Psyllid ID: psy5779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcEEcccccHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcEEEc
Coil and Loop (DISEMBL)
TLDAGERKLQEAKFELITSEASYFKSLTVLEKHfiaspllddvnilskndrkhlfGNVTAVRKCSERLLAALEQCWQDSILLQ
Flexible Loop (DISEMBL)
tldagerkLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCwqdsillq
Low Complexity Region (SEG)
TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLQ
Disordered region (IsUnstruct)
*************FELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSIL**
Disordered Region (DISOPRED)
*****ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD****LSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILL*
Disordered Region (DISEMBL)
TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLQ
Disordered Region (DISPRO)
*LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
O94989	841	Rho guanine nucleotide ex	yes	N/A	0.843	0.083	0.472	7e-10
Q8IW93	802	Rho guanine nucleotide ex	no	N/A	0.783	0.081	0.522	2e-09
Q5BKC9	701	Ephexin-1 OS=Rattus norve	no	N/A	0.951	0.112	0.456	4e-09
Q8BWA8	802	Rho guanine nucleotide ex	yes	N/A	0.867	0.089	0.486	4e-09
Q5FWH6	849	Rho guanine nucleotide ex	no	N/A	0.843	0.082	0.444	5e-09
Q8CHT1	710	Ephexin-1 OS=Mus musculus	no	N/A	0.951	0.111	0.444	1e-08
Q5RDX5	709	Ephexin-1 OS=Pongo abelii	no	N/A	0.951	0.111	0.444	2e-08
Q8N5V2	710	Ephexin-1 OS=Homo sapiens	no	N/A	0.951	0.111	0.444	2e-08
Q96DR7	871	Rho guanine nucleotide ex	no	N/A	0.963	0.091	0.414	6e-08
Q12774	1597	Rho guanine nucleotide ex	no	N/A	0.891	0.046	0.407	3e-07

>sp|O94989|ARHGF_HUMAN Rho guanine nucleotide exchange factor 15 OS=Homo sapiens GN=ARHGEF15 PE=1 SV=4

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL   ER++QE+ FE++TSEASY +SL +L   F+ S  L D   L+  D   LF NV  
Sbjct: 410 TLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALRDT--LTPRDHHTLFSNVQR 467

Query: 61  VRKCSERLLAAL 72
           V+  SER LA L
Sbjct: 468 VQGVSERFLATL 479

Specific GEF for RhoA activation. Does not activate RAC1 or CDC42. Regulates vascular smooth muscle contractility. Negatively regulates excitatory synapse development by suppressing the synapse-promoting activity of EPHB2.
Homo sapiens (taxid: 9606)

>sp|Q8IW93|ARHGJ_HUMAN Rho guanine nucleotide exchange factor 19 OS=Homo sapiens GN=ARHGEF19 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 8   KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
           KLQEAKFELITSEASY  SL+V   HF+ S  L +   L   D++ LF  +  V+  SER
Sbjct: 376 KLQEAKFELITSEASYIHSLSVAVGHFLGSAELSEC--LGAQDKQWLFSKLPEVKSTSER 433

Query: 68  LLAALEQ 74
            L  LEQ
Sbjct: 434 FLQDLEQ 440

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase.

Homo sapiens (taxid: 9606)

>sp|Q5BKC9|NGEF_RAT Ephexin-1 OS=Rattus norvegicus GN=Ngef PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
           L   E KLQEA FEL+TSEASY+KSL +L  HF+ +  L    IL  ++   LF NV  V
Sbjct: 258 LQPEETKLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 315

Query: 62  RKCSERLLAALEQCWQDSILL 82
              SER L  LE   +++I++
Sbjct: 316 MAVSERFLLELEHRMEENIVI 336

Acts as a guanine nucleotide exchange factor (GEF) which differentially activates the GTPases RHOA, RAC1 and CDC42. Plays a role in axon guidance regulating ephrin-induced growth cone collapse and dendritic spine morphogenesis. Upon activation by ephrin through EPHA4, the GEF activity switches toward RHOA resulting in its activation. Activated RHOA promotes cone retraction at the expense of RAC1- and CDC42-stimulated growth cone extension.

Rattus norvegicus (taxid: 10116)

>sp|Q8BWA8|ARHGJ_MOUSE Rho guanine nucleotide exchange factor 19 OS=Mus musculus GN=Arhgef19 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 8   KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
           KLQEAKFELITSEASY  SL+V   HF+ S  L +   L   D++ LF  +  V+  SER
Sbjct: 376 KLQEAKFELITSEASYIHSLSVAVGHFLGSVELSEC--LGTQDKQWLFSKLPEVKSTSER 433

Query: 68  LLAALEQCWQDSIL 81
            L  LEQ  +  +L
Sbjct: 434 FLHDLEQRLEADVL 447

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase.

Mus musculus (taxid: 10090)

>sp|Q5FWH6|ARHGF_MOUSE Rho guanine nucleotide exchange factor 15 OS=Mus musculus GN=Arhgef15 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           +L   ER++QE+ FE++TSEASY +SL +L   F+ S  L D   L+  D   LF NV  
Sbjct: 418 SLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALRDT--LTPRDHHTLFSNVQR 475

Query: 61  VRKCSERLLAAL 72
           V+  SER L  L
Sbjct: 476 VQSVSERFLGTL 487

Specific GEF for RhoA activation. Does not activate RAC1 or CDC42. Regulates vascular smooth muscle contractility. Negatively regulates excitatory synapse development by suppressing the synapse-promoting activity of EPHB2.

Mus musculus (taxid: 10090)

>sp|Q8CHT1|NGEF_MOUSE Ephexin-1 OS=Mus musculus GN=Ngef PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
           L   E +LQEA FEL+TSEASY+KSL +L  HF+ +  L    IL  ++   LF NV  V
Sbjct: 267 LQPEEIRLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 324

Query: 62  RKCSERLLAALEQCWQDSILL 82
              SER L  LE   +++I++
Sbjct: 325 MAVSERFLLELEHRMEENIVI 345

Acts as a guanine nucleotide exchange factor (GEF) which differentially activates the GTPases RHOA, RAC1 and CDC42. Plays a role in axon guidance regulating ephrin-induced growth cone collapse and dendritic spine morphogenesis. Upon activation by ephrin through EPHA4, the GEF activity switches toward RHOA resulting in its activation. Activated RHOA promotes cone retraction at the expense of RAC1- and CDC42-stimulated growth cone extension.

Mus musculus (taxid: 10090)

>sp|Q5RDX5|NGEF_PONAB Ephexin-1 OS=Pongo abelii GN=NGEF PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
           L   E KLQEA FEL+TSEASY+KSL +L  HF+ +  +    IL  ++   LF NV  V
Sbjct: 266 LQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFMENERIR--KILHPSEAHILFSNVLDV 323

Query: 62  RKCSERLLAALEQCWQDSILL 82
              SER L  LE   +++I++
Sbjct: 324 LAVSERFLLELEHRMEENIVI 344

Acts as a guanine nucleotide exchange factor (GEF) which differentially activates the GTPases RHOA, RAC1 and CDC42. Plays a role in axon guidance regulating ephrin-induced growth cone collapse and dendritic spine morphogenesis. Upon activation by ephrin through EPHA4, the GEF activity switches toward RHOA resulting in its activation. Activated RHOA promotes cone retraction at the expense of RAC1- and CDC42-stimulated growth cone extension.

Pongo abelii (taxid: 9601)

>sp|Q8N5V2|NGEF_HUMAN Ephexin-1 OS=Homo sapiens GN=NGEF PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
           L   E KLQEA FEL+TSEASY+KSL +L  HF+ +  +    IL  ++   LF NV  V
Sbjct: 267 LQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFMENERIR--KILHPSEAHILFSNVLDV 324

Query: 62  RKCSERLLAALEQCWQDSILL 82
              SER L  LE   +++I++
Sbjct: 325 LAVSERFLLELEHRMEENIVI 345

Acts as a guanine nucleotide exchange factor (GEF) which differentially activates the GTPases RHOA, RAC1 and CDC42. Plays a role in axon guidance regulating ephrin-induced growth cone collapse and dendritic spine morphogenesis. Upon activation by ephrin through EPHA4, the GEF activity switches toward RHOA resulting in its activation. Activated RHOA promotes cone retraction at the expense of RAC1- and CDC42-stimulated growth cone extension.

Homo sapiens (taxid: 9606)

>sp|Q96DR7|ARHGQ_HUMAN Rho guanine nucleotide exchange factor 26 OS=Homo sapiens GN=ARHGEF26 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           T+   ERK QEA FE+I+SE SY  SL +L + F  S  L D   ++K +R HLF N+T 
Sbjct: 432 TVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELSDT--MTKTERHHLFSNITD 489

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V + S++    LE   Q++I +
Sbjct: 490 VCEASKKFFIELEARHQNNIFI 511

Activates RhoG GTPase by promoting the exchange of GDP by GTP. Required for the formation of membrane ruffles during macropinocytosis. Required for the formation of cup-like structures during trans-endothelial migration of leukocytes. In case of Salmonella enterica infection, activated by SopB, which induces cytoskeleton rearrangements and promotes bacterial entry.

