Psyllid ID: psy5819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR
Secondary Structure (PSIPRED)
ccccccccEEEEcccEEEEEEEEcccccccccEEEcccEEEEcccHHHHHHHHccccccccccEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEEEcccEEEEEEEccccccccccEEEEccEEEEccccEEHEHHHHccccccccEEEEcccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHcHHcccHHHHHHHcHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpiivkescwrqtpskvfitvplynvpthkvdvftseSYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSgnyecngntrapcgdedapkvsnEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAlplvrsqgligvtftprvfptpmrestapeEEEWLQKQAEARQACGFiaadlrpeennpdwvkakgdqmfrdgnyLGAVSAYshglqlcpnlaclYSNRAAAHLALNNLHkavddasevr
Flexible Loop (DISEMBL)
mpiivkescwrqtpskvfitvplynvpTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIrlenneaefelikseqamwdekkDKRSKEavsvqmkletqeqtdvsnmkERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEekraalplvrsqgligvtftprvfptpmRESTAPEEEEWLQKQAEARQACGFIaadlrpeennpDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLhkavddasevr
Low Complexity Region (SEG)
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRaaahlalnnlhKAVDDASEVR
Disordered region (IsUnstruct)
**IIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLE************************************************************************************************************ALPLVRSQGLIGVTFTPRVF***********************QACGFIAADL*******DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH**********
Disordered Region (DISOPRED)
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ****************************************LSGNYECNGNT************************************************VRSQGLIGVTFTPRVFPTPMRES************************************KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR
Disordered Region (DISEMBL)
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAM***************QMKLET*************KWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTP****************AEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR
Disordered Region (DISPRO)
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLK***KRAALPLVRSQGLIGVTFTPRVFPTPM*ESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q8WXU2	420	Dyslexia susceptibility 1	no	N/A	0.989	0.697	0.345	5e-45
Q863A6	420	Dyslexia susceptibility 1	N/A	N/A	0.986	0.695	0.346	9e-45
Q863A5	420	Dyslexia susceptibility 1	N/A	N/A	0.986	0.695	0.346	1e-44
Q863A4	420	Dyslexia susceptibility 1	N/A	N/A	0.986	0.695	0.343	1e-44
Q863A7	420	Dyslexia susceptibility 1	yes	N/A	0.986	0.695	0.346	2e-44
Q8R368	420	Dyslexia susceptibility 1	yes	N/A	0.986	0.695	0.332	3e-44
Q5VJS5	420	Dyslexia susceptibility 1	yes	N/A	0.398	0.280	0.528	1e-29
Q95LY5	577	Tetratricopeptide repeat	N/A	N/A	0.192	0.098	0.421	1e-05
Q99614	292	Tetratricopeptide repeat	no	N/A	0.189	0.191	0.360	3e-05
Q9H892	705	Tetratricopeptide repeat	no	N/A	0.192	0.080	0.403	4e-05

>sp|Q8WXU2|DYXC1_HUMAN Dyslexia susceptibility 1 candidate gene 1 protein OS=Homo sapiens GN=DYX1C1 PE=1 SV=2

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 188/350 (53%), Gaps = 57/350 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEALSG-----NYECNGNTRAPCGDEDA 140
                   A+SV MK+E +E+  + +MKE ++ +A         Y+     +     E+ 
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEK 180

Query: 141 PKVSNEKEIQNKHKAMMDK-ITRRVRAQLKAEEKR------------AALPLVRSQGLIG 187
                EK+I+ + K +  K +TR + ++  A + R             ++P  RS G I 
Sbjct: 181 L-CQKEKQIKEERKKIKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIK 239

Query: 188 VTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQ 244
           + FTPRVFPT +RES   EEEEWL KQAEAR+A     A   DL+ EE NP+W+K KG++
Sbjct: 240 INFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNK 299

Query: 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           +F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S+
Sbjct: 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSK 349

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.
Homo sapiens (taxid: 9606)

>sp|Q863A6|DYXC1_PANPA Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Pan paniscus GN=DYX1C1 PE=3 SV=1

 Score =  180 bits (457), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 187/349 (53%), Gaps = 57/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEALS-----GNYECNGNTRAPCGDEDA 140
                   A+SV MK+E +E+  + +MKE ++ +A         Y+     +     E+ 
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKKIQREEK 180

Query: 141 PKVSNEKEIQNKHKAMMDK-ITRRVRAQLKAEEKR------------AALPLVRSQGLIG 187
                EK+I+ + K +  K +TR + ++  A + R             ++P  RS G I 
Sbjct: 181 L-CQKEKQIKEERKKIKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIK 239

Query: 188 VTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQ 244
           + FTPRVFPT +RES   EEEEWL KQAEAR+A     A   DL+ EE NP+W+K KG++
Sbjct: 240 INFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNK 299

Query: 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           +F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Pan paniscus (taxid: 9597)

>sp|Q863A5|DYXC1_GORGO Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Gorilla gorilla gorilla GN=DYX1C1 PE=3 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 187/349 (53%), Gaps = 57/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTVVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEALS-----GNYECNGNTRAPCGDEDA 140
                   A+SV MK+E +E+  + +MKE ++ +A         Y+     +     E+ 
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKEIQREEK 180

Query: 141 PKVSNEKEIQNKHKAMMDK-ITRRVRAQLKAEEKR------------AALPLVRSQGLIG 187
                EK+I+ + K +  K +TR + ++  A + R             ++P  RS G I 
Sbjct: 181 L-CQKEKQIKEERKKLKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIK 239

Query: 188 VTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQ 244
           + FTPRVFPT +RES   EEEEWL KQAEAR+A     A   DL+ EE NP+W+K KG++
Sbjct: 240 INFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNK 299

Query: 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           +F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q863A4|DYXC1_PONPY Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Pongo pygmaeus GN=DYX1C1 PE=3 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 181/349 (51%), Gaps = 57/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKETMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEALS-----GNYECNGNTRAPCGDEDA 140
                   A+SV MK+E +E+  + +MKE ++ +A         Y+           E+ 
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEHKKIQREEK 180

Query: 141 PKVSNEKEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIG 187
                EK+I+ + K +  K   R  A                 + K  ++P  RS G I 
Sbjct: 181 L-CQKEKQIKEERKKLKYKSLTRNSASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIK 239

Query: 188 VTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQ 244
           + FTPRVFPT +RES   EEEEWL KQAEAR+A     A   DL+ EE NP+W+K KG++
Sbjct: 240 INFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNK 299

Query: 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           +F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Pongo pygmaeus (taxid: 9600)

>sp|Q863A7|DYXC1_PANTR Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Pan troglodytes GN=DYX1C1 PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 186/349 (53%), Gaps = 57/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF  E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCMENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEALS-----GNYECNGNTRAPCGDEDA 140
                   A+SV MK+E +E+  + +MKE ++ +A         Y+     +     E+ 
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKKIQREEK 180

Query: 141 PKVSNEKEIQNKHKAMMDK-ITRRVRAQLKAEEKR------------AALPLVRSQGLIG 187
                EK+I+ + K +  K +TR + ++  A + R             ++P  RS G I 
Sbjct: 181 L-CQKEKQIKEERKKIKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIK 239

Query: 188 VTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQ 244
           + FTPRVFPT +RES   EEEEWL KQAEAR+A     A   DL+ EE NP+W+K KG++
Sbjct: 240 INFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNK 299

Query: 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           +F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Pan troglodytes (taxid: 9598)

>sp|Q8R368|DYXC1_MOUSE Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Mus musculus GN=Dyx1c1 PE=2 SV=2

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 170/349 (48%), Gaps = 57/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V E  W+QTP+ +F+++PL  V     DVF  ESY+K+++  ++FE  L  PI + 
Sbjct: 1   MPVRVSEFSWQQTPATIFLSLPLRGVCVRDADVFCGESYLKVNFPPFLFELFLYAPIDDG 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWD--------EKKDKRSKEAVSVQMKLETQEQTDVSNM 112
            S+ ++ N+   F L K E  +WD        ++  +R +E   +Q + + +E T+   +
Sbjct: 61  KSKAKIGNDTILFTLYKKEPVLWDSLSVPGVDKEMMQRIREKSILQAQEKAKEATEAKAV 120

Query: 113 KERQKWEALSG------------------NYECNGNTRAPCGDEDAPKVSNEKEIQNKHK 154
            +R+      G                  N      +      E   K   +K +Q K K
Sbjct: 121 AKREDQRYALGEMMKIEEEERKKIEDMKENERKKATSELEAWKECQKKADGQKRVQRKEK 180

Query: 155 AMMDKITRRVRAQLKAEEKRAA------------------------LPLVRSQGLIGVTF 190
            +  K     +A       R A                        +P  RS G I ++F
Sbjct: 181 PLEGKQAEETKALKPRGLPRKAPPTRLPTRGRNWENIFPEKLKEDRVPAPRSAGSIQISF 240

Query: 191 TPRVFPTPMRESTAPEEEEWLQKQAEARQACG-----FIAADLRPEENNPDWVKAKGDQM 245
           TPRVFPT +RES   EEEEWL KQAEAR+A       F   DL+ EE NPDW+K KG+++
Sbjct: 241 TPRVFPTALRESQVAEEEEWLHKQAEARRAMSTDLPEFF--DLKEEERNPDWLKDKGNKL 298

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           F   NYL AV AY+  ++L   +  LY NRAA HL L NLHKA++D+S+
Sbjct: 299 FATENYLAAVDAYNLAIRLNCKIPLLYLNRAACHLKLKNLHKAIEDSSK 347

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Mus musculus (taxid: 10090)

>sp|Q5VJS5|DYXC1_RAT Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Rattus norvegicus GN=Dyx1c1 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 177 LPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEEN 233
           +P  RS G I ++FTPRVFPT +RES   EEEEWL KQAEAR+A        +DL+ EE 
Sbjct: 227 VPAPRSAGSIQISFTPRVFPTALRESQVAEEEEWLHKQAEARRAMSTDLPEFSDLKEEEK 286

Query: 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           NPDW+K KG+++F   NYL A+ AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 287 NPDWLKDKGNKLFATENYLAAIDAYNLAIRLNRKIPVLYLNRAACHLKLKNLHKAIEDSS 346

Query: 294 E 294
           +
Sbjct: 347 K 347

Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.

Rattus norvegicus (taxid: 10116)

>sp|Q95LY5|TTC12_MACFA Tetratricopeptide repeat protein 12 (Fragment) OS=Macaca fascicularis GN=TTC12 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
           D +K KG++ F +GNY  A+  YS GL+   ++  LY+NRA A++ L N  KA+ D 
Sbjct: 107 DALKDKGNEAFAEGNYETAILHYSEGLEKLKDVKVLYTNRAQAYMKLKNYEKALVDC 163

Macaca fascicularis (taxid: 9541)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-----ACLYSNRAAAHLALNNLHKAVDDA 292
           +K +G++ F+ G+Y+ A S+YS  L++CP+      + L+SNRAAA +  +    A++D 
Sbjct: 119 LKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDC 178

Query: 293 S 293
           S
Sbjct: 179 S 179

Homo sapiens (taxid: 9606)

>sp|Q9H892|TTC12_HUMAN Tetratricopeptide repeat protein 12 OS=Homo sapiens GN=TTC12 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
            D +K KG++ F +GNY  A+  YS GL+   ++  LY+NRA A++ L +  KA+ D
Sbjct: 106 ADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVD 162

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
242019599	416	heat shock protein 70 HSP70, putative [P	0.979	0.697	0.395	7e-56
45387793	420	dyslexia susceptibility 1 candidate 1 [D	0.989	0.697	0.343	7e-47
91092102	381	PREDICTED: similar to dyslexia susceptib	0.976	0.758	0.394	1e-46
57108535	420	PREDICTED: dyslexia susceptibility 1 can	0.983	0.692	0.36	3e-44
410961185	376	PREDICTED: dyslexia susceptibility 1 can	0.993	0.781	0.346	7e-44
410961187	420	PREDICTED: dyslexia susceptibility 1 can	0.989	0.697	0.347	8e-44
355692736	418	Dyslexia susceptibility 1 candidate gene	0.989	0.700	0.347	1e-43
355778064	420	Dyslexia susceptibility 1 candidate gene	0.989	0.697	0.347	1e-43
354465216	374	PREDICTED: dyslexia susceptibility 1 can	0.996	0.788	0.353	2e-43
301775146	420	PREDICTED: dyslexia susceptibility 1 can	0.989	0.697	0.347	2e-43

>gi|242019599|ref|XP_002430247.1| heat shock protein 70 HSP70, putative [Pediculus humanus corporis] gi|212515354|gb|EEB17509.1| heat shock protein 70 HSP70, putative [Pediculus humanus corporis]

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 181/349 (51%), Gaps = 59/349 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+IVK+  W+QT   + I VPL  V +  VD+FTS++Y+K  Y  ++FE  L   I E+
Sbjct: 1   MPLIVKDFVWKQTEELLTIRVPLKGVSSSSVDIFTSDNYVKASYSPFLFEVFLFSNINEK 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWD--------------------------EKKDKRSKEA 94
            S+  + +NE  FEL K    MW+                          E+  K  KE 
Sbjct: 61  TSKCTISDNEIIFELYKIIPKMWENLTADISKLEMLQKRKEIIEKSHVKTEEDRKLKKEK 120

Query: 95  VSVQMKLETQEQTDVSN-----------------MKERQKWEALSGNYECNGNTRAPC-G 136
           +S   +L  Q+Q D  +                 M E   W   +   E N     PC G
Sbjct: 121 LSALQRLSVQQQIDQDSKMRQVIDDKRNAARAKAMNELDDWVINNKIEEIN----KPCKG 176

Query: 137 DEDAPKV-SNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAL----------PLVRSQGL 185
             D  KV  NE +   +     D I ++V   +K E K   L          PL R+ G 
Sbjct: 177 PLDLDKVIFNETDAGVEIDVEDDSIQKKVVEPIKNEMKSTNLKSKSIDVFPMPLPRNPGT 236

Query: 186 IGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQM 245
           I + FT R FPTP RES AP+EEEWL+KQ EAR+A GF+A DLRPEE NP W+K KGD  
Sbjct: 237 ITINFTHRDFPTPSRESQAPQEEEWLKKQVEARRATGFVAEDLRPEECNPTWLKDKGDSF 296

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           ++ GNYLGAVSAYSH ++L   ++ LY+NR AAHL L NLHKA+DD S+
Sbjct: 297 YKVGNYLGAVSAYSHAIKLGSKMSSLYANRGAAHLGLGNLHKALDDCSQ 345

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45387793|ref|NP_991251.1| dyslexia susceptibility 1 candidate 1 [Danio rerio] gi|40747988|gb|AAR89528.1| EKN1 [Danio rerio] gi|41389020|gb|AAH65881.1| Zgc:77853 [Danio rerio] gi|182889942|gb|AAI65842.1| Zgc:77853 [Danio rerio]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 179/346 (51%), Gaps = 53/346 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+IV++  W Q  S V+I+VPL  V T  V +  ++ Y+K+ +  ++FE  L   I EE
Sbjct: 1   MPLIVRDHTWTQNLSTVYISVPLKAVKTANVHIICTDDYLKVSFPPFLFEVFLFASINEE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWDE---------KKDKRSKEAVSVQMKLETQEQTDVSN 111
            S  R+ N  A F L K    MW++         +K  R +  + VQ K   + +T  + 
Sbjct: 61  KSEARIGNGAAVFTLQKRRDEMWEQLCTNIDKEKQKQIREQAVLKVQEKAVEKSKTKATR 120

Query: 112 MKERQKWEALSGNYECNGNTRAPC---GDEDAPKVS----------------NEKEIQNK 152
           +++ +K+ AL    +     R       DE   + +                NE +I+ +
Sbjct: 121 IQQEKKY-ALETMMKLESEERERIQKRKDEVCARATAELDFWRETQRKTAKGNENQIKEQ 179

Query: 153 HKAMMD---------------------KITRRVRAQLKAEEKRAALPLVRSQGLIGVTFT 191
             +  D                     K    +  Q+++++K   LP  RS G I ++FT
Sbjct: 180 RTSTHDNKPVPQKIKHANTSPADTALVKTDNTITGQMRSKQKTKDLPAPRSAGCIQISFT 239

Query: 192 PRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQMFRD 248
           PRVFPT +RES  PEEEEWL+KQAEAR+A     A   DL  +E NPDW+K KGD++F  
Sbjct: 240 PRVFPTALRESRVPEEEEWLKKQAEARRAIDTDLAELDDLTEDERNPDWLKDKGDKLFMA 299

Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           GN+L AV+AY+  ++L   +  L+SNRAA HL L NLHKA++D+S+
Sbjct: 300 GNFLAAVNAYNLAIKLNRKMPALFSNRAACHLKLRNLHKAIEDSSQ 345

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91092102|ref|XP_971936.1| PREDICTED: similar to dyslexia susceptibility 1 candidate 1 [Tribolium castaneum] gi|270004706|gb|EFA01154.1| hypothetical protein TcasGA2_TC010379 [Tribolium castaneum]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 168/317 (52%), Gaps = 28/317 (8%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MPII+K+  W QT + V I VPL  +   KVD+F S+ YIK  +  Y FE  L + I  +
Sbjct: 1   MPIIIKDIEWSQTDNTVTIKVPLRGIHHSKVDIFYSKLYIKASFEQYFFEVFLYKQIDPK 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWDE--------KKDKRSKEAVSVQMKLETQEQTDVSNM 112
            S     +    FELIK E   W+         +K +  K  +  + K   +EQT+  N 
Sbjct: 61  TSSCTFTSTHILFELIKCEATTWENLELDIPKAEKQQLKKTYIEEEHKRIQEEQTERLNK 120

Query: 113 KERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRV--RAQLKA 170
           K   K  A+      + + R     E+  K  +EKE   K   +M +  R+   + ++K+
Sbjct: 121 KSELKRLAVREQMALDADLREKI--ENIKK--DEKENALKEFEIMPQTGRKTTDKTKIKS 176

Query: 171 EEKRAA--------------LPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAE 216
            +K+                LP  RS   I V+FTPR FPTP RES   EE EWL+KQAE
Sbjct: 177 SQKKKVRPPASPAPPPKPQVLPPPRSSQTITVSFTPREFPTPCRESRLEEENEWLRKQAE 236

Query: 217 ARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRA 276
           AR++ GFI+ DLRPEE+NP ++K+KGD+  R  NYLGAVSAYS G+ L    A LY  RA
Sbjct: 237 ARRSVGFISEDLRPEEHNPQFLKSKGDEFLRSRNYLGAVSAYSFGITLNDKFADLYVGRA 296

Query: 277 AAHLALNNLHKAVDDAS 293
            AH AL N +K V D S
Sbjct: 297 EAHFALGNYNKVVKDCS 313

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57108535|ref|XP_544692.1| PREDICTED: dyslexia susceptibility 1 candidate gene 1 protein homolog isoform 1 [Canis lupus familiaris]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 188/350 (53%), Gaps = 59/350 (16%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP++V +  W+QT + VFI+VPL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLLVSDYNWQQTKTAVFISVPLRGVCVRDADVFCTENYLKVNFSPFLFEVFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWDE--------------------KKDKRSKE------- 93
            S+ ++ N+   F L K E AMW+                     +  KR+KE       
Sbjct: 61  NSKAKIGNDTIVFTLYKKEAAMWETLSVSGVDKEMMQRIREKSILQAQKRAKEATEAKAT 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNT-------RAPC 135
                   A++V MK+E +E+  + +MKE+++ +A   L    EC           R   
Sbjct: 121 ARREDQKYALNVMMKIEEEERKKIEDMKEKERIKATKELEAWKECQRKAEEQKRIQRDEK 180

Query: 136 GDEDAPKVSNEKEIQNKHKAMMDKI--TRRVRAQLKAEE-------KRAALPLVRSQGLI 186
             E   K+  E+  + KHK++  KI  +R +  + +  E       K  ++P  RS G I
Sbjct: 181 FCEQGKKIEEERN-KLKHKSLT-KISESRNLATKGRNSENIFLEKLKEDSIPAPRSIGSI 238

Query: 187 GVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGD 243
            + FTPRVFPT +RES   EEEEWL KQAEAR+A         DL+ EE NP+W+K KG+
Sbjct: 239 KINFTPRVFPTALRESQVAEEEEWLHKQAEARRALNTDIPELFDLKEEEKNPEWLKDKGN 298

Query: 244 QMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           ++F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 299 KLFATENYLAAINAYNLAIRLNNKIPLLYLNRAACHLKLKNLHKAIEDSS 348

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410961185|ref|XP_003987164.1| PREDICTED: dyslexia susceptibility 1 candidate gene 1 protein homolog isoform 1 [Felis catus]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 183/349 (52%), Gaps = 55/349 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VFI+VPL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYTWQQTKTSVFISVPLRGVSVRDADVFCTENYLKVNFPPFLFEVFLCAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
            S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  NSKAKIGNDTIIFTLYKKEVAMWETLSLSGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                   A++V M++E +E+  + +MKE ++ +A   L    EC              K
Sbjct: 121 ARREDQKYALNVMMQIEEEERKKIEDMKENERMKATKELEAWKECQRKAEEQKRIHREEK 180

Query: 143 V-SNEKEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIGV 188
               EK+I+++ K +  K   R+ A                 + K  ++P  RS G I +
Sbjct: 181 FCEQEKQIEDERKQLKHKSHTRISASRNLATKGRNSENIFLEKLKENSIPAPRSVGSIKI 240

Query: 189 TFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQM 245
            FTPRVFPT +RES   EEEEWL KQAEAR+A        +DL+ EE NP+W+K KG+++
Sbjct: 241 NFTPRVFPTALRESQVAEEEEWLHKQAEARRALNTDIPELSDLKEEEKNPEWLKDKGNKL 300

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S+
Sbjct: 301 FATENYLAAINAYNLAIRLNNKIPLLYLNRAACHLKLKNLHKAIEDSSK 349

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410961187|ref|XP_003987165.1| PREDICTED: dyslexia susceptibility 1 candidate gene 1 protein homolog isoform 2 [Felis catus]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 182/348 (52%), Gaps = 55/348 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VFI+VPL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYTWQQTKTSVFISVPLRGVSVRDADVFCTENYLKVNFPPFLFEVFLCAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
            S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  NSKAKIGNDTIIFTLYKKEVAMWETLSLSGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                   A++V M++E +E+  + +MKE ++ +A   L    EC              K
Sbjct: 121 ARREDQKYALNVMMQIEEEERKKIEDMKENERMKATKELEAWKECQRKAEEQKRIHREEK 180

Query: 143 V-SNEKEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIGV 188
               EK+I+++ K +  K   R+ A                 + K  ++P  RS G I +
Sbjct: 181 FCEQEKQIEDERKQLKHKSHTRISASRNLATKGRNSENIFLEKLKENSIPAPRSVGSIKI 240

Query: 189 TFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQM 245
            FTPRVFPT +RES   EEEEWL KQAEAR+A        +DL+ EE NP+W+K KG+++
Sbjct: 241 NFTPRVFPTALRESQVAEEEEWLHKQAEARRALNTDIPELSDLKEEEKNPEWLKDKGNKL 300

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 301 FATENYLAAINAYNLAIRLNNKIPLLYLNRAACHLKLKNLHKAIEDSS 348

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355692736|gb|EHH27339.1| Dyslexia susceptibility 1 candidate gene 1 protein, partial [Macaca mulatta]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 183/348 (52%), Gaps = 55/348 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                   A+SV MK+E +E+  + +MKE ++ +A   L    EC          +   K
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKECQRKAEEQKKIQKEEK 180

Query: 143 V-SNEKEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIGV 188
           +   EK+I+ + K +  K + R  A                 + K  ++P  RS G I +
Sbjct: 181 LCQKEKQIKEERKKLKYKTSTRNSASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIKI 240

Query: 189 TFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQM 245
            FTPRVFPT +RES   EEEEWL KQAEAR+A         DL+ EE NP+W+K KG+++
Sbjct: 241 NFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIPELCDLKEEEKNPEWLKDKGNKL 300

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 301 FATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355778064|gb|EHH63100.1| Dyslexia susceptibility 1 candidate gene 1 protein [Macaca fascicularis]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 183/348 (52%), Gaps = 55/348 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VF+++PL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
           +S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  SSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                   A+SV MK+E +E+  + +MKE ++ +A   L    EC          +   K
Sbjct: 121 AKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKECQRKAEEQKKIQKEEK 180

Query: 143 V-SNEKEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIGV 188
           +   EK+I+ + K +  K + R  A                 + K  ++P  RS G I +
Sbjct: 181 LCQKEKQIKEERKKLKYKTSTRNSASRNLAPKGRNSENIFTEKLKEDSIPAPRSVGSIKI 240

Query: 189 TFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQM 245
            FTPRVFPT +RES   EEEEWL KQAEAR+A         DL+ EE NP+W+K KG+++
Sbjct: 241 NFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIPELCDLKEEEKNPEWLKDKGNKL 300

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 301 FATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSS 348

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354465216|ref|XP_003495076.1| PREDICTED: dyslexia susceptibility 1 candidate gene 1 protein homolog isoform 2 [Cricetulus griseus]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 177/348 (50%), Gaps = 53/348 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V E  W+QTP+ VF+++PL  V     DVF  ESY+K+++  ++FE  L  PI + 
Sbjct: 1   MPVRVSEFSWQQTPAAVFLSLPLRGVCVRDADVFCGESYLKVNFSPFLFEVFLYAPIDDG 60

Query: 61  ASRIRLENNEAEFELIKSEQAMWD-----------------------EKKDKRSKEAVS- 96
            S+ ++ N+   F L K E  MW+                       ++K K + EA S 
Sbjct: 61  NSKAKIGNDMILFTLYKKEPVMWETLSMPDIDKEMMQRIREKSILQAQEKAKEATEAKSA 120

Query: 97  -----------VQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                      V MK+E +E+  + +MKE ++ +A   L    EC      P       K
Sbjct: 121 AKREDQRYTLGVMMKIEEEERKKIEDMKENERKKATRELEAWKECQRQAEEPKRIPRKEK 180

Query: 143 VSNEKEIQNKHKAMMDKITRRV-------RAQ-----LKAEEKRAALPLVRSQGLIGVTF 190
               K+ + K       + R+V       R +        + K  ++P  RS G I ++F
Sbjct: 181 CQRGKQAEEKGAIKPPSLPRKVPPTRLPGRGRNWENIFSEKLKEDSIPAPRSAGSIQISF 240

Query: 191 TPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQMFR 247
           TPRVFPT +RES   EEEEWL KQAEAR+A         DL+ EE NPDW+K KG+++F 
Sbjct: 241 TPRVFPTALRESQVAEEEEWLHKQAEARRAMSTDLPEFCDLKEEEKNPDWLKEKGNKLFA 300

Query: 248 DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
             NYL AV AY+  ++L   +  LY NRAA HL L NLHKA++D+S+ 
Sbjct: 301 TENYLAAVDAYNLAIRLNSKIPLLYLNRAACHLKLKNLHKAIEDSSKA 348

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301775146|ref|XP_002922989.1| PREDICTED: dyslexia susceptibility 1 candidate gene 1 protein homolog [Ailuropoda melanoleuca] gi|281353356|gb|EFB28940.1| hypothetical protein PANDA_012057 [Ailuropoda melanoleuca]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 182/348 (52%), Gaps = 55/348 (15%)

Query: 1   MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEE 60
           MP+ V +  W+QT + VFI+VPL  V     DVF +E+Y+K+++  ++FE  L  PI +E
Sbjct: 1   MPVQVSDYSWQQTKAAVFISVPLRGVCVRDADVFCTENYLKVNFSPFLFEVFLYAPIDDE 60

Query: 61  ASRIRLENNEAEFELIKSEQAMW--------DEKKDKRSKE------------------- 93
            S+ ++ N+   F L K E AMW        D++  +R +E                   
Sbjct: 61  NSKAKIGNDTIVFTLYKKEVAMWENLSVSGADKEMMQRIREKSILQAQERAKEATEAKAA 120

Query: 94  --------AVSVQMKLETQEQTDVSNMKERQKWEA---LSGNYECNGNTRAPCGDEDAPK 142
                   A++V MK+E +E+  + +MKE ++ +A   L    EC          + A K
Sbjct: 121 ARREDQKYALNVMMKIEEEERKKIEDMKENERLKATKELEAWKECQRKAEEQKRIQRAEK 180

Query: 143 VSNE-KEIQNKHKAMMDKITRRVRAQ-------------LKAEEKRAALPLVRSQGLIGV 188
              + K+I+ +   +  K   R+ A                 + K  ++P  RS G I +
Sbjct: 181 FCEQGKQIEEERNKLKHKSLTRIAASRNLATKGRNSENIFLEKLKEDSIPAPRSVGSIKI 240

Query: 189 TFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQM 245
            FTPRVFPT +RES   EEEEWL KQAEAR+A        +DL+ EE NP+W+K KG+++
Sbjct: 241 NFTPRVFPTALRESQVAEEEEWLHKQAEARRALNTDIPELSDLKEEEKNPEWLKDKGNEL 300

Query: 246 FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           F   NYL A++AY+  ++L   +  LY NRAA HL L NLHKA++D+S
Sbjct: 301 FAKENYLAAINAYNLAIRLNNKIPLLYLNRAACHLKLKNLHKAIEDSS 348

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
UNIPROTKB|E1BPX5	421	DYX1C1 "Uncharacterized protei	0.412	0.289	0.44	6e-42
ZFIN|ZDB-GENE-040426-1892	420	dyx1c1 "dyslexia susceptibilit	0.820	0.578	0.328	7.1e-29
UNIPROTKB|F1NVD5	423	DYX1C1 "Uncharacterized protei	0.739	0.517	0.350	2.4e-28
RGD|1549760	420	Dyx1c1 "dyslexia susceptibilit	0.831	0.585	0.329	3.5e-27
MGI|MGI:1914935	420	Dyx1c1 "dyslexia susceptibilit	0.793	0.559	0.333	1.5e-26
UNIPROTKB|Q863A5	420	DYX1C1 "Dyslexia susceptibilit	0.766	0.540	0.325	4.6e-25
UNIPROTKB|Q863A6	420	DYX1C1 "Dyslexia susceptibilit	0.766	0.540	0.320	8.2e-25
UNIPROTKB|Q863A7	420	DYX1C1 "Dyslexia susceptibilit	0.766	0.540	0.320	8.2e-25
UNIPROTKB|Q863A4	420	DYX1C1 "Dyslexia susceptibilit	0.766	0.540	0.320	1.4e-24
UNIPROTKB|Q8WXU2	420	DYX1C1 "Dyslexia susceptibilit	0.763	0.538	0.322	1.4e-24

UNIPROTKB|E1BPX5 DYX1C1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
 Identities = 55/125 (44%), Positives = 78/125 (62%)

Query:   173 KRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIA---ADLR 229
             K  ++P  RS G I ++FTPRVFPT +RES   EEEEWL KQAEA++A         DL+
Sbjct:   225 KEDSIPAPRSVGSIKISFTPRVFPTALRESQVAEEEEWLHKQAEAQRAMNTDIPELCDLK 284

Query:   230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAV 289
              EE NP+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           KA+
Sbjct:   285 EEEKNPEWLKEKGNKLFATENYLAAINAYNLAIRLNNKIPLLYLNRAACHLKLKNLHKAI 344

Query:   290 DDASE 294
             +D+S+
Sbjct:   345 EDSSK 349

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0030331 "estrogen receptor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1892 dyx1c1 "dyslexia susceptibility 1 candidate 1" [Danio rerio (taxid:7955)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 88/268 (32%), Positives = 139/268 (51%)

Query:    48 IFEKLLLRPIVEEASRIR----LENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLET 103
             ++E+L      E+  +IR    L+  E   E  K++     ++K    K A+   MKLE+
Sbjct:    82 MWEQLCTNIDKEKQKQIREQAVLKVQEKAVEKSKTKATRIQQEK----KYALETMMKLES 137

Query:   104 QEQTDVSNMKERQKWEALSG-NYECNGNTRAPCGDEDAPK-----VSNEKEIQNKHK--- 154
             +E+  +   K+     A +  ++      +   G+E+  K       + K +  K K   
Sbjct:   138 EERERIQKRKDEVCARATAELDFWRETQRKTAKGNENQIKEQRTSTHDNKPVPQKIKHAN 197

Query:   155 -----AMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEE 209
                    + K    +  Q+++++K   LP  RS G I ++FTPRVFPT +RES  PEEEE
Sbjct:   198 TSPADTALVKTDNTITGQMRSKQKTKDLPAPRSAGCIQISFTPRVFPTALRESRVPEEEE 257

Query:   210 WLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP 266
             WL+KQAEAR+A     A   DL  +E NPDW+K KGD++F  GN+L AV+AY+  ++L  
Sbjct:   258 WLKKQAEARRAIDTDLAELDDLTEDERNPDWLKDKGDKLFMAGNFLAAVNAYNLAIKLNR 317

Query:   267 NLACLYSNRXXXXXXXXXXXKAVDDASE 294
              +  L+SNR           KA++D+S+
Sbjct:   318 KMPALFSNRAACHLKLRNLHKAIEDSSQ 345

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NVD5 DYX1C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 80/228 (35%), Positives = 125/228 (54%)

Query:    70 EAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQKWEALSGNYECNG 129
             EA  +L ++E+   ++ K++  ++ VS +++L   +Q DV   K  QK   L    E   
Sbjct:   131 EATMKLEEAERKRIEDLKEQE-RQKVSKELELWRSQQNDVEKQKRVQKKGELHEEVELLK 189

Query:   130 NTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAALPLVRSQGLIGVT 189
               +     ++  ++ +E+  + K K    + +  + ++   EE+   LP  RS G I + 
Sbjct:   190 EKKRE--KKNKTRIPHEEISKTKLKDTKGRGSSSIFSENLKEEQ---LPAPRSAGTIKIN 244

Query:   190 FTPRVFPTPMRESTAPEEEEWLQKQAEARQACGFIAA---DLRPEENNPDWVKAKGDQMF 246
             FT RVFPT +RES   EEEEWLQKQAEAR+      +   DL+ EE NPDW+K KG++MF
Sbjct:   245 FTSRVFPTALRESRVAEEEEWLQKQAEARRTISADLSELEDLKEEEKNPDWLKDKGNKMF 304

Query:   247 RDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDASE 294
               G+YL AV+AY+  ++L   L  LY NR           KA++D+S+
Sbjct:   305 ATGDYLAAVNAYNLAVRLNNKLPLLYLNRAACHLKLRNLHKAIEDSSK 352

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030331 "estrogen receptor binding" evidence=IEA

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

RGD|1549760 Dyx1c1 "dyslexia susceptibility 1 candidate 1" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 88/267 (32%), Positives = 142/267 (53%)

Query:    48 IFEKLLLRPIVEEA-SRIRLENN-EAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQE 105
             ++E L +  + +E   RIR ++  +A+ +  ++ +A    K++ + + A+   MK+E +E
Sbjct:    82 LWESLSMPGVDKEMMQRIREKSILQAQEKAKEATEAKAAAKREDQ-RYALGEMMKIEEEE 140

Query:   106 QTDVSNMKERQKWEA---LSGNYEC----NGNTRA-----PCGDEDAPKVSNEKEIQNKH 153
             +  + +MKE ++ +A   L    EC    +G  R      P   + A +    K      
Sbjct:   141 RKKIEDMKENERKKATRELEAWKECQKKADGQKRVQRKEKPLQGKQAEERGALKPQSLPR 200

Query:   154 KAMMDKITRRVR--AQLKAEE-KRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEW 210
             KA   ++  R R    + +E+ K   +P  RS G I ++FTPRVFPT +RES   EEEEW
Sbjct:   201 KAPPTRLPTRGRNWENIFSEKLKEDRVPAPRSAGSIQISFTPRVFPTALRESQVAEEEEW 260

Query:   211 LQKQAEARQACGFIA---ADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267
             L KQAEAR+A        +DL+ EE NPDW+K KG+++F   NYL A+ AY+  ++L   
Sbjct:   261 LHKQAEARRAMSTDLPEFSDLKEEEKNPDWLKDKGNKLFATENYLAAIDAYNLAIRLNRK 320

Query:   268 LACLYSNRXXXXXXXXXXXKAVDDASE 294
             +  LY NR           KA++D+S+
Sbjct:   321 IPVLYLNRAACHLKLKNLHKAIEDSSK 347

GO:0001764 "neuron migration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0030331 "estrogen receptor binding" evidence=ISO;IDA

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISO;ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO;ISS

MGI|MGI:1914935 Dyx1c1 "dyslexia susceptibility 1 candidate 1 homolog (human)" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 85/255 (33%), Positives = 136/255 (53%)

