Psyllid ID: psy57

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE
Secondary Structure (PSIPRED)
ccccccEEEEEccccccccccccccHHHHHHHHcccEEEEEcccccccccccccccccccccccEEEEEEEEEEEEEcEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccccccccccccHHHHHHHHHccEEEEEEcHcccHHHHHcHcccccccEEEEEEEEEccEEccEEcccccccccccccccccccEEEEEcccccccccHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEKEENKITIslldhrpsmknffnstrlQEWTRATNVRLRLLRTKNLLGHlmsmadqdptttrryfysikdisiggrcrcnghadvcdildpedpyhricrcqhntcghncevccpgyeqkawrqsqsnkpfsce
Flexible Loop (DISEMBL)
mekeenkitislldhrpsmknffnstrlqewtraTNVRLRLLRTKNLlghlmsmadqdptttRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKawrqsqsnkpfsce
Low Complexity Region (SEG)
MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE
Disordered region (IsUnstruct)
*******************KNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW************
Disordered Region (DISOPRED)
*EKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGH*************HRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS***FSC*
Disordered Region (DISEMBL)
********TISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQ***************
Disordered Region (DISPRO)
****ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q00174	3712	Laminin subunit alpha OS=	yes	N/A	0.977	0.035	0.699	6e-52
O15230	3695	Laminin subunit alpha-5 O	yes	N/A	0.925	0.033	0.575	2e-41
Q21313	3672	Laminin-like protein epi-	yes	N/A	0.977	0.035	0.578	2e-41
Q61001	3718	Laminin subunit alpha-5 O	yes	N/A	0.911	0.033	0.560	3e-41
Q16787	3333	Laminin subunit alpha-3 O	no	N/A	0.962	0.039	0.553	2e-38
Q61789	3333	Laminin subunit alpha-3 O	no	N/A	0.962	0.039	0.530	9e-37
P24043	3122	Laminin subunit alpha-2 O	no	N/A	0.948	0.040	0.459	5e-25
P19137	3084	Laminin subunit alpha-1 O	no	N/A	0.948	0.041	0.445	5e-25
Q60675	3106	Laminin subunit alpha-2 O	no	N/A	0.948	0.041	0.459	5e-25
P25391	3075	Laminin subunit alpha-1 O	no	N/A	0.933	0.040	0.438	1e-24

>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2

 Score =  202 bits (514), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 108/133 (81%), Gaps = 1/133 (0%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I + LL+ RPS  N+FNST LQEWTRATNVR+RLLRTKNLLGHLMS+A QDPT TR
Sbjct: 199 ENGEIPVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPTVTR 258

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI-CRCQHNTCGHNCEVCCPGYEQKA 122
           RYFYSIKDISIGGRC CNGHAD CD+ DP+ P   + CRCQH+TCG  C  CCPG+EQK 
Sbjct: 259 RYFYSIKDISIGGRCMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKK 318

Query: 123 WRQSQSNKPFSCE 135
           WRQ+ + +PF+CE
Sbjct: 319 WRQNTNARPFNCE 331

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Drosophila melanogaster (taxid: 7227)

>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8

 Score =  167 bits (423), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 94/132 (71%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SL++ RP   NF  S  L+E+T+ATNVRLR LRT  LLGHLM  A +DPT TR
Sbjct: 226 ENGEIVVSLVNGRPGAMNFSYSPLLREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTR 285

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDISIGGRC C+GHAD CD  DP DP+   C CQHNTCG  C+ CCPG+ Q+ W
Sbjct: 286 RYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPW 345

Query: 124 RQSQSNKPFSCE 135
           + + +N    C+
Sbjct: 346 KPATANSANECQ 357

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMAD-QDPTTT 62
           E  ++ I +L+HRPS + F  S  LQ +TRATNVRLRLL T+ L GHLM M + +DPT T
Sbjct: 223 ENAEMVIRILEHRPSSRQFATSEALQNFTRATNVRLRLLGTRTLQGHLMDMNEWRDPTVT 282

Query: 63  RRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 122
           RRYFY+IK+I IGGRC CNGHA  CDIL+P+ P   +CRC+HNTCG  CE CCPG+ QK 
Sbjct: 283 RRYFYAIKEIMIGGRCVCNGHAVTCDILEPQRPKSLLCRCEHNTCGDMCERCCPGFVQKQ 342

Query: 123 WRQSQSNKPFSCE 135
           W+ + ++  F+CE
Sbjct: 343 WQAATAHNNFTCE 355

Caenorhabditis elegans (taxid: 6239)

>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 96/132 (72%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SL++ RP   NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct: 231 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 290

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct: 291 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 350

Query: 124 RQSQSNKPFSCE 135
           + + ++    C+
Sbjct: 351 KPATTDSANECQ 362

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Alpha-5 may be the major laminin alpha chain of adult epithelial and/or endothelial basal laminae.

Mus musculus (taxid: 10090)

>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 2/132 (1%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  ++ +SL++ RP  KNF  S  L+E+T+ATN+RLR LRT  LLGHL+S A +DPT TR
Sbjct: 225 ENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTR 284

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDISIGG+C CNGHA+VC+I +PE  +   C CQH+TCG  C+ CC GY Q+ W
Sbjct: 285 RYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFR--CECQHHTCGETCDRCCTGYNQRRW 342

Query: 124 RQSQSNKPFSCE 135
           R +   +   CE
Sbjct: 343 RPAAWEQSHECE 354

Laminin-5 is thought to be involved in (1) cell adhesion via integrin alpha-3/beta-1 in focal adhesion and integrin alpha-6/beta-4 in hemidesmosomes, (2) signal transduction via tyrosine phosphorylation of pp125-FAK and p80, (3) differentiation of keratinocytes.

Homo sapiens (taxid: 9606)

>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3

 Score =  151 bits (382), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SL++ RP  K F  S  L+E+T+ATN+RLR LRT  LLGHL+S A++DPT TR
Sbjct: 222 ENGEIVVSLINGRPGAKKFAFSDTLREFTKATNIRLRFLRTNTLLGHLISKAERDPTVTR 281

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDIS+GGRC CNGHA+ C   +PE  +   C CQH+TCG  C  CC GY Q+ W
Sbjct: 282 RYYYSIKDISVGGRCVCNGHAEACSADNPEKQFR--CECQHHTCGDTCNRCCAGYNQRRW 339

Query: 124 RQSQSNKPFSCE 135
           + +   +   CE
Sbjct: 340 QPAGQEQHNECE 351

Laminin-5 is thought to be involved in (1) cell adhesion via integrin alpha-3/beta-1 in focal adhesion and integrin alpha-6/beta-4 in hemidesmosomes, (2) signal transduction via tyrosine phosphorylation of pp125-FAK and p80, (3) differentiation of keratinocytes.

Mus musculus (taxid: 10090)

>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP---- 59
           E  +I ISL++ RPS  +   S  L E+T A  +RLR  R + L   LM  A +DP    
Sbjct: 210 ENGEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREID 267

Query: 60  -TTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
              TRRY+YS+KDIS+GG C C GHA  C  LDP     R C C+HNTCG +C+ CCPG+
Sbjct: 268 PIVTRRYYYSVKDISVGGMCICYGHARACP-LDPATNKSR-CECEHNTCGDSCDQCCPGF 325

Query: 119 EQKAWRQSQSNKPFSCE 135
            QK WR         CE
Sbjct: 326 HQKPWRAGTFLTKTECE 342

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 81/137 (59%), Gaps = 9/137 (6%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMA-----DQD 58
           E  +I  SL++ RPS  +   S +L E+T A  +RLRL R + L   LM+++     D D
Sbjct: 200 EHGEIHTSLINGRPSADD--PSPQLLEFTSARYIRLRLQRIRTLNADLMTLSHRDLRDLD 257

Query: 59  PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
           P  TRRY+YSIKDIS+GG C C GHA  C     E+     C+C+HNTCG +C+ CCPGY
Sbjct: 258 PIVTRRYYYSIKDISVGGMCICYGHASSCPW--DEEAKQLQCQCEHNTCGESCDRCCPGY 315

Query: 119 EQKAWRQSQSNKPFSCE 135
            Q+ WR    +    CE
Sbjct: 316 HQQPWRPGTISSGNECE 332

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDP---- 59
           E  +I ISL++ RPS  +   S  L E+T A  +RLR  R + L   LM  A +DP    
Sbjct: 206 ENGEIHISLINGRPSADD--PSPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREID 263

Query: 60  -TTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
              TRRY+YS+KDIS+GG C C GHA  C  LDP     R C C+HNTCG +C+ CCPG+
Sbjct: 264 PIVTRRYYYSVKDISVGGMCICYGHARACP-LDPATNKSR-CECEHNTCGESCDRCCPGF 321

Query: 119 EQKAWRQSQSNKPFSCE 135
            QK WR         CE
Sbjct: 322 HQKPWRAGTFLTKSECE 338

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 82/139 (58%), Gaps = 13/139 (9%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMA-----DQD 58
           E  +I  SL++ RPS  +   S +L E+T A  +RLRL R + L   LM+++     + D
Sbjct: 193 EHGEIHTSLINGRPSADDL--SPKLLEFTSARYIRLRLQRIRTLNADLMTLSHREPKELD 250

Query: 59  PTTTRRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI--CRCQHNTCGHNCEVCCP 116
           P  TRRY+YSIKDIS+GG C C GHA  C    P D   +   C+C+HNTCG +C  CCP
Sbjct: 251 PIVTRRYYYSIKDISVGGMCICYGHASSC----PWDETTKKLQCQCEHNTCGESCNRCCP 306

