Psyllid ID: psy5836

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MSTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK
Secondary Structure (PSIPRED)
ccccccccccccEEccccccccccccccccccccccccccccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHccccccccccccccccEEEccccccHccccccccccc
Coil and Loop (DISEMBL)
mstcvsrcpprsfpnqggvcwpchescetcagagqdscltcapahlRVTDLAIClqqcpegyfesk
Flexible Loop (DISEMBL)
mstcvsrcpprsfpnqggVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK
Low Complexity Region (SEG)
MSTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK
Disordered region (IsUnstruct)
***************QGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY****
Disordered Region (DISOPRED)
MSTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE**
Disordered Region (DISEMBL)
***********SFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK
Disordered Region (DISPRO)
*STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
P30432	1679	Furin-like protease 2 OS=	yes	N/A	0.939	0.036	0.812	8e-27
Q86XX4	4007	Extracellular matrix prot	no	N/A	0.924	0.015	0.365	1e-05
P41413	1809	Proprotein convertase sub	yes	N/A	0.893	0.032	0.370	2e-05
Q9NJ15	1696	Proprotein convertase sub	N/A	N/A	0.909	0.035	0.387	2e-05
Q04592	1877	Proprotein convertase sub	yes	N/A	0.893	0.031	0.338	0.0002
Q92824	1860	Proprotein convertase sub	no	N/A	0.893	0.031	0.306	0.0009

>sp|P30432|FUR2_DROME Furin-like protease 2 OS=Drosophila melanogaster GN=Fur2 PE=2 SV=2

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 59/64 (92%)

Query: 2    STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
            +TCVSRCPPRSFPNQ G+CWPCH++CETCAGAG DSCLTCAPAHL V DLA+CLQ CP+G
Sbjct: 994  NTCVSRCPPRSFPNQVGICWPCHDTCETCAGAGPDSCLTCAPAHLHVIDLAVCLQFCPDG 1053

Query: 62   YFES 65
            YFE+
Sbjct: 1054 YFEN 1057

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 7EC: 5

>sp|Q86XX4|FRAS1_HUMAN Extracellular matrix protein FRAS1 OS=Homo sapiens GN=FRAS1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 4   CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           C+++C    +    G+C  CH+SC  CAG    +C  C P+H+ +     CL QCP+GYF
Sbjct: 695 CLAQCRAHFYLESTGLCEACHQSCFRCAGKSPHNCTDCGPSHVLLD--GQCLSQCPDGYF 752

Query: 64  ESK 66
             +
Sbjct: 753 HQE 755

Homo sapiens (taxid: 9606)

>sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5 OS=Rattus norvegicus GN=Pcsk5 PE=2 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 4   CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           CVS CPP  F      C  C  +CE+C G+  D CL+C   +    + + C+ QCPEG +
Sbjct: 672 CVSSCPPGHFHADKKRCRKCAPNCESCFGSHADQCLSCKYGYFLNEETSSCVAQCPEGSY 731

Query: 64  ES 65
           + 
Sbjct: 732 QD 733

Plays an essential role in pregnancy establishment by proteolytic activation of a number of important factors such as BMP2 and CALD1. Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif. May be responsible for the maturation of gastrointestinal peptides. May be involved in the cellular proliferation of adrenal cortex via the activation of growth factors.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9NJ15|PCSK5_BRACL Proprotein convertase subtilisin/kexin type 5 OS=Branchiostoma californiense GN=PC6 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 4    CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
            CV+ C    +P+    C  C   CETC G   D C+TC   +  V  L  CL+ CPEGY+
Sbjct: 1422 CVTECQEGHYPDLTNECQQCWSDCETCDGPRNDQCVTCPYNYYLV--LGKCLEDCPEGYY 1479

Query: 64   ES 65
            ++
Sbjct: 1480 DT 1481

Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif.

Branchiostoma californiense (taxid: 7738)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5 OS=Mus musculus GN=Pcsk5 PE=1 SV=3

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 4   CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           CVS CPP  +      C  C  +CE+C G+  + CL+C   +    + + C+ QCP+G +
Sbjct: 672 CVSSCPPGHYHADKKRCRKCAPNCESCFGSHGNQCLSCKYGYFLNEETSSCVTQCPDGSY 731

Query: 64  ES 65
           E 
Sbjct: 732 ED 733

Plays an essential role in pregnancy establishment by proteolytic activation of a number of important factors such as BMP2 and CALD1. Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif. May be responsible for the maturation of gastrointestinal peptides. May be involved in the cellular proliferation of adrenal cortex via the activation of growth factors.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q92824|PCSK5_HUMAN Proprotein convertase subtilisin/kexin type 5 OS=Homo sapiens GN=PCSK5 PE=1 SV=4

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 4   CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           CVS CPP  +      C  C  +CE+C G+  D C++C   +    +   C+  CP+G +
Sbjct: 670 CVSSCPPGHYHADKKRCRKCAPNCESCFGSHGDQCMSCKYGYFLNEETNSCVTHCPDGSY 729