Query:    59 EEASRIRLENN-EAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQK 117
             E   RIR ++  +A+ +  ++ +A    K++ + + A+   MK+E +E+  + +MKE ++
Sbjct:    94 EMMQRIREKSILQAQEKAKEATEAKAVAKREDQ-RYALGEMMKIEEEERKKIEDMKENER 152

Query:   118 WEA---LSGNYEC----NGNTRAPCGDE--DAPKVSNEKEIQNK---HKAMMDKITRRVR 165
              +A   L    EC    +G  R    ++  +  +    K ++ +    KA   ++  R R
Sbjct:   153 KKATSELEAWKECQKKADGQKRVQRKEKPLEGKQAEETKALKPRGLPRKAPPTRLPTRGR 212

Query:   166 --AQLKAEE-KRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACG 222
                 +  E+ K   +P  RS G I ++FTPRVFPT +RES   EEEEWL KQAEAR+A  
Sbjct:   213 NWENIFPEKLKEDRVPAPRSAGSIQISFTPRVFPTALRESQVAEEEEWLHKQAEARRAMS 272

Query:   223 FIAA---DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXX 279
                    DL+ EE NPDW+K KG+++F   NYL AV AY+  ++L   +  LY NR    
Sbjct:   273 TDLPEFFDLKEEERNPDWLKDKGNKLFATENYLAAVDAYNLAIRLNCKIPLLYLNRAACH 332

Query:   280 XXXXXXXKAVDDASE 294
                    KA++D+S+
Sbjct:   333 LKLKNLHKAIEDSSK 347

GO:0001764 "neuron migration" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0030331 "estrogen receptor binding" evidence=ISO

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

UNIPROTKB|Q863A5 DYX1C1 "Dyslexia susceptibility 1 candidate gene 1 protein homolog" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 78/240 (32%), Positives = 119/240 (49%)

Query:    60 EASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLET--QEQTDVSNMKERQK 117
             +A+  R +   A   ++K E+    + +D +  E +    +LE   + Q      KE Q+
Sbjct:   118 KAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKEIQR 177

Query:   118 WEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAL 177
              E L     C    +     E+  K+  +   +N     +    R        + K  ++
Sbjct:   178 EEKL-----CQKEKQIK---EERKKLKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSI 229

Query:   178 PLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGF-IA--ADLRPEENN 234
             P  RS G I + FTPRVFPT +RES   EEEEWL KQAEAR+A    IA   DL+ EE N
Sbjct:   230 PAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKN 289

Query:   235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDASE 294
             P+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           KA++D+S+
Sbjct:   290 PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSK 349

GO:0001764 "neuron migration" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

UNIPROTKB|Q863A6 DYX1C1 "Dyslexia susceptibility 1 candidate gene 1 protein homolog" [Pan paniscus (taxid:9597)]

 Score = 283 (104.7 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 77/240 (32%), Positives = 119/240 (49%)

Query:    60 EASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLET--QEQTDVSNMKERQK 117
             +A+  R +   A   ++K E+    + +D +  E +    +LE   + Q      K+ Q+
Sbjct:   118 KAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKKIQR 177

Query:   118 WEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAL 177
              E L     C    +     E+  K+  +   +N     +    R        + K  ++
Sbjct:   178 EEKL-----CQKEKQIK---EERKKIKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSI 229

Query:   178 PLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGF-IA--ADLRPEENN 234
             P  RS G I + FTPRVFPT +RES   EEEEWL KQAEAR+A    IA   DL+ EE N
Sbjct:   230 PAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKN 289

Query:   235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDASE 294
             P+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           KA++D+S+
Sbjct:   290 PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSK 349

GO:0001764 "neuron migration" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

UNIPROTKB|Q863A7 DYX1C1 "Dyslexia susceptibility 1 candidate gene 1 protein homolog" [Pan troglodytes (taxid:9598)]

 Score = 283 (104.7 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 77/240 (32%), Positives = 119/240 (49%)

Query:    60 EASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLET--QEQTDVSNMKERQK 117
             +A+  R +   A   ++K E+    + +D +  E +    +LE   + Q      K+ Q+
Sbjct:   118 KAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEQKKIQR 177

Query:   118 WEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAL 177
              E L     C    +     E+  K+  +   +N     +    R        + K  ++
Sbjct:   178 EEKL-----CQKEKQIK---EERKKIKYKSLTRNLASRNLAPKGRNSENIFTEKLKEDSI 229

Query:   178 PLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGF-IA--ADLRPEENN 234
             P  RS G I + FTPRVFPT +RES   EEEEWL KQAEAR+A    IA   DL+ EE N
Sbjct:   230 PAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKN 289

Query:   235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDASE 294
             P+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           KA++D+S+
Sbjct:   290 PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSK 349

GO:0001764 "neuron migration" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

UNIPROTKB|Q863A4 DYX1C1 "Dyslexia susceptibility 1 candidate gene 1 protein homolog" [Pongo pygmaeus (taxid:9600)]

 Score = 281 (104.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 77/240 (32%), Positives = 119/240 (49%)

Query:    60 EASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLET--QEQTDVSNMKERQK 117
             +A+  R +   A   ++K E+    + +D +  E +    +LE   + Q      K+ Q+
Sbjct:   118 KAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKELEAWKEYQRKAEEHKKIQR 177

Query:   118 WEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEKRAAL 177
              E L     C    +     E+  K+  +   +N     +    R        + K  ++
Sbjct:   178 EEKL-----CQKEKQIK---EERKKLKYKSLTRNSASRNLAPKGRNSENIFTEKLKEDSI 229

Query:   178 PLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGF-IA--ADLRPEENN 234
             P  RS G I + FTPRVFPT +RES   EEEEWL KQAEAR+A    IA   DL+ EE N
Sbjct:   230 PAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEKN 289

Query:   235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDASE 294
             P+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           KA++D+S+
Sbjct:   290 PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSK 349

GO:0001764 "neuron migration" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

UNIPROTKB|Q8WXU2 DYX1C1 "Dyslexia susceptibility 1 candidate gene 1 protein" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 80/248 (32%), Positives = 132/248 (53%)

Query:    66 LENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQK-WEALSG- 123
             L+  E   E  +++ A   +++D++   +V ++++ E +++ +     ER K  +AL   
Sbjct:   105 LQAQERAKEATEAKAAA--KREDQKYALSVMMKIEEEERKKIEDMKENERIKATKALEAW 162

Query:   124 -NYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDK-ITRRVRAQLKAEE--------- 172
               Y+     +     E+      EK+I+ + K +  K +TR + ++  A +         
Sbjct:   163 KEYQRKAEEQKKIQREEK-LCQKEKQIKEERKKIKYKSLTRNLASRNLAPKGRNSENIFT 221

Query:   173 ---KRAALPLVRSQGLIGVTFTPRVFPTPMRESTAPEEEEWLQKQAEARQACGF-IA--A 226
                K  ++P  RS G I + FTPRVFPT +RES   EEEEWL KQAEAR+A    IA   
Sbjct:   222 EKLKEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAELC 281

Query:   227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXX 286
             DL+ EE NP+W+K KG+++F   NYL A++AY+  ++L   +  LY NR           
Sbjct:   282 DLKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLH 341

Query:   287 KAVDDASE 294
             KA++D+S+
Sbjct:   342 KAIEDSSK 349

GO:0005515 "protein binding" evidence=IPI

GO:0033146 "regulation of intracellular estrogen receptor signaling pathway" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IDA

GO:0001764 "neuron migration" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R368	DYXC1_MOUSE	No assigned EC number	0.3323	0.9864	0.6952	yes	N/A
Q863A7	DYXC1_PANTR	No assigned EC number	0.3467	0.9864	0.6952	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	296
cd06469	78	cd06469, p23_DYX1C1_like, p23_like domain found in	2e-19
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	8e-10
pfam04969	78	pfam04969, CS, CS domain	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-07
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	0.001
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	0.004

>gnl|CDD|107226 cd06469, p23_DYX1C1_like, p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 31/76 (40%), Positives = 45/76 (59%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENN 69
          W QT   V I+VPL  V T KVD+F S+ Y+K+++  Y+FE  L  PI +E S  ++ N 
Sbjct: 1  WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNG 60

Query: 70 EAEFELIKSEQAMWDE 85
             F L+K E  +W+ 
Sbjct: 61 VLVFTLVKKEPGIWEA 76

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region. Length = 78

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRI 64
          W QT  +V IT+PL +V    V V  +   + +         Y+ E  L  PI  E S+ 
Sbjct: 1  WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60

Query: 65 RLENNEAEFELIKSEQAMW 83
           +E+ + E  L K E   W
Sbjct: 61 TVEDRKIEITLKKKEPGEW 79

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 9  CWRQTPSKVFITVPLYNVPTHK-VDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEAS 62
           W QT  +V IT+PL  V   K V V      +K+         Y+ +  L  PI  E S
Sbjct: 4  DWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEES 63

Query: 63 RIRLENNEAEFELIK 77
            ++E+ + E  L K
Sbjct: 64 SWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK-AVDD 291
           +N + +K  G+ +F+ G+Y  A+ AY   L+L P+ A  Y N A A+L L   ++ A++D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 292 AS 293
             
Sbjct: 61  LE 62

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
            K  + F D ++  AV  Y+  + L PN A LY++RA A++ L N  +AV DA+
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
              G+  ++ G+Y  A+  Y   L+L P+ A  Y N AAA+  L    +A++D  + 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Length = 100

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDV-FTSES-YIKLHYGN---YIFEKLLLRPIVEEASRI 64
          W QT + V +T+   NV    V V F  +S  + +       Y  E  L  PI  E S++
Sbjct: 2  WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKV 61

Query: 65 RLENNEAEFELIKSEQAMW 83
           +   + E  L K+E   W
Sbjct: 62 SVLPTKVEITLKKAEPGSW 80

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           +K KG++ +R+ ++  A+  YS  ++  P+    YSNRAA H AL +  K V+D +
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTT 184

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLH------------YGNYIFEKLLLRPI 57
          W QT  +V +TV L  V    + V   ++ + +             YG +     L   +
Sbjct: 1  WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 58 VEEASRIRLENNEAEFELIK 77
            E S+  LEN   E  L K
Sbjct: 61 DPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG2265|consensus	179		99.79
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.77
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.76
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.76
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.74
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.73
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.73
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.71
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.71
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.69
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.68
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.67
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.63
cd06463	84	p23_like Proteins containing this p23_like domain	99.61
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.61
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.45
KOG0553|consensus	304		99.43
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.42
KOG1309|consensus	196		99.4
KOG0551|consensus	390		99.37
KOG0547|consensus	606		99.28
KOG0548|consensus	539		99.26
KOG4234|consensus	271		99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.18
KOG4648|consensus	536		99.12
KOG3158|consensus	180		99.08
KOG1667|consensus	320		99.0
cd00298	80	ACD_sHsps_p23-like This domain family includes the	98.97
KOG4642|consensus	284		98.93
KOG0548|consensus	539		98.93
KOG3260|consensus	224		98.83
KOG0550|consensus	486		98.77
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.57
KOG0376|consensus	476		98.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.55
KOG4379|consensus	596		98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.51
PRK15359	144	type III secretion system chaperone protein SscB;	98.45
PF13371	73	TPR_9: Tetratricopeptide repeat	98.45
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.4
KOG0543|consensus	397		98.4
KOG0550|consensus	486		98.27
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.23
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.22
PRK15359	144	type III secretion system chaperone protein SscB;	98.17
KOG4555|consensus	175		98.16
KOG0545|consensus	329		98.14
PRK11189	296	lipoprotein NlpI; Provisional	98.12
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	98.04
KOG1308|consensus	377		97.98
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.97
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.94
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	97.93
PF13431	34	TPR_17: Tetratricopeptide repeat	97.92
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.87
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.83
PRK11189	296	lipoprotein NlpI; Provisional	97.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.76
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.75
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.67
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.66
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.59
KOG0624|consensus	504		97.58
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	97.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.48
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.46
PRK12370	553	invasion protein regulator; Provisional	97.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.44
KOG4626|consensus	966		97.4
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.38
KOG0553|consensus	304		97.36
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.36
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	97.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.35
KOG4234|consensus	271		97.33
KOG0624|consensus	504		97.33
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	97.33
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	97.31
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.3
PRK10743	137	heat shock protein IbpA; Provisional	97.21
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	97.2
PF13428	44	TPR_14: Tetratricopeptide repeat	97.18
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	97.15
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	97.15
KOG0543|consensus	397		97.14
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.13
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.11
KOG4626|consensus	966		97.08
KOG1310|consensus	758		97.05
PRK11597	142	heat shock chaperone IbpB; Provisional	96.98
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	96.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.9
KOG1125|consensus	579		96.83
PRK15331	165	chaperone protein SicA; Provisional	96.81
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	96.81
PF13512	142	TPR_18: Tetratricopeptide repeat	96.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.81
KOG1173|consensus	611		96.76
PRK15331	165	chaperone protein SicA; Provisional	96.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.72
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.59
KOG4648|consensus	536		96.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.58
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.53
KOG0547|consensus	606		96.51
PRK12370	553	invasion protein regulator; Provisional	96.47
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	96.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.36
PRK10803	263	tol-pal system protein YbgF; Provisional	96.34
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.32
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.32
KOG4340|consensus	459		96.31
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.3
PRK10803	263	tol-pal system protein YbgF; Provisional	96.24
PLN02789	320	farnesyltranstransferase	96.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.07
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	95.98
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	95.96
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.95
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.9
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.85
PF13371	73	TPR_9: Tetratricopeptide repeat	95.82
KOG2003|consensus	840		95.75
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.69
PLN02789	320	farnesyltranstransferase	95.68
KOG0376|consensus	476		95.58
PF13512	142	TPR_18: Tetratricopeptide repeat	95.54
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.53
KOG0551|consensus	390		95.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.5
KOG1126|consensus	638		95.49
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.45
PF12688	120	TPR_5: Tetratrico peptide repeat	95.44
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.39
KOG1125|consensus	579		95.36
KOG2076|consensus	895		95.36
KOG1126|consensus	638		95.33
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.29
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.1
KOG3785|consensus	557		95.06
KOG2796|consensus	366		94.95
PRK14574	822	hmsH outer membrane protein; Provisional	94.92
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.9
KOG1128|consensus	777		94.9
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.68
KOG1840|consensus	508		94.58
KOG1155|consensus	559		94.44
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	94.41
PRK10941	269	hypothetical protein; Provisional	94.36
KOG2076|consensus	895		94.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.29
KOG2002|consensus	1018		94.25
KOG0545|consensus	329		94.25
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.11
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.95
KOG4555|consensus	175		93.76
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.75
KOG4151|consensus	748		93.74
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.64
PRK14574	822	hmsH outer membrane protein; Provisional	93.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.59
PF12688	120	TPR_5: Tetratrico peptide repeat	93.54
KOG1128|consensus	777		93.49
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.48
KOG1174|consensus	564		93.44
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.35
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	93.31
KOG1308|consensus	377		93.22
KOG4814|consensus	872		93.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.03
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	92.96
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	92.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.47
PRK11906	458	transcriptional regulator; Provisional	92.4
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	92.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	91.87
KOG1130|consensus	639		91.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.58
KOG2002|consensus	1018		91.38
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.31
KOG1155|consensus	559		91.17
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.94
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	90.81
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.72
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.7
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.66
KOG1130|consensus	639		90.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.11
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.81
KOG3785|consensus	557		89.65
KOG1129|consensus	478		89.59
KOG2003|consensus	840		89.55
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	88.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.29
KOG1840|consensus	508		88.09
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	88.08
KOG4642|consensus	284		88.04
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.85
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	87.54
COG2912	269	Uncharacterized conserved protein [Function unknow	87.52
KOG3247|consensus	466		87.31
KOG2376|consensus	652		87.3
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	87.01
KOG3060|consensus	289		86.95
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.56
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.31
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.82
KOG1156|consensus	700		85.69
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	85.24
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	84.81
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	84.51
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	84.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	84.22
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	84.17
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.81
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.66
KOG1127|consensus	1238		82.62
KOG3081|consensus	299		81.98
KOG3060|consensus	289		81.96
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	81.71
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	80.76
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	80.58
KOG0546|consensus	372		80.52
KOG1174|consensus	564		80.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	80.08

>KOG2265|consensus

Probab=99.79  E-value=3.5e-19  Score=149.99  Aligned_cols=111  Identities=20%  Similarity=0.263  Sum_probs=92.7

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-CC-CCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           5 VKESCWRQTPSKVFITVPLY-NV-PTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~~-~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      .+.|+|+||..+|.|.|++| |+ ++++++|.|...+|+|+..  +.+++|+|+++|++++|+|+|+++++++++.|+..
T Consensus        18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K~~   97 (179)
T KOG2265|consen   18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTWTIEDGKMIVILLKKSN   97 (179)
T ss_pred             ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceEEecCCEEEEEEeeccc
Confidence            47899999999999999998 77 8899999999999999985  56899999999999999999999977776666666


Q ss_pred             --cccccc---cc--hhhh--HHHHHhhhhcHHHHHHHHHhHHH
Q psy5819          81 --AMWDEK---KD--KRSK--EAVSVQMKLETQEQTDVSNMKER  115 (296)
Q Consensus        81 --~~W~~L---k~--e~~k--~~~~~~~~le~e~R~~ie~~k~~  115 (296)
                        .||.+|   .+  +-.+  ...+.+.+||+++|+++|+|.-.
T Consensus        98 ~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfd  141 (179)
T KOG2265|consen   98 KMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFD  141 (179)
T ss_pred             hHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchh
Confidence              469999   11  1111  12345789999999999999877

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.77  E-value=2.6e-18  Score=131.21  Aligned_cols=79  Identities=23%  Similarity=0.353  Sum_probs=72.7

Q ss_pred             cEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeecCcc-c
Q psy5819           8 SCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKSEQA-M   82 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~~~~-~   82 (296)
                      |+|+||.++|+|+|++| ++..++++|.++.++|.|++.  +.+++|+||++|++++|+|++.++ +|+|+|.|++++ +
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~   80 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT   80 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence            89999999999999996 988999999999999999875  457899999999999999999765 699999999987 6


Q ss_pred             cccc
Q psy5819          83 WDEK   86 (296)
Q Consensus        83 W~~L   86 (296)
                      |++|
T Consensus        81 W~~L   84 (85)
T cd06493          81 WPEL   84 (85)
T ss_pred             cccc
Confidence            9987

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.76  E-value=4.4e-18  Score=132.10  Aligned_cols=85  Identities=24%  Similarity=0.369  Sum_probs=76.8

Q ss_pred             CcccCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecc-eEEeecccCCcccCCceEEeeCCE-EEEEEeec
Q psy5819           2 PIIVKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGN-YIFEKLLLRPIVEEASRIRLENNE-AEFELIKS   78 (296)
Q Consensus         2 p~~~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~~~-v~i~L~K~   78 (296)
                      |-....|+|+||.++|+|+|++| |++.++++|.++..+|+|.+.+ .+++|+||++|++++|+|++++++ |+|+|.|.
T Consensus         2 ~~~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled~k~l~I~L~K~   81 (93)
T cd06494           2 PCKTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLEDRKLIRIVLTKS   81 (93)
T ss_pred             CccCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEECCcEEEEEEEeC
Confidence            44568899999999999999998 9999999999999999999763 378999999999999999999998 69999999


Q ss_pred             Ccc---ccccc
Q psy5819          79 EQA---MWDEK   86 (296)
Q Consensus        79 ~~~---~W~~L   86 (296)
                      +.+   +|++|
T Consensus        82 ~~~~~~~W~sl   92 (93)
T cd06494          82 NRDAGNCWKSL   92 (93)
T ss_pred             CCCCCcccccc
Confidence            765   69986

Little is known about the function of the proteins in this subgroup.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.76  E-value=4.4e-18  Score=134.08  Aligned_cols=82  Identities=23%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-C-CCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCC-EEEEEEe
Q psy5819           5 VKESCWRQTPSKVFITVPLY-N-VPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENN-EAEFELI   76 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~-~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~   76 (296)
                      ...|+|+||.++|+|+|++| + ++++++.|.++..+|+|++.     ..+++|+||++|++++|+|+++++ .|+|+|.
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~   83 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS   83 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence            46899999999999999999 6 46899999999999999984     257899999999999999999995 5899999


Q ss_pred             ecCccccccc
Q psy5819          77 KSEQAMWDEK   86 (296)
Q Consensus        77 K~~~~~W~~L   86 (296)
                      |....||++|
T Consensus        84 K~~~~wW~~v   93 (102)
T cd06495          84 KCSEVWWNAV   93 (102)
T ss_pred             ECCCcccchh
Confidence            9987789998

Little is known about the function of the proteins in this subgroup.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.74  E-value=1.3e-17  Score=128.07  Aligned_cols=79  Identities=23%  Similarity=0.269  Sum_probs=72.5

Q ss_pred             cEEEeeCCEEEEEEEeC-C--CCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeecCcc
Q psy5819           8 SCWRQTPSKVFITVPLY-N--VPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKSEQA   81 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~-~--~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~~~~   81 (296)
                      |+|+||.++|+|+|++| +  +++++++|.++..+|+|+..  +++++|+||++|++++|+|+++++ .|+|+|.|.+++
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~   80 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM   80 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence            89999999999999997 4  78899999999999999986  468999999999999999999885 799999999876


Q ss_pred             -ccccc
Q psy5819          82 -MWDEK   86 (296)
Q Consensus        82 -~W~~L   86 (296)
                       +|++|
T Consensus        81 ~wW~~l   86 (87)
T cd06492          81 EWWSRL   86 (87)
T ss_pred             cccccc
Confidence             79987

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.73  E-value=1.7e-17  Score=124.07  Aligned_cols=77  Identities=40%  Similarity=0.701  Sum_probs=74.8

Q ss_pred             EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecceEEeecccCCcccCCceEEeeCCEEEEEEeecCccccccc
Q psy5819          10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEK   86 (296)
Q Consensus        10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W~~L   86 (296)
                      |+||++.|+|+|.+||++..+++|.+++.+|+|+..+|.+.++||++|++++|+|++.+++|+|+|.|+++++|++|
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~~L   77 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWEAL   77 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccccc
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999899987

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.73  E-value=1.8e-17  Score=132.03  Aligned_cols=79  Identities=20%  Similarity=0.373  Sum_probs=73.0

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEeecC
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSE   79 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~   79 (296)
                      |.|.|+||.++|+|+|+++++  .++.|.++..+|.|++.      .|.++++||++|+|++|+|++.+++|+|+|.|++
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~   78 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE   78 (108)
T ss_pred             CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence            469999999999999999997  78999999999988763      2889999999999999999999999999999999


Q ss_pred             -ccccccc
Q psy5819          80 -QAMWDEK   86 (296)
Q Consensus        80 -~~~W~~L   86 (296)
                       +++|++|
T Consensus        79 ~~~~W~~L   86 (108)
T cd06465          79 AGEYWPRL   86 (108)
T ss_pred             CCCCCccc
Confidence             7889999

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.71  E-value=6.7e-17  Score=124.84  Aligned_cols=82  Identities=24%  Similarity=0.385  Sum_probs=73.7

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCC---CcceEEeeccEEEEeec-----ceEEeec-ccCCcccCCceEEeeCCEEEEEE
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPT---HKVDVFTSESYIKLHYG-----NYIFEKL-LLRPIVEEASRIRLENNEAEFEL   75 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~---~~~~V~~~~~~lkv~~~-----~~~~~~~-L~~~Id~e~S~~~i~~~~v~i~L   75 (296)
                      +..|+|+||.+.|+|+|+++++..   .++.|.++..+|+|++.     +|.+... ||++|++++|+|++.+++|+|+|
T Consensus         1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L   80 (92)
T cd06468           1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL   80 (92)
T ss_pred             CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence            368999999999999999998765   88999999999998863     4667665 99999999999999999999999


Q ss_pred             eecCccccccc
Q psy5819          76 IKSEQAMWDEK   86 (296)
Q Consensus        76 ~K~~~~~W~~L   86 (296)
                      .|+++++|++|
T Consensus        81 ~K~~~~~W~~L   91 (92)
T cd06468          81 AKKKEKKWESL   91 (92)
T ss_pred             EeCCCCccCcc
Confidence            99999889987

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.71  E-value=7.1e-17  Score=122.67  Aligned_cols=79  Identities=23%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             cEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeC-CEEEEEEeecCcc-c
Q psy5819           8 SCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLEN-NEAEFELIKSEQA-M   82 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K~~~~-~   82 (296)
                      |.|+||.++|+|+|++| ++...+++|.+++++|+|++.  .+++++.||++|++++|+|++.+ ++|+|+|.|++++ +
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~   80 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW   80 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence            89999999999999998 778899999999999999986  57889999999999999999999 9999999999984 7


Q ss_pred             cccc
Q psy5819          83 WDEK   86 (296)
Q Consensus        83 W~~L   86 (296)
                      |++|
T Consensus        81 W~~L   84 (85)
T cd06467          81 WPSL   84 (85)
T ss_pred             cccc
Confidence            9987

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.69  E-value=1.4e-16  Score=122.20  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCcc
Q psy5819           7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQA   81 (296)
Q Consensus         7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~   81 (296)
                      +|+|+||.+.|+|+|.++++.+.++.|.++...|.|++     ..|.+.++||++|+|+.|+|++.+++|+|+|.|++++
T Consensus         2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~~   81 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEPG   81 (87)
T ss_pred             CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCCC
Confidence            69999999999999999999999999999888877654     2588999999999999999999999999999999988


Q ss_pred             ccccc
Q psy5819          82 MWDEK   86 (296)
Q Consensus        82 ~W~~L   86 (296)
                      .|++|
T Consensus        82 ~W~~L   86 (87)
T cd06488          82 SWAKL   86 (87)
T ss_pred             cCccC
Confidence            99987

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.68  E-value=1.5e-16  Score=120.38  Aligned_cols=78  Identities=28%  Similarity=0.365  Sum_probs=73.1

Q ss_pred             EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCcccc
Q psy5819           9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMW   83 (296)
Q Consensus         9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W   83 (296)
                      +|+||.+.|+|+|++||+...++.|.++.+.|.|++.     .|.++++||++|+|++|+|++.+++|+|+|.|++++.|
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W   80 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence            5999999999999999999999999999999988652     58899999999999999999999999999999999889


Q ss_pred             ccc
Q psy5819          84 DEK   86 (296)
Q Consensus        84 ~~L   86 (296)
                      ++|
T Consensus        81 ~~L   83 (84)
T cd06466          81 PSL   83 (84)
T ss_pred             ccC
Confidence            987

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.67  E-value=2.6e-16  Score=119.68  Aligned_cols=78  Identities=31%  Similarity=0.445  Sum_probs=73.0

Q ss_pred             EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCcccc
Q psy5819           9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMW   83 (296)
Q Consensus         9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W   83 (296)
                      +|+||.+.|+|+|.++|+...++.|.+++..|.+++     ..|.|.++||++|+|++|+|++.+++|+|+|.|++++.|
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W   80 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence            599999999999999999999999999999988875     268999999999999999999999999999999988889


Q ss_pred             ccc
Q psy5819          84 DEK   86 (296)
Q Consensus        84 ~~L   86 (296)
                      ++|
T Consensus        81 ~~L   83 (84)
T cd06489          81 SKL   83 (84)
T ss_pred             ccC
Confidence            987

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.63  E-value=2.8e-15  Score=111.31  Aligned_cols=72  Identities=25%  Similarity=0.392  Sum_probs=64.3

Q ss_pred             CCcEEEeeCCEEEEEEEeCCC--CCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819           6 KESCWRQTPSKVFITVPLYNV--PTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~--~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      |+|.|+||.+.|+|+|++++.  ...+++|.+++.+|+|.+.     .|.++++||++|++++|+|++.+++|+|+|.|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            689999999999999999644  4889999999999999864     58889999999999999999999999999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.61  E-value=2.9e-15  Score=112.17  Aligned_cols=77  Identities=31%  Similarity=0.486  Sum_probs=71.5

Q ss_pred             EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCc-ccc
Q psy5819          10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ-AMW   83 (296)
Q Consensus        10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~-~~W   83 (296)
                      |+||.+.|+|+|++|++...+++|.+++++|+|.+     .+|.++++|+++|+++.|+|++.+++|+|+|.|+.+ ++|
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W   80 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW   80 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence            99999999999999988889999999988888776     468999999999999999999999999999999998 679


Q ss_pred             ccc
Q psy5819          84 DEK   86 (296)
Q Consensus        84 ~~L   86 (296)
                      ++|
T Consensus        81 ~~l   83 (84)
T cd06463          81 PRL   83 (84)
T ss_pred             ccc
Confidence            987

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.61  E-value=4e-15  Score=118.26  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=70.7

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      |.+.|+|+.+.|+|||.++++  .++.|.+++.+|.++..     .|.++++||++|+|++|++++++.+|+|.|.|+++
T Consensus         2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~   79 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKE   79 (106)
T ss_pred             CcceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCC
Confidence            679999999999999999995  57888888888877752     48889999999999999999999999999999986


Q ss_pred             c-ccccc
Q psy5819          81 A-MWDEK   86 (296)
Q Consensus        81 ~-~W~~L   86 (296)
                      + .||+|
T Consensus        80 ~~~WprL   86 (106)
T cd00237          80 GVAWPRL   86 (106)
T ss_pred             CCCCchh
Confidence            6 69999

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.45  E-value=4.7e-13  Score=102.69  Aligned_cols=78  Identities=23%  Similarity=0.273  Sum_probs=64.0

Q ss_pred             cEEEeeCCEEEEEEEeCC--CCCCcceEEeeccEEEEeec----ceEEeecccCCcccCCceEEee--CCEEEEEEeecC
Q psy5819           8 SCWRQTPSKVFITVPLYN--VPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIRLE--NNEAEFELIKSE   79 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~--~~~~~~~V~~~~~~lkv~~~----~~~~~~~L~~~Id~e~S~~~i~--~~~v~i~L~K~~   79 (296)
                      |+|+||.+.|+|+|..++  .....+.+......|.|.+.    .|.++++|+++|+++. ++++.  .++|||.|.|++
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence            799999999999999985  44455556667767777752    4788889999998665 88887  569999999999


Q ss_pred             ccccccc
Q psy5819          80 QAMWDEK   86 (296)
Q Consensus        80 ~~~W~~L   86 (296)
                      ++.|++|
T Consensus        80 ~~~W~~L   86 (87)
T cd06490          80 PEKWTSL   86 (87)
T ss_pred             CCccccC
Confidence            9889987

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>KOG0553|consensus

Probab=99.43  E-value=2.1e-13  Score=124.62  Aligned_cols=64  Identities=30%  Similarity=0.481  Sum_probs=61.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ..++.||.+||.+++.++|++|+.+|++||.++|.++.+|+|||++|.+||.|..||+||..|.
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al  142 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL  142 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999873

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.42  E-value=4.5e-13  Score=127.81  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=76.0

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      .+|+|+||.+.|+|+|.++|+...++.|.++...|.|.+.     .|.|.+.||++|+|+.|+++|..++|+|+|.|+++
T Consensus       157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~~  236 (356)
T PLN03088        157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEP  236 (356)
T ss_pred             cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecCCC
Confidence            6799999999999999999999999999999998888762     68889999999999999999999999999999998


Q ss_pred             cccccc
Q psy5819          81 AMWDEK   86 (296)
Q Consensus        81 ~~W~~L   86 (296)
                      +.|++|
T Consensus       237 ~~W~~L  242 (356)
T PLN03088        237 ITWASL  242 (356)
T ss_pred             CCcccc
Confidence            889999

>KOG1309|consensus

Probab=99.40  E-value=5.4e-13  Score=113.08  Aligned_cols=81  Identities=28%  Similarity=0.406  Sum_probs=75.1

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      .+|+|+||.+.|+|+|..+++...+|+|.++.+.|++...     .|.+.+.|||+|.|+.|++++...+|+|+|.|.+.
T Consensus         4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~~~   83 (196)
T KOG1309|consen    4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKAEI   83 (196)
T ss_pred             ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccccc
Confidence            4799999999999999999999999999999988887763     48889999999999999999999999999999877


Q ss_pred             cccccc
Q psy5819          81 AMWDEK   86 (296)
Q Consensus        81 ~~W~~L   86 (296)
                      ..|..|
T Consensus        84 irW~~L   89 (196)
T KOG1309|consen   84 IRWESL   89 (196)
T ss_pred             hhhhhh
Confidence            779999

>KOG0551|consensus

Probab=99.37  E-value=5.3e-13  Score=123.32  Aligned_cols=84  Identities=32%  Similarity=0.432  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHH
Q psy5819         212 QKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHK  287 (296)
Q Consensus       212 ~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~  287 (296)
                      .+..++++++.++...-.+.+ .|..+|+.||.+|+.++|..|+.+||++|+....    ++.||+|||+|++.+|||..
T Consensus        59 ~~~~~~LqslK~da~E~ep~E-~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs  137 (390)
T KOG0551|consen   59 NPDNVCLQSLKADAEEGEPHE-QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRS  137 (390)
T ss_pred             CccHHHHHHhhhccccCChHH-HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHH
Confidence            445567888888755555555 6899999999999999999999999999987654    67999999999999999999


Q ss_pred             HHHHHHhcC
Q psy5819         288 AVDDASEVR  296 (296)
Q Consensus       288 Ai~D~~~A~  296 (296)
                      ||.||++||
T Consensus       138 ~l~Dcs~al  146 (390)
T KOG0551|consen  138 ALNDCSAAL  146 (390)
T ss_pred             HHHHHHHHH
Confidence            999999986

>KOG0547|consensus

Probab=99.28  E-value=4.4e-12  Score=122.16  Aligned_cols=63  Identities=32%  Similarity=0.614  Sum_probs=60.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..+|.+||.+|++|+|.+||.+|++||.++|+.+.+|+|||+||..+|+|.+.++||++|.
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL  176 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL  176 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence            478899999999999999999999999999999999999999999999999999999999874

>KOG0548|consensus

Probab=99.26  E-value=1e-11  Score=120.73  Aligned_cols=62  Identities=35%  Similarity=0.541  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +...+.+||++|+.|+|..|+..|++||..+|+++.+|+|||+||++||++..|+.||..++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i  419 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI  419 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999998864

>KOG4234|consensus

Probab=99.20  E-value=2.8e-11  Score=105.48  Aligned_cols=64  Identities=38%  Similarity=0.674  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-----LACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ..+..||..||.+|++|+|..|...|+.||.++|.     ...||+|||+|+++|+.+..||.||++|+
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai  161 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI  161 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence            35788999999999999999999999999999996     45999999999999999999999999984

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.18  E-value=7.8e-11  Score=85.16  Aligned_cols=63  Identities=25%  Similarity=0.389  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN-NLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~-~~~~Ai~D~~~A~  296 (296)
                      +|..+...|..++..|+|..|+.+|++||+++|+++.+|+|||.||+.+| ++.+|+.++.+|+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999 7999999999873

...