Query: 117 GYEQKAWRQSQSNKPFSCE 135
           GY Q+ WR    +   +CE
Sbjct: 307 GYHQQPWRPGTVSSGNTCE 325

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
328722049	3586	PREDICTED: laminin subunit alpha-like [A	0.903	0.034	0.757	3e-55
189235268	4228	PREDICTED: similar to laminin A chain, p	0.977	0.031	0.742	4e-54
270004880	2328	laminin A [Tribolium castaneum]	0.977	0.056	0.742	2e-53
242022324	3650	laminin A chain, putative [Pediculus hum	0.888	0.032	0.712	6e-52
340715997	3666	PREDICTED: laminin subunit alpha-like [B	0.903	0.033	0.712	2e-51
350408641	3666	PREDICTED: laminin subunit alpha-like [B	0.903	0.033	0.712	2e-51
380019683	3670	PREDICTED: laminin subunit alpha-like [A	0.903	0.033	0.704	7e-51
328793738	3544	PREDICTED: laminin subunit alpha, partia	0.903	0.034	0.704	1e-50
383866057	3680	PREDICTED: laminin subunit alpha-like [M	0.903	0.033	0.704	1e-50
307167492	3660	Laminin subunit alpha [Camponotus florid	0.903	0.033	0.704	1e-50

>gi|328722049|ref|XP_001949708.2| PREDICTED: laminin subunit alpha-like [Acyrthosiphon pisum]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 110/132 (83%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I + LL +RPS  NFFNS  LQE+TRATNVR RLLR KNLLGHLMS+A QDPTTTR
Sbjct: 130 ENGEIFVKLLSNRPSANNFFNSYALQEFTRATNVRFRLLRVKNLLGHLMSVARQDPTTTR 189

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKD+SIGGRCRCNGHAD+CDI DP D Y  ICRCQHNTCGHNCE CCPG+EQKAW
Sbjct: 190 RYFYSIKDVSIGGRCRCNGHADLCDITDPTDSYKLICRCQHNTCGHNCERCCPGFEQKAW 249

Query: 124 RQSQSNKPFSCE 135
            QS+ +K F CE
Sbjct: 250 SQSKYDKLFECE 261

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235268|ref|XP_972827.2| PREDICTED: similar to laminin A chain, putative [Tribolium castaneum]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/132 (74%), Positives = 110/132 (83%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I ISLL++RPS KN+FNST LQEWTRATNVRL+LLRTKN LGHLMS+A QDPT TR
Sbjct: 200 EGGEIAISLLNNRPSAKNYFNSTILQEWTRATNVRLKLLRTKNFLGHLMSVARQDPTVTR 259

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDI D +DP   +CRCQHNTCG  C+ CCPG+EQK W
Sbjct: 260 RYFYSIKDISIGGRCMCNGHADTCDIQDSQDPSVLLCRCQHNTCGAKCDTCCPGFEQKKW 319

Query: 124 RQSQSNKPFSCE 135
           +QS+ N PF CE
Sbjct: 320 QQSKINHPFVCE 331

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004880|gb|EFA01328.1| laminin A [Tribolium castaneum]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/132 (74%), Positives = 110/132 (83%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I ISLL++RPS KN+FNST LQEWTRATNVRL+LLRTKN LGHLMS+A QDPT TR
Sbjct: 200 EGGEIAISLLNNRPSAKNYFNSTILQEWTRATNVRLKLLRTKNFLGHLMSVARQDPTVTR 259

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDI D +DP   +CRCQHNTCG  C+ CCPG+EQK W
Sbjct: 260 RYFYSIKDISIGGRCMCNGHADTCDIQDSQDPSVLLCRCQHNTCGAKCDTCCPGFEQKKW 319

Query: 124 RQSQSNKPFSCE 135
           +QS+ N PF CE
Sbjct: 320 QQSKINHPFVCE 331

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022324|ref|XP_002431590.1| laminin A chain, putative [Pediculus humanus corporis] gi|212516898|gb|EEB18852.1| laminin A chain, putative [Pediculus humanus corporis]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SLL++RPS K+FFNST LQEWT+ATNVRLR LRTK LLGHLMS+A QDPT TR
Sbjct: 201 EGGEIVVSLLNNRPSAKDFFNSTVLQEWTKATNVRLRFLRTKTLLGHLMSVARQDPTVTR 260

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHA  CD  DP D Y  +C CQHNTCG  C+ CCPGY+QKAW
Sbjct: 261 RYFYSIKDISIGGRCMCNGHAVTCDNTDPRDTYKLVCSCQHNTCGDQCQTCCPGYQQKAW 320

Query: 124 RQSQSNKPFSCE 135
           +QS++N  F CE
Sbjct: 321 KQSKANALFVCE 332

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715997|ref|XP_003396491.1| PREDICTED: laminin subunit alpha-like [Bombus terrestris]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS K++FNST LQEWTRATNVR R LRTKNLLGHLMS+  +DPT TR
Sbjct: 197 EGGEIPISILNNRPSAKHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSLVREDPTVTR 256

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDILDP+ P   +CRCQHNTCG  C  CC G+EQK W
Sbjct: 257 RYFYSIKDISIGGRCMCNGHADTCDILDPKMPKKLVCRCQHNTCGAQCATCCKGFEQKKW 316

Query: 124 RQSQSNKPFSCE 135
           RQS + K F+CE
Sbjct: 317 RQSTAFKKFTCE 328

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408641|ref|XP_003488468.1| PREDICTED: laminin subunit alpha-like [Bombus impatiens]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 107/132 (81%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS K++FNST LQEWTRATNVR R LRTKNLLGHLMS+  +DPT TR
Sbjct: 197 EGGEIPISILNNRPSAKHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSLVREDPTVTR 256

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDILDP+ P   +CRCQHNTCG  C  CC G+EQK W
Sbjct: 257 RYFYSIKDISIGGRCMCNGHADTCDILDPKMPKKLVCRCQHNTCGAQCATCCKGFEQKKW 316

Query: 124 RQSQSNKPFSCE 135
           RQS + K F+CE
Sbjct: 317 RQSTAFKKFTCE 328

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019683|ref|XP_003693732.1| PREDICTED: laminin subunit alpha-like [Apis florea]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS +++FNST LQEWTRATNVR R LRTKNLLGHLMS+  +DPT TR
Sbjct: 197 EGGEIPISILNNRPSAQHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSLVREDPTVTR 256

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDILDP+ P    CRCQHNTCG  C  CC G+EQK W
Sbjct: 257 RYFYSIKDISIGGRCMCNGHADTCDILDPKTPKKLFCRCQHNTCGPQCATCCKGFEQKKW 316

Query: 124 RQSQSNKPFSCE 135
           RQS + K F+CE
Sbjct: 317 RQSTAFKKFTCE 328

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793738|ref|XP_396118.4| PREDICTED: laminin subunit alpha, partial [Apis mellifera]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS +++FNST LQEWTRATNVR R LRTKNLLGHLMS+  +DPT TR
Sbjct: 76  EGGEIPISILNNRPSAQHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSLVREDPTVTR 135

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDILDP+ P    CRCQHNTCG  C  CC G+EQK W
Sbjct: 136 RYFYSIKDISIGGRCMCNGHADTCDILDPKMPKKLFCRCQHNTCGPQCATCCKGFEQKKW 195

Query: 124 RQSQSNKPFSCE 135
           RQS + K F+CE
Sbjct: 196 RQSTAFKKFTCE 207

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866057|ref|XP_003708488.1| PREDICTED: laminin subunit alpha-like [Megachile rotundata]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS K++FNST LQEWTRATNVR R LRTKNLLGHLMS+  +DPT TR
Sbjct: 216 EGGEIPISILNNRPSAKHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSLVREDPTVTR 275

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDILDP+ P   +CRCQHNTCG  C  CC G+EQK W
Sbjct: 276 RYFYSIKDISIGGRCMCNGHADTCDILDPKMPKKLVCRCQHNTCGPQCATCCKGFEQKKW 335

Query: 124 RQSQSNKPFSCE 135
           R S + K F+CE
Sbjct: 336 RISTAFKKFTCE 347

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167492|gb|EFN61065.1| Laminin subunit alpha [Camponotus floridanus]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 106/132 (80%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I IS+L++RPS K++FNST LQEWTRATNVR R LRTKNLLGHLMS+  QDPT TR
Sbjct: 196 EGGEIPISILNNRPSAKHYFNSTLLQEWTRATNVRFRFLRTKNLLGHLMSVVRQDPTVTR 255

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RYFYSIKDISIGGRC CNGHAD CDI DP  P   +CRCQHNTCG  C  CC G+EQK W
Sbjct: 256 RYFYSIKDISIGGRCMCNGHADTCDIQDPNMPKKLVCRCQHNTCGPQCATCCKGFEQKKW 315

Query: 124 RQSQSNKPFSCE 135
           +QS ++K F+CE
Sbjct: 316 QQSTASKKFTCE 327

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0002526	3712	LanA "Laminin A" [Drosophila m	0.977	0.035	0.699	2.8e-49
UNIPROTKB|O15230	3695	LAMA5 "Laminin subunit alpha-5	0.977	0.035	0.575	4.3e-39
WB|WBGene00001328	3704	epi-1 [Caenorhabditis elegans	0.977	0.035	0.578	4.3e-39
UNIPROTKB|F1MC13	3656	LAMA5 "Uncharacterized protein	0.977	0.036	0.568	5.4e-39
UNIPROTKB|F1MAN8	3719	Lama5 "Protein Lama5" [Rattus	0.977	0.035	0.560	5.5e-39
MGI|MGI:105382	3718	Lama5 "laminin, alpha 5" [Mus	0.977	0.035	0.560	2.4e-38
UNIPROTKB|F1NZZ2	3668	LAMA5 "Uncharacterized protein	0.977	0.035	0.560	4.9e-38
UNIPROTKB|F1NQ51	3356	LAMA3 "Uncharacterized protein	0.977	0.039	0.560	1.5e-37
UNIPROTKB|F1MDD5	3242	Bt.12589 "Uncharacterized prot	0.962	0.040	0.560	2.4e-37
ZFIN|ZDB-GENE-030131-9823	3664	lama5 "laminin, alpha 5" [Dani	0.977	0.036	0.553	3.5e-37

