEEC------------------SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -------------------------ceeeeeccc------------------cccceEEEeecCCCeeeeeeccccceee
Confidence                                     000000010                  0112334444444555555444444444


Q ss_pred             EeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEe
Q psy5768         341 VFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTN  420 (652)
Q Consensus       341 ~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd  420 (652)
                      .+.........+.....|..+++...++.+|.+......+.+......    ...........|.++++++....+|++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKVEAAPSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred             eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce----eeeecccccCCcceeecccccccccccc
Confidence            444333223333455578999999999999999988777777765442    2222333557899999999999999988


Q ss_pred             cCCCCCceEEEeecCCCceEEEE-cCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEE
Q psy5768         421 WNSHLPSIQRAFFSGFGTESIIT-TDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMA  496 (652)
Q Consensus       421 ~~~~~~~I~r~~ldG~~~~~l~~-~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~gla  496 (652)
                      .+.....|...++..  .+.+.. ..-..|.+|++++++++||++....+.|...|+.......-+..+ ..|+++.
T Consensus       219 ~~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg-~~P~~~g  292 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGT--NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG-KNPYASG  292 (301)
T ss_dssp             ECSSCCEEEEEETTT--TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEECCS
T ss_pred             ccceeeeeeeeecCC--CeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC-CCCcEeE
Confidence            765444676665533  232222 123579999999999999999999999999998654332223322 5687653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.3e-09  Score=107.34  Aligned_cols=309  Identities=13%  Similarity=0.132  Sum_probs=191.4

Q ss_pred             EEEecCCCCeEEEEecCCCe-e--EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEEE
Q psy5768           3 IAVSSPTQSKIVVCNLEGEY-Q--TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETVV   78 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~-~--~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v~   78 (652)
                      ++|+++.++.|++++++..- +  ......       -..|.+|+++|.+++||.+.  ...+.|+.+.++... ...++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~-------~~~v~~la~spDG~~L~v~~--~~d~~i~~~~i~~~~~~~~~~   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDV-------PGQVQPMVVSPDKRYLYVGV--RPEFRVLAYRIAPDDGALTFA   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEC-------SSCCCCEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcC-------CCCEeEEEEeCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEe
Confidence            68999999999999976432 2  222221       25788999999999999999  778888888876542 22222


Q ss_pred             e-CCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEE--eCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5768          79 S-QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI--SGGVDQPSALAVDPESGYLFWSESGKIPL  155 (652)
Q Consensus        79 ~-~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~--~~~~~~P~~iavd~~~g~lywtd~~~~~~  155 (652)
                      . ...-..|.    +|+++..++.||+++.....|...+.+........  ......|++++++|...++|+++.. ...
T Consensus        77 ~~~~~~~~p~----~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-~~~  151 (333)
T d1ri6a_          77 AESALPGSLT----HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDR  151 (333)
T ss_dssp             EEEECSSCCS----EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTE
T ss_pred             eecccCCCce----EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-cce
Confidence            1 11134577    99999999999999988888887776655433332  3345679999999998999999875 456


Q ss_pred             EEEEeCCCCCcEEEEee------cccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeee
Q psy5768         156 IARAGLDGKKQTILAQE------IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIY  229 (652)
Q Consensus       156 I~~~~ldg~~~~~~~~~------~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~  229 (652)
                      |................      ....|..++++.....+|+.....+.........           ...         
T Consensus       152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-----------~~~---------  211 (333)
T d1ri6a_         152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD-----------PHG---------  211 (333)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC-----------TTS---------
T ss_pred             eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc-----------ccc---------
Confidence            77666554433322111      1356788899888888888776644322211000           000         


Q ss_pred             eeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeee
Q psy5768         230 SKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRN  309 (652)
Q Consensus       230 ~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~  309 (652)
                                                 ...                      .      ...+.. .+...         
T Consensus       212 ---------------------------~~~----------------------~------~~~~~~-~~~~~---------  226 (333)
T d1ri6a_         212 ---------------------------NIE----------------------C------VQTLDM-MPENF---------  226 (333)
T ss_dssp             ---------------------------CCE----------------------E------EEEEEC-SCTTC---------
T ss_pred             ---------------------------cee----------------------e------eeeeee-eecCC---------
Confidence                                       000                      0      000000 00000         


Q ss_pred             ccccceEEEEEEEcCCCeEEEeecccccEEEEecc--CCcceEEe--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEc
Q psy5768         310 STMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFN--GSNHRVLL--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDL  385 (652)
Q Consensus       310 ~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~--g~~~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~  385 (652)
                       .....+.++++.+..+.+|.+....+.+....++  +...+...  .....|.+||+++.++.||+++...++|.+.++
T Consensus       227 -~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         227 -SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             -CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             -CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence             0012234556666667777776665555544443  22222221  344579999999999999999988888888766


Q ss_pred             CCCCCccEEEEEeCCCCCceEEEEeC
Q psy5768         386 DSPKAQRIVVVRLGQHDKPRGIDIDS  411 (652)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~P~~Iavdp  411 (652)
                      +...+..+.+........|..|++..
T Consensus       306 d~~tG~l~~~~~~~~g~~p~~v~~~~  331 (333)
T d1ri6a_         306 VGEQGLLHEKGRYAVGQGPMWVVVNA  331 (333)
T ss_dssp             ETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred             ECCCCcEEEEEeccCCCCCcEEEEEc
Confidence            65433233344445567798888864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.38  E-value=3.8e-09  Score=103.92  Aligned_cols=286  Identities=13%  Similarity=0.128  Sum_probs=179.8

Q ss_pred             eEEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~   80 (652)
                      |.+|+...++.|.++|++ ++...++.. .       ..|.+|+++|.+++||+++  ...++|..+++........+..
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~-g-------~~p~~va~spdG~~l~v~~--~~~~~i~v~d~~t~~~~~~~~~   72 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPV-G-------SNPMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIATVPA   72 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC-S-------SSEEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEEC-C-------CCceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCceeeeeec
Confidence            689999999999999976 554555542 1       4789999999999999999  7788999999875433333333


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG  160 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~  160 (652)
                      +  ..|.    +++++..++.+|.+......+.+.+.........+.. ...|..+++.|...+++.+... ...+....
T Consensus        73 ~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~-~~~~~~~~  144 (301)
T d1l0qa2          73 G--SSPQ----GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG-DKTVSVIN  144 (301)
T ss_dssp             S--SSEE----EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT-TTEEEEEE
T ss_pred             c--cccc----ccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeecc-ccceeeee
Confidence            3  4577    9999998888999988888999988876654444443 4678999999988888877653 33444444


Q ss_pred             CCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCC
Q psy5768         161 LDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPC  240 (652)
Q Consensus       161 ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C  240 (652)
                      .........+ .....|..+++.+..+.+|+...+.+....... .                                  
T Consensus       145 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------------------  188 (301)
T d1l0qa2         145 TVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT-V----------------------------------  188 (301)
T ss_dssp             TTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEET-T----------------------------------
T ss_pred             ccccceeeec-ccCCCceEEEeeccccceeeecccccccccccc-c----------------------------------
Confidence            4332222212 123456777777766666666554222111000 0                                  


Q ss_pred             CCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEE
Q psy5768         241 GVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELS  320 (652)
Q Consensus       241 ~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~  320 (652)
                                                                   ...+..              .+.   ....+.+++
T Consensus       189 ---------------------------------------------~~~~~~--------------~~~---~~~~~~~~~  206 (301)
T d1l0qa2         189 ---------------------------------------------TNSVID--------------TVK---VEAAPSGIA  206 (301)
T ss_dssp             ---------------------------------------------TTEEEE--------------EEE---CSSEEEEEE
T ss_pred             ---------------------------------------------ceeeee--------------ccc---ccCCcceee
Confidence                                                         000000              000   001234455


Q ss_pred             EEcCCCeEEEeec--ccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEe
Q psy5768         321 YDYKRKTLFYSDI--QKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL  398 (652)
Q Consensus       321 ~D~~~~~lywsd~--~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~  398 (652)
                      +++....+|++..  ..+.|+.+++........+.....|.+||+++.++.||++....++|.+.++..    .+.+..+
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t----~~~~~~~  282 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT----NTITATM  282 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT----TEEEEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC----CeEEEEE
Confidence            5555566665543  234566655543222222233357999999999999999999999999999764    2333344


Q ss_pred             CCCCCceEE
Q psy5768         399 GQHDKPRGI  407 (652)
Q Consensus       399 ~~~~~P~~I  407 (652)
                      .....|.++
T Consensus       283 ~vg~~P~~~  291 (301)
T d1l0qa2         283 AVGKNPYAS  291 (301)
T ss_dssp             ECSSSEECC
T ss_pred             eCCCCCcEe
Confidence            445667664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=4.4e-09  Score=105.22  Aligned_cols=307  Identities=9%  Similarity=0.036  Sum_probs=183.6

Q ss_pred             CCEEEEEeccCCcceEEEEEcCCCccEEEEe--CCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCc--EEE
Q psy5768          49 KGKMFWSNVTKQVVTIEMAFMDGTKRETVVS--QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY--RYV  124 (652)
Q Consensus        49 ~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~--~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~--~~~  124 (652)
                      ++.||++.  ...++|+.++++......++.  .. -+.|.    +||+.+.++.||.+....+.|.+.+++...  .+.
T Consensus         3 ~~~v~v~~--~~~~~I~v~~~~~~~~l~~~~~~~~-~~~v~----~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~   75 (333)
T d1ri6a_           3 KQTVYIAS--PESQQIHVWNLNHEGALTLTQVVDV-PGQVQ----PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF   75 (333)
T ss_dssp             EEEEEEEE--GGGTEEEEEEECTTSCEEEEEEEEC-SSCCC----CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ceEEEEEC--CCCCcEEEEEEcCCCCeEEEEEEcC-CCCEe----EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            56799999  888999999987543222221  11 25577    999999999999999888999888876432  222


Q ss_pred             EE-eCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEe--ecccCceeEEEeccCCEEEEEeCCCCcEEE
Q psy5768         125 LI-SGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ--EIIMPIKDITLDLKFFSAFYRNLSKGNIHI  201 (652)
Q Consensus       125 l~-~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~--~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~  201 (652)
                      .. ......|..|+++|...+||+++++ ...|.....+.........  .....|.++++++.++++|+.+..+.....
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYN-AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL  154 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETT-TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccC-CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeE
Confidence            22 2234679999999988899999875 4456555554443332222  224567888888888888777765433222


Q ss_pred             EEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcccccceEE
Q psy5768         202 ISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYDAFI  281 (652)
Q Consensus       202 i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~L  281 (652)
                      ........                                                                      .+
T Consensus       155 ~~~~~~~~----------------------------------------------------------------------~~  164 (333)
T d1ri6a_         155 FTVSDDGH----------------------------------------------------------------------LV  164 (333)
T ss_dssp             EEECTTSC----------------------------------------------------------------------EE
T ss_pred             EEeccCCc----------------------------------------------------------------------ce
Confidence            11000000                                                                      00


Q ss_pred             EEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCc--ce---EEe----
Q psy5768         282 MYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HR---VLL----  352 (652)
Q Consensus       282 l~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~--~~---~i~----  352 (652)
                       ...   ......                .....+..++|+.....+|++....+.......+...  ..   .+.    
T Consensus       165 -~~~---~~~~~~----------------~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  224 (333)
T d1ri6a_         165 -AQD---PAEVTT----------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE  224 (333)
T ss_dssp             -EEE---EEEEEC----------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             -eee---ceeeee----------------ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec
Confidence             000   000000                0001234566666667777776655554444332211  11   111    


Q ss_pred             --eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEE
Q psy5768         353 --ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR  430 (652)
Q Consensus       353 --~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r  430 (652)
                        .....+.++++++.++.+|.+....+.+.+..++.................|++||++|..++||+++...+  .|..
T Consensus       225 ~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~--~v~v  302 (333)
T d1ri6a_         225 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH--HISV  302 (333)
T ss_dssp             TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC--EEEE
T ss_pred             CCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCC--eEEE
Confidence              223467889999999999999988888887776543322222222345578999999999999999976544  5555


Q ss_pred             EeecCCC--ceEEEEcC-CCCCceEEEe
Q psy5768         431 AFFSGFG--TESIITTD-ITMPNALALD  455 (652)
Q Consensus       431 ~~ldG~~--~~~l~~~~-l~~P~glaiD  455 (652)
                      ..+|...  -+.+.... -..|..+++.
T Consensus       303 ~~id~~tG~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         303 YEIVGEQGLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred             EEEECCCCcEEEEEeccCCCCCcEEEEE
Confidence            4455432  12222222 2468888886

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=7.1e-10  Score=111.29  Aligned_cols=228  Identities=14%  Similarity=0.062  Sum_probs=151.1

Q ss_pred             CeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcC
Q psy5768          39 KISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT  118 (652)
Q Consensus        39 ~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~d  118 (652)
                      .+.+|++++ +++||++|  ...++|+|++.+|.. +.+.. . ...|.    +||+|. .++||+++...+.+.+.+++
T Consensus        29 ~~e~iAv~p-dG~l~vt~--~~~~~I~~i~p~g~~-~~~~~-~-~~~~~----gla~~~-dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTN--HEVGEIVSITPDGNQ-QIHAT-V-EGKVS----GLAFTS-NGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECT-TSCEEEEE--TTTTEEEEECTTCCE-EEEEE-C-SSEEE----EEEECT-TSCEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECC-CCCEEEEe--CCCCEEEEEeCCCCE-EEEEc-C-CCCcc----eEEEcC-CCCeEEEecCCceEEEEEec
Confidence            578999997 47899999  889999999999874 33333 3 45688    999997 57899998777777666654


Q ss_pred             ---CCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec----------ccCceeEEEecc
Q psy5768         119 ---GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI----------IMPIKDITLDLK  185 (652)
Q Consensus       119 ---g~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~----------~~~p~gl~lD~~  185 (652)
                         +......-......|.++++|+ .|.+|+++.+ ...|++..+++..........          ...|+||+.|  
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--  173 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--  173 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred             ccccceeeccccCCccccceeEEcc-CCCEEeeccc-cccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence               3444333334567899999998 7899999986 568888887765444333221          3456777665  


Q ss_pred             CCEEEEEeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCC
Q psy5768         186 FFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHG  265 (652)
Q Consensus       186 ~~~ly~~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G  265 (652)
                      .++||+.+...+....                                                                
T Consensus       174 ~~~l~~~~~~~~~i~~----------------------------------------------------------------  189 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLR----------------------------------------------------------------  189 (302)
T ss_dssp             TTEEEEEETTTTEEEE----------------------------------------------------------------
T ss_pred             CCceeeecCCCCeEEe----------------------------------------------------------------
Confidence            4567777665433222                                                                


Q ss_pred             ccccCCCcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccC
Q psy5768         266 VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG  345 (652)
Q Consensus       266 ~l~~dg~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g  345 (652)
                                                +++....... ......   ....+.+|++|.. +.||+++...++|.++..+|
T Consensus       190 --------------------------~~~~~~~~~~-~~~~~~---~~~~pdgia~d~d-G~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         190 --------------------------IPVDSTDKPG-EPEIFV---EQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             --------------------------EEBCTTSCBC-CCEEEE---ESCCCSSEEEBTT-CCEEEECBTTCCEEEECTTC
T ss_pred             --------------------------cccccccccc-cccccc---CCCCCcceEECCC-CCEEEEEcCCCcEEEECCCC
Confidence                                      1110000000 000000   0112346788875 46999999899999999887


Q ss_pred             CcceEEe--eccCceeeeEEE---ccCCEEEEEeCC
Q psy5768         346 SNHRVLL--ERQGSVEGLAYE---YVHNYLYWTCNN  376 (652)
Q Consensus       346 ~~~~~i~--~~~~~~~glAvD---w~~~~LYwtd~~  376 (652)
                      ....+.-  .++..|.++|++   +.++.||.+...
T Consensus       239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            5433322  467789999995   456889998654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=5e-09  Score=108.06  Aligned_cols=172  Identities=12%  Similarity=0.041  Sum_probs=120.3

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceE----Ee--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRV----LL--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~----i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~  388 (652)
                      .+.++.|++..++||++|...++|..+..+......    +.  ..-..|.++++++.++.+|.+....++|.+++++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            467899999999999999998999888765433221    11  223589999999999999999999999999998764


Q ss_pred             CCc-cEEEEEeC---------------CCCCceEEEEeCCCCEEEEEecCCCC---CceEEEeec--CCCceE--EEEc-
Q psy5768         389 KAQ-RIVVVRLG---------------QHDKPRGIDIDSCDSRIYWTNWNSHL---PSIQRAFFS--GFGTES--IITT-  444 (652)
Q Consensus       389 ~~~-~~~~~~~~---------------~~~~P~~Iavdp~~g~Lywtd~~~~~---~~I~r~~ld--G~~~~~--l~~~-  444 (652)
                      ... ...+-...               ....|.+|+++|..++||+++.+...   ..|....++  |.-.+.  +... 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            432 11111110               11246789999999999999876432   124433433  332211  1221 


Q ss_pred             -CCCCCceEEEec-CCCEEEEEeCCCCeEEEEecCCCceEEEec
Q psy5768         445 -DITMPNALALDH-QAEKLFWGDARLDKIERCDYDGTNRIVLSK  486 (652)
Q Consensus       445 -~l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~  486 (652)
                       ...+|.+|++++ .++.||+++...+.|..+++++.....+..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~  349 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVAR  349 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEE
Confidence             246899999997 678899999999999999888776555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=1.3e-08  Score=101.55  Aligned_cols=231  Identities=11%  Similarity=0.053  Sum_probs=154.8

Q ss_pred             eEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCC
Q psy5768          41 SSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ  120 (652)
Q Consensus        41 ~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~  120 (652)
                      .|..||++++.|||+|  ...++|+|+++++...+++ ...  ..|.    +++.+. .++|+++.  .+.|.+.++++.
T Consensus        21 Egp~wd~~~~~l~wvD--i~~~~I~r~d~~~g~~~~~-~~~--~~~~----~i~~~~-dg~l~va~--~~gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFN--ILERELHELHLASGRKTVH-ALP--FMGS----ALAKIS-DSKQLIAS--DDGLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEE--GGGTEEEEEETTTTEEEEE-ECS--SCEE----EEEEEE-TTEEEEEE--TTEEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEE--CCCCEEEEEECCCCeEEEE-ECC--CCcE----EEEEec-CCCEEEEE--eCccEEeecccc
Confidence            4667999999999999  8889999999998765544 322  3467    999985 56777775  357999998866


Q ss_pred             cEEEEEeC----CCCCceeEEEcCCCCeEEEEecCC-----CCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEE
Q psy5768         121 YRYVLISG----GVDQPSALAVDPESGYLFWSESGK-----IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFY  191 (652)
Q Consensus       121 ~~~~l~~~----~~~~P~~iavd~~~g~lywtd~~~-----~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~  191 (652)
                      ..+.+...    ....|.++++|| +|.||+++...     ...+.+.. +|+  ...+...+..|||++++...+.+||
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGK--VTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTE--EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCc--EEEEeeccCCcceeeecCCCceEEE
Confidence            66666542    234689999998 78999997532     22455543 332  2233355789999999999999999


Q ss_pred             EeCCCCcEEEEEecCCCCceEEEeecCCCCCcceeeeeeeccCCCCCCCCCCCCCCcccceecCCCceEEEeCCccccCC
Q psy5768         192 RNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDG  271 (652)
Q Consensus       192 ~d~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~q~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg  271 (652)
                      +|...+.+...-.           .....                                             .+  .+
T Consensus       165 ~dt~~~~I~~~~~-----------d~~~~---------------------------------------------~~--~~  186 (295)
T d2ghsa1         165 VDTKVNRLMRVPL-----------DARTG---------------------------------------------LP--TG  186 (295)
T ss_dssp             EETTTCEEEEEEB-----------CTTTC---------------------------------------------CB--SS
T ss_pred             eecccceeeEeee-----------ccccc---------------------------------------------cc--cc
Confidence            9987544322210           00000                                             00  00


Q ss_pred             CcccccceEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEE
Q psy5768         272 KSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL  351 (652)
Q Consensus       272 ~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i  351 (652)
                            +..         ..+.+ ..              ....+-++.+|.. +.||++....++|.+++.+|.....+
T Consensus       187 ------~~~---------~~~~~-~~--------------~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         187 ------KAE---------VFIDS-TG--------------IKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             ------CCE---------EEEEC-TT--------------SSSEEEEEEECTT-SCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred             ------ceE---------EEecc-Cc--------------ccccccceEEcCC-CCEEeeeeCCCceEEecCCCcEeeEe
Confidence                  000         01111 11              0123567888875 46999988889999999998766666


Q ss_pred             eeccCceeeeEEE-ccCCEEEEEeCC
Q psy5768         352 LERQGSVEGLAYE-YVHNYLYWTCNN  376 (652)
Q Consensus       352 ~~~~~~~~glAvD-w~~~~LYwtd~~  376 (652)
                      -.....|..+|+. ...+.||+|...
T Consensus       236 ~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         236 EVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cCCCCceEEEEEeCCCCCEEEEEECC
Confidence            5455689999996 456789998753

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.8e-11  Score=82.87  Aligned_cols=41  Identities=32%  Similarity=0.695  Sum_probs=37.2

Q ss_pred             ccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       590 ~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      +..|.+++|+|.+|.||+..|+|||..||.|||||....|.
T Consensus         3 p~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C~   43 (45)
T d1d2la_           3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH   43 (45)
T ss_dssp             CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred             CCcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcCcCc
Confidence            45788999999999999999999999999999999886564

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1e-11  Score=82.13  Aligned_cols=38  Identities=37%  Similarity=0.771  Sum_probs=34.9