>KOG4648|consensus

Probab=99.12  E-value=4.4e-11  Score=111.36  Aligned_cols=62  Identities=26%  Similarity=0.457  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+|++||.||++|.|.+||.||+++|.++|.++.+|.|||.+|++++.|.-|..||+.|
T Consensus        96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence            35568999999999999999999999999999999999999999999999999999999987

>KOG3158|consensus

Probab=99.08  E-value=1.7e-10  Score=97.44  Aligned_cols=91  Identities=22%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             cccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEe
Q psy5819           3 IIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELI   76 (296)
Q Consensus         3 ~~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~   76 (296)
                      +++|...|+|+.+-|+|+|-|.+.+  +++|.+.+.+|.+++.      .|..+++||+.|||++|++++.+..|...|+
T Consensus         5 ~~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~   82 (180)
T KOG3158|consen    5 MQPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR   82 (180)
T ss_pred             ccCCcchhhhhcCeEEEEEEeccCc--cceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence            4679999999999999999999864  6777777777777753      2556799999999999999999999999999


Q ss_pred             ecCcc-ccccc----------cchhhhHHH
Q psy5819          77 KSEQA-MWDEK----------KDKRSKEAV   95 (296)
Q Consensus        77 K~~~~-~W~~L----------k~e~~k~~~   95 (296)
                      |++.+ .||+|          +.++++|..
T Consensus        83 K~e~~~~WprLtkeK~K~hwLkvDFdkW~D  112 (180)
T KOG3158|consen   83 KKELGEYWPRLTKEKAKLHWLKVDFDKWVD  112 (180)
T ss_pred             ccccccccchhhhcccccceEEcchhhccc
Confidence            99885 59999          357777743

>KOG1667|consensus

Probab=99.00  E-value=9.7e-10  Score=97.87  Aligned_cols=83  Identities=17%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      .--+|+|.||.+.|+|+|+.++.-+..-.|..+...|.|++.      .|-++++|++-|+++.|...+..++|+|+|.|
T Consensus       213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k  292 (320)
T KOG1667|consen  213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK  292 (320)
T ss_pred             ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence            345899999999999999999988888888888888887752      34557779999999999999999999999999


Q ss_pred             cCccccccc
Q psy5819          78 SEQAMWDEK   86 (296)
Q Consensus        78 ~~~~~W~~L   86 (296)
                      ++++.|++|
T Consensus       293 ~ep~sWa~L  301 (320)
T KOG1667|consen  293 AEPGSWARL  301 (320)
T ss_pred             cCCCCcccc
Confidence            999999999

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=98.97  E-value=2e-09  Score=78.50  Aligned_cols=68  Identities=28%  Similarity=0.343  Sum_probs=62.4

Q ss_pred             EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee------------cceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819          10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY------------GNYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus        10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~------------~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      |+|+.+.|+|+|.+||....+++|.+..+.|.|..            ..|.+.+.|+++|+++.++|++.++.|+|.|.|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK   80 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence            99999999999999999899999999988887773            357789999999999999999999999999987

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG4642|consensus

Probab=98.93  E-value=5.9e-10  Score=99.33  Aligned_cols=63  Identities=27%  Similarity=0.498  Sum_probs=60.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..++++||.+|....|..||++|++||.++|..+++|-|||.||+++++|..+..||.+|+
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral   71 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL   71 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999874

>KOG0548|consensus

Probab=98.93  E-value=1e-09  Score=106.91  Aligned_cols=62  Identities=34%  Similarity=0.552  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +..++.+||.+|..|+|..||.+|+.||.++|.+..+|+||++||.++|+|.+|+.|..++|
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999998864

>KOG3260|consensus

Probab=98.83  E-value=4.3e-09  Score=89.44  Aligned_cols=82  Identities=26%  Similarity=0.303  Sum_probs=72.9

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEE-eecccCCcccCCceEEeeCCEEEEEEeec
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIF-EKLLLRPIVEEASRIRLENNEAEFELIKS   78 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~-~~~L~~~Id~e~S~~~i~~~~v~i~L~K~   78 (296)
                      +..|.|.|+..+|.++|.|.|+...+|.|.+++.+|.+.+     ..|-+ ...|++||+++.|+-+|..+.|.|.++|.
T Consensus        74 vt~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV  153 (224)
T KOG3260|consen   74 VTLYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV  153 (224)
T ss_pred             hhhcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence            4679999999999999999999999999999998876654     35655 44699999999999999999999999888


Q ss_pred             Cccccccc
Q psy5819          79 EQAMWDEK   86 (296)
Q Consensus        79 ~~~~W~~L   86 (296)
                      +...|+-|
T Consensus       154 e~~rwd~L  161 (224)
T KOG3260|consen  154 ENTRWDYL  161 (224)
T ss_pred             hcccchHH
Confidence            88889999

>KOG0550|consensus

Probab=98.77  E-value=8.1e-09  Score=98.22  Aligned_cols=62  Identities=34%  Similarity=0.586  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      -...+.+||.+|++|+|..|-++|+.||.++|+    ++.||.|||+++++||+..+||.||+.|.
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            456789999999999999999999999999997    67999999999999999999999999873

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.57  E-value=1.7e-07  Score=89.59  Aligned_cols=58  Identities=36%  Similarity=0.585  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      |+.+|+.+|..|+|..|+.+|++||.++|.++.+|+|||.||+.+|+|..|+.+|.+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A   62 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA   62 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4445555555555555555555555555555555555555555555555555555443

>KOG0376|consensus

Probab=98.56  E-value=3.4e-08  Score=95.66  Aligned_cols=63  Identities=30%  Similarity=0.452  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..++++||.+|+.+.|..|+..|++||+++|+.+.+|.|||++|++.++|..|++||.+|.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai   65 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI   65 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence            367789999999999999999999999999999999999999999999999999999999874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.55  E-value=1.7e-07  Score=95.44  Aligned_cols=62  Identities=32%  Similarity=0.551  Sum_probs=57.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..+++.|+.+|+.|+|..||..|++||.++|+ +.+|+|+|.||+++|+|.+|+.+|++|+
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al  187 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAAL  187 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3677999999999999999999999999999995 7899999999999999999999999873

>KOG4379|consensus

Probab=98.53  E-value=1.7e-07  Score=89.69  Aligned_cols=82  Identities=20%  Similarity=0.335  Sum_probs=72.6

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecc-eEEeecccCCcccCCceEEeeC-CEEEEEEeecCcc
Q psy5819           5 VKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGN-YIFEKLLLRPIVEEASRIRLEN-NEAEFELIKSEQA   81 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K~~~~   81 (296)
                      .|-|.|.||.++|+|++.+| ..+...+.|.....+|-|.+.. -.|+|.||+.|+.+.|.|.|.. +++++.|.|++.+
T Consensus       289 ~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~de~  368 (596)
T KOG4379|consen  289 PPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDHVIFDGELYASVGHELSAFIIAEANGLELSLTKADEI  368 (596)
T ss_pred             CccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeeeEEeccchhhhccccchhhhhhhhccceEEEeecccc
Confidence            58899999999999999999 6667788888888888777654 4779999999999999999987 8999999999777


Q ss_pred             c-cccc
Q psy5819          82 M-WDEK   86 (296)
Q Consensus        82 ~-W~~L   86 (296)
                      . |++|
T Consensus       369 ~twprL  374 (596)
T KOG4379|consen  369 QTWPRL  374 (596)
T ss_pred             cccchh
Confidence            5 9999

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.51  E-value=5.2e-07  Score=87.61  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=60.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC---LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~---ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+.+.|..+|..|+|++|+.+|++||.++|+++.   +|+|+|.||.++|++.+|+.++.+|
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556899999999999999999999999999999999985   5999999999999999999999887

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.45  E-value=7.1e-07  Score=74.39  Aligned_cols=65  Identities=12%  Similarity=-0.016  Sum_probs=61.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..+...|+|.+|+.+|.+|+.++|.++..++|+|.|+..+|++.+|+..+..|
T Consensus        54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.45  E-value=6.4e-07  Score=65.05  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=51.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       242 Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.+++.++|..|+.++..+|.++|.++.++.++|.||..+|+|.+|+.+++.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999876

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.40  E-value=9.1e-07  Score=62.99  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|..++..|+|.+|+..|.++++.+|.++.+++.+|.|++.+|++.+|+..+.++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999888765

>KOG0543|consensus

Probab=98.40  E-value=4.8e-07  Score=86.18  Aligned_cols=63  Identities=22%  Similarity=0.347  Sum_probs=56.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------------LACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+...|++||.+|+.|+|..|+..|.+|+..-..               ...+|+|.|+||+||+.|..||.-|++|+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3678899999999999999999999999976441               23899999999999999999999999874

>KOG0550|consensus

Probab=98.27  E-value=6.2e-07  Score=85.58  Aligned_cols=62  Identities=29%  Similarity=0.599  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++.++.+||.+++..+|..|+..|+.||+++|+++..|.|||+|++.+++|..|+-|+.+.
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~  109 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQS  109 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhh
Confidence            37889999999999999999999999999999999999999999999999999999998654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.23  E-value=4.1e-06  Score=59.89  Aligned_cols=51  Identities=18%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       245 ~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +++.|+|.+|+..|.+++..+|++..++++.|.||++.|++.+|..-+.++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999887654

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.22  E-value=4.7e-06  Score=70.52  Aligned_cols=63  Identities=19%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++..+.+.|-.+-..|+|.+||.+|..|+.++|+++..|.|.|.|++++|+...|..-+..|
T Consensus        67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363         67 WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999999988888777655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.17  E-value=8.8e-06  Score=67.76  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      |..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.++..+|++.+|+..+.+|
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4457788999999999999999999999999999999999999999999999999999876

>KOG4555|consensus

Probab=98.16  E-value=6.9e-06  Score=67.58  Aligned_cols=61  Identities=26%  Similarity=0.346  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..|--+|-.+-..|+...|++.|++||.+.|..+++|+|||.++--.|+..+|+.|.++|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            4556677888899999999999999999999999999999999999999999999999987

>KOG0545|consensus

Probab=98.14  E-value=2.8e-06  Score=76.52  Aligned_cols=64  Identities=20%  Similarity=0.319  Sum_probs=55.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CC----------CChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CP----------NLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p----------~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ..+...|.++||.+|+.|+|.+|+.+|..||-.        -|          ....+|.|-|.|++..|+|.++++.|+
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345677999999999999999999999999843        22          255999999999999999999999998


Q ss_pred             hc
Q psy5819         294 EV  295 (296)
Q Consensus       294 ~A  295 (296)
                      .+
T Consensus       255 ei  256 (329)
T KOG0545|consen  255 EI  256 (329)
T ss_pred             HH
Confidence            65

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.12  E-value=1.3e-05  Score=74.47  Aligned_cols=65  Identities=25%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..+...|+|.+|+..|.+||+++|++..+|.|||.+++..|++.+|+.++.++
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a  158 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF  158 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999875

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=98.04  E-value=2.6e-05  Score=60.03  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             cEEEeeCCEEEEEEEeCCCCCCcceEEeec-cEEEEeec--------------------ceEEeecccCCcccCCceEEe
Q psy5819           8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSE-SYIKLHYG--------------------NYIFEKLLLRPIVEEASRIRL   66 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~-~~lkv~~~--------------------~~~~~~~L~~~Id~e~S~~~i   66 (296)
                      ++|.+|++.+.|.+.|||+++.+++|.+.. +.|.|+..                    .|.-.+.|..+|+++..++++
T Consensus         2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~   81 (92)
T cd06472           2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL   81 (92)
T ss_pred             ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence            689999999999999999999999999976 47777652                    123366799999999999999


Q ss_pred             eCCEEEEEEee
Q psy5819          67 ENNEAEFELIK   77 (296)
Q Consensus        67 ~~~~v~i~L~K   77 (296)
                      .+|.|.|+|.|
T Consensus        82 ~nGvL~I~lPK   92 (92)
T cd06472          82 ENGVLTVTVPK   92 (92)
T ss_pred             ECCEEEEEecC
Confidence            99999999976

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>KOG1308|consensus

Probab=97.98  E-value=1.4e-06  Score=81.52  Aligned_cols=63  Identities=25%  Similarity=0.435  Sum_probs=59.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+...+.++.+++..|.++.||..|+.||.++|..+.+|.+|+.+|++|+.+..||+||+.|.
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~  175 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI  175 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence            356788999999999999999999999999999999999999999999999999999999873

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.1e-05  Score=63.52  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=67.6

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--c------------------eEEeecccCCcccCCceE
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--N------------------YIFEKLLLRPIVEEASRI   64 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--~------------------~~~~~~L~~~Id~e~S~~   64 (296)
                      .|.|.+.+|++.+.|++.|||+...+++|.+..+.|.|...  .                  |.-.+.|...|+++..++
T Consensus        40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A  119 (146)
T COG0071          40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA  119 (146)
T ss_pred             CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence            47899999999999999999999999999999998888752  1                  223667999999999999


Q ss_pred             EeeCCEEEEEEeecCcc
Q psy5819          65 RLENNEAEFELIKSEQA   81 (296)
Q Consensus        65 ~i~~~~v~i~L~K~~~~   81 (296)
                      ++.+|.|.|+|.|.++.
T Consensus       120 ~~~nGvL~I~lpk~~~~  136 (146)
T COG0071         120 KYKNGLLTVTLPKAEPE  136 (146)
T ss_pred             EeeCcEEEEEEeccccc
Confidence            99999999999998764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.95  E-value=3.3e-05  Score=62.37  Aligned_cols=64  Identities=20%  Similarity=0.142  Sum_probs=53.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|.+|+..|.+++..+|.++..++++|.||+.+|++..|+..+..+
T Consensus        48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4457778888888888888888888888888888888888888888888888888888877664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.94  E-value=4.3e-05  Score=61.65  Aligned_cols=62  Identities=16%  Similarity=0.180  Sum_probs=58.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|..++..|+|..|+..|.+++..+|.++.++.++|.|++.+|++..|+..+.++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999988765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=97.93  E-value=4.1e-06  Score=76.05  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecc------eEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGN------YIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~------~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      +|.|+||...+.|.|.-+.+...+|.+.++.+.|+|++.+      +.+...||+.|+|+.+..++-+.+++++|.|.+.
T Consensus       178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~  257 (368)
T COG5091         178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVEM  257 (368)
T ss_pred             eeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhhh
Confidence            7999999999999999998889999999999999999853      2346679999999999999999999999999988


Q ss_pred             cccccc
Q psy5819          81 AMWDEK   86 (296)
Q Consensus        81 ~~W~~L   86 (296)
                      ..|..|
T Consensus       258 v~W~~l  263 (368)
T COG5091         258 VRWGGL  263 (368)
T ss_pred             hhhccc
Confidence            789999

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.92  E-value=1e-05  Score=50.85  Aligned_cols=33  Identities=30%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819         257 AYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV  289 (296)
Q Consensus       257 ~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai  289 (296)
                      +|.+||+++|+++.+|+|+|.+|...|++.+|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            489999999999999999999999999999986

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.91  E-value=2.5e-05  Score=57.49  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC---P----NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~---p----~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|.+|+..|.+|+.+.   +    ..+.++.|.|.||..+|++.+|+.-+.+|
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4568889999999999999999999999762   1    24689999999999999999999988876

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.87  E-value=2.7e-05  Score=58.44  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+|+.|+|..|+..+.+ +..++.+..+.+-.|.|++++|+|.+|+.-+.+|
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            355677799999999999999999999 8899988888888899999999999999987764

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.83  E-value=7.7e-05  Score=55.89  Aligned_cols=68  Identities=15%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-------------------cceEEeecccCCcccCCceEEeeCCE
Q psy5819          10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-------------------GNYIFEKLLLRPIVEEASRIRLENNE   70 (296)
Q Consensus        10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-------------------~~~~~~~~L~~~Id~e~S~~~i~~~~   70 (296)
                      +.++.+.+.|.|.|||+...+++|.+....|.|..                   ..|.-...|...|+++..++.+.++.
T Consensus         2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~   81 (88)
T cd06464           2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENGV   81 (88)
T ss_pred             cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCE
Confidence            67889999999999999999999999999998873                   22445778999999999999999999


Q ss_pred             EEEEEee
Q psy5819          71 AEFELIK   77 (296)
Q Consensus        71 v~i~L~K   77 (296)
                      |.|++.|
T Consensus        82 L~I~~pk   88 (88)
T cd06464          82 LTITLPK   88 (88)
T ss_pred             EEEEEcC
Confidence            9999875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.81  E-value=8.7e-05  Score=69.01  Aligned_cols=63  Identities=19%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+..+|..+...|++..|+..|++||.++|+++.+|+++|.+|..+|++..|+..+.+|
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.80  E-value=9.1e-05  Score=53.02  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|++..|+..|..++...|.+..++.+.|.+++.+|++..|+..+..+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344667788899999999999999999999999988888899999999999999998877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.76  E-value=0.00012  Score=62.08  Aligned_cols=61  Identities=8%  Similarity=-0.057  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -+.+..-|..++..|+|.+|...|.-...++|.++..|+|.|+|+-.+|+|.+||.-+..|
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999988776

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.75  E-value=0.00027  Score=55.04  Aligned_cols=73  Identities=11%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------------------ceEEeecccCCcccCCceEEeeCCE
Q psy5819           9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------------------NYIFEKLLLRPIVEEASRIRLENNE   70 (296)
Q Consensus         9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------------------~~~~~~~L~~~Id~e~S~~~i~~~~   70 (296)
                      +|.++.+.+.|.+.|||+...+++|.+....|.|+..                  .|.-.+.|...||++..++++.+|.
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv   80 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV   80 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence            5899999999999999999999999999999988752                  1233667999999999999999999


Q ss_pred             EEEEEeecCcc
Q psy5819          71 AEFELIKSEQA   81 (296)
Q Consensus        71 v~i~L~K~~~~   81 (296)
                      |.|++.|....
T Consensus        81 L~I~~pk~~~~   91 (102)
T PF00011_consen   81 LTITIPKKEEE   91 (102)
T ss_dssp             EEEEEEBSSSC
T ss_pred             EEEEEEccccc
Confidence            99999998653

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.72  E-value=0.00017  Score=55.41  Aligned_cols=70  Identities=19%  Similarity=0.278  Sum_probs=58.2

Q ss_pred             CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------------ce--------EE--eecccCCcccCCceE
Q psy5819           7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------------NY--------IF--EKLLLRPIVEEASRI   64 (296)
Q Consensus         7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------------~~--------~~--~~~L~~~Id~e~S~~   64 (296)
                      ..+|.+|++.+.|.+.|||+...+++|.+..+.|.|+..            .|        .|  ...|. .|+++..++
T Consensus         2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A   80 (93)
T cd06471           2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA   80 (93)
T ss_pred             ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence            468999999999999999999999999999999988541            01        12  23465 799999999


Q ss_pred             EeeCCEEEEEEee
Q psy5819          65 RLENNEAEFELIK   77 (296)
Q Consensus        65 ~i~~~~v~i~L~K   77 (296)
                      ++.+|.|.|+|.|
T Consensus        81 ~~~dGvL~I~lPK   93 (93)
T cd06471          81 KYENGVLKITLPK   93 (93)
T ss_pred             EEECCEEEEEEcC
Confidence            9999999999976

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.67  E-value=0.00026  Score=55.11  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..+++.|+|..|+..|..++...|..   +.++.+.|.|+.++|++.+|+..+..+
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            4567778999999999999999999999998874   678999999999999999999887764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.66  E-value=0.00016  Score=73.71  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..+++.|+|..|+..|++||.++|++..+|.+||.||+.+|+|.+|+.|+..+
T Consensus       160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~  220 (615)
T TIGR00990       160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS  220 (615)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999988653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.59  E-value=0.00029  Score=60.04  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|.+|+.+|.+++.+.|+   .+.++.|+|.+|..+|+|.+|+..+.+|
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444566677777777777777777777777766554   2456777777777777777777766554

>KOG0624|consensus

Probab=97.58  E-value=9.2e-05  Score=69.75  Aligned_cols=63  Identities=22%  Similarity=0.252  Sum_probs=58.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...+.|+++|..|+|..|+..|-.||+.+|++..+++.||.+|+.+|.-..|+.|++++
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999876

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=97.51  E-value=0.00075  Score=51.77  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             cEEEeeC-CEEEEEEEeCCCCCCcceEEeeccEEEEee-------------------cceEEeecccCCcccCCceEEee
Q psy5819           8 SCWRQTP-SKVFITVPLYNVPTHKVDVFTSESYIKLHY-------------------GNYIFEKLLLRPIVEEASRIRLE   67 (296)
Q Consensus         8 y~W~QT~-~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-------------------~~~~~~~~L~~~Id~e~S~~~i~   67 (296)
                      +.-.++. +.+.|++.|||+++.+++|.+.++.|.|+.                   ..|.-.+.|...|+.+  .+++.
T Consensus         3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~   80 (90)
T cd06470           3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE   80 (90)
T ss_pred             eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence            4555664 899999999999999999999999999984                   1233366799999986  78999


Q ss_pred             CCEEEEEEee
Q psy5819          68 NNEAEFELIK   77 (296)
Q Consensus        68 ~~~v~i~L~K   77 (296)
                      +|.|.|+|.+
T Consensus        81 ~GvL~I~l~~   90 (90)
T cd06470          81 NGLLTIDLER   90 (90)
T ss_pred             CCEEEEEEEC
Confidence            9999999864

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.48  E-value=0.0003  Score=43.08  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL  268 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~  268 (296)
                      |..+...|..++..|+|.+|+.+|.+||.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678889999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.47  E-value=0.00023  Score=43.90  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL  268 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~  268 (296)
                      |..+..+|..++..|+|..|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3567889999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.46  E-value=0.00056  Score=48.79  Aligned_cols=58  Identities=29%  Similarity=0.417  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +...|..++..|+|..|+..|.++++..|.+..++.++|.|+...+++..|+..+..+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999988765

>PRK12370 invasion protein regulator; Provisional

Probab=97.44  E-value=0.00052  Score=69.28  Aligned_cols=64  Identities=17%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|.+|+..|.+||+++|+++.+|+++|.+++.+|++.+|+..+.+|
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4457778889999999999999999999999999999999999999999999999999998876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.44  E-value=0.00063  Score=57.54  Aligned_cols=64  Identities=17%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|.+|+..|.+|+.+.++   .+.+|.|.|.+|..+|++.+|+..|.+|
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334677788899999999999999999999988665   3468999999999999999999988876

>KOG4626|consensus

Probab=97.40  E-value=0.00026  Score=71.11  Aligned_cols=63  Identities=16%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      -+....+.|--+-++|++.+||.+|..||++.|..+.+|+|++..|-.+|+...|+.++++|.
T Consensus       387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            455666777777788888888888888888888888888888888888888888888888763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.39  E-value=0.00099  Score=58.97  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+..+...|..++..|+|..|+..|.+++..+|.++   .+++++|.||+.+|++..|+..+..+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            455688999999999999999999999999999999875   57899999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.39  E-value=0.00099  Score=51.73  Aligned_cols=61  Identities=16%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++...|++   +.+++++|.++++.|+|..|+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3567889999999999999999999999999876   578999999999999999999988764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.38  E-value=0.00096  Score=56.88  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|++..|+..|.+++...|.+..++.|.+.++...|++.+|+..+.++
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  125 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA  125 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4456777888999999999999999999999999999999999999999999999999888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.38  E-value=0.00082  Score=59.04  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=52.9

Q ss_pred             CCChHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQM-FRDGN--YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~-fk~g~--y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..+ +..|+  +.+|+..|.++++.+|+++.+++++|.+++.+|+|.+|+..+.++
T Consensus       104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34577778888875 67777  588999999999999999999999999999999999999888765

>KOG0553|consensus

Probab=97.36  E-value=0.0004  Score=64.25  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=64.1

Q ss_pred             CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+.-...+|..+-+|+-.|.+.|.|..||.....||.+||....+|...+.+|+.+|+|.+|+.-|.+|+
T Consensus       107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL  176 (304)
T KOG0553|consen  107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL  176 (304)
T ss_pred             HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence            3444566789999999999999999999999999999999999999999999999999999999988774

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.36  E-value=0.00035  Score=52.27  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         248 DGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       248 ~g~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +|+|..|+..|.+++..+|.  +..++++.|.||+++|+|.+|+..+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            68999999999999999995  577888899999999999999998854

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=97.35  E-value=0.00095  Score=50.92  Aligned_cols=67  Identities=21%  Similarity=0.269  Sum_probs=58.0

Q ss_pred             EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ceE---E--eecccCCcccCCceEEe-eCCEEEEEEe
Q psy5819          11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NYI---F--EKLLLRPIVEEASRIRL-ENNEAEFELI   76 (296)
Q Consensus        11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~~---~--~~~L~~~Id~e~S~~~i-~~~~v~i~L~   76 (296)
                      ..+++.+.|.+.+||+.+.+++|.+.++.|.|+..        .|.   |  .+.|...||++.-++++ .+|.|.|+|.
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            56889999999999999999999999999999862        121   3  66799999999999999 7999999987


Q ss_pred             e
Q psy5819          77 K   77 (296)
Q Consensus        77 K   77 (296)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.35  E-value=0.00074  Score=59.30  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCC--HHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH-LALNN--LHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~-lkl~~--~~~Ai~D~~~A  295 (296)
                      +..++..+...|..+...|+|..|+.+|.+|++++|+++.++.+.|.|+ +..|+  +.+|+.-+++|
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4556888999999999999999999999999999999999999999985 78788  58888877765

>KOG4234|consensus

Probab=97.33  E-value=0.00048  Score=60.73  Aligned_cols=64  Identities=16%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.-|-++|-.+++.+.+..||...++||+++|.+-.++..||-+|-++..|..|+.|+.+.
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4446678899999999999999999999999999999999999999999999999999999764

>KOG0624|consensus

Probab=97.33  E-value=0.00063  Score=64.28  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...++..|||..||...+..|++.|+++++|--||-||...|++..||+|...|
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a  215 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQA  215 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            46677888899999999999999999999999999999999999999999999998765

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=97.33  E-value=0.00089  Score=50.59  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec----------ceEEeecccCCcccCCceEEe-eCCEEEEEEee
Q psy5819          11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----------NYIFEKLLLRPIVEEASRIRL-ENNEAEFELIK   77 (296)
Q Consensus        11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~----------~~~~~~~L~~~Id~e~S~~~i-~~~~v~i~L~K   77 (296)
                      ..+.+.+.|.+.|||+++.+++|.+.++.|.|+..          .|.=.+.|..+||++..+..+ .++.|.|++.+
T Consensus         4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            35788999999999999999999999999999862          223366799999999999998 89999999864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=97.31  E-value=0.001  Score=50.59  Aligned_cols=67  Identities=7%  Similarity=0.037  Sum_probs=57.5

Q ss_pred             eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEee-CCEEEEEEee
Q psy5819          12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRLE-NNEAEFELIK   77 (296)
Q Consensus        12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i~-~~~v~i~L~K   77 (296)
                      -+.+.+.|++.+||+.+.+++|.+.++.|.|+..        .     |.=.+.|...||++.-++++. +|.|.|+|.|
T Consensus         4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk   83 (84)
T cd06498           4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR   83 (84)
T ss_pred             eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence            4678899999999999999999999999999862        1     222667999999999999996 9999999987


Q ss_pred             c
Q psy5819          78 S   78 (296)
Q Consensus        78 ~   78 (296)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.30  E-value=0.0013  Score=55.60  Aligned_cols=61  Identities=16%  Similarity=0.028  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-------HcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL-------ALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~l-------kl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|++.+|+.+|.+|+.++|.....+.|++.+|.       .+|++..|+.++.+|
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            5678899999999999999999999999999999998999999988       889999998888765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.30  E-value=0.0015  Score=55.61  Aligned_cols=63  Identities=21%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++...  +....++.++|.|++.+|++.+|+..+.++
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  161 (234)
T TIGR02521        97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA  161 (234)
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345667777888888888888888888888753  445677888888888888888888877765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10743 heat shock protein IbpA; Provisional

Probab=97.21  E-value=0.0024  Score=53.01  Aligned_cols=72  Identities=11%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCcEEEe-eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ceE--------E--eecccCCcccCCceEEe
Q psy5819           6 KESCWRQ-TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NYI--------F--EKLLLRPIVEEASRIRL   66 (296)
Q Consensus         6 ~~y~W~Q-T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~~--------~--~~~L~~~Id~e~S~~~i   66 (296)
                      |.+...+ +++.+.|++.|||+.+.+++|.+.++.|.|+..        .|+        |  .+.|...|+++  .+++
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~  112 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL  112 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE
Confidence            5577774 899999999999999999999999999988752        121        2  55699999998  3999


Q ss_pred             eCCEEEEEEeecC
Q psy5819          67 ENNEAEFELIKSE   79 (296)
Q Consensus        67 ~~~~v~i~L~K~~   79 (296)
                      .+|.|.|+|.|..
T Consensus       113 ~dGVL~I~lPK~~  125 (137)
T PRK10743        113 VNGLLYIDLERVI  125 (137)
T ss_pred             eCCEEEEEEeCCC
Confidence            9999999999963

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=97.20  E-value=0.0018  Score=49.04  Aligned_cols=67  Identities=9%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce-----EEeecccCCcccCCceEEe-eCCEEEEEEe
Q psy5819          11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY-----IFEKLLLRPIVEEASRIRL-ENNEAEFELI   76 (296)
Q Consensus        11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~-----~~~~~L~~~Id~e~S~~~i-~~~~v~i~L~   76 (296)
                      ..+.+.+.|.+.|||+++.+++|.+.++.|.|+..        .|     .=.+.|...||++.-+.++ .+|.|.|++.
T Consensus         3 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P   82 (83)
T cd06478           3 RLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP   82 (83)
T ss_pred             eecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence            35788999999999999999999999999988762        12     2266799999999999999 5999999987


Q ss_pred             e
Q psy5819          77 K   77 (296)
Q Consensus        77 K   77 (296)
                      |
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.18  E-value=0.0012  Score=43.47  Aligned_cols=43  Identities=21%  Similarity=0.050  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA  277 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~  277 (296)
                      |..+...|..+...|+++.|+..|.++|+.+|+++.++...|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3456778999999999999999999999999999999887764

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=97.15  E-value=0.0024  Score=48.73  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-------------ceEEeecccCCcccCCceEEee-CCEEEEE
Q psy5819           9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-------------NYIFEKLLLRPIVEEASRIRLE-NNEAEFE   74 (296)
Q Consensus         9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-------------~~~~~~~L~~~Id~e~S~~~i~-~~~v~i~   74 (296)
                      ++..|++.+.|.+.|||+.+.+++|.+.++.|.|+..             .|.=.+.|...||++..+..+. +|.|.|+
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~   83 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE   83 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence            5789999999999999999999999999999988752             1222667999999999999997 9999988


Q ss_pred             E
Q psy5819          75 L   75 (296)
Q Consensus        75 L   75 (296)
                      |
T Consensus        84 l   84 (86)
T cd06475          84 A   84 (86)
T ss_pred             e
Confidence            7

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.15  E-value=0.0016  Score=49.03  Aligned_cols=63  Identities=13%  Similarity=0.104  Sum_probs=54.7

Q ss_pred             CEEEEEEEeCCCCCCcceEEeeccEEEEeec-------------ceEEeecccCCcccCCceEEeeC-CEEEEEEee
Q psy5819          15 SKVFITVPLYNVPTHKVDVFTSESYIKLHYG-------------NYIFEKLLLRPIVEEASRIRLEN-NEAEFELIK   77 (296)
Q Consensus        15 ~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-------------~~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K   77 (296)
                      +.+.|.+.|||+.+.+++|.+.++.|.|...             .|.-.+.|...||++..++++.+ +.|.|++.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            5899999999999999999999999998762             23336779999999999999998 999999875

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG0543|consensus

Probab=97.14  E-value=0.0011  Score=63.47  Aligned_cols=59  Identities=24%  Similarity=0.193  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -+.+.+-.+.+.++|..|+...+++|.++|.|.-+++.|+.||+.+|+|+.|+.|+.+|
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999887

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.14  E-value=0.0018  Score=69.68  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.++..+...|..+...|++.+|+..|.+|++++|.++.++.|+|.|+..+|++.+|+..+.+|
T Consensus       640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4456777888888888888888888888888888888888888888888888888888888776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.13  E-value=0.0016  Score=59.17  Aligned_cols=62  Identities=23%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..-+...|..+|++|+|..|+..+.++..++|.+..+|+-+++||.++|++..|-..+.+|
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA  160 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQA  160 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence            45566667777888888888888888888888888888888888888888887777777665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.11  E-value=0.0017  Score=55.24  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL  285 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~  285 (296)
                      +..+...|..+++.|+|..|+..|.++|.+.|.+..++.+++.+|..+|+.
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence            467889999999999999999999999999999999999999999998873

>KOG4626|consensus

Probab=97.08  E-value=0.00065  Score=68.32  Aligned_cols=71  Identities=21%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             cCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         226 ADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       226 ~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +.+......+..+-+.||.+-..|+..+|+.+|++||.++|..+.+++|.|..|---|+..+||.-+..|+
T Consensus       413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL  483 (966)
T KOG4626|consen  413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL  483 (966)
T ss_pred             HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence            34556677789999999999999999999999999999999999999999999999999999999888763

>KOG1310|consensus

Probab=97.05  E-value=0.00084  Score=66.36  Aligned_cols=65  Identities=28%  Similarity=0.340  Sum_probs=60.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHhcC
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA---LNNLHKAVDDASEVR  296 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk---l~~~~~Ai~D~~~A~  296 (296)
                      ....++++..||..|-.+....||..|+++|...|....+|.|||+++++   .|+...|+.||..|+
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al  438 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL  438 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence            34578999999999999999999999999999999999999999999998   578899999999875

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=96.98  E-value=0.0053  Score=51.32  Aligned_cols=71  Identities=13%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             CCcEEEe-eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce--------EE--eecccCCcccCCceEEe
Q psy5819           6 KESCWRQ-TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY--------IF--EKLLLRPIVEEASRIRL   66 (296)
Q Consensus         6 ~~y~W~Q-T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~--------~~--~~~L~~~Id~e~S~~~i   66 (296)
                      |.+.=.+ +++.+.|++.|||+...+++|.+.++.|+|+..        .|        .|  .+.|...||++  .+++
T Consensus        33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~  110 (142)
T PRK11597         33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF  110 (142)
T ss_pred             CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence            5566676 467999999999999999999999999998752        12        12  45588899987  5999


Q ss_pred             eCCEEEEEEeec
Q psy5819          67 ENNEAEFELIKS   78 (296)
Q Consensus        67 ~~~~v~i~L~K~   78 (296)
                      .+|.|.|+|.|.
T Consensus       111 ~nGVL~I~lPK~  122 (142)
T PRK11597        111 VNGLLHIDLIRN  122 (142)
T ss_pred             cCCEEEEEEecc
Confidence            999999999986

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=96.96  E-value=0.004  Score=47.22  Aligned_cols=65  Identities=11%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce---EE--eecccCCcccCCceEEee-CCEEEEEEee
Q psy5819          13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY---IF--EKLLLRPIVEEASRIRLE-NNEAEFELIK   77 (296)
Q Consensus        13 T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~---~~--~~~L~~~Id~e~S~~~i~-~~~v~i~L~K   77 (296)
                      .++...|++.|||+++.+++|.+.++.|.|+..        .|   .|  ...|...||++.-+.++. +|.|.|+|.|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            467889999999999999999999999999752        12   12  566999999999999996 9999999865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.90  E-value=0.0036  Score=64.27  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++..+|.++.+++.+|.+|+.+|+|.+|+..+.++
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   82 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKA   82 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888877654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.90  E-value=0.0055  Score=53.81  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+..+...|..+|..|+|..|+..|+..+...|..   +.+.+..|.||++.|+|..|+..+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~   67 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER   67 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            47789999999999999999999999999987753   47888999999999999999988764

>KOG1125|consensus

Probab=96.83  E-value=0.0011  Score=65.97  Aligned_cols=63  Identities=24%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..-+...|-.+-....+.+||.+|++|+.+-|.+..+.+|.|.||+.+|-|.+|+..+-.|
T Consensus       462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            333334445666666667888888888888888888899999999999999999998877655

>PRK15331 chaperone protein SicA; Provisional

Probab=96.81  E-value=0.0026  Score=54.32  Aligned_cols=58  Identities=16%  Similarity=0.080  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      +..+...|-.+-..|+|..|+.+|..|.-++++++.-++.-|.||+.+|+...|..-+
T Consensus        71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f  128 (165)
T PRK15331         71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF  128 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555443

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=96.81  E-value=0.0053  Score=57.62  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=56.8

Q ss_pred             eCCEEEEEEEeCCC-CCCcceEEeeccEEEEeecc--eEEeecccCCcccCCceEEeeC--CEEEEEEe
Q psy5819          13 TPSKVFITVPLYNV-PTHKVDVFTSESYIKLHYGN--YIFEKLLLRPIVEEASRIRLEN--NEAEFELI   76 (296)
Q Consensus        13 T~~~V~i~V~l~~~-~~~~~~V~~~~~~lkv~~~~--~~~~~~L~~~Id~e~S~~~i~~--~~v~i~L~   76 (296)
                      ..+.+.|+|.|||+ +..++++.++...|.|..+.  |.|++.|..+|+.+.+.+++..  +.|.|+|.
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp  327 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP  327 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence            47899999999988 67899999999999999876  9999999999999999988865  68888873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.81  E-value=0.013  Score=48.88  Aligned_cols=63  Identities=19%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCC---------------HHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNN---------------LHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~---------------~~~Ai~D~~  293 (296)
                      +-........|..+|+.|+|..|+..|.+-|+++|..+   -+|+-||+|++.+..               ...|+.|+.
T Consensus        44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~  123 (142)
T PF13512_consen   44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE  123 (142)
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence            33567788899999999999999999999999999754   778889999999887               777777776


Q ss_pred             h
Q psy5819         294 E  294 (296)
Q Consensus       294 ~  294 (296)
                      .
T Consensus       124 ~  124 (142)
T PF13512_consen  124 Q  124 (142)
T ss_pred             H
Confidence            4

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.81  E-value=0.0073  Score=54.79  Aligned_cols=63  Identities=19%  Similarity=0.104  Sum_probs=54.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL---YSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~l---y~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+.+...|..+.+   .++.|.||+++++|..|+..+.+.
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            457778899999999999999999999999999987644   488999999999999999887653

>KOG1173|consensus

Probab=96.76  E-value=0.007  Score=60.31  Aligned_cols=60  Identities=23%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      -+.+.|-.+-+.+.|.+||.+|.+||.++|.++..|.-.|.||..+|+++.||..+.+|+
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            367789999999999999999999999999999999999999999999999999998873