FB|FBgn0002526 LanA "Laminin A" [Drosophila melanogaster (taxid:7227)]

 Score = 532 (192.3 bits), Expect = 2.8e-49, P = 2.8e-49
 Identities = 93/133 (69%), Positives = 108/133 (81%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I + LL+ RPS  N+FNST LQEWTRATNVR+RLLRTKNLLGHLMS+A QDPT TR
Sbjct:   199 ENGEIPVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPTVTR 258

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRI-CRCQHNTCGHNCEVCCPGYEQKA 122
             RYFYSIKDISIGGRC CNGHAD CD+ DP+ P   + CRCQH+TCG  C  CCPG+EQK 
Sbjct:   259 RYFYSIKDISIGGRCMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKK 318

Query:   123 WRQSQSNKPFSCE 135
             WRQ+ + +PF+CE
Sbjct:   319 WRQNTNARPFNCE 331

GO:0005604 "basement membrane" evidence=ISS;NAS;IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005605 "basal lamina" evidence=IDA

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0009887 "organ morphogenesis" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

GO:0048598 "embryonic morphogenesis" evidence=NAS

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007498 "mesoderm development" evidence=IEP

GO:0007411 "axon guidance" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0036062 "presynaptic periactive zone" evidence=IDA

GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP

UNIPROTKB|O15230 LAMA5 "Laminin subunit alpha-5" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.3e-39, P = 4.3e-39
 Identities = 76/132 (57%), Positives = 94/132 (71%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP   NF  S  L+E+T+ATNVRLR LRT  LLGHLM  A +DPT TR
Sbjct:   226 ENGEIVVSLVNGRPGAMNFSYSPLLREFTKATNVRLRFLRTNTLLGHLMGKALRDPTVTR 285

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHAD CD  DP DP+   C CQHNTCG  C+ CCPG+ Q+ W
Sbjct:   286 RYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRCCPGFNQQPW 345

Query:   124 RQSQSNKPFSCE 135
             + + +N    C+
Sbjct:   346 KPATANSANECQ 357

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IC

GO:0016477 "cell migration" evidence=IDA

GO:0030154 "cell differentiation" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005605 "basal lamina" evidence=NAS

GO:0048041 "focal adhesion assembly" evidence=NAS

GO:0009790 "embryo development" evidence=NAS

GO:0045446 "endothelial cell differentiation" evidence=NAS

GO:0008037 "cell recognition" evidence=NAS

GO:0001525 "angiogenesis" evidence=NAS

GO:0005178 "integrin binding" evidence=IDA

GO:0007229 "integrin-mediated signaling pathway" evidence=IMP

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0043259 "laminin-10 complex" evidence=IDA;TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0005604 "basement membrane" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0031012 "extracellular matrix" evidence=IDA

GO:0043260 "laminin-11 complex" evidence=TAS

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IDA

WB|WBGene00001328 epi-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 436 (158.5 bits), Expect = 4.3e-39, P = 4.3e-39
 Identities = 77/133 (57%), Positives = 98/133 (73%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMAD-QDPTTT 62
             E  ++ I +L+HRPS + F  S  LQ +TRATNVRLRLL T+ L GHLM M + +DPT T
Sbjct:   223 ENAEMVIRILEHRPSSRQFATSEALQNFTRATNVRLRLLGTRTLQGHLMDMNEWRDPTVT 282

Query:    63 RRYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA 122
             RRYFY+IK+I IGGRC CNGHA  CDIL+P+ P   +CRC+HNTCG  CE CCPG+ QK 
Sbjct:   283 RRYFYAIKEIMIGGRCVCNGHAVTCDILEPQRPKSLLCRCEHNTCGDMCERCCPGFVQKQ 342

Query:   123 WRQSQSNKPFSCE 135
             W+ + ++  F+CE
Sbjct:   343 WQAATAHNNFTCE 355

GO:0005604 "basement membrane" evidence=IEA;IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0010950 "positive regulation of endopeptidase activity" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

UNIPROTKB|F1MC13 LAMA5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 435 (158.2 bits), Expect = 5.4e-39, P = 5.4e-39
 Identities = 75/132 (56%), Positives = 96/132 (72%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP   NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct:   208 ENGEIVVSLVNGRPGAMNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 267

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct:   268 RYYYSIKDISIGGRCVCHGHADVCDAKDPTDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 327

Query:   124 RQSQSNKPFSCE 135
             R + ++    C+
Sbjct:   328 RPATTDSANECQ 339

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

UNIPROTKB|F1MAN8 Lama5 "Protein Lama5" [Rattus norvegicus (taxid:10116)]

 Score = 435 (158.2 bits), Expect = 5.5e-39, P = 5.5e-39
 Identities = 74/132 (56%), Positives = 97/132 (73%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP  +NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct:   230 ENGEIVVSLVNGRPGARNFSYSPVLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 289

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct:   290 RYYYSIKDISIGGRCVCHGHADVCDAKDPSDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 349

Query:   124 RQSQSNKPFSCE 135
             + + ++    C+
Sbjct:   350 KPATTDSANECQ 361

GO:0005102 "receptor binding" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

MGI|MGI:105382 Lama5 "laminin, alpha 5" [Mus musculus (taxid:10090)]

 Score = 429 (156.1 bits), Expect = 2.4e-38, P = 2.4e-38
 Identities = 74/132 (56%), Positives = 96/132 (72%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP   NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct:   231 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 290

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct:   291 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 350

Query:   124 RQSQSNKPFSCE 135
             + + ++    C+
Sbjct:   351 KPATTDSANECQ 362

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0001942 "hair follicle development" evidence=IMP

GO:0005102 "receptor binding" evidence=IEA

GO:0005178 "integrin binding" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0005610 "laminin-5 complex" evidence=ISO

GO:0005615 "extracellular space" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO

GO:0007517 "muscle organ development" evidence=IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0016477 "cell migration" evidence=ISO

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IMP

GO:0043259 "laminin-10 complex" evidence=ISO;IPI

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IMP

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

UNIPROTKB|F1NZZ2 LAMA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 426 (155.0 bits), Expect = 4.9e-38, P = 4.9e-38
 Identities = 74/132 (56%), Positives = 94/132 (71%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP   NF  S  L+ +T+ATN+RLR L+T  LLGHLM  A +DPT TR
Sbjct:   208 ENGEIVVSLVNGRPGAMNFSYSPLLRNFTKATNIRLRFLQTNTLLGHLMGKALRDPTVTR 267

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHADVCD  DP DPY   C CQHNTCG +C+ CCPG+ Q  W
Sbjct:   268 RYYYSIKDISIGGRCVCHGHADVCDAKDPSDPYRLQCDCQHNTCGGSCDRCCPGFNQFPW 327

Query:   124 RQSQSNKPFSCE 135
             + + ++    C+
Sbjct:   328 KPATADSANECQ 339

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

UNIPROTKB|F1NQ51 LAMA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 421 (153.3 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/132 (56%), Positives = 93/132 (70%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP  KNF  S  L+E+T+ATN+RL  LRT  LLGHL+S A +DPT TR
Sbjct:   222 ENGEIVVSLVNGRPGAKNFTYSPSLREFTKATNIRLHFLRTNTLLGHLISKAQRDPTVTR 281

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC C+GHA+VC+    E+ Y   C CQHNTCG  C+ CCPGY QK W
Sbjct:   282 RYYYSIKDISIGGRCVCHGHAEVCNAKSAENQYQFHCECQHNTCGETCDRCCPGYNQKQW 341

Query:   124 RQSQSNKPFSCE 135
             + + +     CE
Sbjct:   342 QPATAGNINICE 353

GO:0005102 "receptor binding" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005610 "laminin-5 complex" evidence=IEA

UNIPROTKB|F1MDD5 Bt.12589 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 74/132 (56%), Positives = 94/132 (71%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  ++ +SL++ RP  KNF  S  L+E+T+ATN+RLR LRT  LLGHL+S A +DPT TR
Sbjct:   128 ENGEVVVSLINGRPGAKNFTFSHALREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTR 187

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             RY+YSIKDISIGGRC CNGHA+VC+  +PE  +   C CQHNTCG  C+ CC GY Q+ W
Sbjct:   188 RYYYSIKDISIGGRCVCNGHAEVCNANNPEKLFR--CECQHNTCGDTCDRCCMGYNQRRW 245

Query:   124 RQSQSNKPFSCE 135
             R +   +   CE
Sbjct:   246 RPATGKQSNECE 257

GO:0005610 "laminin-5 complex" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

ZFIN|ZDB-GENE-030131-9823 lama5 "laminin, alpha 5" [Danio rerio (taxid:7955)]

 Score = 418 (152.2 bits), Expect = 3.5e-37, P = 3.5e-37
 Identities = 73/132 (55%), Positives = 92/132 (69%)

Query:     4 EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
             E  +I +SL++ RP   NF  S  L+E+T+ATN+RLR LRT  LLGHLM    +DPT TR
Sbjct:   218 ENGEIVVSLVNGRPGAMNFSYSPVLREFTKATNIRLRFLRTNTLLGHLMGKTLRDPTVTR 277