Homo sapiens (taxid: 9606)

>sp|Q12774|ARHG5_HUMAN Rho guanine nucleotide exchange factor 5 OS=Homo sapiens GN=ARHGEF5 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 6    ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
            ++KLQE KFELI SEASY +SL +   HF  S  L     LS  + + LF  +  VR  S
Sbjct: 1172 DQKLQEVKFELIVSEASYLRSLNIAVDHFQLSTSLRAT--LSNQEHQWLFSRLQDVRDVS 1229

Query: 66   ERLLAALEQCWQDSIL 81
               L+ LE+ ++++I 
Sbjct: 1230 ATFLSDLEENFENNIF 1245

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
328714644	1514	PREDICTED: hypothetical protein LOC10016	0.987	0.054	0.756	9e-27
157118595	867	guanine nucleotide exchange factor [Aede	0.987	0.094	0.560	4e-20
170065517	1017	guanine nucleotide exchange factor [Cule	0.987	0.080	0.560	4e-20
312371885	1103	hypothetical protein AND_20884 [Anophele	0.987	0.074	0.560	4e-20
158285651	1188	AGAP007452-PB [Anopheles gambiae str. PE	0.987	0.069	0.548	2e-19
195169850	1074	GL20865 [Drosophila persimilis] gi|19410	1.0	0.077	0.578	2e-19
125977578	1074	GA17694 [Drosophila pseudoobscura pseudo	1.0	0.077	0.578	2e-19
158285649	2737	AGAP007452-PA [Anopheles gambiae str. PE	0.987	0.029	0.548	3e-19
194750560	1049	GF23948 [Drosophila ananassae] gi|190624	0.987	0.078	0.573	5e-19
195494944	1047	GE19893 [Drosophila yakuba] gi|194181157	0.987	0.078	0.573	7e-19

>gi|328714644|ref|XP_001945953.2| PREDICTED: hypothetical protein LOC100168852 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/82 (75%), Positives = 70/82 (85%)

Query: 1    TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
            +L   ERKLQEAKFELITSEASYFKSLT+LEKHFI S  ++D  ILSK D+K LFGNV  
Sbjct: 1053 SLTPRERKLQEAKFELITSEASYFKSLTILEKHFINSHSMNDDTILSKKDQKILFGNVNP 1112

Query: 61   VRKCSERLLAALEQCWQDSILL 82
            VRKCSE+LLAALE+CWQD+ILL
Sbjct: 1113 VRKCSEKLLAALEKCWQDNILL 1134

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118595|ref|XP_001659169.1| guanine nucleotide exchange factor [Aedes aegypti] gi|108883231|gb|EAT47456.1| AAEL001398-PA, partial [Aedes aegypti]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL   E++LQEAKFE++TSEASY KSL +L+ HFI  P   DV +L+ ++RK LF N+  
Sbjct: 404 TLTPTEKRLQEAKFEILTSEASYLKSLNLLKTHFINHPAFRDVKVLTSSERKTLFSNIIP 463

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V++CS+RLL  LE CWQD+I+L
Sbjct: 464 VQECSDRLLCDLENCWQDNIML 485

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065517|ref|XP_001867972.1| guanine nucleotide exchange factor [Culex quinquefasciatus] gi|167862491|gb|EDS25874.1| guanine nucleotide exchange factor [Culex quinquefasciatus]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL   E++LQEAKFE++TSEASY KSL +L  HFI  P   DV +L+ ++RK LF N+  
Sbjct: 557 TLTPTEKRLQEAKFEILTSEASYLKSLNLLRSHFINHPAFRDVKVLTSSERKTLFSNIIP 616

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V++CS+RLL  LE CWQD+I+L
Sbjct: 617 VQECSDRLLCDLENCWQDNIML 638

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371885|gb|EFR19956.1| hypothetical protein AND_20884 [Anopheles darlingi]

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL   E++LQEAKFE++TSEASY KSL +L  HF+  P   DV ILS ++RK LF ++  
Sbjct: 609 TLTPTEKRLQEAKFEILTSEASYLKSLNLLRTHFVNHPAFRDVRILSSSERKTLFSSIIP 668

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V++CS+RLL  LE CWQD+I+L
Sbjct: 669 VQECSDRLLCDLENCWQDNIML 690

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285651|ref|XP_308411.4| AGAP007452-PB [Anopheles gambiae str. PEST] gi|157020095|gb|EAA04614.4| AGAP007452-PB [Anopheles gambiae str. PEST]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL   E++LQEAKFE++TSEASY KSL +L  HF+  P   D  ILS ++RK LF ++  
Sbjct: 684 TLTPTEKRLQEAKFEILTSEASYLKSLNLLRTHFVNHPAFRDTRILSSSERKTLFSSIIP 743

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V++CS+RLL  LE CWQD+I+L
Sbjct: 744 VQECSDRLLCDLENCWQDNIML 765

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195169850|ref|XP_002025727.1| GL20865 [Drosophila persimilis] gi|194109220|gb|EDW31263.1| GL20865 [Drosophila persimilis]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 60/83 (72%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL + ER LQEAKFE+ITSEASY KSLT+L +HF+ +    D ++LS  DRK LF  +  
Sbjct: 614 TLKSRERSLQEAKFEIITSEASYLKSLTLLRRHFMNNSAFVDSSVLSSQDRKELFSYIVP 673

Query: 61  VRKCSERLLAALEQCWQDSILLQ 83
           V +CSERLL  LE CWQD+I+L 
Sbjct: 674 VHECSERLLTELECCWQDNIMLH 696

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125977578|ref|XP_001352822.1| GA17694 [Drosophila pseudoobscura pseudoobscura] gi|54641573|gb|EAL30323.1| GA17694 [Drosophila pseudoobscura pseudoobscura]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 60/83 (72%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL + ER LQEAKFE+ITSEASY KSLT+L +HF+ +    D ++LS  DRK LF  +  
Sbjct: 614 TLKSRERSLQEAKFEIITSEASYLKSLTLLRRHFMNNSAFVDSSVLSSQDRKELFSYIVP 673

Query: 61  VRKCSERLLAALEQCWQDSILLQ 83
           V +CSERLL  LE CWQD+I+L 
Sbjct: 674 VHECSERLLTELECCWQDNIMLH 696

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285649|ref|XP_001687921.1| AGAP007452-PA [Anopheles gambiae str. PEST] gi|157020094|gb|EDO64570.1| AGAP007452-PA [Anopheles gambiae str. PEST]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query: 1    TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
            TL   E++LQEAKFE++TSEASY KSL +L  HF+  P   D  ILS ++RK LF ++  
Sbjct: 2233 TLTPTEKRLQEAKFEILTSEASYLKSLNLLRTHFVNHPAFRDTRILSSSERKTLFSSIIP 2292

Query: 61   VRKCSERLLAALEQCWQDSILL 82
            V++CS+RLL  LE CWQD+I+L
Sbjct: 2293 VQECSDRLLCDLENCWQDNIML 2314

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194750560|ref|XP_001957598.1| GF23948 [Drosophila ananassae] gi|190624880|gb|EDV40404.1| GF23948 [Drosophila ananassae]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 58/82 (70%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL + ER LQEAKFE+ITSEASY KSL +L +HF+      D ++LS  DRK LF  +  
Sbjct: 588 TLTSRERNLQEAKFEIITSEASYLKSLNLLRRHFMNHSAFLDTSVLSAKDRKALFSYIVP 647

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V +CSERLL  LE CWQD+I+L
Sbjct: 648 VHECSERLLTELEACWQDNIML 669

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494944|ref|XP_002095056.1| GE19893 [Drosophila yakuba] gi|194181157|gb|EDW94768.1| GE19893 [Drosophila yakuba]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 58/82 (70%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           TL + ER LQEAKFE+ITSEASY KSL +L +HF+      D ++LS  DRK LF  +  
Sbjct: 586 TLTSRERSLQEAKFEIITSEASYLKSLNLLRRHFMNHSAFLDTSVLSAKDRKALFSYIVP 645

Query: 61  VRKCSERLLAALEQCWQDSILL 82
           V +CSERLL  LE CWQD+I+L
Sbjct: 646 VHECSERLLTELEACWQDNIML 667

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
WB|WBGene00019487	1136	ephx-1 [Caenorhabditis elegans	0.927	0.067	0.548	2.6e-14
UNIPROTKB|G3V856	616	Ngef "Neuronal guanine nucleot	0.951	0.128	0.456	7.1e-10
UNIPROTKB|Q8IW93	802	ARHGEF19 "Rho guanine nucleoti	0.951	0.098	0.469	8e-10
UNIPROTKB|F1SUS7	805	ARHGEF19 "Uncharacterized prot	0.951	0.098	0.469	8.1e-10
UNIPROTKB|F1PFV4	675	NGEF "Uncharacterized protein"	0.951	0.117	0.456	8.1e-10
UNIPROTKB|E1BQ24	807	E1BQ24 "Uncharacterized protei	0.951	0.097	0.469	8.1e-10
RGD|1309055	701	Ngef "neuronal guanine nucleot	0.951	0.112	0.456	8.5e-10
UNIPROTKB|F1NRP1	533	NGEF "Uncharacterized protein"	0.951	0.148	0.456	1.2e-09
ZFIN|ZDB-GENE-060810-103	937	im:7158374 "im:7158374" [Danio	0.951	0.084	0.419	1.3e-09
ZFIN|ZDB-GENE-090313-243	958	arhgef19 "Rho guanine nucleoti	0.891	0.077	0.473	1.3e-09