>PRK15331 chaperone protein SicA; Provisional

Probab=96.74  E-value=0.0071  Score=51.66  Aligned_cols=61  Identities=15%  Similarity=-0.027  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -+.+...|-.+|..|+|.+|...|.-..-++|.++..+...|+|+..+++|.+|+.-+..|
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999999999999999999877654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.72  E-value=0.0062  Score=62.87  Aligned_cols=63  Identities=21%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.++.+++.+|..+|++.+|+..+.++
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345667777888888888888888888888888888888888888888888888888777654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.67  E-value=0.003  Score=38.80  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=24.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         269 ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.+|+|+|.||+.+|+|.+|+.+|.+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            468999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.61  E-value=0.0062  Score=53.83  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC---LYSNRAAAHLAL--------NNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~---ly~NRA~~~lkl--------~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|.+|+..|.++++..|+++.   ++++++.|++.+        |++..|+..+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~  141 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL  141 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999998775   689999999987        8899999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.59  E-value=0.0098  Score=57.81  Aligned_cols=65  Identities=11%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ....++.-|..++.-+++.|+|+.|+....+|+.+.|.+...|+..|.||+++|+|+.|+.-++.
T Consensus       229 ~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  229 ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            34455888999999999999999999999999999999999999999999999999999977653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4648|consensus

Probab=96.58  E-value=0.0018  Score=61.33  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +.....+|-.+.+++..||+.+.|..|-..++.||.++.....+|+.|+.+...||+..+|-.||..|+
T Consensus       124 ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL  192 (536)
T KOG4648|consen  124 IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVL  192 (536)
T ss_pred             hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Confidence            344555678889999999999999999999999999999999999999999999999999999998763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.58  E-value=0.0087  Score=62.17  Aligned_cols=65  Identities=12%  Similarity=0.013  Sum_probs=56.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|-.+-+.|+|++|+.+|.+++..+|+++.++.++|.++..+|+..+|...|.+|
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45567888888999999999999999999999888888999999999999999999998888776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.53  E-value=0.011  Score=61.16  Aligned_cols=62  Identities=8%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .++..+...|..++..|++.+|+..|.+++.++|.++.++.+++.++..+|++.+|+..+..
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~  169 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART  169 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            34667888899999999999999999999999999999999999999999999999887754

>KOG0547|consensus

Probab=96.51  E-value=0.0033  Score=61.76  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      |..+-+++-.|-..|+|..-+...|+||+++|+...+|+.||.+|-+||++.+|+.|.+-
T Consensus       149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv  208 (606)
T KOG0547|consen  149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV  208 (606)
T ss_pred             chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence            788999999999999999999999999999999999999999999999999999999763

>PRK12370 invasion protein regulator; Provisional

Probab=96.47  E-value=0.012  Score=59.43  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=50.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..++..|+|++|+..|.+|++++|.++.++.+++.+++.+|++.+|+.-+.++
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34456677788888888888888888888888888888777777777777788888887766543

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=96.44  E-value=0.013  Score=44.76  Aligned_cols=63  Identities=11%  Similarity=0.098  Sum_probs=52.6

Q ss_pred             CCEEEEEEEeCCCCCCcceEEeeccEEEEeec----------ceE-----E--eecccCCcccCCceEEe-eCCEEEEEE
Q psy5819          14 PSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----------NYI-----F--EKLLLRPIVEEASRIRL-ENNEAEFEL   75 (296)
Q Consensus        14 ~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~----------~~~-----~--~~~L~~~Id~e~S~~~i-~~~~v~i~L   75 (296)
                      .+.+.|++.|||+.+.+++|.+..+.|.|+..          .|.     |  .+.|..+||++...+.+ .++.|.|++
T Consensus         6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   85 (87)
T cd06481           6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA   85 (87)
T ss_pred             cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence            46789999999999999999999999988752          121     2  55699999999999999 789998876


Q ss_pred             e
Q psy5819          76 I   76 (296)
Q Consensus        76 ~   76 (296)
                      .
T Consensus        86 P   86 (87)
T cd06481          86 P   86 (87)
T ss_pred             C
Confidence            3

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.38  E-value=0.012  Score=61.06  Aligned_cols=64  Identities=6%  Similarity=-0.151  Sum_probs=59.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ......+.+.|+.+++.+.+++|+..+.+++..+|+++..++++|.|+.++|+|++|+.-+.++
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4456788999999999999999999999999999999999999999999999999999998876

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.36  E-value=0.015  Score=59.67  Aligned_cols=63  Identities=17%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ++..+...|..++..|++..|+..|.++|+.+|.++.++.+.+.++.+.|++.+|+..+.+++
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            456677788899999999999999999999999999999999999999999999999887653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.34  E-value=0.019  Score=52.74  Aligned_cols=62  Identities=15%  Similarity=0.049  Sum_probs=55.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.-.|..+|..|+|.+|+..|..++...|+   .+.++++.|.||..+|++.+|+..+..+
T Consensus       179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3677888999999999999999999999988776   5789999999999999999999988654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.32  E-value=0.018  Score=54.53  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...|..++..|++..|+..|.++++.+|....+++++|.+|.+.|++.+|+..+.++
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34556666777777777777777777777777777777777777777777777666553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.32  E-value=0.015  Score=62.82  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..+.+.|++.+|+..|.+++.++|+++.+++|.|.++..+|++.+|+.-+.+|
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A  669 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA  669 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5667777888888888888888888888888888888888888888888888888777665

>KOG4340|consensus

Probab=96.31  E-value=0.0064  Score=56.72  Aligned_cols=64  Identities=28%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+..+.-+.+.|.-.|+.|+|.+|+..|+.|+....-++.+-+|.|+||++-|+|..|+...+.
T Consensus       140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE  203 (459)
T ss_pred             CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3455778899999999999999999999999999998999999999999999999999987664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.30  E-value=0.014  Score=64.10  Aligned_cols=59  Identities=14%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...|+.+...|+|.+|+..|.+++.++|+++.+++++|.+|+.+|++.+|+..+.++
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a  521 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL  521 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999988765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.24  E-value=0.025  Score=52.00  Aligned_cols=60  Identities=8%  Similarity=-0.069  Sum_probs=52.4

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQM-FRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~-fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ......|-.+ ++.|+|..|+..|...|...|+.   +.+++-.|.+|+..|+|.+|+..+..+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v  206 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV  206 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456667766 67899999999999999999987   579999999999999999999988764

>PLN02789 farnesyltranstransferase

Probab=96.21  E-value=0.018  Score=54.47  Aligned_cols=50  Identities=8%  Similarity=-0.108  Sum_probs=26.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL  282 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl  282 (296)
                      ++...+..+|..+...|+|.+|+.+|+++|+.+|.+..+|++|+.+..++
T Consensus       140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            34444455555555555555555555555555555555555555554444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.20  E-value=0.026  Score=50.76  Aligned_cols=61  Identities=15%  Similarity=0.038  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +....+.|..++..||+..|..-..+||+.+|++..+|.-||..|.++|+...|-+-+.+|
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            4556677888888888888888888888888888888888888888888877777777665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.16  E-value=0.03  Score=52.34  Aligned_cols=54  Identities=17%  Similarity=0.070  Sum_probs=26.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ..|..+...|+|..|+..|.+++.++|.++.++.+.|.+|+..|++.+|+.-+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~  172 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME  172 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444445555555555555555555444444444444444444444444433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.09  E-value=0.039  Score=45.46  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +......|..++..|+|..|+..|..++...|+.   ..+.++.|.|++..|+|.+|+..+..
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            4455667777788888888888888888766543   35666777777777777777766543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.07  E-value=0.019  Score=62.95  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...|..+++.|+|.+|+..|.+++.++|.++.++.++|.+|..+|++.+|+..+.+|
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a  411 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA  411 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            466889999999999999999999999999999999999999999999999998876

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=95.98  E-value=0.038  Score=41.89  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce---EE--eecccCCcccCCceEEe-eCCEEEEE
Q psy5819          12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY---IF--EKLLLRPIVEEASRIRL-ENNEAEFE   74 (296)
Q Consensus        12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~---~~--~~~L~~~Id~e~S~~~i-~~~~v~i~   74 (296)
                      .+.+...|++.|||+++.+++|.+.+++|.|+..        .|   .|  .+.|...|+++.-+.++ .+|.|.|.
T Consensus         4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            3677899999999999999999999999999862        12   23  55699999999999998 68887775

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=95.96  E-value=0.031  Score=42.74  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=50.8

Q ss_pred             eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----------ce---EE--eecccCCcccCCceEEeeCC-EEEEE
Q psy5819          13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----------NY---IF--EKLLLRPIVEEASRIRLENN-EAEFE   74 (296)
Q Consensus        13 T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----------~~---~~--~~~L~~~Id~e~S~~~i~~~-~v~i~   74 (296)
                      ..+.+.|++.|||+++.+++|.+.+++|.|+..           .|   .|  .+.|...||++.-+.++.++ .|.|.
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            357899999999999999999999999999862           12   12  55699999999999999987 66653

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.95  E-value=0.037  Score=55.72  Aligned_cols=62  Identities=16%  Similarity=-0.029  Sum_probs=56.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|-.+...|++.+|...|.+||.++| ++..|..+|.++...|++.+|+..+.+|
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456677778888899999999999999999999 5889999999999999999999999887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.95  E-value=0.026  Score=53.40  Aligned_cols=60  Identities=15%  Similarity=-0.013  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+...|..++..|+|..|+..|..++...+..    ..++.+.|.+|...|++..|+.-+.+
T Consensus        69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~  132 (389)
T PRK11788         69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQ  132 (389)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3444555555555555555555555555432211    23445555555555555555554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.90  E-value=0.017  Score=35.19  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN  267 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~  267 (296)
                      ..+...|..+...|++..|+..|.++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45677899999999999999999999999884

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.85  E-value=0.038  Score=50.29  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ......++..+-..|-.|-+.|++..|-..|.+|+++.|..+..++|.+..|+-.|++..|..-...|
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a  194 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA  194 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence            34456668889999999999999999999999999999999999999999999999999998765543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.82  E-value=0.03  Score=40.06  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=40.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA  277 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~  277 (296)
                      +.++..+...|..++..|+|.+|+..|++++..+|+++.+..-++.
T Consensus        26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            3367889999999999999999999999999999999887776654

>KOG2003|consensus

Probab=95.75  E-value=0.0069  Score=59.18  Aligned_cols=62  Identities=24%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      --+|..+-++||-.|.+|+|+.|.+.|..||+.+.....+++|-++.+-++|+..+|+.-+-
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999986553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.71  E-value=0.02  Score=40.16  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=33.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA  269 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~  269 (296)
                      ..++..+...|..++..|+|.+|+..|.+++..+|+++
T Consensus        28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            45788999999999999999999999999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.69  E-value=0.062  Score=44.04  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             hHHhHHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q psy5819         208 EEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK  287 (296)
Q Consensus       208 ~~w~~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~  287 (296)
                      ..|........+...            ...+...+..+...|+|..|+..+..+|..+|-+-.+|...-.||..+|++..
T Consensus        47 ~~W~~~~r~~l~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~  114 (146)
T PF03704_consen   47 EEWVEPERERLRELY------------LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAE  114 (146)
T ss_dssp             STTHHHHHHHHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHH
T ss_pred             cHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHH
Confidence            467766554444321            24566777788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy5819         288 AVDDASEV  295 (296)
Q Consensus       288 Ai~D~~~A  295 (296)
                      |+.-+.++
T Consensus       115 A~~~Y~~~  122 (146)
T PF03704_consen  115 ALRVYERY  122 (146)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN02789 farnesyltranstransferase

Probab=95.68  E-value=0.02  Score=54.17  Aligned_cols=66  Identities=8%  Similarity=-0.083  Sum_probs=52.6

Q ss_pred             cCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH--HHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL--HKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~--~~Ai~D~~~A  295 (296)
                      .+......+..+|..+...| ++.+|+..++++|..+|++..++++|+.++.++|++  .+++.-+.+|
T Consensus        66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka  134 (320)
T PLN02789         66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI  134 (320)
T ss_pred             HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence            34455667778888888888 678999999999999999999999999998888874  5666666554

>KOG0376|consensus

Probab=95.58  E-value=0.0047  Score=60.45  Aligned_cols=63  Identities=22%  Similarity=0.298  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+-+++..+++.++|..|+....+||+++|....+|+.||.++++++.|.+|+.|+..+
T Consensus        36 nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~   98 (476)
T KOG0376|consen   36 NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV   98 (476)
T ss_pred             cceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence            345667788889999999999999999999999999999999999999999999999998754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.54  E-value=0.13  Score=42.91  Aligned_cols=63  Identities=14%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ...+..+...|...++.|+|..|+..+......-|-   -..+.++.+-+|++.++|..|+.-+.+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r   72 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR   72 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            446889999999999999999999999999887774   458899999999999999999987653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.53  E-value=0.018  Score=51.60  Aligned_cols=67  Identities=24%  Similarity=0.213  Sum_probs=57.9

Q ss_pred             CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +...+..|+.+.-.|-=+...|+|+.|.+.|+..++++|.+--++.||+.+++--|+|.-|..|+.+
T Consensus        92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~  158 (297)
T COG4785          92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA  158 (297)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence            4445556788888888889999999999999999999999999999999999999999999988753

>KOG0551|consensus

Probab=95.52  E-value=0.025  Score=53.41  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ++.-+-+++...+--|||..||+..++|+.++|....+|..-|.|++.|..+..|+.-|..
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee  178 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE  178 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence            4667889999999999999999999999999999999999999999999999999988864

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.50  E-value=0.051  Score=57.10  Aligned_cols=64  Identities=16%  Similarity=0.022  Sum_probs=51.3

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.++..+...|..+...|++..|+..|.+|+.++|++..+++.+|.+++.+|+|..|...++.+
T Consensus       390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3346677788888888888888888888888888888888888888888888888888777654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.50  E-value=0.035  Score=50.61  Aligned_cols=56  Identities=14%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK  287 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~  287 (296)
                      ..++..+...|..+.+.|++..|+.+|.+||+++|++..+..+.+.+++.+|++.+
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~  198 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE  198 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence            35678889999999999999999999999999999766555555555555555554

>KOG1126|consensus

Probab=95.49  E-value=0.019  Score=58.08  Aligned_cols=86  Identities=16%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             HHhHHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------------------
Q psy5819         209 EWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-------------------  269 (296)
Q Consensus       209 ~w~~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-------------------  269 (296)
                      .|-.+..-+...+.-+.  +.....+|+.|...||.+--+++++.||.+|.+||.++|.++                   
T Consensus       397 LWHLq~~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a  474 (638)
T KOG1126|consen  397 LWHLQDEVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA  474 (638)
T ss_pred             HHHHHhhHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH
Confidence            46655443343332221  222445789999999999999999999999999999999532                   


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         270 ---------------CLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       270 ---------------~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                                     .+|+-.+.+|++.+++..|...+.+|+
T Consensus       475 ~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~  516 (638)
T KOG1126|consen  475 MKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV  516 (638)
T ss_pred             HHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence                           677778888888888888888877764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.45  E-value=0.033  Score=34.98  Aligned_cols=27  Identities=26%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +...|+.+++.|+|+.|+.+|.++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567899999999999999999996644

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.44  E-value=0.098  Score=42.40  Aligned_cols=60  Identities=20%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ...+...|..+...|++++|+..+++++.-.|+   +..+....|.|...+|++.+|+.-+-.
T Consensus        38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            456667788888888888888888888877676   777777788888888888888776543

>smart00028 TPR Tetratricopeptide repeats

Probab=95.39  E-value=0.033  Score=31.57  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN  267 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~  267 (296)
                      .+...|..++..|+|..|+..|.++|+++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4567888889999999999999999988774

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1125|consensus

Probab=95.36  E-value=0.034  Score=55.60  Aligned_cols=65  Identities=22%  Similarity=0.219  Sum_probs=60.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ..+|...-..|--|+-.|+|+.|+.||..||...|++..+|+..++..-.-.+..+||..|.+|+
T Consensus       427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999874

>KOG2076|consensus

Probab=95.36  E-value=0.067  Score=55.96  Aligned_cols=61  Identities=21%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +...++.-|.-.-+.|++.+|+-||++||.++|.+-.++.+|+.-|.++|++..|+.-+.+
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~  266 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ  266 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            3467888898889999999999999999999999999999999999999999999876654

>KOG1126|consensus

Probab=95.33  E-value=0.049  Score=55.18  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=54.1

Q ss_pred             CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+..+...+-.-|..+++.|..+.|+..|.+|+.++|.++.+.++||..++.+++|.+|+.-..+
T Consensus       516 ~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  516 VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            3344555666677788888888888888888888888888988999999999999999998876654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.29  E-value=0.084  Score=55.52  Aligned_cols=62  Identities=10%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+...|++.+|+..|.++|.++|.++.++.+.+.+++..|++.+|+.-+.++
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~  109 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL  109 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34456777777777777877888888777777777777777777777777777777766654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.25  E-value=0.034  Score=33.66  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         269 ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.+++++|.+|+.+|+|.+|+..+.+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            467899999999999999999999886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.10  E-value=0.078  Score=53.38  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .-.+..+-..|+|..|+...++||...|..+.+|.-+|-++-+.|++.+|....+.||
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar  255 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR  255 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4456667789999999999999999999999999999999999999999999998876

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785|consensus

Probab=95.06  E-value=0.046  Score=52.18  Aligned_cols=64  Identities=22%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++.+...+. .|-.+|..|||++|++.|+-+..-+.-++.+..|.|-|++-||.|.+|-.-..+|
T Consensus        54 EEE~~~~lW-ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   54 EEEDSLQLW-IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             hhhHHHHHH-HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            333333333 4778899999999999999999877778899999999999999999997765544

>KOG2796|consensus

Probab=94.95  E-value=0.029  Score=51.64  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +-.-+++.+-.+..+.||..|...|++.+..+|.++.+-+|.|+|.+-+|+...|+.-.+.+
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~  312 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM  312 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888889999999999999999999999999999999999999999999887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.92  E-value=0.13  Score=54.59  Aligned_cols=65  Identities=11%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .......+...|..+...|+|..|+..|.++++.+|+++.++.-.+..|..++++.+|+..+.++
T Consensus        98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l  162 (822)
T PRK14574         98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL  162 (822)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            34456667777888999999999999999999999999999999999999999999999988765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.90  E-value=0.039  Score=50.29  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+..-|..++..|++..|+..|.++++.+|.++..+.+-|.++...|++.+|+.-..+|
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34556778999999999999999999999999999999999999999999999998755443

>KOG1128|consensus

Probab=94.90  E-value=0.049  Score=55.89  Aligned_cols=67  Identities=18%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.+.-....+...|..+.+.++++.|+.+|+.++.++|++...++|.|.+|+++|+-.+|-.-...|
T Consensus       513 ~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  513 EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence            3445567788899999999999999999999999999999999999999999999988887655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.68  E-value=0.14  Score=50.50  Aligned_cols=63  Identities=24%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ...++-.+--.|.-++..+++.+|++.|.+++.++|..+.+..|.|.+++++|++.+||.-..
T Consensus       336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~  398 (484)
T COG4783         336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN  398 (484)
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence            445677777889999999999999999999999999999999999999999999999987654

>KOG1840|consensus

Probab=94.58  E-value=0.087  Score=52.83  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +.-++.-|..+...++|.+|+..|.+|+.+        +|.-+..+.|.|..|++.|+|.+|...|..|.
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            455667899999999999999999999965        44567999999999999999999999998873

>KOG1155|consensus

Probab=94.44  E-value=0.13  Score=50.62  Aligned_cols=65  Identities=15%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------------------------------ChHHHHHHH
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----------------------------------LACLYSNRA  276 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----------------------------------~~~ly~NRA  276 (296)
                      +......+---|-++...+|-.+||.+|..||+++|.                                  ++.++.-.+
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG  439 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG  439 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3444556666788888899999999999999998884                                  446666677


Q ss_pred             HHHHHcCCHHHHHHHHHhc
Q psy5819         277 AAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       277 ~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .||.++++..+||.-+..|
T Consensus       440 ~CY~kl~~~~eAiKCykra  458 (559)
T KOG1155|consen  440 ECYEKLNRLEEAIKCYKRA  458 (559)
T ss_pred             HHHHHhccHHHHHHHHHHH
Confidence            8999999999998877665

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=94.41  E-value=0.3  Score=42.14  Aligned_cols=68  Identities=19%  Similarity=0.322  Sum_probs=53.6

Q ss_pred             eCC-EEEEEEEeCCCCCCc-ceEEee--ccEEEEeecc-eEEeecccCCcccCCceEEeeCCEEEEEEeecCcc
Q psy5819          13 TPS-KVFITVPLYNVPTHK-VDVFTS--ESYIKLHYGN-YIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQA   81 (296)
Q Consensus        13 T~~-~V~i~V~l~~~~~~~-~~V~~~--~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~   81 (296)
                      +++ +++|...||||...+ ++|.+.  ...|.+.... |+=.+.|..+ +++.-.+++.++.|+|.|.+.+..
T Consensus        99 ~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~~  171 (177)
T PF05455_consen   99 RDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNNGILEIRIRRTEES  171 (177)
T ss_pred             cCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeCceEEEEEeecCCC
Confidence            445 789999999998777 777776  5666776654 6568888888 467678999999999999998764

>PRK10941 hypothetical protein; Provisional

Probab=94.36  E-value=0.2  Score=46.20  Aligned_cols=58  Identities=19%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+.+.-..+.+.++|..|+.+....+.++|+++.-+--||.+|.+||.+..|+.|.+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~  240 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY  240 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            3445556778999999999999999999999999999999999999999999999864

>KOG2076|consensus

Probab=94.35  E-value=0.16  Score=53.21  Aligned_cols=59  Identities=12%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ...+...||.+|..|++..|...+.++|+++|.++.+|+-.|.||-.+|+..+|+.-..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l  197 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL  197 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999876443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=94.29  E-value=0.071  Score=37.68  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy5819         232 ENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCP  266 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p  266 (296)
                      ...+..+...|..++..| +|.+|+..|.+||+++|
T Consensus        34 p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   34 PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            445788999999999999 79999999999999998

...

>KOG2002|consensus

Probab=94.25  E-value=0.068  Score=56.41  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=57.2

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+.-.|..++.-.|..|||.+|+.+|..||.++|.. +....-++.|+++||+...|+..+.+|
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            345567789999999999999999999999999999963 456677899999999999999888766

>KOG0545|consensus

Probab=94.25  E-value=0.12  Score=47.06  Aligned_cols=58  Identities=24%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.+-...++..|+|.++++..+..|+..|.+..+|+.||-+|...-|..+|-+|+..+
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v  290 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV  290 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            3455667789999999999999999999999999999999999999999999998765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.11  E-value=0.22  Score=46.50  Aligned_cols=62  Identities=10%  Similarity=-0.056  Sum_probs=53.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~----~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|..++..|++++|+..|.+++...|..+    .+|.++|.+++.+|++.+|+..+..+
T Consensus       147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            466778889999999999999999999999887432    45778999999999999999888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.02  E-value=0.25  Score=40.64  Aligned_cols=61  Identities=13%  Similarity=0.017  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +......|..++..|+|+.|+..+.. +.-.+..+.++.-+|.+|+..|++.+|+.-+.+|.
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            34555678999999999999999965 44455677888899999999999999999998874

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.95  E-value=0.16  Score=44.18  Aligned_cols=54  Identities=17%  Similarity=0.121  Sum_probs=41.4

Q ss_pred             CCCChHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         231 EENNPDWVKAKGDQMFRDG----------NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g----------~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      +..+++.|..=|..++...          -|.+||.+|.+||.++|+...++.|.+.||..++.
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            3445788888888775432          36889999999999999999999999999998765

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555|consensus

Probab=93.76  E-value=0.33  Score=40.37  Aligned_cols=64  Identities=14%  Similarity=0.124  Sum_probs=56.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+.+++..+--+|+-.+|+...++|+++....    ..+|..|+..|-.+|+-+.|-.|+..|
T Consensus        74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen   74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA  141 (175)
T ss_pred             ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence            3567889999999999999999999999999997643    378999999999999999999999765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.75  E-value=0.14  Score=30.47  Aligned_cols=31  Identities=13%  Similarity=0.249  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN  267 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~  267 (296)
                      .+...|..+++.|++..|+..|.+.|...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4667888888999999999999999988875

>KOG4151|consensus

Probab=93.74  E-value=0.032  Score=57.57  Aligned_cols=68  Identities=25%  Similarity=0.408  Sum_probs=58.5

Q ss_pred             CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHH--cCCHHHHHHHHHhc
Q psy5819         228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLA--LNNLHKAVDDASEV  295 (296)
Q Consensus       228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lk--l~~~~~Ai~D~~~A  295 (296)
                      +......+..++..||.+|..++|.+|...|..++.+.|.    .+.++.|++.||+.  +|+|..++.+|+.|
T Consensus        46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la  119 (748)
T KOG4151|consen   46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELA  119 (748)
T ss_pred             hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhh
Confidence            3333445678899999999999999999999999999884    67999999999986  77899999999876

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.64  E-value=0.39  Score=43.85  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=54.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ...+..|.++|...++.|+|..|+..|.......|-   ...+....+.+|++-++|..|+...++
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr   96 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDR   96 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            345788999999999999999999999999987774   457888899999999999999887653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.62  E-value=0.26  Score=52.34  Aligned_cols=62  Identities=8%  Similarity=-0.127  Sum_probs=51.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.....+|-..+++|+|..|+..|.++++.+|.++....-.+.++..+|++.+|+..|.+|
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka   94 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY   94 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            46778889999999999999999999999999988533337777888888888888888776

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.59  E-value=0.32  Score=44.70  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=37.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+..+.=.|..+|.+|+|..|...|-.+++-.|+   -+..++..|.|...+|+-+.|..-+.+
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~q  240 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQ  240 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3444444566666666666666666666665553   346666666666666666666555443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.54  E-value=0.62  Score=37.69  Aligned_cols=60  Identities=13%  Similarity=-0.059  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+.+.|..+-..|+..+|+..|.+||......   ..++.++|.++..+|++.+|+.-.+.+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~   64 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA   64 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457788999999999999999999999976543   579999999999999999999876653

>KOG1128|consensus

Probab=93.49  E-value=0.081  Score=54.35  Aligned_cols=56  Identities=14%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|+-.+.+++|.+|..++..+++++|-....|++++.|.+++++++.|+.++..+
T Consensus       490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  490 SLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             hhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            33444566799999999999999999999999999999999999999999999765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.48  E-value=0.16  Score=47.37  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV  289 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai  289 (296)
                      .++..+...+..++..|+|.+|...+.+|+..+|.++.++.|.+.|...+|+..++.
T Consensus       199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            356777888888899999999999999999999999999999999999998884443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174|consensus

Probab=93.44  E-value=0.19  Score=48.89  Aligned_cols=78  Identities=21%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             HHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         217 ARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       217 a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ++.++.+....+..++.....|.-+|+.+...|+.++|+-+|..|+.+.|..-.+|--.--||+..|.+.+|..-++.
T Consensus       316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            355555555556666777788999999999999999999999999999999999999999999999999999876654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.35  E-value=0.14  Score=47.19  Aligned_cols=62  Identities=19%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--C----ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRD-GNYLGAVSAYSHGLQLCP--N----LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~-g~y~~Ai~~Yt~AI~~~p--~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+... |++..|+.+|.+|+.+-.  +    -..++.+-|.++..+|+|.+|+..+.++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            356677777777777 899999999999998732  1    2478889999999999999999988753

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=0.48  Score=44.07  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------------------------------------HH
Q psy5819         229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-------------------------------------CL  271 (296)
Q Consensus       229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-------------------------------------~l  271 (296)
                      ..+..+++-+--.|-.++..|++..|..+|.+|+++.|+++                                     ..
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            34555677788889999999999999999999998887644                                     55


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Q psy5819         272 YSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       272 y~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      .+-.|..++..|+|.+|+....
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq  251 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQ  251 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHH
Confidence            5556777777888888877654

>KOG1308|consensus

Probab=93.22  E-value=0.041  Score=52.05  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...+..+..+|..+.+.+....||..|..||.++|+.+.-|--|..++-.||+|.+|.+|+..|
T Consensus       140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a  208 (377)
T KOG1308|consen  140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA  208 (377)
T ss_pred             ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence            344455677888899999999999999999999999999999999999999999999999999998765

>KOG4814|consensus

Probab=93.16  E-value=0.16  Score=51.65  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|.+.+..+|+..+|..|+..|...+..-|.      ++.+..|.+.||++|.+.+.|++.+..|
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA  420 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEA  420 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35678999999999999999999999987664      5788999999999999999999887665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.03  E-value=0.4  Score=41.97  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcC
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALN  283 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~  283 (296)
                      ...+..+...|..+|+.|+|..|+..|...|+..|..+   .+++.+|.|++.+.
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            44567788999999999999999999999999999754   68889999998764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.98  E-value=0.36  Score=39.34  Aligned_cols=58  Identities=14%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....|...+..|-|.+|...|.+|+...-.            ++-||.-.|.++..||+|.+|+.-+..|
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a   81 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA   81 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            346678888999999999999999987543            5689999999999999999999888765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=92.96  E-value=0.46  Score=43.02  Aligned_cols=49  Identities=14%  Similarity=0.116  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALN  283 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~  283 (296)
                      .......|..+|+.|+|.+|+..|.+.|+..|++   +.+++.+|.|+..++
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence            3445788999999999999999999999999875   478889999987765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.68  E-value=0.22  Score=30.05  Aligned_cols=26  Identities=15%  Similarity=0.116  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         270 CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+|.++|.+|..+|++.+|+..+.+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a   27 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57899999999999999999998876

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.60  E-value=0.44  Score=43.02  Aligned_cols=62  Identities=18%  Similarity=0.061  Sum_probs=35.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .....+..++--+.+.|+-+.|-..|.+||.++|++..+++|=+.=....|.|.+|..-+++
T Consensus        67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~  128 (250)
T COG3063          67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER  128 (250)
T ss_pred             ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence            33445555566666666666666666666666666555555554444444444444444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.58  E-value=0.38  Score=51.35  Aligned_cols=59  Identities=5%  Similarity=-0.070  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|...|..|=+.|++..|+..|.++|+++|+++.+.+|-|..|... +..+|+.-+.+|
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999 999999888776

>smart00028 TPR Tetratricopeptide repeats

Probab=92.47  E-value=0.18  Score=28.30  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         270 CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+|.++|.||..+|++..|+..+..+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~   27 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKA   27 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            57889999999999999999988765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK11906 transcriptional regulator; Provisional

Probab=92.40  E-value=0.34  Score=47.75  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             HHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         216 EARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       216 ~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .|++++..+       ..+|..+.-.|....-.|++..|+..+.+|+.++|+.+.+|+-+|..+...|+...|+....+|
T Consensus       326 ~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        326 LLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455555443       3457888889998888889999999999999999999999999999999999999999988875

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=92.07  E-value=0.85  Score=35.15  Aligned_cols=64  Identities=9%  Similarity=0.032  Sum_probs=52.2

Q ss_pred             eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce-----EEeecccCCcccCCceEEee-CCEEEEEE
Q psy5819          12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY-----IFEKLLLRPIVEEASRIRLE-NNEAEFEL   75 (296)
Q Consensus        12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~-----~~~~~L~~~Id~e~S~~~i~-~~~v~i~L   75 (296)
                      -+.+.-.|.+.+.|.++.+++|.+.++.|.|+..        .|     .-...|...||++.-+..+. ++.|.|.+
T Consensus        12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea   89 (91)
T cd06480          12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA   89 (91)
T ss_pred             CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence            3566778999999999999999999999999762        12     22566999999999999998 78887764

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=91.87  E-value=0.4  Score=33.55  Aligned_cols=46  Identities=17%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRA  276 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA  276 (296)
                      .+.++......|..+++.|+|.+|...+.+++..+|+++.++.-+|
T Consensus        21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen   21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3446788889999999999999999999999999999876665554

...

>KOG1130|consensus

Probab=91.67  E-value=0.34  Score=47.30  Aligned_cols=58  Identities=19%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDD  291 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D  291 (296)
                      +--.|-..|..+|+.|+|...+..|..||....++    ..+|+..+.+|+-|++|.+|+..
T Consensus        16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y   77 (639)
T KOG1130|consen   16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY   77 (639)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence            35667889999999999999999999999987764    47899999999999999999863

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.58  E-value=0.53  Score=45.55  Aligned_cols=53  Identities=9%  Similarity=0.017  Sum_probs=48.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      .+.-+...|+|..|+..|.++++.+|+++.++.-.+.+|+..|+|.+|+.-+.
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~  211 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP  211 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            48888999999999999999999999999999999999999999999985443

>KOG2002|consensus

Probab=91.38  E-value=0.64  Score=49.40  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++..+|..+-..+|.+|-.|||..++..+-.||...-..   +..|++.|-||..+|+|++|...+-+|
T Consensus       264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4566789999999999999999999999999999876544   455999999999999999999888765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.35  E-value=0.39  Score=43.25  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +++++++ +.-+.++|+-+=..|-+.-|-..|+++|.+.|..+..|+-.+.-++.-|+|+.|.+.++.+
T Consensus        58 ~l~~eeR-A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          58 ALTDEER-AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             cCChHHH-HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence            4444444 6788999999999999999999999999999999999999999999999999999887653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.31  E-value=0.88  Score=43.99  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=55.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|.-+++.|+|..|...|.+++...|++.. |.-.|.++.++|+..+|..-+.++
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456788889999999999999999999999999998765 446899999999999998877654

>KOG1155|consensus

Probab=91.17  E-value=1  Score=44.55  Aligned_cols=63  Identities=16%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +.++.-+-..|+.+-+.++.++||.||..||..+..+..+|...|..|-.++++.+|..-+.+
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999876654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.98  E-value=0.61  Score=35.68  Aligned_cols=52  Identities=23%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         244 QMFRDGNYLGAVSAYSHGLQLCPN---------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       244 ~~fk~g~y~~Ai~~Yt~AI~~~p~---------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+.|||.+|+..+.+.+.....         ...+..|.|.++..+|++.+|+..+..|
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA   67 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA   67 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            346899999998888888765432         2467889999999999999999988876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.94  E-value=0.39  Score=29.96  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         271 LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       271 ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +|.|.|.+|..+|+|.+|+.-+.+|
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5789999999999999999998874

>TIGR00540 hemY_coli hemY protein

Probab=90.81  E-value=0.82  Score=44.30  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             CCCCh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNP--DWVKAKGDQMFRDGNYLGAVSAYS--HGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~--~~lk~~Gn~~fk~g~y~~Ai~~Yt--~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++  ..+-..|--+++.|+|..|...|.  .++...|+... +...|.++.++|+..+|.+-+.++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34456  778889999999999999999999  68888887665 558899999999999998877664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.72  E-value=1.7  Score=30.02  Aligned_cols=41  Identities=15%  Similarity=0.036  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAA  278 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~  278 (296)
                      +.-.+-.+++.|+|..|..+...+|+++|++..+..-+..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            45567788999999999999999999999987666554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.70  E-value=1.8  Score=32.56  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      -...++|-.+|.+.+..+|+..+.++|+..++..   .++.-.+.+|.-.|+|.++++-+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467899999999999999999999999887654   55556778889999999988654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.66  E-value=1.2  Score=38.42  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -..+.+.|+-+++.|++..|+.+|.++...+..   ...++++...+.+-+++|..+....++|
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            466889999999999999999999999987654   3466677777777788887777666654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1130|consensus

Probab=90.42  E-value=0.1  Score=50.70  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+-+.||.+|-.|+|++||..-..-|.+...      .-.+|+|.+.||+-+|+|.-|++.+..+
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            345667899999999999999999998887654      2379999999999999999999988654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.11  E-value=0.78  Score=28.54  Aligned_cols=30  Identities=13%  Similarity=0.232  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +..+.+.|..++..|+|.+|+..|.+++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345677888888889999999988888865

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.81  E-value=0.25  Score=35.78  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         268 LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       268 ~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.+|.|.|.||..+|+|.+|+..+.+|
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~a   31 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKA   31 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678999999999999999999999876

...