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      +|.+++|+|.+|.||+..|+|||..||.|||||....|
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   39 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC   39 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCCCcC
Confidence            58889999999999999999999999999999987544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=1.2e-07  Score=97.45  Aligned_cols=186  Identities=9%  Similarity=-0.018  Sum_probs=115.3

Q ss_pred             eEEEecCCC-CeEEEEecCCCe--eEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEE
Q psy5768           2 FIAVSSPTQ-SKIVVCNLEGEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV   78 (652)
Q Consensus         2 ~i~v~~~~~-~~I~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~   78 (652)
                      .++|.+++. +.|+++.++.+.  ...+...   ..+.-..+..|++++.+++||.++  .+.-..+.++.+++......
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~---~~~~~~~~s~la~s~d~~~ly~~~--~~~~~~~~i~~~~~~~~~~~   78 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRT---EIPQDEPISWMTFDHERKNIYGAA--MKKWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEE---ECCTTCCCSEEEECTTSSEEEEEE--BTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeee---eccCCCCCCEEEEcCCCCEEEEEe--CCcEEEEEEeCCCCeEEEee
Confidence            378998755 478666555443  2222110   011234567899999999999998  55444555555555433332


Q ss_pred             eCCCcCCccCCCCcEEEEccCCcEEEEeCC--CCEEEEEEc--------------CCCcEEEEEe---CCCCCceeEEEc
Q psy5768          79 SQKKYPAVTACNLHIAVDWIAQNIYWSDPK--ENVIEVARL--------------TGQYRYVLIS---GGVDQPSALAVD  139 (652)
Q Consensus        79 ~~~~~~~p~~~~~~lavDw~~~~lY~~d~~--~~~I~v~~~--------------dg~~~~~l~~---~~~~~P~~iavd  139 (652)
                      ... -..|.    .++++..++.+|.+...  .+.+.+...              .+..-.....   ..-.+|++++++
T Consensus        79 ~~~-~~~p~----~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s  153 (365)
T d1jofa_          79 HPI-GGHPR----ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             EEC-CSSGG----GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             ecC-CCCcE----EEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC
Confidence            222 34577    99999888888886543  344444322              2221111111   123478999999


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeec-----ccCceeEEEeccCCEEEEEeCCCCc
Q psy5768         140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-----IMPIKDITLDLKFFSAFYRNLSKGN  198 (652)
Q Consensus       140 ~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~-----~~~p~gl~lD~~~~~ly~~d~~g~~  198 (652)
                      |.+.+||.+|.+. .+|.+...+...........     -..|.++++++.+.++|++....+.
T Consensus       154 PdG~~l~v~d~g~-d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~  216 (365)
T d1jofa_         154 PTETYLYSADLTA-NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR  216 (365)
T ss_dssp             TTSSEEEEEETTT-TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCEEEEeeCCC-CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE
Confidence            9988999999874 47888776655444333221     3468999999999999998765443

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.7e-11  Score=79.33  Aligned_cols=37  Identities=49%  Similarity=1.039  Sum_probs=34.5

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      +|.+.+|+|.+|.||+..|+|||..||.|+|||..  |.
T Consensus         2 sC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~--C~   38 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVG--CV   38 (39)
T ss_dssp             CCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSS--SC
T ss_pred             CCCCCceEeCCCCeEChhhcCCCCCcCCCCchhcc--Cc
Confidence            68899999999999999999999999999999976  63

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.6e-11  Score=84.42  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCccccccCCC-----CceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDICKLDET-----GQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~-----~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|..+||||+|+|+++|.     ++|+|+||+||+|.+| ++|++
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCia   50 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT   50 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCcccC
Confidence            6788999999999998773     4799999999999999 89863

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.5e-11  Score=77.26  Aligned_cols=35  Identities=43%  Similarity=0.801  Sum_probs=33.0

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      .|.+.+|+|.+|.||+..|+|||..||.|||||..
T Consensus         1 PC~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCCceEcCCCCEECchhcCCCCCcCCCCchhhc
Confidence            38889999999999999999999999999999976

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.1e-11  Score=80.36  Aligned_cols=40  Identities=38%  Similarity=0.904  Sum_probs=35.8

Q ss_pred             ccccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       590 ~~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      ...|.+++|+|.+|+|||..|+|||..||.|||||....|
T Consensus         5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c~C   44 (44)
T d1f5ya1           5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC   44 (44)
T ss_dssp             CCCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTTSST
T ss_pred             CCccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCCcC
Confidence            3568889999999999999999999999999999987333

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-10  Score=79.42  Aligned_cols=38  Identities=39%  Similarity=0.947  Sum_probs=34.3

Q ss_pred             ccC-CCceeeccCeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         592 VCS-EHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       592 ~C~-~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      .|. +.+|+|.+|+||+..|+|||..||.|+|||....|
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   43 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC   43 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccCcccC
Confidence            454 68999999999999999999999999999987666

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.4e-11  Score=78.45  Aligned_cols=35  Identities=43%  Similarity=0.903  Sum_probs=33.2

Q ss_pred             ccCCCceeeccCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       592 ~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      +|.+.+|+|.+|.||+..|+|||..||.|||||..
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             cCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcC
Confidence            58889999999999999999999999999999976

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.7e-11  Score=79.58  Aligned_cols=40  Identities=35%  Similarity=0.759  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      ++|||..+||+|+|+|+..+.+|+|+|+.||.+.|+++|+
T Consensus         1 G~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~d~~tC~   40 (40)
T d3bpse1           1 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE   40 (40)
T ss_dssp             CSCGGGTGGGGCSSEEEECSSSEEEECCTTCCEETTTEEC
T ss_pred             CcccCCCCCCCCcCEEEcCCCCEEEECCCCCEECCCCcCC
Confidence            4799999999999999999999999999999556999985

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.5e-11  Score=83.20  Aligned_cols=38  Identities=26%  Similarity=0.634  Sum_probs=35.6

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |+.+||+|+|+|++.++++++|+|+.||+|.+| ++|.+
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence            888999999999999988899999999999999 99986

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7e-11  Score=80.66  Aligned_cols=39  Identities=46%  Similarity=0.882  Sum_probs=35.5

Q ss_pred             cccCCCceeeccCeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       591 ~~C~~~~f~C~~g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      ..|.+++|+|.+|.||+..|+|||+.||.|+|||....|
T Consensus         3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c~C   41 (44)
T d1j8ea_           3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCCCCC
Confidence            468889999999999999999999999999999987444

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.1e-10  Score=76.71  Aligned_cols=36  Identities=36%  Similarity=0.715  Sum_probs=32.4

Q ss_pred             cccCCCceeec--cCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCS--DGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       591 ~~C~~~~f~C~--~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      .+|.+.+|+|.  +++|||..|+|||..||.|||||..
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccC
Confidence            46888999996  4689999999999999999999975

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.2e-10  Score=76.31  Aligned_cols=38  Identities=42%  Similarity=0.990  Sum_probs=34.4

Q ss_pred             cccCCCceeec-cCeecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       591 ~~C~~~~f~C~-~g~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      ..|.+.+|+|. ++.||+..|+|||..||.|+|||..  |.
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~--C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS--CE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT--CC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhcc--CC
Confidence            57889999996 5799999999999999999999986  74

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-10  Score=84.04  Aligned_cols=39  Identities=36%  Similarity=0.749  Sum_probs=36.0

Q ss_pred             CCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       550 ~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      -|..+||+|+|+|++.+.++++|+|+.||+|.+| ++|.+
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   41 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   41 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence            3888899999999999888899999999999999 89986

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.92  E-value=1e-10  Score=78.61  Aligned_cols=38  Identities=37%  Similarity=0.663  Sum_probs=33.5

Q ss_pred             ccCCCceeecc--CeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       592 ~C~~~~f~C~~--g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      .|.+++|+|.+  +.|||..|+|||+.||.|||||....|
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~~~C   41 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC   41 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHH
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCcccC
Confidence            48889999975  689999999999999999999976444

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.92  E-value=2.5e-10  Score=76.29  Aligned_cols=37  Identities=32%  Similarity=0.742  Sum_probs=33.4

Q ss_pred             cCCCceeecc--CeecCCccCCCCCCCCCCCCCCCCCCC
Q psy5768         593 CSEHDFKCSD--GMCIPFNQTCDRVYNCHDKSDEGILYC  629 (652)
Q Consensus       593 C~~~~f~C~~--g~Ci~~~~~Cd~~~dC~d~sde~~~~C  629 (652)
                      |.+.+|+|.+  |.||+..|+|||+.||.|||||....|
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~~C   40 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC   40 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCccccccC
Confidence            7889999964  689999999999999999999987555

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2e-10  Score=80.52  Aligned_cols=39  Identities=38%  Similarity=0.788  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCcccceecC------CCceEEEeCCc-cccCCCccc
Q psy5768         237 TNPCGVNNGGCAELCLYNG------VSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~------~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      -|+|..+||||+|+|++.|      .+|+|+|+.|| |.+|+++|.
T Consensus         4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            4788899999999999765      27999999998 778999995

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.2e-10  Score=75.03  Aligned_cols=36  Identities=33%  Similarity=0.843  Sum_probs=32.4

Q ss_pred             cCCCceeeccC--eecCCccCCCCCCCCCCCCCCCCCCCC
Q psy5768         593 CSEHDFKCSDG--MCIPFNQTCDRVYNCHDKSDEGILYCA  630 (652)
Q Consensus       593 C~~~~f~C~~g--~Ci~~~~~Cd~~~dC~d~sde~~~~C~  630 (652)
                      |.+.+|+|.+|  +|||..|+|||..||.|||||..  |.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~--C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN--CG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS--CC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhcc--CC
Confidence            67889999875  69999999999999999999986  64

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.88  E-value=1.4e-10  Score=77.65  Aligned_cols=36  Identities=33%  Similarity=0.709  Sum_probs=32.8

Q ss_pred             cccCCCceeec--cCeecCCccCCCCCCCCCCCCCCCC
Q psy5768         591 TVCSEHDFKCS--DGMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       591 ~~C~~~~f~C~--~g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      ++|.+.+|+|.  +++||+..|+|||..||.|+|||..
T Consensus         1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             CCCCcCeeECCCCCCcEeechhccCCCCcCCCCchhcc
Confidence            36889999996  4799999999999999999999976

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.2e-10  Score=79.59  Aligned_cols=41  Identities=34%  Similarity=0.743  Sum_probs=36.6

Q ss_pred             CCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccceE
Q psy5768         240 CGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      |..+||+|+|+|+..+.+|+|.|+.|| |.+|+++|...++|
T Consensus         2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~~   43 (50)
T d1autl2           2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF   43 (50)
T ss_dssp             SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCCC
Confidence            788899999999999889999999998 77899999865553

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-10  Score=74.68  Aligned_cols=39  Identities=26%  Similarity=0.526  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceeeccCCccc
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC  587 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~  587 (652)
                      .|+|..+||+|+|+|+.+|. +|+|+||+||.|.++++|.
T Consensus         2 ~neC~~~nggC~h~C~n~~g-~~~C~C~~Gy~L~d~~tC~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKI-GYECLCPDGFQLVAQRRCE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSS-SEEEECCTTCCEETTTEEC
T ss_pred             cccCCCCCCCCcCEEEcCCC-CEEEECCCCCEECCCCcCC
Confidence            58999999999999999987 5999999999996448873

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-09  Score=76.77  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=34.2

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |+.+||+|+|+|+.++. +++|+|+.||+|.+| ++|.+
T Consensus         2 C~~~NGgC~~~C~~~~g-~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2           2 CSLDNGGCTHYCLEEVG-WRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             SSSGGGGCSSEEEECSS-SEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCCcccEeecCCC-CeEEECCCCCEECCCCCcccc
Confidence            78889999999999986 699999999999999 99986

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.4e-10  Score=79.17  Aligned_cols=41  Identities=37%  Similarity=0.936  Sum_probs=36.6

Q ss_pred             CCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccceE
Q psy5768         240 CGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      |..+||+|+|+|+..+.+|+|.|+.|| |.+|+++|.+..+|
T Consensus         3 C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~~   44 (51)
T d2p3ua1           3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY   44 (51)
T ss_dssp             GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred             cCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCcc
Confidence            788899999999999989999999998 77899999866554

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=5.1e-10  Score=79.03  Aligned_cols=41  Identities=39%  Similarity=0.985  Sum_probs=36.7

Q ss_pred             CCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccccceE
Q psy5768         240 CGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      |..+||+|+|+|+..+.+|+|.|+.|| |.+|+++|.+.++|
T Consensus         1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            778999999999998889999999998 78899999876654

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.7e-10  Score=78.42  Aligned_cols=41  Identities=32%  Similarity=0.744  Sum_probs=35.2

Q ss_pred             CCCCCCCCcccceecCC-CceEEEeCCc-cccCCCcccccceE
Q psy5768         240 CGVNNGGCAELCLYNGV-SAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       240 C~~~ng~Cs~lC~~~~~-~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      |..+||+|+|+|+..++ +|+|+|+.|| |.+|+++|....+|
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f   44 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCCcc
Confidence            78899999999998876 5889999998 78899999865544

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=9.5e-10  Score=79.20  Aligned_cols=42  Identities=33%  Similarity=0.850  Sum_probs=36.7

Q ss_pred             CCCCCCCCCcccceecCC-CceEEEeCCc-cccCCCcccccceE
Q psy5768         239 PCGVNNGGCAELCLYNGV-SAVCACAHGV-VAQDGKSCSEYDAF  280 (652)
Q Consensus       239 ~C~~~ng~Cs~lC~~~~~-~~~C~C~~G~-l~~dg~~C~~~~~~  280 (652)
                      .|..+||+|+|+|+..+. +|+|+|+.|| |.+|+++|.+.++|
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f   45 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF   45 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence            488899999999998765 7999999998 77899999976665

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.73  E-value=1.7e-09  Score=72.81  Aligned_cols=35  Identities=37%  Similarity=0.781  Sum_probs=31.3

Q ss_pred             ccCCCceeecc-----CeecCCccCCCCCCCCCCCCCCCC
Q psy5768         592 VCSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDEGI  626 (652)
Q Consensus       592 ~C~~~~f~C~~-----g~Ci~~~~~Cd~~~dC~d~sde~~  626 (652)
                      +|.+.||+|.+     ++|||..|+|||.+||.|||||..
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            47888999974     479999999999999999999976

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.73  E-value=2.7e-09  Score=75.25  Aligned_cols=37  Identities=38%  Similarity=0.846  Sum_probs=34.0

Q ss_pred             CCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       551 C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      |..+||+|+|+|+..+. +++|+|+.||+|..| ++|.+
T Consensus         1 C~~~NGgC~h~C~~~~~-~~~C~C~~Gy~L~~D~~tC~~   38 (51)
T d1kigl_           1 CSLDNGGCDQFCREERS-EVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             CCTTTTSSSSCCCEETT-EECCCCCTTEEECTTSSCEEE
T ss_pred             CCCCCCCcccEeEcCCC-cEEeEcCCCCEECCCCCcccc
Confidence            77889999999999876 699999999999999 99986

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.9e-09  Score=72.42  Aligned_cols=39  Identities=23%  Similarity=0.462  Sum_probs=34.5

Q ss_pred             CCCCC-CCCCCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         238 NPCGV-NNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       238 n~C~~-~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      |||+. .+++|+|+|+..+++|+|.|+.|| |..|+++|..
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence            68974 568999999999999999999998 7789999963

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.4e-09  Score=76.56  Aligned_cols=38  Identities=34%  Similarity=0.787  Sum_probs=34.7

Q ss_pred             CCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       550 ~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      -|..+||+|+|+|+..+. +++|+|+.||+|..| ++|.+
T Consensus         2 ~C~~~NGgC~h~C~n~~g-~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1           2 LCSLDNGDCDQFCHEEQN-SVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             GGGTGGGGCSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             ccCCCCCCcccEeecCCC-CeEeEcCCCCEECCCCCcccc
Confidence            378889999999999887 699999999999999 99986

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.4e-09  Score=69.70  Aligned_cols=39  Identities=23%  Similarity=0.623  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      +|||+. +++|+|+|+..+++|+|.|+.|| |.+|+++|..
T Consensus         1 idEC~~-~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTT-TTSCSSCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCC-CCCCCCEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            489985 68999999999999999999998 6789999964

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=5.6e-09  Score=71.67  Aligned_cols=40  Identities=25%  Similarity=0.602  Sum_probs=31.6

Q ss_pred             CCCCCCCCCC---CcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         237 TNPCGVNNGG---CAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       237 ~n~C~~~ng~---Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      +|||+..|++   |+|+|++.+++|+|.|++|| |.+|+++|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence            4899888766   99999999999999999998 7789999963

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=7.7e-09  Score=70.95  Aligned_cols=40  Identities=28%  Similarity=0.675  Sum_probs=35.7

Q ss_pred             CCCCCCCCC---CCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         237 TNPCGVNNG---GCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       237 ~n~C~~~ng---~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      +|||+..++   +|+|+|++.+++|+|.|+.|| |..|+++|.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            589998877   799999999999999999998 7789999964

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.3e-08  Score=68.22  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCCCC-CCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRH-LNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~-~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|.. .+++|+|+|+.+++ +|+|+||+||.|..| ++|..
T Consensus         1 dEC~~~~~~~C~~~C~n~~G-sy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIG-GYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETT-EEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCC-CEEEeCCCCCEECCCCCeecC
Confidence            46764 56899999999887 699999999999999 88864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=0.00047  Score=70.92  Aligned_cols=180  Identities=7%  Similarity=-0.055  Sum_probs=120.4

Q ss_pred             EEEecCCCCeEEEEecC-CCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEE--Ee
Q psy5768           3 IAVSSPTQSKIVVCNLE-GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV--VS   79 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v--~~   79 (652)
                      ++|+...++.|.++|+. ++.+.+|...        ..|.+|+|+|.+++||.+.   ..+.|..++++....+.+  +.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--------~~~~~vafSPDGk~l~~~~---~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--------YAVHISRMSASGRYLLVIG---RDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--------SSEEEEEECTTSCEEEEEE---TTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--------CCeeEEEECCCCCEEEEEe---CCCCEEEEEccCCceeEEEEEe
Confidence            46777789999999998 5566666531        3689999999999999887   357899999875543333  22


Q ss_pred             CCCcCCccCCCCcEEEEc----cCCcEEEEeCCCCEEEEEEcCCCcEEEEEeC-----------CCCCceeEEEcCCCCe
Q psy5768          80 QKKYPAVTACNLHIAVDW----IAQNIYWSDPKENVIEVARLTGQYRYVLISG-----------GVDQPSALAVDPESGY  144 (652)
Q Consensus        80 ~~~~~~p~~~~~~lavDw----~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~-----------~~~~P~~iavd~~~g~  144 (652)
                      .+  ..|.    ++++..    .++.||.+....+.+.+.+............           ....+..++..+...+
T Consensus       103 ~~--~~~~----~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~  176 (426)
T d1hzua2         103 IG--IEAR----SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  176 (426)
T ss_dssp             CC--SEEE----EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             CC--CCCc----ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCE
Confidence            22  3466    777653    3567888887788888888776544333322           1234566777877778


Q ss_pred             EEEEecCCCCeEEEEeC-CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCCCcEE
Q psy5768         145 LFWSESGKIPLIARAGL-DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIH  200 (652)
Q Consensus       145 lywtd~~~~~~I~~~~l-dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~  200 (652)
                      ++|+..+ ...|..... ++..........-..|.++++++..+++|....+.....
T Consensus       177 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~  232 (426)
T d1hzua2         177 FIVNVKE-TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA  232 (426)
T ss_dssp             EEEEETT-TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEE
T ss_pred             EEEecCC-CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeeccccee
Confidence            8888776 345655544 333333222223467999999999999988877644433

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.8e-08  Score=65.34  Aligned_cols=38  Identities=21%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      ++|.. +++|+|+|+.+++ +|+|.||+||.|..| ++|.+
T Consensus         2 dEC~~-~~~C~~~C~n~~G-sy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           2 DECQD-PDTCSQLCVNLEG-GYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CTTTT-TTSCSSCEECSSS-CCEECCCTTEEECTTTCCEEE
T ss_pred             ccCCC-CCCCCCEeECCCC-CEEeECCCCCeECCCCCcccc
Confidence            67874 6789999999886 699999999999999 88864

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.1e-08  Score=66.60  Aligned_cols=40  Identities=18%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCcccceecCCCceEEEeCCc-cccCCCccc
Q psy5768         236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      ++|||+..++.|+|.|++.+++|+|.|++|| |..++++|.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCccc
Confidence            5899999899999999999999999999998 667999986

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=7.9e-08  Score=65.78  Aligned_cols=39  Identities=28%  Similarity=0.617  Sum_probs=30.0

Q ss_pred             CCCCCCCCC---CccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNGN---CDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng~---Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|...|++   |+|+|+.+++ +|+|.|++||+|..| ++|..
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~g-sy~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3           2 DECRTSLGDSVPCDHYCHNYLG-GYYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             CTTC-------CCSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             cCCccCCCCcCCCCCEeecCCC-CEEEeCCCCCEECCCCCcccc
Confidence            567776665   9999999886 699999999999999 88863

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.2e-07  Score=64.89  Aligned_cols=39  Identities=28%  Similarity=0.594  Sum_probs=33.4

Q ss_pred             CCCCCCCC---CCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         549 TPCRHLNG---NCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       549 ~~C~~~ng---~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.|...++   +|+|+|+.+++ +|+|.|+.||.|..| ++|.+
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~G-sy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           2 DECQVAPGEAPTCDHHCHNHLG-GFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CTTCCCTTSCCSSSSEEEEETT-EEEEECCTTEEECTTSSCEEE
T ss_pred             cCCcCCCCCCCCCCCCCccCCC-CeEEECCCCCeECCCCCCccC
Confidence            56776665   69999999887 699999999999999 88864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.30  E-value=5.1e-05  Score=79.37  Aligned_cols=155  Identities=15%  Similarity=0.240  Sum_probs=105.0