Query: 64  ES 65
           + 
Sbjct: 730 QD 731

Likely to represent a widespread endoprotease activity within the constitutive and regulated secretory pathway. Capable of cleavage at the RX(K/R)R consensus motif. Plays an essential role in pregnancy establishment by proteolytic activation of a number of important factors such as BMP2 and CALD1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
345493157	1282	PREDICTED: furin-like protease 2-like, p	0.939	0.048	0.921	4e-29
328711436	1335	PREDICTED: furin-like protease 2-like [A	0.939	0.046	0.921	6e-29
350404680	1307	PREDICTED: furin-like protease 2-like [B	0.939	0.047	0.906	1e-28
340720987	1307	PREDICTED: furin-like protease 2-like [B	0.939	0.047	0.906	1e-28
307204814	1371	Furin-like protease 2 [Harpegnathos salt	0.939	0.045	0.906	1e-28
383854126	1297	PREDICTED: furin-like protease 2-like [M	0.939	0.047	0.906	1e-28
332021391	1295	Furin-like protease 2 [Acromyrmex echina	0.939	0.047	0.906	1e-28
312375590	839	hypothetical protein AND_13972 [Anophele	0.954	0.075	0.892	2e-28
322800407	1157	hypothetical protein SINV_07873 [Solenop	0.939	0.053	0.906	2e-28
307170063	1152	Furin-like protease 2 [Camponotus florid	0.939	0.053	0.906	2e-28

>gi|345493157|ref|XP_001601381.2| PREDICTED: furin-like protease 2-like, partial [Nasonia vitripennis]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 64/64 (100%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 709 NTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 768

Query: 62  YFES 65
           Y+E+
Sbjct: 769 YYEN 772

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711436|ref|XP_001943296.2| PREDICTED: furin-like protease 2-like [Acyrthosiphon pisum]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 64/64 (100%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPN+GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLA+CLQQCP+G
Sbjct: 773 NTCVSRCPPRSFPNKGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAVCLQQCPDG 832

Query: 62  YFES 65
           YFE+
Sbjct: 833 YFEN 836

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404680|ref|XP_003487184.1| PREDICTED: furin-like protease 2-like [Bombus impatiens]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 737 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 796

Query: 62  YFES 65
           Y+E+
Sbjct: 797 YYEN 800

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720987|ref|XP_003398909.1| PREDICTED: furin-like protease 2-like [Bombus terrestris]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 737 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 796

Query: 62  YFES 65
           Y+E+
Sbjct: 797 YYEN 800

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204814|gb|EFN83372.1| Furin-like protease 2 [Harpegnathos saltator]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 803 NTCVSRCPPRSFPNQGGVCWPCHESCEVCAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 862

Query: 62  YFES 65
           Y+E+
Sbjct: 863 YYEN 866

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854126|ref|XP_003702573.1| PREDICTED: furin-like protease 2-like [Megachile rotundata]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 727 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 786

Query: 62  YFES 65
           Y+E+
Sbjct: 787 YYEN 790

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021391|gb|EGI61759.1| Furin-like protease 2 [Acromyrmex echinatior]

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 727 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 786

Query: 62  YFES 65
           Y+E+
Sbjct: 787 YYEN 790

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375590|gb|EFR22931.1| hypothetical protein AND_13972 [Anopheles darlingi]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 63/65 (96%)

Query: 1   MSTCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPE 60
           ++TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHL VTDLA+CLQ CPE
Sbjct: 616 IATCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLYVTDLAVCLQVCPE 675

Query: 61  GYFES 65
           GY+E+
Sbjct: 676 GYYEN 680

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800407|gb|EFZ21411.1| hypothetical protein SINV_07873 [Solenopsis invicta]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 589 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 648

Query: 62  YFES 65
           Y+E+
Sbjct: 649 YYEN 652

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170063|gb|EFN62505.1| Furin-like protease 2 [Camponotus floridanus]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TCVSRCPPRSFPNQGGVCWPCHESCE CAGAGQDSCL+CAPAHLRVTDLA+CLQQCPEG
Sbjct: 583 NTCVSRCPPRSFPNQGGVCWPCHESCEICAGAGQDSCLSCAPAHLRVTDLAVCLQQCPEG 642

Query: 62  YFES 65
           Y+E+
Sbjct: 643 YYEN 646

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0004598	1679	Fur2 "Furin 2" [Drosophila mel	0.969	0.038	0.812	7.8e-28
UNIPROTKB|F1N740	4001	FRAS1 "Uncharacterized protein	0.924	0.015	0.412	1.1e-08
UNIPROTKB|E9PHH6	4012	FRAS1 "Extracellular matrix pr	0.924	0.015	0.380	2.2e-08
UNIPROTKB|F1NU61	1660	Gga.51500 "Uncharacterized pro	0.909	0.036	0.412	2.3e-08
UNIPROTKB|F1NDM0	1696	Gga.51500 "Uncharacterized pro	0.909	0.035	0.412	2.3e-08
UNIPROTKB|Q86XX4	4007	FRAS1 "Extracellular matrix pr	0.924	0.015	0.380	3.6e-08
UNIPROTKB|F1RYS0	3985	FRAS1 "Uncharacterized protein	0.924	0.015	0.396	4.6e-08
UNIPROTKB|Q22XV6	8517	TTHERM_00357150 "Putative unch	0.939	0.007	0.391	1.3e-07
RGD|620326	1809	Pcsk5 "proprotein convertase s	0.924	0.033	0.377	2.3e-07
UNIPROTKB|P41413	1809	Pcsk5 "Proprotein convertase s	0.924	0.033	0.377	2.3e-07

FB|FBgn0004598 Fur2 "Furin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 7.8e-28, P = 7.8e-28
 Identities = 52/64 (81%), Positives = 59/64 (92%)