>KOG3785|consensus

Probab=89.65  E-value=0.55  Score=45.09  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA  288 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~A  288 (296)
                      -...+...|..-.|++||..|++.|.-+|+...+-.+.|+||++|.-|+-+
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvs  204 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVS  204 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhH
Confidence            345566677778899999999999999999999999999999999887654

>KOG1129|consensus

Probab=89.59  E-value=0.24  Score=47.00  Aligned_cols=63  Identities=17%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.+.+-..|..+|-.++-+-|+.+|.+.|.+.-.++.+|+|.++|++--++|+-++.-+.+|
T Consensus       322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            344556667888899999999999999999999999999999999999999998888776655

>KOG2003|consensus

Probab=89.55  E-value=0.089  Score=51.68  Aligned_cols=52  Identities=19%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV  289 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai  289 (296)
                      .+.+.|-.+.+.|.|..||+.|..+++.+|+.... +|...|++-.|+-++--
T Consensus       278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmk  329 (840)
T KOG2003|consen  278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMK  329 (840)
T ss_pred             HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHH
Confidence            34455555666666666666666666666654333 35666666666654433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=88.45  E-value=2.3  Score=39.05  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-------ACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-------~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ..-+...|.-+.+.|+|.+|+..|.+.+...-.+       ...|++..+|||.+|++..|-..++.
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~  221 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER  221 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556677888899999999999999998754321       15678899999999999888665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.29  E-value=0.91  Score=28.24  Aligned_cols=27  Identities=26%  Similarity=0.158  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         269 ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.++.|.|.+|..+|+|.+|+.-+.+|
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence            467899999999999999999888765

>KOG1840|consensus

Probab=88.09  E-value=1.6  Score=43.99  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--------PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--------p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..-+..+.+.|..+...+.|.+|+..|.+++++-        +.-+..|.|.|.+|+++|+|.+|..-+.+|
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            3347788899999999999999999999998752        245689999999999999999998877665

>TIGR00540 hemY_coli hemY protein

Probab=88.08  E-value=1.6  Score=42.27  Aligned_cols=56  Identities=11%  Similarity=0.055  Sum_probs=50.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ...+.-++..|+|..|+..+...++..|+++.++.-.+.+|+..|+|..|+.....
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~  212 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN  212 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999998876554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4642|consensus

Probab=88.04  E-value=1  Score=41.03  Aligned_cols=65  Identities=12%  Similarity=0.045  Sum_probs=59.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..-+..+.+++..+|+..+|..+.....+||.++|+....++-.++|.+....|..||....+|
T Consensus        40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            44557889999999999999999999999999999999999999999999999999999887765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.85  E-value=0.64  Score=27.48  Aligned_cols=25  Identities=12%  Similarity=0.114  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         271 LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       271 ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++++.|.||.++|++.+|+..+..+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~   26 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRL   26 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6789999999999999999988754

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.76  E-value=2  Score=35.86  Aligned_cols=50  Identities=20%  Similarity=0.134  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      +..+..++..++..|+|+-|+...+.++..+|++..+..-+|.++.++|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999988875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.54  E-value=2.6  Score=38.75  Aligned_cols=60  Identities=15%  Similarity=0.162  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+.+.+-.+++.|+|..|...|..-|+.-|+.   +.+++=.+.|++.+|+|..|..-+..
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~  203 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFAR  203 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHH
Confidence            4558999999999999999999999999999974   47888899999999999999877654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.52  E-value=1  Score=41.54  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +...=+.+...+++..|..+-.+.|.++|.++.-.--||.+|.++|.+.-|+.|.+.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~  240 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY  240 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence            334445667899999999999999999999999999999999999999999999875

>KOG3247|consensus

Probab=87.31  E-value=0.37  Score=46.69  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=68.6

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecceEEeecccCCcccCCce---EEeeCCEEEEEEeecCc
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASR---IRLENNEAEFELIKSEQ   80 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~~~~~~~L~~~Id~e~S~---~~i~~~~v~i~L~K~~~   80 (296)
                      +.|.+.-+|.++.++|.|+.|-.+...+.+....+.+.++++||.+.+.+.+.+-.+...   +-..++.+.|.+.|..+
T Consensus         2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~~~   81 (466)
T KOG3247|consen    2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKFHP   81 (466)
T ss_pred             CCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCCCc
Confidence            468899999999999999999667788888888888888889999888888877665332   45567899999999998


Q ss_pred             cc-cccc
Q psy5819          81 AM-WDEK   86 (296)
Q Consensus        81 ~~-W~~L   86 (296)
                      ++ .+-|
T Consensus        82 ~e~F~~L   88 (466)
T KOG3247|consen   82 GEHFSDL   88 (466)
T ss_pred             cccccch
Confidence            86 7766

>KOG2376|consensus

Probab=87.30  E-value=2.5  Score=42.91  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CChHHHHHHHHHHHHcCC
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP-------------------------------NLACLYSNRAAAHLALNN  284 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-------------------------------~~~~ly~NRA~~~lkl~~  284 (296)
                      ..+--+|..+|+.|+|++|+..|...++-+.                               +...+++|+|-.++..|+
T Consensus       111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence            3566789999999999999999988864322                               145899999999999999


Q ss_pred             HHHHHHHHHhc
Q psy5819         285 LHKAVDDASEV  295 (296)
Q Consensus       285 ~~~Ai~D~~~A  295 (296)
                      |..|++-...|
T Consensus       191 y~qA~elL~kA  201 (652)
T KOG2376|consen  191 YNQAIELLEKA  201 (652)
T ss_pred             HHHHHHHHHHH
Confidence            99999887766

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=87.01  E-value=1.8  Score=43.00  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+-++..+|.-+...|+.+.|+..|++|+.....    ...++..++-||+-+.+|.+|...+..
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            456889999999999999999999999999954433    358899999999999999999987754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3060|consensus

Probab=86.95  E-value=2.6  Score=38.76  Aligned_cols=53  Identities=11%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      ..+++.+.+.++-|+..|+|..|+-||.+.|-++|.++.++...|-.++-+|-
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            34678899999999999999999999999999999999998888888886554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.56  E-value=1.9  Score=40.97  Aligned_cols=62  Identities=15%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-CLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      .+....-.-.|+.+...|+|++|+..|..+++.||... ....-...||-++|+..+.+.=..
T Consensus       211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            33344456679999999999999999999999999864 555567889999999988765433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.31  E-value=2.5  Score=26.70  Aligned_cols=33  Identities=12%  Similarity=0.207  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCC
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYS--HGLQLCPNL  268 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt--~AI~~~p~~  268 (296)
                      +.+..-|-.++..|+|++|+..|+  -+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            457778999999999999999955  777777643

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.82  E-value=4.7  Score=32.22  Aligned_cols=61  Identities=21%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...+..++..+++..|+..|..++...+. ....+.+.+.++...+.+..|+..+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  228 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA  228 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            455555666667777888888888888887777 5777778888888888777777766543

>KOG1156|consensus

Probab=85.69  E-value=1.4  Score=45.11  Aligned_cols=58  Identities=10%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD  290 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~  290 (296)
                      .+.-=+---|--+-..++|.+||.||..|+.++|+|..++...|.-..+|++|.....
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            3344455667777778999999999999999999999999999999999999887654

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.68  E-value=2.4  Score=31.57  Aligned_cols=31  Identities=19%  Similarity=0.406  Sum_probs=26.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      .+..+..+|..+=+.|+|.+|+.+|.+||..
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3567888899999999999999999999853

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=85.24  E-value=5  Score=32.02  Aligned_cols=51  Identities=25%  Similarity=0.333  Sum_probs=33.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         244 QMFRDGNYLGAVSAYSHGLQLCP---NLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       244 ~~fk~g~y~~Ai~~Yt~AI~~~p---~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .++..|++..|+..|.+++..+|   .....+.+++..+...+++..|+..+..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            56667777777777777766555   3555666666666666677777666554

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.05  E-value=1.4  Score=32.78  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=26.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      .+..+-.++-.+=+.|+|.+||.+|+.||++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4567778888999999999999999999864

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=84.81  E-value=1.1  Score=44.17  Aligned_cols=33  Identities=9%  Similarity=-0.091  Sum_probs=30.7

Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         264 LCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       264 ~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+|+++.+++|++.+|+++|+|.+|+..|++|+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL  102 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL  102 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            588999999999999999999999999998873

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=84.51  E-value=5  Score=39.12  Aligned_cols=61  Identities=15%  Similarity=0.102  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      |+...-.+..++..++..+|+....++|..+|.++.++.--|..+++.++|..|+.-+.+|
T Consensus       200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a  260 (395)
T PF09295_consen  200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA  260 (395)
T ss_pred             CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4455556788888899999999999999999999999999999999999999999888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=84.29  E-value=3  Score=42.08  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         234 NPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~---y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      .+-.+.-+|..++..++   +..|+.+|.+||+++|+++.+|.-+|.||.....
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~  391 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS  391 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Confidence            56778889999987766   8899999999999999999999999999976543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.22  E-value=1.6  Score=40.57  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             HHHHHHHH--HHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQM--FRDG--NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~--fk~g--~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +...+..+  +..|  .|..|.-.|.......+..+.+++..|.|++.+|+|.+|...+..|
T Consensus       166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a  227 (290)
T PF04733_consen  166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA  227 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44444444  3344  5999999999988777788899999999999999999999988766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=84.17  E-value=1.6  Score=30.13  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         271 LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       271 ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +++..|.+|+++|+|..|...|+.+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~l   27 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDAL   27 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5677999999999999999998764

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.81  E-value=2.9  Score=29.97  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +..+..+|-.+=+.|+|..|+.+|..||..
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            456677888888899999999999999854

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.66  E-value=2.7  Score=26.95  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      -+-..|...+-.++|.+|+..|.+||++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3455688888899999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1127|consensus

Probab=82.62  E-value=1.1  Score=47.90  Aligned_cols=59  Identities=17%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+-.+|--+...|++.+||..+..|++.+|.+..++.-.+.+|...|.|..|+.-+++|
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            34448888888999999999999999999999999999999999999999999888776

>KOG3081|consensus

Probab=81.98  E-value=5.3  Score=37.02  Aligned_cols=60  Identities=15%  Similarity=0.080  Sum_probs=53.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      ..+.-+..+++.++..|+|.+|......||.-+++++..+.|.-.|-+.+|...++..+.
T Consensus       205 ~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  205 PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            346677888899999999999999999999999999999999999999999987776654

>KOG3060|consensus

Probab=81.96  E-value=6.8  Score=36.10  Aligned_cols=46  Identities=20%  Similarity=0.106  Sum_probs=24.0

Q ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         248 DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       248 ~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      +|.-..||...+.-++.-+.++.++--.|..|+.+|+|.+|+--+.
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            3333344444444444444455666666666666666666655443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=81.71  E-value=4.6  Score=32.33  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGN-----------YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~-----------y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +.-+..+|.-+++...           ...|+.+|+++..+.|..+.++++.|.-+-...-|.+|+.-|.+++
T Consensus        33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL  105 (111)
T ss_pred             HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            3567778888876442           4789999999999999999999988888777788999999888763

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=80.76  E-value=3.4  Score=40.60  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=41.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC-------------Ch-----HHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         241 KGDQMFRDGNYLGAVSAYSHGLQLCPN-------------LA-----CLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-------------~~-----~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .|..+|++|+|..|+..|..||+++.+             +.     -+--..+.|||++++++-|+...-+
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            467789999999999999999988653             11     2334578899999999998876543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.58  E-value=5.4  Score=29.23  Aligned_cols=30  Identities=27%  Similarity=0.275  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +..+..+|...=..|+|.+|+.+|..||..
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            567788888888999999999999999854

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0546|consensus

Probab=80.52  E-value=0.56  Score=44.70  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=28.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      ....+..++.|+..|+.++|..|+..|.++++.
T Consensus       219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~  251 (372)
T KOG0546|consen  219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRY  251 (372)
T ss_pred             hhhhhhhhccchhhhhhccHhHHHHHHHHHhhh
Confidence            334577899999999999999999999999854

>KOG1174|consensus

Probab=80.18  E-value=3.5  Score=40.44  Aligned_cols=61  Identities=10%  Similarity=0.049  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.-.|..+|-.++|..|+..-.++|..+|.+..+|.-.+...+.+|++.+|+-.+..|
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            4455667888899999999999999999999999999999999999999999999888765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=80.08  E-value=7  Score=38.84  Aligned_cols=63  Identities=13%  Similarity=0.104  Sum_probs=58.4

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...+..+-..|..|.++.|....+..|..-|+|+.+..-++..++..+++.+|++-+.+|
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka  366 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKA  366 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            446678889999999999999999999999999999999999999999999999999988775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-11
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	6e-10
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-10
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	1e-09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-06
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	7e-06
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	7e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-05
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-04
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	9e-04
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	9e-04

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K KG++ F+ G+Y  A+  Y+  ++  P  A LYSNRAA    L    +A+DD   
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K KG++ F+ G+Y  A+  Y+  ++  P  A LYSNRAA +  L     A+ D  E
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K KG++    GN   A+  YS  ++L P+   LYSNR+AA+    +  KA +D  +
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           + +G + F   ++  AV AY+  ++  P  A  YSNRAAA   L +  +A+ D ++
Sbjct: 8   RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 65.8 bits (161), Expect = 7e-14
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K +G+ +F+ G Y  AV  Y   +   P     YSN+A A + L    +A+    +
Sbjct: 8   KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 66.2 bits (162), Expect = 9e-14
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K +G+++F    Y  A + Y   +   P +A  Y+NRA  +L +    +A+ D   
Sbjct: 13  KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K++G+       Y  A+  Y+  L + P      SNRAAA+ A     KA +DA  
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K + +  F+  +Y  A+  YS  ++L P+ A  Y NR+ A+L       A+ DA+ 
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 230 PEENNP---DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH 286
             E +    + +K +G++  +  N+  AV  Y   ++L P  A  + NRAAA+  L N  
Sbjct: 4   GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63

Query: 287 KAVDDASE 294
            AV D   
Sbjct: 64  GAVQDCER 71

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN 283
           +P + KA    G  +     ++ AV+ Y   L+L P+     SN   A L L 
Sbjct: 76  DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
           GNY GAV      + + P  +  Y     A  +LN   +AV    + 
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCP---NLACLYSNRAAAHLALNNLHKAVDDASEV 295
           + +G+++F+ G+Y GA++AY+  L L     + A L+ NRAA HL L +  KA  +AS+ 
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K +G+++F    Y  A + Y   +   P +A  Y+NRA  +L +    +A+ D   
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K  G+  ++  ++  A+  Y    +L P      +N+AA +    + +K  +   +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 10  WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRI 64
           W QT S+V IT+ + NV  + V+V  SE  +          +Y  +  LL PI+ E S  
Sbjct: 14  WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 73

Query: 65  RLENNEAEFELIKSEQAMWD--EKKDKRSK 92
           ++ + + E +L K E   W+  E +     
Sbjct: 74  KVLSTKIEIKLKKPEAVRWEKLEGQGDVPT 103

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K  G+  ++  ++  A   Y   ++L P+    Y+N+AA +       + V    +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRI 64
          + Q P +V +TV    +P   V++   E  + +         Y  +  L   I+ +  + 
Sbjct: 7  YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKY 66

Query: 65 RLENNEAEFELIKSEQAMWD 84
           + + + E  L K++   W 
Sbjct: 67 EVLSTKIEICLAKADIITWA 86

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
           K + +  F+  +Y  A+  YS  ++L P+ A  Y NR+ A+L       A+ DA+ 
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
            + +     G ++   G    A+S +   +   P+    Y  RA   LA+     A+ D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 293 SEV 295
           ++V
Sbjct: 84  TKV 86

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHL 280
                 +    + +    +++ RDG Y  A S Y   ++  P++A               
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306

Query: 281 ALNNLHKAVDDASEV 295
                 +A+   SEV
Sbjct: 307 KDEKPVEAIRVCSEV 321

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
           +    F  G+Y  A++     L++C   A L   RA   +      KA+ D    
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 6/63 (9%), Positives = 23/63 (36%)

Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
            + +  + + +   ++G    A+S      +L  +    +   +  +  L +   ++ + 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 293 SEV 295
            E 
Sbjct: 235 REC 237

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
           + +     G ++   G    A+S +   +   P+    Y  RA   LA+     A+ D +
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 294 EV 295
           +V
Sbjct: 62  KV 63

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
           +    F   +Y  A++     L++C   A L   RA   +      KA+ D    
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHL 280
                 +    + +    +++ RDG Y  A S Y   ++  P++A               
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283

Query: 281 ALNNLHKAVDDASEV 295
                 +A+   SEV
Sbjct: 284 KDEKPVEAIRICSEV 298

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 231 EENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
                 +      +G+  F   N+  A+  Y + ++L PN    YSN +A +++  +L K
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77

Query: 288 AVDD 291
            ++ 
Sbjct: 78  VIEF 81

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 234 NPDWV---KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
              +    K KG+Q FR+  Y  A+  Y+  L+L  +    YSN +A ++++ +L K V+
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 291 DASE 294
            +++
Sbjct: 61  MSTK 64

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
           NP+  +    +G + F   ++  AV AY+  ++  P  A  YSNRAAA   L +  +A+ 
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194

Query: 291 DASEV 295
           D ++ 
Sbjct: 195 DCNKA 199

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
           KA+G++ ++   +  A+  Y+   +L  ++    +NRAAA         A+  
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 18/76 (23%)

Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------------------ACLYSNRAAAH 279
           ++ KG+++F   +Y  A+ AY   L     L                    LY+N +  +
Sbjct: 14  LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCY 73

Query: 280 LALNNLHKAVDDASEV 295
           L + +LH+A + +SEV
Sbjct: 74  LNIGDLHEAEETSSEV 89

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 9  CWRQTPSKVFITVPL-YNVPTHKVDVFTSESYIKLHY-GNYIFEKLLLRPIVEEASRIRL 66
           W Q  +++ I  P+  +  +  + +      I +   G  + +  LL  +   +    +
Sbjct: 8  TWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEIVIDGELLHEVDVSSLWWVI 67

Query: 67 ENNEAEFELIKSEQAMWDE 85
            +  +  + K     WD 
Sbjct: 68 NGDVVDVNVTKKRNEWWDS 86

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
          W      VFI   + +     V+   S+       G     ++ E  L   I    S+ +
Sbjct: 8  WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67

Query: 66 LENNEAEFELIKSEQAMW 83
            +      L K E    
Sbjct: 68 RTDRSILCCLRKGESGQS 85

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----------------ACLYSNRAAAHLA 281
           +K +G++ F+      A+  Y   L    +                      N A  +  
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100

Query: 282 LNNLHKAVDDASEV 295
             +  KA+D AS+V
Sbjct: 101 NKDYPKAIDHASKV 114

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
           N D      D +F++ NY  A+  ++       N   +Y+ RA  +  L     A  D 
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 15/73 (20%)

Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------------LACLYSNRAAAHLAL 282
           VK +G   F++G Y  A+  Y   +                        + N A  HL L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209

Query: 283 NNLHKAVDDASEV 295
                A++  ++ 
Sbjct: 210 QAFSAAIESCNKA 222

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 3/81 (3%)

Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
             +  EA     F          N D++            +  A   Y+    L  N   
Sbjct: 49  KGRIEEAEVFFRF-LCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 271 LYSNRAAAHLALNNLHKAVDD 291
              +     L L    KA + 
Sbjct: 106 PVFHTGQCQLRLKAPLKAKEC 126

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 209 EWLQKQAEARQACGFIAADLRPEENNPDWVKA--KGDQMFRDGNYLGAVSAYSHGLQLCP 266
           E    + +A++         + ++    W         +          +  +    L  
Sbjct: 155 EQKLDEKQAKEV--LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212

Query: 267 NLACLYSNRAAAHLALNNLHKAVDD 291
           +L+         +L+L +L  A   
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATAL 237

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 10  WRQTPSKVFITVPLYNV---PTHKVDVFTSESYIKLH-----YGNYIFE-KLLLRPIVEE 60
           W Q+   V I + L  V   PT  V V  +E    L        +Y      LL+PI  E
Sbjct: 25  WDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVE 84

Query: 61  ASRIRLENNEAEFELIK-SEQAMWD--EKKDKRSKEA 94
            S  +++ +       K  E   WD   + +K  KE 
Sbjct: 85  GSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEK 121

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 224 IAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
           +    + + N   W       G    +   Y  A+ A + GL L  N A +++  A  +L
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561

Query: 281 ALNNLHKAVDD 291
                  A+  
Sbjct: 562 HKKIPGLAITH 572

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
              + E R+A  ++++ +   E + D +  K D +F    ++  ++  +  L++ P    
Sbjct: 282 TSHEDELRRAEDYLSS-INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340

Query: 271 LYSNRAAAHLALNNLHKAVDDASEV 295
           +Y    A+       +K    ++++
Sbjct: 341 VYPLHLASLHESGEKNKLYLISNDL 365

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
              PD            F+      +    +  ++  P LA  YSN    +     L +A
Sbjct: 27  RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86

Query: 289 VDD 291
           ++ 
Sbjct: 87  IEH 89

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
            PD++         +   G+  GAV AY   LQ  P+L C+ S+      AL  L +A  
Sbjct: 97  KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156

Query: 291 D 291
            
Sbjct: 157 C 157

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 8/68 (11%), Positives = 25/68 (36%)

Query: 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
           +   + N D V +  ++ + + ++       S  ++  P  A          + LN  ++
Sbjct: 15  VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74

Query: 288 AVDDASEV 295
               + ++
Sbjct: 75  LFYLSHKL 82

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 224 IAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
               +  E     W       G    +   Y  A+  +   L L P  A  YS     H 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281

Query: 281 ALNNLHKAVD 290
            + N   AVD
Sbjct: 282 LMGNFENAVD 291

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
             K  +A++        L     +  +    G      G Y  A+ +YS+G  +  N   
Sbjct: 31  AGKWDDAQKIFQA-LCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 271 LYSNRAAAHLALNNLHKAVDD 291
              + A  HL L +L  A   
Sbjct: 88  FPFHAAECHLQLGDLDGAESG 108

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 17/77 (22%)

Query: 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC-----------------LYSNRAAA 278
           D  K  G+ +F++     A+  Y   +    +                     + N AA 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 279 HLALNNLHKAVDDASEV 295
            + L    +A+   + V
Sbjct: 240 LIKLKRYDEAIGHCNIV 256

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
             K  EA       A  + P     D     G+ +    +  GA+  Y+  +Q+ P  A 
Sbjct: 56  QGKLQEALMHY-KEAIRISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

Query: 271 LYSNRAAAHLALNNLHKAVD 290
            +SN A+ H    N+ +A+ 
Sbjct: 113 AHSNLASIHKDSGNIPEAIA 132

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
          W Q   KV++TV L +     V       +     G     + F   L   I+ E  +  
Sbjct: 9  WAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYRK-N 67

Query: 66 LENNEAEFELIKSEQAMW 83
          +      F + K E++ W
Sbjct: 68 VGLRNIIFSIQKEERSWW 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.89
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.85
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.79
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.78
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.76
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.76
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.76
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.74
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.73
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.7
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.69
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.23
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.02
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.96
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.9
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.83
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.74
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.6
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.5
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.5
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.49
4fei_A	102	Heat shock protein-related protein; stress respons	98.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.46
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.42
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.38
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.37
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.37
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.35
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.35
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.28
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	98.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.25
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.23
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.21
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.2
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.2
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.19
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.18
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.1
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.07
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.03
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.03
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.03
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.02
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.02
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.01
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.0
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	98.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.99
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.99
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.99
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.99
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.97
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.95
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.91
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.9
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.86
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.86
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.85
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.81
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.77
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.77
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.74
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.73
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.72
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.67
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.66
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.64
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.6
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.57
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.51
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.46
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.45
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.45
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.45
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.35
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.34
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.33
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	97.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.15
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.05
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	97.05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.0
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.0
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.99
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.99
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.83
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.8
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.64
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.44
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.3
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.26
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.66
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.43
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.41
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.3
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.2
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	95.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.68
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.59
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.92
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.54
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.53
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	93.42
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	92.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.54
1klx_A	138	Cysteine rich protein B; structural genomics, heli	92.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	92.13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	89.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	87.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	86.35
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	86.06
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	85.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	84.61
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.53
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	84.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.78
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	82.56
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.91

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.89  E-value=4.2e-23  Score=168.99  Aligned_cols=114  Identities=15%  Similarity=0.214  Sum_probs=73.8

Q ss_pred             CCcccCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecce-EEeecccCCcccCCceEEeeCCEEEEEEeec
Q psy5819           1 MPIIVKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGNY-IFEKLLLRPIVEEASRIRLENNEAEFELIKS   78 (296)
Q Consensus         1 Mp~~~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~~-~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~   78 (296)
                      ||. .+.|.|+||.++|+|+|+|| |+.++++.|.++..+|+|++.+. +|+++||++|++++|+|++.+++|+|+|.|+
T Consensus         1 m~~-~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~   79 (131)
T 2o30_A            1 MPS-EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEIVIDGELLHEVDVSSLWWVINGDVVDVNVTKK   79 (131)
T ss_dssp             -----CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEETTEEEEEEEBSSCEEEEEEEEEEETTEEEEEEEES
T ss_pred             CCC-CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEECCEeeEccccccccccccCEEEEeCCEEEEEEEEC
Confidence            885 78999999999999999997 88899999999999999987522 8899999999999999999999999999999


Q ss_pred             Cccccccc-c----chhhhHH---HHHhhhhcHHHHHHHHHhHHH
Q psy5819          79 EQAMWDEK-K----DKRSKEA---VSVQMKLETQEQTDVSNMKER  115 (296)
Q Consensus        79 ~~~~W~~L-k----~e~~k~~---~~~~~~le~e~R~~ie~~k~~  115 (296)
                      ...+|++| +    .+..+..   ..++++||+++|.+|++|.-+
T Consensus        80 ~~~~W~~L~~~~~~id~~k~~~e~~~~l~dld~e~~~~v~k~~~d  124 (131)
T 2o30_A           80 RNEWWDSLLVGSESVDVQKLAENKHADMSMLDAEAREVVEKMMHN  124 (131)
T ss_dssp             SCCCCSCSBC-----------------------------------
T ss_pred             CCCCCccccCCCCCCCHhHcCcccccccccCCHHHHHHHHHHHHH
Confidence            66679999 2    1222222   234899999999999998776

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.85  E-value=6.3e-22  Score=161.97  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=92.6

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-C--CCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeec
Q psy5819           5 VKESCWRQTPSKVFITVPLY-N--VPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKS   78 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~--~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~   78 (296)
                      .+.|.|+||.++|+|+|+|| +  ++.+++.|.++..+|+|++.  +++|+++||++|++++|+|++.++ .|+|+|.|+
T Consensus         7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~K~   86 (131)
T 1wfi_A            7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI   86 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEBS
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcCCCEEEEEEEEC
Confidence            57899999999999999999 6  78899999999999999984  478999999999999999999997 699999999


Q ss_pred             Ccc-ccccc-cc----hhhh--HHHHHhhhhcHHHHHHHHHhH
Q psy5819          79 EQA-MWDEK-KD----KRSK--EAVSVQMKLETQEQTDVSNMK  113 (296)
Q Consensus        79 ~~~-~W~~L-k~----e~~k--~~~~~~~~le~e~R~~ie~~k  113 (296)
                      +++ +|++| +.    +-.+  ....++.|||+++|.+||+|.
T Consensus        87 ~~~~~W~~L~~~~~~id~~ki~pe~~~~~dld~e~r~~vekmm  129 (131)
T 1wfi_A           87 NKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPS  129 (131)
T ss_dssp             SSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCCCCC
T ss_pred             CCCCCChhhhcCCCCCCccEecCCCCCcccCCHHHHHHHHHHh
Confidence            986 89999 11    0001  012346999999999999874

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.79  E-value=2.6e-19  Score=137.05  Aligned_cols=81  Identities=19%  Similarity=0.328  Sum_probs=77.0

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      ++|.|+||.+.|+|+|+++|+...++.|.+++++|+|++.     +|.++++||++|++++|+|++.+++|+|+|.|+++
T Consensus         3 ~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~   82 (92)
T 2xcm_C            3 YRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADI   82 (92)
T ss_dssp             SEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBSSS
T ss_pred             ccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcCCC
Confidence            5799999999999999999998899999999999999874     58999999999999999999999999999999999


Q ss_pred             cccccc
Q psy5819          81 AMWDEK   86 (296)
Q Consensus        81 ~~W~~L   86 (296)
                      ++|++|
T Consensus        83 ~~W~~L   88 (92)
T 2xcm_C           83 ITWASL   88 (92)
T ss_dssp             CCCSCS
T ss_pred             Ccchhc
Confidence            999998

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.78  E-value=8.3e-19  Score=141.54  Aligned_cols=82  Identities=18%  Similarity=0.256  Sum_probs=76.6

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-C--CCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeec
Q psy5819           5 VKESCWRQTPSKVFITVPLY-N--VPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKS   78 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~--~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~   78 (296)
                      .+.|.|+||.++|+|+|+|| +  ++.++++|.++..+|+|++.  +++|+++||++|++++|+|++.++ .|+|+|.|+
T Consensus        16 ~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~K~   95 (121)
T 3qor_A           16 LPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKI   95 (121)
T ss_dssp             CSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEEBS
T ss_pred             CCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccccEEEEcCCCEEEEEEEEC
Confidence            57899999999999999999 5  78899999999999999986  689999999999999999999986 999999999


Q ss_pred             Ccc-ccccc
Q psy5819          79 EQA-MWDEK   86 (296)
Q Consensus        79 ~~~-~W~~L   86 (296)
                      +.+ +|++|
T Consensus        96 ~~~~~W~~L  104 (121)
T 3qor_A           96 NKMEWWSRL  104 (121)
T ss_dssp             SSSCCCSCS
T ss_pred             CCCCCChhh
Confidence            886 79999

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.76  E-value=2e-18  Score=139.85  Aligned_cols=82  Identities=24%  Similarity=0.296  Sum_probs=76.0

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-CC-CCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCE-EEEEEe
Q psy5819           5 VKESCWRQTPSKVFITVPLY-NV-PTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNE-AEFELI   76 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~~-~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~-v~i~L~   76 (296)
                      ++.|.|+||.++|+|+|+|+ ++ ..+++.|.++..+|+|++.     +++|+++||++|++++|+|++.+++ |+|+|.
T Consensus        19 ~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~   98 (124)
T 1wgv_A           19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLS   98 (124)
T ss_dssp             CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEEC
T ss_pred             CCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEE
Confidence            57899999999999999998 77 7899999999999999872     4789999999999999999999886 999999


Q ss_pred             ecCccccccc
Q psy5819          77 KSEQAMWDEK   86 (296)
Q Consensus        77 K~~~~~W~~L   86 (296)
                      |++..+|++|
T Consensus        99 K~~~~~W~~L  108 (124)
T 1wgv_A           99 KVGEYWWNAI  108 (124)
T ss_dssp             BSSSCCCSCS
T ss_pred             ECCCCCCcCc
Confidence            9988889999

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.76  E-value=1.2e-18  Score=138.68  Aligned_cols=86  Identities=30%  Similarity=0.402  Sum_probs=77.2

Q ss_pred             CCcc-cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEE
Q psy5819           1 MPII-VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFE   74 (296)
Q Consensus         1 Mp~~-~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~   74 (296)
                      |+.. .+.|+|+||.+.|+|+|++||+...++.|.+++.+|+|++.     +|.++++||++|++++|+|++.+++|+|+
T Consensus         4 m~~~~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~   83 (114)
T 1rl1_A            4 MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIK   83 (114)
T ss_dssp             ----CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEE
T ss_pred             CCCCCCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEE
Confidence            5532 26799999999999999999998899999999999999863     68999999999999999999999999999


Q ss_pred             EeecCccccccc
Q psy5819          75 LIKSEQAMWDEK   86 (296)
Q Consensus        75 L~K~~~~~W~~L   86 (296)
                      |.|+++++|++|
T Consensus        84 L~K~~~~~W~~L   95 (114)
T 1rl1_A           84 LKKPEAVRWEKL   95 (114)
T ss_dssp             EECSSCCCCSSS
T ss_pred             EEcCCCCcCccc
Confidence            999999999999

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=5.7e-18  Score=137.68  Aligned_cols=84  Identities=26%  Similarity=0.336  Sum_probs=77.5

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCC---CCCcceEEeeccEEEEeec-----ceEEeec-ccCCcccCCceEEeeCCEEEEE
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNV---PTHKVDVFTSESYIKLHYG-----NYIFEKL-LLRPIVEEASRIRLENNEAEFE   74 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~---~~~~~~V~~~~~~lkv~~~-----~~~~~~~-L~~~Id~e~S~~~i~~~~v~i~   74 (296)
                      .+++|.|+||.+.|+|+|+++++   ...++.|.++..+|+|++.     +|.|+++ ||++|++++|+|++.+++|+|+
T Consensus        19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~   98 (127)
T 1x5m_A           19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLIL   98 (127)
T ss_dssp             ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEE
T ss_pred             CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEE
Confidence            35799999999999999999998   7889999999999999874     5899985 9999999999999999999999


Q ss_pred             EeecCcc-cccccc
Q psy5819          75 LIKSEQA-MWDEKK   87 (296)
Q Consensus        75 L~K~~~~-~W~~Lk   87 (296)
                      |.|++++ +|++|.
T Consensus        99 L~K~~~~~~W~~L~  112 (127)
T 1x5m_A           99 CRKKVENTRWDYLT  112 (127)
T ss_dssp             EECSSSSCCCSSSB
T ss_pred             EEECCCCCCCCccc
Confidence            9999988 799993

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.74  E-value=7.4e-18  Score=141.86  Aligned_cols=86  Identities=20%  Similarity=0.320  Sum_probs=77.9

Q ss_pred             CCcccCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecc-eEEeecccCCcccCCceEEeeCCE-EEEEEee
Q psy5819           1 MPIIVKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGN-YIFEKLLLRPIVEEASRIRLENNE-AEFELIK   77 (296)
Q Consensus         1 Mp~~~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~~~-v~i~L~K   77 (296)
                      +|...+.|.|+||.++|+|+|+|| +++.+++.|.++..+|+|++.. .+|+++||++|++++|+|++.+++ |+|+|.|
T Consensus         9 ~~~~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg~~~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K   88 (157)
T 2rh0_A            9 VPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTLEDRKMVRIVLTK   88 (157)
T ss_dssp             CCEECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEETTEEEEEEEBSSCBCGGGCEEEEECCCEEEEEEEB
T ss_pred             ccCCCCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEECCEEEEeeccccccCccccEEEEcCCcEEEEEEEE
Confidence            455578999999999999999998 8888999999999999998752 468999999999999999999987 9999999


Q ss_pred             cCc---cccccc
Q psy5819          78 SEQ---AMWDEK   86 (296)
Q Consensus        78 ~~~---~~W~~L   86 (296)
                      ++.   .+|++|
T Consensus        89 ~~~~~~~~W~~L  100 (157)
T 2rh0_A           89 TKRDAANCWTSL  100 (157)
T ss_dssp             SSCSTTCCCSEE
T ss_pred             cCCCcCCcChhh
Confidence            987   479999

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.73  E-value=1.1e-17  Score=137.13  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=77.2

Q ss_pred             cCCcEEEee-CCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----------------ceEEeecccCCcccCCceEEe
Q psy5819           5 VKESCWRQT-PSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----------------NYIFEKLLLRPIVEEASRIRL   66 (296)
Q Consensus         5 ~~~y~W~QT-~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----------------~~~~~~~L~~~Id~e~S~~~i   66 (296)
                      .++|.|+|| .+.|+|+|+++++...++.|.++..+|+|++.                 .|.|+++||++|+|++|+|++
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v   98 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF   98 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEE
Confidence            478999999 99999999999999999999999999999863                 588899999999999999999


Q ss_pred             eCCEEEEEEeecCccccccc
Q psy5819          67 ENNEAEFELIKSEQAMWDEK   86 (296)
Q Consensus        67 ~~~~v~i~L~K~~~~~W~~L   86 (296)
                      .+++|+|+|.|+++++|++|
T Consensus        99 ~~~kIeI~L~K~e~~~W~~L  118 (134)
T 1wh0_A           99 TASRIDICLRKRQSQRWGGL  118 (134)
T ss_dssp             CSSEEEEEEEESSSCCCSCS
T ss_pred             eCCEEEEEEEECCCCccccc
Confidence            99999999999998889999

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.70  E-value=2.2e-17  Score=133.82  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             cC-CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819           5 VK-ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus         5 ~~-~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      +| .|.|+||.+.|+|+|+++++  .++.|.++..+|+|++.      +|.|+++||++|+|++|+|++.+++|+|+|.|
T Consensus         2 ~P~~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K   79 (125)
T 1ejf_A            2 QPASAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRK   79 (125)
T ss_dssp             BCCCEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CCCceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEE
Confidence            35 89999999999999999996  68899999999998852      48999999999999999999999999999999


Q ss_pred             cCcc-ccccc
Q psy5819          78 SEQA-MWDEK   86 (296)
Q Consensus        78 ~~~~-~W~~L   86 (296)
                      ++++ +|++|
T Consensus        80 ~~~~~~W~rL   89 (125)
T 1ejf_A           80 GESGQSWPRL   89 (125)
T ss_dssp             SSTTCCCSSS
T ss_pred             CCCCCCCCce
Confidence            9876 79999