Q ss_pred             cccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee---------ccCceeeeEEEc---cCCEEEEEeCC--
Q psy5768         311 TMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE---------RQGSVEGLAYEY---VHNYLYWTCNN--  376 (652)
Q Consensus       311 ~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~---------~~~~~~glAvDw---~~~~LYwtd~~--  376 (652)
                      +++.++.+|++.+. ++||+++...++|++++..+...+.+..         +.+..-|||+|+   ..+.||++...  
T Consensus        24 ~~L~~P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~  102 (450)
T d1crua_          24 SNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (450)
T ss_dssp             CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCCceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCC
Confidence            56788999999875 6899999878999999876654444431         223556899996   47889986421  


Q ss_pred             ----------CCeEEEEEcCCCCCc---cEEEEEe---CCCCCceEEEEeCCCCEEEEEecCC-----------------
Q psy5768         377 ----------DATINKIDLDSPKAQ---RIVVVRL---GQHDKPRGIDIDSCDSRIYWTNWNS-----------------  423 (652)
Q Consensus       377 ----------~~~I~~~~~~~~~~~---~~~~~~~---~~~~~P~~Iavdp~~g~Lywtd~~~-----------------  423 (652)
                                ...+.+...+.....   .+.++..   .....-..|+++| .|+||++-...                 
T Consensus       103 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~~~~  181 (450)
T d1crua_         103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHT  181 (450)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCC
T ss_pred             CCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccccccccccC
Confidence                      012444444332211   1222221   2224556799999 68999985421                 


Q ss_pred             -------------CCCceEEEeecCCCc----------eEEEEcCCCCCceEEEecCCCEEEEEeCCC
Q psy5768         424 -------------HLPSIQRAFFSGFGT----------ESIITTDITMPNALALDHQAEKLFWGDARL  468 (652)
Q Consensus       424 -------------~~~~I~r~~ldG~~~----------~~l~~~~l~~P~glaiD~~~~~LYw~D~~~  468 (652)
                                   ..++|.|...||+..          ..++...++.|.||++|+ +++||.+|.+.
T Consensus       182 ~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G~  248 (450)
T d1crua_         182 PTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP  248 (450)
T ss_dssp             CCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred             cccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccccc
Confidence                         136899999999853          246778899999999997 68899998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.27  E-value=0.0003  Score=68.51  Aligned_cols=237  Identities=8%  Similarity=-0.007  Sum_probs=142.4

Q ss_pred             eEEEEee-ecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-e---
Q psy5768         279 AFIMYSR-VNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-E---  353 (652)
Q Consensus       279 ~~Ll~s~-~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~---  353 (652)
                      .|++.+. .+.|..+++... .   .+..+..+.....+.+++|.+..++||.+....+.|..+++........+ .   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-~---~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-A---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-E---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCC-e---EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC
Confidence            3555544 467888887322 1   22334333333456788999988899999888889999987653322222 1   


Q ss_pred             --ccCceeeeEEEccCCEEEEEeCC-----------CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEe
Q psy5768         354 --RQGSVEGLAYEYVHNYLYWTCNN-----------DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTN  420 (652)
Q Consensus       354 --~~~~~~glAvDw~~~~LYwtd~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd  420 (652)
                        ....+.++++.+.++.||++...           ...+.+.+...    .+.+........|.+++++|...+||.++
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET----LSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT----TEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC----CeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence              12367899999999999998652           34555565543    22333334557899999999998999874


Q ss_pred             cCC-----CCCc-eEEEee-----------cCC-------Cc-------------------------------------e
Q psy5768         421 WNS-----HLPS-IQRAFF-----------SGF-------GT-------------------------------------E  439 (652)
Q Consensus       421 ~~~-----~~~~-I~r~~l-----------dG~-------~~-------------------------------------~  439 (652)
                      ...     ...+ +.....           +|.       ..                                     .
T Consensus       154 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence            220     0001 111100           100       00                                     0


Q ss_pred             EEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEc
Q psy5768         440 SIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       440 ~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k  517 (652)
                      ......-..+..+++.+....+|..+   +.|...|+........+... ..|.+|++.  +.+||.+.. .+.|...+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~  308 (337)
T d1pbyb_         234 REVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA-LGDLAAYDA  308 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB-SSEEEEEET
T ss_pred             EEecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEcCC-CCEEEEEECCCCCEEEEEeC-CCcEEEEEC
Confidence            00001112344566666667777665   56777887755433333322 578999985  568998864 567888899


Q ss_pred             cCCceEEEEec
Q psy5768         518 YTGEEVYTLRK  528 (652)
Q Consensus       518 ~~g~~~~~~~~  528 (652)
                      .+++.+..+..
T Consensus       309 ~t~~~v~~i~~  319 (337)
T d1pbyb_         309 ETLEKKGQVDL  319 (337)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            88888877764

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.8e-07  Score=65.58  Aligned_cols=41  Identities=24%  Similarity=0.604  Sum_probs=33.8

Q ss_pred             CCCCCCCCCC--------CCcccceecCCCceEEEeCCc-cccCCCcccc
Q psy5768         236 GTNPCGVNNG--------GCAELCLYNGVSAVCACAHGV-VAQDGKSCSE  276 (652)
Q Consensus       236 ~~n~C~~~ng--------~Cs~lC~~~~~~~~C~C~~G~-l~~dg~~C~~  276 (652)
                      ++|||...++        +|+|+|++++++|+|.|+.|| |..|+++|..
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence            5678876543        468999999999999999999 6789999963

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.1e-07  Score=64.31  Aligned_cols=40  Identities=25%  Similarity=0.569  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCCCc-ccceecCCCceEEEeCCc-cccCCCccc
Q psy5768         236 GTNPCGVNNGGCA-ELCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs-~lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      ++|+|...++.|. |.|++.+++|+|.|+.|| |..++++|.
T Consensus         2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence            5799998888886 799999999999999998 677999884

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-07  Score=63.96  Aligned_cols=40  Identities=20%  Similarity=0.458  Sum_probs=35.4

Q ss_pred             CCCCCCCCCCCCcc-cceecCCCceEEEeCCc-cccCCCccc
Q psy5768         236 GTNPCGVNNGGCAE-LCLYNGVSAVCACAHGV-VAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~-l~~dg~~C~  275 (652)
                      ++|||+..++.|.| .|++.+++|+|.|++|| +..|+++|.
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence            36899998999988 99999999999999998 667898884

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.16  E-value=0.00011  Score=73.61  Aligned_cols=147  Identities=10%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             ceeeeEEEc--cC-CEEEEEeC--CCCeEEEEEcCCCCCcc--EEEEEeCCCCCceEEEEeCCCCEEEEEecCCC-----
Q psy5768         357 SVEGLAYEY--VH-NYLYWTCN--NDATINKIDLDSPKAQR--IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-----  424 (652)
Q Consensus       357 ~~~glAvDw--~~-~~LYwtd~--~~~~I~~~~~~~~~~~~--~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~-----  424 (652)
                      .|.||.+-.  .+ ..||..+-  ...+|++.+++......  ...+....+..|.+|++.. .|.+|+|+....     
T Consensus        98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~  176 (340)
T d1v04a_          98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  176 (340)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHH
T ss_pred             eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhh
Confidence            799998732  22 26788774  45678877775433221  1222335668899999998 577899964321     


Q ss_pred             --------CCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEec--CCCCceeE
Q psy5768         425 --------LPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK--ISPLHPFD  494 (652)
Q Consensus       425 --------~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~--~~~~~p~g  494 (652)
                              .+.......++...+++. +++..||||+++++++.||+++....+|.++++++...-....  .-...|-.
T Consensus       177 ~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDN  255 (340)
T d1v04a_         177 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN  255 (340)
T ss_dssp             HHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred             hhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCc
Confidence                    123445556776665554 5788999999999999999999999999999998764322211  12357899


Q ss_pred             EEEeC--CEEEEE
Q psy5768         495 MAVYG--EFIFWT  505 (652)
Q Consensus       495 lav~~--~~lYwt  505 (652)
                      |.+++  ++++.+
T Consensus       256 i~~d~~~g~lwva  268 (340)
T d1v04a_         256 ISVDPVTGDLWVG  268 (340)
T ss_dssp             EEECTTTCCEEEE
T ss_pred             cEEecCCCEEEEE
Confidence            99873  455544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.13  E-value=0.00028  Score=73.06  Aligned_cols=194  Identities=14%  Similarity=0.050  Sum_probs=131.9

Q ss_pred             EEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEE
Q psy5768         328 LFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGI  407 (652)
Q Consensus       328 lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~I  407 (652)
                      ++++....++|..+++........+..-..|.++++.+.++.||.+.. .+.|.+.++...+  ...+..+.....|+++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~--~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKE--PTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSS--CCEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCC--ceEEEEEecCCCCCCe
Confidence            345666667777777665444333333357999999999999998865 5789999986533  2334444556789999


Q ss_pred             EEeC----CCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----------CCCCCceEEEecCCCEEEEEeCCCCeEE
Q psy5768         408 DIDS----CDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----------DITMPNALALDHQAEKLFWGDARLDKIE  472 (652)
Q Consensus       408 avdp----~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----------~l~~P~glaiD~~~~~LYw~D~~~~~I~  472 (652)
                      ++.|    ...+||.+.....  .|...+.........+..           .-..+.+++.++.+.++||+-...+.|.
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~--~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETT--EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             EEecccCCCCCEEEEEcCCCC--eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            9876    4568999887643  555555544333222211           1123457888999999999998899999


Q ss_pred             EEecCCCce-EEE-ecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         473 RCDYDGTNR-IVL-SKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       473 ~~~ldG~~~-~~l-~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      .+++..... ++. +.. ...|.++++.  +.++|.+....+.|..++..++.....+.
T Consensus       189 ~~d~~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEccCCCcceEEEEcc-cCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            999865443 322 222 3678999987  45899999888888888887766655554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.06  E-value=0.00014  Score=75.15  Aligned_cols=191  Identities=16%  Similarity=0.118  Sum_probs=124.3

Q ss_pred             cCCCeEEEeecccccEEEEeccCCcceEEe--eccCceeeeEEEccCCEEEEEeCCCCeE------------------EE
Q psy5768         323 YKRKTLFYSDIQKGTINSVFFNGSNHRVLL--ERQGSVEGLAYEYVHNYLYWTCNNDATI------------------NK  382 (652)
Q Consensus       323 ~~~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I------------------~~  382 (652)
                      +..++||++|..+++|.+++++......++  .....|.|+++...++.+|.+......+                  .+
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            336789999999999999998865444444  4456899999999999999987654443                  34


Q ss_pred             EEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCce------------EE---------------EeecC
Q psy5768         383 IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSI------------QR---------------AFFSG  435 (652)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I------------~r---------------~~ldG  435 (652)
                      ++.....    ..........|..++++|..+++|++..+.+....            ..               ..+.+
T Consensus       161 iD~~t~~----v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         161 IDAETMD----VAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EETTTCS----EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             ecCccce----eeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            5544322    11111224689999999999999999876432110            00               01111


Q ss_pred             CCceEEEE----------cCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCC-------C--ceEEEec-CC-CCceeE
Q psy5768         436 FGTESIIT----------TDITMPNALALDHQAEKLFWGDARLDKIERCDYDG-------T--NRIVLSK-IS-PLHPFD  494 (652)
Q Consensus       436 ~~~~~l~~----------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG-------~--~~~~l~~-~~-~~~p~g  494 (652)
                      ....++..          ..-..|.|+++++++++||.+....+.+..++++-       .  .+..+.. .. ...|..
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            11111111          11357999999999999999999999999999642       1  1122211 11 234666


Q ss_pred             EEEeC-CEEEEEcCCCCeEEEEEc
Q psy5768         495 MAVYG-EFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       495 lav~~-~~lYwtd~~~~~I~~~~k  517 (652)
                      -++++ ++.|-+-.-...|.+-+.
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceecCCceEEEcccccceEEEecc
Confidence            67774 688888777777766553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.05  E-value=0.0036  Score=60.37  Aligned_cols=134  Identities=10%  Similarity=-0.017  Sum_probs=88.9

Q ss_pred             EEecCCCCeEEEEecCCCee-EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCc-cEEEEeCC
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTK-RETVVSQK   81 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~-~~~v~~~~   81 (652)
                      +|+....+.|.++|++...+ .++.. .    ..-..|.+|+++|.+++||++.  ...+.|..+++.... ...+-...
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~-~----~~~~~~~~i~~spDg~~l~v~~--~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITI-A----DAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEEC-T----TCTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCB
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEEC-C----CCCCCccEEEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecCC
Confidence            34444568999999996544 44432 1    1235688999999989999998  777899999987433 22221111


Q ss_pred             ---CcCCccCCCCcEEEEccCCcEEEEeC-----------CCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEE
Q psy5768          82 ---KYPAVTACNLHIAVDWIAQNIYWSDP-----------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFW  147 (652)
Q Consensus        82 ---~~~~p~~~~~~lavDw~~~~lY~~d~-----------~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lyw  147 (652)
                         ....+.    ++++.+..+.+|++..           ....+.+.+.........+.. ...|+++++.|...+||.
T Consensus        77 ~~~~~~~~~----~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          77 PEERVKSLF----GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             TTEEEECTT----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             Cccccccee----eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEE
Confidence               012355    9999998999998864           245566666655444333333 357889999987778887


Q ss_pred             Ee
Q psy5768         148 SE  149 (652)
Q Consensus       148 td  149 (652)
                      ++
T Consensus       152 ~~  153 (337)
T d1pbyb_         152 LG  153 (337)
T ss_dssp             ES
T ss_pred             Ec
Confidence            64

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.05  E-value=0.0078  Score=59.40  Aligned_cols=180  Identities=9%  Similarity=-0.041  Sum_probs=108.2

Q ss_pred             ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEE--eC--CCCCceEEEEeCCCCEEEEEecCCCCCceE
Q psy5768         354 RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVR--LG--QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ  429 (652)
Q Consensus       354 ~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~--~~--~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~  429 (652)
                      ....|.++++.+.++.+|.+....+++.+.+....... .....  ..  ....+..++.++...+++.++.    .++.
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~  237 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG-AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS----GKIL  237 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee-EEEeeeccccCccceeeeEEECCCceEEEecCC----ceEE
Confidence            33467888999999999999998899988887653211 11111  11  1123344555554444443321    1444


Q ss_pred             EEeecCCCceEEEEc------------CCCCCceEEEecCCCEEEEEeCC---------CCeEEEEecCCCceEEEecCC
Q psy5768         430 RAFFSGFGTESIITT------------DITMPNALALDHQAEKLFWGDAR---------LDKIERCDYDGTNRIVLSKIS  488 (652)
Q Consensus       430 r~~ldG~~~~~l~~~------------~l~~P~glaiD~~~~~LYw~D~~---------~~~I~~~~ldG~~~~~l~~~~  488 (652)
                      .....+.....+...            ....+..+++.....++|++...         .+.|..++.....+...+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~  317 (373)
T d2madh_         238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG  317 (373)
T ss_pred             EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC
Confidence            444443322211111            11223467777788888887443         345666666544433333322


Q ss_pred             CCceeEEEEe--CCE-EEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEE
Q psy5768         489 PLHPFDMAVY--GEF-IFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAI  539 (652)
Q Consensus       489 ~~~p~glav~--~~~-lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~  539 (652)
                       ..|.++++.  +.+ ||.+....+.|...|..+|+.++.+...-..|..|.+.
T Consensus       318 -~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         318 -HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             -CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence             668889885  445 67788888999999999999888887544678888775

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.3e-07  Score=59.58  Aligned_cols=38  Identities=26%  Similarity=0.573  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCCcccceecCCCceEEEeCCc-cc-cCCCcc
Q psy5768         236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VA-QDGKSC  274 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~-l~-~dg~~C  274 (652)
                      ++|||+. +++|+|.|++.+++|+|.|++|| |. .+++.|
T Consensus         1 DidEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~~~~~C   40 (40)
T d1dx5i3           1 DIDECEN-GGFCSGVCHNLPGTFECICGPDSALAGQIGTDC   40 (40)
T ss_dssp             ECCHHHH-CSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred             CccccCC-CcCccCEeeCCCCCeEeECCCCCeeCCCCCCCC
Confidence            3688975 58999999999999999999998 43 356665

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.98  E-value=0.0016  Score=66.75  Aligned_cols=197  Identities=13%  Similarity=0.010  Sum_probs=130.6

Q ss_pred             eEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceE
Q psy5768         327 TLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRG  406 (652)
Q Consensus       327 ~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~  406 (652)
                      .++++....++|...++........+..-..|.+||+.+.++.||.+.. .++|.+.++....  ...+..+.....|.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~--~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKE--PTKVAEIKIGIEARS  109 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSS--CEEEEEEECCSEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCc--eeEEEEEeCCCCCcc
Confidence            3446666778888887765433333333357999999999999998865 4789999987543  234444445677889


Q ss_pred             EEEeC----CCCEEEEEecCCCCCceEEEeecCCCceEEEEc-----------CCCCCceEEEecCCCEEEEEeCCCCeE
Q psy5768         407 IDIDS----CDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT-----------DITMPNALALDHQAEKLFWGDARLDKI  471 (652)
Q Consensus       407 Iavdp----~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~-----------~l~~P~glaiD~~~~~LYw~D~~~~~I  471 (652)
                      +++.+    ...+||.+.+...  .|...+........+...           .-..+..++.......++|+....+.|
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPP--QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESS--EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEeeeecCCCCEEEEeecCCC--eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            88875    4678898876543  444333333322222211           112345677788889999999888888


Q ss_pred             EEEecCCCc-eEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEec
Q psy5768         472 ERCDYDGTN-RIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       472 ~~~~ldG~~-~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      ..++..... ..+-.......|.++++.  +.++|.+....+.+...+..+++....+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            877765433 222222234789999986  568999999999998888888877666553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.96  E-value=0.011  Score=58.19  Aligned_cols=151  Identities=9%  Similarity=-0.018  Sum_probs=89.3

Q ss_pred             CeeEEEEECCCCEEEEEeccC--CcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCC--------
Q psy5768          39 KISSIAVWPVKGKMFWSNVTK--QVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPK--------  108 (652)
Q Consensus        39 ~~~~v~~d~~~~~lyw~d~~~--~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~--------  108 (652)
                      .+..+++.|...++|.++...  ....++.++....  +.+-.-. .+.+.    ++++.+.++.||++...        
T Consensus        22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~-~~~~~----~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVN-GGFLP----NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEEe-CCCCc----cEEEcCCCCEEEEEeecCCcccccc
Confidence            456778899999999987211  1235666654322  2221111 23445    89999989999998643        


Q ss_pred             -CCEEEEEEcCCCcEEEEEeC-------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeE
Q psy5768         109 -ENVIEVARLTGQYRYVLISG-------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI  180 (652)
Q Consensus       109 -~~~I~v~~~dg~~~~~l~~~-------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl  180 (652)
                       .+.|.+.++......-.+..       ....|+.+++.+....+|...+.....+...........    .....|.++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeE
Confidence             35677787765433222211       124577888888777777776643334433333322211    123457888


Q ss_pred             EEeccCCEEEEEeCCCCcEE
Q psy5768         181 TLDLKFFSAFYRNLSKGNIH  200 (652)
Q Consensus       181 ~lD~~~~~ly~~d~~g~~~~  200 (652)
                      .+.+.+.++|+.....+...
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~  190 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEE
Confidence            88888888888665544443

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-06  Score=58.67  Aligned_cols=39  Identities=13%  Similarity=0.175  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceeeccC-Cccc
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED-NRSC  587 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~  587 (652)
                      .++|...++.|+|.|+.+++ +|+|.|+.||+|..+ ++|.
T Consensus         3 idEC~~~~~~c~~~C~Nt~G-~y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           3 VNECLDPTTCISGNCVNTPG-SYICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             CCGGGSTTSSBTSEEEEETT-EEEEECCTTCEECTTSSBEE
T ss_pred             ccccCCCCcCcCCEeECCCC-CEEEecCCCCEECCCCCccc
Confidence            47888878889999999887 699999999999988 8885

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.92  E-value=0.005  Score=59.59  Aligned_cols=92  Identities=9%  Similarity=0.011  Sum_probs=62.5

Q ss_pred             EEecCCCCeEEEEecCCCee-EEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCC-
Q psy5768           4 AVSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK-   81 (652)
Q Consensus         4 ~v~~~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~-   81 (652)
                      +|+....+.|.++|++-..+ .++...      .-..|.+|+++|.+.+||+++  ...+.|+.+++........+... 
T Consensus        11 l~~~~~~~~v~v~D~~t~~~~~t~~~~------~~~~p~~l~~spDG~~l~v~~--~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_          11 MIVTNYPNNLHVVDVASDTVYKSCVMP------DKFGPGTAMMAPDNRTAYVLN--NHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECS------SCCSSCEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEESCC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEEEcC------CCCCcceEEECCCCCEEEEEE--CCCCcEEEEeCccCeeeeeecccc
Confidence            34444567899999985544 444311      124689999999999999999  77889999998754322222221 