Query:     2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
             +TCVSRCPPRSFPNQ G+CWPCH++CETCAGAG DSCLTCAPAHL V DLA+CLQ CP+G
Sbjct:   994 NTCVSRCPPRSFPNQVGICWPCHDTCETCAGAGPDSCLTCAPAHLHVIDLAVCLQFCPDG 1053

Query:    62 YFES 65
             YFE+
Sbjct:  1054 YFEN 1057

GO:0004252 "serine-type endopeptidase activity" evidence=IGI;NAS;IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004714 "transmembrane receptor protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016485 "protein processing" evidence=IBA

UNIPROTKB|F1N740 FRAS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             C+SRC  + +    G+C  CH SC  CAG    +C  C P+H+ + D   CL QCP+GYF
Sbjct:   674 CLSRCRAQFYLEITGLCEACHPSCSACAGMSPHNCTACWPSHM-LLD-GECLSQCPDGYF 731

Query:    64 ESK 66
               +
Sbjct:   732 NQE 734

GO:0043588 "skin development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|E9PHH6 FRAS1 "Extracellular matrix protein FRAS1" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             C+++C    +    G+C  CH+SC  CAG    +C  C P+H+ + D   CL QCP+GYF
Sbjct:   695 CLAQCRAHFYLESTGICEACHQSCFRCAGKSPHNCTDCGPSHV-LLD-GQCLSQCPDGYF 752

Query:    64 ESK 66
               +
Sbjct:   753 HQE 755

GO:0007154 "cell communication" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0043588 "skin development" evidence=IEA

UNIPROTKB|F1NU61 Gga.51500 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:     2 STCVSRCPPRSFPNQG-GVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPE 60
             +TCV +CP   + +   G C PCH +C TC+G     CL+C P   R      C+ QCP 
Sbjct:  1436 TTCVEKCPAGYYADSDEGRCSPCHTTCATCSGKHSSQCLSCKPGLYRQGKG--CVSQCPT 1493

Query:    61 GYF 63
             GYF
Sbjct:  1494 GYF 1496

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NDM0 Gga.51500 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:     2 STCVSRCPPRSFPNQG-GVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPE 60
             +TCV +CP   + +   G C PCH +C TC+G     CL+C P   R      C+ QCP 
Sbjct:  1464 TTCVEKCPAGYYADSDEGRCSPCHTTCATCSGKHSSQCLSCKPGLYRQGKG--CVSQCPT 1521

Query:    61 GYF 63
             GYF
Sbjct:  1522 GYF 1524

GO:0006508 "proteolysis" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0002001 "renin secretion into blood stream" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0016486 "peptide hormone processing" evidence=IEA

GO:0019067 "viral assembly, maturation, egress, and release" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030323 "respiratory tube development" evidence=IEA

GO:0035108 "limb morphogenesis" evidence=IEA

GO:0042089 "cytokine biosynthetic process" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0048566 "embryonic digestive tract development" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

UNIPROTKB|Q86XX4 FRAS1 "Extracellular matrix protein FRAS1" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             C+++C    +    G+C  CH+SC  CAG    +C  C P+H+ + D   CL QCP+GYF
Sbjct:   695 CLAQCRAHFYLESTGLCEACHQSCFRCAGKSPHNCTDCGPSHV-LLD-GQCLSQCPDGYF 752

Query:    64 ESK 66
               +
Sbjct:   753 HQE 755

GO:0007154 "cell communication" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISS

UNIPROTKB|F1RYS0 FRAS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             C+ RC  + +    G+C  CH SC  CAG    +C  C P+H+ + D   CL QCP+GYF
Sbjct:   662 CLLRCRAQLYLESTGLCEACHPSCLGCAGKSPQNCTACLPSHV-LLD-GQCLSQCPDGYF 719

Query:    64 ESK 66
               +
Sbjct:   720 SQE 722

GO:0031012 "extracellular matrix" evidence=IDA

GO:0043588 "skin development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|Q22XV6 TTHERM_00357150 "Putative uncharacterized protein" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 143 (55.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:     1 MSTCVSRCPPR-SFP----NQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICL 55
             +STCV  CPP  S P    N   +C PC   C+TC    +  C +C   +L + D  +C+
Sbjct:  1657 VSTCVDSCPPDISIPSLDSNNNNICSPCPIPCQTCDLKSR--CTSCISGYLFIADQQLCV 1714

Query:    56 QQCPEGYFE 64
              QCP+GYF+
Sbjct:  1715 TQCPDGYFQ 1723

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

RGD|620326 Pcsk5 "proprotein convertase subtilisin/kexin type 5" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             CVS CPP  F      C  C  +CE+C G+  D CL+C   +    + + C+ QCPEG +
Sbjct:   672 CVSSCPPGHFHADKKRCRKCAPNCESCFGSHADQCLSCKYGYFLNEETSSCVAQCPEGSY 731

Query:    64 E 64
             +
Sbjct:   732 Q 732

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0002001 "renin secretion into blood stream" evidence=IEA;ISO

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISO;IBA

GO:0005615 "extracellular space" evidence=ISO;IBA

GO:0005794 "Golgi apparatus" evidence=ISO;IBA

GO:0006465 "signal peptide processing" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0007507 "heart development" evidence=IEA;ISO

GO:0007566 "embryo implantation" evidence=IEA;ISO

GO:0009952 "anterior/posterior pattern specification" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=ISO