WB|WBGene00019487 ephx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 197 (74.4 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 45/82 (54%), Positives = 59/82 (71%)

Query:     6 ERKL-QEAKFELITSEASYFKSLTVLEKHFIASPLL----DDVNILSKNDRKHLFGNVTA 60
             E KL QEA FE+ITSEASY +SL VL  HF+ASP +      +++LS +DRKHLF N+ A
Sbjct:   655 ECKLRQEAYFEVITSEASYLRSLNVLITHFMASPQMLGSKSALSVLSDSDRKHLFSNIFA 714

Query:    61 VRKCSERLLAALEQCWQDSILL 82
             VR CSERLL  LE   +++++L
Sbjct:   715 VRDCSERLLCDLETRLEENLIL 736

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|G3V856 Ngef "Neuronal guanine nucleotide exchange factor (Predicted)" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 37/81 (45%), Positives = 49/81 (60%)

Query:     2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
             L   E KLQEA FEL+TSEASY+KSL +L  HF+ +  L    IL  ++   LF NV  V
Sbjct:   173 LQPEETKLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 230

Query:    62 RKCSERLLAALEQCWQDSILL 82
                SER L  LE   +++I++
Sbjct:   231 MAVSERFLLELEHRMEENIVI 251

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009987 "cellular process" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

UNIPROTKB|Q8IW93 ARHGEF19 "Rho guanine nucleotide exchange factor 19" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query:     1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
             TL   + KLQEAKFELITSEASY  SL+V   HF+ S  L +   L   D++ LF  +  
Sbjct:   369 TLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSAELSEC--LGAQDKQWLFSKLPE 426

Query:    61 VRKCSERLLAALEQCWQDSIL 81
             V+  SER L  LEQ  +  +L
Sbjct:   427 VKSTSERFLQDLEQRLEADVL 447

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IGI

UNIPROTKB|F1SUS7 ARHGEF19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 153 (58.9 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query:     1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
             TL   + KLQEAKFELITSEASY  SL+V   HF+ S  L +   L   D++ LF  +  
Sbjct:   372 TLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSAELSEC--LGAQDKQWLFSKLPE 429

Query:    61 VRKCSERLLAALEQCWQDSIL 81
             V+  SER L  LEQ  +  +L
Sbjct:   430 VKSTSERFLQDLEQRLEADVL 450

GO:0042060 "wound healing" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1PFV4 NGEF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 37/81 (45%), Positives = 51/81 (62%)

Query:     2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
             L   E KLQEA FEL+TSEASY+KSL++L  HF+ +  L    IL  ++   LF NV  V
Sbjct:   232 LQPEEIKLQEAMFELVTSEASYYKSLSLLVSHFMENERLK--KILHPSEAHILFSNVLDV 289

Query:    62 RKCSERLLAALEQCWQDSILL 82
                SER L  LE+  +++I++
Sbjct:   290 MAVSERFLLELERRMEENIVI 310

GO:0009987 "cellular process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|E1BQ24 E1BQ24 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query:     1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
             TL   + KLQEAKFELITSEASY  SL+V   HF+ S  L +   L   D++ LF  +  
Sbjct:   374 TLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSAELSEC--LGTQDKQWLFSKLPE 431

Query:    61 VRKCSERLLAALEQCWQDSIL 81
             V+  SER L  LEQ  +  +L
Sbjct:   432 VKSTSERFLQDLEQRLEADVL 452

GO:0042060 "wound healing" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

RGD|1309055 Ngef "neuronal guanine nucleotide exchange factor" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 37/81 (45%), Positives = 49/81 (60%)

Query:     2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
             L   E KLQEA FEL+TSEASY+KSL +L  HF+ +  L    IL  ++   LF NV  V
Sbjct:   258 LQPEETKLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 315

Query:    62 RKCSERLLAALEQCWQDSILL 82
                SER L  LE   +++I++
Sbjct:   316 MAVSERFLLELEHRMEENIVI 336

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0009987 "cellular process" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=ISO;ISS;IDA

GO:0046875 "ephrin receptor binding" evidence=ISO;IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS;IDA

GO:0061002 "negative regulation of dendritic spine morphogenesis" evidence=ISO;ISS;IDA

UNIPROTKB|F1NRP1 NGEF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 37/81 (45%), Positives = 51/81 (62%)

Query:     2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
             L   E KLQEA FEL+TSEASY KSL +L  HF+ +  L    IL +++   LF NV  V
Sbjct:    96 LQPDEIKLQEAMFELVTSEASYCKSLNLLVSHFMENERLK--KILHQSEAHILFSNVLDV 153

Query:    62 RKCSERLLAALEQCWQDSILL 82
             +  SER L  LE+  +++I++
Sbjct:   154 KAVSERFLLDLERRVEENIVI 174

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009987 "cellular process" evidence=IEA

ZFIN|ZDB-GENE-060810-103 im:7158374 "im:7158374" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 34/81 (41%), Positives = 52/81 (64%)

Query:     2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
             L   E K QE+ FE+ITSE SY +SL VL +HF+ S  L++  I+   D+K LF N+  +
Sbjct:   500 LSPEECKYQESMFEVITSEMSYLRSLRVLTEHFVESSELNETLIIM--DKKTLFSNIIRI 557

Query:    62 RKCSERLLAALEQCWQDSILL 82
             ++ SER L  LE+   ++I++
Sbjct:   558 QEVSERFLKDLEERLDENIII 578

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

ZFIN|ZDB-GENE-090313-243 arhgef19 "Rho guanine nucleotide exchange factor (GEF) 19" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 36/76 (47%), Positives = 49/76 (64%)

Query:     6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
             ERKLQEAKFEL+TSEASY +SL++   HF+ S  L +   L   +R+ LF  +  V++ S
Sbjct:   529 ERKLQEAKFELVTSEASYIRSLSIAVDHFMMSSELCEC--LGTQERQWLFSKLPDVKEVS 586

Query:    66 ERLLAALEQCWQDSIL 81
             ER L  LE+  +  IL
Sbjct:   587 ERFLQDLERRLEGDIL 602

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
smart00325	180	smart00325, RhoGEF, Guanine nucleotide exchange fa	2e-11
pfam00621	179	pfam00621, RhoGEF, RhoGEF domain	5e-11
cd00160	181	cd00160, RhoGEF, Guanine nucleotide exchange facto	9e-11
COG5422	1175	COG5422, ROM1, RhoGEF, Guanine nucleotide exchange	1e-04

>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 14 FELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73
           EL+ +E +Y + L +L + F+  PL  ++ +LS N+ + LFGN+  + +     L  LE
Sbjct: 3  KELLQTERNYVRDLKLLVEVFLK-PLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELE 61

Query: 74 QCWQDS 79
          +  ++ 
Sbjct: 62 ERIEEW 67

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage. Length = 180

>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain

 Score = 54.9 bits (133), Expect = 5e-11
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 14 FELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73
           EL+ +E SY + L +L + F+    L +  ILS+ + K +F N+  + +  +  L  LE
Sbjct: 3  QELLQTERSYVRDLKILVEVFLKP--LRESPILSEEEIKTIFSNIEEILELHQEFLEELE 60

Query: 74 QCWQDSILLQ 83
          +  ++   +Q
Sbjct: 61 ERLEEWPDIQ 70

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179

>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

 Score = 54.2 bits (131), Expect = 9e-11
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 9  LQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERL 68
           QE   EL+ +E +Y + L +L + F+  PL  ++  LS  + + LFGN+  + +     
Sbjct: 1  RQEVIKELLQTERNYVRDLKLLVEVFLK-PLDKELLPLSPEEVELLFGNIEEIYEFHRIF 59

Query: 69 LAALEQC 75
          L +LE+ 
Sbjct: 60 LKSLEER 66

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Length = 181

>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR----KHLFGN 57
           L   E K QEA +E+I +E  + K L  L   +I    L++ NI+ +N R    KH+F N
Sbjct: 478 LPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIK--PLEESNIIPENARRNFIKHVFAN 535

Query: 58  VTAVRKCSERLLAALEQ 74
           +  +   + +LL AL  
Sbjct: 536 INEIYAVNSKLLKALTN 552

Length = 1175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG3523|consensus	695		99.96
KOG3521|consensus	846		99.64
KOG4305|consensus	1029		99.61
cd00160	181	RhoGEF Guanine nucleotide exchange factor for Rho/	99.48
KOG3520|consensus	1167		99.45
COG5422	1175	ROM1 RhoGEF, Guanine nucleotide exchange factor fo	99.41
smart00325	180	RhoGEF Guanine nucleotide exchange factor for Rho/	99.37
PF00621	180	RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho	99.24
KOG2996|consensus	865		98.35
KOG3518|consensus	521		98.2
KOG3522|consensus	925		98.18
KOG3519|consensus	756		98.14
KOG4424|consensus	623		98.09
KOG2070|consensus	661		97.55
KOG0689|consensus	448		97.27
KOG4240|consensus	1025		96.76
KOG3531|consensus	1036		96.16