Q ss_pred             C----cCCccCCCCcEEEEccCCcEEEEeC
Q psy5768          82 K----YPAVTACNLHIAVDWIAQNIYWSDP  107 (652)
Q Consensus        82 ~----~~~p~~~~~~lavDw~~~~lY~~d~  107 (652)
                      .    ...|.    ++++...++.+|++..
T Consensus        83 ~~~~~~~~~~----~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          83 VPGEVGRSMY----SFAISPDGKEVYATVN  108 (346)
T ss_dssp             STTEEEECSS----CEEECTTSSEEEEEEE
T ss_pred             cccccCCceE----EEEEecCCCEEEEEec
Confidence            0    12355    9999998889998864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.86  E-value=0.00058  Score=68.21  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=110.6

Q ss_pred             CCeEEEEecCCCeeEE-EecCCCCCCCC-CCCeeEEEEECCC-C--EEEEEeccCCcceEEEEEcC--CCc---cEEEEe
Q psy5768          10 QSKIVVCNLEGEYQTT-ILSNESNDTST-LSKISSIAVWPVK-G--KMFWSNVTKQVVTIEMAFMD--GTK---RETVVS   79 (652)
Q Consensus        10 ~~~I~~~~~~g~~~~~-~~~~~~~~~~~-~~~~~~v~~d~~~-~--~lyw~d~~~~~~~I~~~~~d--gs~---~~~v~~   79 (652)
                      .+.|+++|+....... -+...++.... -=.|+||++-... +  +||+.+-.....+|..+.++  +..   +.++-.
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4788888886543221 11111111111 1268999984332 2  68888722245566655554  332   122222


Q ss_pred             CCCcCCccCCCCcEEEEccCCcEEEEeCC---------------CCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCe
Q psy5768          80 QKKYPAVTACNLHIAVDWIAQNIYWSDPK---------------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY  144 (652)
Q Consensus        80 ~~~~~~p~~~~~~lavDw~~~~lY~~d~~---------------~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~  144 (652)
                      . .+..|.    +|++.- .+.+|+|+..               .....+...+++..+++.. ++..|.+|+++|.+.+
T Consensus       147 ~-~~~~pN----Dv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~  219 (340)
T d1v04a_         147 K-LLPSVN----DIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKY  219 (340)
T ss_dssp             T-TCSSEE----EEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSE
T ss_pred             c-cccCcc----ceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCE
Confidence            3 377899    999985 6789999631               2345666777777777665 4789999999998899


Q ss_pred             EEEEecCCCCeEEEEeCCCCCcEEEEee-c-ccCceeEEEeccCCEEEE
Q psy5768         145 LFWSESGKIPLIARAGLDGKKQTILAQE-I-IMPIKDITLDLKFFSAFY  191 (652)
Q Consensus       145 lywtd~~~~~~I~~~~ldg~~~~~~~~~-~-~~~p~gl~lD~~~~~ly~  191 (652)
                      ||++++. ..+|.+..+++......... . -..|..|.+|..++.++.
T Consensus       220 lyVa~t~-~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         220 VYIAELL-AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             EEEEEGG-GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             EEEEeCC-CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence            9999986 56899999887654433222 1 356899999977666644

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.4e-06  Score=57.45  Aligned_cols=40  Identities=20%  Similarity=0.470  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       235 ~~~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .++|||+.++..|.+.|++.+++|+|.|+.||.+ ++++|.
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~-~g~~C~   42 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL-AGNECV   42 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE-SSSCEE
T ss_pred             cceeccCCcCCCCCCEeECCCCCeEeECCCCccc-CCCccc
Confidence            3689999988999999999999999999999954 677774

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.84  E-value=0.0011  Score=68.47  Aligned_cols=182  Identities=9%  Similarity=-0.061  Sum_probs=122.4

Q ss_pred             EEEecCCCCeEEEEecCC-CeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEE--Ee
Q psy5768           3 IAVSSPTQSKIVVCNLEG-EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV--VS   79 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v--~~   79 (652)
                      ++|+-...+.|.++|.+. +.+.+|..  +      ..|.+|+|+|..++||.+.  . .+.|..++++....+.+  +.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~--g------~~~~~v~fSpDG~~l~~~s--~-dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDT--G------YAVHISRLSASGRYLFVIG--R-DGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC--S------SCEEEEEECTTSCEEEEEE--T-TSEEEEEETTSSSCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC--C------CCeeEEEECCCCCEEEEEc--C-CCCEEEEEeeCCCceEEEEEe
Confidence            357777899999999985 45555543  1      3689999999999999887  3 57899999864332222  23


Q ss_pred             CCCcCCccCCCCcEEEEc----cCCcEEEEeCCCCEEEEEEcCCCcEEEEEeC-----------CCCCceeEEEcCCCCe
Q psy5768          80 QKKYPAVTACNLHIAVDW----IAQNIYWSDPKENVIEVARLTGQYRYVLISG-----------GVDQPSALAVDPESGY  144 (652)
Q Consensus        80 ~~~~~~p~~~~~~lavDw----~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~-----------~~~~P~~iavd~~~g~  144 (652)
                      .+  ..|.    ++++..    .++.||.+....+.|.+.+.........+..           ...++.+++..|.+.+
T Consensus       103 ~~--~~~~----~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         103 IG--SEAR----SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             CC--SEEE----EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             cC--CCCC----CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence            32  3466    777643    4567899988889999999765443332221           1234557788888888


Q ss_pred             EEEEecCCCCeEEEEeCCCCCcEEEEe-ecccCceeEEEeccCCEEEEEeCCCCcEEEE
Q psy5768         145 LFWSESGKIPLIARAGLDGKKQTILAQ-EIIMPIKDITLDLKFFSAFYRNLSKGNIHII  202 (652)
Q Consensus       145 lywtd~~~~~~I~~~~ldg~~~~~~~~-~~~~~p~gl~lD~~~~~ly~~d~~g~~~~~i  202 (652)
                      +||+-.. ...|...++.......+.. ..-..|.++++++.++++|....+++....+
T Consensus       177 ~~vs~~~-~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~  234 (432)
T d1qksa2         177 FIVNVKE-TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI  234 (432)
T ss_dssp             EEEEETT-TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             EEEEEcc-CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEe
Confidence            8998765 5577777765433222211 1235789999999999999987765444333

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.0031  Score=61.81  Aligned_cols=112  Identities=11%  Similarity=0.040  Sum_probs=71.2

Q ss_pred             EEECCCCEEEEEeccC--CcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCC---------CCEE
Q psy5768          44 AVWPVKGKMFWSNVTK--QVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPK---------ENVI  112 (652)
Q Consensus        44 ~~d~~~~~lyw~d~~~--~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~---------~~~I  112 (652)
                      +..|...++|+++...  ...+|+.++.+.......+..+   ...    ++|+.+.++.||+++..         .+.|
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g---~~~----~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLP----NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC---SSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC---CCC----ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            3457889999998221  2346888877644222223333   445    89999989999998642         3568


Q ss_pred             EEEEcCCCc-EEEEEeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCC
Q psy5768         113 EVARLTGQY-RYVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD  162 (652)
Q Consensus       113 ~v~~~dg~~-~~~l~~~------~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ld  162 (652)
                      .+.|+.... ...+...      -...|..+++.|..+++|+.++.....+....+.
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence            888876543 3333221      1246899999999999999887644455555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.82  E-value=0.0041  Score=60.20  Aligned_cols=102  Identities=11%  Similarity=-0.013  Sum_probs=65.8

Q ss_pred             cEEEEccCCcEEEEeCCCCEEEEEEcCCCcE-EEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEE
Q psy5768          92 HIAVDWIAQNIYWSDPKENVIEVARLTGQYR-YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA  170 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~-~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~  170 (652)
                      |+|+.. +++.+++-+..+.|.+.|++.... +++--..-..|.++++.|...+||++... .+.|...+++........
T Consensus         1 g~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~-~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           1 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-YGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEE
T ss_pred             CccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC-CCcEEEEeCccCeeeeee
Confidence            445554 334444444577899999875433 23221233579999999987889999764 467888877644333222


Q ss_pred             eec------ccCceeEEEeccCCEEEEEeCC
Q psy5768         171 QEI------IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       171 ~~~------~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ...      ...|.++++++.+++||+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecC
Confidence            211      2368899999998899886543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.82  E-value=0.00031  Score=73.18  Aligned_cols=159  Identities=13%  Similarity=0.178  Sum_probs=105.6

Q ss_pred             cceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCC-------CCceEEEEeC---CCCEE
Q psy5768         347 NHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQH-------DKPRGIDIDS---CDSRI  416 (652)
Q Consensus       347 ~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~-------~~P~~Iavdp---~~g~L  416 (652)
                      ..+++++++..|.+||+.+.+ .||+|+...++|.+++..+..  .+.+..+...       .--.+||+||   .++++
T Consensus        18 ~~~~ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~--~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i   94 (450)
T d1crua_          18 DKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (450)
T ss_dssp             CEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             EEEEEECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCc--EeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence            346677899999999999865 688999878999998765432  3444443322       1224799998   47899


Q ss_pred             EEEecCC----------CCCceEEEeecCCCc-----eEEEEc----CCCCCceEEEecCCCEEEEEeC-----------
Q psy5768         417 YWTNWNS----------HLPSIQRAFFSGFGT-----ESIITT----DITMPNALALDHQAEKLFWGDA-----------  466 (652)
Q Consensus       417 ywtd~~~----------~~~~I~r~~ldG~~~-----~~l~~~----~l~~P~glaiD~~~~~LYw~D~-----------  466 (652)
                      |++-...          ....|.|...++...     +.++..    .-+.-..|+++.+ ++||++-.           
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpD-G~LYvs~Gd~~~~~~~~~~  173 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTIGDQGRNQLAYLF  173 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEECCTTTTSGGGTT
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCC-CCEEEEecCCCcccccccc
Confidence            9863210          011366666665543     223221    1123347999865 68999832           


Q ss_pred             ---------------------CCCeEEEEecCCCce----------EEEecCCCCceeEEEEe-CCEEEEEcCCC
Q psy5768         467 ---------------------RLDKIERCDYDGTNR----------IVLSKISPLHPFDMAVY-GEFIFWTDWVI  509 (652)
Q Consensus       467 ---------------------~~~~I~~~~ldG~~~----------~~l~~~~~~~p~glav~-~~~lYwtd~~~  509 (652)
                                           ..++|.+++.||+..          ..+...++.+|++++++ .+.||.+|...
T Consensus       174 ~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G~  248 (450)
T d1crua_         174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (450)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeeccccc
Confidence                                 137899999998643          23455568999999998 67899998653

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.3e-06  Score=56.78  Aligned_cols=40  Identities=20%  Similarity=0.494  Sum_probs=34.6

Q ss_pred             CCCCCCCCCCCCcc-cceecCCCceEEEeCCccc--cCCCccc
Q psy5768         236 GTNPCGVNNGGCAE-LCLYNGVSAVCACAHGVVA--QDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~l~--~dg~~C~  275 (652)
                      ++|||+..+..|+| .|++.+++|+|.|+.||..  .++++|.
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcCC
Confidence            68999998889987 8999999999999999843  4788884

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.5e-06  Score=57.93  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             CCCCccccccCCCCceeeeccCceeeccC-CcccC
Q psy5768         555 NGNCDDICKLDETGQVVCSCFTGKVLMED-NRSCT  588 (652)
Q Consensus       555 ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d-~~C~~  588 (652)
                      +.+|+|+|+.+++ +|+|.|+.||+|..| ++|..
T Consensus        19 ~~~c~~~C~Nt~G-sY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          19 QPQCQHLCHNYVG-GYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCTTSSEEEEETT-EEEEECSTTCEECTTSSCEEC
T ss_pred             CCCccCEeEcCCC-CeEeECCCCCeECCCCCceec
Confidence            3468999999987 699999999999999 88864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.73  E-value=0.00096  Score=68.57  Aligned_cols=151  Identities=10%  Similarity=0.053  Sum_probs=100.3

Q ss_pred             EccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCce--------------E
Q psy5768         364 EYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSI--------------Q  429 (652)
Q Consensus       364 Dw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I--------------~  429 (652)
                      .+.++.||.+|...++|.+++++..+  ...++.......|.++++.|...++|++..++....+              .
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence            35599999999999999999997643  3445556677899999999988889998765432110              0


Q ss_pred             EEeecCCCceEEEEcC-CCCCceEEEecCCCEEEEEeCCCCeE--------------EEEe---------------cCCC
Q psy5768         430 RAFFSGFGTESIITTD-ITMPNALALDHQAEKLFWGDARLDKI--------------ERCD---------------YDGT  479 (652)
Q Consensus       430 r~~ldG~~~~~l~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I--------------~~~~---------------ldG~  479 (652)
                      -..+|....+++.... -..|.+++++++++++|++....+.+              ...+               +.+.
T Consensus       158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence            1124555444443221 13689999999999999997543211              1111               1111


Q ss_pred             ceEE-----------EecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEc
Q psy5768         480 NRIV-----------LSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       480 ~~~~-----------l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k  517 (652)
                      ....           .+.. ...|.|+++.  +.|+|.+....+.|..++.
T Consensus       238 ~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             CCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             CcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            1111           1121 3679999996  5699999999999888874

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.8e-06  Score=56.79  Aligned_cols=38  Identities=21%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             CCCCCCCCCCcc-ccccCCCCceeeeccCceeeccC-Cccc
Q psy5768         549 TPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMED-NRSC  587 (652)
Q Consensus       549 ~~C~~~ng~Cs~-lCl~~~~~~~~C~Cp~g~~l~~d-~~C~  587 (652)
                      +.|...++.|+| +|+.+++ +|+|.|+.||++..| ++|+
T Consensus         3 dEC~~~~~~C~~~~C~Nt~G-sy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           3 DECQRDPLLCRGGVCHNTEG-SYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             CHHHHCSSTTTTSEEEEETT-EEEEESCTTSCCCSSSCCCC
T ss_pred             cccCCCCCCCCCCEeECCCC-CeEEeCCCCCeECcCCCccC
Confidence            567667778877 8999888 699999999999988 7774

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.00091  Score=66.97  Aligned_cols=218  Identities=5%  Similarity=-0.127  Sum_probs=128.4

Q ss_pred             EEEEEcCCCeEEEeecc---------cccEEEEeccCCcceEEee--------ccCceeeeEEEccCCEEEEEeCCCCeE
Q psy5768         318 ELSYDYKRKTLFYSDIQ---------KGTINSVFFNGSNHRVLLE--------RQGSVEGLAYEYVHNYLYWTCNNDATI  380 (652)
Q Consensus       318 ~v~~D~~~~~lywsd~~---------~~~I~~~~~~g~~~~~i~~--------~~~~~~glAvDw~~~~LYwtd~~~~~I  380 (652)
                      .+++.+..+.||+++..         .+.|..++.........+.        ....|.++|+.+.++.||+++...+.|
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            46778888889988742         3457777765433222111        223688999999999999999888899


Q ss_pred             EEEEcCCCCCccEEEEEeCC------CCCceEEEEeCCCCEEEEEecCCC------------------------------
Q psy5768         381 NKIDLDSPKAQRIVVVRLGQ------HDKPRGIDIDSCDSRIYWTNWNSH------------------------------  424 (652)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~------~~~P~~Iavdp~~g~Lywtd~~~~------------------------------  424 (652)
                      .++++...+  ....+....      ...+..++..+....++|+.....                              
T Consensus       149 ~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         149 AGLSVPGAS--DDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EEEEETTTE--EEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEECCCCc--EeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            988876532  111111110      012223444443333333321110                              


Q ss_pred             ---CCceEEEeecCCCceEEEEcCC------------CCCceEEEecCCCEEEEEeCCC--------CeEEEEecCCCce
Q psy5768         425 ---LPSIQRAFFSGFGTESIITTDI------------TMPNALALDHQAEKLFWGDARL--------DKIERCDYDGTNR  481 (652)
Q Consensus       425 ---~~~I~r~~ldG~~~~~l~~~~l------------~~P~glaiD~~~~~LYw~D~~~--------~~I~~~~ldG~~~  481 (652)
                         ..+++...+++.....+.....            ..+..+++....+++|++....        .+|..+|.....+
T Consensus       227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~  306 (368)
T d1mdah_         227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT  306 (368)
T ss_dssp             ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred             EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE
Confidence               0123333333322222211110            1245789999999999984322        3577788775544


Q ss_pred             EEEecCCCCceeEEEEe--CC-EEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeEEE
Q psy5768         482 IVLSKISPLHPFDMAVY--GE-FIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAI  539 (652)
Q Consensus       482 ~~l~~~~~~~p~glav~--~~-~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~~~  539 (652)
                      ...+... ..|.++++.  ++ .||.+....+.|...|..+|+.+..+..+ ..|.+|.+.
T Consensus       307 ~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-~~P~~l~~~  365 (368)
T d1mdah_         307 SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQ  365 (368)
T ss_dssp             EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECC
T ss_pred             eEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC-CCCCEEEEe
Confidence            3322222 567888885  33 58999999999999999999887777644 458888764

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=5.7e-06  Score=55.58  Aligned_cols=37  Identities=32%  Similarity=0.574  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCc-cccccCCCCceeeeccCceeeccC-Ccc
Q psy5768         549 TPCRHLNGNCD-DICKLDETGQVVCSCFTGKVLMED-NRS  586 (652)
Q Consensus       549 ~~C~~~ng~Cs-~lCl~~~~~~~~C~Cp~g~~l~~d-~~C  586 (652)
                      |.|...++.|. |.|+.+++ +|+|.|+.||.|..+ ++|
T Consensus         4 nEC~~~~~~c~~~~C~Nt~G-sy~C~C~~Gy~l~~~~~~C   42 (43)
T d1uzka2           4 DECQELPGLCQGGKCINTFG-SFQCRCPTGYYLNEDTRVC   42 (43)
T ss_dssp             CHHHHCGGGGBTSEEEECSS-CEEEECCTTCCBCTTTCBB
T ss_pred             ccccCCCCCcCCCEEECCCC-CeEeECCCCCeECcCCCcc
Confidence            56776677775 78999888 699999999999988 777

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.43  E-value=0.0029  Score=63.59  Aligned_cols=188  Identities=16%  Similarity=0.172  Sum_probs=126.2

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEe--eccCceeeeEEEccCCEEEEEeCCC-------------------CeEEEE
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLL--ERQGSVEGLAYEYVHNYLYWTCNND-------------------ATINKI  383 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~--~~~~~~~glAvDw~~~~LYwtd~~~-------------------~~I~~~  383 (652)
                      .+.||+.|..+.+|.|++++.-....|+  .....+.|+......+..|+.....                   +.+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            4789999999999999999876555555  5667899999987778888876433                   234567


Q ss_pred             EcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCC--------------------ceEE-------------
Q psy5768         384 DLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP--------------------SIQR-------------  430 (652)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~--------------------~I~r-------------  430 (652)
                      +.+..    +..........|..++++|..+++|+|...+...                    +|+.             
T Consensus       179 D~~tm----~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         179 DADKW----EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             ETTTT----EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             ecCCc----eEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            76543    2222222235789999999999999997654311                    0000             


Q ss_pred             EeecCCC-----ceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecC--------CCc-eEEEecC-C-CCceeE
Q psy5768         431 AFFSGFG-----TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD--------GTN-RIVLSKI-S-PLHPFD  494 (652)
Q Consensus       431 ~~ldG~~-----~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ld--------G~~-~~~l~~~-~-~~~p~g  494 (652)
                      .-+|+..     ....+.. -..|.|+.++++++.+|.+......+..+|+.        +.+ +.++... . .-.|..
T Consensus       255 ~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            0112221     1111211 25799999999999999999888999999984        322 2222221 1 357888


Q ss_pred             EEEeC-CEEEEEcCCCCeEEEEEc
Q psy5768         495 MAVYG-EFIFWTDWVIHAVLRANK  517 (652)
Q Consensus       495 lav~~-~~lYwtd~~~~~I~~~~k  517 (652)
                      -++++ ++.|-|-.-...|.+-+.
T Consensus       334 t~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cccCCCceEEEEeeccceEEEEec
Confidence            88884 689999888888876654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.41  E-value=0.022  Score=56.28  Aligned_cols=90  Identities=7%  Similarity=0.022  Sum_probs=62.3

Q ss_pred             EEEEEcCCCeEEEeeccc--------ccEEEEeccCCcceEEeeccCceeeeEEEccCC-EEEEEeCCCCeEEEEEcCCC
Q psy5768         318 ELSYDYKRKTLFYSDIQK--------GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHN-YLYWTCNNDATINKIDLDSP  388 (652)
Q Consensus       318 ~v~~D~~~~~lywsd~~~--------~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~-~LYwtd~~~~~I~~~~~~~~  388 (652)
                      .+++.+..+++|+.....        .+|..++.........+..-..|.+|++.+.++ .||.+....++|.+++... 
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-  346 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-  346 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-
Confidence            467788888899875322        346666665433222223334788999999886 5899999889999999754 


Q ss_pred             CCccEEEEEeCCCCCceEEEEeC
Q psy5768         389 KAQRIVVVRLGQHDKPRGIDIDS  411 (652)
Q Consensus       389 ~~~~~~~~~~~~~~~P~~Iavdp  411 (652)
                         .+.+-.+.....|.+|+|-+
T Consensus       347 ---gk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         347 ---DQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             ---CEEEEECCCCSCCCEEECCC
T ss_pred             ---CCEEEEEECCCCCCEEEEec
Confidence               34555555567899999854

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.4e-05  Score=50.22  Aligned_cols=38  Identities=18%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceeeccCCccc
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC  587 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~  587 (652)
                      .++|...+..|.+.|+.+++ +|.|.|++||++. .++|.
T Consensus         5 idEC~~~~~~~~~~C~Nt~G-sy~C~C~~Gy~~~-g~~C~   42 (43)
T d1emoa1           5 MDECKEPDVCKHGQCINTDG-SYRCECPFGYILA-GNECV   42 (43)
T ss_dssp             CCSSSSTTSCSSSCCCCCSS-CCCCCCCTTEEES-SSCEE
T ss_pred             eeccCCcCCCCCCEeECCCC-CeEeECCCCcccC-CCccc
Confidence            47888777888999999887 6999999999983 35664

