Psyllid ID: psy5829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKPLI
Secondary Structure (PSIPRED)
cHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEccEEEEEEcccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccEEEEEEcccccHHHHcccccEEEEccccc
Coil and Loop (DISEMBL)
mwcsclsrskflSSLQNSKMAVMMLATVLVFAIVIYFQGfrvdlpiksaryrgqyssypiklfytsnipIILQSALVSNLYVISQMLAVKFHGNIFVNLLGewadvggggparaypigglcyylsppenlGHFLLLLLLRFVNKPLI
Flexible Loop (DISEMBL)
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKPLI
Low Complexity Region (SEG)
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFllllllRFVNKPLI
Disordered region (IsUnstruct)
**CSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVN****
Disordered Region (DISOPRED)
*WCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKPLI
Disordered Region (DISEMBL)
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKPLI
Disordered Region (DISPRO)
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWCSCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRFVNKPLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q5NVM7	476	Protein transport protein	yes	N/A	0.809	0.25	0.806	6e-52
Q9JLR1	476	Protein transport protein	yes	N/A	0.789	0.243	0.818	1e-51
Q9H9S3	476	Protein transport protein	yes	N/A	0.789	0.243	0.818	1e-51
Q2KHX4	476	Protein transport protein	yes	N/A	0.789	0.243	0.818	1e-51
Q90ZM2	476	Protein transport protein	yes	N/A	0.809	0.25	0.764	3e-49
Q90YL4	476	Protein transport protein	yes	N/A	0.809	0.25	0.756	5e-49
Q98SN9	476	Protein transport protein	N/A	N/A	0.809	0.25	0.756	9e-49
Q8AY32	476	Protein transport protein	N/A	N/A	0.809	0.25	0.756	9e-49
P61621	476	Protein transport protein	no	N/A	0.809	0.25	0.747	1e-48
Q5R5L5	476	Protein transport protein	no	N/A	0.809	0.25	0.747	1e-48

>sp|Q5NVM7|S61A2_PONAB Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1

 Score =  202 bits (514), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 107/119 (89%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G  L
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIL 355

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Pongo abelii (taxid: 9601)

>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
           LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Mus musculus (taxid: 10090)

>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
           LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Homo sapiens (taxid: 9606)

>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3

 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
           LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Bos taurus (taxid: 9913)

>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3

 Score =  193 bits (491), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 102/119 (85%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN  VNLLG W+D   GGPARAYP+GGLCYYLSPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Danio rerio (taxid: 7955)

>sp|Q90YL4|S61A2_DANRE Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3

 Score =  192 bits (489), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 102/119 (85%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN  VNLLG W+D   GGPARAYP+GGLCYYLSPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVL 355

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Danio rerio (taxid: 7955)

>sp|Q98SN9|S61A1_ONCMY Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3

 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 102/119 (85%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN  VNLLG W+D   GGPARAYP+GGLCY+LSPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVL 355

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Oncorhynchus mykiss (taxid: 8022)

>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3

 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 101/119 (84%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN  VNLLG W+D   GGPARAYP+GGLCYY SPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVL 355

Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Gadus ogac (taxid: 8052)

>sp|P61621|S61A1_RAT Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2

 Score =  191 bits (486), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN+ V+LLG W+D   GGPARAYP+GGLCYYLSPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355

Plays a crucial role in the insertion of secretory and membrane polypeptides into the ER. Required for assembly of membrane and secretory proteins. Tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5L5|S61A1_PONAB Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3

 Score =  191 bits (486), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQML+ +F GN+ V+LLG W+D   GGPARAYP+GGLCYYLSPPE+ G  L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355

Plays a crucial role in the insertion of secretory and membrane polypeptides into the ER. Required for assembly of membrane and secretory proteins. Tightly associated with membrane-bound ribosomes, either directly or through adapter proteins.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
187177323	476	Sec61 alpha 1 subunit [Acyrthosiphon pis	0.795	0.245	0.905	1e-54
442761513	473	Putative transport protein sec61 alpha s	0.755	0.234	0.927	6e-54
241587669	423	protein transport protein SEC61 alpha su	0.755	0.262	0.927	6e-54
346469489	476	hypothetical protein [Amblyomma maculatu	0.755	0.233	0.936	6e-54
13173171	476	putative transport protein Sec61 alpha s	0.809	0.25	0.865	9e-54
158299950	476	AGAP009182-PA [Anopheles gambiae str. PE	0.809	0.25	0.865	1e-53
157106452	476	preprotein translocase secy subunit (sec	0.809	0.25	0.865	1e-53
14861602	476	probable transport protein Sec61 alpha s	0.809	0.25	0.865	1e-53
324096506	423	LP19279p [Drosophila melanogaster]	0.809	0.281	0.865	1e-53
170045155	476	transport protein Sec61 subunit alpha 2	0.809	0.25	0.865	1e-53

>gi|187177323|ref|NP_001119639.1| Sec61 alpha 1 subunit [Acyrthosiphon pisum] gi|52630957|gb|AAU84942.1| probable transport protein Sec61 alpha subunit [Toxoptera citricida] gi|89574501|gb|ABD76381.1| putative transport protein Sec61 alpha subunit [Acyrthosiphon pisum]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/117 (90%), Positives = 109/117 (93%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGH 132
           LVSNLYVISQMLAVKFHGNI VNLLG WADVGGGGPARAYP+GGLCYYLSPPENL H
Sbjct: 297 LVSNLYVISQMLAVKFHGNILVNLLGVWADVGGGGPARAYPVGGLCYYLSPPENLSH 353

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761513|gb|JAA72915.1| Putative transport protein sec61 alpha subunit, partial [Ixodes ricinus]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 106/111 (95%)

Query: 24  MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
           +LAT+LVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI
Sbjct: 242 LLATILVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 301

Query: 84  SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           SQMLAVKF GN+FVNLLG WADVGG GPARAYPIGGLCYYLSPPENL H L
Sbjct: 302 SQMLAVKFSGNVFVNLLGVWADVGGAGPARAYPIGGLCYYLSPPENLAHIL 352