Query:    64 RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
             +Y+YSIKDISIGGRC CNGHA+ C+  DP DPY   C CQHNTCG +C+ CCPG+ Q  W
Sbjct:   278 KYYYSIKDISIGGRCVCNGHAEACNAQDPNDPYKLQCDCQHNTCGTSCDGCCPGFNQFPW 337

Query:   124 RQSQSNKPFSCE 135
             + + +     CE
Sbjct:   338 KPATTYSANECE 349

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0035141 "medial fin morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035138 "pectoral fin morphogenesis" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q00174	LAMA_DROME	No assigned EC number	0.6992	0.9777	0.0355	yes	N/A
Q21313	EPI1_CAEEL	No assigned EC number	0.5789	0.9777	0.0359	yes	N/A
O15230	LAMA5_HUMAN	No assigned EC number	0.5757	0.9259	0.0338	yes	N/A
Q61001	LAMA5_MOUSE	No assigned EC number	0.5606	0.9111	0.0330	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
smart00136	238	smart00136, LamNT, Laminin N-terminal domain (doma	3e-25
pfam00055	237	pfam00055, Laminin_N, Laminin N-terminal (Domain V	1e-16
cd00055	50	cd00055, EGF_Lam, Laminin-type epidermal growth fa	3e-06
pfam00053	49	pfam00053, Laminin_EGF, Laminin EGF-like (Domains	0.001

>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI)

 Score = 95.5 bits (238), Expect = 3e-25
 Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I  SLL+ RPS  +F NS  LQEW  ATN+R+RL R + L   LM      P  TR
Sbjct: 169 EGGEIAFSLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDDR---PEVTR 225

Query: 64  RYFYSIKDISIGG 76
           RY+Y+I DI++GG
Sbjct: 226 RYYYAISDIAVGG 238

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins. Length = 238

>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI)

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
            E ++  S L+ RPS  NF  S RLQEW +ATN+R+ L R   L  +L+   D DP    
Sbjct: 168 TEGEVIFSTLEGRPSADNFDPSPRLQEWLKATNIRITLQRLHTLGDNLL---DSDPEVLE 224

Query: 64  RYFYSIKDISIGG 76
           +Y+Y+I DI +GG
Sbjct: 225 KYYYAISDIVVGG 237

Length = 237

>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 77  RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
            C CNGH  +    DP       C C+ NT G  C+ C PGY     +
Sbjct: 1   PCDCNGHGSLSGQCDPGTG---QCECKPNTTGRRCDRCAPGYYGLPSQ 45

Length = 50

>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V)

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
           C CN H  + D  DPE      C C+    G +C+ C PGY
Sbjct: 1   CDCNPHGSLSDTCDPE---TGQCLCKPGVTGRHCDRCKPGY 38

This family is like pfam00008 but has 8 conserved cysteines instead of six. Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG3512|consensus	592		100.0
KOG0994|consensus	1758		100.0
KOG1836|consensus	1705		99.97
smart00136	238	LamNT Laminin N-terminal domain (domain VI). N-ter	99.87
PF00055	237	Laminin_N: Laminin N-terminal (Domain VI); InterPr	99.82
KOG0994|consensus	1758		99.01
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	98.92
KOG3512|consensus	592		98.85
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	98.72
KOG1836|consensus	1705		98.53
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	98.51
KOG1388|consensus	217		95.28
KOG3509|consensus	964		94.92
KOG4260|consensus	350		85.8
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	83.73

>KOG3512|consensus

Probab=100.00  E-value=5.3e-38  Score=257.31  Aligned_cols=126  Identities=37%  Similarity=0.733  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeeccccccccccc
Q psy57             2 EKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCN   81 (135)
Q Consensus         2 p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~Cn   81 (135)
                      +..+|.|+|+.|++||++-+++.|++||||+|||||||+|+|++++++..++     ....++|||||+||.|+|||+||
T Consensus       207 ~~~~~~~af~~l~~Rps~~dldss~vLqDwvTaTDiRvvl~Rp~s~G~~~dd-----e~~l~rYfYAisdl~VgGRCKCN  281 (592)
T KOG3512|consen  207 GSGGGKIAFFELEDRPSAFDLDSSPVLQDWVTATDIRVVLLRPASLGEEYDD-----EANLARYFYAISDLAVGGRCKCN  281 (592)
T ss_pred             CCCCceEEeeeecCCccccccccchhhhhheeeeeeEEEEechhhcCCcchh-----hhhhhhhheecccceeeeeeeec
Confidence            3567899999999999999999999999999999999999999987665543     34456799999999999999999


Q ss_pred             CCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57            82 GHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE  135 (135)
Q Consensus        82 GHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~  135 (135)
                      |||++|..+..   .++.|+|+|||+|+.|++|+|+|+++||.+++...+|+|.
T Consensus       282 gHAs~Cv~d~~---~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~  332 (592)
T KOG3512|consen  282 GHASRCVMDES---SHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECV  332 (592)
T ss_pred             CccceeeeccC---CceEEecccCCCCCCcccccccccCCCccccccCCCcccc
Confidence            99999998642   4689999999999999999999999999999999999874

>KOG0994|consensus

Probab=100.00  E-value=5.1e-34  Score=250.45  Aligned_cols=131  Identities=29%  Similarity=0.624  Sum_probs=116.6

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC   80 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C   80 (135)
                      .|+++|||+|++|++...+.+ +||+++|++++||||||.|++++++++.+.+..   +....+|||||+++.|.|+|+|
T Consensus       198 ~PstgGEVifrvl~P~~~ied-PYs~~IQ~~LKITNLRvn~tklhtlgdnllD~r---~E~~ekyyYAiy~~vVrGsCfC  273 (1758)
T KOG0994|consen  198 EPSTGGEVIFRVLDPAIDIED-PYSAKIQELLKITNLRVNFTKLHTLGDNLLDSR---EEIREKYYYAIYDLVVRGSCFC  273 (1758)
T ss_pred             CCCCCCeEEEEecCCCCCCCC-chhHHHHHHhhhhheeeeeEeeccccccccccc---cccccchhheeeeeeeecceee
Confidence            489999999999999766666 799999999999999999999999998887643   2234689999999999999999


Q ss_pred             cCCCCcCcccCCC---------CCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57            81 NGHADVCDILDPE---------DPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE  135 (135)
Q Consensus        81 nGHa~~C~~~~~~---------~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~  135 (135)
                      +|||++|.|.+..         .++.+.|.|+|||+|.+||.|+|+|++.||+|+....+|+|+
T Consensus       274 yGHAs~C~P~~g~~s~~~~~ta~mVHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCr  337 (1758)
T KOG0994|consen  274 YGHASQCAPVDGARSAKAPGTAHMVHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECR  337 (1758)
T ss_pred             cCchhhcccCCCCCcccCCCccceecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCccccc
Confidence            9999999997543         145689999999999999999999999999999999999984

>KOG1836|consensus

Probab=99.97  E-value=2.1e-32  Score=251.51  Aligned_cols=133  Identities=48%  Similarity=0.884  Sum_probs=124.0

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCC-CCCcccceEEEeeccccccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQ-DPTTTRRYFYSIKDISIGGRCR   79 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~-~~~~~~~~~y~i~~~~v~g~C~   79 (135)
                      .|++||+|+||+|++||++.+|..|++||+|++||+|||||.+++|+.++||+..-. ||.+.++|||||+||.|+|+|.
T Consensus       204 ~PL~ng~i~~s~l~grpsa~~f~~S~~L~ef~tat~ir~~l~r~~T~~~~l~~~~~~~dp~v~~~yyyaisdi~vggrc~  283 (1705)
T KOG1836|consen  204 SPLENGEIAFSTLEGRPSAYNFETSPELQEFTTATNIRIRLQRLNTFGLHLMSDEIFKDPKVTRSYYYAISDISVGGRCK  283 (1705)
T ss_pred             cccccchhhhhhhcCCCcccccCCCHHHHhhhccchhhhhhhhhcccchhhcchhhhcCCceeeeeeeeHhhccccceEE
Confidence            499999999999999999999999999999999999999999999999999887544 9999999999999999999999


Q ss_pred             ccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57            80 CNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE  135 (135)
Q Consensus        80 CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~  135 (135)
                      |||||..|..+...  ...+|.|+|||.|..|++|.|+|+++||++++...+++|+
T Consensus       284 cnGha~~c~~~~~~--~~lvc~c~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~  337 (1705)
T KOG1836|consen  284 CNGHASECDESEPQ--NLLVCRCQHNTCGLDCERCLPFFNDRPWARATSQTANECE  337 (1705)
T ss_pred             EccchhhcCcccCC--ccceeecccccccccccccccchhcchhhhhhhcccCcee
Confidence            99999999886432  2269999999999999999999999999999999999986

>smart00136 LamNT Laminin N-terminal domain (domain VI)

Probab=99.87  E-value=1.8e-22  Score=156.29  Aligned_cols=73  Identities=49%  Similarity=0.807  Sum_probs=66.4

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGG   76 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g   76 (135)
                      .|+++|+|+|++|+|||++.+|++|++||||++||||||+|+|++++++.+++.   .+.+.++|||||+||.|+|
T Consensus       166 ~P~~~g~V~fs~l~~rps~~~~~~S~~LQd~vtaTdiRi~l~rl~t~g~~~~~~---~~~~~~~yyYAIsdi~VgG  238 (238)
T smart00136      166 VPLEGGEIAFSLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDD---RPEVTRRYYYAISDIAVGG  238 (238)
T ss_pred             cCCCCCEEEEEecCCCCCCcCCCCCHHHHhheeeeEEEEEEEccCcCCcccccc---ccccccceeEEEEeeEecC
Confidence            499999999999999999999999999999999999999999999998887642   2456789999999999987

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.