>KOG3523|consensus

Probab=99.96  E-value=1.2e-29  Score=197.81  Aligned_cols=81  Identities=53%  Similarity=0.786  Sum_probs=77.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI   80 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~   80 (83)
                      |||++|||+|||+||+||||+||++||+++++|||.+..++  .+|++.|+|+|||||.+|++||+|||.|||+|+++||
T Consensus       250 tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~--~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~ni  327 (695)
T KOG3523|consen  250 TLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELR--STLSASDRHHLFSNIQDVREVSERFLCDLEARLEENI  327 (695)
T ss_pred             ccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHH--HhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence            68999999999999999999999999999999999997776  5899999999999999999999999999999999999


Q ss_pred             cCC
Q psy5779          81 LLQ   83 (83)
Q Consensus        81 ~i~   83 (83)
                      +|.
T Consensus       328 ~i~  330 (695)
T KOG3523|consen  328 FID  330 (695)
T ss_pred             hhh
Confidence            873

>KOG3521|consensus

Probab=99.64  E-value=1.6e-16  Score=125.98  Aligned_cols=72  Identities=26%  Similarity=0.388  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCc-CCCCCCCCccccccccccchhHHHHHHHHHHHHH
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASP-LLDDVNILSKNDRKHLFGNVTAVRKCSERLLAAL   72 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~-~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~L   72 (83)
                      +||++++|+|||||||+|||..|+|.|.++++.|..|. .+|+.|+|...+...||+||..++.+|.+|+...
T Consensus       170 slS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~  242 (846)
T KOG3521|consen  170 SLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQV  242 (846)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999986 7899999999999999999999999999998753

>KOG4305|consensus

Probab=99.61  E-value=2.3e-16  Score=129.31  Aligned_cols=81  Identities=30%  Similarity=0.431  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCcccc----ccccccchhHHHHHHHHHHHHHHHhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND----RKHLFGNVTAVRKCSERLLAALEQCW   76 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~----~~~LFsNi~~v~~~s~~fl~~Le~r~   76 (83)
                      +||++|+||||+|||+|.||+.|+++|+++++.|+++  |-+++++++.+    ...+|.|+.+++.+|++||.+|..|.
T Consensus       328 ~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kp--l~~S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~  405 (1029)
T KOG4305|consen  328 SLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKP--LLESSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQ  405 (1029)
T ss_pred             hcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhCh--HhhhccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            4899999999999999999999999999999999999  77778999999    89999999999999999999999999


Q ss_pred             hhCccCC
Q psy5779          77 QDSILLQ   83 (83)
Q Consensus        77 ~~~~~i~   83 (83)
                      +.+.+|+
T Consensus       406 k~~G~V~  412 (1029)
T KOG4305|consen  406 KLSGVVE  412 (1029)
T ss_pred             ccCCccc
Confidence            9887653

>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

Probab=99.48  E-value=4.9e-14  Score=93.70  Aligned_cols=69  Identities=29%  Similarity=0.448  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCC-CccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           9 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNI-LSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~-l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      ||++++|+++||++|+++|+++.+.|+.+  +.+.+. ++..+.+.+|+|+.+++.+|+.|+.+|+.+..+.
T Consensus         1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~--l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~   70 (181)
T cd00160           1 RQEVIKELLQTERNYVRDLKLLVEVFLKP--LDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEW   70 (181)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999999999999998  654444 7889999999999999999999999999987653

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

>KOG3520|consensus

Probab=99.45  E-value=1.6e-13  Score=113.53  Aligned_cols=79  Identities=19%  Similarity=0.342  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI   80 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~   80 (83)
                      ++++.+.||||+|+||+.||+.+||.|.|+..+|+.+  |...++++..+...||+|+++++++|..|++.|.+|.+++.
T Consensus       383 ~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~--m~~e~~~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e~~  460 (1167)
T KOG3520|consen  383 GLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQP--MMEELLFPQEELNKLFPCLDELIEIHSSFLQRLKERRKESL  460 (1167)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4688999999999999999999999999999999999  88778999999999999999999999999999999988886


Q ss_pred             c
Q psy5779          81 L   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus       461 ~  461 (1167)
T KOG3520|consen  461 V  461 (1167)
T ss_pred             c
Confidence            5

>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

Probab=99.41  E-value=1e-13  Score=112.66  Aligned_cols=81  Identities=32%  Similarity=0.471  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCcccc----ccccccchhHHHHHHHHHHHHHHHhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND----RKHLFGNVTAVRKCSERLLAALEQCW   76 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~----~~~LFsNi~~v~~~s~~fl~~Le~r~   76 (83)
                      +++.+|+||||||+|+++||+.||++|+++.|.|+++  |.++.++++..    .+..|.||.+|..+|.+|+.+|..|+
T Consensus       477 sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~--L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ  554 (1175)
T COG5422         477 SLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKP--LEESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQ  554 (1175)
T ss_pred             hCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHH--HHHcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc
Confidence            4789999999999999999999999999999999999  77677887774    47899999999999999999999999


Q ss_pred             hhCccCC
Q psy5779          77 QDSILLQ   83 (83)
Q Consensus        77 ~~~~~i~   83 (83)
                      --.|+|+
T Consensus       555 ~lsPiv~  561 (1175)
T COG5422         555 CLSPIVN  561 (1175)
T ss_pred             ccccccc
Confidence            8887763

>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Probab=99.37  E-value=6.3e-13  Score=88.27  Aligned_cols=66  Identities=27%  Similarity=0.457  Sum_probs=60.2

Q ss_pred             HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCC-CCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779          12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVN-ILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus        12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~-~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      +++|+++||++|+++|+++.+.|+.+  +...+ +++..+.+.+|+|+.+++.+|+.|+.+|+.+..+.
T Consensus         1 ii~Eli~tE~~Yv~~L~~l~~~y~~~--l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~   67 (180)
T smart00325        1 VLKELLQTERNYVRDLKLLVEVFLKP--LKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEW   67 (180)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence            47999999999999999999999998  65544 78999999999999999999999999999998764

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.

>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes

Probab=99.24  E-value=9.7e-12  Score=81.61  Aligned_cols=66  Identities=32%  Similarity=0.515  Sum_probs=59.5

Q ss_pred             HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779          12 AKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus        12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      .++||+.||.+|+++|+++++.|+.+  +.. .+.++..+...+|+|++++..+|+.|+.+|+.+.++.
T Consensus         1 vi~ELi~tE~~y~~~L~~l~~~~~~~--l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~   67 (180)
T PF00621_consen    1 VINELIETERSYVEDLEILVEVFLKP--LRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEW   67 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999998  554 5678899999999999999999999999999986443

Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....

>KOG2996|consensus

Probab=98.35  E-value=8.4e-07  Score=70.95  Aligned_cols=66  Identities=27%  Similarity=0.362  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779           7 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW   76 (83)
Q Consensus         7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~   76 (83)
                      -||--.+.|+-.||+.|.+.|.-+..+||.|  |+  ++|++.|...+|.||+++..++..||.+++-..
T Consensus       196 dkRncClrEi~~TE~kY~~tL~sI~k~f~~P--Lk--~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv  261 (865)
T KOG2996|consen  196 DKRNCCLREIQQTEEKYTQTLESIEKTFMEP--LK--RFLPPADYNIVFINIEELNKLHTALLAEIEYSV  261 (865)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--hcCChhhhheeEecHHHHHHHHHHHHHHhHHHh
Confidence            3555689999999999999999999999999  87  689999999999999999999999999998653

>KOG3518|consensus

Probab=98.20  E-value=2.1e-06  Score=65.31  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHhhcCcC-CCCCCCCccccccccccchhHHHHHHHHHHHHHHHh
Q psy5779          11 EAKFELITSEASYFKSLTVLEKHFIASPL-LDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQC   75 (83)
Q Consensus        11 Eai~Eli~sE~sY~~sL~vl~~~f~~~~~-l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r   75 (83)
                      ...-|++.||+.|+.+|+.+++.|+.+.. -++.--++-..+..||+||++|...|..++++|++.
T Consensus       124 riaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaa  189 (521)
T KOG3518|consen  124 RIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAA  189 (521)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhc
Confidence            35679999999999999999999998831 223333566788999999999999999999999875

>KOG3522|consensus

Probab=98.18  E-value=3.3e-06  Score=69.24  Aligned_cols=65  Identities=23%  Similarity=0.332  Sum_probs=57.2

Q ss_pred             HHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779          13 KFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus        13 i~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      .-+|+.+|.+|+.+|.-+++-|+++  |.+ +.++.+.+++.+|-||++++++++.|+.+|+.|.+..
T Consensus         5 ~~~l~~~Eq~yv~sL~t~vd~y~qp--L~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w   70 (925)
T KOG3522|consen    5 LLQLIDREQSYVESLHTGVDRYVQP--LKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQW   70 (925)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Confidence            4579999999999999999999999  543 3455668999999999999999999999999997754