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241587669|ref|XP_002403755.1| protein transport protein SEC61 alpha subunit, putative [Ixodes scapularis] gi|215502244|gb|EEC11738.1| protein transport protein SEC61 alpha subunit, putative [Ixodes scapularis]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 106/111 (95%)

Query: 24  MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
           +LAT+LVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI
Sbjct: 192 LLATILVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 251

Query: 84  SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           SQMLAVKF GN+FVNLLG WADVGG GPARAYPIGGLCYYLSPPENL H L
Sbjct: 252 SQMLAVKFSGNVFVNLLGVWADVGGAGPARAYPIGGLCYYLSPPENLAHIL 302

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469489|gb|AEO34589.1| hypothetical protein [Amblyomma maculatum]

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 106/111 (95%)

Query: 24  MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
           +LATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI
Sbjct: 245 LLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 304

Query: 84  SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           SQMLAVKF GN+FVNLLG WADVGG GPARAYPIGGLCYYLSPPENL H L
Sbjct: 305 SQMLAVKFSGNVFVNLLGVWADVGGAGPARAYPIGGLCYYLSPPENLAHIL 355

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|13173171|gb|AAK14329.1|AF326338_1 putative transport protein Sec61 alpha subunit [Aedes aegypti]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKFHGN  +NLLG WADVGGGGPAR+YPIGGLCYYLSPPE+LGH +
Sbjct: 297 LVSNLYVISQMLAVKFHGNFLINLLGVWADVGGGGPARSYPIGGLCYYLSPPESLGHIV 355

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299950|ref|XP_319948.4| AGAP009182-PA [Anopheles gambiae str. PEST] gi|157013765|gb|EAA14690.5| AGAP009182-PA [Anopheles gambiae str. PEST]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKFHGN  +NLLG WADVGGGGPAR+YPIGGLCYYLSPPE+LGH +
Sbjct: 297 LVSNLYVISQMLAVKFHGNFLINLLGVWADVGGGGPARSYPIGGLCYYLSPPESLGHIV 355

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106452|ref|XP_001649329.1| preprotein translocase secy subunit (sec61) [Aedes aegypti] gi|108879849|gb|EAT44074.1| AAEL004523-PA [Aedes aegypti]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKFHGN  +NLLG WADVGGGGPAR+YPIGGLCYYLSPPE+LGH +
Sbjct: 297 LVSNLYVISQMLAVKFHGNFLINLLGVWADVGGGGPARSYPIGGLCYYLSPPESLGHIV 355

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|14861602|gb|AAK73749.1|AF392805_1 probable transport protein Sec61 alpha subunit [Aedes aegypti]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKFHGN  +NLLG WADVGGGGPAR+YPIGGLCYYLSPPE+LGH +
Sbjct: 297 LVSNLYVISQMLAVKFHGNFLINLLGVWADVGGGGPARSYPIGGLCYYLSPPESLGHIV 355

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324096506|gb|ADY17782.1| LP19279p [Drosophila melanogaster]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 184 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 243

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKF GN F+NLLG WADVGGGGPAR+YPIGGLCYYLSPPE++GH L
Sbjct: 244 LVSNLYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGHIL 302

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045155|ref|XP_001850184.1| transport protein Sec61 subunit alpha 2 [Culex quinquefasciatus] gi|167868165|gb|EDS31548.1| transport protein Sec61 subunit alpha 2 [Culex quinquefasciatus]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           LVSNLYVISQMLAVKFHGN  +NLLG WADVGGGGPAR+YPIGGLCYYLSPPE+LGH +
Sbjct: 297 LVSNLYVISQMLAVKFHGNFLINLLGVWADVGGGGPARSYPIGGLCYYLSPPESLGHIV 355

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0086357	476	Sec61alpha "Sec61alpha" [Droso	0.795	0.245	0.871	7.2e-52
UNIPROTKB|F1P4K3	482	SEC61A2 "Uncharacterized prote	0.789	0.240	0.818	6.7e-49
UNIPROTKB|Q2KHX4	476	SEC61A2 "Protein transport pro	0.789	0.243	0.818	6.7e-49
UNIPROTKB|F1PC79	476	SEC61A2 "Uncharacterized prote	0.789	0.243	0.818	6.7e-49
UNIPROTKB|F8W773	454	SEC61A2 "Protein transport pro	0.789	0.255	0.818	6.7e-49
UNIPROTKB|Q8TC24	418	SEC61A2 "Protein transport pro	0.789	0.277	0.818	6.7e-49
UNIPROTKB|Q9H9S3	476	SEC61A2 "Protein transport pro	0.789	0.243	0.818	6.7e-49
UNIPROTKB|F2Z5D0	476	SEC61A2 "Uncharacterized prote	0.789	0.243	0.818	6.7e-49
MGI|MGI:1931071	476	Sec61a2 "Sec61, alpha subunit	0.789	0.243	0.818	6.7e-49
ZFIN|ZDB-GENE-020418-2	476	sec61a1 "Sec61 alpha 1 subunit	0.789	0.243	0.775	3e-46

FB|FBgn0086357 Sec61alpha "Sec61alpha" [Drosophila melanogaster (taxid:7227)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 102/117 (87%), Positives = 109/117 (93%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + +LATVLVFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLLATVLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGH 132
             LVSNLYVISQMLAVKF GN F+NLLG WADVGGGGPAR+YPIGGLCYYLSPPE++GH
Sbjct:   297 LVSNLYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGH 353

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS;NAS

GO:0005784 "Sec61 translocon complex" evidence=ISS

GO:0008219 "cell death" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0008258 "head involution" evidence=IMP

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010507 "negative regulation of autophagy" evidence=IMP

GO:0045169 "fusome" evidence=IDA

UNIPROTKB|F1P4K3 SEC61A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   243 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 302

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   303 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 358