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=2.8e-05  Score=50.70  Aligned_cols=32  Identities=22%  Similarity=0.545  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeecc
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLME  582 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~  582 (652)
                      +.|.. +++|+|+|+.+++ +|+|.|+.||.|..
T Consensus         3 dEC~~-~~~C~~~C~N~~G-sy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           3 DECEN-GGFCSGVCHNLPG-TFECICGPDSALAG   34 (40)
T ss_dssp             CHHHH-CSSCSSEEEECSS-SEEEEECSSSSCEE
T ss_pred             cccCC-CcCccCEeeCCCC-CeEeECCCCCeeCC
Confidence            55654 5789999999888 69999999999974

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=8.3e-05  Score=49.75  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCCcc-ccccCCCCceeeeccCceeecc-C-Cccc
Q psy5768         548 KTPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLME-D-NRSC  587 (652)
Q Consensus       548 ~~~C~~~ng~Cs~-lCl~~~~~~~~C~Cp~g~~l~~-d-~~C~  587 (652)
                      .+.|...+..|.| .|..+++ +|+|.|+.||.+.. + ++|+
T Consensus         3 idEC~~~~~~C~~~~C~Nt~G-sy~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           3 IDECRISPDLCGRGQCVNTPG-DFECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCTTTTCSSTTTTSCEEEETT-EEEECCCSSEEECTTTSSSEE
T ss_pred             ccccCCCCCCCCCCEeEcCCC-CeEEeCCCCCccCCCCCCcCC
Confidence            4788887788877 8999887 69999999999863 4 6663

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.06  E-value=0.025  Score=55.78  Aligned_cols=189  Identities=10%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             CeEEEeecccccEEEEeccCCcceEEeeccCceeee------EEEccC-CEEEEEeCC--CCeEEEEEcCCCCCccEEEE
Q psy5768         326 KTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL------AYEYVH-NYLYWTCNN--DATINKIDLDSPKAQRIVVV  396 (652)
Q Consensus       326 ~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~gl------AvDw~~-~~LYwtd~~--~~~I~~~~~~~~~~~~~~~~  396 (652)
                      ..|+=+|...+ |+..+++|...+.+  ..+++.++      .++-.. ..++.++..  +.+|.+..+++.......+.
T Consensus        41 SlI~gTdK~~G-l~vYdL~G~~l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          41 SKLITTNKKSG-LAVYSLEGKMLHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             CEEEEEETTSC-CEEEETTCCEEEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cEEEEEcCcCC-EEEEcCCCcEEEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            34444555443 67777776544333  12222222      221111 124455553  34565555544322111100


Q ss_pred             -----EeCCCCCceEEEE--eCCCCEEEEEecCCCCCceEEEee--cCCCc--eEEEEc--CCCCCceEEEecCCCEEEE
Q psy5768         397 -----RLGQHDKPRGIDI--DSCDSRIYWTNWNSHLPSIQRAFF--SGFGT--ESIITT--DITMPNALALDHQAEKLFW  463 (652)
Q Consensus       397 -----~~~~~~~P~~Iav--dp~~g~Lywtd~~~~~~~I~r~~l--dG~~~--~~l~~~--~l~~P~glaiD~~~~~LYw  463 (652)
                           ....+..|.||++  +|..|.+|..-.+.. +.++...+  ++...  ..++.+  .-..+.|+++|...++||.
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~-G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE-GEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCC-ceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence                 1134567899998  788785543322222 35555444  44332  222221  1235679999999999999


Q ss_pred             EeCCCCeEEEEecC---CCceEEEecCC----CCceeEEEEe-----CCEEEEEcCCCCeEEEEEccC
Q psy5768         464 GDARLDKIERCDYD---GTNRIVLSKIS----PLHPFDMAVY-----GEFIFWTDWVIHAVLRANKYT  519 (652)
Q Consensus       464 ~D~~~~~I~~~~ld---G~~~~~l~~~~----~~~p~glav~-----~~~lYwtd~~~~~I~~~~k~~  519 (652)
                      ++... .|++++++   +..+..+....    ...|-||+++     ++||..|+.+.++....+..+
T Consensus       197 sEE~~-Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         197 AEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EETTT-EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             ecCcc-ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            98864 68888876   33455443321    3579999987     249999999888766555543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.081  Score=50.79  Aligned_cols=205  Identities=9%  Similarity=-0.033  Sum_probs=121.6

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe-eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccE
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL-ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI  393 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~-~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~  393 (652)
                      .+..+++++.+++|++..  .+.|+..+++......++ .....+..|++.+.++.|. +-...++|.+-++........
T Consensus        19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~la-tg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA-SGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEESSSTTCCEE
T ss_pred             CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEe-ccccCceEeeeeeeccccccc
Confidence            355688999999988875  345777777654444444 4456789999998776664 555568888888765432122


Q ss_pred             EEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEE
Q psy5768         394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER  473 (652)
Q Consensus       394 ~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  473 (652)
                      ..+. .......+|+.+|...+|...-.+... .+....++-......+.........+++.+.++.++.+-...+.|..
T Consensus        96 ~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~-~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          96 TTIP-VFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEE-CSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccc-cccCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            2222 233567899999977766665433221 33333444322211111122345688888877777776555667888


Q ss_pred             EecCCCceEEEecCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEE
Q psy5768         474 CDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYT  525 (652)
Q Consensus       474 ~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~  525 (652)
                      .++.................++++.  +.+|+... ..+.|...+..++.....
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccccccccCcccccccccc-cccccccccccccccccc
Confidence            8887665555544332345677775  34444433 345565556655554433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.04  E-value=0.048  Score=50.87  Aligned_cols=195  Identities=10%  Similarity=0.047  Sum_probs=110.3

Q ss_pred             CCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC-----CeEEEEEcCCCCCccEEEEE--
Q psy5768         325 RKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND-----ATINKIDLDSPKAQRIVVVR--  397 (652)
Q Consensus       325 ~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~-----~~I~~~~~~~~~~~~~~~~~--  397 (652)
                      .++|.|+..  +.|+.++++|+..+.|..+.+...+.++.+.++.|+|+....     ..|+++++.+..  .+.+..  
T Consensus        12 G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~--~~~lt~~~   87 (281)
T d1k32a2          12 GDRIIFVCC--DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--IKRITYFS   87 (281)
T ss_dssp             TTEEEEEET--TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--EEECCCCC
T ss_pred             CCEEEEEeC--CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc--eEEeeecC
Confidence            445555432  457777777776666665555667788888899998864321     247788876532  111110  


Q ss_pred             ---eCCCCCceEEEEeCCCCEEEEEecCCCC---CceEEEeecCCCceE-----------------EEEcCC--------
Q psy5768         398 ---LGQHDKPRGIDIDSCDSRIYWTNWNSHL---PSIQRAFFSGFGTES-----------------IITTDI--------  446 (652)
Q Consensus       398 ---~~~~~~P~~Iavdp~~g~Lywtd~~~~~---~~I~r~~ldG~~~~~-----------------l~~~~l--------  446 (652)
                         ..........+..|....|+++......   ..+.....++...+.                 +.....        
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGY  167 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTC
T ss_pred             CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeee
Confidence               0112345677888888888887654321   123333333221110                 000000        


Q ss_pred             ----------------------CCCceEEEecCCCEEEEEeC--CCCeEEEEecCCCceEEEecCCCCceeEEEEeCCEE
Q psy5768         447 ----------------------TMPNALALDHQAEKLFWGDA--RLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFI  502 (652)
Q Consensus       447 ----------------------~~P~glaiD~~~~~LYw~D~--~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~~~l  502 (652)
                                            ............+.+++...  ....|+.++++|...+.+.......+..++.++..|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I  247 (281)
T d1k32a2         168 RGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRI  247 (281)
T ss_dssp             CSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCE
T ss_pred             ccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEE
Confidence                                  00000111122456666543  345799999999988877654434455677888899


Q ss_pred             EEEcCCCCeEEEEEccCCceEEE
Q psy5768         503 FWTDWVIHAVLRANKYTGEEVYT  525 (652)
Q Consensus       503 Ywtd~~~~~I~~~~k~~g~~~~~  525 (652)
                      +|+.  .+.|+.++..+|+..++
T Consensus       248 ~f~~--~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         248 LFSK--GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEE--TTEEEEECTTTCCEEEC
T ss_pred             EEEe--CCEEEEEECCCCCEEEe
Confidence            9865  45799999877765444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.04  E-value=0.019  Score=55.65  Aligned_cols=170  Identities=11%  Similarity=0.064  Sum_probs=115.3

Q ss_pred             CCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCC
Q psy5768          10 QSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTAC   89 (652)
Q Consensus        10 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~   89 (652)
                      .+.|++.++++.....+. +       -..+.+++|+|..++|+++-- .....|+.++.++...+.+ ... ...+.  
T Consensus        23 ~g~v~v~d~~~~~~~~~~-~-------~~~v~~~~~spDg~~l~~~~~-~~g~~v~v~d~~~~~~~~~-~~~-~~~v~--   89 (360)
T d1k32a3          23 RGQAFIQDVSGTYVLKVP-E-------PLRIRYVRRGGDTKVAFIHGT-REGDFLGIYDYRTGKAEKF-EEN-LGNVF--   89 (360)
T ss_dssp             TTEEEEECTTSSBEEECS-C-------CSCEEEEEECSSSEEEEEEEE-TTEEEEEEEETTTCCEEEC-CCC-CCSEE--
T ss_pred             CCeEEEEECCCCcEEEcc-C-------CCCEEEEEECCCCCEEEEEEc-CCCCEEEEEECCCCcEEEe-eCC-CceEE--
Confidence            579999999988776653 2       247899999999888887540 2334688888877654443 334 45667  


Q ss_pred             CCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCC--------CCeEEEEeC
Q psy5768          90 NLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK--------IPLIARAGL  161 (652)
Q Consensus        90 ~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~--------~~~I~~~~l  161 (652)
                        .+++.+.++.|.... ..+.+.+.++++.....+..........+++.|...+|.++....        ...+...++
T Consensus        90 --~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~  166 (360)
T d1k32a3          90 --AMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  166 (360)
T ss_dssp             --EEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             --eeeecccccccceec-cccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence              888888766666655 567888888888777666666556778999999888888775321        223555556


Q ss_pred             CCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         162 DGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       162 dg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      .+.....+.. .-....++++.+.+++|++...++
T Consensus       167 ~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~~  200 (360)
T d1k32a3         167 EGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRS  200 (360)
T ss_dssp             TTTEEEECSC-SSSBEEEEEECTTSCEEEEEESCC
T ss_pred             ccCceeeecc-cccccccccccCCCCEEEEEeCCC
Confidence            5543333222 223456778888888888876653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.98  E-value=0.014  Score=56.94  Aligned_cols=169  Identities=8%  Similarity=-0.005  Sum_probs=96.3

Q ss_pred             ceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCC
Q psy5768         357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF  436 (652)
Q Consensus       357 ~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~  436 (652)
                      ....+++...++.+|+.....+.+.+.+.........        ......+..+..+.+.|+..+   .+++.+.+++.
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~  226 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE--------FLINHPAYSQKAGRLVWPTYT---GKIHQIDLSSG  226 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS--------CBCSCCEEETTTTEEEEEBTT---SEEEEEECTTS
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccceec--------ceeeeccccCCCCeEEEecCC---CeEEEEecCCC
Confidence            4455778888888888877777666665433221100        001112233333444443322   14444444443


Q ss_pred             CceEEEEcC------------CCCCceEEEecCCCEEEEEeCC---------CCeEEEEecCCCceEEEecCCCCceeEE
Q psy5768         437 GTESIITTD------------ITMPNALALDHQAEKLFWGDAR---------LDKIERCDYDGTNRIVLSKISPLHPFDM  495 (652)
Q Consensus       437 ~~~~l~~~~------------l~~P~glaiD~~~~~LYw~D~~---------~~~I~~~~ldG~~~~~l~~~~~~~p~gl  495 (652)
                      ....+-...            ...+..+++.....++||+...         .+.|..+++....+...+..+ ..|.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~  305 (355)
T d2bbkh_         227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSI  305 (355)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEE
T ss_pred             cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEE
Confidence            322211100            1234568999999999998432         246788887754433222222 568889


Q ss_pred             EEe--CC-EEEEEcCCCCeEEEEEccCCceEEEEecccCCcceeE
Q psy5768         496 AVY--GE-FIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIV  537 (652)
Q Consensus       496 av~--~~-~lYwtd~~~~~I~~~~k~~g~~~~~~~~~~~~p~~i~  537 (652)
                      ++.  +. .+|.+....+.|...|..+|+.++.+..--..|.-|.
T Consensus       306 a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         306 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred             EEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence            886  33 4788888889999999999998887763224565554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.96  E-value=0.044  Score=53.97  Aligned_cols=162  Identities=20%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             EEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEEC----CC---CEEEEEeccCC--cceEEEEEcCCCc
Q psy5768           3 IAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP----VK---GKMFWSNVTKQ--VVTIEMAFMDGTK   73 (652)
Q Consensus         3 i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~----~~---~~lyw~d~~~~--~~~I~~~~~dgs~   73 (652)
                      ++++.-....|+++|++|+.+..+..         .++-.||+-+    ..   ..++.++  +.  ..+|..+..++..
T Consensus        42 lI~gTdK~~Gl~vYdL~G~~l~~~~~---------Gr~NNVDvr~~~~l~~~~~di~vasn--R~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGKMLHSYHT---------GKLNNVDIRYDFPLNGKKVDIAAASN--RSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             EEEEEETTSCCEEEETTCCEEEECCS---------SCEEEEEEEEEEEETTEEEEEEEEEE--CCTTTCEEEEEEEETTT
T ss_pred             EEEEEcCcCCEEEEcCCCcEEEeccc---------CCcCccccccccccCCcceEEEEEeC--CcCcceeEEEEEecCcc
Confidence            44444455669999999998866532         3455555432    11   2356676  43  3466555555432


Q ss_pred             --cEEEE------eCCCcCCccCCCCcEEE--EccCCcEE-EEeCCCCEEEEEEc--C--CCcEEEEEeC--CCCCceeE
Q psy5768          74 --RETVV------SQKKYPAVTACNLHIAV--DWIAQNIY-WSDPKENVIEVARL--T--GQYRYVLISG--GVDQPSAL  136 (652)
Q Consensus        74 --~~~v~------~~~~~~~p~~~~~~lav--Dw~~~~lY-~~d~~~~~I~v~~~--d--g~~~~~l~~~--~~~~P~~i  136 (652)
                        ...+.      ... +..|-    |+++  +..++.+| ++-...+.++...+  +  |.....++..  .-.++.+.
T Consensus       111 ~~l~~~~~~~~p~~~~-~~~vY----Glc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGC  185 (353)
T d1h6la_         111 GTLQSITDPNRPIASA-IDEVY----GFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGM  185 (353)
T ss_dssp             TEEEECSCSSSCEECS-SSSCC----CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEE
T ss_pred             cccccccccccccccc-cCcce----EEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceE
Confidence              22221      112 33456    9998  77888777 34445677765543  2  3332223221  23588999


Q ss_pred             EEcCCCCeEEEEecCCCCeEEEEeCC--CC-CcEEEEeec----ccCceeEEE
Q psy5768         137 AVDPESGYLFWSESGKIPLIARAGLD--GK-KQTILAQEI----IMPIKDITL  182 (652)
Q Consensus       137 avd~~~g~lywtd~~~~~~I~~~~ld--g~-~~~~~~~~~----~~~p~gl~l  182 (652)
                      ++|..++.||.++-  ...|++..++  +. ....+....    ...|.||||
T Consensus       186 VvDde~~~LyisEE--~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlai  236 (353)
T d1h6la_         186 AADDEYGSLYIAEE--DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTI  236 (353)
T ss_dssp             EEETTTTEEEEEET--TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEE
T ss_pred             EEeCCCCcEEEecC--ccceEEEEeccCCCccceeeecccCccccCCccccEE
Confidence            99999999999985  4578988765  22 333332221    357888887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.87  E-value=0.046  Score=52.71  Aligned_cols=178  Identities=8%  Similarity=0.003  Sum_probs=109.4

Q ss_pred             EEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCC-CeEEEEEcCCCCCccEEEEE
Q psy5768         319 LSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND-ATINKIDLDSPKAQRIVVVR  397 (652)
Q Consensus       319 v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~-~~I~~~~~~~~~~~~~~~~~  397 (652)
                      -+|.+..++++-+.. .+.|+..++++.....+ ..-..+..+++.+.++.|+++.... ..|.+.++.+.    +....
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~----~~~~~   81 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG----KAEKF   81 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC----CEEEC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC----cEEEe
Confidence            445554443333322 24566666555433332 2334688999999999998876554 35777777552    22222


Q ss_pred             eCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCC---------C
Q psy5768         398 LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDAR---------L  468 (652)
Q Consensus       398 ~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~---------~  468 (652)
                      ......+.+++++|...+|......   ..+....+++.....+....-.....+++.+.+++|.++...         .
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eCCCceEEeeeecccccccceeccc---cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            3455778899999988788776554   277778888877666665544556789999999999887432         2


Q ss_pred             CeEEEEecCCCceEEEecCCCCceeEEEEe--CCEEEEEc
Q psy5768         469 DKIERCDYDGTNRIVLSKISPLHPFDMAVY--GEFIFWTD  506 (652)
Q Consensus       469 ~~I~~~~ldG~~~~~l~~~~~~~p~glav~--~~~lYwtd  506 (652)
                      ..+...++.+.....+.... ....++++.  +.+|++..
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSS-SBEEEEEECTTSCEEEEEE
T ss_pred             cceeeeccccCceeeecccc-cccccccccCCCCEEEEEe
Confidence            24666677665544443322 334445543  45777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.36  Score=44.29  Aligned_cols=174  Identities=13%  Similarity=0.071  Sum_probs=99.9

Q ss_pred             eEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCC
Q psy5768          12 KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNL   91 (652)
Q Consensus        12 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~   91 (652)
                      .|+++|.+|.....+....       .....-++.|..++|.|+........++....++...+.+...  .....    
T Consensus        20 ~l~i~d~dG~~~~~l~~~~-------~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----   86 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNG----   86 (269)
T ss_dssp             EEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC--SSCEE----
T ss_pred             EEEEEcCCCCCcEEEecCC-------CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee--ecccc----
Confidence            5999999999998887532       3455678999999998776333455788888888776665443  23444    


Q ss_pred             cEEEEccCCcEEEEeCCC--CEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEeCCCCCcEE
Q psy5768          92 HIAVDWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTI  168 (652)
Q Consensus        92 ~lavDw~~~~lY~~d~~~--~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~-~~~~~I~~~~ldg~~~~~  168 (652)
                      .....+.+..|.+.....  ..+............... ...........+....++++.. .....|.+..+++.....
T Consensus        87 ~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~  165 (269)
T d2hqsa1          87 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR  165 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE
T ss_pred             cceecCCCCeeeEeeecCCccceeecccccccceeeee-ccccccccccccccccceecccccCCceEeeeeccccccee
Confidence            555555555555543222  233333322222222222 1222333344445556666643 234578888888776654


Q ss_pred             EEeecccCceeEEEeccCCEEEEEeCCCCcEE
Q psy5768         169 LAQEIIMPIKDITLDLKFFSAFYRNLSKGNIH  200 (652)
Q Consensus       169 ~~~~~~~~p~gl~lD~~~~~ly~~d~~g~~~~  200 (652)
                      +.... .......+.+.+..|++...+++...
T Consensus       166 ~~~~~-~~~~~~~~spdg~~~~~~~~~~~~~~  196 (269)
T d2hqsa1         166 ITWEG-SQNQDADVSSDGKFMVMVSSNGGQQH  196 (269)
T ss_dssp             CCCSS-SEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             eeccc-ccccccccccccceeEEEeecCCcee
Confidence            43322 23334466667777777666554443

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0009  Score=43.33  Aligned_cols=20  Identities=30%  Similarity=0.871  Sum_probs=18.1

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ++|++++|+|.||+||+.++
T Consensus         1 rtC~~~~f~C~~g~CI~~~~   20 (39)
T d2fcwb1           1 KTCSQAEFRCHDGKCISRQF   20 (39)
T ss_dssp             CCCCTTEEECTTSCEEEGGG
T ss_pred             CcCCCCCEEcCCCCEEcchh
Confidence            47999999999999999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.5  Score=43.29  Aligned_cols=222  Identities=9%  Similarity=0.027  Sum_probs=127.1

Q ss_pred             ceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeeccc--ccEEEEeccCCcceEEeeccCceeeeEEEc
Q psy5768         288 RIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQK--GTINSVFFNGSNHRVLLERQGSVEGLAYEY  365 (652)
Q Consensus       288 ~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~--~~I~~~~~~g~~~~~i~~~~~~~~glAvDw  365 (652)
                      .|+.++. |+.+..   ......   ..+...++.+..++|.++....  ..++....++...+.+.............+
T Consensus        20 ~l~i~d~-dG~~~~---~l~~~~---~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDY-DGYNQF---VVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEEET-TSCSCE---EEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred             EEEEEcC-CCCCcE---EEecCC---CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC
Confidence            3556665 555422   222222   3345678999999987765433  357777777777666666666777888888


Q ss_pred             cCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcC
Q psy5768         366 VHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTD  445 (652)
Q Consensus       366 ~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~  445 (652)
                      .++.|.+.....+............  ..............-...+....++++........|++..+++.....+.. .
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~-~  169 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-E  169 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-S
T ss_pred             CCCeeeEeeecCCccceeecccccc--cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeec-c
Confidence            8988887665444333222222221  111111222333344555666667776544334588999888876655443 2