>KOG3519|consensus

Probab=98.14  E-value=6e-06  Score=67.16  Aligned_cols=74  Identities=26%  Similarity=0.358  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           5 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         5 ~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      ...++.-+|.|++.||+.|+++|+.+...|+.+- .+...-+.....+.+|+||+++..+...|+++|+.....+
T Consensus       333 ~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~-~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~  406 (756)
T KOG3519|consen  333 LDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQ-NKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPE  406 (756)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchh
Confidence            3567778999999999999999999999998872 1111246788899999999999999999999999987654

>KOG4424|consensus

Probab=98.09  E-value=2.8e-06  Score=67.36  Aligned_cols=63  Identities=25%  Similarity=0.429  Sum_probs=54.0

Q ss_pred             HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHH-HHHHHHhh
Q psy5779          12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERL-LAALEQCW   76 (83)
Q Consensus        12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~f-l~~Le~r~   76 (83)
                      ++-|++.||++|+..|.+|.++|.+...+.  ..+++..++.||+||-.|...+..| |..|+.|.
T Consensus        70 iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~--~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~  133 (623)
T KOG4424|consen   70 IAQELLDTERTYVKRLHLLDQVFCRRLLEE--ASIPADVITGLFGNISSIHNFHGQFLLPELEKRI  133 (623)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH
Confidence            899999999999999999999999984333  4789999999999999999999555 55666664

>KOG2070|consensus

Probab=97.55  E-value=0.00021  Score=56.52  Aligned_cols=64  Identities=27%  Similarity=0.435  Sum_probs=60.3

Q ss_pred             HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779          12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus        12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      ++-.+|.||+.|+++|+-+...|+.|  ++.+.+|+..+...|.+|.++|+...+.++..||.+.+
T Consensus       105 VLk~~lesEkey~~eLq~lL~t~L~P--lq~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~  168 (661)
T KOG2070|consen  105 VLKNILESEKEYSKELQTLLSTYLRP--LQTSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTK  168 (661)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhc
Confidence            57789999999999999999999999  88888999999999999999999999999999998863

>KOG0689|consensus

Probab=97.27  E-value=0.00017  Score=56.06  Aligned_cols=71  Identities=28%  Similarity=0.428  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC-CCCccccccccccchhHHHHHHHHH-HHHHHHhhhh
Q psy5779           7 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV-NILSKNDRKHLFGNVTAVRKCSERL-LAALEQCWQD   78 (83)
Q Consensus         7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~-~~l~~~~~~~LFsNi~~v~~~s~~f-l~~Le~r~~~   78 (83)
                      +|+.-++-|++.||.+|+++|...+.+|+.+..-.+- .-|.. ..+.+|+||..+++++..+ +.+++...++
T Consensus        61 ~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg-~~~iifgni~~i~~~h~~~fl~e~e~~~r~  133 (448)
T KOG0689|consen   61 KKRSFVLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRG-KDKIIFGNIKEIYEFHKKEFLPELERCERD  133 (448)
T ss_pred             hhhHHHHHHHHHHHHhhhhccccccccccccccccCCChhccC-CceeeechHHHHHHhhcccCcchHHHhhhC
Confidence            4566699999999999999999999999987321110 01111 2688999999999999977 8888776543

>KOG4240|consensus

Probab=96.76  E-value=0.0032  Score=53.04  Aligned_cols=65  Identities=23%  Similarity=0.444  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhHHHHHHhHHHHHHHhhc---CcCCCC--CCCCccccccccccchhHHHHHHH-HHHHHHHHhh
Q psy5779           9 LQEAKFELITSEASYFKSLTVLEKHFIA---SPLLDD--VNILSKNDRKHLFGNVTAVRKCSE-RLLAALEQCW   76 (83)
Q Consensus         9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~---~~~l~~--~~~l~~~~~~~LFsNi~~v~~~s~-~fl~~Le~r~   76 (83)
                      .-..+.|+|.||+.|+++|.=+.+.+..   ++ +.+  .++|.  -.+.+|+|+.+|.+.+. .||..||...
T Consensus       633 ~~~~m~ellqterayv~~L~~~l~~y~~e~d~~-~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~  703 (1025)
T KOG4240|consen  633 KRHVMRELLQTERAYVRDLEECLEGYLAEMDSP-MKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYE  703 (1025)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhc
Confidence            3457899999999999999998888774   22 221  23444  56889999999999976 7999998753

>KOG3531|consensus

Probab=96.16  E-value=0.0013  Score=54.62  Aligned_cols=63  Identities=25%  Similarity=0.358  Sum_probs=51.9

Q ss_pred             HHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779          13 KFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus        13 i~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      ..|+..||++|.++|.|+..-|...  +-.....+...+..+|.|+..+.+.++.||+++|+|+.
T Consensus       538 ~kel~~tERty~kdleV~tt~Frst--~v~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria  600 (1036)
T KOG3531|consen  538 VKELSDTERTYLKDLEVITTWFRST--VVKEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIA  600 (1036)
T ss_pred             ecccccccccchhccceeeeeecce--eecCcccccchhhhhccCCChhhHHHHHHHHHHHHHHH
Confidence            5689999999999999998666554  22223567778889999999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-18
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	3e-18
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	5e-18
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	2e-17
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	5e-17
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-16
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	2e-15
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	2e-15
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-11
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	2e-11
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	1e-09
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	2e-09
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	8e-09
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	9e-09
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	6e-08
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	7e-08
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	8e-06
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	7e-05
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	1e-04
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	7e-04

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score = 76.4 bits (188), Expect = 2e-18
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   E   QE   EL  +EAS+ ++L VL+  F     +   N++ + +   LF N+  
Sbjct: 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPE 71

Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
          + +       A+++  ++  +++
Sbjct: 72 LIEIHNSWCEAMKKLREEGPIIK 94

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 76.3 bits (187), Expect = 3e-18
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           +L   + K QE   EL+ +EA++ + L VL   F     + +       + +++F ++  
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDE 230

Query: 61  VRKCSERLLAALEQCWQDS 79
           + +     L  L +  Q+S
Sbjct: 231 LIEVHSLFLDRLMKRRQES 249

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418

 Score = 75.3 bits (185), Expect = 5e-18
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
            L   E   QE   EL  +EAS+ ++L VL+  F     +   N++ + +   LF N+  
Sbjct: 56  GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPE 113

Query: 61  VRKCSERLLAALEQCWQDSILLQ 83
           + +       A+++  ++  +++
Sbjct: 114 LIEIHNSWCEAMKKLREEGPIIK 136

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
          +L   + K QE   EL+ +EA++ + L VL   F     + +       + +++F ++  
Sbjct: 20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDE 77

Query: 61 VRKCSERLLAALEQCWQDS 79
          + +     L  L +  Q+S
Sbjct: 78 LIEVHSLFLDRLMKRRQES 96

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385

 Score = 72.6 bits (178), Expect = 5e-17
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   E K QE   EL  +E ++ ++L VL++ F     +    ILS ++ + +F N+  
Sbjct: 17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLED 74

Query: 61 VRKCSERLLAALEQCWQDS 79
          + +    L   ++   + +
Sbjct: 75 ILQLHIGLNEQMKAVRKRN 93

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 70.8 bits (173), Expect = 2e-16
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
          T+   ERK Q    ELI +E  Y   L ++ + F     + +   L++ +   +F N   
Sbjct: 20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKR--MAESGFLTEGEMALIFVNWKE 77

Query: 61 VRKCSERLLAALEQCWQDS 79
          +   + +LL AL    +  
Sbjct: 78 LIMSNTKLLKALRVRKKTG 96

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
            L   ERK Q    ELI +E +Y   L ++ + F     L +  +L++ +   +F N   
Sbjct: 75  MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LTESELLTEKEVAMIFVNWKE 132

Query: 61  VRKCSERLLAALEQCWQDS 79
           +  C+ +LL AL    + S
Sbjct: 133 LIMCNIKLLKALRVRKKMS 151

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L A E K QEA FEL   E    + L + +K +     +  ++I+++ +   +FG + +
Sbjct: 12 VLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDP--MLKLSIMTEQELNQIFGTLDS 69

Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
          +    E LL+ L    +     +
Sbjct: 70 LIPLHEELLSQLRDVRKPDGSTE 92

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 1   TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
              + ++       E++++E  Y K L  + + ++        ++ S+   + +FGN+  
Sbjct: 111 AQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVR-QCRKRADMFSEEQLRTIFGNIED 169

Query: 61  VRKCSERLLAALEQCWQDS 79
           + +C +  + ALEQ +   
Sbjct: 170 IYRCQKAFVKALEQRFNRE 188

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 2   LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
           L   ++       E++++E  Y K L  + + ++        ++ S    K +FGN+  +
Sbjct: 35  LQNRDQMRANVINEIMSTERHYIKHLKDICEGYLK-QCRKRRDMFSDEQLKVIFGNIEDI 93

Query: 62  RKCSERLLAALEQCWQDS 79
            +     +  LE+ + + 
Sbjct: 94  YRFQMGFVRDLEKQYNND 111

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
            KL++   EL+ +E +Y K L  L + ++    L     L++++   LFGN+T + +  
Sbjct: 9  ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQ 66