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1PC79 SEC61A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0043022 "ribosome binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F8W773 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   215 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 274

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   275 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 330

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8TC24 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

UNIPROTKB|F2Z5D0 SEC61A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0043022 "ribosome binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1931071 Sec61a2 "Sec61, alpha subunit 2 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 95/116 (81%), Positives = 106/116 (91%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+V+F GN  VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct:   297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-020418-2 sec61a1 "Sec61 alpha 1 subunit (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 90/116 (77%), Positives = 101/116 (87%)

Query:    16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
             QN    + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct:   237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296

Query:    76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
             LVSNLYVISQML+ +F GN  VNLLG W+D   GGPARAYP+GGLCYYLSPPE+ G
Sbjct:   297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFG 352

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0021986 "habenula development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78979	SC61A_YARLI	No assigned EC number	0.5405	0.7414	0.2314	yes	N/A
Q90YL4	S61A2_DANRE	No assigned EC number	0.7563	0.8095	0.25	yes	N/A
Q6FRY3	SC61A_CANGA	No assigned EC number	0.5132	0.7482	0.2296	yes	N/A
Q90ZM2	S61A1_DANRE	No assigned EC number	0.7647	0.8095	0.25	yes	N/A
P32915	SC61A_YEAST	No assigned EC number	0.5044	0.7482	0.2291	yes	N/A
Q2KHX4	S61A2_BOVIN	No assigned EC number	0.8189	0.7891	0.2436	yes	N/A
Q5NVM7	S61A2_PONAB	No assigned EC number	0.8067	0.8095	0.25	yes	N/A
Q9H9S3	S61A2_HUMAN	No assigned EC number	0.8189	0.7891	0.2436	yes	N/A
Q6BN08	SC61A_DEBHA	No assigned EC number	0.5625	0.7482	0.2296	yes	N/A
Q54XK2	SC61A_DICDI	No assigned EC number	0.5882	0.7959	0.2463	yes	N/A
Q6CPY9	SC61A_KLULA	No assigned EC number	0.5267	0.7619	0.2333	yes	N/A
Q9JLR1	S61A2_MOUSE	No assigned EC number	0.8189	0.7891	0.2436	yes	N/A
Q752H7	SC61A_ASHGO	No assigned EC number	0.5089	0.7619	0.2333	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
PTZ00219	474	PTZ00219, PTZ00219, Sec61 alpha subunit; Provision	7e-52
PRK08568	462	PRK08568, PRK08568, preprotein translocase subunit	8e-21
TIGR00967	410	TIGR00967, 3a0501s007, preprotein translocase, Sec	4e-19
pfam00344	340	pfam00344, SecY, SecY translocase	2e-18
COG0201	436	COG0201, SecY, Preprotein translocase subunit SecY	1e-13

>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional

 Score =  170 bits (433), Expect = 7e-52
 Identities = 70/111 (63%), Positives = 85/111 (76%), Gaps = 2/111 (1%)

Query: 24  MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
           +LATVLVF +VIYFQGFRVDLP+KS + RGQ  SYPIKLFYTSNIPIILQ+ALVSNLY  
Sbjct: 248 LLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFF 307

Query: 84  SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
           SQ+L  +F  N  +NLLG+W +V   G  ++ P+GGL YYLSPP +    +
Sbjct: 308 SQILYRRFKNNFLINLLGQWQEVEYSG--QSVPVGGLAYYLSPPNSFSDII 356

Length = 474

>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed

 Score = 86.8 bits (216), Expect = 8e-21
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 11/114 (9%)

Query: 25  LATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS 84
           + T+++F IV+Y +  RV++P+   R RG    YP+K  Y S +P+IL  AL +N+ +  
Sbjct: 238 ITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFG 297

Query: 85  QMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLL 138
           Q+L       + + +LG +   G        PI GL YYLSPP +   ++   L
Sbjct: 298 QLLQ-----RLGIPILGTYDSSGAS------PISGLAYYLSPPHSPYDWIQDPL 340

Length = 462

>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 25  LATVLVFAIVIYFQGFRVDLPIKSARYRG-----QYSSYPIKLFYTSNIPIILQSALVSN 79
           +AT++VFA+V++ Q  R  +PI+SA+ +G     Q +  P+KL Y   IP+I  SAL+SN
Sbjct: 206 IATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSN 265

Query: 80  LYVISQMLAVKFHGNIFVNLL 100
              ISQ L     G  F+N +
Sbjct: 266 PATISQFLNSNQGGAWFLNPI 286

Members of this protein family are the SecY component of the SecYEG translocon, or protein translocation pore, which is driven by the ATPase SecA. This model does not discriminate bacterial from archaeal forms [Protein fate, Protein and peptide secretion and trafficking]. Length = 410

>gnl|CDD|215869 pfam00344, SecY, SecY translocase

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 27/124 (21%)

Query: 21  AVMMLATVLVFAIVIYFQGFRVDLPIKSAR-----YRGQYSSYPIKLFYTSNIPIILQSA 75
            +++LAT+ V  +V+Y Q  R  +PI+ A+      RGQ S  PIKL Y   IPII  S+
Sbjct: 149 LLLLLATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPIKLNYAGVIPIIFASS 208

Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
           L++N   I+Q L   F                       +P+ GL YYL P  +  + L 
Sbjct: 209 LLANPQTIAQFLGSSFPL---------------------WPVSGLAYYL-PIGSPVYILF 246

Query: 136 LLLL 139
            ++L
Sbjct: 247 YIVL 250

Length = 340

>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion]

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 25  LATVLVFAIVIYFQGFRVDLPIKSAR---YRGQYSSYPIKLFYTSNIPIILQSALVSNLY 81
           L T+ +  +V+Y +  R  +PI+ A+   YRGQ S  P+KL Y   IP+I  S+L+    
Sbjct: 224 LLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPS 283