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.69  E-value=3.4e-17  Score=136.75  Aligned_cols=82  Identities=22%  Similarity=0.331  Sum_probs=75.0

Q ss_pred             CCcccCCcEEEeeCCEEEEEEEeCCCCCCcceEEee-ccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEE
Q psy5819           1 MPIIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTS-ESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFE   74 (296)
Q Consensus         1 Mp~~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~-~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~   74 (296)
                      |++ +|.|.|+||.+.|+|+|.++++  .++.|.++ ..+|+|++.     .|.|+++||++|+|+ |+|++.+++|+|+
T Consensus         1 m~~-~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~   76 (150)
T 2kmw_A            1 SSR-NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFS   76 (150)
T ss_dssp             CEE-CCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEE
T ss_pred             CCc-CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEE
Confidence            775 7899999999999999999997  47888888 688888763     589999999999999 9999999999999


Q ss_pred             EeecCccccccc
Q psy5819          75 LIKSEQAMWDEK   86 (296)
Q Consensus        75 L~K~~~~~W~~L   86 (296)
                      |.|+++++|++|
T Consensus        77 L~K~e~~~W~rL   88 (150)
T 2kmw_A           77 IQKEERSWWTRL   88 (150)
T ss_dssp             EEECCSSCCSCS
T ss_pred             EEECCCCcCccc
Confidence            999999899999

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-16  Score=131.35  Aligned_cols=81  Identities=25%  Similarity=0.405  Sum_probs=66.2

Q ss_pred             ccCCcEEEeeCCE-------EEEEEEeCCCCCCcceEEeeccEEEEee-----------cceEEeecccCCcccCCceEE
Q psy5819           4 IVKESCWRQTPSK-------VFITVPLYNVPTHKVDVFTSESYIKLHY-----------GNYIFEKLLLRPIVEEASRIR   65 (296)
Q Consensus         4 ~~~~y~W~QT~~~-------V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----------~~~~~~~~L~~~Id~e~S~~~   65 (296)
                      +.|.|.|+||.+.       |+|+|+++++.  ++.|.++..+|+|++           ..|.|+++||++|+|++|+|+
T Consensus         5 ~~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~   82 (134)
T 2cg9_X            5 INPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHK   82 (134)
T ss_dssp             ------CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEE
T ss_pred             cCCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEE
Confidence            3689999999988       99999999974  778888888888863           248999999999999999999


Q ss_pred             eeCCE-EEEEEeecCc--cccccc
Q psy5819          66 LENNE-AEFELIKSEQ--AMWDEK   86 (296)
Q Consensus        66 i~~~~-v~i~L~K~~~--~~W~~L   86 (296)
                      +.+++ |+|+|.|+++  .+|++|
T Consensus        83 v~~~~~vei~L~K~~~~~~~W~rL  106 (134)
T 2cg9_X           83 VANGQHYFLKLYKKDLESEYWPRL  106 (134)
T ss_dssp             ECCC--CEEEEEECSSSSCCCSCS
T ss_pred             ECCCEEEEEEEEECCCCCCCCCce
Confidence            99999 9999999994  479999

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.23  E-value=2.9e-11  Score=96.18  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+++.|+.+|+.|+|.+|+.+|++||+++|.++.+|+|+|.||+.+|+|.+|+.+|.+|
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999999999999999999999886

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.19  E-value=6.6e-11  Score=94.16  Aligned_cols=63  Identities=33%  Similarity=0.516  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++.++++|+.+|+.|+|.+|+.+|++||+++|.++.+|+|+|.||+.+|++.+|+.+|.+|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.02  E-value=6.1e-10  Score=93.57  Aligned_cols=62  Identities=13%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-------LAC-----LYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-------~~~-----ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +..+++.|+.+|+.|+|.+|+.+|++||+++|+       +..     +|+|||.|+.++|+|.+|+.+|++|+
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL   84 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   84 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677899999999999999999999999999999       444     99999999999999999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.96  E-value=9.8e-10  Score=89.66  Aligned_cols=63  Identities=29%  Similarity=0.468  Sum_probs=59.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL------------------CPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~------------------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ..+..+++.|+.+|+.|+|..|+..|++||.+                  +|.++.+|+|+|.||+++|+|.+|+.+|.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35788999999999999999999999999999                  777889999999999999999999999998


Q ss_pred             c
Q psy5819         295 V  295 (296)
Q Consensus       295 A  295 (296)
                      |
T Consensus        89 a   89 (162)
T 3rkv_A           89 V   89 (162)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.90  E-value=5.9e-09  Score=81.06  Aligned_cols=61  Identities=13%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ++..+...|..++..|+|..|+..|.++|.++|.++.+|+++|.||..+|++.+|+..+.+
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~   97 (126)
T 3upv_A           37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA   97 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.4e-08  Score=76.24  Aligned_cols=62  Identities=26%  Similarity=0.387  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.++|.++|.++.+|+|+|.||+.+|+|.+|+..+.+|
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999876

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.5e-08  Score=82.09  Aligned_cols=83  Identities=13%  Similarity=0.250  Sum_probs=75.1

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCCC--CCcceEEeeccEEEEeecceEEeecccCCc-ccCCceEEe--eCCEEEEEEeec
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNVP--THKVDVFTSESYIKLHYGNYIFEKLLLRPI-VEEASRIRL--ENNEAEFELIKS   78 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~~--~~~~~V~~~~~~lkv~~~~~~~~~~L~~~I-d~e~S~~~i--~~~~v~i~L~K~   78 (296)
                      +.|.|+-+|+++.|+|.|.+|.++  .++++|.+.+..|.++.+||.+-+.|.++| +.+.++.+.  ..+.+.|+|.|.
T Consensus         2 iTP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~   81 (134)
T 2k8q_A            2 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKL   81 (134)
T ss_dssp             CCSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEEES
T ss_pred             cCceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEeCC
Confidence            579999999999999999999988  789999999999999999999999999999 666655554  568999999999


Q ss_pred             Cccc-cccc
Q psy5819          79 EQAM-WDEK   86 (296)
Q Consensus        79 ~~~~-W~~L   86 (296)
                      .+|. |+-|
T Consensus        82 ~~Ge~F~dL   90 (134)
T 2k8q_A           82 NKNEYFEDL   90 (134)
T ss_dssp             STTCCCSST
T ss_pred             CCCCCCCCc
Confidence            9996 9888

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.77  E-value=3.9e-08  Score=81.11  Aligned_cols=64  Identities=17%  Similarity=0.073  Sum_probs=41.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.++..+...|..++..|+|.+|+.+|.+||.++|+++.+|+|+|.||+.+|++.+|+..+.+|
T Consensus        67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A           67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445566666666666666666666666666666666666666666666666666666666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.74  E-value=5e-08  Score=77.26  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|..+++.|+|..|+..|.+||+++|.++.+|+|+|.||..+|+|.+|+.++.+|
T Consensus        43 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           43 DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA  107 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.74  E-value=3.7e-08  Score=81.21  Aligned_cols=83  Identities=10%  Similarity=-0.086  Sum_probs=69.4

Q ss_pred             HHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         213 KQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       213 ~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      .......+...-..-+...+.++..+...|..+++.|+|.+|+..|.+++.++|.++.+|+|+|.||..+|+|.+|+..+
T Consensus        14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            33344443333334445556678899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhc
Q psy5819         293 SEV  295 (296)
Q Consensus       293 ~~A  295 (296)
                      .+|
T Consensus        94 ~~a   96 (151)
T 3gyz_A           94 AVA   96 (151)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.4e-07  Score=74.12  Aligned_cols=84  Identities=13%  Similarity=0.273  Sum_probs=73.9

Q ss_pred             cccCCcEEEeeCCEEEEEEEeCCCC--CCcceEEeeccEEEEeecceEEeecccCCccc-CCc--eEEeeCCEEEEEEee
Q psy5819           3 IIVKESCWRQTPSKVFITVPLYNVP--THKVDVFTSESYIKLHYGNYIFEKLLLRPIVE-EAS--RIRLENNEAEFELIK   77 (296)
Q Consensus         3 ~~~~~y~W~QT~~~V~i~V~l~~~~--~~~~~V~~~~~~lkv~~~~~~~~~~L~~~Id~-e~S--~~~i~~~~v~i~L~K   77 (296)
                      ++.|.|+-+|+++.|+|.|.+|.++  ...+++.+.++.+.+.++||++-+.|.++|.. +.+  +|.+..+.+.|+|.|
T Consensus        15 ~iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK   94 (115)
T 3eud_A           15 MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   94 (115)
T ss_dssp             CBCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEETTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEE
T ss_pred             EeCCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecCCeEEEEecCcceecCCCcceEEeCCCcEEEEEEcC
Confidence            5679999999999999999999776  77999999999999999999999999999944 443  566677999999999


Q ss_pred             cCccc-cccc
Q psy5819          78 SEQAM-WDEK   86 (296)
Q Consensus        78 ~~~~~-W~~L   86 (296)
                      ..+|. .+-|
T Consensus        95 ~~~GE~F~dL  104 (115)
T 3eud_A           95 LNKNEYFEDL  104 (115)
T ss_dssp             SSTTCCCCCT
T ss_pred             CcCCCcCCCc
Confidence            99996 7666

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.71  E-value=4.8e-08  Score=79.61  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.++|.++|.++.+|+++|.||+.+|+|.+|+..+.+|
T Consensus        43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           43 ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666666666666666666666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.71  E-value=6.8e-08  Score=73.04  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|.+|+..|.++|+++|.++.+|+++|.||..+|++.+|+..+.+|
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999998876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.66  E-value=7.4e-08  Score=80.78  Aligned_cols=60  Identities=15%  Similarity=0.075  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQL-------CPNLACLY----SNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~-------~p~~~~ly----~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+.++|..+.+.|+|.+|+.+|++||++       +|+++.+|    +|||.|+..+|+|.+|+.++.+|
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            38899999999999999999999999999       99999999    99999999999999999999987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.64  E-value=1.5e-07  Score=73.27  Aligned_cols=62  Identities=8%  Similarity=0.018  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.++|.++.+++++|.||+.+|++.+|+..+.+|
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           42 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.4e-07  Score=71.79  Aligned_cols=61  Identities=30%  Similarity=0.434  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|+.+++.|+|..|+..|.++|.++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.56  E-value=2.2e-07  Score=75.42  Aligned_cols=62  Identities=19%  Similarity=0.065  Sum_probs=59.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..+++.|+|..|+..|.+||.++|.++.+|+++|.||+.+|+|.+|+.++.+|
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.54  E-value=2.6e-07  Score=75.89  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|+.++..|+|.+|+..|.+||+++|+++.+|.++|.||..+|++.+|+..+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~   65 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF   65 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999988765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.54  E-value=2.6e-07  Score=82.83  Aligned_cols=62  Identities=24%  Similarity=0.442  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|+.++..|+|.+|+..|.+||.++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.53  E-value=3.6e-07  Score=74.12  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=58.2

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|.+|+.+|.++|.++|+++.+|+|+|.||+.+|++.+|+..+.+|
T Consensus        52 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           52 HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4457888899999999999999999999999999999999999999999999999999988775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.53  E-value=4e-07  Score=74.78  Aligned_cols=63  Identities=17%  Similarity=0.060  Sum_probs=59.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|.+|+..|.++|+++|.++.+|.|+|.||.++|++.+|+..+.+|
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999886

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.52  E-value=4.5e-07  Score=72.32  Aligned_cols=64  Identities=22%  Similarity=0.181  Sum_probs=58.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|..|+.+|.++|.++|.++.+|+++|.||+.+|++.+|+..+.+|
T Consensus        49 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           49 HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4457888899999999999999999999999999999999999999999999999999988775

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.50  E-value=3.1e-07  Score=74.54  Aligned_cols=63  Identities=13%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++..+...|..++..|+|.+|+..|.+++.++|.++.+|+++|.||..+|+|.+|+..+.+|
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346778899999999999999999999999999999999999999999999999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.50  E-value=3.2e-07  Score=74.45  Aligned_cols=62  Identities=10%  Similarity=-0.186  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+++.|+|..|+..|.++|+++|+++.+|.++|.||..+|++.+|+..+.+|
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   91 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS   91 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            35566778999999999999999999999999999999999999999999999999888775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.50  E-value=5.1e-07  Score=69.55  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=59.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|.+|+..|.++|.++|+++.+++++|.||..+|++.+|+..+.+|
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999988875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.49  E-value=4.1e-07  Score=67.34  Aligned_cols=57  Identities=19%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC-LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~-ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+|..++..|+|..|+..|.+++..+|.++. +++++|.||+.+|++.+|+..+.+|
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56899999999999999999999999999999 9999999999999999999999876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.49  E-value=2.4e-07  Score=89.18  Aligned_cols=62  Identities=27%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---------------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---------------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..++.+|+.+|+.|+|..|+.+|.+||.++|.+               ..+|+|+|.||+++|+|.+|+.+|++|
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            36688999999999999999999999999999998               799999999999999999999999987

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=98.48  E-value=1.4e-06  Score=67.30  Aligned_cols=77  Identities=9%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec---------------ceEEeecccCCcccCCceEEeeCC
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG---------------NYIFEKLLLRPIVEEASRIRLENN   69 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~---------------~~~~~~~L~~~Id~e~S~~~i~~~   69 (296)
                      .|.+.|.++++.+.|++.|||+...+++|.+.++.|.|+..               .|.-.+.|...|+++..++++.++
T Consensus         6 ~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~G   85 (102)
T 4fei_A            6 TPAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGG   85 (102)
T ss_dssp             CCCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETT
T ss_pred             cCcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECC
Confidence            57899999999999999999999999999999999999642               234477799999999999999999


Q ss_pred             EEEEEEeecCcc
Q psy5819          70 EAEFELIKSEQA   81 (296)
Q Consensus        70 ~v~i~L~K~~~~   81 (296)
                      .|.|+|.|+++.
T Consensus        86 vL~I~lpK~~~~   97 (102)
T 4fei_A           86 VLTVRFEKLRPT   97 (102)
T ss_dssp             EEEEEEEBSSCC
T ss_pred             EEEEEEEccCcc
Confidence            999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.48  E-value=4.2e-07  Score=72.51  Aligned_cols=64  Identities=17%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|.+|+..|.+++.++|.++.+|.++|.||..+|+|.+|+..+.+|
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3356778899999999999999999999999999999999999999999999999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.46  E-value=7.9e-07  Score=72.24  Aligned_cols=64  Identities=30%  Similarity=0.392  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|+.++..|+|..|+..|.++|.++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999999876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.44  E-value=1.1e-06  Score=63.21  Aligned_cols=61  Identities=21%  Similarity=0.318  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||+.+|++.+|+..+.+|
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999999999999999999988775

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.44  E-value=6.7e-07  Score=74.98  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----------------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~----------------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|+.++..|+|..|+..|.++|.+.|.++                .+|.|+|.||+.+|+|.+|+..|.+|
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56789999999999999999999999999999887                89999999999999999999999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.42  E-value=1.1e-06  Score=67.00  Aligned_cols=63  Identities=10%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++..+...|..++..|+|..|+..|.++|.++|.++.+|+++|.||..+|++.+|+..+.+|
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999998875

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.42  E-value=2.1e-06  Score=65.96  Aligned_cols=77  Identities=9%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------------------ceEEeecccCCcccCCce
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------------------NYIFEKLLLRPIVEEASR   63 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------------------~~~~~~~L~~~Id~e~S~   63 (296)
                      ..|.+.|.++++.+.|.+.|||+...+++|.+.++.|.|+..                    .|.-.+.|...||++..+
T Consensus         3 ~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~   82 (100)
T 3gla_A            3 WVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGIT   82 (100)
T ss_dssp             SCCCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCE
T ss_pred             ccCcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeE
Confidence            357899999999999999999999999999999999999852                    123367799999999999


Q ss_pred             EEeeCCEEEEEEeecCc
Q psy5819          64 IRLENNEAEFELIKSEQ   80 (296)
Q Consensus        64 ~~i~~~~v~i~L~K~~~   80 (296)
                      +++.+|.|.|+|.|+..
T Consensus        83 A~~~~GvL~I~~pK~~~   99 (100)
T 3gla_A           83 AAGRNGVLEIRIPKRPA   99 (100)
T ss_dssp             EEEETTEEEEEEEBC--
T ss_pred             EEEeCCEEEEEEecCCC
Confidence            99999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.40  E-value=1.2e-06  Score=65.22  Aligned_cols=64  Identities=23%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++..+|.++.++.++|.|+..+|++.+|+..+.++
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3456777788888888888888888888888888888888888888888888888888777654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.4e-06  Score=68.03  Aligned_cols=61  Identities=16%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.+++++|.||+.+|++.+|+..+.++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5677788888888888888888888888888888888888888888888888888887765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.38  E-value=8.5e-07  Score=81.71  Aligned_cols=61  Identities=23%  Similarity=0.339  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---------------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---------------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|+.+|+.|+|..|+.+|.+||.++|.+               +.+|+|+|.||+++|+|.+|+..|.+|
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6778999999999999999999999999999998               699999999999999999999999986

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.37  E-value=1.1e-06  Score=68.68  Aligned_cols=65  Identities=17%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..++..|++..|+.+|.+||.++|.++.++.++|.||..+|++.+|+..+.++
T Consensus        47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999988775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.37  E-value=1.3e-06  Score=74.23  Aligned_cols=61  Identities=18%  Similarity=0.077  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.||..+|++.+|+..+.+|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  102 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEG  102 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3444445555666666666666666666666655556666666666666666665555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.37  E-value=2.1e-06  Score=66.65  Aligned_cols=64  Identities=23%  Similarity=0.425  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.++|.++|.++.+|+++|.||+.+|+|.+|+..+.+|
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4468899999999999999999999999999999999999999999999999999999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.35  E-value=1.1e-06  Score=65.06  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHc-CCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLAL-NNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lkl-~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++.++|.  +..++.++|.||..+ |++.+|+..+..+
T Consensus        37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345667778888888888888888888888888888  888888888888888 8888888877664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.35  E-value=1.3e-06  Score=66.78  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||+.+|++.+|+..+.++
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34467888999999999999999999999999999999999999999999999999999988765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=1.7e-06  Score=67.63  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...|..+++.|+|.+|+..|.++|.++|.++.+|+++|.|+..+|++.+|+..+.+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA   77 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.33  E-value=2.4e-06  Score=64.80  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.++.++.++|.||+.+|+|.+|+..+.++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999998875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.31  E-value=1.5e-06  Score=68.49  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+..+...|..++..|+|..|+..|.+||+++|.+       +.+|.|+|.||..+|+|.+|+..+.+|
T Consensus        39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999998865       368999999999999999999998876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.28  E-value=3.4e-06  Score=67.12  Aligned_cols=64  Identities=22%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++.++|.++.+++++|.||..+|++.+|+..+.+|
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3456777778888888888888888888888888888888888888888888888888777664

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=98.27  E-value=5.2e-06  Score=66.25  Aligned_cols=77  Identities=9%  Similarity=-0.009  Sum_probs=67.9

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeec-cEEEEeec----------------ceEEeecccCCcccCCc-eEEe
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSE-SYIKLHYG----------------NYIFEKLLLRPIVEEAS-RIRL   66 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~-~~lkv~~~----------------~~~~~~~L~~~Id~e~S-~~~i   66 (296)
                      .|.+.|.++++.+.|.+.|||+...+++|.+.+ +.|.|+..                .|.-.+.|...|+++.. ++++
T Consensus        24 ~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~  103 (123)
T 3aab_A           24 YPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY  103 (123)
T ss_dssp             CSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEE
T ss_pred             CCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEE
Confidence            478999999999999999999999999999999 99999874                23336779999999999 9999


Q ss_pred             eCCEEEEEEeecCcc
Q psy5819          67 ENNEAEFELIKSEQA   81 (296)
Q Consensus        67 ~~~~v~i~L~K~~~~   81 (296)
                      .+|.|.|+|.|....
T Consensus       104 ~~GvL~I~lPK~~~~  118 (123)
T 3aab_A          104 ENGVLTIRIPIAGTS  118 (123)
T ss_dssp             ETTEEEEEEEGGGEE
T ss_pred             cCCEEEEEEEcCCCC
Confidence            999999999998653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.26  E-value=1e-06  Score=82.74  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=57.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQ----------------LCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~----------------~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..++..|+.+|+.|+|..|+.+|.+||+                ++|.++.+|+|+|.||+++|+|.+|+.+|.+|
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            356799999999999999999999999998                77888899999999999999999999999887

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.25  E-value=3.9e-06  Score=70.15  Aligned_cols=62  Identities=18%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.++|.++.+|+|+|.||+.+|+|.+|+..+.+|
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   97 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA   97 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.23  E-value=6e-06  Score=63.31  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+|++   +.+++++|.||..+|++.+|+..+.++
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3678889999999999999999999999999998   889999999999999999999988765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.22  E-value=7.4e-06  Score=60.78  Aligned_cols=62  Identities=32%  Similarity=0.459  Sum_probs=58.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++..+|.++.++.++|.||+.+|++.+|+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   64 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   64 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999998875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.22  E-value=4.2e-06  Score=71.15  Aligned_cols=56  Identities=18%  Similarity=0.086  Sum_probs=53.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|..++..|+|..|+..|.++|+++|+++.+++++|.||+.+|++.+|+..+.+|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.22  E-value=1.3e-05  Score=61.12  Aligned_cols=65  Identities=34%  Similarity=0.487  Sum_probs=60.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|..|+..|.+++..+|.++.++.++|.||+.+|++.+|+..+.+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999998875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.22  E-value=6.7e-06  Score=62.06  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++..+|.++.++.++|.+|..+|++.+|+..+.+|
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA  106 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456777888888888888888888888888888888888888888888888888888887765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.21  E-value=2.5e-06  Score=72.53  Aligned_cols=62  Identities=23%  Similarity=0.073  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSN----------------RAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~N----------------RA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+..+|..++..|+|.+|+..|.++|.++|+++.+|++                +|.||..+|++.+|+..+.+|
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999                999999999999999999876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.20  E-value=4.5e-06  Score=71.44  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|..++..|+|.+|+..|.++|.++|.++.+++++|.+++.+|++.+|+..+.+|
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   65 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL   65 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.20  E-value=7.1e-07  Score=82.41  Aligned_cols=61  Identities=20%  Similarity=0.249  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-----------------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-----------------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..++..|+.+|+.|+|..|+.+|.+||.++|.+.                 .+|+|+|.||+++|+|.+|+.+|.+|
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            67789999999999999999999999999999876                 49999999999999999999999986

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.20  E-value=3.8e-06  Score=80.72  Aligned_cols=61  Identities=20%  Similarity=0.109  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..+++.|+|..|+.+|++||.++|.++.+|+|||.||+.+|+|.+|+.++.+|
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999886

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=5.4e-06  Score=61.10  Aligned_cols=61  Identities=23%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.+..++.++|.+|+.+|++.+|+..+.+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   66 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYV   66 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999998875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.19  E-value=4.2e-06  Score=64.22  Aligned_cols=59  Identities=17%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...|..++..|+|..|+..|.+++..+|.++   .+++++|.||+.+|+|.+|+..+.++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~   65 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL   65 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            467889999999999999999999999999988   79999999999999999999998765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.18  E-value=3.5e-06  Score=68.18  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=58.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH-Hhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA-SEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~-~~A  295 (296)
                      .+.++..+...|..++..|+|..|+.+|.++|+++|+++.+|.|+|.+|+.+|++.+|+..+ .+|
T Consensus        61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a  126 (150)
T 4ga2_A           61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA  126 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999998877664 554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.18  E-value=4.9e-06  Score=76.54  Aligned_cols=61  Identities=23%  Similarity=0.171  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..+++.|+|..|+.+|.+||.++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.17  E-value=2.1e-06  Score=71.76  Aligned_cols=65  Identities=12%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             CCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----------CHHHHH
Q psy5819         231 EENNPDWVKAKGDQMFRDGNY----------LGAVSAYSHGLQLCPNLACLYSNRAAAHLALN-----------NLHKAV  289 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y----------~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~-----------~~~~Ai  289 (296)
                      ...+++.+...|+.+...|+|          .+||.+|.+||+++|+++.+|+|++.+|..+|           +|.+|+
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            455689999999999988875          59999999999999999999999999999985           899999


Q ss_pred             HHHHhc
Q psy5819         290 DDASEV  295 (296)
Q Consensus       290 ~D~~~A  295 (296)
                      ..|.+|
T Consensus       112 ~~~~kA  117 (158)
T 1zu2_A          112 QFFQQA  117 (158)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999887

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.13  E-value=1.3e-05  Score=63.67  Aligned_cols=61  Identities=28%  Similarity=0.446  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||+.+|+|.+|+..+.+|
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   73 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA   73 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556666666666666666666666666666666666666666666666666666666544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.13  E-value=8.8e-06  Score=68.01  Aligned_cols=60  Identities=13%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|..|+..|.++|.++|.++.+|+++|.||+.+|+|.+|+..+.+|
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999999999998876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.12  E-value=9.5e-06  Score=70.57  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=60.6

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|..|+..|.++|...|.+   +.+++++|.||+.+|+|.+|+..+.++
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   78 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERF   78 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34568899999999999999999999999999999998   899999999999999999999998875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.12  E-value=1.8e-05  Score=59.68  Aligned_cols=62  Identities=31%  Similarity=0.468  Sum_probs=55.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++..+|.++.++.++|.||+.+|++.+|+..+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   72 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA   72 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            46678888999999999999999999999999999999999999999999999999888765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=1.4e-05  Score=62.22  Aligned_cols=64  Identities=36%  Similarity=0.584  Sum_probs=60.0

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++.++|.+   ..+|.++|.||+.+|+|.+|+..|.++
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            4567889999999999999999999999999999987   899999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.08  E-value=9.5e-06  Score=76.05  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..+++.|+|.+|+.+|.+||+++|.++.+|+++|.||+.+|+|.+|+.++.+|
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.07  E-value=6e-06  Score=76.12  Aligned_cols=60  Identities=15%  Similarity=0.055  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+.+.|..+++.|+|..|+..|.+||.++|.++.+|+|+|.||+.+|+|.+|+.++.+|.
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.05  E-value=9.5e-06  Score=82.93  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .....+..+.+.|+.+++.|+|.+|+.+|.+||+++|+++.+|+|+|.+|..+|++.+|+..+.+|
T Consensus        38 l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kA  103 (723)
T 4gyw_A           38 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA  103 (723)
T ss_dssp             HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345567888888999999999999999999999999998999999999999999999998888876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.03  E-value=8.3e-06  Score=77.01  Aligned_cols=65  Identities=6%  Similarity=-0.033  Sum_probs=54.0

Q ss_pred             CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGN-YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~-y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+..+|..++..|+ |.+|+.+|.+||.++|+++.+|+||+.|+..+|+|.+|+.+|.+|
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34557778888888888886 888888888888888888888888888888888888888888775

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.03  E-value=5.6e-06  Score=78.55  Aligned_cols=61  Identities=25%  Similarity=0.443  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|+.+++.|+|..|+..|.++|..+|.++.+|+++|.||+.+|++.+|+..|.+|
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   85 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA   85 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.03  E-value=1.5e-05  Score=71.23  Aligned_cols=64  Identities=8%  Similarity=-0.001  Sum_probs=60.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..+++.|+|.+|+..|.+||.++|.++.+|+++|.+|..+|+|.+|+..+.+|
T Consensus        35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (281)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999998876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.03  E-value=1.1e-05  Score=68.86  Aligned_cols=65  Identities=15%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL-----------NNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl-----------~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|..++..|+|.+|+..|.++|.++|+++.++.|+|.++..+           |++.+|+..+.+|
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  110 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA  110 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence            4556889999999999999999999999999999999999999999999999           9999999998876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.02  E-value=1.3e-05  Score=75.24  Aligned_cols=61  Identities=21%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.++++++|.++.+|.++|.||..+|++.+|+..+.++
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   99 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL   99 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4555556666666666666666666666666666666666666666666666666555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.02  E-value=1.8e-05  Score=67.19  Aligned_cols=63  Identities=21%  Similarity=0.244  Sum_probs=59.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP-NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+|..+...|..++..|+|..|+..|.++|.++| .+..+++++|.||+.+|+|.+|+..+.+|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            3478899999999999999999999999999999 89999999999999999999999999876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.01  E-value=4.9e-06  Score=78.59  Aligned_cols=65  Identities=5%  Similarity=-0.106  Sum_probs=58.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+..+|..++..|+|.+|+.+|.+||.++|.++.+|+||+.|+..+|++.+|+..+++|
T Consensus       162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999998876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.00  E-value=1.5e-05  Score=60.25  Aligned_cols=62  Identities=11%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+.|.+       +.+|+++|.+|..+|++.+|+..+.++
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            46788999999999999999999999999998877       899999999999999999999998775

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=98.00  E-value=2.9e-05  Score=64.80  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             cEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec---------------------ceEEeecccCCcccCCceEEe
Q psy5819           8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG---------------------NYIFEKLLLRPIVEEASRIRL   66 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~---------------------~~~~~~~L~~~Id~e~S~~~i   66 (296)
                      +++.+|++.+.|.+.|||+...+++|.+.++.|.|+..                     .|.-.+.|...||++..++++
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~  138 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF  138 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence            89999999999999999999999999999999999652                     122356799999999999999


Q ss_pred             eCCEEEEEEeecCcc
Q psy5819          67 ENNEAEFELIKSEQA   81 (296)
Q Consensus        67 ~~~~v~i~L~K~~~~   81 (296)
                      .+|.|.|+|.|++..
T Consensus       139 ~nGvL~I~lpK~~~~  153 (161)
T 4eld_A          139 ENGVLSVILPKAESS  153 (161)
T ss_dssp             ETTEEEEEEEBCGGG
T ss_pred             ECCEEEEEEEcCCCC
Confidence            999999999998653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.99  E-value=3.5e-05  Score=57.44  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=53.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++..+|.++.++.+.|.+|..+|++.+|+..+.++
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456677788888888899999999999999888888888888999999999999988887764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.99  E-value=1.8e-05  Score=70.20  Aligned_cols=62  Identities=18%  Similarity=0.125  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.++|.+..+|.++|.||..+|++.+|+..+.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            45555566666666666666666666666666666666666666666666666666655543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.99  E-value=2.7e-05  Score=64.87  Aligned_cols=63  Identities=13%  Similarity=-0.011  Sum_probs=58.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----------------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~----------------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.+.|.+.                .+++|+|.||+.+|++.+|+..+.+|
T Consensus        69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4578899999999999999999999999999888766                99999999999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.99  E-value=1.8e-05  Score=80.90  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -....+..+.+.|+.++..|+|.+|+.+|.+||+++|+++.+|+|+|.+|..+|++.+|+..+.+|
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345668889999999999999999999999999999999999999999999999999999999876

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.99  E-value=3.8e-05  Score=63.55  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             cCCcEEEeeCCEEEEEEEeCCCCCCcceEEe-eccEEEEeec--------------------ceEEeecccCCcccCCce
Q psy5819           5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFT-SESYIKLHYG--------------------NYIFEKLLLRPIVEEASR   63 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~-~~~~lkv~~~--------------------~~~~~~~L~~~Id~e~S~   63 (296)
                      .|.+.|.++++.+.|.+.|||+...+++|.+ .++.|.|+..                    .|.-.+.|...|+++..+
T Consensus        43 ~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~  122 (151)
T 1gme_A           43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK  122 (151)
T ss_dssp             GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred             CCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceE
Confidence            4789999999999999999999999999999 4678888752                    123366799999999999


Q ss_pred             EEeeCCEEEEEEeecCc
Q psy5819          64 IRLENNEAEFELIKSEQ   80 (296)
Q Consensus        64 ~~i~~~~v~i~L~K~~~   80 (296)
                      +++.+|.|.|+|.|..+
T Consensus       123 A~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          123 AGLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEEETTEEEEEEECCCC
T ss_pred             EEEECCEEEEEEEccCc
Confidence            99999999999999865

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.97  E-value=1e-05  Score=69.77  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      +...|..++..|+|..|+..|.++++.+|.++.++.++|.||+.+|+|.+|+..+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~   61 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE   61 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.95  E-value=2.7e-05  Score=66.62  Aligned_cols=62  Identities=18%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++...|.++   .+++++|.||+++|+|.+|+..+.++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~   67 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   67 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            367788999999999999999999999999998764   78999999999999999999998765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.95  E-value=6e-05  Score=56.16  Aligned_cols=61  Identities=21%  Similarity=0.318  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.+..++.++|.+|..+|++.+|+..+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999999999999999999888765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.94  E-value=3.1e-05  Score=65.59  Aligned_cols=60  Identities=22%  Similarity=0.362  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+ .++.+|.++|.||+.+|++.+|+..+.+|
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   64 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDA   64 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            6789999999999999999999999999999 99999999999999999999999998875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=4.1e-05  Score=64.81  Aligned_cols=59  Identities=31%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.||+.+|++.+|+..+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555544443

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.90  E-value=9.2e-05  Score=57.52  Aligned_cols=72  Identities=15%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEe-eCCEEEEE
Q psy5819           9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRL-ENNEAEFE   74 (296)
Q Consensus         9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i-~~~~v~i~   74 (296)
                      .+.++++.+.|.+.|||+.+.+++|.+.++.|.|+..        .     |.-.+.|...||++.-++++ .+|.|.|+
T Consensus         6 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~   85 (106)
T 3l1e_A            6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFS   85 (106)
T ss_dssp             EEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEE
T ss_pred             EEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEE
Confidence            5789999999999999999999999999999999862        1     22266799999999999999 79999999


Q ss_pred             EeecCc
Q psy5819          75 LIKSEQ   80 (296)
Q Consensus        75 L~K~~~   80 (296)
                      |.|..+
T Consensus        86 ~PK~~~   91 (106)
T 3l1e_A           86 GPKIPS   91 (106)
T ss_dssp             EEBCCC
T ss_pred             EEccCc
Confidence            999875

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.88  E-value=5e-05  Score=58.51  Aligned_cols=74  Identities=8%  Similarity=0.050  Sum_probs=64.3

Q ss_pred             cEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEe-eCCEEEE
Q psy5819           8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRL-ENNEAEF   73 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i-~~~~v~i   73 (296)
                      .+|.++++.+.|.+.|||+.+.+++|.+.++.|.|+..        .     |.-.+.|...||++..++++ .+|.|.|
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I   83 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI   83 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence            56889999999999999999999999999999998762        1     23366799999999999999 7999999


Q ss_pred             EEeecCcc
Q psy5819          74 ELIKSEQA   81 (296)
Q Consensus        74 ~L~K~~~~   81 (296)
                      +|.|..+.
T Consensus        84 ~lPK~~~~   91 (101)
T 2wj5_A           84 QATPASAQ   91 (101)
T ss_dssp             EECBCCCC
T ss_pred             EEECCCcC
Confidence            99998643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.86  E-value=5.5e-05  Score=65.07  Aligned_cols=63  Identities=11%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||+.+|++.+|+..+.+|.
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            356688999999999999999999999999999999999999999999999999999988763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.86  E-value=4.2e-05  Score=73.95  Aligned_cols=63  Identities=22%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..+++.|+|.+|+..|.+||+++|.++.+|+|+|.+|+.+|+|.+|+..+.+|
T Consensus        38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999999999999999876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.86  E-value=6.3e-05  Score=64.54  Aligned_cols=62  Identities=24%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||+.+|++.+|+..+.++
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  137 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  137 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            46677778888888888888888888888888888888888888888888888888777654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.86  E-value=4.4e-05  Score=62.15  Aligned_cols=62  Identities=15%  Similarity=0.084  Sum_probs=38.3

Q ss_pred             ChHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQ-MFRDGNY--LGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~-~fk~g~y--~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|.. ++..|+|  ..|+..|.+++.++|.++.++.++|.+|+.+|++.+|+..+.+|
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            34555566666 5566666  66666666666666666666666666666666666666655543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.86  E-value=5.5e-06  Score=61.67  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ..+..+...|..++..|+|.+|+..|.++|.++|.+      ..++++++.|+..+|++..|+.++.
T Consensus        36 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           36 QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            357889999999999999999999999999999998      8999999999999999887776544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.85  E-value=1.2e-05  Score=66.13  Aligned_cols=60  Identities=8%  Similarity=0.047  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|.+|+..|.+++..+|+++.++.++|.+|+.+|++.+|+..+.++
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a   66 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI   66 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            347889999999999999999999999999999999999999999999999999988775