Query: 66 ERLLAALEQCWQDSILLQ 83
             L  LE   +    L+
Sbjct: 67 VEFLKTLEDGVRLVPDLE 84

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
          E+   +     +     Y + L ++ K F   P + +  + S ND +++F  +  + + S
Sbjct: 1  EQTYYDLVKAFMAEIRQYIRELNLIIKVFR-EPFVSNSKLFSANDVENIFSRIVDIHELS 59

Query: 66 ERLLAALEQC 75
           +LL  +E  
Sbjct: 60 VKLLGHIEDT 69

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209

 Score = 48.8 bits (117), Expect = 8e-09
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
          T    +         ++ +E  Y K L  +   ++    L     LS  +  +L GN+  
Sbjct: 6  TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEE 63

Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
          +    + L+ +LE+C +     Q
Sbjct: 64 ICSFQQMLVQSLEECTKLPEAQQ 86

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 49.2 bits (117), Expect = 9e-09
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 3  DAGERKLQEAKFELITSEASYFKSLTVLEKHFIA-------SPLLDDVNILSKNDRKHLF 55
            G+ +      EL++SE +Y + L  L   F             +  + L++ + +   
Sbjct: 17 QGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGL 76

Query: 56 GNVTAVRKCSERLLAALEQCWQD 78
            + A+    + +L  LE+   +
Sbjct: 77 SELPAIHDLHQGILEELEERLSN 99

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 47.0 bits (111), Expect = 6e-08
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 6   ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
             K      E+  +E  Y  +L  +++HF+  PL      L   D + +F N+  + +  
Sbjct: 195 YDKRCCCLREIQQTEEKYTDTLGSIQQHFLK-PLQ---RFLKPQDIEIIFINIEDLLRVH 250

Query: 66  ERLLAALEQCWQDS 79
              L  +++     
Sbjct: 251 THFLKEMKEALGTP 264

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
            K      E+  +E  Y  +L  +++HF+  PL      L   D + +F N+  +    
Sbjct: 23 YDKRCCCLREIQQTEEKYTDTLGSIQQHFMK-PLQ---RFLKPQDMETIFVNIEELFSVH 78

Query: 66 ERLLAALEQCWQDS 79
             L  L+      
Sbjct: 79 THFLKELKDALAGP 92

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354

 Score = 41.0 bits (96), Expect = 8e-06
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 7  RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSE 66
           +      EL+ +E  Y   L  + + ++A+     V    +   + +FGN+  + +   
Sbjct: 11 ERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHR 70

Query: 67 R-LLAALEQCWQD 78
             L  L++C +D
Sbjct: 71 DYFLQELQRCLKD 83

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score = 38.2 bits (88), Expect = 7e-05
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 5   GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKC 64
           GE+   +     +     Y + L ++ K F   P + +  + S ND +++F  +  + + 
Sbjct: 197 GEQTYYDLVKAFMAEIRQYIRELNLIIKVFRE-PFVSNSKLFSANDVENIFSRIVDIHEL 255

Query: 65  SERLLAALEQC 75
           S +LL  +E  
Sbjct: 256 SVKLLGHIEDT 266

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 5  GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILS---KNDRKHLFGNVTAV 61
            R+ +    ELI +E +Y + L      ++   +   V  +     N    +FGN+  +
Sbjct: 6  SARRKEFIMAELIQTEKAYVRDLRECMDTYLW-EMTSGVEEIPPGIVNKELIIFGNMQEI 64

Query: 62 RK-CSERLLAALEQCWQD 78
           +  +   L  LE+  Q 
Sbjct: 65 YEFHNNIFLKELEKYEQL 82

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353

 Score = 35.3 bits (81), Expect = 7e-04
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIA----SPLLDDVNILSKNDRKHLFGNVTAV 61
              +    EL+ +E +Y + L  + + + A      +   ++   +N +  LFGN+  +
Sbjct: 9  AILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEI 68

Query: 62 RKC-SERLLAALEQCWQD 78
              +   L  LE C   
Sbjct: 69 YHFHNRIFLRELESCIDC 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.76
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	99.75
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.75
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.74
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	99.73
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	99.71
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	99.69
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	99.68
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	99.68
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.66
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	99.65
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	99.62
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.62
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	99.6
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	99.55
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.52
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	99.48
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.47
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	99.45
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.4

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=99.76  E-value=8.4e-19  Score=127.21  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI   80 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~   80 (83)
                      +|+++|+|||++++||++||++|+++|+++.++|+.+  |+..+++++.+.+.||+||.+|+.+|+.|+.+|+.+.++++
T Consensus        14 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~   91 (368)
T 1xcg_A           14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP   91 (368)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999999998  76667899999999999999999999999999999988765


Q ss_pred             cC
Q psy5779          81 LL   82 (83)
Q Consensus        81 ~i   82 (83)
                      .+
T Consensus        92 ~~   93 (368)
T 1xcg_A           92 II   93 (368)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=99.75  E-value=9.1e-19  Score=126.32  Aligned_cols=77  Identities=26%  Similarity=0.412  Sum_probs=72.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      +|+++|+|||++++||++||++|+++|++++++|+.+  +...+++++.+.+.||+||++|+.+|+.|+.+|+.|.+++
T Consensus        12 ~l~~~~~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~   88 (346)
T 2z0q_A           12 VLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDP--MLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPD   88 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC
Confidence            5899999999999999999999999999999999998  6655789999999999999999999999999999998754

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=99.75  E-value=1.9e-18  Score=127.25  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI   80 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~   80 (83)
                      +|+++|+|||++++|||+||++|+++|++++++|+.+  ++..++++..+.+.||+||.+|+.+|+.|+.+|+.+.++..
T Consensus        56 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~  133 (418)
T 3t06_A           56 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP  133 (418)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999999999999998  76667899999999999999999999999999999988765


Q ss_pred             cC
Q psy5779          81 LL   82 (83)
Q Consensus        81 ~i   82 (83)
                      .+
T Consensus       134 ~~  135 (418)
T 3t06_A          134 II  135 (418)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.74  E-value=1.7e-18  Score=121.43  Aligned_cols=75  Identities=28%  Similarity=0.404  Sum_probs=70.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      ++++.|+|||++++||++||++|+++|+++.++|+.+  +...++++..+.+.||+|+.+|+.+|+.|+.+|+.|..
T Consensus        75 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~  149 (283)
T 3jv3_A           75 MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKK  149 (283)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH--HHTTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHhh--ccccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999998  66667899999999999999999999999999998875

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=99.73  E-value=2.6e-18  Score=124.80  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=70.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      +++++|+|||++++||++||++|+++|++++++|+.+  +...++++..+.+.||+||.+|+.+|+.|+.+|+.|..+.
T Consensus        20 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~   96 (377)
T 3p6a_A           20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQES   96 (377)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcc
Confidence            4789999999999999999999999999999999998  6666789999999999999999999999999999887654

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1

Probab=99.71  E-value=1.3e-17  Score=113.75  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           3 DAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         3 s~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      ...+++||++++||++||++|+++|+++.++|+.+  ++..++++..+.+.||+||.+|+.+|+.|+.+|+.+.+..
T Consensus         8 ~~~~~~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~p--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~   82 (209)
T 1by1_A            8 AINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLP   82 (209)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCC
Confidence            34567899999999999999999999999999999  6666789999999999999999999999999999998754

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=99.69  E-value=1.7e-17  Score=121.25  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=68.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW   76 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~   76 (83)
                      +|+++|+|||++++||++||++|+++|++++++|+.+  |...++++..+.+.||+||.+|+.+| .||.+|+.+.
T Consensus        17 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~   89 (385)
T 1txd_A           17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLEDILQLH-IGLNEQMKAV   89 (385)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHH
Confidence            5899999999999999999999999999999999998  66567899999999999999999999 9999999864

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=99.68  E-value=3.1e-17  Score=125.68  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +|+++|+|||++|+|||+||++|+++|++++++|+.+  |...++++..+.+.||+||.+|+.+|+.||.+|+.|..+
T Consensus       173 ~l~~~e~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~p--l~~~~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~  248 (536)
T 3odw_A          173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQE  248 (536)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999998  665678999999999999999999999999999998765

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=99.68  E-value=4.9e-17  Score=118.54  Aligned_cols=75  Identities=27%  Similarity=0.447  Sum_probs=68.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +||+ +.|||++++||++||++|+++|+++.++|+.+  |+..++++..+.+.||+||.+|+.+|..|+.+|+.+.+.
T Consensus         5 ~ls~-~~kr~~vi~Eli~TE~~Yv~~L~~l~~~y~~p--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~   79 (377)
T 1foe_A            5 QLSD-ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRL   79 (377)
T ss_dssp             CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHTSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            4675 77999999999999999999999999999998  665578999999999999999999999999999998764

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.66  E-value=6.3e-18  Score=126.29  Aligned_cols=75  Identities=25%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      +||++|+|||++|+||++||++|+++|+++.++|+.+  +.+.++++..+.+.||+||++|+.+|+.|+.+|+.|.+
T Consensus        20 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~   94 (510)
T 3jzy_A           20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKR--MAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKK   94 (510)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999998  77678899999999999999999999999999998865