GO:0016486 "peptide hormone processing" evidence=IEA;ISO

GO:0019067 "viral assembly, maturation, egress, and release" evidence=IEA;ISO

GO:0030141 "secretory granule" evidence=IEA;ISO

GO:0030323 "respiratory tube development" evidence=IEA;ISO

GO:0035108 "limb morphogenesis" evidence=IEA;ISO

GO:0042089 "cytokine biosynthetic process" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IEA;ISO

GO:0043043 "peptide biosynthetic process" evidence=IEA;ISO

GO:0048566 "embryonic digestive tract development" evidence=IEA;ISO

GO:0048706 "embryonic skeletal system development" evidence=IEA;ISO

UNIPROTKB|P41413 Pcsk5 "Proprotein convertase subtilisin/kexin type 5" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query:     4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
             CVS CPP  F      C  C  +CE+C G+  D CL+C   +    + + C+ QCPEG +
Sbjct:   672 CVSSCPPGHFHADKKRCRKCAPNCESCFGSHADQCLSCKYGYFLNEETSSCVAQCPEGSY 731

Query:    64 E 64
             +
Sbjct:   732 Q 732

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P30432	FUR2_DROME	3, ., 4, ., 2, 1, ., 7, 5	0.8125	0.9393	0.0369	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
smart00261	45	smart00261, FU, Furin-like repeats	4e-06
cd00064	49	cd00064, FU, Furin-like repeats	4e-05

>gnl|CDD|214589 smart00261, FU, Furin-like repeats

 Score = 39.0 bits (91), Expect = 4e-06
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 17 GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           G C PCH  C TC G G D C +C            C+ +CP G +
Sbjct: 1  DGECKPCHPECATCTGPGPDDCTSCKHGFFLDGG--KCVSECPPGTY 45

Length = 45

>gnl|CDD|238021 cd00064, FU, Furin-like repeats

 Score = 36.3 bits (84), Expect = 4e-05
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 22 PCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65
          PCH SC TC G G D C +C   H    D   C+ +CPEG +  
Sbjct: 1  PCHPSCATCTGPGPDQCTSC--RHGFYLDGGTCVSECPEGTYAD 42

Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors. Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PF14843	132	GF_recep_IV: Growth factor receptor domain IV; PDB	99.51
smart00261	46	FU Furin-like repeats.	99.36
cd00064	49	FU Furin-like repeats. Cysteine rich region. Exact	99.29
KOG1025|consensus	1177		98.75
PTZ00214	800	high cysteine membrane protein Group 4; Provisiona	98.74
PF03302	397	VSP: Giardia variant-specific surface protein; Int	98.72
PTZ00214	800	high cysteine membrane protein Group 4; Provisiona	98.58
PF14843	132	GF_recep_IV: Growth factor receptor domain IV; PDB	98.57
PF00757	149	Furin-like: Furin-like cysteine rich region; Inter	98.45
KOG4260|consensus	350		97.47
PF00757	149	Furin-like: Furin-like cysteine rich region; Inter	97.36
KOG4258|consensus	1025		97.07
KOG1025|consensus	1177		97.05
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	96.47
PF13948	47	DUF4215: Domain of unknown function (DUF4215)	95.72
PF07562	54	NCD3G: Nine Cysteines Domain of family 3 GPCR; Int	95.08
PF03302	397	VSP: Giardia variant-specific surface protein; Int	94.48
cd00185	98	TNFR Tumor necrosis factor receptor (TNFR) domain;	93.58
KOG4258|consensus	1025		93.41
PF07699	48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	90.73
PHA02637	127	TNF-alpha-receptor-like protein; Provisional	88.2
cd00185	98	TNFR Tumor necrosis factor receptor (TNFR) domain;	87.96
PHA02637	127	TNF-alpha-receptor-like protein; Provisional	84.11
PF00020	39	TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro:	84.09
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	82.62
smart00208	39	TNFR Tumor necrosis factor receptor / nerve growth	80.29

>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A

Probab=99.51  E-value=1.1e-14  Score=85.32  Aligned_cols=58  Identities=47%  Similarity=1.171  Sum_probs=45.3

Q ss_pred             CcccccCCCCe-----eeCCccccccCcccc------ccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           2 STCVSRCPPRS-----FPNQGGVCWPCHESC------ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         2 ~~Cv~~C~~g~-----y~~~~~~C~~C~~~C------~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      ++||.+||.++     |.+ .++|++||++|      .+|+||++++|++|+.  ++  +.++||..||.|+|.
T Consensus        29 g~Cv~~C~~~~~~~~~~~~-~~~C~~Ch~~C~~~~~~~~C~Gp~~~~C~~C~~--~~--~~~~Cv~~CP~~~~~   97 (132)
T PF14843_consen   29 GTCVASCPDGYYFDGSYED-SNTCQPCHPECLPSNGSETCTGPGADQCLSCAH--FR--DGGQCVSSCPEGTYG   97 (132)
T ss_dssp             TEEESSTSSSSSSSSEEEE-TTEEEE--TTB---TTSSSBSSSSTTTBSSBSS--EE--ETTEEESS--EEEEB
T ss_pred             Ccchhhccccccccccccc-CCcCcccChhhCccccCcCcCCCCcchhhhccc--cC--CCCcccCcCCCCCcc
Confidence            68999999763     333 79999999999      9999999999999994  44  479999999999643

...