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.84  E-value=6.2e-05  Score=64.59  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.+|..+|++.+|+..+.+|
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999999999998876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.81  E-value=4.3e-05  Score=70.81  Aligned_cols=63  Identities=19%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.++++++|.++.++.++|.||..+|++.+|+..+.++
T Consensus        58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV  120 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            446677777777777888888888888888777777777777888888888888877777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.80  E-value=5.7e-06  Score=80.10  Aligned_cols=61  Identities=28%  Similarity=0.446  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|+.++..|+|.+|+..|.+||+++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   66 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA   66 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445677888999999999999999999999999999999999999999999999999886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.79  E-value=8.2e-05  Score=60.49  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHcCCH--HHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAA-HLALNNL--HKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~-~lkl~~~--~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.| |+..|++  .+|+..+.++
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a  107 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA  107 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999 8899999  9999988765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.77  E-value=4.7e-05  Score=76.74  Aligned_cols=65  Identities=15%  Similarity=0.016  Sum_probs=60.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..++..|+|.+|+..|.++|+++|+++.+|+|+|.+|+.+|+|.+|+.++.+|
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  493 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEV  493 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.77  E-value=0.00011  Score=55.88  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=55.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC-------PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~-------p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++......|..+|..|+|..|+.-|..|++..       ...+.+|.+.|.||+++|++..|+.-..+|
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            46788999999999999999999999999863       346789999999999999999999877765

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.77  E-value=8.7e-05  Score=55.83  Aligned_cols=69  Identities=4%  Similarity=0.015  Sum_probs=56.6

Q ss_pred             eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEe-eCCEEEEEEee
Q psy5819          12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRL-ENNEAEFELIK   77 (296)
Q Consensus        12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i-~~~~v~i~L~K   77 (296)
                      .|++.+.|++.|||+.+.+++|.+.++.|.|+..        .     |.-.+.|...|+++..++++ .++.|.|+|.|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            4778999999999999999999999999998763        1     23366799999999999999 79999999999


Q ss_pred             cCc
Q psy5819          78 SEQ   80 (296)
Q Consensus        78 ~~~   80 (296)
                      ...
T Consensus        83 ~~~   85 (90)
T 2y1y_A           83 KQV   85 (90)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.77  E-value=0.00015  Score=53.93  Aligned_cols=68  Identities=9%  Similarity=0.073  Sum_probs=59.5

Q ss_pred             EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-------------ceEEeecccCCcccCCceEEee-CCEEEEEEe
Q psy5819          11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-------------NYIFEKLLLRPIVEEASRIRLE-NNEAEFELI   76 (296)
Q Consensus        11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-------------~~~~~~~L~~~Id~e~S~~~i~-~~~v~i~L~   76 (296)
                      ++|++.+.|.+.|||+.+.+++|.+.++.|.|+..             .|.=.+.|...||++.-++++. ++.|.|+|.
T Consensus         3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            47899999999999999999999999999999862             1222667999999999999998 999999999


Q ss_pred             ec
Q psy5819          77 KS   78 (296)
Q Consensus        77 K~   78 (296)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.76  E-value=0.0001  Score=66.53  Aligned_cols=64  Identities=16%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.||..+|++.+|+..+.++
T Consensus        96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  159 (365)
T 4eqf_A           96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNW  159 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            3457888999999999999999999999999999999999999999999999999999988765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.74  E-value=6.3e-05  Score=68.03  Aligned_cols=61  Identities=10%  Similarity=0.000  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..+++.|+|..|+..|.+++..+|.++.+|.++|.+|..+|++.+|+..+.+|
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  125 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC  125 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4558899999999999999999999999999999999999999999999999999999876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.73  E-value=0.00017  Score=57.35  Aligned_cols=62  Identities=16%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++..+|.++.++.+.|.+|..+|++.+|+..+.++
T Consensus       109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.72  E-value=0.00021  Score=56.90  Aligned_cols=60  Identities=15%  Similarity=-0.017  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.++.++.++|.+++.+|++.+|+..+.+
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            344444455555555555555555555555555555555555555555555555544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.72  E-value=0.00014  Score=60.02  Aligned_cols=63  Identities=11%  Similarity=-0.036  Sum_probs=51.6

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL-NNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl-~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.+|..+ |++.+|+..+.++
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            44667777888888888888888888888888888888888888888888 8888888877664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.71  E-value=0.00011  Score=68.59  Aligned_cols=62  Identities=11%  Similarity=0.004  Sum_probs=56.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL---------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~---------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|.+|+.+|.+|+++         +|..+..|.|+|.+|..+|+|.+|+..+.+|
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV  120 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4667888999999999999999999999986         6678899999999999999999999998875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.69  E-value=0.00012  Score=65.52  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|++.+|+..|.+++..+|+++.+++++|.+++.+|++.+|+..+.++
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            46778999999999999999999999999999999999999999999999999999988765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.68  E-value=0.00017  Score=63.21  Aligned_cols=65  Identities=22%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ...+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||..+|++.+|+..+.+|.
T Consensus       233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999998763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.68  E-value=0.00011  Score=65.51  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC-------LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~-------ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|.+|+..|.+++.++|.+..       +|.|++.||+.+|++.+|+..+.+|
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788899999999999999999999999987542       7899999999999999999999886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.68  E-value=0.00016  Score=64.92  Aligned_cols=61  Identities=25%  Similarity=0.243  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.+|..+|++.+|+..+.+|
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  277 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA  277 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555555555666666666666666555555555555555555555555555555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.67  E-value=0.00019  Score=53.80  Aligned_cols=63  Identities=19%  Similarity=0.301  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|++..|+..|.+++..+|.+..++.+.|.++..+|++.+|+..+.++
T Consensus        33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   95 (136)
T 2fo7_A           33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA   95 (136)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456778888999999999999999999999999999999999999999999999999888764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.67  E-value=8.2e-05  Score=71.53  Aligned_cols=64  Identities=16%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNY-LGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y-~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+| .+|+..|.+||+++|.++.+|+++|.||+.+|++.+|+..+.+|
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35688999999999999999 99999999999999999999999999999999999999999876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.66  E-value=0.00024  Score=53.21  Aligned_cols=64  Identities=19%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|+|..|+..|.+++...|.+..++.++|.+|..+|++.+|+..+..+
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            3456778889999999999999999999999999999999999999999999999999888765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.66  E-value=0.00016  Score=64.82  Aligned_cols=65  Identities=22%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.+|+.+|++.+|+..+.+|
T Consensus       247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  311 (368)
T 1fch_A          247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  311 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999998876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.64  E-value=0.00013  Score=71.11  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=52.2

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ....+..+...|..++..|+|.+|+..|.++++++|.++.+|+|+|.||..+|++.+|+..+.+|
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34457777888888888888888888888888888888888888888888888888888877765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.62  E-value=0.00031  Score=52.89  Aligned_cols=64  Identities=17%  Similarity=0.086  Sum_probs=57.7

Q ss_pred             CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~---y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..++   ..+|...+.+||.++|+++.+++..|..++..|+|.+|+..+.++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3468899999999976665   799999999999999999999999999999999999999988764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.61  E-value=0.00029  Score=59.84  Aligned_cols=63  Identities=14%  Similarity=-0.018  Sum_probs=55.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++..+|.+..++.++|.+|+.+|++.+|+..+.++
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  131 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA  131 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            346778888999999999999999999999999999999999999999999999998888765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00017  Score=67.56  Aligned_cols=61  Identities=30%  Similarity=0.449  Sum_probs=57.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|+.+++.|+|..|+..|++++..+| ++.+|.++|.||+.+|++.+|+..+.+|
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            467899999999999999999999999999999 6999999999999999999999999876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.60  E-value=0.0003  Score=59.04  Aligned_cols=60  Identities=13%  Similarity=0.033  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.++.++|.+|+.+|++.+|+..+.+
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK  116 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.60  E-value=0.00013  Score=66.69  Aligned_cols=62  Identities=26%  Similarity=0.297  Sum_probs=43.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+++.|+|.+|+..|.+++.++|++..+|.+++.++..+|++.+|+..+.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  127 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666677777777777777777777777777777777777777777777777776666543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.58  E-value=0.00025  Score=62.71  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++..+...|..++..|+|..|+..|.+++..+|.++.+++++|.||+.+|++.+|+..+.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.57  E-value=0.00031  Score=57.98  Aligned_cols=64  Identities=8%  Similarity=0.012  Sum_probs=52.2

Q ss_pred             CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRD-GNYLGAVSAYSHGLQ--LCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~-g~y~~Ai~~Yt~AI~--~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++.. |+|..|+..|.+++.  ..|.+..++.++|.||..+|++.+|+..+.++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34567778888888888 888888888888888  56666788888888888888888888887764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.57  E-value=0.00036  Score=58.51  Aligned_cols=61  Identities=11%  Similarity=0.050  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.++.++.++|.+|+.+|++.+|+..+.++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  151 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA  151 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4555556666666666666666666666666666666666666666666666666555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.56  E-value=0.00033  Score=61.25  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.++.++.++|.+|+.+|++.+|+..+.+
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  265 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR  265 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            444555555555566666666666666666665555666666666666666666555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.55  E-value=0.00012  Score=70.31  Aligned_cols=64  Identities=19%  Similarity=0.066  Sum_probs=58.9

Q ss_pred             CCChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRD--------GNYLGAVSAYSHGLQLCP---NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~--------g~y~~Ai~~Yt~AI~~~p---~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..        |+|.+|+.+|.+|+.++|   .++.+|+|+|.||..+|+|.+|+..+.+|
T Consensus       210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34578889999999998        999999999999999999   99999999999999999999999998876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.55  E-value=0.00022  Score=69.39  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL---NNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl---~~~~~Ai~D~~~A  295 (296)
                      .++..+...|..++..|+|.+|+..|.++++++|.++.++.|++.+|..+   |++.+|+..+.++
T Consensus        89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666   6666666666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.53  E-value=7.7e-05  Score=75.18  Aligned_cols=61  Identities=15%  Similarity=-0.008  Sum_probs=37.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ..++..+...|..++..|+|.+|+..|.+||+++|+++.+|+|+|.||..+|+|.+ +..+.
T Consensus       464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence            34466777777777777777777777777777666555555555444444444444 44443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.51  E-value=2.3e-05  Score=60.07  Aligned_cols=49  Identities=20%  Similarity=0.112  Sum_probs=42.0

Q ss_pred             HcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         247 RDGNYLGAVSAYSHGLQL---CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       247 k~g~y~~Ai~~Yt~AI~~---~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..|+|..|+..|.++|.+   +|.++.++.|+|.||+.+|+|.+|+..+.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   53 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG   53 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            468999999999999999   6889999999999999999999999999876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.50  E-value=0.00021  Score=60.68  Aligned_cols=61  Identities=16%  Similarity=0.048  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++..+|.++.++.++|.+|+.+|++.+|+..+.++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999999999999999999999988765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.49  E-value=0.00042  Score=49.27  Aligned_cols=51  Identities=27%  Similarity=0.356  Sum_probs=47.3

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN  283 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~  283 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.++.|++.++..+|
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            346788999999999999999999999999999999999999999998875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.49  E-value=0.00039  Score=64.22  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=60.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..+++.|+|..|+..|.+++..+|.++.+|+++|.||+.+|++.+|+..+.+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34457889999999999999999999999999999999999999999999999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.49  E-value=0.00024  Score=61.56  Aligned_cols=61  Identities=18%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHH--------cCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLA--------LNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lk--------l~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.++|.+.|.   .+.+++++|.||+.        +|++.+|+..+.++
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~  123 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF  123 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence            778999999999999999999999999999885   46789999999999        99999999998865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.48  E-value=0.00041  Score=60.74  Aligned_cols=61  Identities=18%  Similarity=-0.074  Sum_probs=34.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+..+...|..++..|+|..|+..|.+++.+.|.+...+.++|.+|..+|++.+|+..+.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.47  E-value=0.0002  Score=63.58  Aligned_cols=62  Identities=11%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALN-NLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~-~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..++..|+|..|+..|.+||.+.+..      +.+|.|+|.||.++| ++.+|+..+.+|
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            35678899999999999999999999999887543      799999999999999 579999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.46  E-value=0.00043  Score=59.04  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=51.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...|..+++.|+|.+|+..|.++|+..|+++   .++.+++.||.++|++.+|+..+..+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4678899999999999999999999999876   67999999999999999999887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.46  E-value=0.00031  Score=57.50  Aligned_cols=64  Identities=11%  Similarity=-0.083  Sum_probs=58.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL--ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~--~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|..++..|+|.+|+..|.++|+.+|..  +.++.+.+.++..+|++.+|+..+.++
T Consensus       105 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          105 PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            3457889999999999999999999999999999975  679999999999999999999998875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.45  E-value=0.00021  Score=63.68  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRD-GNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~-g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..+... |+|..|+.+|.+||.+.|..      +.+|.|.|.+|+.+|+|.+|+..+.+|
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  184 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            56788899999996 99999999999999998754      578999999999999999999998875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.45  E-value=0.00047  Score=59.90  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...|..++..|+|..|+..|.+++..+|.+    +.+|.++|.+|+.+|++.+|+..+.+|
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567778999999999999999999999999987    478889999999999999999888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.45  E-value=0.0004  Score=65.63  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS  293 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~  293 (296)
                      ..++..+...|..++..|+|..|+..|.+++.++|.++.++.++|.||..+|++.+|+..+.
T Consensus        56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.45  E-value=0.00047  Score=62.84  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.++|.++.+|.+++.+|..+|++.+|+..+.+|
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.44  E-value=0.0005  Score=62.06  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.+.|.+    +.+|.++|.+|+.+|+|.+|+..+.+|
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   73 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   73 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            346778888999999999999999999999998887    468889999999999999999887765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.44  E-value=0.00058  Score=59.72  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=58.2

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.++.++.++|.+|..+|++.+|+..+.++
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  115 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW  115 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            357788889999999999999999999999999999999999999999999999999988765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.41  E-value=0.00055  Score=60.68  Aligned_cols=61  Identities=10%  Similarity=0.026  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGL---QLCPNL----ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI---~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+|+   ...+.+    +.+|+|.|.||..+|+|.+|+..+.+|
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            5678899999999999999999999999   445553    269999999999999999999998876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.41  E-value=0.00048  Score=62.95  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~----~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.++|.+.    .+|.++|.+|+.+|++.+|+..+.+|
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3467788999999999999999999999999999876    68999999999999999999988765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.35  E-value=0.00045  Score=53.40  Aligned_cols=61  Identities=20%  Similarity=0.118  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.+.+..      +.++.|+|.+|..+|++.+|+..+.+|
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3567778888888999999999999988775542      578888888888888888888877765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.34  E-value=0.00061  Score=61.07  Aligned_cols=62  Identities=10%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHh
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV-DDASE  294 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai-~D~~~  294 (296)
                      .++..+...|..+++.|+|.+|+..|.++|.++|.++.++.|++.++..+|++.+++ ..+.+
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~  260 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ  260 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            357778888888888999999999999999999988888899998888888887654 33343

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.33  E-value=0.00026  Score=62.79  Aligned_cols=61  Identities=10%  Similarity=-0.008  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC-------PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~-------p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+||...       +..+.+|+|.|.+|..+|+|.+|+..+.+|
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4468899999999999999999999999532       234579999999999999999999998876

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=97.31  E-value=0.00067  Score=57.41  Aligned_cols=73  Identities=8%  Similarity=0.030  Sum_probs=60.2

Q ss_pred             cEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEe-eCCEEEE
Q psy5819           8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRL-ENNEAEF   73 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i-~~~~v~i   73 (296)
                      ..+.++++.+.|++.|||+.+.+++|.+.++.|.|+..        .     |.-.+.|...||++..++++ .+|.|.|
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            35778999999999999999999999999999999763        1     22366799999999999999 6999999


Q ss_pred             EEeecCc
Q psy5819          74 ELIKSEQ   80 (296)
Q Consensus        74 ~L~K~~~   80 (296)
                      +|.|+..
T Consensus       146 ~lPK~~~  152 (175)
T 2klr_A          146 NGPRKQV  152 (175)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9999764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.28  E-value=0.00045  Score=53.40  Aligned_cols=61  Identities=21%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.+.+..      +.++.+.|.+|+.+|++.+|+..+.+|
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5567889999999999999999999999886642      368999999999999999999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.27  E-value=0.00041  Score=59.09  Aligned_cols=62  Identities=13%  Similarity=0.040  Sum_probs=56.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+        +|....+|.|+|.+|+.+|++.+|+..+.+|
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677889999999999999999999999988        4677899999999999999999999988775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.25  E-value=0.00048  Score=58.60  Aligned_cols=62  Identities=18%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+        .|....++.+.|.||+.+|++.+|+..+.++
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677889999999999999999999999998        7777899999999999999999999988765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.22  E-value=0.00041  Score=62.20  Aligned_cols=59  Identities=15%  Similarity=0.086  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..+.. |+|..|+.+|.+||.+.+..      +.+|.|.|.+|..+|+|.+|+..+.+|
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555666655 66666666666666655432      456666666666666666666666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.16  E-value=0.00045  Score=61.25  Aligned_cols=60  Identities=12%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKA-VDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~A-i~D~~~A  295 (296)
                      ..+.+.|..++..|+|..|+..|.+||.+.+.      .+.+|+|.|.||..+|++.+| ...+.+|
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            67889999999999999999999999988643      378999999999999999999 4446654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.15  E-value=0.00093  Score=61.13  Aligned_cols=61  Identities=18%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQ-----LC-PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~-----~~-p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..++..|+|..|+..|.+|+.     .+ |..+.++.|.|.+|+.+|++.+|+..+.+|
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45788999999999999999999999999     46 778899999999999999999999988876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.15  E-value=0.00068  Score=60.78  Aligned_cols=51  Identities=18%  Similarity=0.146  Sum_probs=47.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       245 ~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +...|+|.+|+..|.+++..+|.++.+|+|+|.|++++|++.+|+..+.+|
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344589999999999999999999999999999999999999999999876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.14  E-value=0.0007  Score=55.30  Aligned_cols=62  Identities=10%  Similarity=-0.164  Sum_probs=55.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+      .+..+.++.|+|.+|..+|++.+|+..+.+|
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4778899999999999999999999999984      4456789999999999999999999998876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.14  E-value=0.00079  Score=60.33  Aligned_cols=62  Identities=8%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +..+...|..++..|+|.+|+..|.+++.+.+.+      ..++.+++.||+.+|++.+|+..+.+|.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            5678889999999999999999999999986643      3589999999999999999999998763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.05  E-value=0.0024  Score=55.33  Aligned_cols=61  Identities=16%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++.    .|++..|+..|.+|++.+  ++.++++.|.+|..    .+++.+|+..+.+|
T Consensus        36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a  104 (273)
T 1ouv_A           36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA  104 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence            345666677777777    777777777777777765  67777777777777    77777777776654

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=97.05  E-value=0.0026  Score=58.65  Aligned_cols=76  Identities=5%  Similarity=-0.056  Sum_probs=66.0

Q ss_pred             CCcEEEeeCC----EEEEEEEeCCCCCCcceEEeeccEEEEeec------------ceEEeecccCCcccCCceEEee-C
Q psy5819           6 KESCWRQTPS----KVFITVPLYNVPTHKVDVFTSESYIKLHYG------------NYIFEKLLLRPIVEEASRIRLE-N   68 (296)
Q Consensus         6 ~~y~W~QT~~----~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------------~~~~~~~L~~~Id~e~S~~~i~-~   68 (296)
                      |..+.+.+++    .+.|++.|||+.+.+++|.+.++.|.|+..            .|.=.+.|...|+++..++++. +
T Consensus        99 p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n  178 (314)
T 2bol_A           99 FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD  178 (314)
T ss_dssp             GGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS
T ss_pred             CccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC
Confidence            4566778888    899999999999999999999999999863            2333677999999999999999 9


Q ss_pred             CEEEEEEeecCcc
Q psy5819          69 NEAEFELIKSEQA   81 (296)
Q Consensus        69 ~~v~i~L~K~~~~   81 (296)
                      |.|.|+|.|..+.
T Consensus       179 GVL~I~lPK~~~~  191 (314)
T 2bol_A          179 DVLVIEAPVNEPN  191 (314)
T ss_dssp             SEEEEEEEBSSCC
T ss_pred             CEEEEEEeccCcc
Confidence            9999999998754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.03  E-value=0.0019  Score=61.98  Aligned_cols=61  Identities=21%  Similarity=0.091  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..+++.|+|..|+..|.+++.++|.++.+|.+++.+|..+|++.+|+..+.++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.01  E-value=0.001  Score=57.58  Aligned_cols=63  Identities=17%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+..|.+++.+        .+..+.++.++|.+|..+|++.+|+..+.+|
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34678899999999999999999999999985        5667899999999999999999999988775

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.00  E-value=0.0011  Score=60.66  Aligned_cols=61  Identities=8%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+|+.+.+..      +.+|.|+|.||..+|++.+|+..+.+|
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5678889999999999999999999999886532      369999999999999999999998876

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.00  E-value=0.0011  Score=57.33  Aligned_cols=62  Identities=19%  Similarity=0.168  Sum_probs=56.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+        .|..+.++.++|.+|+.+|++.+|+..+.+|
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567888999999999999999999999998        6777889999999999999999999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.99  E-value=0.0015  Score=53.26  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=54.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC----CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL---CP----NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~---~p----~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|..|+..|.+++.+   .+    ..+.++.|.|.+|+.+|++.+|+..+.+|
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3567888999999999999999999999988   33    34578999999999999999999888765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.99  E-value=0.0013  Score=60.23  Aligned_cols=61  Identities=13%  Similarity=-0.018  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQ-----LCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~-----~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..++..|+|..|+..|.+|+.     .+|..+.++.|.|.+|.++|++.+|+..+.+|
T Consensus       222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  287 (378)
T 3q15_A          222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG  287 (378)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56678889999999999999999999998     67777899999999999999999999988775

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.96  E-value=0.002  Score=57.37  Aligned_cols=65  Identities=9%  Similarity=-0.060  Sum_probs=60.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL--ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~--~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...++..+...|..++..|+|.+|+..|.++|..+|++  ..++.+++.++..+|+..+|+..+.++
T Consensus       215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            34567889999999999999999999999999999998  899999999999999999999988775

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.96  E-value=0.0014  Score=49.24  Aligned_cols=43  Identities=7%  Similarity=-0.061  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         253 GAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       253 ~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .|+..|.+++..+|.++.+++++|.+|+.+|+|.+|+..+.+|
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   45 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA   45 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.93  E-value=0.0018  Score=47.11  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=38.1

Q ss_pred             CChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q psy5819         233 NNPD-WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSN  274 (296)
Q Consensus       233 ~~~~-~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~N  274 (296)
                      ..+. .+...|..++..|+|..|+..|.++|.++|.++.++.+
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3467 88999999999999999999999999999999988855

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.83  E-value=0.00067  Score=56.51  Aligned_cols=49  Identities=14%  Similarity=0.039  Sum_probs=44.9

Q ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHhc
Q psy5819         247 RDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL----------HKAVDDASEV  295 (296)
Q Consensus       247 k~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~----------~~Ai~D~~~A  295 (296)
                      +.+.|.+|+.+|.+|+.++|.++.+|.|.+.|++.++++          .+||..+.+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A   72 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   72 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence            457799999999999999999999999999999999886          4999998876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.80  E-value=0.0038  Score=55.67  Aligned_cols=62  Identities=13%  Similarity=-0.076  Sum_probs=46.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC-LYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~-ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|.-+...|++..|+..|.++|++.|.++. +|.+.+.++..+|++.+|+..+.+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4556667777777777777777777777777777765 7777777777777777777776655

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.80  E-value=0.0044  Score=59.43  Aligned_cols=62  Identities=11%  Similarity=0.003  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..+++.|+|.+|+..|.+++.++|.+..+|++++.+|.+.|++.+|+..+.++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46667778888888888888888888888888888888888888888888888888877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.74  E-value=0.0019  Score=58.89  Aligned_cols=60  Identities=18%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQL------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|..|+..|.+++.+      .+..+.++.++|.+|+.+|++.+|+..+.+|
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  152 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH  152 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56889999999999999999999999988      5677899999999999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.68  E-value=0.0031  Score=56.75  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|..|+..|.+++.+.+..      +.++.++|.+|+.+|++.+|+..+.+|
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            355666677777777777777777777665543      566667777777777777776666544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.64  E-value=0.003  Score=54.65  Aligned_cols=61  Identities=20%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.+      .+..+.++.++|.+|+.+|++.+|+..+.+|
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            467788999999999999999999999987      4456789999999999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.59  E-value=0.0027  Score=58.07  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCP------NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p------~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.-+|..++..|+|..|+..|.+|+.+.+      ..+.+|++.|.+|..+|++..|+..+.+|
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            566789999999999999999999998743      35689999999999999999999998876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.52  E-value=0.011  Score=50.96  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++.    .|++..|+..|.+|+..+  ++.+++++|.+|..    .+++.+|+..+.+|
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            57777888888888    899999999999998874  78889999999999    99999999888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.47  E-value=0.0062  Score=60.21  Aligned_cols=66  Identities=6%  Similarity=-0.104  Sum_probs=50.4

Q ss_pred             cCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDG--NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN-NLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g--~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~-~~~~Ai~D~~~A  295 (296)
                      ...++...+..+|-.+.+.|  +|.+|+.+|.++|+++|.+..+|++|+.+...+| .+.++++.++++
T Consensus       102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A          102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            44556677777777777777  6688888888888888888888888888888887 777777777765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.44  E-value=0.0052  Score=58.94  Aligned_cols=62  Identities=10%  Similarity=0.025  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -+..+.+.|..+..+|+|.+|+..|.++|.+        .|+-+..|+|.|..|..+|+|.+|+.-+.+|
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3566788999999999999999999999965        3345689999999999999999999988876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0069  Score=55.63  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=54.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-----------------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-----------------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .|....++|..+++.|+|.+|+..|.++++..+...                 .++.+++.+|..+|+|.+|+..+..+
T Consensus         3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~   81 (434)
T 4b4t_Q            3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS   81 (434)
T ss_dssp             STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            356678899999999999999999999999988532                 46899999999999999999887765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.31  E-value=0.0068  Score=50.03  Aligned_cols=63  Identities=10%  Similarity=-0.068  Sum_probs=56.7

Q ss_pred             CChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDG---NYLGAVSAYSHGLQLC-P-NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g---~y~~Ai~~Yt~AI~~~-p-~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+++...+-|..+.+.+   ++..||..+...++.+ | ....+++|+|.+|+++|+|.+|+..|+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            35778889999999988   7889999999999998 7 56899999999999999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.30  E-value=0.014  Score=57.76  Aligned_cols=53  Identities=8%  Similarity=-0.130  Sum_probs=35.2

Q ss_pred             CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         232 ENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      ..+...+..+|..+...| .|++|+.+|+++|+.+|.+.++|.+|+.++.+++.
T Consensus       140 ~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~  193 (567)
T 1dce_A          140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (567)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence            344556666666666666 66777777777777777777777777776666544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.28  E-value=0.01  Score=44.66  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRA  276 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA  276 (296)
                      ...+..+...|..+|+.|++..|+..|.+|+.++|.+..+..|++
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            345778899999999999999999999999999999999999987

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.26  E-value=0.013  Score=52.22  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             CCChHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMF-------RDGNY-------LGAVSAYSHGLQ-LCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~f-------k~g~y-------~~Ai~~Yt~AI~-~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..++..+...|.-+.       ..|++       ..|+..|.+||. ++|++..+|.+.+.++..+|++.+|+..+.+|
T Consensus        47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            345677777787776       45886       999999999999 79999999999999999999999999988876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.20  E-value=0.017  Score=48.35  Aligned_cols=59  Identities=22%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C----------------------ChHHHHHHHHHHHHcCCHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP---N----------------------LACLYSNRAAAHLALNNLHKAV  289 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p---~----------------------~~~ly~NRA~~~lkl~~~~~Ai  289 (296)
                      ...+.--|+.+|..|+|..|...|.+||.+..   .                      +..+.+.-|.||+++|++..||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            56778889999999999999999999985421   1                      1268899999999999999999


Q ss_pred             HHHH
Q psy5819         290 DDAS  293 (296)
Q Consensus       290 ~D~~  293 (296)
                      .-..
T Consensus       143 ~~Le  146 (167)
T 3ffl_A          143 AILD  146 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.11  E-value=0.0095  Score=57.99  Aligned_cols=62  Identities=5%  Similarity=-0.097  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CC---CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL-----CP---NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~-----~p---~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..+..+|+|.+|+..|.++|.+     .|   .-+..|+|.|..|..+|+|.+|+.-+.+|
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4667888999999999999999999999965     33   35689999999999999999999988876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.89  E-value=0.025  Score=51.64  Aligned_cols=65  Identities=5%  Similarity=-0.200  Sum_probs=58.2

Q ss_pred             CCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHH----HHc---CCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDG--NYLGAVSAYSHGLQLCPNLACLYSNRAAAH----LAL---NNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g--~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~----lkl---~~~~~Ai~D~~~A  295 (296)
                      +......+..+|..+...|  +|.+|+.++..+|..+|++..++++|+.+.    ..+   +++.+++.-|+++
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~  136 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM  136 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence            4455778889999999999  999999999999999999999999999999    777   7899999988775

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.87  E-value=0.022  Score=52.86  Aligned_cols=50  Identities=18%  Similarity=0.125  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA  281 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk  281 (296)
                      ...+..+...|..++..|+|..|+..|.+|++.+|+++.+|.++|.||..
T Consensus       244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999999999988864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.87  E-value=0.013  Score=55.83  Aligned_cols=62  Identities=10%  Similarity=-0.016  Sum_probs=53.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..+..+|+|.+|+..|.++|.+        .|.-+..|+|.|..|..+|+|.+|+.-+.+|
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3567778899999999999999999999965        2335689999999999999999999988876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.85  E-value=0.017  Score=52.16  Aligned_cols=60  Identities=22%  Similarity=0.142  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--------PNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--------p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|..++..|+|..|+..|.+++.+.        |....++.|+|.+|+.+|++.+|+..+.++
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  161 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  161 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            446788999999999999999999999875        335678899999999999999999888765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.66  E-value=0.063  Score=42.25  Aligned_cols=60  Identities=18%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++.    .+|+..|+..|.+|.+.  .++.+++|.+.+|..    .+++.+|+.-+.+|
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            47788999999998    89999999999999987  678999999999999    99999999988775

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.62  E-value=0.025  Score=47.60  Aligned_cols=59  Identities=14%  Similarity=-0.004  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC----CHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN----NLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~----~~~~Ai~D~~~A  295 (296)
                      ++..+...|..++..|++..|+..|.+|++.  .++.+++|.+.+|.. +    ++.+|+.-+.+|
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            4667777888888888888888888888765  467777778887777 6    777777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.43  E-value=0.036  Score=50.21  Aligned_cols=60  Identities=13%  Similarity=-0.116  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--PN-LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ......|..+-..|++.+|+..|.+++.-.  |. .+.+.+++|.|+.++|+..+|+.-+.++
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356677888888888888888888888544  54 4568888999999999988888877664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.43  E-value=0.039  Score=50.35  Aligned_cols=65  Identities=12%  Similarity=-0.029  Sum_probs=55.1

Q ss_pred             CCCChHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH--HHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQM----FRD---GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH--KAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~----fk~---g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~--~Ai~D~~~A  295 (296)
                      ..++...+..+|..+    ...   +++..++.+|.++|..+|.+..++++|+.+...+|.+.  +++..|+++
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~  172 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV  172 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence            445567788888888    666   78999999999999999999999999999999999988  888887764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.43  E-value=0.068  Score=49.38  Aligned_cols=66  Identities=6%  Similarity=-0.114  Sum_probs=58.8

Q ss_pred             cCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDG--NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN-LHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g--~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~-~~~Ai~D~~~A  295 (296)
                      ...++...+..+|..+...|  +|..++.+|+++|..+|.+..++++|+.+...+|. +.+++..++++
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~  171 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  171 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            35667889999999999888  59999999999999999999999999999999998 68999888764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.41  E-value=0.052  Score=50.59  Aligned_cols=65  Identities=2%  Similarity=-0.165  Sum_probs=58.8

Q ss_pred             CCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc-C-CHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL-N-NLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl-~-~~~~Ai~D~~~A  295 (296)
                      +......+..+|..+...| .+.+|+..++.+|..+|++..++++|..|...+ + ++.+++.-|+++
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  151 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS  151 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            4456788889999999999 599999999999999999999999999999998 8 899999988876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.31  E-value=0.028  Score=47.34  Aligned_cols=60  Identities=5%  Similarity=-0.156  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHh
Q psy5819         235 PDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLA----LNNLHKAVDDASE  294 (296)
Q Consensus       235 ~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lk----l~~~~~Ai~D~~~  294 (296)
                      +..+...|..++.    .+++..|+..|.+|++..+.  ++.+++|.+.+|..    .+++.+|+.-+.+
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            3344444444443    44445555555554444441  24444444444444    4444444444433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.30  E-value=0.061  Score=48.39  Aligned_cols=61  Identities=11%  Similarity=0.092  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-----LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|+|..|+..|.+++.+.+.     ...+|.++|.++...|++.+|+..+.++
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455677899999999999999999999998875     3578999999999999999999888765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.20  E-value=0.031  Score=54.38  Aligned_cols=58  Identities=19%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----C---CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLC-----P---NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~-----p---~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.+.+..+..+|+|.+|+..|.++|.+.     +   .-+..+.|.|.+|..+|+|.+|+.-+.+|
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3455666778999999999999999752     2   34589999999999999999999988776

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=95.18  E-value=0.05  Score=50.03  Aligned_cols=66  Identities=9%  Similarity=0.070  Sum_probs=55.8

Q ss_pred             eCCEEEEEEEe-CCCCCCcceEEeeccEEEEeec------ce--------EE--eecccCCcccCCceEEeeCCEEEEEE
Q psy5819          13 TPSKVFITVPL-YNVPTHKVDVFTSESYIKLHYG------NY--------IF--EKLLLRPIVEEASRIRLENNEAEFEL   75 (296)
Q Consensus        13 T~~~V~i~V~l-~~~~~~~~~V~~~~~~lkv~~~------~~--------~~--~~~L~~~Id~e~S~~~i~~~~v~i~L   75 (296)
                      +...+.|.+.| ||+++.+++|.+.++.|.|+..      .|        .|  .+.|...||++.-++++.+|.|.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            44579999999 9999999999999999999862      11        13  56699999999999999999999999


Q ss_pred             eec
Q psy5819          76 IKS   78 (296)
Q Consensus        76 ~K~   78 (296)
                      .|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.051  Score=49.70  Aligned_cols=62  Identities=11%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP------NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p------~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++..|+|.+|+..|.+++....      ..+.+|.+.+.+|+.+|+|.+|...+++|
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            356677889999999999999999999987632      35689999999999999999999888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.68  E-value=0.12  Score=49.28  Aligned_cols=61  Identities=11%  Similarity=-0.011  Sum_probs=47.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +...+...+. +.+.|++..|...|.+++...|.+..++.+.+..++++|++.+|+.-+.+|
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra   72 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC   72 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3455555665 467788888888888888888888888888888888888888888777765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.62  E-value=0.082  Score=50.55  Aligned_cols=61  Identities=11%  Similarity=-0.104  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+...|.-+.+.|++..|...|.++|.+.|.++ .+|.+.+.++..+|++.+|+.-+.+|
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            44444444444455555555555555555555443 34555555555555555555444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.60  E-value=0.096  Score=53.61  Aligned_cols=58  Identities=16%  Similarity=0.185  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      -|-.++.-+...|+|+-|+.+-.+|+...|..-..|++.|.||+.+|+|+.|+--.+.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            5667788888999999999999999999999999999999999999999999876553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.59  E-value=0.012  Score=56.77  Aligned_cols=52  Identities=21%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|+.+|..|.|.+|+.+|+++        ..|.+.|.|+.++|+|.+|++-+.+|
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            36778888888888888888888866        46778888888888888888877765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.49  E-value=0.089  Score=48.58  Aligned_cols=64  Identities=6%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             CCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGN----------YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN--LHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~----------y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~--~~~Ai~D~~~A  295 (296)
                      +.....+..+|..+...|.          |.+++.+++.+|..+|.+..++++|+-+...++.  +.+++..|+++
T Consensus        61 P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           61 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            3445666667766655554          7899999999999999999999999999999994  99999998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.34  E-value=0.079  Score=57.80  Aligned_cols=54  Identities=20%  Similarity=0.307  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ...+...|+.++..|+|.+|+.+|++|        ..|...|.||.++|+|.+|++-+.+|.
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            456678999999999999999999996        589999999999999999999998773

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.30  E-value=0.17  Score=47.49  Aligned_cols=63  Identities=14%  Similarity=-0.038  Sum_probs=56.2