>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue

Probab=99.82  E-value=2.1e-21  Score=150.35  Aligned_cols=73  Identities=42%  Similarity=0.728  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGG   76 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g   76 (135)
                      .|++||||+|++|+|||+..+++.|++||||++||||||+|++++++.+.+++.   ++.+.++|||||+||.|+|
T Consensus       165 ~P~~~g~V~f~~l~grP~~~~~~~S~~Lq~~~~aT~lRi~l~~~~t~~~~~~~~---~~~~~~~yyYAI~di~V~G  237 (237)
T PF00055_consen  165 EPLTGGEVIFSLLEGRPSANDFDPSPELQDWVTATNLRIRLTRLHTLGDELMDR---DPKVLRSYYYAISDIQVGG  237 (237)
T ss_dssp             SSTSTTEEEEESHHCCCCCTTHHHSHHHHHHCEEEEEEEEEEE----TTSSCHH----TTTGGG---EEEEEEEEE
T ss_pred             cCccccceeeeeccCCCCCCcCCCCHHHHhhhceeEEEEEEeeeccCCCcccCc---CcccCccccEEEEEEEEeC
Confidence            489999999999999999999889999999999999999999999988877652   5677889999999999987

Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.

>KOG0994|consensus

Probab=99.01  E-value=1.6e-10  Score=103.80  Aligned_cols=58  Identities=36%  Similarity=0.711  Sum_probs=48.1

Q ss_pred             ccccccccccCCCCcCcccCCC-----CCCceee-cCCCCCCCCCCCcCCcCccCCcCCCCCCC
Q psy57            72 ISIGGRCRCNGHADVCDILDPE-----DPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQSN  129 (135)
Q Consensus        72 ~~v~g~C~CnGHa~~C~~~~~~-----~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~  129 (135)
                      -..+..|+||||+.+|.++..+     ....|+| .|+|||.|.+||+|+|+||++|.++.+..
T Consensus       333 ~neCrkC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i~~p  396 (1758)
T KOG0994|consen  333 SNECRKCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRRDISDP  396 (1758)
T ss_pred             cccccccCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCCCCCCc
Confidence            3456689999999999987432     2346899 99999999999999999999999877654

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=98.92  E-value=2e-09  Score=64.33  Aligned_cols=42  Identities=40%  Similarity=0.952  Sum_probs=38.0

Q ss_pred             cccccCCCC---cCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCC
Q psy57            77 RCRCNGHAD---VCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR  124 (135)
Q Consensus        77 ~C~CnGHa~---~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~  124 (135)
                      +|.|++|++   .|+.      .+++|.|++++.|.+|++|+++||+.||.
T Consensus         1 ~C~C~~~g~~~~~C~~------~~G~C~C~~~~~G~~C~~C~~g~~~~~~~   45 (50)
T cd00055           1 PCDCNGHGSLSGQCDP------GTGQCECKPNTTGRRCDRCAPGYYGLPSQ   45 (50)
T ss_pred             CCcCcCCCCCCccccC------CCCEEeCCCcCCCCCCCCCCCCCccCCCC
Confidence            489999998   6875      57899999999999999999999999987

>KOG3512|consensus

Probab=98.85  E-value=1.4e-09  Score=90.69  Aligned_cols=61  Identities=30%  Similarity=0.610  Sum_probs=51.0

Q ss_pred             cccccccccccCCCCcCcccCCC-----CCCceee-cCCCCCCCCCCCcCCcCccCCcCCCCCCCCC
Q psy57            71 DISIGGRCRCNGHADVCDILDPE-----DPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP  131 (135)
Q Consensus        71 ~~~v~g~C~CnGHa~~C~~~~~~-----~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~  131 (135)
                      ++..+-.|+||+||.+|.++...     ....++| .|+|||+|.+|..|++|||+++..|-+.+.+
T Consensus       327 ~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrka  393 (592)
T KOG3512|consen  327 PANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKA  393 (592)
T ss_pred             CCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhh
Confidence            55667789999999999886432     2235799 9999999999999999999999999887654

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=98.72  E-value=5.1e-09  Score=62.17  Aligned_cols=42  Identities=36%  Similarity=0.820  Sum_probs=35.4

Q ss_pred             ccccCCC---CcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCC
Q psy57            78 CRCNGHA---DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQ  125 (135)
Q Consensus        78 C~CnGHa---~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p  125 (135)
                      |.|++|+   ..|++      .+++|.|+++++|+.|++|+++||+.|+.+
T Consensus         1 C~C~~~~~~~~~C~~------~~G~C~C~~~~~G~~C~~C~~g~~~~~~~~   45 (49)
T PF00053_consen    1 CDCNPHGSSSQTCDP------STGQCVCKPGTTGPRCDQCKPGYFGLPSDP   45 (49)
T ss_dssp             ESSTTCCBCCSSEEE------TCEEESBSTTEESTTS-EE-TTEECSTTSG
T ss_pred             CcCcCCCCCCCcccC------CCCEEeccccccCCcCcCCCCccccccCCC
Confidence            7888888   67876      579999999999999999999999999854

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>KOG1836|consensus

Probab=98.53  E-value=1.2e-07  Score=89.34  Aligned_cols=110  Identities=29%  Similarity=0.499  Sum_probs=73.4

Q ss_pred             CCCCCCCCCcHHHHHHHHhccceEEeccccccccccccc----cCC-CC--Ccc---------------------cceEE
Q psy57            16 RPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSM----ADQ-DP--TTT---------------------RRYFY   67 (135)
Q Consensus        16 rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~----~~~-~~--~~~---------------------~~~~y   67 (135)
                      .|....+.+...|++.   |.+||+.++.....+.+.++    +.. .+  ...                     +..|.
T Consensus       640 ~~~~~~~~~~~~l~~~---~r~~i~~~~~~~~~~~~~~v~le~a~~~~~~~~~~~~wve~c~C~~g~tG~~Ce~C~~gfr  716 (1705)
T KOG1836|consen  640 APSLRLFDFRRLLQNL---TRGRIRGTYSDACLGYLDNVTLESARPLGDGAGATDTWVEQCTCPVGYTGQFCESCAPGFR  716 (1705)
T ss_pred             ccccChhhHhhhhccc---cccceEEEEcccccccccccchhcccccCCCCCCccchhhhccCCCCcccchhhhcchhhh
Confidence            3444444455556655   99999999988765544433    111 11  111                     11132


Q ss_pred             E----eecccccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCC-CCCCCC
Q psy57            68 S----IKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS-NKPFSC  134 (135)
Q Consensus        68 ~----i~~~~v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~-~~~~~C  134 (135)
                      .    ..+...+..|.||||+..|++      .+|.|.|+|||.|+.|++|++|||+.+...... -++..|
T Consensus       717 r~~~~~~~~~~c~~C~cngh~~~Cd~------~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~C  782 (1705)
T KOG1836|consen  717 RLSPQLGPFCPCIPCDCNGHSNICDP------RTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPC  782 (1705)
T ss_pred             cccccCCCCCcccccccCCccccccC------CCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCC
Confidence            2    333344557999999999987      688999999999999999999999999876554 244444

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=98.51  E-value=1.2e-07  Score=55.77  Aligned_cols=37  Identities=41%  Similarity=1.066  Sum_probs=32.6

Q ss_pred             cccc--CCC-CcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccC
Q psy57            78 CRCN--GHA-DVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQ  120 (135)
Q Consensus        78 C~Cn--GHa-~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~  120 (135)
                      |.|+  |++ ..|++      .+++|.|++++.|.+|++|+++||+
T Consensus         1 C~C~~~G~~~~~C~~------~~G~C~C~~~~~G~~C~~C~~g~~g   40 (46)
T smart00180        1 CDCDPGGSASGTCDP------DTGQCECKPNVTGRRCDRCAPGYYG   40 (46)
T ss_pred             CcCCCCCCCCCcccC------CCCEEECCCCCCCCCCCcCCCCcCC
Confidence            7788  777 67875      4689999999999999999999998

>KOG1388|consensus

Probab=95.28  E-value=0.0092  Score=45.70  Aligned_cols=40  Identities=38%  Similarity=0.962  Sum_probs=33.2

Q ss_pred             ccccccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCC
Q psy57            74 IGGRCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQK  121 (135)
Q Consensus        74 v~g~C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~  121 (135)
                      .+-.|.||||++-+.        .-+| .|+..|.|.+|++|..+|+++
T Consensus        48 ~cP~~~cNGh~~c~t--------~~v~~~~~N~~~g~~c~kc~~g~~Gd   88 (217)
T KOG1388|consen   48 FCPLCQCNGHSDCNT--------QHVCWRCENGTTGAHCEKCIVGFYGD   88 (217)
T ss_pred             cChHHHhcCCCCccc--------ceeeeeccCccccccCCceEEEEEec
Confidence            455899999985443        3478 999999999999999999986

>KOG3509|consensus

Probab=94.92  E-value=0.016  Score=52.89  Aligned_cols=42  Identities=40%  Similarity=0.813  Sum_probs=37.8

Q ss_pred             cccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCC
Q psy57            77 RCRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWR  124 (135)
Q Consensus        77 ~C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~  124 (135)
                      .|.|++|++.|..      ..+.| .|+|||.|..|+.|.++|+.++..
T Consensus       753 ~c~~~~h~~~c~~------~~~~nt~~q~~~~~~~~~~~~~g~~~da~~  795 (964)
T KOG3509|consen  753 DCECNSHISQCED------DLGYNTDCQNNTEGDRCELCSPGTYGDARR  795 (964)
T ss_pred             ccccCCCcccccc------cccccccccccCccceeeecCCCccccCcc
Confidence            5899999999987      46789 999999999999999999988755