Query: 82  VISQML 87
            I+Q L
Sbjct: 284 TIAQFL 289

Length = 436

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG1373|consensus	476		100.0
PTZ00219	474	Sec61 alpha subunit; Provisional	99.89
PRK08568	462	preprotein translocase subunit SecY; Reviewed	99.79
COG0201	436	SecY Preprotein translocase subunit SecY [Intracel	99.5
TIGR00967	410	3a0501s007 preprotein translocase, SecY subunit.	99.37
PF00344	346	SecY: SecY translocase; InterPro: IPR002208 Secret	99.18
CHL00161	417	secY preprotein translocase subunit SecY; Validate	99.09
PRK12417	404	secY preprotein translocase subunit SecY; Reviewed	99.01
PRK09204	426	secY preprotein translocase subunit SecY; Reviewed	99.0
TIGR02920	395	acc_sec_Y2 accessory Sec system translocase SecY2.	98.91
PRK12907	434	secY preprotein translocase subunit SecY; Reviewed	98.25

>KOG1373|consensus

Probab=100.00  E-value=1.1e-44  Score=315.48  Aligned_cols=124  Identities=62%  Similarity=1.040  Sum_probs=116.8

Q ss_pred             hhHHHHhhcCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829           8 RSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus         8 ~~~~~~a~~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      ||+|..  |||||++++++|+++|++|+|+||||||+|+||+|+||++++||||||||||||||+|||+++|+|++||++
T Consensus       233 ~eAF~R--qnLPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll  310 (476)
T KOG1373|consen  233 REAFYR--QNLPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLL  310 (476)
T ss_pred             HHHHHH--hcccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHH
Confidence            566663  699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccceeeecccceeccCCCCCCCccccceeeeeeCCCCCHHHHHH
Q psy5829          88 AVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL  135 (147)
Q Consensus        88 ~~~~~~~~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l~  135 (147)
                      +++|++|++++++|+|++.++  ++++.|+||++||++||+|+.++++
T Consensus       311 ~~k~~~n~~v~llG~w~~~~~--~~~~~p~~glsyy~~pp~s~~~~~~  356 (476)
T KOG1373|consen  311 YKKFPGNFLVRLLGVWEDSEG--GGRSMPVSGLSYYITPPESFGEALQ  356 (476)
T ss_pred             HhhCCCceEEEEEeeeecCCC--CcccccccceeEecCChHHHHHHhh
Confidence            999999999999999998774  3688999999999999999998765

>PTZ00219 Sec61 alpha subunit; Provisional

Probab=99.89  E-value=1.1e-23  Score=187.93  Aligned_cols=116  Identities=59%  Similarity=1.026  Sum_probs=104.2

Q ss_pred             CCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhcccee
Q psy5829          17 NSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIF   96 (147)
Q Consensus        17 ~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~~   96 (147)
                      ++||++++++|++++++++|+|++|+|||+++.|.||.++.||||+.|+|+|||||+++++++++.++|++++.++++..
T Consensus       241 ~l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~  320 (474)
T PTZ00219        241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFL  320 (474)
T ss_pred             ccccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999888888887


Q ss_pred             eecccceeccCCCCCCCccccceeeeeeCCCCCHHHHH
Q psy5829          97 VNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL  134 (147)
Q Consensus        97 ~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l  134 (147)
                      ++++|+|.+.+.  ++++.|+||++||++||+++.+.+
T Consensus       321 ~~~l~~~~~~~~--~~~~~~v~gl~~~l~~p~~~~~~~  356 (474)
T PTZ00219        321 INLLGQWQEVEY--SGQSVPVGGLAYYLSPPNSFSDII  356 (474)
T ss_pred             cccccceecccc--ccccccchhHHhhcCCCcchhhhh
Confidence            889999964210  135679999999999999887555

>PRK08568 preprotein translocase subunit SecY; Reviewed

Probab=99.79  E-value=7.7e-20  Score=162.72  Aligned_cols=107  Identities=36%  Similarity=0.728  Sum_probs=94.5

Q ss_pred             cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccce
Q psy5829          16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNI   95 (147)
Q Consensus        16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~   95 (147)
                      +++||+..++++++++++++|+|++|++|||+++|+||.++.+|||+.|+|+|||||+++++++.++++|.++++.    
T Consensus       229 ~~l~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~----  304 (462)
T PRK08568        229 TRGLLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLG----  304 (462)
T ss_pred             ccccHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcC----
Confidence            4679999999999999999999999999999999999999999999999999999999999999999988875431    


Q ss_pred             eeecccceeccCCCCCCCccccceeeeeeCCCCCHHHH
Q psy5829          96 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHF  133 (147)
Q Consensus        96 ~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~  133 (147)
                       ++++|+|++.+      ..|++|++||++||+++.++
T Consensus       305 -~~~~~~~~~~~------~~~~~~l~~~~~~p~~~~~~  335 (462)
T PRK08568        305 -IPILGTYDSSG------ASPISGLAYYLSPPHSPYDW  335 (462)
T ss_pred             -chhhhhccccc------ccchhHHHHHhCCCcchhhh
Confidence             47899997532      23899999999999886543

>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]

Probab=99.50  E-value=3.7e-14  Score=126.10  Aligned_cols=69  Identities=36%  Similarity=0.619  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHHHHHHHhhhcceEEeeecccc---ccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHh
Q psy5829          20 MAVMMLATVLVFAIVIYFQGFRVDLPIKSAR---YRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA   88 (147)
Q Consensus        20 nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r---~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~   88 (147)
                      ++..+++|++++.+|+|+|.+|+||||.++|   .||+++.+|+|+.|+|+||+||+++++++...++|.+.
T Consensus       219 ~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~  290 (436)
T COG0201         219 LLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLG  290 (436)
T ss_pred             HHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhc
Confidence            4678899999999999999999999999999   99999999999999999999999999999988877554