Q ss_pred             CCCCceEEEecCCCEEEEEeCCC--CeEEEEecCCCceEEEecCCCCceeEEEE--eCCEEEEEcCC--CCeEEEEEccC
Q psy5768         446 ITMPNALALDHQAEKLFWGDARL--DKIERCDYDGTNRIVLSKISPLHPFDMAV--YGEFIFWTDWV--IHAVLRANKYT  519 (652)
Q Consensus       446 l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~ldG~~~~~l~~~~~~~p~glav--~~~~lYwtd~~--~~~I~~~~k~~  519 (652)
                      .......++.+.++.|++.....  ..|...+..+...+.+....  .-....+  ++.+|+++...  ...|+.++..+
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccceEeecCc--cccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            22233556777888888875543  46777777777665554322  1122333  36678665433  23567777654


Q ss_pred             Cc
Q psy5768         520 GE  521 (652)
Q Consensus       520 g~  521 (652)
                      +.
T Consensus       248 ~~  249 (269)
T d2hqsa1         248 RF  249 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0016  Score=43.00  Aligned_cols=37  Identities=24%  Similarity=0.664  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCCcc--cceecCCCceEEEeCCccccCCCccc
Q psy5768         236 GTNPCGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      ++++|......|.+  .|+....+|+|.|++||.   |+.|.
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~---G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT---GPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE---STTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCc---CCCCc
Confidence            46778765566765  788888899999999984   55664

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0013  Score=41.59  Aligned_cols=33  Identities=24%  Similarity=0.633  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccC
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMED  583 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d  583 (652)
                      .||..  ..|++-|.+...+.|+|.|.+||.-..|
T Consensus         5 DPCf~--~~CE~qCqP~~~~~Y~CiCaeGFaP~p~   37 (43)
T d1dx5i1           5 DPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH   37 (43)
T ss_dssp             CGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT
T ss_pred             ccccC--CCcceeeeeCCCCcceEEeccccccCCC
Confidence            68875  3699999999888999999999998877

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0015  Score=42.13  Aligned_cols=19  Identities=42%  Similarity=1.085  Sum_probs=17.7

Q ss_pred             CCCCCeeecCCCCcccCCC
Q psy5768         633 DCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +|++++|+|.||+||+.++
T Consensus         2 sC~~~~f~C~~g~CI~~~~   20 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSR   20 (39)
T ss_dssp             CCCTTEEECSSSCEEETTT
T ss_pred             CCCCCceEeCCCCeEChhh
Confidence            6899999999999999886

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.00093  Score=43.22  Aligned_cols=19  Identities=32%  Similarity=0.899  Sum_probs=17.4

Q ss_pred             CCCCCeeecCCCCcccCCC
Q psy5768         633 DCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +|++++|+|.||+|||.++
T Consensus         2 tC~~~~f~C~~g~CI~~~~   20 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLW   20 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGG
T ss_pred             ccCCCceEcCCCCeEChhh
Confidence            5899999999999999875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.86  E-value=0.65  Score=42.48  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=54.9

Q ss_pred             CCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCC---cceEEEEEcCCCccEEEEeCC-----
Q psy5768          10 QSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ---VVTIEMAFMDGTKRETVVSQK-----   81 (652)
Q Consensus        10 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~---~~~I~~~~~dgs~~~~v~~~~-----   81 (652)
                      .+.|++.+++|...+.|...       -....+..+.|..++|.|+-....   ...|+....++.....|...+     
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~-------~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~   92 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSN-------LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTG   92 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECS-------SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEET
T ss_pred             CCcEEEEECCCCCEEEEecC-------CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccC
Confidence            46788999998888777543       235577789999999988641122   235899999888655553221     


Q ss_pred             CcCCccCCCCcEEEEccCCcEEEEeC
Q psy5768          82 KYPAVTACNLHIAVDWIAQNIYWSDP  107 (652)
Q Consensus        82 ~~~~p~~~~~~lavDw~~~~lY~~d~  107 (652)
                      ......    ..+..+.++.||++..
T Consensus        93 ~~~~~~----~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          93 RRMFTD----VAGFDPDGNLIISTDA  114 (281)
T ss_dssp             TEECSE----EEEECTTCCEEEEECT
T ss_pred             cccccc----ccccCCCCCEEEEEEc
Confidence            011122    4455555667777643

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.002  Score=42.90  Aligned_cols=21  Identities=29%  Similarity=0.776  Sum_probs=18.8

Q ss_pred             CCCCCCCeeecCCCCcccCCC
Q psy5768         631 MRDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       631 ~~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +++|++++|+|.||+|||.++
T Consensus         2 ~~~C~~~~f~C~~g~CI~~~~   22 (44)
T d1j8ea_           2 SHSCSSTQFKCNSGRCIPEHW   22 (44)
T ss_dssp             CSSSCTTEEECTTSCEEEGGG
T ss_pred             CccCCCCcEEcCCCCEEChhh
Confidence            468999999999999999875

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0028  Score=42.13  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             CCCCCCCCeeecCCCCcccCCC
Q psy5768         630 AMRDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       630 ~~~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      ...+|++++|+|.||+|||.++
T Consensus         4 ~~~~C~~~~f~C~~g~CI~~~~   25 (44)
T d1f5ya1           4 VGDRCERNEFQCQDGKCISYKW   25 (44)
T ss_dssp             SCCCCCSSSEECSSSCEECTTT
T ss_pred             CCCccCCCCeEcCCCCeEChhH
Confidence            3457999999999999999876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.63  E-value=0.95  Score=42.72  Aligned_cols=236  Identities=9%  Similarity=-0.042  Sum_probs=135.7

Q ss_pred             eEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcce--EEe-ecc
Q psy5768         279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHR--VLL-ERQ  355 (652)
Q Consensus       279 ~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~--~i~-~~~  355 (652)
                      ..|+++.++.+...++... ..   ...+.  .+...+.+++|.+..+.|...+ ..+.|...++......  ..+ ...
T Consensus        30 ~~l~~~~~~~v~i~~~~~~-~~---~~~~~--~H~~~v~~~~~sp~g~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~  102 (311)
T d1nr0a1          30 DKIQYCNGTSVYTVPVGSL-TD---TEIYT--EHSHQTTVAKTSPSGYYCASGD-VHGNVRIWDTTQTTHILKTTIPVFS  102 (311)
T ss_dssp             SEEEEEETTEEEEEETTCS-SC---CEEEC--CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEESSSTTCCEEEEEECSS
T ss_pred             CEEEEEeCCEEEEEECCCC-ce---eEEEc--CCCCCEEEEEEeCCCCeEeccc-cCceEeeeeeecccccccccccccc
Confidence            4566777777777676322 11   12332  2335688999988766554444 4577887777654322  222 234


Q ss_pred             CceeeeEEEccCCEEEEEeCC-CCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeec
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNN-DATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFS  434 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ld  434 (652)
                      ..+..|++.+.++.|..+-.. ...+.+.+++...  ....+ ........+++++|...+++.+-...  ..|...++.
T Consensus       103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~--~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d--~~i~i~d~~  177 (311)
T d1nr0a1         103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--SNGNL-TGQARAMNSVDFKPSRPFRIISGSDD--NTVAIFEGP  177 (311)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--BCBCC-CCCSSCEEEEEECSSSSCEEEEEETT--SCEEEEETT
T ss_pred             Ccccccccccccccccccccccccccccccccccc--ccccc-cccccccccccccccceeeecccccc--ccccccccc
Confidence            467889998877777665443 2346666665422  11111 12235678999999888888775432  256555555


Q ss_pred             CCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCC----C---CceeEEEEe--CCEEEEE
Q psy5768         435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKIS----P---LHPFDMAVY--GEFIFWT  505 (652)
Q Consensus       435 G~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~----~---~~p~glav~--~~~lYwt  505 (652)
                      ...........-.....+++++.++.|+.+. ..+.|...++....+...+...    .   ....+|++.  +.+|+..
T Consensus       178 ~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccCcccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence            4333333322233457899998877777664 3456777777654443333321    1   124567765  4566544


Q ss_pred             cCCCCeEEEEEccCCceEEEEec
Q psy5768         506 DWVIHAVLRANKYTGEEVYTLRK  528 (652)
Q Consensus       506 d~~~~~I~~~~k~~g~~~~~~~~  528 (652)
                      . ..+.|..-+..+++..+.+..
T Consensus       257 s-~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         257 S-ADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             E-TTSEEEEEETTTTEEEEEEEC
T ss_pred             e-CCCeEEEEECCCCcEEEEEEC
Confidence            3 456777778777776666653

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0028  Score=40.32  Aligned_cols=18  Identities=39%  Similarity=0.713  Sum_probs=16.6

Q ss_pred             CCCCeeecCCCCcccCCC
Q psy5768         634 CRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       634 C~~~~f~C~~~~Ci~~~~  651 (652)
                      |++++|+|.||+||+.++
T Consensus         2 C~~~~f~C~~g~Ci~~~~   19 (37)
T d1ajja_           2 CSAFEFHCLSGECIHSSW   19 (37)
T ss_dssp             CCTTCEECTTSCEECGGG
T ss_pred             CCCCceEcCCCCEECchh
Confidence            899999999999999875

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0036  Score=42.31  Aligned_cols=39  Identities=28%  Similarity=0.671  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCcc-cceecCCCceEEEeCCccccCCCcccccceE
Q psy5768         237 TNPCGVNNGGCAE-LCLYNGVSAVCACAHGVVAQDGKSCSEYDAF  280 (652)
Q Consensus       237 ~n~C~~~ng~Cs~-lC~~~~~~~~C~C~~G~l~~dg~~C~~~~~~  280 (652)
                      .|||..+  .|.| .|+....+|+|.|+.||   .|+.|...-.|
T Consensus         8 ~~~C~~~--PC~nG~C~~~~~~y~C~C~~G~---~G~~Ce~~I~~   47 (48)
T d1autl1           8 EHPCASL--CCGHGTCIDGIGSFSCDCRSGW---EGRFCQREVSF   47 (48)
T ss_dssp             CCSSSST--TTTSEEECCCSSCCCEEECTTE---ESTTSCEECCS
T ss_pred             CCcccCC--CCCCCEEECCCCCCeEeCCCCC---cCCCcccccCc
Confidence            3455432  3433 46666678999999998   47788754433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.10  E-value=0.22  Score=49.68  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             CCCCeeEEEEE---CCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCC---
Q psy5768          36 TLSKISSIAVW---PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE---  109 (652)
Q Consensus        36 ~~~~~~~v~~d---~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~---  109 (652)
                      .+..| .+.+-   +...+||+.|  ..+.+|.|++++--.-..|+.-.....+-    |+++.-..+..|+.....   
T Consensus        84 D~HHP-~~S~TdGtyDGrylFVND--kan~RVAvIdl~~fkt~kIi~iPn~~~~H----G~r~~~~p~T~YV~~~~e~~v  156 (459)
T d1fwxa2          84 DLHHV-HMSFTEGKYDGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIH----GLRPQKWPRSNYVFCNGEDET  156 (459)
T ss_dssp             CBCCE-EEEEETTEEEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEE----EEEECCSSBCSEEEEEECSCE
T ss_pred             CcCCC-cccccCCccceeEEEEEc--CCCceEEEEECcceeeeEEEecCCCCCCc----eeecccCCCeEEEEccCcccc
Confidence            45566 34432   1356799999  89999999999976544455432134455    888876667777765322   


Q ss_pred             ----------------CEEEEEEcCCCcE--EEEEeCCCCCceeEEEcCCCCeEEEEecC
Q psy5768         110 ----------------NVIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESG  151 (652)
Q Consensus       110 ----------------~~I~v~~~dg~~~--~~l~~~~~~~P~~iavd~~~g~lywtd~~  151 (652)
                                      +.+.++|.+....  ++.+.   ..|..+++++..+++|+|...
T Consensus       157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         157 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             ESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESC
T ss_pred             ccCCCCccccchhhcceEEEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEecc
Confidence                            2245566654322  22332   368899999999999999754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=1.5  Score=41.51  Aligned_cols=233  Identities=12%  Similarity=0.049  Sum_probs=130.4

Q ss_pred             eEEEEeeecceeEEecCCCCCCCCCceeeeeccccceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEe---ecc
Q psy5768         279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLL---ERQ  355 (652)
Q Consensus       279 ~~Ll~s~~~~i~~i~l~~~~~~~~p~~~~~~~~~~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~---~~~  355 (652)
                      .+|+.+....|+--++..... ..++..+....+-..+.+++|.+..+.|+... ..+.|...++.....+...   ...
T Consensus        64 ~~latg~dg~V~iWd~~~~~~-~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~  141 (337)
T d1gxra_          64 RHVYTGGKGCVKVWDISHPGN-KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSA  141 (337)
T ss_dssp             SEEEEECBSEEEEEETTSTTC-CSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSS
T ss_pred             CEEEEEECCEEEEEEccCCcc-cceeEEeeecCCCCcEEEEEEcCCCCEEEEee-ccccccccccccccccccccccccc
Confidence            344444434454445532222 22333332223334578899988777665554 4577887777654333222   334


Q ss_pred             CceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecC
Q psy5768         356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSG  435 (652)
Q Consensus       356 ~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG  435 (652)
                      ..+..+++.+.+..|+.+ ...+.|...++...   ..............++++++...+++.....   ..|...++..
T Consensus       142 ~~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d---~~v~i~d~~~  214 (337)
T d1gxra_         142 PACYALAISPDSKVCFSC-CSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWTGGLD---NTVRSWDLRE  214 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTT
T ss_pred             cccccccccccccccccc-cccccccccccccc---ccccccccccccccccccccccccccccccc---cccccccccc
Confidence            456778888777666544 45677888887542   1222222334567889999987777776543   2555545433


Q ss_pred             CCceEEEEc-CCCCCceEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEeC-CEEEEEcCCCCeEE
Q psy5768         436 FGTESIITT-DITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYG-EFIFWTDWVIHAVL  513 (652)
Q Consensus       436 ~~~~~l~~~-~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~~-~~lYwtd~~~~~I~  513 (652)
                      .  +.+... .-..+..|++++.++.|+.+.. .+.|...+++......... ......++++.. +.++.+-...+.|.
T Consensus       215 ~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         215 G--RQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             T--EEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             c--eeecccccccceEEEEEcccccccceecc-ccccccccccccccccccc-cccccceEEECCCCCEEEEEeCCCeEE
Confidence            2  222221 2235578999988888876643 4678888888776654433 224456777652 23333433456666


Q ss_pred             EEEccCCceEE
Q psy5768         514 RANKYTGEEVY  524 (652)
Q Consensus       514 ~~~k~~g~~~~  524 (652)
                      .-+..+++...
T Consensus       291 iwd~~~~~~~~  301 (337)
T d1gxra_         291 AWRTPYGASIF  301 (337)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECCCCCEEE
Confidence            66665665443

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.003  Score=42.18  Aligned_cols=20  Identities=40%  Similarity=1.046  Sum_probs=18.1

Q ss_pred             CCCCCCeeecCCCCcccCCC
Q psy5768         632 RDCRPGYFKCDNNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~~~Ci~~~~  651 (652)
                      +.|++++|+|.||+||+.++
T Consensus         4 ~~C~~~~f~C~~g~CI~~~~   23 (45)
T d1d2la_           4 PQCQPGEFACANSRCIQERW   23 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGG
T ss_pred             CcCCCCCeEcCCCCeEChhh
Confidence            57999999999999999875

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0082  Score=38.65  Aligned_cols=35  Identities=29%  Similarity=0.669  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCcc--cceecCCCceEEEeCCccccCCCccc
Q psy5768         236 GTNPCGVNNGGCAE--LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~--lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      +.|||..  ..|.+  .|+....+|+|.|+.||   .|+.|.
T Consensus         2 d~d~C~~--~PC~ngg~C~~~~~~y~C~C~~g~---~G~~Ce   38 (39)
T d1edmb_           2 DGDQCES--NPCLNGGSCKDDINSYECWCPFGF---EGKNCE   38 (39)
T ss_dssp             CCCTTTT--CCCCTTCEEEEETTEEEEECCTTC---CSTTSC
T ss_pred             ccccCCC--CCCCCCcEEEcCCCCEEEECCCCC---CCCCCC
Confidence            3466664  24554  67777779999999998   456663

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.0028  Score=41.06  Aligned_cols=26  Identities=19%  Similarity=0.572  Sum_probs=22.1

Q ss_pred             cceecCCCceEEEeCCccccCCCcccc
Q psy5768         250 LCLYNGVSAVCACAHGVVAQDGKSCSE  276 (652)
Q Consensus       250 lC~~~~~~~~C~C~~G~l~~dg~~C~~  276 (652)
                      .|...+++|.|.|..||.. ||++|.+
T Consensus        14 ~C~Nt~Gsy~C~C~~Gy~G-dG~~C~~   39 (40)
T d1gl4a2          14 ECRDYATGFCCRCVANYTG-NGRQCVA   39 (40)
T ss_dssp             EEEECSSCEEEEECTTEEE-CSSSEEE
T ss_pred             EeecCCCCeEeECCCCCcC-CCCEeeC
Confidence            6888888999999999964 8888863

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.0095  Score=39.37  Aligned_cols=19  Identities=37%  Similarity=0.905  Sum_probs=16.5

Q ss_pred             CCC-CCeeecCCCCcccCCC
Q psy5768         633 DCR-PGYFKCDNNKCILSSH  651 (652)
Q Consensus       633 ~C~-~~~f~C~~~~Ci~~~~  651 (652)
                      +|. +++|+|.||+||+.+|
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~   24 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDK   24 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTT
T ss_pred             cCCCCCeEECCCCCeEchhh
Confidence            464 6999999999999886

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=2.2  Score=40.16  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEeeccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCccEEE
Q psy5768         316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV  395 (652)
Q Consensus       316 ~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~~~~~  395 (652)
                      +.+++|++..+.|+.... .+.|...+++.............+.+|++.+.++.|+ +-+..+.|.+.++...    +.+
T Consensus       227 i~~l~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~-s~s~Dg~i~iwd~~~~----~~~  300 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-STGKDNLLNAWRTPYG----ASI  300 (337)
T ss_dssp             EEEEEECTTSSEEEEEET-TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTC----CEE
T ss_pred             eEEEEEcccccccceecc-ccccccccccccccccccccccccceEEECCCCCEEE-EEeCCCeEEEEECCCC----CEE
Confidence            456667766655554433 4566666665543333323344678889888777665 4455678888886542    233


Q ss_pred             EEeCCCCCceEEEEeCCCCEEEEEe
Q psy5768         396 VRLGQHDKPRGIDIDSCDSRIYWTN  420 (652)
Q Consensus       396 ~~~~~~~~P~~Iavdp~~g~Lywtd  420 (652)
                      ..........+++++|...+|.-+.
T Consensus       301 ~~~~~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         301 FQSKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             EEccCCCCEEEEEEeCCCCEEEEEe
Confidence            3334557788999999766665443

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=94.30  E-value=0.0075  Score=39.29  Aligned_cols=20  Identities=20%  Similarity=0.556  Sum_probs=17.2

Q ss_pred             CCCCCCeeecC--CCCcccCCC
Q psy5768         632 RDCRPGYFKCD--NNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~--~~~Ci~~~~  651 (652)
                      ++|.+++|+|.  +|+||+.+|
T Consensus         1 P~C~~~~f~C~~~~~~CI~~~~   22 (41)
T d2gtlo2           1 PSCDEHEHQCGGDDPQCISKLF   22 (41)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGG
T ss_pred             CCCCcCeeECCCCCCcEeechh
Confidence            47999999995  689999876

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.01  Score=38.14  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=18.0

Q ss_pred             cceecCCCceEEEeCCccccCCCccc
Q psy5768         250 LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       250 lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|+....+|+|.|++||.   |+.|.
T Consensus        14 ~C~~~~~~y~C~C~~G~~---G~~Ce   36 (39)
T d2vj3a2          14 TCLDQIGEFQCICMPGYE---GVHCE   36 (39)
T ss_dssp             EEEECSSCEEEECCTTEE---SSSSC
T ss_pred             EEECCCCCEEEeCCCCCc---cCcCe
Confidence            677777799999999983   55564

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.26  E-value=2.5  Score=40.52  Aligned_cols=179  Identities=9%  Similarity=0.005  Sum_probs=98.2

Q ss_pred             eEEEecCCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE-EEEeC
Q psy5768           2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE-TVVSQ   80 (652)
Q Consensus         2 ~i~v~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~-~v~~~   80 (652)
                      +|++++ .++.|.++++++.....+....+    .-..+.+|+|+|.+++|.-..   ..+.|+.++++....+ .+...
T Consensus        21 ~la~~~-~~~~i~iw~~~~~~~~~~~~l~g----H~~~V~~l~fsp~~~~l~s~s---~D~~i~vWd~~~~~~~~~~~~~   92 (371)
T d1k8kc_          21 QIAICP-NNHEVHIYEKSGNKWVQVHELKE----HNGQVTGVDWAPDSNRIVTCG---TDRNAYVWTLKGRTWKPTLVIL   92 (371)
T ss_dssp             EEEEEC-SSSEEEEEEEETTEEEEEEEEEC----CSSCEEEEEEETTTTEEEEEE---TTSCEEEEEEETTEEEEEEECC
T ss_pred             EEEEEe-CCCEEEEEECCCCCEEEEEEecC----CCCCEEEEEECCCCCEEEEEE---CCCeEEEEeecccccccccccc
Confidence            345553 45679999988764433332221    235789999999888877554   4578888888755433 33222