>smart00261 FU Furin-like repeats

Probab=99.36  E-value=5.2e-13  Score=65.25  Aligned_cols=45  Identities=38%  Similarity=1.037  Sum_probs=40.9

Q ss_pred             cccccCccccccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836          18 GVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus        18 ~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      +.|.+||++|.+|.|+++++|++|..++++.  .++||..||+++|.
T Consensus         2 ~~C~~C~~~C~~C~~~~~~~C~~C~~~~~l~--~~~Cv~~C~~~~~~   46 (46)
T smart00261        2 GECKPCHPECATCTGPGPDDCTSCKHGFFLD--GGTCVSECPPGTYA   46 (46)
T ss_pred             CccccccccccccCCcCcCcCccCCcccCCC--CCCccCcCCCCccC
Confidence            5799999999999999999999999988775  48999999999884

>cd00064 FU Furin-like repeats

Probab=99.29  E-value=1.9e-12  Score=64.08  Aligned_cols=42  Identities=40%  Similarity=1.043  Sum_probs=38.0

Q ss_pred             cCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836          22 PCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus        22 ~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      +||++|.+|+|+++++|++|..++++.  .++||..||+++|.+
T Consensus         1 ~C~~~C~~C~g~~~~~C~~C~~~~~~~--~~~Cv~~C~~~~~~~   42 (49)
T cd00064           1 PCHPSCATCTGPGPDQCTSCRHGFYLD--GGTCVSECPEGTYAD   42 (49)
T ss_pred             CCCCccCCCcCcCcCcCccCcCccCCC--CCcccccCCCCceec
Confidence            589999999999999999999998854  699999999999874

Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.

>KOG1025|consensus

Probab=98.75  E-value=5.2e-09  Score=75.91  Aligned_cols=59  Identities=42%  Similarity=0.959  Sum_probs=48.4

Q ss_pred             CcccccCCC--Ceee-CCccccccCccccccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           2 STCVSRCPP--RSFP-NQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         2 ~~Cv~~C~~--g~y~-~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      ++||+.|..  |-+. ..+..|..||+.|+||+|+++++|+.|.  .|.  +...||..||+|--+
T Consensus       516 g~CVe~C~~l~g~~rf~~~~~C~~ChPEC~TCnG~G~d~C~~Ca--Hf~--dgp~CV~~CP~G~~G  577 (1177)
T KOG1025|consen  516 GTCVEKCNLLGGEPRFVNSRECERCHPECETCNGPGADNCLQCA--HFR--DGPHCVSDCPDGVTG  577 (1177)
T ss_pred             ceehhhccccCCcccccccceecccChhhccCCCCCccchhhhh--hcC--CCcchhccCCCcccC
Confidence            579999973  3333 3468999999999999999999999998  443  578999999998644

>PTZ00214 high cysteine membrane protein Group 4; Provisional

Probab=98.74  E-value=8.5e-09  Score=74.30  Aligned_cols=62  Identities=21%  Similarity=0.588  Sum_probs=52.3

Q ss_pred             cccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCcccccc----cccccc--ccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTD----LAICLQ--QCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~----~~~Cv~--~Cp~g~y~~   65 (66)
                      +|. +|..|||.+....|++|+++|.+|.++++.+|++|..+++|...    .+.||.  .|++|||.+
T Consensus       560 ~Ct-~C~~GYyl~~~~~C~~Cd~~C~~C~~~~~~~C~sC~~g~yL~~~~~~~~g~Cv~~~~C~~GYY~d  627 (800)
T PTZ00214        560 KCT-TTKKGYGISPDGKLLECDPTCLACTAPGPGRCTRCPSDKLLKRASGAATGSCVDPGACVDGYYAD  627 (800)
T ss_pred             ccc-ccccCcccCCCCccccccchhhhccCCCCCcceECCCCCEeccccccccccccCcccCCCCcccC
Confidence            454 57789998778889999999999999999999999999988532    357884  899999986

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=98.72  E-value=1.4e-08  Score=68.36  Aligned_cols=58  Identities=38%  Similarity=0.966  Sum_probs=48.2

Q ss_pred             ccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCcccccc----ccccccccccCc
Q psy5836           4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTD----LAICLQQCPEGY   62 (66)
Q Consensus         4 Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~----~~~Cv~~Cp~g~   62 (66)
                      +...||+|||.+ ++.|.+||++|.+|.++.+++|++|.++++|...    .++|+..|-++.
T Consensus        92 ~c~~C~~G~y~~-~~~C~~C~~~C~~C~~~~~~~Ct~C~~g~~L~~~~~~~~~tC~~~c~~~~  153 (397)
T PF03302_consen   92 CCSECPDGYYKN-GNKCVPCHESCATCSGGAPNQCTSCKPGKVLKYGTDGTKGTCGAECTEDC  153 (397)
T ss_pred             cccCCCCCcccc-CCCCCCCCccccccCCCCCCCCcccCCCcccccccCCCcCcccccccccc
Confidence            456899999985 6799999999999999999999999999987641    367887775543

>PTZ00214 high cysteine membrane protein Group 4; Provisional

Probab=98.58  E-value=5.3e-08  Score=70.28  Aligned_cols=57  Identities=32%  Similarity=0.870  Sum_probs=48.2