>KOG4260|consensus

Probab=85.80  E-value=1.4  Score=35.44  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             cCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCC
Q psy57            86 VCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQK  121 (135)
Q Consensus        86 ~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~  121 (135)
                      .|.-+.. +.+.+.|.|+...+|+.|..|-++|+-.
T Consensus       157 ~C~GdGs-R~GsGkCkC~~GY~Gp~C~~Cg~eyfes  191 (350)
T KOG4260|consen  157 SCHGDGS-REGSGKCKCETGYTGPLCRYCGIEYFES  191 (350)
T ss_pred             cccCCCC-CCCCCcccccCCCCCccccccchHHHHh
Confidence            4543322 2367899999999999999999999743

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=83.73  E-value=1.1  Score=24.03  Aligned_cols=26  Identities=31%  Similarity=0.782  Sum_probs=18.4

Q ss_pred             cccCCCCcCcccCCCCCCceeecCCCCCCCCCC
Q psy57            79 RCNGHADVCDILDPEDPYHRICRCQHNTCGHNC  111 (135)
Q Consensus        79 ~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~C  111 (135)
                      .|++|. .|..      ..++|.|.....|+.|
T Consensus         7 ~C~~~G-~C~~------~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHG-TCVS------PCGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCC-EEeC------CCCEEECCCCCcCCCC
Confidence            366655 6653      2478999999999876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
2y38_A	403	Laminin Alpha5 Chain N-Terminal Fragment Length = 4		1e-41
4aqt_A	375	Laminin Gamma1 Ln-Le1-2 Structure Length = 375		9e-21
4aqs_A	525	Laminin Beta1 Ln-Le1-4 Structure Length = 525		5e-12
3zyj_B	426	Netring1 In Complex With Ngl1 Length = 426		2e-11
3zyg_A	353	Netring2 Lam And Egf1 Domains Length = 353		6e-10
3tbd_A	338	Crystal Structure Of Domain Vi And Le1 Of Human Net		6e-10

>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403

Iteration: 1
 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 96/132 (72%)
Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SL++ RP   NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct: 192 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 251
Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct: 252 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 311
Query: 124 RQSQSNKPFSCE 135
           + + ++    C+
Sbjct: 312 KPATTDSANECQ 323

>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 8   ITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY 67
           +  S L+ RPS  NF NS  LQEW  AT++R+ L R       + +    +P   + Y+Y
Sbjct: 189 VAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYY 244
Query: 68  SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQ 127
           +I D ++GGRC+CNGHA  C + +  D    +C C+HNT G +CE C P +  + WR++ 
Sbjct: 245 AISDFAVGGRCKCNGHASEC-VKNEFD--KLMCNCKHNTYGVDCEKCLPFFNDRPWRRAT 301
Query: 128 SNKPFSC 134
           +     C
Sbjct: 302 AESASEC 308

>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure Length = 525

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 5   ENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRR 64
           E ++    LD    +++ + S R+Q   + TN+R++ ++   L  +L+   D       +
Sbjct: 185 EGEVIFRALDPAFKIEDPY-SPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRMEIREK 240
Query: 65  YFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGYE 119
           Y+Y++ D+ + G C C GHA  C  +D      E   H  C C+HNT G NCE+C   Y 
Sbjct: 241 YYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYH 300
Query: 120 QKAWRQSQSNKPFSCE 135
              WR ++     +C+
Sbjct: 301 DLPWRPAEGRNSNACK 316

>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1 Length = 426

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 24  NSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGH 83
            + +L+++   T++R+RLLR    +G +      D     RYFY+I DI + GRC+CN H
Sbjct: 249 TTKKLRDFFTVTDLRIRLLRPA--VGEIFV----DELHLARYFYAISDIKVRGRCKCNLH 302
Query: 84  ADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           A VC      D     C C+HNT G +C  C   Y+ + W
Sbjct: 303 ATVCVY----DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338

>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains Length = 353

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 28  LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 87
           L+E+   T++R+RLLR    LG      +       +YFY+I +I + GRC+CN HA++C
Sbjct: 243 LKEFFTLTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 296
Query: 88  DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
            + +        C C+HNT G +C  C   +  ++WR
Sbjct: 297 SMREGS----LQCECEHNTTGPDCGKCKKNFRTRSWR 329

>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2 Length = 338

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 28  LQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRCNGHADVC 87
           L+E+   T++R+RLLR    LG      +       +YFY+I +I + GRC+CN HA++C
Sbjct: 226 LKEFFTLTDLRMRLLRPA--LGGTYVQREN----LYKYFYAISNIEVIGRCKCNLHANLC 279
Query: 88  DILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWR 124
            + +        C C+HNT G +C  C   +  ++WR
Sbjct: 280 SMREGS----LQCECEHNTTGPDCGKCKKNFRTRSWR 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	1e-33
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	1e-26
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	3e-24
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	5e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-21
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	4e-21
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	8e-07
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	2e-04

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score =  120 bits (301), Expect = 1e-33
 Identities = 74/132 (56%), Positives = 96/132 (72%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
           E  +I +SL++ RP   NF  S  L+++T+ATN+RLR LRT  LLGHLM  A +DPT TR
Sbjct: 192 ENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTR 251

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
           RY+YSIKDISIGGRC C+GHADVCD  DP DP+   C CQHNTCG +C+ CCPG+ Q+ W
Sbjct: 252 RYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW 311

Query: 124 RQSQSNKPFSCE 135
           + + ++    C+
Sbjct: 312 KPATTDSANECQ 323

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score =  102 bits (254), Expect = 1e-26
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
            E ++    LD    +     S R+Q   + TN+R++ ++   L  +L+   D       
Sbjct: 184 TEGEVIFRALDPAFKI-EDPYSPRIQNLLKITNLRIKFVKLHTLGDNLL---DSRMEIRE 239

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDP-----EDPYHRICRCQHNTCGHNCEVCCPGY 118
           +Y+Y++ D+ + G C C GHA  C  +D      E   H  C C+HNT G NCE+C   Y
Sbjct: 240 KYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFY 299

Query: 119 EQKAWRQSQSNKPFSCE 135
               WR ++     +C+
Sbjct: 300 HDLPWRPAEGRNSNACK 316

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 94.8 bits (235), Expect = 3e-24
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 4   EENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTR 63
               +  S L+ RPS  NF NS  LQEW  AT++R+ L R       +      +P   +
Sbjct: 185 TGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVF----NEPKVLK 240

Query: 64  RYFYSIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAW 123
            Y+Y+I D ++GGRC+CNGHA  C      +    +C C+HNT G +CE C P +  + W
Sbjct: 241 SYYYAISDFAVGGRCKCNGHASECV---KNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPW 297

Query: 124 RQSQSNKPFSC 134
           R++ +     C
Sbjct: 298 RRATAESASEC 308

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 77  RCRCNGHADVC---DILDPEDPYHRIC-RCQHNTCGHNCEVCCPGY 118
            C CNG +  C     L     +   C  C+ NT G  CE C   +
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF 355

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 88.0 bits (217), Expect = 1e-21
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 11  SLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIK 70
            L +          + +L+++   T++R+RLLR        +     D     RYFY+I 
Sbjct: 236 RLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLR------PAVGEIFVDELHLARYFYAIS 289

Query: 71  DISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNK 130
           DI + GRC+CN HA VC      D     C C+HNT G +C  C   Y+ + W       
Sbjct: 290 DIKVRGRCKCNLHATVCV----YDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345

Query: 131 PFSCE 135
                
Sbjct: 346 IPKGA 350

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338

 Score = 85.7 bits (211), Expect = 4e-21
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)

Query: 11  SLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIK 70
            L +         ++  L+E+   T++R+RLLR        +           +YFY+I 
Sbjct: 209 DLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLR------PALGGTYVQRENLYKYFYAIS 262

Query: 71  DISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNK 130
           +I + GRC+CN HA++C            C C+HNT G +C  C   +  ++WR      
Sbjct: 263 NIEVIGRCKCNLHANLCS----MREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLP 318

Query: 131 PFSCE 135
                
Sbjct: 319 LPHGS 323

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
           C C G +    +   ++       C   T G  CE+C  GY       +   + 
Sbjct: 1   CPCPGGSSCAIVPKTKEVVC--THCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 77  RCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE 135
            C+CN + D   + +         +C +NT G  C+ C  G+       + ++K  +C 
Sbjct: 55  PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACA 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	100.0
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	100.0
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	100.0
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	100.0
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.97
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	98.88
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	98.19
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.9
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.83
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	94.74
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	91.5

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.7e-41  Score=274.01  Aligned_cols=135  Identities=55%  Similarity=1.087  Sum_probs=123.5

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC   80 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C   80 (135)
                      +|+++|||+|++|+|||++.+|++|++||+|++||+|||||++++|+.++++..+..+|...++|||+|++|.++|+|+|
T Consensus       189 ~P~~~g~v~f~~l~gRP~~~~~~~s~~lq~~~~aT~iRi~~~~~~t~~~~l~~~~~~~~~~~~~yyyai~~~~vgg~C~C  268 (403)
T 2y38_A          189 VPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVC  268 (403)
T ss_dssp             SSCSSCEEEEESSSSSGGGTTGGGCHHHHHHHEEEEEEEEEEECCCCTTCHHHHHHTCTTTGGGCCCEEEEEEEEEECCC
T ss_pred             cCCCCCeEEEEecCCCCCcccCCcCHHHHhhhccceEEEEEEecCcccccccccccccccccccceeecccCcccccccc
Confidence            58999999999999999999999999999999999999999999999999887666778888999999999999999999