Q ss_pred             CCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEE-EEE--eCC-CCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5768          81 KKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRY-VLI--SGG-VDQPSALAVDPESGYLFWSESGKIPLI  156 (652)
Q Consensus        81 ~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~-~l~--~~~-~~~P~~iavd~~~g~lywtd~~~~~~I  156 (652)
                      +....+.    .+++++.++.|+... ..+.|.+.+.+..... ...  ... -.....++.+|...+|.-...  ...|
T Consensus        93 ~~~~~v~----~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--D~~v  165 (371)
T d1k8kc_          93 RINRAAR----CVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKC  165 (371)
T ss_dssp             CCSSCEE----EEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCE
T ss_pred             ccccccc----ccccccccccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceecccc--CcEE
Confidence            2134466    888877555555544 4566766665543221 111  111 234678889985444433322  2344


Q ss_pred             EEEeCCCCCc----------------EEEEe--ecccCceeEEEeccCCEEEEEeCC
Q psy5768         157 ARAGLDGKKQ----------------TILAQ--EIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       157 ~~~~ldg~~~----------------~~~~~--~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ...++.....                ..+..  ....+..++++++.+++|+....|
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence            4433321110                11111  113456778888877777766665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.04  E-value=2.2  Score=39.05  Aligned_cols=193  Identities=17%  Similarity=0.163  Sum_probs=105.2

Q ss_pred             ceEEEEEEEcCCCeEEEeecccccEEEEeccCCcceEEee--ccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCCCc
Q psy5768         314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE--RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQ  391 (652)
Q Consensus       314 ~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~~i~~--~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~~~  391 (652)
                      ..+.+++|.+..+.|+ +-...+.|...+++.........  ....+.++++.+.++ ++.+ ...+.+...++.+....
T Consensus        13 ~~V~~l~~s~dg~~l~-s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~-~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          13 KAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTV-SWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             SCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEE-ETTTEEEEECSSSSSSC
T ss_pred             CCcEEEEECCCCCEEE-EEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecc-cceeeEEEeccCCcccc
Confidence            4577889988655554 43445778777776433333332  233567888877554 4433 44677877776543221


Q ss_pred             -cEEEEEeCCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEEeCCCCe
Q psy5768         392 -RIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDK  470 (652)
Q Consensus       392 -~~~~~~~~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~D~~~~~  470 (652)
                       ..... ......+.++++.|....+..+..+    .|..... +   +......-..+..+++.+.++.|+... ..+.
T Consensus        90 ~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~----~i~~~~~-~---~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~  159 (299)
T d1nr0a2          90 SSKAVA-NKLSSQPLGLAVSADGDIAVAACYK----HIAIYSH-G---KLTEVPISYNSSCVALSNDKQFVAVGG-QDSK  159 (299)
T ss_dssp             TTSCCE-EECSSCEEEEEECTTSSCEEEEESS----EEEEEET-T---EEEEEECSSCEEEEEECTTSCEEEEEE-TTSE
T ss_pred             cccccc-ccccccccccccccccccccccccc----ccccccc-c---ccccccccccccccccccccccccccc-cccc
Confidence             11111 1234678899999976666665433    3333221 1   111111123456788887777777654 3467


Q ss_pred             EEEEecCCCceEEEe-cCCCCceeEEEEe--CCEEEEEcCCCCeEEEEEccCC
Q psy5768         471 IERCDYDGTNRIVLS-KISPLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTG  520 (652)
Q Consensus       471 I~~~~ldG~~~~~l~-~~~~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g  520 (652)
                      |...++.+.....+. ......+.++++.  +.+|+..+ ..+.|...+..++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~  211 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANN  211 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            888888765543322 1122445677765  34555444 3445555554443

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.79  E-value=0.0088  Score=37.98  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=16.9

Q ss_pred             cceecCCCceEEEeCCccccCCCcc
Q psy5768         250 LCLYNGVSAVCACAHGVVAQDGKSC  274 (652)
Q Consensus       250 lC~~~~~~~~C~C~~G~l~~dg~~C  274 (652)
                      .|+....+|.|.|++||.   |+.|
T Consensus        15 ~C~~~~~~y~C~C~~g~~---G~~C   36 (37)
T d2c4fl1          15 SCKDQLQSYICFCLPAFE---GRNC   36 (37)
T ss_dssp             EEEEETTEEEEECCTTEE---STTS
T ss_pred             EEECCCCCeEEECCCCCc---CCCC
Confidence            567667789999999983   5555

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.017  Score=37.54  Aligned_cols=20  Identities=35%  Similarity=0.820  Sum_probs=17.0

Q ss_pred             CCCCCCeeecC--CCCcccCCC
Q psy5768         632 RDCRPGYFKCD--NNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~--~~~Ci~~~~  651 (652)
                      .+|++++|+|.  +++|||.+|
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~   24 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFW   24 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGG
T ss_pred             cccCCCceECCCCCCCCccchh
Confidence            47999999995  578999876

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=92.92  E-value=0.018  Score=37.54  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=16.8

Q ss_pred             CCCCCCeeecCC--CCcccCCC
Q psy5768         632 RDCRPGYFKCDN--NKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~~--~~Ci~~~~  651 (652)
                      +.|++++|+|.+  ++|||.+|
T Consensus         1 h~C~~~~f~C~~~~~~CI~~~~   22 (42)
T d2gtlm2           1 HHCDEHESECRGDVPECIHDLL   22 (42)
T ss_dssp             CCCCTTEEECSSSSCCEEEGGG
T ss_pred             CCCCCCeeECCCCCCCEechhh
Confidence            358999999974  78999876

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.02  Score=34.14  Aligned_cols=29  Identities=21%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CCCccccccCCCCceeeeccCceeeccCCcc
Q psy5768         556 GNCDDICKLDETGQVVCSCFTGKVLMEDNRS  586 (652)
Q Consensus       556 g~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C  586 (652)
                      -.|+-.|-|.+.  ..|.||+||.|.++..|
T Consensus         6 t~CPAdCdP~~p--~~C~CPeGyIldeg~~c   34 (35)
T d1dx5i2           6 TACPADCDPNTQ--ASCECPEGYILDDGFIC   34 (35)
T ss_dssp             SEEECEECTTST--TCEECCTTEEEETTTEE
T ss_pred             ccCCCccCCCCC--CcccCCCceEecccccc
Confidence            457777877654  47999999999876555

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.027  Score=36.56  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCCCccccccCC-CCceeeeccCceeeccCCcccC
Q psy5768         546 CAKTPCRHLNGNCDDICKLDE-TGQVVCSCFTGKVLMEDNRSCT  588 (652)
Q Consensus       546 ~~~~~C~~~ng~Cs~lCl~~~-~~~~~C~Cp~g~~l~~d~~C~~  588 (652)
                      |..|||..  |+   .|+... .+.|+|.||.||..   .+|..
T Consensus         1 C~~nPC~n--gG---~C~~~~~~~~y~C~C~~g~~G---~~Ce~   36 (41)
T d1tpga1           1 CSEPRCFN--GG---TCQQALYFSDFVCQCPEGFAG---KSCEI   36 (41)
T ss_dssp             CSSCCSCT--TC---EEEEESSSSCEEEECCTTCBS---SSCCB
T ss_pred             CcCCCCCC--CC---EEecCCCCCCeEECCCCCCCC---CCcCc
Confidence            35689983  33   444443 33799999999864   45653

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=92.78  E-value=0.024  Score=36.76  Aligned_cols=19  Identities=26%  Similarity=0.730  Sum_probs=16.3

Q ss_pred             CCCCCeeecC--CCCcccCCC
Q psy5768         633 DCRPGYFKCD--NNKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~--~~~Ci~~~~  651 (652)
                      .|++++|+|.  +|+|||.++
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~   21 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLL   21 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTT
T ss_pred             CCCCCeeECCCcCCCeechHH
Confidence            4899999996  489999886

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.04  Score=34.31  Aligned_cols=30  Identities=40%  Similarity=0.791  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ++..+||.. +|    .|+.... +|+|.||.||..
T Consensus         2 ~C~~~PC~n-gg----~C~~~~~-~y~C~C~~g~~G   31 (35)
T d2vj3a3           2 ECASSPCLH-NG----RCLDKIN-EFQCECPTGFTG   31 (35)
T ss_dssp             TTTTCCSTT-TC----EEEECSS-CEEEECCTTEES
T ss_pred             CCCCCCCCC-Cc----EEECCCC-CeEEECCCCCCC
Confidence            466789974 34    4555444 699999999864

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.028  Score=35.08  Aligned_cols=30  Identities=37%  Similarity=0.809  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCccccCCCcc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSC  274 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C  274 (652)
                      .|||.. +|    .|+....+|+|.|+.||.   |+.|
T Consensus         5 ~~PC~n-gg----~C~~~~~~y~C~C~~g~~---G~~C   34 (35)
T d2vj3a3           5 SSPCLH-NG----RCLDKINEFQCECPTGFT---GHLC   34 (35)
T ss_dssp             TCCSTT-TC----EEEECSSCEEEECCTTEE---SSSS
T ss_pred             CCCCCC-Cc----EEECCCCCeEEECCCCCC---CCCc
Confidence            466653 23    567666789999999983   5555

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.021  Score=37.28  Aligned_cols=20  Identities=25%  Similarity=0.650  Sum_probs=17.1

Q ss_pred             CCCCCCeeecC-CCCcccCCC
Q psy5768         632 RDCRPGYFKCD-NNKCILSSH  651 (652)
Q Consensus       632 ~~C~~~~f~C~-~~~Ci~~~~  651 (652)
                      .+|++++|+|. +++||+.++
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~   22 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRW   22 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGG
T ss_pred             CCCCCCceEcCCCCEEccchh
Confidence            47899999996 689999876

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.048  Score=34.83  Aligned_cols=31  Identities=23%  Similarity=0.669  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ..|..+||.. +|    .|+.... +|+|.|+.||..
T Consensus         2 d~C~~~PC~n-~g----~C~~~~~-~y~C~C~~G~~G   32 (39)
T d2vj3a2           2 NECVSNPCQN-DA----TCLDQIG-EFQCICMPGYEG   32 (39)
T ss_dssp             CTTTTCCCCS-SC----EEEECSS-CEEEECCTTEES
T ss_pred             cCCcCCCCCC-CC----EEECCCC-CEEEeCCCCCcc
Confidence            3567788873 34    4554444 799999999965

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.042  Score=35.17  Aligned_cols=32  Identities=34%  Similarity=0.618  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         543 LDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       543 ~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      ..+|..+||.. +|.    |+.... +|+|.|+.||..
T Consensus         3 ~d~C~~~PC~n-gg~----C~~~~~-~y~C~C~~g~~G   34 (39)
T d1edmb_           3 GDQCESNPCLN-GGS----CKDDIN-SYECWCPFGFEG   34 (39)
T ss_dssp             CCTTTTCCCCT-TCE----EEEETT-EEEEECCTTCCS
T ss_pred             cccCCCCCCCC-CcE----EEcCCC-CEEEECCCCCCC
Confidence            35677788874 343    444444 699999999864

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.031  Score=35.80  Aligned_cols=31  Identities=35%  Similarity=0.832  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .+||.. +|.    |+....+|.|.|+.||   .|+.|.
T Consensus         5 ~~PC~n-gg~----C~~~~~~y~C~C~~G~---~G~~Ce   35 (39)
T d1xkba1           5 TSPCQN-QGK----CKDGLGEYTCTCLEGF---EGKNCE   35 (39)
T ss_dssp             TCCCCS-SCE----ECCCSSSCCEECCTTE---ETTTTC
T ss_pred             CCCCCC-CcE----EECCCCCEEEECCCCC---CcCcCe
Confidence            566763 343    5555568999999998   466675

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.049  Score=33.15  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             CCCCCCCCCCccccccCCCCceeeeccCceeeccCCcc
Q psy5768         549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRS  586 (652)
Q Consensus       549 ~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C  586 (652)
                      |||.  ||.|+.    ..+ .+.|+|.+||....--+|
T Consensus         8 npCG--nGTCtN----viG-gFec~C~~GFepgpmm~C   38 (39)
T d1emoa2           8 NPCG--NGTCKN----VIG-GFECTCEEGFEPGPMMTC   38 (39)
T ss_dssp             CSSS--SSCEEE----CSS-SEEECCSSSSCCCSSSCC
T ss_pred             CccC--Cceeee----ccc-ceEEeecCCcCCCcceec
Confidence            7776  577764    334 699999999976544444

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.048  Score=35.31  Aligned_cols=36  Identities=28%  Similarity=0.635  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeecc-CceeeccCCccc
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCF-TGKVLMEDNRSC  587 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp-~g~~l~~d~~C~  587 (652)
                      .+|..+||.. +|    .|+....++|+|.|+ .||..   +.|.
T Consensus         2 d~C~~~PC~n-gG----~C~~~~~~~y~C~C~~~gy~G---~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQN-RG----ECMSTGFDQYKCDCTRTGFYG---ENCT   38 (41)
T ss_dssp             CTTTTCCCCT-TC----EEEEEETTEEEEECTTSSEET---TTTC
T ss_pred             CcCcCCCCCC-CC----EEEECCCCCEEEeCcCCCcCC---cCcC
Confidence            3567788873 34    454444457999998 48854   4554

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.037  Score=37.14  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCccc
Q psy5768         543 LDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC  587 (652)
Q Consensus       543 ~~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~  587 (652)
                      ..+|..|||.  ||.|    +...+ +|+|.|+.||..   ++|.
T Consensus         8 ~~~C~~~PC~--nG~C----~~~~~-~y~C~C~~G~~G---~~Ce   42 (48)
T d1autl1           8 EHPCASLCCG--HGTC----IDGIG-SFSCDCRSGWEG---RFCQ   42 (48)
T ss_dssp             CCSSSSTTTT--SEEE----CCCSS-CCCEEECTTEES---TTSC
T ss_pred             CCcccCCCCC--CCEE----ECCCC-CCeEeCCCCCcC---CCcc
Confidence            4577788885  4555    44454 699999999964   4564

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=4.5  Score=36.32  Aligned_cols=147  Identities=12%  Similarity=0.004  Sum_probs=84.9

Q ss_pred             CCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEc
Q psy5768          38 SKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARL  117 (652)
Q Consensus        38 ~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~  117 (652)
                      ..+.+|+|+|.++.|.-..   ..+.|..+++........+... ...+.    .++++.....+ .+......+...+.
T Consensus        18 ~~I~~l~~sp~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~h-~~~V~----~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSAS---EDATIKVWDYETGDFERTLKGH-TDSVQ----DISFDHSGKLL-ASCSADMTIKLWDF   88 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEE---SSSCEEEEETTTCCCCEEECCC-SSCEE----EEEECTTSSEE-EEEETTSCCCEEET
T ss_pred             CCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCEEEEEeCC-CCcEE----EEeeecccccc-cccccccccccccc
Confidence            5789999999877766544   5688888887643323333443 44566    77777644444 33334445555555


Q ss_pred             CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCC
Q psy5768         118 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       118 dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ..................+...|...+++....  ...+...++........+.........++.++.+..|.....+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR--DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccceeeeccCCCceEEeecc--CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence            444333333333455667778876666654432  3456555655433333233223456777888777777666666

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.067  Score=34.15  Aligned_cols=30  Identities=30%  Similarity=0.819  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      .|..+||.. +|.|    +.... .|+|.|+.||..
T Consensus         2 ~C~~~PC~n-gg~C----~~~~~-~y~C~C~~G~~G   31 (39)
T d1xkba1           2 QCETSPCQN-QGKC----KDGLG-EYTCTCLEGFEG   31 (39)
T ss_dssp             TTTTCCCCS-SCEE----CCCSS-SCCEECCTTEET
T ss_pred             cCCCCCCCC-CcEE----ECCCC-CEEEECCCCCCc
Confidence            466789974 3445    44444 699999999964

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.39  E-value=0.037  Score=34.94  Aligned_cols=31  Identities=32%  Similarity=0.794  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      .+|..+||.. +|.|    +.... +|+|.|+.||..
T Consensus         3 d~C~~~PC~n-gg~C----~~~~~-~y~C~C~~g~~G   33 (37)
T d2c4fl1           3 DQCASSPCQN-GGSC----KDQLQ-SYICFCLPAFEG   33 (37)
T ss_dssp             CGGGGCCCCT-TCEE----EEETT-EEEEECCTTEES
T ss_pred             ccCCCCCCCC-CCEE----ECCCC-CeEEECCCCCcC
Confidence            4566789974 3445    44444 799999999964

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.061  Score=34.34  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=18.0

Q ss_pred             cceecCCCceEEEeCCccccCCCccc
Q psy5768         250 LCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       250 lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|+....+|+|.|+.||.   |+.|.
T Consensus        14 ~C~~~~~~~~C~C~~g~~---G~~Ce   36 (39)
T d1g1ta2          14 ECVETINNYTCKCDPGFS---GLKCE   36 (39)
T ss_dssp             EEEEETTEEEEEECTTEE---STTSC
T ss_pred             EEECCCCCEEEeCCCCCc---CcCcC
Confidence            677777789999999983   55664

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.046  Score=34.37  Aligned_cols=28  Identities=32%  Similarity=0.693  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCcccceecCC-CceEEEeCCc
Q psy5768         237 TNPCGVNNGGCAELCLYNGV-SAVCACAHGV  266 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~-~~~C~C~~G~  266 (652)
                      ..||...  .|++-|...+. +|+|.|+.||
T Consensus         4 vDPCf~~--~CE~qCqP~~~~~Y~CiCaeGF   32 (43)
T d1dx5i1           4 VDPCFRA--NCEYQCQPLDQTSYLCVCAEGF   32 (43)
T ss_dssp             CCGGGGC--CCSSEEEECSSSCEEEECCTTE
T ss_pred             cccccCC--CcceeeeeCCCCcceEEecccc
Confidence            5788754  69999996554 8999999998

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=89.71  E-value=0.063  Score=34.90  Aligned_cols=36  Identities=28%  Similarity=0.626  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCCCCCccccccCCCCceeeeccC-ceeeccCCccc
Q psy5768         544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFT-GKVLMEDNRSC  587 (652)
Q Consensus       544 ~~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~-g~~l~~d~~C~  587 (652)
                      .+|..|||.. +|    .|+....++|+|.|+. ||..   .+|.
T Consensus         3 d~C~~nPC~n-gG----~C~~~~~~~y~C~C~~~G~~G---~~Ce   39 (42)
T d1q4ga2           3 NPCCYYPCQH-QG----ICVRFGLDRYQCDCTRTGYSG---PNCT   39 (42)
T ss_dssp             CGGGGCCCCT-TC----EEEEETTTEEEEECTTSSEET---TTTC
T ss_pred             ccCcCCCCCC-CC----EeeeCCCCCEEEECCCCCcCC---cCcC
Confidence            4566788873 34    4444444579999985 8854   4554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.70  E-value=7.8  Score=35.92  Aligned_cols=212  Identities=10%  Similarity=-0.058  Sum_probs=108.0

Q ss_pred             eEEEEEEEcCCCeEEEeecccccEEEEeccCC-cceEE-eec--cCceeeeEEEccC-CEEEEEeCCCCeEEEEEcCCCC
Q psy5768         315 NIIELSYDYKRKTLFYSDIQKGTINSVFFNGS-NHRVL-LER--QGSVEGLAYEYVH-NYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       315 ~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~-~~~~i-~~~--~~~~~glAvDw~~-~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      .+.+++|++..++|-++......|+..+.... ..... +.+  -..+..+++.+.. +.+..+-...++|.+-++....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            45678999999888877654333433332211 11111 122  2357788887643 3444555566777665543211


Q ss_pred             Ccc--EEEE--Ee-CCCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEEcCCCCCceEEEecCCCEEEEE
Q psy5768         390 AQR--IVVV--RL-GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWG  464 (652)
Q Consensus       390 ~~~--~~~~--~~-~~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~~~l~~P~glaiD~~~~~LYw~  464 (652)
                      ...  ....  .. .......+|+.+|...+|..+..+... .+.....+.......+...-...+.+++.+..+.+..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccc-eEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            111  1100  01 122344678899877777766554332 34334444222111111112234678888777766665


Q ss_pred             eCCCCeEEEEecCCCceEEEecCC---CCceeEEEEe--CCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         465 DARLDKIERCDYDGTNRIVLSKIS---PLHPFDMAVY--GEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       465 D~~~~~I~~~~ldG~~~~~l~~~~---~~~p~glav~--~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      -...+.|...++.......-....   .....++++.  .+.++.+-...+.|..-+..+++....+.
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence            555566666665433222222211   1234667764  34556655566677766766666555544

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.085  Score=33.85  Aligned_cols=31  Identities=29%  Similarity=0.642  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCCcccceecCCCceEEEeCCccccCCCccc
Q psy5768         237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       237 ~n~C~~~ng~Cs~lC~~~~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      .|||.. +|    .|+....+|+|.|+.||   .|..|.
T Consensus         6 ~~pC~n-gg----~C~~~~~~y~C~C~~g~---~G~~Ce   36 (40)
T d1g1sa2           6 DMSCSK-QG----ECLETIGNYTCSCYPGF---YGPECE   36 (40)
T ss_dssp             TTGGGG-SE----EEEECSSSEEEEECTTE---ESTTSC
T ss_pred             CCcCCC-Cc----EEECCCCCeEEeCCCCc---cCCCCC
Confidence            466653 23    46766778999999998   466675

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.41  E-value=6.9  Score=34.89  Aligned_cols=176  Identities=5%  Similarity=-0.024  Sum_probs=91.6