Q ss_pred             ccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccc-----cccccccccccC
Q psy5836           4 CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVT-----DLAICLQQCPEG   61 (66)
Q Consensus         4 Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~-----~~~~Cv~~Cp~g   61 (66)
                      |+..|++|||. ..+.|.+||++|.+|.++++..|++|.++++|..     ..++||..|+++
T Consensus       417 C~c~C~~G~y~-~~g~C~~C~~sCa~C~~~~~~~CtsC~~g~~L~~~~~~~~~gtCv~~C~~~  478 (800)
T PTZ00214        417 CRCVCKPTFYN-SSGTCTPCTDSCAVCKDGTPTGCQQCSPGKILEFSIVSSESADCVDQCSVG  478 (800)
T ss_pred             ccccCCCCccc-CCCCccCCCCcccccCCCCcCcCccCCCCcEecccccCCCCCceeccCCCC
Confidence            55578999996 4789999999999999999999999999987742     357899999864

>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A

Probab=98.57  E-value=3e-08  Score=58.06  Aligned_cols=38  Identities=45%  Similarity=1.224  Sum_probs=28.4

Q ss_pred             CcccccCCCCe---------eeCCccccccCcccc-ccCCCCCccccc
Q psy5836           2 STCVSRCPPRS---------FPNQGGVCWPCHESC-ETCAGAGQDSCL   39 (66)
Q Consensus         2 ~~Cv~~C~~g~---------y~~~~~~C~~C~~~C-~~C~g~~~~~C~   39 (66)
                      ++||++||.|+         |.+..++|++||++| ..|+||.+.+|.
T Consensus        85 ~~Cv~~CP~~~~~~~~~~~~~~~~~~~C~~Ch~~C~~gC~Gp~~~~C~  132 (132)
T PF14843_consen   85 GQCVSSCPEGTYGENFPIYYYPDSNGVCQPCHPSCTQGCTGPSASDCQ  132 (132)
T ss_dssp             TEEESS--EEEEBTTSEEEEEE-TTSBEEE-STTSTT-BSSSSTTCC-
T ss_pred             CcccCcCCCCCccccccceecCCCCCccCCcCccccCcCCCCCcccCC
Confidence            57999999994         556689999999999 899999998873

...

>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation []

Probab=98.45  E-value=1.4e-07  Score=56.34  Aligned_cols=42  Identities=40%  Similarity=1.120  Sum_probs=31.3

Q ss_pred             ccccccCcccc-ccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836          17 GGVCWPCHESC-ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus        17 ~~~C~~C~~~C-~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      ...|  ||++| ..|+||++++|++|+  .+.+  +++||+.||+|+|.
T Consensus        47 ~~~C--Ch~eClGGC~gp~~~~C~aCr--~~~~--~g~Cv~~CP~~~Y~   89 (149)
T PF00757_consen   47 PGDC--CHEECLGGCSGPNPSDCYACR--HFSY--NGTCVEQCPPGKYE   89 (149)
T ss_dssp             CGGB----TTEESEESSSSTTSESCES--SEEE--TTEEESS-STT-EE
T ss_pred             cccc--hhHHHhhcCCCCCCCcCHHHh--CcCc--CCeecccCChhhcc
Confidence            4555  99999 689999999999999  3443  69999999999874

; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....

>KOG4260|consensus

Probab=97.47  E-value=2.5e-05  Score=51.09  Aligned_cols=48  Identities=29%  Similarity=0.627  Sum_probs=40.1

Q ss_pred             cCCCCeeeC----CccccccCccccc-cCCCCCcccccccCCCcccccccccccc
Q psy5836           7 RCPPRSFPN----QGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQ   56 (66)
Q Consensus         7 ~C~~g~y~~----~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~   56 (66)
                      .|..+||..    +..+|.+||..|. .|+|+++.+|..|+.+|.|.  ...||+
T Consensus       183 ~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~ld--e~gCvD  235 (350)
T KOG4260|consen  183 YCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKLD--EEGCVD  235 (350)
T ss_pred             ccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhcccceec--cccccc
Confidence            567778753    2689999999997 99999999999999999986  466664

>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation []

Probab=97.36  E-value=8.2e-05  Score=44.49  Aligned_cols=53  Identities=30%  Similarity=0.729  Sum_probs=30.6

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      ++||++||.|+|.- +.+|.. ...|..-..       .=.. ..++..++.||..||.||..
T Consensus        77 g~Cv~~CP~~~Y~~-~~rCVt-~~~C~~~~~-------~~~~-~~~~~~~~~Cv~~CP~gy~~  129 (149)
T PF00757_consen   77 GTCVEQCPPGKYEF-GRRCVT-KEECPSMCE-------SSKE-YPFLIFNGSCVRECPSGYME  129 (149)
T ss_dssp             TEEESS-STT-EEE-TTEEE--HSSHHCCTT-------TTST-TSEEEETTEEESS-TTTEEE
T ss_pred             CeecccCChhhccc-ccEeec-cccCCchhh-------cccc-cceeeeCCcccccCCCCCEE
Confidence            67999999999975 666653 234432211       0011 22223579999999999986

; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....