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=99.65  E-value=1.2e-16  Score=118.16  Aligned_cols=76  Identities=17%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +++++++|||++++||++||++|+++|+++.++|+.+  +. ..++++..+.+.||+||.+|+.+|..|+.+|+.|...
T Consensus        34 ~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~p--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~  110 (402)
T 2dfk_A           34 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQ--CRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNN  110 (402)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHcc
Confidence            4788999999999999999999999999999999988  53 3468899999999999999999999999999999753

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=99.62  E-value=3.8e-16  Score=114.94  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           3 DAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         3 s~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      .++++|||++++||++||++|+++|++++++|+.+  |+  .++++.+.+.||+||++|+.+|+.|+.+|+.|..+
T Consensus        20 ~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~--~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~   91 (406)
T 2vrw_B           20 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKP--LQ--RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAG   91 (406)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HT--TTSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HhCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999998  65  37899999999999999999999999999999864

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.62  E-value=3.4e-16  Score=116.96  Aligned_cols=75  Identities=19%  Similarity=0.438  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         2 ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      ++++++|||++++||++||++|+++|+++.++|+.+  +. ..++++..+.+.||+||.+|+.+|..|+.+|+.|.++
T Consensus       112 ~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~  187 (466)
T 2pz1_A          112 QSSKDQMRTNVINEILSTERDYIKHLRDICEGYVRQ--CRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNR  187 (466)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcc
Confidence            578899999999999999999999999999999987  43 3468899999999999999999999999999999763

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=99.60  E-value=9.3e-16  Score=111.54  Aligned_cols=75  Identities=23%  Similarity=0.386  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC---CCCcc---ccccccccchhHHHHHHH-HHHHHHHH
Q psy5779           2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV---NILSK---NDRKHLFGNVTAVRKCSE-RLLAALEQ   74 (83)
Q Consensus         2 ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~---~~l~~---~~~~~LFsNi~~v~~~s~-~fl~~Le~   74 (83)
                      +++.++|||++++||++||++|+++|++++++|+.+  |.+.   +++|.   .+.+.||+||++|+.+|. .|+.+|+.
T Consensus         5 ~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~p--l~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~   82 (353)
T 1kz7_A            5 EESLAILRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELES   82 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG--GGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999998  5432   25665   478999999999999996 89999999


Q ss_pred             hhhh
Q psy5779          75 CWQD   78 (83)
Q Consensus        75 r~~~   78 (83)
                      |.+.
T Consensus        83 ~~~~   86 (353)
T 1kz7_A           83 CIDC   86 (353)
T ss_dssp             TTTC
T ss_pred             HhcC
Confidence            8753

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=99.55  E-value=3.2e-15  Score=106.66  Aligned_cols=72  Identities=22%  Similarity=0.350  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCcc---ccccccccchhHHHHHHHH-HHHHHHHhhh
Q psy5779           4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSK---NDRKHLFGNVTAVRKCSER-LLAALEQCWQ   77 (83)
Q Consensus         4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~---~~~~~LFsNi~~v~~~s~~-fl~~Le~r~~   77 (83)
                      .+++|||++++||++||++|+++|+++.++|+.+  ++. .+.+++   .+.+.||+||++|+.+|+. |+.+|+.|.+
T Consensus         5 k~~~kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~   81 (311)
T 1nty_A            5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWE--MTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ   81 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHC
Confidence            4689999999999999999999999999999998  432 123443   3678999999999999995 9999999864

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.52  E-value=7.2e-15  Score=113.02  Aligned_cols=71  Identities=18%  Similarity=0.303  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      .+++|||++++||++||++|+++|+++.++|+.+  |++  ++++.+.+.||+||.+|+.+|+.|+.+|+.|..+
T Consensus       193 ~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--L~~--~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~  263 (587)
T 3ky9_A          193 TEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKP--LQR--FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGT  263 (587)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHT--TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999998  663  7899999999999999999999999999999876

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=99.48  E-value=2.5e-14  Score=103.99  Aligned_cols=72  Identities=18%  Similarity=0.385  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCC--ccccccccccchhHHHHHHHH-HHHHHHHhhhh
Q psy5779           5 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNIL--SKNDRKHLFGNVTAVRKCSER-LLAALEQCWQD   78 (83)
Q Consensus         5 ~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l--~~~~~~~LFsNi~~v~~~s~~-fl~~Le~r~~~   78 (83)
                      ..+|||++++||++||++|+++|++++++|+.+  |...++.  ...+.+.||+||++|+.+|.. |+.+|+.+.++
T Consensus         9 ~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~   83 (354)
T 2rgn_B            9 ALERSMYVLSELVETEKMYVDDLGQIVEGYMAT--MAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKD   83 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH--HHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999988  4432211  123578999999999999999 99999998764

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=1.6e-14  Score=106.63  Aligned_cols=75  Identities=19%  Similarity=0.314  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCc-------CCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779           4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASP-------LLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW   76 (83)
Q Consensus         4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~-------~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~   76 (83)
                      ..+.|||.+++|||+||++|+++|+++.++|+.+.       ...+.++++..+.+.||+||++|+.+|+.|+.+|+.|.
T Consensus        18 e~~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~   97 (434)
T 3mpx_A           18 GGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERL   97 (434)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999872       01123678889999999999999999999999999998


Q ss_pred             hh
Q psy5779          77 QD   78 (83)
Q Consensus        77 ~~   78 (83)
                      ++
T Consensus        98 ~~   99 (434)
T 3mpx_A           98 SN   99 (434)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=99.45  E-value=4.5e-14  Score=101.99  Aligned_cols=67  Identities=18%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779           9 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus         9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      .+++++||++||++|+++|+++.++|+.+  |.+ .++++..+.+.||+||++|+.+|+.|+.+|+.|.+
T Consensus         4 y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~   71 (354)
T 1dbh_A            4 YYDLVKAFMAEIRQYIRELNLIIKVFREP--FVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVE   71 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHh
Confidence            35799999999999999999999999998  542 25789999999999999999999999999998864

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.40  E-value=5.9e-14  Score=114.39  Aligned_cols=71  Identities=18%  Similarity=0.332  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC-CCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV-NILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         6 E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~-~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +.++|++|+||++||++|+++|+++.++|+.+  |... ++++..+.+.||+||++|+.+|+.|+.+|+.|.+.
T Consensus       198 ~~~~revI~ELi~TE~~YV~~L~~l~~~y~~p--L~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~  269 (1049)
T 3ksy_A          198 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREP--FVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEM  269 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHH--HHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999998  5432 57899999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1ki1b1	210	a.87.1.1 (B:1229-1438) GEF of intersectin {Human (	3e-12
d1txda1	234	a.87.1.1 (A:766-999) Rho guanine nucleotide exchan	9e-12
d1xcga1	228	a.87.1.1 (A:714-941) Rho guanine nucleotide exchan	1e-11
d1dbha1	207	a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H	5e-11
d1foea1	206	a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in	5e-11
d2dfka1	203	a.87.1.1 (A:37-239) Rho guanine nucleotide exchang	6e-11
d1f5xa_	208	a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta	3e-09
d1by1a_	209	a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI	5e-09
d1ntya1	184	a.87.1.1 (A:1231-1414) Triple functional domain pr	1e-06
d1kz7a1	195	a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse	2e-05

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 3e-12
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   ERK Q    ELI +E +Y   L ++ + F     L +  +L++ +   +F N   
Sbjct: 2  MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LMESELLTEKEVAMIFVNWKE 59

Query: 61 VRKCSERLLAALEQCWQDS 79
          +  C+ +LL AL    + S
Sbjct: 60 LIMCNIKLLKALRVRKKMS 78

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 9e-12
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   E K QE   EL  +E ++ ++L VL++ F     +    ILS ++ + +F N+  
Sbjct: 15 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLED 72

Query: 61 VRKCSERLLAALEQCWQDS 79
          + +    L   ++   + +
Sbjct: 73 ILQLHIGLNEQMKAVRKRN 91

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-11
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   E   QE   EL  +EAS+ ++L VL+  F     +   N++ + +   LF N+  
Sbjct: 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPE 71

Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
          + +       A+++  ++  +++
Sbjct: 72 LIEIHNSWCEAMKKLREEGPIIK 94

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 5e-11
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
          E+   +     +     Y + L ++ K F   P + +  + S ND +++F  +  + + S
Sbjct: 1  EQTYYDLVKAFMAEIRQYIRELNLIIKVFRE-PFVSNSKLFSANDVENIFSRIVDIHELS 59

Query: 66 ERLLAALEQCWQ 77
           +LL  +E   +
Sbjct: 60 VKLLGHIEDTVE 71

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (128), Expect = 5e-11
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
            KL++   EL+ +E +Y K L  L + ++    L     L++++   LFGN+T + +  
Sbjct: 5  ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQ 62

Query: 66 ERLLAALEQCWQD 78
             L  LE   + 
Sbjct: 63 VEFLKTLEDGVRL 75

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 6e-11
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
           L   ++       E++++E  Y K L  + + ++        ++ S    K +FGN+  
Sbjct: 7  PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLK-QCRKRRDMFSDEQLKVIFGNIED 65