Q ss_pred             CCCCeEEEEecCC-CeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEEEeCCCcCCc
Q psy5768           8 PTQSKIVVCNLEG-EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAV   86 (652)
Q Consensus         8 ~~~~~I~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p   86 (652)
                      ...+.+.++++.. +....+..       ....+..+++++....|....   ..+.|.............+... ...+
T Consensus       120 ~~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~-~~~i  188 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGYCVKTFTG-------HREWVRMVRPNQDGTLIASCS---NDQTVRVWVVATKECKAELREH-RHVV  188 (317)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEEECCC-SSCE
T ss_pred             ccCcceeEeecccceeeeEEcc-------CCCcceeeecccCCCEEEEEe---CCCeEEEEeeccceeeEEEecC-CCCc
Confidence            3456667777663 33344432       235678889998777766554   4566666665543222222111 1111


Q ss_pred             c---------------CCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecC
Q psy5768          87 T---------------ACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG  151 (652)
Q Consensus        87 ~---------------~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~  151 (652)
                      .               ............+.+..+-+..+.|.+.++........+...-.....+++.|...+|+-..  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--  266 (317)
T d1vyhc1         189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA--  266 (317)
T ss_dssp             EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE--
T ss_pred             eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE--
Confidence            1               00001111222334444444566777777654433333333335567899999666665544  


Q ss_pred             CCCeEEEEeCCCCCcEEEEeecccCceeEEEeccCCEEEEEeCCC
Q psy5768         152 KIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       152 ~~~~I~~~~ldg~~~~~~~~~~~~~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      ..+.|...++........+..--...+.+++.+.++.|+-...||
T Consensus       267 ~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            345787777754333322222234568888888777777666663

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.047  Score=34.89  Aligned_cols=18  Identities=33%  Similarity=0.708  Sum_probs=15.1

Q ss_pred             CCCCeeecCCC--CcccCCC
Q psy5768         634 CRPGYFKCDNN--KCILSSH  651 (652)
Q Consensus       634 C~~~~f~C~~~--~Ci~~~~  651 (652)
                      |++++|+|.+|  +|||.+|
T Consensus         1 C~~~~f~C~~g~~~CI~~~~   20 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSW   20 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGG
T ss_pred             CCCCceECCCCCCCeeechh
Confidence            78999999864  6999876

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.83  E-value=0.14  Score=33.14  Aligned_cols=27  Identities=30%  Similarity=0.691  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       548 ~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      .+||.. +|    .|+..++ +|+|.||.||..
T Consensus        10 ~~pC~n-~g----~C~n~~g-~y~C~C~~G~~G   36 (42)
T d2vj3a1          10 ANPCEH-AG----KCINTLG-SFECQCLQGYTG   36 (42)
T ss_dssp             SCSSST-TC----EEEECSS-SEEEECCTTEES
T ss_pred             CCCCCC-Cc----EeECCCC-CEEeECCCCCcC
Confidence            466752 33    4555555 699999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.71  E-value=8.1  Score=34.78  Aligned_cols=166  Identities=10%  Similarity=0.029  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccE---EEEeCCCcC
Q psy5768           8 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRE---TVVSQKKYP   84 (652)
Q Consensus         8 ~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~---~v~~~~~~~   84 (652)
                      ...+.|.++|++...........     .-..+.++++.+. ++++.+.   ..+.+..+...++...   .+.... ..
T Consensus        31 s~Dg~v~vWd~~~~~~~~~~~~~-----h~~~v~~v~~~~~-g~~~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~-~~  100 (299)
T d1nr0a2          31 DAEGHINSWDISTGISNRVFPDV-----HATMITGIKTTSK-GDLFTVS---WDDHLKVVPAGGSGVDSSKAVANKL-SS  100 (299)
T ss_dssp             ETTSCEEEEETTTCCEEECSSCS-----CSSCEEEEEECTT-SCEEEEE---TTTEEEEECSSSSSSCTTSCCEEEC-SS
T ss_pred             cCCCeEEEEECCCCcEEEEEcCC-----CCCcEEEEEeecc-ceeeccc---ceeeEEEeccCCccccccccccccc-cc
Confidence            34567888887643333332211     2356889999976 4566554   4567877777665311   111122 23


Q ss_pred             CccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEeCCCC
Q psy5768          85 AVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK  164 (652)
Q Consensus        85 ~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~~~~ldg~  164 (652)
                      .+.    ++++...++.+....  .+.|.+.+.. +.....   ....+..+++.|...+|+...  ....|...++.+.
T Consensus       101 ~~~----~~~~s~~g~~~~~~~--~~~i~~~~~~-~~~~~~---~~~~~~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~  168 (299)
T d1nr0a2         101 QPL----GLAVSADGDIAVAAC--YKHIAIYSHG-KLTEVP---ISYNSSCVALSNDKQFVAVGG--QDSKVHVYKLSGA  168 (299)
T ss_dssp             CEE----EEEECTTSSCEEEEE--SSEEEEEETT-EEEEEE---CSSCEEEEEECTTSCEEEEEE--TTSEEEEEEEETT
T ss_pred             ccc----ccccccccccccccc--cccccccccc-cccccc---ccccccccccccccccccccc--ccccccccccccc
Confidence            455    777766555554443  3456555432 222222   224677889988655555543  3457777777654


Q ss_pred             CcEEEEe-ecccCceeEEEeccCCEEEEEeCC
Q psy5768         165 KQTILAQ-EIIMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       165 ~~~~~~~-~~~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ....+.. ..-..+..+++++.+..|+..+.+
T Consensus       169 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         169 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             EEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            4332221 113456888888877777666665

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.081  Score=33.96  Aligned_cols=30  Identities=27%  Similarity=0.665  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      .|..+||.. +|    .|+.... .|+|.|+.||..
T Consensus         3 ~C~~~pC~n-gg----~C~~~~~-~y~C~C~~g~~G   32 (40)
T d1g1sa2           3 SCQDMSCSK-QG----ECLETIG-NYTCSCYPGFYG   32 (40)
T ss_dssp             CCCTTGGGG-SE----EEEECSS-SEEEEECTTEES
T ss_pred             cccCCcCCC-Cc----EEECCCC-CeEEeCCCCccC
Confidence            466788873 23    3555554 699999999965

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=88.58  E-value=0.072  Score=34.62  Aligned_cols=19  Identities=32%  Similarity=0.985  Sum_probs=15.5

Q ss_pred             CCCCCeeecCC-----CCcccCCC
Q psy5768         633 DCRPGYFKCDN-----NKCILSSH  651 (652)
Q Consensus       633 ~C~~~~f~C~~-----~~Ci~~~~  651 (652)
                      +|++++|+|.+     ++|||.+|
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~   24 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDW   24 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhh
Confidence            58999999964     57999876

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=88.50  E-value=0.056  Score=35.17  Aligned_cols=25  Identities=24%  Similarity=0.587  Sum_probs=17.2

Q ss_pred             cceec-CCCceEEEeC-CccccCCCccccc
Q psy5768         250 LCLYN-GVSAVCACAH-GVVAQDGKSCSEY  277 (652)
Q Consensus       250 lC~~~-~~~~~C~C~~-G~l~~dg~~C~~~  277 (652)
                      .|+.. ..+|+|.|+. ||   .|+.|..+
T Consensus        15 ~C~~~~~~~y~C~C~~~G~---~G~~Ce~p   41 (42)
T d1q4ga2          15 ICVRFGLDRYQCDCTRTGY---SGPNCTIP   41 (42)
T ss_dssp             EEEEETTTEEEEECTTSSE---ETTTTCEE
T ss_pred             EeeeCCCCCEEEECCCCCc---CCcCcCcC
Confidence            56543 4579999985 88   46777643

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.14  Score=33.02  Aligned_cols=32  Identities=34%  Similarity=0.681  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCCcccceec--CCCceEEEeCCccccCCCccc
Q psy5768         236 GTNPCGVNNGGCAELCLYN--GVSAVCACAHGVVAQDGKSCS  275 (652)
Q Consensus       236 ~~n~C~~~ng~Cs~lC~~~--~~~~~C~C~~G~l~~dg~~C~  275 (652)
                      ..|||.. .|.    |+..  ..+|+|.|+.||   .|..|.
T Consensus         2 ~~nPC~n-gG~----C~~~~~~~~y~C~C~~g~---~G~~Ce   35 (41)
T d1tpga1           2 SEPRCFN-GGT----CQQALYFSDFVCQCPEGF---AGKSCE   35 (41)
T ss_dssp             SSCCSCT-TCE----EEEESSSSCEEEECCTTC---BSSSCC
T ss_pred             cCCCCCC-CCE----EecCCCCCCeEECCCCCC---CCCCcC
Confidence            3688874 344    4533  337999999998   466776

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.21  E-value=0.067  Score=34.56  Aligned_cols=25  Identities=24%  Similarity=0.583  Sum_probs=17.1

Q ss_pred             cceec-CCCceEEEe-CCccccCCCccccc
Q psy5768         250 LCLYN-GVSAVCACA-HGVVAQDGKSCSEY  277 (652)
Q Consensus       250 lC~~~-~~~~~C~C~-~G~l~~dg~~C~~~  277 (652)
                      .|+.. ..+|+|.|+ .||   .|+.|..+
T Consensus        14 ~C~~~~~~~y~C~C~~~gy---~G~~Ce~p   40 (41)
T d1cvua2          14 ECMSTGFDQYKCDCTRTGF---YGENCTTP   40 (41)
T ss_dssp             EEEEEETTEEEEECTTSSE---ETTTTCEE
T ss_pred             EEEECCCCCEEEeCcCCCc---CCcCcCcC
Confidence            56643 347999998 588   46777643

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.068  Score=34.13  Aligned_cols=30  Identities=30%  Similarity=0.603  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceeeeccCceee
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVL  580 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l  580 (652)
                      +|..+||.. +|    .|+...+ +|+|.|+.||..
T Consensus         3 ~C~~~pC~n-gg----~C~~~~~-~~~C~C~~g~~G   32 (39)
T d1g1ta2           3 ACTNTSCSG-HG----ECVETIN-NYTCKCDPGFSG   32 (39)
T ss_dssp             CCCTTGGGG-SE----EEEEETT-EEEEEECTTEES
T ss_pred             cccCCcCCC-Cc----EEECCCC-CEEEeCCCCCcC
Confidence            566788873 23    4555444 799999999965

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=11  Score=37.52  Aligned_cols=183  Identities=9%  Similarity=0.020  Sum_probs=85.9

Q ss_pred             eEEEEecCCCeeEEEecCCCCCCCCCCCeeEEEEECCCCEEEE--EeccCCcceEEEEEcCCCccEEEEeCCCcCCccCC
Q psy5768          12 KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW--SNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTAC   89 (652)
Q Consensus        12 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~lyw--~d~~~~~~~I~~~~~dgs~~~~v~~~~~~~~p~~~   89 (652)
                      .++++++++................-.-+..+.+.+ ++++++  .+-......|..++.......++.....-.-++..
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~  307 (465)
T d1xfda1         229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ  307 (465)
T ss_dssp             EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             eEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEecc
Confidence            467778876654333211100000111245566654 455544  44112233567777765444444432201101100


Q ss_pred             CCcEEEEccCCcEEEEe----CCCCEEEEEEc-------CCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCC---Ce
Q psy5768          90 NLHIAVDWIAQNIYWSD----PKENVIEVARL-------TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI---PL  155 (652)
Q Consensus        90 ~~~lavDw~~~~lY~~d----~~~~~I~v~~~-------dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~---~~  155 (652)
                      .....+...++.++|..    .+.+.+....+       +|...+.|-.+...--.-+++|+.++.||++-....   ..
T Consensus       308 ~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~h  387 (465)
T d1xfda1         308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ  387 (465)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred             CCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceE
Confidence            01345555566665532    23445554433       222222222222111123579999999999876432   35


Q ss_pred             EEEEeCCCCCcEEEEeeccc---CceeEEEeccCCEEEEEeCCC
Q psy5768         156 IARAGLDGKKQTILAQEIIM---PIKDITLDLKFFSAFYRNLSK  196 (652)
Q Consensus       156 I~~~~ldg~~~~~~~~~~~~---~p~gl~lD~~~~~ly~~d~~g  196 (652)
                      +.+.+++|+.....+...+.   .-..+++++..+. |+..+.|
T Consensus       388 ly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y-~v~~~s~  430 (465)
T d1xfda1         388 LYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF-FLLKCEG  430 (465)
T ss_dssp             EEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE-EEEECCS
T ss_pred             EEEEECCCCCcceeeccccCCCCCEEEEEECCCCCE-EEEEeec
Confidence            99999999865543332211   1135566654433 4444443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.24  E-value=15  Score=34.39  Aligned_cols=187  Identities=5%  Similarity=-0.015  Sum_probs=103.6

Q ss_pred             cceEEEEEEEcCCCeEEEeecccccEEEEeccCCcce-EEe--eccCceeeeEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy5768         313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHR-VLL--ERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK  389 (652)
Q Consensus       313 ~~~~~~v~~D~~~~~lywsd~~~~~I~~~~~~g~~~~-~i~--~~~~~~~glAvDw~~~~LYwtd~~~~~I~~~~~~~~~  389 (652)
                      ...+.+++|.+..+.|.-.. ..+.|+..+++....+ .+.  .....+..+++++.++.|+... ..+.|.+.+++...
T Consensus        51 ~~~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          51 NGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQEN  128 (371)
T ss_dssp             SSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTT
T ss_pred             CCCEEEEEECCCCCEEEEEE-CCCeEEEEeecccccccccccccccccccccccccccccceeec-ccCcceeeeeeccc
Confidence            35578899998777665544 3567777777654333 222  2345688999998888877654 45666666655433


Q ss_pred             CccEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCC----------------ceEEEEc--CCCCCc
Q psy5768         390 AQRIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG----------------TESIITT--DITMPN  450 (652)
Q Consensus       390 ~~~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~----------------~~~l~~~--~l~~P~  450 (652)
                      .......... ......+++.+|...+|.-.....   .|.-..+....                ...+...  ...+..
T Consensus       129 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF---KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS---CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             ccccccccccccccccccccccccccceeccccCc---EEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence            2111111122 224568899999666554443321   33222222111                1112211  223457


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEecCCCceEEEecCCCCceeEEEEe-CCEEEEE
Q psy5768         451 ALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY-GEFIFWT  505 (652)
Q Consensus       451 glaiD~~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~~~p~glav~-~~~lYwt  505 (652)
                      ++++++.+++|+.+.. .+.|...++........+........++++. ++.+..+
T Consensus       206 ~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         206 GVCFSANGSRVAWVSH-DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             EEEECSSSSEEEEEET-TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             EEEeeccccccccccc-CCcceEEeeecccceeeeecccccceeeeecCCCCEEEE
Confidence            8999998888887743 4678888886554433333231223567664 3444443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.72  E-value=16  Score=34.04  Aligned_cols=175  Identities=11%  Similarity=0.022  Sum_probs=96.6

Q ss_pred             CCeEEEEecC-CCeeEEEecCCCC-----------CCCCCCCeeEEEEECCCCEEEEEeccCCcceEEEEEcCCCccEEE
Q psy5768          10 QSKIVVCNLE-GEYQTTILSNESN-----------DTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETV   77 (652)
Q Consensus        10 ~~~I~~~~~~-g~~~~~~~~~~~~-----------~~~~~~~~~~v~~d~~~~~lyw~d~~~~~~~I~~~~~dgs~~~~v   77 (652)
                      .+.|.++++. |+...++......           ....-..+.+|++++.+..|+-..   ..+.|..++.........
T Consensus        82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~---~dg~v~i~~~~~~~~~~~  158 (388)
T d1erja_          82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA---EDRLIRIWDIENRKIVMI  158 (388)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEE
T ss_pred             CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc---cccccccccccccccccc
Confidence            6788888876 5554444321110           001223578899999877777655   567787777765433333


Q ss_pred             EeCCCcCCccCCCCcEEEEccCCcEEEEeCCCCEEEEEEcCCCcEEEEEeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5768          78 VSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA  157 (652)
Q Consensus        78 ~~~~~~~~p~~~~~~lavDw~~~~lY~~d~~~~~I~v~~~dg~~~~~l~~~~~~~P~~iavd~~~g~lywtd~~~~~~I~  157 (652)
                      .... ...+.    .+++......++.+. ..+.|.+.+............ ...+..++..+.+|.++.+-. ....|.
T Consensus       159 ~~~h-~~~v~----~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~d~~i~  230 (388)
T d1erja_         159 LQGH-EQDIY----SLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGS-LDRAVR  230 (388)
T ss_dssp             ECCC-SSCEE----EEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEE-TTSCEE
T ss_pred             cccc-ccccc----ccccccccccccccc-cceeeeeeecccccccccccc-ccccccccccCCCCCeEEEEc-CCCeEE
Confidence            3333 34455    677766555555544 567888888877655444433 355667777777776666532 234566


Q ss_pred             EEeCCCCCc-EEEEeec------ccCceeEEEeccCCEEEEEeCC
Q psy5768         158 RAGLDGKKQ-TILAQEI------IMPIKDITLDLKFFSAFYRNLS  195 (652)
Q Consensus       158 ~~~ldg~~~-~~~~~~~------~~~p~gl~lD~~~~~ly~~d~~  195 (652)
                      ..++..... ..+....      ......+++.+.+..|+....+
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            655543222 2211111      1234667776666665555554

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.57  E-value=0.074  Score=34.12  Aligned_cols=26  Identities=15%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             ccccCCCCceeeeccCceeeccCCcccC
Q psy5768         561 ICKLDETGQVVCSCFTGKVLMEDNRSCT  588 (652)
Q Consensus       561 lCl~~~~~~~~C~Cp~g~~l~~d~~C~~  588 (652)
                      .|..+++ +|+|.|++||.. +..+|.+
T Consensus        14 ~C~Nt~G-sy~C~C~~Gy~G-dG~~C~~   39 (40)
T d1gl4a2          14 ECRDYAT-GFCCRCVANYTG-NGRQCVA   39 (40)
T ss_dssp             EEEECSS-CEEEEECTTEEE-CSSSEEE
T ss_pred             EeecCCC-CeEeECCCCCcC-CCCEeeC
Confidence            4777776 699999999985 2377765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.39  E-value=22  Score=32.58  Aligned_cols=206  Identities=9%  Similarity=-0.026  Sum_probs=107.6

Q ss_pred             ceEEEEEEEcC-CCeEEEeecccccEEEEeccCCc-ceE--------EeeccCceeeeEEEccCCEEEEEeCC-CCeEEE
Q psy5768         314 KNIIELSYDYK-RKTLFYSDIQKGTINSVFFNGSN-HRV--------LLERQGSVEGLAYEYVHNYLYWTCNN-DATINK  382 (652)
Q Consensus       314 ~~~~~v~~D~~-~~~lywsd~~~~~I~~~~~~g~~-~~~--------i~~~~~~~~glAvDw~~~~LYwtd~~-~~~I~~  382 (652)
                      ..+.+++|.+. ++.++.+-...++|...++.... ...        .......+..|++...++.|..+... ...+.+
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            45788999875 44555554455666655443211 111        11122346678888888877765543 345666


Q ss_pred             EEcCCCCCccEEEEEeC-CCCCceEEEEeCCCCEEEEEecCCCCCceEEEeecCCCceEEEE--c---CCCCCceEEEec
Q psy5768         383 IDLDSPKAQRIVVVRLG-QHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIIT--T---DITMPNALALDH  456 (652)
Q Consensus       383 ~~~~~~~~~~~~~~~~~-~~~~P~~Iavdp~~g~Lywtd~~~~~~~I~r~~ldG~~~~~l~~--~---~l~~P~glaiD~  456 (652)
                      ...+..    +.+..+. ......+++++|...+++.+-....  .|....+.  ..+....  .   .......+++.+
T Consensus       144 ~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--~v~~~d~~--~~~~~~~~~~~~~~~~~v~~v~~~p  215 (325)
T d1pgua1         144 ISWDSG----NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG--SVVFYQGP--PFKFSASDRTHHKQGSFVRDVEFSP  215 (325)
T ss_dssp             EETTTC----CEEEECCSCSSCEEEEEECSSSSCEEEEEETTT--EEEEEETT--TBEEEEEECSSSCTTCCEEEEEECS
T ss_pred             Eeeccc----ccceeeeecccccccccccccccceEEEeeccc--cccccccc--ccccceecccccCCCCccEEeeecc
Confidence            665432    2222222 2345578999998777766543322  44333332  2222111  1   112346788887


Q ss_pred             CCCEEEEEeCCCCeEEEEecCCCceEEEecCCC----CceeEEEEeCCEEEEEcCCCCeEEEEEccCCceEEEEe
Q psy5768         457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISP----LHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLR  527 (652)
Q Consensus       457 ~~~~LYw~D~~~~~I~~~~ldG~~~~~l~~~~~----~~p~glav~~~~lYwtd~~~~~I~~~~k~~g~~~~~~~  527 (652)
                      +.++++.+-...+.|...++.-......+....    ...|+++..++..+.+-...+.|..-+..+++..+.+.
T Consensus       216 d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            777776665556778888876444333333221    11245554444333444455666666666665444433

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.31  E-value=0.46  Score=32.31  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCCCCCccccccCCCCceeeeccCceeeccCCccc
Q psy5768         545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC  587 (652)
Q Consensus       545 ~~~~~~C~~~ng~Cs~lCl~~~~~~~~C~Cp~g~~l~~d~~C~  587 (652)
                      ++..+||.. +|.|..+   .....++|.||.||..   .+|.
T Consensus         8 ~c~~~~C~N-gG~C~~~---~~~~~~~C~C~~gy~G---~~Ce   43 (53)
T d3egfa_           8 SSYDGYCLN-GGVCMHI---ESLDSYTCNCVIGYSG---DRCQ   43 (53)
T ss_dssp             TTSSCCSCS-SCEEEEE---SSSSCEEEECCTTCCS---SSSC
T ss_pred             CCCCCCCCC-CcEeecc---CCCCCeEeECCCCCcC---CCCc
Confidence            345577763 3445321   2223799999999965   4564