>KOG4258|consensus

Probab=97.07  E-value=0.00026  Score=52.03  Aligned_cols=56  Identities=32%  Similarity=0.926  Sum_probs=40.3

Q ss_pred             cccccCCCCee--eCCccccccCcccc-ccCCCCCc-ccccccCCCccccccccccccccccCccc
Q psy5836           3 TCVSRCPPRSF--PNQGGVCWPCHESC-ETCAGAGQ-DSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         3 ~Cv~~C~~g~y--~~~~~~C~~C~~~C-~~C~g~~~-~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      .|..+||..--  -++++.|  ||..| ..|..+.. +.|.+|+.  ++  .+|.||.+||.+||.
T Consensus       215 ~CQK~Cp~~~g~gC~ang~c--CH~eClGgC~~~~dptaC~aCr~--~y--~~G~CV~~Cp~~~Y~  274 (1025)
T KOG4258|consen  215 HCQKSCPENCGNGCTANGEC--CHEECLGGCSQPNDPTACVACRG--LY--DDGVCVEACPPDYYL  274 (1025)
T ss_pred             chhccCccccccCccccccc--ccHhhccCcCCCCChhHhHHhhc--cc--cCCceeccCCcchhh
Confidence            46667764221  2345565  99999 68998875 78999983  22  259999999999986

>KOG1025|consensus

Probab=97.05  E-value=0.0003  Score=52.06  Aligned_cols=35  Identities=34%  Similarity=1.089  Sum_probs=29.1

Q ss_pred             Ccccc-ccCCCCCcccccccCCCccccccccccccccccC
Q psy5836          23 CHESC-ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG   61 (66)
Q Consensus        23 C~~~C-~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g   61 (66)
                      ||..| ..|+||+..+|++|.  .|.  +.+.|+..||.-
T Consensus       223 Ch~~CagGCtGp~~~dC~AC~--~f~--d~G~C~~~CP~~  258 (1177)
T KOG1025|consen  223 CHSECAGGCTGPKDKDCIACR--KFN--DSGICVETCPQL  258 (1177)
T ss_pred             HHHHhccCCCCCCCCCeeeec--ccc--cCceecccCCCc
Confidence            89999 699999999999998  443  468888888865

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=96.47  E-value=0.004  Score=34.79  Aligned_cols=49  Identities=24%  Similarity=0.667  Sum_probs=38.0

Q ss_pred             CcccccCCCCeeeCC-ccccccCc-cccccCCCCCcccccccCCCccccccccccc
Q psy5836           2 STCVSRCPPRSFPNQ-GGVCWPCH-ESCETCAGAGQDSCLTCAPAHLRVTDLAICL   55 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~-~~~C~~C~-~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv   55 (66)
                      .+| ..|..|||.+. ...|.+|. +.|.+|.++  ..|..|..+|++.  .+.|+
T Consensus         4 ~~C-t~C~~g~~~~~~~~~C~~C~~~~C~~C~~~--~~C~~C~~GY~~~--~~~Cv   54 (96)
T PTZ00382          4 AVC-TSCDSDKKPNKDGSGCVLCSVGNCKSCVVD--GVCGECNSGFSLD--NGKCV   54 (96)
T ss_pred             ccc-CcCCCCCccCCCCCcCCcCCCCCCcCCCCC--CccccCcCCcccC--CCccc
Confidence            356 47899998865 45699998 599999864  5799999998764  56776

>PF13948 DUF4215: Domain of unknown function (DUF4215)

Probab=95.72  E-value=0.0068  Score=29.61  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             ccccCCCccccccccccccccccCccc
Q psy5836          38 CLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus        38 C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      |+.|..+|++....++|++.|++|+..
T Consensus         1 C~~C~~G~~l~~~~~~C~~~CGDgii~   27 (47)
T PF13948_consen    1 CLQCQDGYYLNQNNNKCEPICGDGIIV   27 (47)
T ss_pred             CCcccCccEEcCCCCccccccCCCeEE
Confidence            678888998876678899999998653

>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.08  E-value=0.0071  Score=30.28  Aligned_cols=47  Identities=32%  Similarity=0.848  Sum_probs=23.2

Q ss_pred             CcccccCCCCeeeCC---ccccccCccccccCCCCCcccccccCCCccccc-cccccccccccCcc
Q psy5836           2 STCVSRCPPRSFPNQ---GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVT-DLAICLQQCPEGYF   63 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~---~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~-~~~~Cv~~Cp~g~y   63 (66)
                      .+|...|+.|++...   ...|         |.     +|+.|..+.+... +...|+ .||+|++
T Consensus         3 S~CS~~C~pG~~k~~~~~~~~C---------Cw-----~C~~C~~~~is~~~~~~~C~-~C~~~~w   53 (54)
T PF07562_consen    3 SVCSEPCPPGQRKKIQKGQPSC---------CW-----DCVPCPEGEISNQTDSTSCT-KCPEGQW   53 (54)
T ss_dssp             --SS----TTTEEEE--SSS-S----------------EEEE--TTEEEE--ETTEEE-E--TTEE
T ss_pred             cccCCCCCCCCEECccCCCcce---------EE-----EeecCCCCcEECCCCccccc-cCCCccC
Confidence            578999999998743   3334         22     6788887777653 456787 6888876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=94.48  E-value=0.028  Score=38.22  Aligned_cols=40  Identities=28%  Similarity=0.761  Sum_probs=29.9

Q ss_pred             cCCCCeeeCCccccccCccccccCCCCCcccccccCCCcccc
Q psy5836           7 RCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         7 ~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~   48 (66)
                      .|..|||.+ ...|.+|+..|.+|.+ ....|++|..++|+.
T Consensus       274 ~C~~g~~~~-~~~C~~C~~~c~tC~g-~~~~Ct~C~~Gyy~~  313 (397)
T PF03302_consen  274 TCANGYYKD-VGGCTKCTAGCATCTG-DAATCTACADGYYKS  313 (397)
T ss_pred             cccCCcccc-ccccccCCCcccccCC-ccccccchhcccccc
Confidence            566677764 6788888888888885 457888888887753

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains

Probab=93.58  E-value=0.099  Score=28.86  Aligned_cols=22  Identities=36%  Similarity=1.105  Sum_probs=11.7

Q ss_pred             ccccCCCCeeeCC------ccccccCcc
Q psy5836           4 CVSRCPPRSFPNQ------GGVCWPCHE   25 (66)
Q Consensus         4 Cv~~C~~g~y~~~------~~~C~~C~~   25 (66)
                      |-..||.|++...      +.+|.+|.+
T Consensus        13 cC~~C~pG~~~~~~C~~~~~t~C~~C~~   40 (98)
T cd00185          13 CCDQCPPGTYLSKDCTPGSDTVCEPCPP   40 (98)
T ss_pred             CCCCCCCCccCCCcCCCCCCCeecCCCC
Confidence            3456777766532      244555544

When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.