Q ss_pred             cCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57            81 NGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE  135 (135)
Q Consensus        81 nGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~  135 (135)
                      ||||+.|++.+..+..+++|.|+|||+|.+||+|+++|+++||.+++...+++|+
T Consensus       269 nGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~  323 (403)
T 2y38_A          269 HGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQ  323 (403)
T ss_dssp             TTBCSCEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCC
T ss_pred             CCCccccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCcccc
Confidence            9999999876444445689999999999999999999999999999887777774

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=100.00  E-value=2.9e-36  Score=245.09  Aligned_cols=128  Identities=36%  Similarity=0.771  Sum_probs=115.6

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC   80 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C   80 (135)
                      +|+++|||+|++|++||++.+|++|++||||++||+|||+|++++++.+.+++    ++.+.++|||||++|.|+|+|.|
T Consensus       182 ~p~~~g~v~~~~l~~rp~~~~~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~~----~~~~~~~yyYai~di~v~g~C~C  257 (375)
T 4aqt_A          182 SPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFN----EPKVLKSYYYAISDFAVGGRCKC  257 (375)
T ss_dssp             CSSSCEEEEEETTTTCTTGGGGGGCHHHHHHTEEEEEEEEEEECCCCSGGGSC----CHHHHTTCCCEEEEEEEEEEECC
T ss_pred             cCCcCCeEEEEeccCCCCcccCCcCHHHhhhhhheeeeeeecccccCcccccc----cccccccceeeecccccCceecC
Confidence            58999999999999999999999999999999999999999999998887763    55667899999999999999999


Q ss_pred             cCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCCCCC
Q psy57            81 NGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPFSCE  135 (135)
Q Consensus        81 nGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~~C~  135 (135)
                      |||++.|.....   ..+.|.|+|||+|.+|++|+++|++.||.+++...++.|+
T Consensus       258 ngh~s~c~~~~~---~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~  309 (375)
T 4aqt_A          258 NGHASECVKNEF---DKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL  309 (375)
T ss_dssp             TTSCSCEEECTT---SCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCC
T ss_pred             CCCCcccCCCCC---CCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCC
Confidence            999999976432   4567899999999999999999999999999887777764

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=235.30  Aligned_cols=123  Identities=31%  Similarity=0.656  Sum_probs=104.2

Q ss_pred             CCCCCCeEEEEec------CCCCCCCCC-------CCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEE
Q psy57             1 MEKEENKITISLL------DHRPSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFY   67 (135)
Q Consensus         1 ~p~~~g~v~~~~l------~~rp~~~~~-------~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y   67 (135)
                      +|+++|||+|+++      .| |++.++       +.|++||||++||||||||+|++++. .+     .++.+.++|||
T Consensus       214 ~P~~~GeV~f~~~~~f~~~~g-P~~~~~~~~y~~~~~S~~Lqd~~taT~iRi~l~r~~t~~-~~-----~~~~~~~~yyY  286 (426)
T 3zyj_B          214 YTTNSKIIHFEIKDRFAFFAG-PRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGE-IF-----VDELHLARYFY  286 (426)
T ss_dssp             SSTTTTEEEECSHHHHHHHHC-SSCCCHHHHHHHHHHCHHHHHHSEEEEEEEEEEECCCSS-SS-----CCSSCGGGCCC
T ss_pred             CCCCCCEEEEEeccccccccC-CCcccccccccccccCHHHHhhhcceeEEEEEeccccCC-cc-----ccccccceecc
Confidence            5899999999974      46 887764       46899999999999999999999753 22     23456689999


Q ss_pred             EeecccccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCC-----CCCCCC
Q psy57            68 SIKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS-----NKPFSC  134 (135)
Q Consensus        68 ~i~~~~v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~-----~~~~~C  134 (135)
                      ||+||.|+|+|+|||||+.|.+..    +.++|.|+|||+|++||+|+++|+++||.+|+.     ..+++|
T Consensus       287 AI~d~~v~g~C~CnGHas~C~~~~----g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C  354 (426)
T 3zyj_B          287 AISDIKVRGRCKCNLHATVCVYDN----SKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANAC  354 (426)
T ss_dssp             EEEEEECEEEECCSSSCSCEEEET----TEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCC
T ss_pred             eeecccccccCcCCCchhhcCCCC----CCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcc
Confidence            999999999999999999998753    457999999999999999999999999998863     455666

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=100.00  E-value=3.5e-34  Score=229.33  Aligned_cols=117  Identities=32%  Similarity=0.715  Sum_probs=96.4

Q ss_pred             C-CCCCeEEEEecC-----CCCCCCCC-------CCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEE
Q psy57             2 E-KEENKITISLLD-----HRPSMKNF-------FNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYS   68 (135)
Q Consensus         2 p-~~~g~v~~~~l~-----~rp~~~~~-------~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~   68 (135)
                      | .++|+|+|++++     ..|++.++       +.|++||||++||||||||+|+++. +.+.+   +  ...++||||
T Consensus       187 P~~~gg~v~f~v~~r~~~~~gP~~~~~~~~y~~~~~s~~Lqd~~taT~iRi~l~r~~~~-~~~~~---~--~~~~~yyYA  260 (338)
T 3tbd_A          187 GSKKEKHVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALG-GTYVQ---R--ENLYKYFYA  260 (338)
T ss_dssp             TSSCCCEEEECSHHHHHHHHTTTTCCHHHHHHHHHHSTTHHHHTEEEEEEEEEEECCCT-TSCCC---T--TCGGGCCCE
T ss_pred             CCCCCceEEEEecccccccCCCccccccccccccccCHHHHHhhhheeeeeEeeccccC-ccccc---c--cccceeEEE
Confidence            5 557889998754     12777654       3478999999999999999999753 33221   2  235789999


Q ss_pred             eecccccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCC
Q psy57            69 IKDISIGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQS  128 (135)
Q Consensus        69 i~~~~v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~  128 (135)
                      |+||.|+|+|.|||||+.|.+..    +.++|.|+|||+|++|++|+|+|+++||+||+.
T Consensus       261 I~di~v~G~C~CnGHA~~C~~~~----g~~~C~C~HnT~G~~Ce~C~p~y~~~pw~pg~~  316 (338)
T 3tbd_A          261 ISNIEVIGRCKCNLHANLCSMRE----GSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSY  316 (338)
T ss_dssp             EEEEECEEEECCTTBCSCEEEET----TEEEECCCTTEESTTSCEECTTCBSSCCCCCBC
T ss_pred             eecceeeccccccCCcCccCCCC----CCceecCCCCCCCCCCcccCccccCCCCCCCCc
Confidence            99999999999999999999853    457899999999999999999999999999976

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.97  E-value=2.2e-32  Score=229.48  Aligned_cols=128  Identities=28%  Similarity=0.588  Sum_probs=110.3

Q ss_pred             CCCCCCeEEEEecCCCCCCCCCCCcHHHHHHHHhccceEEeccccccccccccccCCCCCcccceEEEeecccccccccc
Q psy57             1 MEKEENKITISLLDHRPSMKNFFNSTRLQEWTRATNVRLRLLRTKNLLGHLMSMADQDPTTTRRYFYSIKDISIGGRCRC   80 (135)
Q Consensus         1 ~p~~~g~v~~~~l~~rp~~~~~~~s~~l~~~~~~T~lRir~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~~~~v~g~C~C   80 (135)
                      +|+++|||+|++|++||++.+ ++|++||+|++||+|||||+|++++.+.+++   .++.+.++|||||+||.|.|+|+|
T Consensus       181 ~p~~~g~v~~~~~~~~~~~~~-~~s~~l~~~~~~t~iri~~~~~~~~~~~~~~---~~~~~~~~~~Yai~di~v~grC~C  256 (525)
T 4aqs_A          181 EPSTEGEVIFRALDPAFKIED-PYSPRIQNLLKITNLRIKFVKLHTLGDNLLD---SRMEIREKYYYAVYDMVVRGNCFC  256 (525)
T ss_dssp             CSTTTCEEEEESSCSSSCCSC-TTSHHHHHHHEEEEEEEEEEECCCTTCCCTT---CCHHHHTTCCCEEEEEEEEEECCC
T ss_pred             CCCCCCeEEEEecCCCcccCC-CCChhhhhhhhhhhhhhheeccccccccccc---ccccccccccEEEEeeEECeEecc
Confidence            589999999999999999865 7899999999999999999999999888765   233456789999999999999999


Q ss_pred             cCCCCcCcccCCC-----CCCceeecCCCCCCCCCCCcCCcCccCCcCCCCCCCCCC
Q psy57            81 NGHADVCDILDPE-----DPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKPF  132 (135)
Q Consensus        81 nGHa~~C~~~~~~-----~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p~~p~~~~~~~  132 (135)
                      ||||+.|.+....     +...+.|.|+|+|.|.+|++|.++|++.||.+++-...+
T Consensus       257 nGHa~~C~p~~g~~~~~~g~~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c~~~~  313 (525)
T 4aqs_A          257 YGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN  313 (525)
T ss_dssp             TTBCSCEECC------CCSCCCCEECCCTTEESSSSCEECTTCCSSCCCCCBTTBCC
T ss_pred             CCccccCCCcCCcccCCCCCcCccccCcCCCcCCCCcCCCCccCCCccCCCcccCCC
Confidence            9999999875421     345678999999999999999999999999987655443

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=98.88  E-value=8.2e-10  Score=90.33  Aligned_cols=56  Identities=34%  Similarity=0.612  Sum_probs=45.4