>TIGR00967 3a0501s007 preprotein translocase, SecY subunit

Probab=99.37  E-value=6.1e-13  Score=116.87  Aligned_cols=74  Identities=42%  Similarity=0.663  Sum_probs=68.4

Q ss_pred             CCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccc-----cccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhh
Q psy5829          17 NSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRG-----QYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK   90 (147)
Q Consensus        17 ~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG-----~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~   90 (147)
                      .+|++..++++++++++++|+|+.|++||+++.|.|+     .++.+|||+.|+|+||+||+++++++++.++|.+.++
T Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~  276 (410)
T TIGR00967       198 NLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSN  276 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3678999999999999999999999999999998887     8899999999999999999999999999998887544

>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=99.18  E-value=4.6e-11  Score=102.43  Aligned_cols=71  Identities=41%  Similarity=0.647  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcceEEeeeccccc----cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhh
Q psy5829          21 AVMMLATVLVFAIVIYFQGFRVDLPIKSARY----RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKF   91 (147)
Q Consensus        21 L~~liaTi~vfl~ViYlq~~RVeIPI~s~r~----RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~   91 (147)
                      +..++++++++++++|+|+.+++||+.+.|.    ||.++.+|+|+.|+++||+||++++.++..++++.++..+
T Consensus       149 l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~  223 (346)
T PF00344_consen  149 LIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQF  223 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             HHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCC
Confidence            6799999999999999999999999999999    9999999999999999999999999999988888776543

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....

>CHL00161 secY preprotein translocase subunit SecY; Validated

Probab=99.09  E-value=1.9e-10  Score=101.48  Aligned_cols=66  Identities=27%  Similarity=0.418  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhhcceEEeeeccccccc-----cccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhhhh
Q psy5829          26 ATVLVFAIVIYFQGFRVDLPIKSARYRG-----QYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAVKF   91 (147)
Q Consensus        26 aTi~vfl~ViYlq~~RVeIPI~s~r~RG-----~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~~~   91 (147)
                      ++++++++++|+|..+.+||+.++|.||     .+..| |||+.|+|+||+||+++++++++.++|.+++++
T Consensus       209 ~~~~vi~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~  280 (417)
T CHL00161        209 LFFITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQF  280 (417)
T ss_pred             HHHHHHHHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccc
Confidence            7888889999999999999999988777     45566 999999999999999999999999999876554

>PRK12417 secY preprotein translocase subunit SecY; Reviewed

Probab=99.01  E-value=1.1e-09  Score=96.48  Aligned_cols=80  Identities=19%  Similarity=0.344  Sum_probs=67.0

Q ss_pred             hcCCccHHHHHHHHHHHHH--HHhhhcceEEeeec--cccccccccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhh
Q psy5829          15 LQNSKMAVMMLATVLVFAI--VIYFQGFRVDLPIK--SARYRGQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAV   89 (147)
Q Consensus        15 ~~~lPnL~~liaTi~vfl~--ViYlq~~RVeIPI~--s~r~RG~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~   89 (147)
                      ++..++...++++++++.+  ++|+|..+.+||++  +.+.|+.+++| |+|+.|+++||+||++++++..+.++|.++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~  262 (404)
T PRK12417        183 IDASHIVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILS  262 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445777778888777777  99999999999999  44445567889 9999999999999999999999999998876


Q ss_pred             hhccc
Q psy5829          90 KFHGN   94 (147)
Q Consensus        90 ~~~~~   94 (147)
                      .++++
T Consensus       263 ~~~~~  267 (404)
T PRK12417        263 IFPNN  267 (404)
T ss_pred             cCCCc
Confidence            66654

>PRK09204 secY preprotein translocase subunit SecY; Reviewed

Probab=99.00  E-value=7.3e-10  Score=98.08  Aligned_cols=63  Identities=29%  Similarity=0.502  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhhhcceEEeeeccccc---c---ccccce-eeeeeeecchhHHHHHHHHHHHHHHHHH
Q psy5829          24 MLATVLVFAIVIYFQGFRVDLPIKSARY---R---GQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQM   86 (147)
Q Consensus        24 liaTi~vfl~ViYlq~~RVeIPI~s~r~---R---G~~~~y-PIkLlYtSn~PIIl~sal~sni~~isql   86 (147)
                      ++++++++++++|+|+.+++||+.+.|.   |   |.+..| |+|+.|+|+|||||+++++++...++|.
T Consensus       220 ~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~  289 (426)
T PRK09204        220 IVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQF  289 (426)
T ss_pred             HHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999874   2   334455 9999999999999999999999888776

>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2

Probab=98.91  E-value=4e-09  Score=92.63  Aligned_cols=70  Identities=20%  Similarity=0.306  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhhcceEEeeecccc--ccccccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccc
Q psy5829          25 LATVLVFAIVIYFQGFRVDLPIKSAR--YRGQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGN   94 (147)
Q Consensus        25 iaTi~vfl~ViYlq~~RVeIPI~s~r--~RG~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~   94 (147)
                      +.+++++..++|+|..+.+||+.+.+  .|+.+++| |+|+.|+|+||+||+++++++.+.+++.++..++++
T Consensus       188 ~~~~~~i~~~v~~~~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~  260 (395)
T TIGR02920       188 LLTLVALFLLAFIERAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNS  260 (395)
T ss_pred             HHHHHHHHHHHheecceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            34455555678888777777766544  67778897 999999999999999999999988888887766554

Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.