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+..+...|..++..|++.+|+..+.+||.++| +...|.-+|.++.-.|++.+|++.+.+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~A  336 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTA  336 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44577788888888889999999999999999997 4778888999999999999999999876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.29  E-value=0.061  Score=51.40  Aligned_cols=55  Identities=4%  Similarity=-0.052  Sum_probs=45.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         241 KGDQMFRDGNYLGAVSAYSHGLQL-----CPN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~-----~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...-..|+|.+|+..|.++|.+     .|+   -+..|.|.|.+|..+|+|.+|+.-+.+|
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            344444578999999999999975     333   4588999999999999999999988876

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.10  E-value=0.081  Score=39.28  Aligned_cols=38  Identities=13%  Similarity=0.044  Sum_probs=33.9

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL  268 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~  268 (296)
                      ...++..+.-.|+.+|..|+|..||..|.+++..+|..
T Consensus        39 dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           39 EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            34567888899999999999999999999999999974

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.06  E-value=0.084  Score=50.26  Aligned_cols=60  Identities=8%  Similarity=-0.063  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLC-----PN---LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~-----p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+......+..+|+|.+|+..|.++|.+.     |+   -+..+.|.|.+|..+|+|.+|+.-|.+|
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~  355 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT  355 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345556677889999999999999999753     23   3589999999999999999999998876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.92  E-value=0.1  Score=56.91  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      ..+..+...|..+...|+|.+||.+|.+|     +++..|.+.+.|+.++|+|.+|+.-+..||
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45778889999999999999999999776     788999999999999999999999887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.54  E-value=0.087  Score=47.61  Aligned_cols=59  Identities=8%  Similarity=-0.053  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL--ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~--~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .....|..+++.|+|.+|+..|+.++...+..  ..++++.+.++..+|++.+|+..+.+|
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a  197 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA  197 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77889999999999999999999888764322  358999999999999999999998876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.53  E-value=0.11  Score=48.43  Aligned_cols=66  Identities=8%  Similarity=-0.125  Sum_probs=57.3

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-------HHHHHHHHHh
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYL--------GAVSAYSHGLQLCPNLACLYSNRAAAHLALNN-------LHKAVDDASE  294 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~--------~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~-------~~~Ai~D~~~  294 (296)
                      ...++...+..+|-.+.+.|.|.        .++.+++++|+.+|.+..++++|+.+..+++.       +.+++..+.+
T Consensus       154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~  233 (349)
T 3q7a_A          154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK  233 (349)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            34566778888888887777777        99999999999999999999999999999997       7888888876


Q ss_pred             c
Q psy5819         295 V  295 (296)
Q Consensus       295 A  295 (296)
                      |
T Consensus       234 a  234 (349)
T 3q7a_A          234 S  234 (349)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=93.42  E-value=0.28  Score=46.28  Aligned_cols=60  Identities=7%  Similarity=-0.095  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++.    .+++..|+..|.+|++..  ++.+++|.+.+|..    .+++.+|+..+.+|
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            45667777777777    778888888888877753  57777788888887    77888887777665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.35  E-value=0.27  Score=44.98  Aligned_cols=61  Identities=13%  Similarity=-0.011  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP--NLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p--~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .+..+.-.|..++..|++.+|+..|.++|..+|  .+..++.-.+.+|+++|++..|..-+..
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            355667889999999999999999999999997  8899999999999999999999877643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=92.86  E-value=0.11  Score=38.07  Aligned_cols=32  Identities=22%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         264 LCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       264 ~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+|.++.+++++|.+|+.+|+|.+|+..+.+|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   33 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEEL   33 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            47899999999999999999999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.62  E-value=0.21  Score=41.68  Aligned_cols=60  Identities=18%  Similarity=-0.035  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+.+.+..++..|.|..|+-.++.++.+...+         +.++...|.+++..++|..|..-+.+|
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            458999999999999999999999987664322         257888999999999999999988876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.54  E-value=0.44  Score=44.85  Aligned_cols=59  Identities=14%  Similarity=-0.031  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++.    .+++..|+..|.+|+..  .++.++++.+.+|..    .+++.+|+..+.+|
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a  141 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA  141 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            4444455555555    55555555555555543  245555555555555    55555555555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=92.52  E-value=0.3  Score=38.21  Aligned_cols=53  Identities=15%  Similarity=-0.116  Sum_probs=48.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .|.-++..+.+..|+..|.+|.+.  .++.+++|.+.+|+.    .+++.+|+.-+.+|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A   87 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   87 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence            888888888999999999999987  688999999999999    89999999988775

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=92.13  E-value=0.3  Score=46.14  Aligned_cols=61  Identities=7%  Similarity=-0.134  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDG---NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL----NNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g---~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl----~~~~~Ai~D~~~A  295 (296)
                      +..+...|..++..|   ++..|+..|.+|+..++..+..++|.+.+|...    +++.+|+.-+.+|
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a  243 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI  243 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            446778888888888   889999999999988888888888888888765    6888888777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=89.33  E-value=1  Score=42.34  Aligned_cols=58  Identities=7%  Similarity=-0.119  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHH---HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQM---FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN-----NLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~---fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~-----~~~~Ai~D~~~A  295 (296)
                      +..+...|..+   ...|++..|+..|.+|++..  ++.+++|.+.+|. .|     ++.+|+.-+.+|
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            55666777763   35778888888888877554  6777788888777 44     788887777665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.66  E-value=0.99  Score=35.76  Aligned_cols=61  Identities=10%  Similarity=-0.096  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLG---AVSAYSHGLQLC-P-NLACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~---Ai~~Yt~AI~~~-p-~~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      ++..-.+-|-.+.+..+-..   +|..+...++.+ | ..-.+++..|.+|+++|+|..|+..|+.
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34555666666666665544   777777777765 4 3556777788888888888888877764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=87.20  E-value=1.7  Score=35.43  Aligned_cols=46  Identities=17%  Similarity=0.005  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH  279 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~  279 (296)
                      ..+.+...|-.+++.|+|..|..++..+|+++|++..+..-+.++-
T Consensus        70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3567888999999999999999999999999999887766555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.07  E-value=0.76  Score=36.83  Aligned_cols=62  Identities=5%  Similarity=-0.156  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPN-LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~---y~~Ai~~Yt~AI~~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++....+-|-.+.+..+   ...+|..+...++.+|. .-.+++..|.+|+++|+|..|...|+.+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            46667777777777665   46899999999998884 4688888999999999999999988754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=86.35  E-value=1.5  Score=41.00  Aligned_cols=49  Identities=10%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy5819         233 NNPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPNLACLYSNRAAAHLA  281 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~---y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk  281 (296)
                      ..+-.+.-+|..++..++   +..|+.+|.+||+++|+++.+|.-++.||+.
T Consensus       194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~  245 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV  245 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356778889999987665   5899999999999999999999999999974

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.33  E-value=1.9  Score=40.05  Aligned_cols=59  Identities=14%  Similarity=0.031  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+...+..++..|+|..|+.....++..+|-+-.+|.-.-.||+..|+..+|+.-|..+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556777889999999999999999999999999999999999999999999988765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=86.06  E-value=1.1  Score=40.80  Aligned_cols=51  Identities=18%  Similarity=0.063  Sum_probs=41.3

Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819         241 KGDQMFRDG--NYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLALNNLHKAVDDASE  294 (296)
Q Consensus       241 ~Gn~~fk~g--~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lkl~~~~~Ai~D~~~  294 (296)
                      .|...+..|  +|.+|+..|.++....|+  ...+++|   |++++|+|.+|..++..
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence            343355556  999999999999988886  4567777   99999999999988753

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=85.74  E-value=3.3  Score=30.14  Aligned_cols=30  Identities=13%  Similarity=0.234  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +..+..+|..+=+.|+|.+|+.+|..||+.
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            566778888888999999999999999853

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=84.61  E-value=2.1  Score=41.02  Aligned_cols=47  Identities=13%  Similarity=0.066  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA  288 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~A  288 (296)
                      .+...|+.+++.|+|++|+.+|.+|.     ++..|.+-+.++..+|+|..|
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHH
Confidence            46678999999999999999999992     445555544444444444444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.53  E-value=1.6  Score=35.42  Aligned_cols=63  Identities=5%  Similarity=-0.146  Sum_probs=51.5

Q ss_pred             CChHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNY---LGAVSAYSHGLQLCPN-LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y---~~Ai~~Yt~AI~~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++....+-+-.+.+..+-   ..+|..+...++.+|. .-.+++..|.+|+++|+|..|...|+..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l  103 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  103 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4567777788888877754   5899999999998884 5578888999999999999999988753

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=84.46  E-value=4.2  Score=29.47  Aligned_cols=30  Identities=10%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      +..+..+|..+=+.|+|.+|+.+|..||+.
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            556778888888999999999999999853

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.78  E-value=3.5  Score=32.52  Aligned_cols=45  Identities=18%  Similarity=0.000  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH  279 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~  279 (296)
                      -+.+...|-.+|+.|+|..|..+....|++.|.+..+..-+.++.
T Consensus        74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            466888899999999999999999999999999987776655543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=82.56  E-value=1.7  Score=39.50  Aligned_cols=62  Identities=16%  Similarity=0.028  Sum_probs=53.3

Q ss_pred             ChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRD-----GNYLGAVSAYSHGLQLCPNL-ACLYSNRAAAHLA-LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~-----g~y~~Ai~~Yt~AI~~~p~~-~~ly~NRA~~~lk-l~~~~~Ai~D~~~A  295 (296)
                      ....+.-.|.-+.+.     |+.+.|..+|.+||.++|+. ...++..|.-++. .|++..|..-+.+|
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            456777888888884     99999999999999999974 8888889998888 59999999888776

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.91  E-value=2.2  Score=31.29  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      ..+..+..+|-.+=..|+|.+|+.+|..||++
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34667888899999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	5e-10
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	8e-10
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	9e-07
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 5e-10
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 19/106 (17%)

Query: 10  WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGN-----------------YIFEKL 52
           + + P  V + V +  +      V   E    L +                   + ++  
Sbjct: 25  YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK 84

Query: 53  LLRPIVEEASRIRLENNEAEFELIKSEQAMWD--EKKDKRSKEAVS 96
           L   I  E        +  +  L K +   W   E    R   A  
Sbjct: 85  LRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVGGASG 130

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 8e-10
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRI 64
          W QT S+V IT+ + NV  + V+V  SE  +          +Y  +  LL PI+ E S  
Sbjct: 7  WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66

Query: 65 RLENNEAEFELIKSEQAMWD 84
          ++ + + E +L K E   W+
Sbjct: 67 KVLSTKIEIKLKKPEAVRWE 86

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 9e-07
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
          W      VFI   + +     V+   S+       G     ++ E  L   I    S+ +
Sbjct: 8  WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67

Query: 66 LENNEAEFELIKSEQAMW 83
            +      L K E    
Sbjct: 68 RTDRSILCCLRKGESGQS 85

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 9   CWRQTPSKVFITVPLY--NVPTHKVDVFTSESYIKL-----HYGNYIFEKLLLRPIVEEA 61
            W Q  + + + VP+    V   +V V  S S I++     +    + E  L   I  E+
Sbjct: 23  TWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES 82

Query: 62  SRIRLENNEAEFELIKSEQAMW 83
           S   LE  +     +      W
Sbjct: 83  SLWSLEPGKCVLVNLSKVGEYW 104

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 18/81 (22%), Positives = 31/81 (38%)

Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
           L+++    +A       LR    + D +    +     GN   AV  Y   L++ P  A 
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 271 LYSNRAAAHLALNNLHKAVDD 291
            +SN A+       L +A+  
Sbjct: 341 AHSNLASVLQQQGKLQEALMH 361

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
           P  ++P   + +G +  ++G+   AV  +   +Q  P     +               A+
Sbjct: 15  PLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 290 D 290
            
Sbjct: 74  S 74

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
                 +G    A+      ++  P  A L S+         +  +A +
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.8
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.71
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.68
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.67
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.63
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.57
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.55
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.19
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.18
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.15
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.07
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.99
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.79
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.62
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.54
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.21
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.25
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.94
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	89.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.75
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	84.97
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	83.7

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.5e-20  Score=139.27  Aligned_cols=81  Identities=31%  Similarity=0.432  Sum_probs=76.6

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ   80 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~   80 (296)
                      .+|+|+||.+.|+|+|++||+...++.|.++..+|+|++.     +|.|+++||++|+|++|+|++.+++|+|+|.|+++
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~~~   82 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEA   82 (92)
T ss_dssp             CCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECSSC
T ss_pred             CceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEECCC
Confidence            4799999999999999999999999999999999988763     58999999999999999999999999999999999


Q ss_pred             cccccc
Q psy5819          81 AMWDEK   86 (296)
Q Consensus        81 ~~W~~L   86 (296)
                      ++|++|
T Consensus        83 ~~W~~L   88 (92)
T d1rl1a_          83 VRWEKL   88 (92)
T ss_dssp             CCCSSS
T ss_pred             CcCcCc
Confidence            999998

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.4e-18  Score=137.86  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=86.0

Q ss_pred             cCCcEEEeeCCEEEEEEEeC---CCCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeec
Q psy5819           5 VKESCWRQTPSKVFITVPLY---NVPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKS   78 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~---~~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~   78 (296)
                      .|+|+|+||.++|.|+|+++   +++.+++.|.++.++|+|.+.  +.++.+.||++|++++|+|+|+++ .++|+|.|+
T Consensus         7 ~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied~~~l~i~L~K~   86 (131)
T d1wfia_           7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKI   86 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEBS
T ss_pred             CCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeCCCEEEEEEEEC
Confidence            48999999999999999875   677899999999999999874  467899999999999999999875 679999999


Q ss_pred             Ccc-ccccc-c----chhhhH--HHHHhhhhcHHHHHHHH
Q psy5819          79 EQA-MWDEK-K----DKRSKE--AVSVQMKLETQEQTDVS  110 (296)
Q Consensus        79 ~~~-~W~~L-k----~e~~k~--~~~~~~~le~e~R~~ie  110 (296)
                      .++ +|++| +    .+-.+.  ....|.+||+|++.+|.
T Consensus        87 ~~~~~W~~l~~gd~~id~~~~~~~~~~l~d~D~et~~~i~  126 (131)
T d1wfia_          87 NKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVS  126 (131)
T ss_dssp             SSCCCCSCSBSSCCSCCCSSSSCCCCSCCCCCCCCCCCCC
T ss_pred             CCCccCHHHcCCCCCCCHhHcCcccCCCccCCHHHHHhhh
Confidence            876 69999 1    111111  12346789988887764

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-17  Score=129.80  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819           4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus         4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      ..+.|.|+||.+.|+|+|++|++.  ++.|.++...+.|++.      .|.++++||++|++++|+|++.+++|+|+|.|
T Consensus         2 ~p~~~~W~Qt~~~V~i~I~v~~~~--~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K   79 (110)
T d1ejfa_           2 QPASAKWYDRRDYVFIEFCVEDSK--DVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRK   79 (110)
T ss_dssp             BCCCEEEEECSSEEEEEECCTTEE--EEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCcEEEECCCEEEEEEEeCCCC--CceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEE
Confidence            346799999999999999999864  5666666666666542      48899999999999999999999999999999


Q ss_pred             cCcc-ccccc
Q psy5819          78 SEQA-MWDEK   86 (296)
Q Consensus        78 ~~~~-~W~~L   86 (296)
                      ++++ +|++|
T Consensus        80 ~~~~~~W~~L   89 (110)
T d1ejfa_          80 GESGQSWPRL   89 (110)
T ss_dssp             SSTTCCCSSS
T ss_pred             cCCCCCCCce
Confidence            9987 59999

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=126.71  Aligned_cols=82  Identities=22%  Similarity=0.280  Sum_probs=70.2

Q ss_pred             cCCcEEEeeCCEEEEEEEeC-C-CCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819           5 VKESCWRQTPSKVFITVPLY-N-VPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIK   77 (296)
Q Consensus         5 ~~~y~W~QT~~~V~i~V~l~-~-~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K   77 (296)
                      ...|+|+||.++|+|+|+|+ + ++.+++.|.++..+|+|.+.     +|+|+++||++|++++|+|+|.++++++.|.|
T Consensus        19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lk   98 (124)
T d1wgva_          19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLS   98 (124)
T ss_dssp             CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEEC
T ss_pred             CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence            46899999999999999998 4 45689999999999998863     57899999999999999999999877665555


Q ss_pred             c-Cccccccc
Q psy5819          78 S-EQAMWDEK   86 (296)
Q Consensus        78 ~-~~~~W~~L   86 (296)
                      + ...+|++|
T Consensus        99 K~~~~~W~~L  108 (124)
T d1wgva_          99 KVGEYWWNAI  108 (124)
T ss_dssp             BSSSCCCSCS
T ss_pred             ecCCCcChhh
Confidence            4 44569999

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=127.81  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=75.5

Q ss_pred             CCcEEEeeC-CEEEEEEEeCCCCCCcceEEeeccEEEEeec-----------------ceEEeecccCCcccCCceEEee
Q psy5819           6 KESCWRQTP-SKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----------------NYIFEKLLLRPIVEEASRIRLE   67 (296)
Q Consensus         6 ~~y~W~QT~-~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----------------~~~~~~~L~~~Id~e~S~~~i~   67 (296)
                      -+|.|+|+. +.|+|+|+++++...+++|.+++.+|.|.++                 .|.+++.||++|+|+.|+|+|.
T Consensus        20 ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v~   99 (134)
T d1wh0a_          20 VKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFT   99 (134)
T ss_dssp             CCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEEC
T ss_pred             cccceeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEEeC
Confidence            378899985 7999999999999999999999999999873                 4788999999999999999999


Q ss_pred             CCEEEEEEeecCccccccc
Q psy5819          68 NNEAEFELIKSEQAMWDEK   86 (296)
Q Consensus        68 ~~~v~i~L~K~~~~~W~~L   86 (296)
                      +++|+|+|.|+++++|++|
T Consensus       100 ~~kiei~L~K~~~~~W~~L  118 (134)
T d1wh0a_         100 ASRIDICLRKRQSQRWGGL  118 (134)
T ss_dssp             SSEEEEEEEESSSCCCSCS
T ss_pred             CCEEEEEEEeCCCCcCcCc
Confidence            9999999999999999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.8e-12  Score=103.97  Aligned_cols=63  Identities=24%  Similarity=0.424  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +++.|++.||.+|+.|+|..|+..|++||.++|.++.+|+|+|.||+++|+|.+|+.+|.+|.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al   65 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL   65 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH
Confidence            378899999999999999999999999999999999999999999999999999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.9e-12  Score=98.05  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+++.|+.+|..|+|..|+.+|++||+++|.++.+|+|||.||.++|+|.+|+.+|.+|
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999886

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.9e-11  Score=93.55  Aligned_cols=61  Identities=33%  Similarity=0.463  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..|+++|+.+|+.|+|.+|+.+|+++|.++|.++.+|+|+|.||+++|+|.+|+.+|.+|
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhH
Confidence            4678999999999999999999999999999999999999999999999999999999876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-10  Score=94.58  Aligned_cols=62  Identities=27%  Similarity=0.441  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..|+.+||.+|+.|+|..|+.+|++||.++|.++.+|+|+|.||+.+|++.+|+.+|.+|
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka   70 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA   70 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999886

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.96  E-value=5.6e-10  Score=91.31  Aligned_cols=63  Identities=29%  Similarity=0.363  Sum_probs=56.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------------LACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..++++|+.+|+.|+|..|+..|++||.+.+.               ...+|+|||.||+++|+|.+|+.+|++|+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            3678999999999999999999999999987553               34789999999999999999999999873

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=1.1e-09  Score=88.34  Aligned_cols=62  Identities=23%  Similarity=0.271  Sum_probs=56.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----------------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----------------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+++.|+.+|+.|+|..|+.+|++||++.+..                ..+|+|||.||+++|+|.+|+.+|.+|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            36789999999999999999999999999877632                368999999999999999999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.2e-09  Score=89.80  Aligned_cols=62  Identities=18%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+.+.|..++..|+|..|+.+|++||+++|.++.+|+|||.||.++|+|.+|+.+|.+|
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kA   96 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA   96 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.3e-09  Score=87.81  Aligned_cols=63  Identities=22%  Similarity=0.320  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---------------ACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---------------~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      .+..++++|+.+|+.|+|..|+..|++||.+.|..               ..+|.|+|.||+++|+|.+|+.+|+.|+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            46789999999999999999999999999997742               3789999999999999999999999873

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.8e-08  Score=77.32  Aligned_cols=65  Identities=23%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|..++..|+|..|+..|.++|+++|.++.+|+|+|.||..+|+|.+|+.++.+|
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG   97 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            45568899999999999999999999999999999999999999999999999999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.9e-08  Score=82.21  Aligned_cols=65  Identities=8%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|..+++.|+|..|+.+|.+||.++|.++.+|+|+|.||+.+|+|.+|+.++.+|
T Consensus        34 ~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.68  E-value=2e-08  Score=80.63  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------------ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~------------~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+..+|+.+|..|+|..|+..|++||.++|..            +.+|+|+|.||.++|+|..|+.+|..|
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            4456778999999999999999999999998763            479999999999999999999999876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=3.8e-08  Score=79.83  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.++|..+++.|+|..||..|++||+++|.++.+|++||.||..+|+|.+|+.++.+|
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence            5567789999999999999999999999999999999999999999999999999999876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=1.5e-08  Score=82.22  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL----------------CPNLACLYSNRAAAHLALNNLHKAVDDASEVR  296 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~----------------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~  296 (296)
                      +..++..|+.+|+.|+|..|+..|++||.+                +|..+.+|+|||.||+++|+|.+||.+|++|+
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            456889999999999999999999999964                34567899999999999999999999999873

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.8e-08  Score=82.59  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=56.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+..+..+|..+++.|+|..|+..|.+||.++|+++.+|+|+|.||..+|++.+|+.++.+|
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHH
Confidence            46788899999999999999999999999999999999999999999999999999998876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.5e-08  Score=72.49  Aligned_cols=62  Identities=11%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +++...+.|..+|+.|+|..|+..|.+||++.|.       .+.+|.|+|.||.++|+|.+|+..+.+|
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            4778899999999999999999999999988654       3689999999999999999999999876

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.57  E-value=1e-07  Score=77.33  Aligned_cols=60  Identities=20%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+.+.|..+++.|+|..|+..|+++|.++|.+..+|++||.||..+|+|.+|+.++.+|
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.55  E-value=9.5e-08  Score=76.54  Aligned_cols=60  Identities=13%  Similarity=0.070  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+.+.|..+++.|+|..|+..|++||.++|.+..+|+++|.||..+|+|..|+.++.+|
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            346689999999999999999999999999999999999999999999999999999876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.55  E-value=1.3e-07  Score=71.75  Aligned_cols=66  Identities=17%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+..+...|..+++.|+|.+|+.+|.+||.++|.++.++.++|.||..+|++.+|+..+.++
T Consensus        45 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          45 KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344567777778888888888888888888888888888888888888888888888887776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2e-07  Score=74.47  Aligned_cols=64  Identities=22%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+..+...|..++..|+|..|+..|.+||+++|.+..+|.++|.||..+|+|.+|+.++.+|
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          41 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4468889999999999999999999999999999999999999999999999999999999876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.47  E-value=2.3e-07  Score=70.35  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .....|..+++.|+|..|+.+|.++|.++|.++.+|.++|.||..+|++.+|+.++.+|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   76 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA   76 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccc
Confidence            34678999999999999999999999999999999999999999999999999999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-07  Score=75.02  Aligned_cols=59  Identities=24%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.+.|..+++.|+|..|+..|++||.++|.++.+|+++|.||..+|+|..|+.++.+|
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.2e-06  Score=73.61  Aligned_cols=64  Identities=23%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+..+...|..++..|+|..|+..|.++|+++|.++.+|.|+|.||..+|++..|+..+.+|
T Consensus        68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4468889999999999999999999999999999999999999999999999999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.7e-06  Score=71.56  Aligned_cols=58  Identities=16%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.++|..++..|+|..|+.+|++   +.+.++.+++|+|.||+.+|+|.+|+.+|.+|
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            45678999999999999999999986   35667899999999999999999999999987

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.7e-06  Score=73.82  Aligned_cols=63  Identities=22%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|..++..|+|..|+.+|.++|+++|.++.+|+|+|.||..+|+|.+|+..+.+|
T Consensus       204 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            356778888988899999999999999999999988889999999999999999998888776

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.7e-06  Score=73.80  Aligned_cols=57  Identities=12%  Similarity=0.126  Sum_probs=31.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++|..+++.|+|..|+.+|.++|+.+|.++.+|.++|.||..+|++..|+..+.+|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   79 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC   79 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Confidence            345555555555555555555555555555555555555555555555555555443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.2e-06  Score=74.38  Aligned_cols=65  Identities=17%  Similarity=0.128  Sum_probs=58.4

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+...|..++..|+|..|+..|.++|+++|.++.+|.++|.||..+|++.+|+..+..+
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence            44567888999999999999999999999999999999999999999999999999999887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=4.8e-06  Score=64.16  Aligned_cols=64  Identities=9%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +.++..+..+|..+++.|+|..|+..|.+||.++|.+.       .+|.++|.++..+++|.+|+..+.++
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34578999999999999999999999999999998754       57778888888999999999988765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.99  E-value=4.6e-06  Score=66.28  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-----------LACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-----------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..+.+.|..+++.|+|..|+..|+++|.+.+.           ...+|+|||.||..+|++++|+.++.+|
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999987542           3468999999999999999999999886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-05  Score=68.93  Aligned_cols=57  Identities=9%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.|+.+|+.|+|..|+..|.++++.+|+++.++.++|.||+.+|+|.+|+..+.+|
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   59 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA   59 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            357999999999999999999999999999999999999999999999999999876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.3e-06  Score=59.45  Aligned_cols=53  Identities=11%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN  283 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~  283 (296)
                      ....+..+...|+.+++.|+|..|+..|.+||+++|+++.++.|++.+.-.|+
T Consensus        42 ~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          42 TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            34457889999999999999999999999999999999999999988765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4e-06  Score=74.39  Aligned_cols=63  Identities=5%  Similarity=-0.116  Sum_probs=35.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+..+|..+...|+|.+|+..|.+||+++|.+..+|+||+.|+..+|+|.+|+.+|++|
T Consensus       110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.6e-05  Score=70.46  Aligned_cols=66  Identities=6%  Similarity=-0.037  Sum_probs=60.2

Q ss_pred             cCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         230 PEENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       230 ~~~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      -++.....+..+|+.+...| +|.+|+..|.++|+++|++..+|.|||.|+..+|++.+|+.++.+|
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ka  138 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  138 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhh
Confidence            34556888999999999876 6999999999999999999999999999999999999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.1e-06  Score=62.62  Aligned_cols=65  Identities=9%  Similarity=-0.072  Sum_probs=55.4

Q ss_pred             CCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         231 EENNPDWVKAKGDQMFRDG---NYLGAVSAYSHGLQLCPNL--ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g---~y~~Ai~~Yt~AI~~~p~~--~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .+.++..+.+.|..+++.+   ++..||..|.++|..+|..  +.+++|+|.||..+|+|.+|+..+.+|
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3456888999999998744   5678999999999998765  458999999999999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=1.8e-05  Score=62.47  Aligned_cols=65  Identities=11%  Similarity=0.026  Sum_probs=54.9

Q ss_pred             CCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-----------HHHHH
Q psy5819         231 EENNPDWVKAKGDQMFRD----------GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN-----------LHKAV  289 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~----------g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~-----------~~~Ai  289 (296)
                      .+.++..+...|..++..          +.+..|+..|.+||+++|+++.+|+|+|.+|..+|.           |..|+
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            456688999999999854          456899999999999999999999999999998764           67777


Q ss_pred             HHHHhc
Q psy5819         290 DDASEV  295 (296)
Q Consensus       290 ~D~~~A  295 (296)
                      ..+.+|
T Consensus       107 ~~~~ka  112 (145)
T d1zu2a1         107 QFFQQA  112 (145)
T ss_dssp             HHHHHH
T ss_pred             hhhhcc
Confidence            777665

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.75  E-value=9.6e-05  Score=56.04  Aligned_cols=74  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             cEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec---------------------ceEEeecccCCcccCCceEEe
Q psy5819           8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG---------------------NYIFEKLLLRPIVEEASRIRL   66 (296)
Q Consensus         8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~---------------------~~~~~~~L~~~Id~e~S~~~i   66 (296)
                      ++..++++.+.|.+.|||+...+++|.+.++.|.|+..                     .|.-.+.|...||.+...+++
T Consensus        13 vdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~   92 (115)
T d1shsa_          13 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF   92 (115)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE
Confidence            78999999999999999999999999999999988741                     112256788999999999999


Q ss_pred             eCCEEEEEEeecCcc
Q psy5819          67 ENNEAEFELIKSEQA   81 (296)
Q Consensus        67 ~~~~v~i~L~K~~~~   81 (296)
                      .+|.|.|+|.|..+.
T Consensus        93 ~nGvL~I~lpK~~~~  107 (115)
T d1shsa_          93 ENGVLSVILPKAESS  107 (115)
T ss_dssp             ETTEEEEEEEBCGGG
T ss_pred             ECCEEEEEEEeCCCC
Confidence            999999999998654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=5.5e-05  Score=61.89  Aligned_cols=61  Identities=13%  Similarity=-0.002  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...|..+...|+|.+|+.++.++|.++|.+..+|.+++.||..+|++.+|+..|.++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999988875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.4e-05  Score=60.13  Aligned_cols=57  Identities=9%  Similarity=-0.007  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHhc
Q psy5819         239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL---NNLHKAVDDASEV  295 (296)
Q Consensus       239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl---~~~~~Ai~D~~~A  295 (296)
                      -+.+|.++..++|..|...|.+||.++|.++.+++|.|.|+++.   +++.+||.-+.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~   62 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL   62 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999974   4566799888765

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.54  E-value=0.00027  Score=56.11  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=62.3

Q ss_pred             CCcEEEeeCCEEEEEEEeCCCCCCcceEEeecc-EEEEeec----------c----------eEEeecccCCcccCCceE
Q psy5819           6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSES-YIKLHYG----------N----------YIFEKLLLRPIVEEASRI   64 (296)
Q Consensus         6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~-~lkv~~~----------~----------~~~~~~L~~~Id~e~S~~   64 (296)
                      |...|.+|++.+.|.+.|||+.+.+++|.+++. .+.++..          .          |.-.+.|...||++..++
T Consensus        43 p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A  122 (150)
T d1gmea_          43 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  122 (150)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEE
Confidence            568999999999999999999999999999764 4555531          1          122567999999999999


Q ss_pred             EeeCCEEEEEEeecCc
Q psy5819          65 RLENNEAEFELIKSEQ   80 (296)
Q Consensus        65 ~i~~~~v~i~L~K~~~   80 (296)
                      ++.+|.|.|+|.|.++
T Consensus       123 ~~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         123 GLENGVLTVTVPKAEV  138 (150)
T ss_dssp             EEETTEEEEEEECCCC
T ss_pred             EEECCEEEEEEEcCCc
Confidence            9999999999999764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=0.00018  Score=58.64  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----------------------ACLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----------------------~~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      -..+...|+.++..|++.+|+..|++||.+.+..                      ..++.+++.+++.+|+|.+|+.+|
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3568899999999999999999999999987642                      268899999999999999999999


Q ss_pred             Hhc
Q psy5819         293 SEV  295 (296)
Q Consensus       293 ~~A  295 (296)
                      .++
T Consensus        91 ~~a   93 (179)
T d2ff4a2          91 EAL   93 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00017  Score=67.63  Aligned_cols=60  Identities=18%  Similarity=0.079  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+...|+.+...|+|..|+..|.+|+.++|++..+|+|+|.+|...|++.+|+..+.+|
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457788999999999999999999999999999999999999999999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.30  E-value=4.7e-05  Score=59.89  Aligned_cols=52  Identities=13%  Similarity=0.034  Sum_probs=44.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHhc
Q psy5819         244 QMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN----------LHKAVDDASEV  295 (296)
Q Consensus       244 ~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~----------~~~Ai~D~~~A  295 (296)
                      .+-+.+.|++|+..|.+||.++|+++.+|+|+|.|++.+++          +.+|+..+.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34566779999999999999999999999999999996544          56788888776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00052  Score=57.75  Aligned_cols=61  Identities=13%  Similarity=0.052  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-----ACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-----~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ++...-+|..++..|+|..|+..|.+||...|.+     ..++.++|.||..+|++.+|+..+..|
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4556667899999999999999999999999875     368889999999999999999988765

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00019  Score=61.99  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP------NLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p------~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      .++.+...|+.+...|+|..|+.+|.+|+.+..      ..+.+|.|.|.||.++|++.+|+..+.+|
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            356688889999999999999999999998732      34589999999999999999999998875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0078  Score=51.24  Aligned_cols=61  Identities=18%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-------CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-------~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...|+.++..|+|..|+..|.+++...+...       ..+.+.+.|++..|++..|...+.++
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45578889999999999999999999999887643       56789999999999999999888765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.0099  Score=49.30  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      +|..+.+.|..+|..|||.+|+..|.+|.+.  .++.+++++|.+|+.    ..++..|+..+..+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            4788999999999999999999999999876  478899999999998    67888888766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0039  Score=52.07  Aligned_cols=61  Identities=7%  Similarity=-0.158  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL------CPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ...+...|..++..|+|..|+..|.+++..      .|..+.++.++|.+|+.+|++.+|+..+.+|
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            455667899999999999999999999854      3446789999999999999999999998876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.00052  Score=59.76  Aligned_cols=56  Identities=5%  Similarity=-0.133  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819         237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA  292 (296)
Q Consensus       237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~  292 (296)
                      +....|..+...|.+..|+..|.++|.++|.+..+|+|||.++..+|++.+|+..+
T Consensus       146 ~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            45567888888999999999999999999999999999999999999988775443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0048  Score=47.28  Aligned_cols=61  Identities=5%  Similarity=-0.161  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         235 PDWVKAKGDQMFRDG---NYLGAVSAYSHGLQLCPNLA-CLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g---~y~~Ai~~Yt~AI~~~p~~~-~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      +..-.+-|-.+.+..   +...||..+..+++.+|... .++++.|.+|+++|+|.+|...|.++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455566676776654   45789999999999998765 79999999999999999999988775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0013  Score=57.13  Aligned_cols=54  Identities=7%  Similarity=-0.242  Sum_probs=28.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       242 Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      |+.+...|++.+|+..|.+++..+|.++.+|.++|.||..+|++.+|+..|.+|
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.94  E-value=0.13  Score=38.91  Aligned_cols=48  Identities=8%  Similarity=-0.069  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q psy5819         235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL  282 (296)
Q Consensus       235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl  282 (296)
                      .+.+...|..+++.|+|..|..++.++|+++|.+..+..-+..+.-++
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999999988777666665443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.32  Score=44.30  Aligned_cols=54  Identities=11%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819         231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN  284 (296)
Q Consensus       231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~  284 (296)
                      .+.++..+.+.|..+...|++.+|+..|.+||.++|.++.++.|.+..+-+..+
T Consensus       182 ~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            345577899999999999999999999999999999999999999988876543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.25  E-value=0.49  Score=38.31  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .+..+...|..++.    .+|+..|+..|.+|.+..  ++.+++|.|.+|..    .+++.+|+..+.+|
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            46778888988877    679999999999998874  68899999999986    44888898888765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.75  E-value=0.94  Score=37.77  Aligned_cols=58  Identities=7%  Similarity=-0.137  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHhc
Q psy5819         238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA-LNNLHKAVDDASEV  295 (296)
Q Consensus       238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk-l~~~~~Ai~D~~~A  295 (296)
                      +..-++-..+.|++..|...|.+|+...|....+|.+.|..... .|++..|..-+..+
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~  195 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG  195 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            44556666667777777777777777777777777766655443 46666666555543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.15  E-value=0.46  Score=33.72  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819         234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL  264 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~  264 (296)
                      .+..+..+|-.+=..|+|..|+.+|..||++
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999854

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.97  E-value=1.4  Score=36.52  Aligned_cols=63  Identities=10%  Similarity=-0.063  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819         233 NNPDWVKAKGDQM-FRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV  295 (296)
Q Consensus       233 ~~~~~lk~~Gn~~-fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A  295 (296)
                      ..+..+...|... ...|++..|...|..++..+|.++.++..-+......|++..|..-+.+|
T Consensus       166 ~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3456666667654 44689999999999999999999999999999999999999988777665

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=83.70  E-value=3.4  Score=29.82  Aligned_cols=60  Identities=18%  Similarity=0.053  Sum_probs=49.4

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhc
Q psy5819         234 NPDWVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA----LNNLHKAVDDASEV  295 (296)
Q Consensus       234 ~~~~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk----l~~~~~Ai~D~~~A  295 (296)
                      .+......|.-++.    ..|+..|+..|.+|.+.  .++.+.++.+.+|+.    ..|+..|+.-+.+|
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            36677778888776    56899999999999876  467888899999998    57899999888765