Q ss_pred             cccccccccCCCCcCcccC------------CCCCCceee-cCCCCCCCCCCCcCCcCccCCcCCCCCC
Q psy57            73 SIGGRCRCNGHADVCDILD------------PEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQS  128 (135)
Q Consensus        73 ~v~g~C~CnGHa~~C~~~~------------~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p~~~  128 (135)
                      ..+..|.||||++.|.++.            .....+++| .|+|||+|.+||+|++|||++|+.++..
T Consensus       320 ~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p~~~~~~  388 (403)
T 2y38_A          320 NECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDS  388 (403)
T ss_dssp             CCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECTTSCTTS
T ss_pred             ccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCCCCCCCC
Confidence            4577999999999995421            011357999 7999999999999999999999997654

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=98.19  E-value=2.4e-07  Score=75.10  Aligned_cols=50  Identities=28%  Similarity=0.538  Sum_probs=40.1

Q ss_pred             cccccccccCCCCcCcccCC---CCCCceee-cCCCCCCCCCCCcCCcCccCCc
Q psy57            73 SIGGRCRCNGHADVCDILDP---EDPYHRIC-RCQHNTCGHNCEVCCPGYEQKA  122 (135)
Q Consensus        73 ~v~g~C~CnGHa~~C~~~~~---~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p  122 (135)
                      ..+..|.||+|+..|..+..   ....+|+| .|++|++|.+|++|++|||+.+
T Consensus       306 ~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~  359 (375)
T 4aqt_A          306 SECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLG  359 (375)
T ss_dssp             CCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCT
T ss_pred             CCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCc
Confidence            34668999999999865321   12357999 7999999999999999999875

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.90  E-value=3.7e-06  Score=60.38  Aligned_cols=45  Identities=29%  Similarity=0.726  Sum_probs=37.8

Q ss_pred             ccccccccCCCC-----cCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCC
Q psy57            74 IGGRCRCNGHAD-----VCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWR  124 (135)
Q Consensus        74 v~g~C~CnGHa~-----~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~  124 (135)
                      .+..|.|++|++     .|+.      .+++| .|+++|+|.+|++|+++||+.+..
T Consensus        52 ~C~~C~C~~~~~~~~~~~C~~------~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~  102 (162)
T 1klo_A           52 LCRPCQCNDNIDPNAVGNCNR------LTGECLKCIYNTAGFYCDRCKEGFFGNPLA  102 (162)
T ss_dssp             EEEECCSTTCBCTTCSCCBCT------TTCCBCCBCTTEETTTTCEECTTEEECTTC
T ss_pred             CCeeCcCCCCCCcccCCcccC------CCCcccCCCCCCcCCCcCcCchhhcCCccc
Confidence            557899999874     4543      57899 699999999999999999998865

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.83  E-value=5.4e-06  Score=59.54  Aligned_cols=45  Identities=31%  Similarity=0.807  Sum_probs=36.1

Q ss_pred             ccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCCC
Q psy57            78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQ  125 (135)
Q Consensus        78 C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p  125 (135)
                      |.|++|+ .|+....  ...++| .|+|+|+|.+||+|+++||++|+.+
T Consensus         1 C~C~~~g-~C~~~~~--~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~   46 (162)
T 1klo_A            1 CPCPGGS-SCAIVPK--TKEVVCTHCPTGTAGKRCELCDDGYFGDPLGS   46 (162)
T ss_dssp             CCSCTTC-CEEECSS--SCCEEECSCCTTEESTTSCEECTTEEEETTCT
T ss_pred             CcCcCcC-cccccCC--CCCEEeCCCCCCCcCCCCcCCCCCCcCCcccc
Confidence            6687765 7876421  145799 8999999999999999999999875

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=94.74  E-value=0.02  Score=47.54  Aligned_cols=48  Identities=23%  Similarity=0.422  Sum_probs=25.9

Q ss_pred             ccccccccCCCCcCcccCCCCCCceeecCCCCCCCCCCCcCCcCccCCc
Q psy57            74 IGGRCRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKA  122 (135)
Q Consensus        74 v~g~C~CnGHa~~C~~~~~~~~~~~~C~C~hnT~G~~Ce~C~p~y~~~p  122 (135)
                      .+..|.|+.+. .|......++.++.|.|+.++.|.+|++|+++|++.+
T Consensus       437 ~C~~C~C~~~g-tc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~  484 (525)
T 4aqs_A          437 GCKSCACNPLG-TIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLS  484 (525)
T ss_dssp             SSEECCCCTTT-BCCSSCCBCTTTCCBCBCTTCCSTTTCC---------
T ss_pred             CCccCCCCCCc-eecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCC
Confidence            35567776543 2222222223567899999999999999999998764

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=91.50  E-value=0.044  Score=44.95  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=5.2

Q ss_pred             ccccccccCCCCcCcccCCCCCCceeec----CCCCCCCCCCCcCCcCccCCc
Q psy57            74 IGGRCRCNGHADVCDILDPEDPYHRICR----CQHNTCGHNCEVCCPGYEQKA  122 (135)
Q Consensus        74 v~g~C~CnGHa~~C~~~~~~~~~~~~C~----C~hnT~G~~Ce~C~p~y~~~p  122 (135)
                      .+..|.|++|+..|+..      ++.|.    |..++   .| .|++||++..
T Consensus       353 ~C~pC~Cn~~g~~CD~~------t~~C~ngg~C~~~~---~C-~C~~G~~G~~  395 (426)
T 3zyj_B          353 ACIPSISSIGTNVCDNE------LLHCQNGGTCHNNV---RC-LCPAAYTGIL  395 (426)
T ss_dssp             CCCCCCC----------------------------------------------
T ss_pred             cccCCCCCCCcCccccC------cccCCCCCCcCCCC---CC-cCCCCCcCCC
Confidence            45678999999999763      34553    66655   67 7777777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1kloa1	55	g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu	2e-06
d1kloa2	56	g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M	4e-06

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGYEQKAWRQSQSNKP 131
           C C G +     + P+        C   T G  CE+C  GY       +   + 
Sbjct: 1   CPCPGGSSCA--IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 78  CRCNGHADVCDILDPEDPYHRICRCQHNTCGHNCEVCCPGY 118
           C+CN + D   + +         +C +NT G  C+ C  G+
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGF 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	99.08
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.83
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.19
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	84.35

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.8e-11  Score=72.70  Aligned_cols=46  Identities=26%  Similarity=0.629  Sum_probs=36.7

Q ss_pred             ccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCC
Q psy57            78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWR  124 (135)
Q Consensus        78 C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~  124 (135)
                      |.||+|++.... ...++.+++| .|+|||+|.+|++|+++||+++..
T Consensus         1 C~Cn~~~~~~~~-~~Cd~~tG~C~~C~~nt~G~~Cd~C~~G~yg~~~~   47 (56)
T d1kloa2           1 CQCNDNIDPNAV-GNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLA   47 (56)
T ss_dssp             CCSTTCBCTTCS-CCBCTTTCCBCCBCTTEETTTTCEECTTEEECTTC
T ss_pred             CcCCCCCCCccc-CccCCCCCCCCCCCCCCCCCCcCcccCCcccCCCC
Confidence            789999865432 2234578999 699999999999999999987644

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=4.9e-10  Score=66.15  Aligned_cols=47  Identities=26%  Similarity=0.658  Sum_probs=37.3

Q ss_pred             ccccCCCCcCcccCCCCCCceee-cCCCCCCCCCCCcCCcCccCCcCCCCC
Q psy57            78 CRCNGHADVCDILDPEDPYHRIC-RCQHNTCGHNCEVCCPGYEQKAWRQSQ  127 (135)
Q Consensus        78 C~CnGHa~~C~~~~~~~~~~~~C-~C~hnT~G~~Ce~C~p~y~~~p~~p~~  127 (135)
                      |.|++|++-+....   .++++| .|+++|+|++||+|+++||++|+.++.
T Consensus         1 CpC~~~~~c~~~~~---~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~~~g   48 (55)
T d1kloa1           1 CPCPGGSSCAIVPK---TKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNG   48 (55)
T ss_dssp             CCSCTTCCEEECSS---SCCEEECSCCTTEESTTSCEECTTEEEETTCTTS
T ss_pred             CcCcCCCccceeCC---CCCEEcCCCCCCCccCcccccCCccccCcccCCC
Confidence            77999885443221   246789 899999999999999999999997654

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=2.6e-07  Score=53.23  Aligned_cols=27  Identities=30%  Similarity=0.801  Sum_probs=25.3

Q ss_pred             CceeecCCCCCCCCCCCcCCcCccCCc
Q psy57            96 YHRICRCQHNTCGHNCEVCCPGYEQKA  122 (135)
Q Consensus        96 ~~~~C~C~hnT~G~~Ce~C~p~y~~~p  122 (135)
                      .+++|.|+.+++|..|++|+++||+.+
T Consensus        18 ~tGqC~Ck~~v~G~~Cd~C~~g~~~~~   44 (51)
T d1kloa3          18 VTGQCQCLPHVSGRDCGTCDPGYYNLQ   44 (51)
T ss_dssp             TTCCCCBCTTEESTTCCEECTTCBCGG
T ss_pred             CCCeecCCCCCcCCCcccccccccCCC
Confidence            678999999999999999999999875

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=0.13  Score=27.57  Aligned_cols=17  Identities=35%  Similarity=0.960  Sum_probs=13.5

Q ss_pred             eeecCC-CCCCCCCCCcC
Q psy57            98 RICRCQ-HNTCGHNCEVC  114 (135)
Q Consensus        98 ~~C~C~-hnT~G~~Ce~C  114 (135)
                      +.|.|. ....|+.||.|
T Consensus        22 G~C~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5          22 GSCVCIQPGSYGDTCEKC   39 (43)
T ss_dssp             TEEEECCSSCBSTTSCBC
T ss_pred             CEeEeCCCCccCCccccC
Confidence            567784 46889999998