>PRK12907 secY preprotein translocase subunit SecY; Reviewed

Probab=98.25  E-value=2.3e-06  Score=76.38  Aligned_cols=61  Identities=30%  Similarity=0.502  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhhhcceEEeeeccc-------cccc-cccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829          27 TVLVFAIVIYFQGFRVDLPIKSA-------RYRG-QYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus        27 Ti~vfl~ViYlq~~RVeIPI~s~-------r~RG-~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      .++++++++|+|..+.+||+.+.       +.+| .++..|+|+-|.++||+||++++++....+.+.+
T Consensus       224 ~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~  292 (434)
T PRK12907        224 ILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLF  292 (434)
T ss_pred             HHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHh
Confidence            33666789999999999999976       3345 4457899999999999999999999998887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2wwb_A	476	Cryo-Em Structure Of The Mammalian Sec61 Complex Bo		7e-49
2yxq_A	431	The Plug Domain Of The Secy Protein Stablizes The C		2e-11
3dkn_A	430	Sec61 In The Canine Ribosome-Channel Complex From T		2e-11
2yxr_A	426	The Plug Domain Of The Secy Protein Stablizes The C		2e-11
1rh5_A	436	The Structure Of A Protein Conducting Channel Lengt		2e-11
1rhz_A	436	The Structure Of A Protein Conducting Channel Lengt		2e-11
3mp7_A	482	Lateral Opening Of A Translocon Upon Entry Of Prote		4e-11
3bo0_A	442	Ribosome-Secy Complex Length = 442		2e-06
2ww9_A	490	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		2e-05

>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476

Iteration: 1
 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 102/116 (87%)
Query: 16  QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
           QN    + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76  LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
           LVSNLYVISQML+ +F GN+ V+LLG W+D   GGPARAYP+GGLC+YLSPPE+ G
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFG 352

>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
           KFL+SL     N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y 
Sbjct: 190 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 249
Query: 66  SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
           SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + G+ YYLS
Sbjct: 250 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 296
Query: 126 PPENL 130
            P  L
Sbjct: 297 TPYGL 301

>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
           KFL+SL     N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y 
Sbjct: 194 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 253
Query: 66  SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
           SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + G+ YYLS
Sbjct: 254 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 300
Query: 126 PPENL 130
            P  L
Sbjct: 301 TPYGL 305

>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
           KFL+SL     N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y 
Sbjct: 185 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 244
Query: 66  SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
           SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + G+ YYLS
Sbjct: 245 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 291
Query: 126 PPENL 130
            P  L
Sbjct: 292 TPYGL 296

>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
           KFL+SL     N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y 
Sbjct: 195 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 254
Query: 66  SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
           SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + G+ YYLS
Sbjct: 255 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 301
Query: 126 PPENL 130
            P  L
Sbjct: 302 TPYGL 306

>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
           KFL+SL     N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y 
Sbjct: 195 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 254
Query: 66  SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
           SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + G+ YYLS
Sbjct: 255 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 301
Query: 126 PPENL 130
            P  L
Sbjct: 302 TPYGL 306

>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 16/109 (14%)
Query: 24  MLATVLVFAIVIYFQGFRVDLPIKSARYRGQY--SSYPIKLFYTSNIPIILQSALVSNLY 81
           ++AT++VF IV+YF+  RV++P+    YRG     SYPI+  Y SNIPIIL  AL +N+ 
Sbjct: 244 VVATIVVFFIVVYFESMRVEIPLG---YRGVTVRGSYPIRFLYVSNIPIILTFALYANIQ 300
Query: 82  VISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130
           + +++L    H          W  +G   P    PI G   Y+ PP N+
Sbjct: 301 LWARVLDRLGH---------PW--LGRFDPTTGSPISGFVLYVIPPRNI 338

>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 24/132 (18%)
Query: 10  KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSAR-------YRGQYSSY 58
           KFL+SL     N +    ++ T++VF +V+Y +  R  + +  A+       Y  Q +  
Sbjct: 194 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRRRIVVNYAKRQQGRRVYAAQSTHL 253
Query: 59  PIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIG 118
           P+K+ Y SNIP+IL +AL +N+    Q+  +  +  + + +LG +     GG A    + 
Sbjct: 254 PLKVVYVSNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VD 300
Query: 119 GLCYYLSPPENL 130
           G+ YYLS P  L
Sbjct: 301 GIAYYLSTPYGL 312

>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 36  YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL----YVISQMLAVKF 91
           Y Q  RV+LPI+S R RG  + YPIKL YT  + ++    ++  +    +V+ Q++A   
Sbjct: 262 YLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE 321
Query: 92  HGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPEN 129
             +I   ++G + +         +P+      L+PP +
Sbjct: 322 PTHIICKIMGHYENANNLLAVPTFPLS----LLAPPTS 355

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1rh5_A	436	Preprotein translocase SECY subunit; protein trans	9e-32
2wwb_A	476	Protein transport protein SEC61 subunit alpha ISO;	1e-29
3mp7_A	482	Preprotein translocase subunit SECY; protein trans	2e-27
2ww9_A	490	SEC sixty-one protein homolog; ribonucleoprotein,	1e-20

>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436

 Score =  116 bits (292), Expect = 9e-32
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 11  FLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPI 70
            +  + N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y SNIP+
Sbjct: 200 LIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPV 259

Query: 71  ILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130
           IL +AL +N+ +    L       + + +LG +             + G+ YYLS P  L
Sbjct: 260 ILAAALFANIQLWGLAL-----YRMGIPILGHYEG--------GRAVDGIAYYLSTPYGL 306

Query: 131 GHFLLLLL 138
              +   +
Sbjct: 307 SSVISDPI 314

>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476

 Score =  110 bits (277), Expect = 1e-29
 Identities = 87/121 (71%), Positives = 103/121 (85%)

Query: 22  VMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 81
           + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVSNLY
Sbjct: 243 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 302

Query: 82  VISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLLRF 141
           VISQML+ +F GN+ V+LLG W+D   GGPARAYP+GGLC+YLSPPE+ G  L   +   
Sbjct: 303 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAV 362

Query: 142 V 142
           V
Sbjct: 363 V 363

>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482

 Score =  104 bits (262), Expect = 2e-27
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 12/114 (10%)

Query: 22  VMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 81
           + ++AT++VF IV+YF+  RV++P+          SYPI+  Y SNIPIIL  AL +N+ 
Sbjct: 242 LSVVATIVVFFIVVYFESMRVEIPLGYRG-VTVRGSYPIRFLYVSNIPIILTFALYANIQ 300