Query: 61 VRKCSERLLAALEQCWQDS 79
          + +     +  LE+ + + 
Sbjct: 66 IYRFQMGFVRDLEKQYNND 84

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (115), Expect = 3e-09
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
            K      E+  +E  Y  +L  +++HF+  PL      L   D + +F N+  +    
Sbjct: 25 YDKRCCCLREIQQTEEKYTDTLGSIQQHFMK-PLQ---RFLKPQDMETIFVNIEELFSVH 80

Query: 66 ERLLAALEQCWQDSI 80
             L  L+       
Sbjct: 81 THFLKELKDALAGPG 95

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 5e-09
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 1  TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
          T    +         ++ +E  Y K L  +   ++    L     LS  +  +L GN+  
Sbjct: 6  TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEE 63

Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
          +    + L+ +LE+C +     Q
Sbjct: 64 ICSFQQMLVQSLEECTKLPEAQQ 86

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-06
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 7  RKLQEAKFELITSEASYFKSLTVLEKHFIA--SPLLDDVNILSKNDRKHLFGNVTAVRKC 64
          R+ +    ELI +E +Y + L      ++   +  ++++     N    +FGN+  + + 
Sbjct: 2  RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEF 61

Query: 65 SERL-LAALEQCWQDSILL 82
             + L  LE+  Q    +
Sbjct: 62 HNNIFLKELEKYEQLPEDV 80

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 6  ERKLQEAKFELITSEASYFKSLTVLEKHFIA----SPLLDDVNILSKNDRKHLFGNVTAV 61
              +    EL+ +E +Y + L  + + + A      +   ++   +N +  LFGN+  +
Sbjct: 7  AILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEI 66

Query: 62 RKCSERL-LAALEQCWQDSILL 82
               R+ L  LE C     L+
Sbjct: 67 YHFHNRIFLRELESCIDCPELV 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1ki1b1	210	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	99.76
d1xcga1	228	Rho guanine nucleotide exchange factor 11, PDZ-Rho	99.75
d1txda1	234	Rho guanine nucleotide exchange factor 12 {Human (	99.75
d1foea1	206	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	99.64
d2dfka1	203	Rho guanine nucleotide exchange factor 9, Collybis	99.63
d1dbha1	207	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.61
d1f5xa_	208	RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d1by1a_	209	beta-pix {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1kz7a1	195	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	99.41
d1ntya1	184	Triple functional domain protein TRIO {Human (Homo	99.41

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-19  Score=119.80  Aligned_cols=76  Identities=28%  Similarity=0.372  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +|||+|+|||++|+|++.||..|+++|+++.+.|+.+  +..+++++..+.+.||+|+++++.+|.+|+.+|+.+...
T Consensus         2 ~l~~~e~kR~~vi~Elv~tE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~lF~~i~~l~~~h~~~l~~L~~~~~~   77 (210)
T d1ki1b1           2 MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKM   77 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            6999999999999999999999999999999999988  665678999999999999999999999999999987553

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.3e-19  Score=118.40  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=73.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI   80 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~   80 (83)
                      +|+++|+|||++|+||++||.+|+++|+++.+.|+.+  +...++++..+.+.||+|+.+++.+|+.|+.+|+.+.++..
T Consensus        14 ~~~~~e~kRq~vi~ELi~tE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~lF~~i~~l~~~h~~fl~~L~~~~~~~~   91 (228)
T d1xcga1          14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP   91 (228)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999999999999999988  66567899999999999999999999999999999988766


Q ss_pred             cC
Q psy5779          81 LL   82 (83)
Q Consensus        81 ~i   82 (83)
                      .+
T Consensus        92 ~~   93 (228)
T d1xcga1          92 II   93 (228)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=99.75  E-value=5.6e-19  Score=119.57  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      +|+++|+|||++|+||++||++|+++|+++.++|+.+  +...++++..+.+.||+|+++++.+|+.|+.+|+.....
T Consensus        15 ~~~~~e~kR~~vi~ELi~tE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~   90 (234)
T d1txda1          15 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKR   90 (234)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTCSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999998  665678999999999999999999999999999875443

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.4e-16  Score=105.52  Aligned_cols=75  Identities=27%  Similarity=0.462  Sum_probs=68.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD   78 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~   78 (83)
                      .||..+ |||.+|+||+.||..|+++|+++.++|+.+  +...++++..+.+.||+|+++++.+|+.|+.+|+.+.+.
T Consensus         1 ~~s~~~-kr~~ii~Eli~tE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~lF~ni~~l~~~h~~fl~~L~~~~~~   75 (206)
T d1foea1           1 QLSDAD-KLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRL   75 (206)
T ss_dssp             CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHTSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhc
Confidence            377877 699999999999999999999999999998  666688999999999999999999999999999988654

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.3e-16  Score=105.97  Aligned_cols=77  Identities=17%  Similarity=0.354  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      +++.++++||.+|+|++.||.+|+++|+++.++|+.+  +. ..++++..+.+.||+|+++++.+|+.|+.+|+.+..+.
T Consensus         7 ~~~~~~~~R~~ii~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~   84 (203)
T d2dfka1           7 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQ--CRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNND   84 (203)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccC
Confidence            3678999999999999999999999999999999987  43 34678999999999999999999999999999986653

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.8e-17  Score=106.49  Aligned_cols=70  Identities=19%  Similarity=0.365  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779           6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ   77 (83)
Q Consensus         6 E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~   77 (83)
                      |++||++|.|+|+||++|+++|+++.++|+.|  |. .+++++..+.+.||+||++|+.+|++|+.+|+.+.+
T Consensus         1 e~~~~~vi~Eli~tE~~Yv~~L~~l~~~y~~p--l~~~~~~~~~~~v~~iF~ni~~I~~~h~~fl~~Le~~~~   71 (207)
T d1dbha1           1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREP--FVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVE   71 (207)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999998  53 346789999999999999999999999999987654

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.9e-16  Score=106.19  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           5 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         5 ~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      ++.|||.+|+|+++||++|+++|+++.++|+.+  |+  +++++.+.+.||+||.+|+.+|+.|+.+|+.+.+++
T Consensus        24 ~~~kR~~ii~Eli~tE~~Yv~~L~~l~~~y~~p--L~--~~l~~~~~~~iF~ni~~i~~~h~~~l~~L~~~~~~~   94 (208)
T d1f5xa_          24 EYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKP--LQ--RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP   94 (208)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHTTTTTTTHHH--HT--TTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--hhCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCc
Confidence            466899999999999999999999999999998  66  478999999999999999999999999999887654

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=102.24  Aligned_cols=76  Identities=18%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779           2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS   79 (83)
Q Consensus         2 ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~   79 (83)
                      .+...++++.++.|++.||++|+++|+++.+.|+.|  |...+.++..+.+.||+|+++|+.+|+.|+.+|+.+....
T Consensus         7 ~~~~~~~r~~Ii~ELi~TE~~Yv~~L~~l~~~y~~p--l~~~~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~   82 (209)
T d1by1a_           7 TAINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLP   82 (209)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhCC
Confidence            344457899999999999999999999999999998  6666789999999999999999999999999999987654

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.4e-13  Score=90.95  Aligned_cols=73  Identities=23%  Similarity=0.368  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC---C---CCccccccccccchhHHHHHHHH-HHHHHHHhh
Q psy5779           4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV---N---ILSKNDRKHLFGNVTAVRKCSER-LLAALEQCW   76 (83)
Q Consensus         4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~---~---~l~~~~~~~LFsNi~~v~~~s~~-fl~~Le~r~   76 (83)
                      ....+||++|+|+++||++|+++|+++.++|+.+  +++.   +   .....+.+.+|+|+.++..+|.+ |+.+++.+.
T Consensus         5 ~~~~~R~~ii~Eli~TE~~Yv~~L~~l~~~y~~~--l~~~~~~~~~~~~~~~~~~~iF~ni~~i~~~h~~~ll~~l~~~~   82 (195)
T d1kz7a1           5 SLAILRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCI   82 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG--GGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            4678999999999999999999999999999998  4321   1   12345788999999999999987 678888776


Q ss_pred             hh
Q psy5779          77 QD   78 (83)
Q Consensus        77 ~~   78 (83)
                      ..
T Consensus        83 ~~   84 (195)
T d1kz7a1          83 DC   84 (195)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=89.13  Aligned_cols=70  Identities=20%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCc--CCCCCCCCccccccccccchhHHHHHHHH-HHHHHHHhh
Q psy5779           7 RKLQEAKFELITSEASYFKSLTVLEKHFIASP--LLDDVNILSKNDRKHLFGNVTAVRKCSER-LLAALEQCW   76 (83)
Q Consensus         7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~--~l~~~~~l~~~~~~~LFsNi~~v~~~s~~-fl~~Le~r~   76 (83)
                      ||||.+|+|++.||++|+++|+++.+.|+.+.  .....+.....+...+|+|+++++.+|++ |+.+|+.+.
T Consensus         2 ~KR~~ii~El~~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~~~~~~~~~iF~ni~~i~~~h~~~ll~~l~~~~   74 (184)
T d1ntya1           2 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYE   74 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999998762  11111223334567799999999999988 577777653