Query: 82  VISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
           + +++L       +    LG +       P    PI G   Y+ PP N+   + 
Sbjct: 301 LWARVL-----DRLGHPWLGRF------DPTTGSPISGFVLYVIPPRNIFSVID 343

>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490

 Score = 85.9 bits (212), Expect = 1e-20
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 22  VMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 81
              +  + +  IV Y Q  RV+LPI+S R RG  + YPIKL YT  + ++    ++  ++
Sbjct: 248 TTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIH 307

Query: 82  VISQMLAVKFHG----NIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLL 137
           + + +L          +I   ++G +          A P   L     P           
Sbjct: 308 IFAFVLIQLVAKNEPTHIICKIMGHYE---NANNLLAVPTFPLSLLAPPTSFFKGVTQQP 364

Query: 138 LLRFV 142
           L    
Sbjct: 365 LTFIT 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2wwb_A	476	Protein transport protein SEC61 subunit alpha ISO;	99.87
2ww9_A	490	SEC sixty-one protein homolog; ribonucleoprotein,	99.84
3mp7_A	482	Preprotein translocase subunit SECY; protein trans	99.81
1rh5_A	436	Preprotein translocase SECY subunit; protein trans	99.73
3dl8_G	429	Preprotein translocase subunit SECY; RECA-type ATP	99.35
3din_C	431	Preprotein translocase subunit SECY; protein trans	99.25
3j01_A	435	Preprotein translocase SECY subunit; ribonucleopro	99.22
2zjs_Y	434	Preprotein translocase SECY subunit; translocon, S	99.09

>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=99.87  E-value=9.5e-24  Score=187.10  Aligned_cols=115  Identities=75%  Similarity=1.290  Sum_probs=102.5

Q ss_pred             cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccce
Q psy5829          16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNI   95 (147)
Q Consensus        16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~   95 (147)
                      +++||+.++++|++++++|+|+|+.|+||||+++|+||+++.||||+.|+|+|||||+++++++.++++|+++++++++.
T Consensus       237 ~~l~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~  316 (476)
T 2wwb_A          237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNL  316 (476)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             cccchHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             eeecccceeccCCCCCCCccccceeeeeeCCCCCH
Q psy5829          96 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL  130 (147)
Q Consensus        96 ~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl  130 (147)
                      .++++|.|.+.+.+++++++|+||++||++||+++
T Consensus       317 ~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~  351 (476)
T 2wwb_A          317 LVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESF  351 (476)
T ss_dssp             CHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSS
T ss_pred             hhhhhhhhhhccccccccccccHHHHHHcCCcchh
Confidence            77899999654322345789999999999999764

>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A

Probab=99.84  E-value=3.5e-22  Score=177.64  Aligned_cols=111  Identities=23%  Similarity=0.411  Sum_probs=99.0

Q ss_pred             cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHH----HHhhhh
Q psy5829          16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ----MLAVKF   91 (147)
Q Consensus        16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isq----ll~~~~   91 (147)
                      +++|+++.+++|++++++|+|+|+.|+||||+++|.||+++.+|||+.|+|+|||||+++++++.++++|    ++++++
T Consensus       242 ~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~  321 (490)
T 2ww9_A          242 DYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE  321 (490)
T ss_dssp             SSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCC
T ss_pred             ccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            4678999999999999999999999999999999999999999999999999999999999999988888    777666


Q ss_pred             ccceeeecccceeccCCCCCCCccccceeeeeeCCCCCH
Q psy5829          92 HGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL  130 (147)
Q Consensus        92 ~~~~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl  130 (147)
                      +++..++++|.|.+.+    ++++|++|++||++||+|+
T Consensus       322 ~~~~~~~~lg~~~~~~----~~~~~~~~~~~~l~~p~~~  356 (490)
T 2ww9_A          322 PTHIICKIMGHYENAN----NLLAVPTFPLSLLAPPTSF  356 (490)
T ss_dssp             CCSSSCTTSBCCSCCS----SSSCSCSSBSCCSSCCCCS
T ss_pred             CCccccccccchhccc----cccchhHHHHHHhCCccch
Confidence            6666778889996432    4678999999999998875

>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0

Probab=99.81  E-value=2.1e-20  Score=165.94  Aligned_cols=106  Identities=34%  Similarity=0.603  Sum_probs=82.1

Q ss_pred             CCc--cHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccc
Q psy5829          17 NSK--MAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGN   94 (147)
Q Consensus        17 ~lP--nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~   94 (147)
                      ++|  |++.+++|++++++|+|+|+.|+||||+++|+| +++.+|||+.|+|+|||||+++++++.++++|+++++    
T Consensus       235 ~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~----  309 (482)
T 3mp7_A          235 GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL----  309 (482)
T ss_dssp             SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred             ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc----
Confidence            567  899999999999999999999999999999988 8999999999999999999999999999999988632    


Q ss_pred             eeeecccceeccCCCCCCCccccceeeeeeCCCCCHHHHH
Q psy5829          95 IFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL  134 (147)
Q Consensus        95 ~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l  134 (147)
                       ..+++|+|++.+      ..|++|++||++||.++.+++
T Consensus       310 -~~~~l~~~~~~~------~~~~~g~~~~l~p~~s~~~~~  342 (482)
T 3mp7_A          310 -GHPWLGRFDPTT------GSPISGFVLYVIPPRNIFSVI  342 (482)
T ss_dssp             -SCCSSBCCCCTT------SCCCCBSGGGSCCCSSSTHHH
T ss_pred             -cchhhhhhcccc------cccchhHHHHhCCcccHHHHh
Confidence             356889997532      248999999999998876554

>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A

Probab=99.73  E-value=3.5e-18  Score=150.10  Aligned_cols=97  Identities=36%  Similarity=0.742  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccceeeec
Q psy5829          20 MAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNL   99 (147)
Q Consensus        20 nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~~~~l   99 (147)
                      ++..++++++++++++|+|+.|+||||+++|+||+++.+|+|+.|+|+||+||+++++++...++|+++++  +   .++
T Consensus       209 ~l~~l~~~l~v~~~vV~~~~~~rrIPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~--~---~~~  283 (436)
T 1rh5_A          209 YIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM--G---IPI  283 (436)
T ss_dssp             GTHHHHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT--S---CCT
T ss_pred             HHHHHHHHHHHHHHHHhhcceEEEEEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc--C---cch
Confidence            47888999999999999999999999999999999999999999999999999999999999999977532  1   247


Q ss_pred             ccceeccCCCCCCCccccceeeeeeCCCCC
Q psy5829         100 LGEWADVGGGGPARAYPIGGLCYYLSPPEN  129 (147)
Q Consensus       100 LG~w~~~~~~~~~~~~pvgGL~YYlspP~s  129 (147)
                      +|+|+  +      .+|+||++||++||++
T Consensus       284 ~g~~~--~------~~~~~gl~yyl~pp~~  305 (436)
T 1rh5_A          284 LGHYE--G------GRAVDGIAYYLSTPYG  305 (436)
T ss_dssp             TCCBC--S------SSBSSSTTGGGCCCCS
T ss_pred             hhhcc--c------ccccccchhhcCChhH
Confidence            88894  1      3799999999999985

>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}

Probab=99.35  E-value=2.6e-13  Score=118.95  Aligned_cols=69  Identities=20%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             ccHHHHHHHHHHHHHHHhhhcceEEeeecccc-c------cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829          19 KMAVMMLATVLVFAIVIYFQGFRVDLPIKSAR-Y------RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus        19 PnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r-~------RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      +++..++++++++++|+|+|+.|+||||+++| +      ||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus       217 ~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~  292 (429)
T 3dl8_G          217 TLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFV  292 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHc
Confidence            56889999999999999999999999999875 3      789999999999999999999999999998887744

>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}

Probab=99.25  E-value=1.7e-12  Score=113.84  Aligned_cols=69  Identities=28%  Similarity=0.364  Sum_probs=64.0

Q ss_pred             ccHHHHHHHHHHHHHHHhhhcceEEeeecccc-------ccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829          19 KMAVMMLATVLVFAIVIYFQGFRVDLPIKSAR-------YRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus        19 PnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r-------~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      +++..++++++++++|+|+|+.|++|||+++|       .||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus       215 ~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~  290 (431)
T 3din_C          215 EWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASIT  290 (431)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHc
Confidence            67889999999999999999999999999877       6899999999999999999999999999998887654

>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y

Probab=99.22  E-value=2.8e-12  Score=112.63  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcceEEeeecccc-c------cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829          21 AVMMLATVLVFAIVIYFQGFRVDLPIKSAR-Y------RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus        21 L~~liaTi~vfl~ViYlq~~RVeIPI~s~r-~------RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      +..++++++++++++|+|+.|+||||+++| +      ||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus       214 l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~  287 (435)
T 3j01_A          214 LLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWF  287 (435)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHc
Confidence            566788889999999999999999999865 3      689999999999999999999999999998887753

>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y

Probab=99.09  E-value=7.6e-11  Score=103.55  Aligned_cols=65  Identities=29%  Similarity=0.368  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhhhcceEEeeeccccc---c----ccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829          23 MMLATVLVFAIVIYFQGFRVDLPIKSARY---R----GQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML   87 (147)
Q Consensus        23 ~liaTi~vfl~ViYlq~~RVeIPI~s~r~---R----G~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll   87 (147)
                      -++++++++++++|+|+.+.+|||.+.|.   |    |+++.+|+|+.|+|+||+||+++++++...++|++
T Consensus       220 ~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~  291 (434)
T 2zjs_Y          220 FLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPF  291 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHh
Confidence            34889999999999999999999999874   3    88899999999999999999999999998887744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1rh5a_	422	f.41.1.1 (A:) Preprotein translocase SecY subunit	9e-14

>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 9   SKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNI 68
           +  +  + N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y SNI
Sbjct: 197 NSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 256

Query: 69  PIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPE 128
           P+IL +AL +N+ +    L       + + +LG +             + G+ YYLS P 
Sbjct: 257 PVILAAALFANIQLWGLAL-----YRMGIPILGHYEG--------GRAVDGIAYYLSTPY 303

Query: 129 NLGH 132
            L  
Sbjct: 304 GLSS 307

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1rh5a_	422	Preprotein translocase SecY subunit {Archaeon Meth	99.7

>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=8.2e-18  Score=144.42  Aligned_cols=103  Identities=34%  Similarity=0.652  Sum_probs=91.8

Q ss_pred             cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccce
Q psy5829          16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNI   95 (147)
Q Consensus        16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~   95 (147)
                      .+++++..++++++++++++|+|+.|++||+++.|.||.++.||||+.|+|+||+||+++++++...++|.+++.     
T Consensus       204 ~~~~~~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~-----  278 (422)
T d1rh5a_         204 PNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM-----  278 (422)
T ss_dssp             CCGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhc-----
Confidence            356778999999999999999999999999999999999999999999999999999999999999999988753     


Q ss_pred             eeecccceeccCCCCCCCccccceeeeeeCCCCCHH
Q psy5829          96 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG  131 (147)
Q Consensus        96 ~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~  131 (147)
                      ...++|+|+..        .+++|++||++||.++.
T Consensus       279 ~~~~l~~~~~~--------~~~~~i~~~~~~~~~~~  306 (422)
T d1rh5a_         279 GIPILGHYEGG--------RAVDGIAYYLSTPYGLS  306 (422)
T ss_dssp             SCCTTCCBCSS--------SBSSSTTGGGCCCCSSS
T ss_pred             ccccccccCCC--------chHHHHHHHhCCcchhh
Confidence            34578888542        47999999999998753