>KOG4258|consensus

Probab=93.41  E-value=0.024  Score=42.24  Aligned_cols=19  Identities=32%  Similarity=0.819  Sum_probs=15.5

Q ss_pred             CcccccCCCCeeeCCcccc
Q psy5836           2 STCVSRCPPRSFPNQGGVC   20 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C   20 (66)
                      +.||.+||.++|...+.+|
T Consensus       262 G~CV~~Cp~~~Y~~e~~RC  280 (1025)
T KOG4258|consen  262 GVCVEACPPDYYLFENWRC  280 (1025)
T ss_pred             CceeccCCcchhhhcccee
Confidence            5799999999998766555

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=90.73  E-value=0.48  Score=22.77  Aligned_cols=9  Identities=44%  Similarity=1.191  Sum_probs=4.0

Q ss_pred             cccccCCCc
Q psy5836          37 SCLTCAPAH   45 (66)
Q Consensus        37 ~C~~C~~~~   45 (66)
                      .|+.|..+.
T Consensus        27 ~C~~Cp~g~   35 (48)
T PF07699_consen   27 SCTPCPPGS   35 (48)
T ss_pred             cCccCcCCC
Confidence            444444443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.

>PHA02637 TNF-alpha-receptor-like protein; Provisional

Probab=88.20  E-value=0.77  Score=27.00  Aligned_cols=42  Identities=14%  Similarity=0.519  Sum_probs=28.3

Q ss_pred             cCCCCeeeCCccccccCcccc---ccCCCCCcccccccCCCcccc
Q psy5836           7 RCPPRSFPNQGGVCWPCHESC---ETCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         7 ~C~~g~y~~~~~~C~~C~~~C---~~C~g~~~~~C~~C~~~~~~~   48 (66)
                      .|.++.|...+.-|.+|.+.=   .-|+..+.+.|..|..+.|+.
T Consensus        31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe   75 (127)
T PHA02637         31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTS   75 (127)
T ss_pred             CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeec
Confidence            566666654456677776554   456666677888888887654

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains

Probab=87.96  E-value=1.4  Score=24.24  Aligned_cols=12  Identities=25%  Similarity=0.913  Sum_probs=7.7

Q ss_pred             cccccccccCcccC
Q psy5836          52 AICLQQCPEGYFES   65 (66)
Q Consensus        52 ~~Cv~~Cp~g~y~~   65 (66)
                      ..|.  |++|||.+
T Consensus        75 t~C~--C~~G~y~~   86 (98)
T cd00185          75 TVCG--CKPGFYCL   86 (98)
T ss_pred             CeEe--CCCCCEec
Confidence            4554  78887753

When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.

>PHA02637 TNF-alpha-receptor-like protein; Provisional

Probab=84.11  E-value=1.4  Score=25.93  Aligned_cols=40  Identities=28%  Similarity=0.751  Sum_probs=22.1

Q ss_pred             cccccCCCCeeeCC------ccccccCccccccCCCCCcccccccC
Q psy5836           3 TCVSRCPPRSFPNQ------GGVCWPCHESCETCAGAGQDSCLTCA   42 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~------~~~C~~C~~~C~~C~g~~~~~C~~C~   42 (66)
                      .|-..||.|+|...      ..+|.+|.+.=.+=..-....|+.|.
T Consensus        42 ~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~~C~~C~   87 (127)
T PHA02637         42 LCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLPACLSCN   87 (127)
T ss_pred             eEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCCcccccC
Confidence            45667888877632      34676776553322223345666665

>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []

Probab=84.09  E-value=0.55  Score=21.54  Aligned_cols=16  Identities=38%  Similarity=1.271  Sum_probs=10.2

Q ss_pred             CCCCeeeCCc--cccccC
Q psy5836           8 CPPRSFPNQG--GVCWPC   23 (66)
Q Consensus         8 C~~g~y~~~~--~~C~~C   23 (66)
                      |+.|+|.+..  ..|.+|
T Consensus         1 C~~g~y~~~~~~~~C~~C   18 (39)
T PF00020_consen    1 CPPGTYSDSENHPQCLPC   18 (39)
T ss_dssp             ECTTEEEESSCSSSEEEE
T ss_pred             CccCcccCCCCCCcCCcc
Confidence            6888888642  455444

CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=82.62  E-value=0.92  Score=20.80  Aligned_cols=14  Identities=29%  Similarity=0.838  Sum_probs=10.3

Q ss_pred             cCCCCeeeCCcccc
Q psy5836           7 RCPPRSFPNQGGVC   20 (66)
Q Consensus         7 ~C~~g~y~~~~~~C   20 (66)
                      .||+||..+.+..|
T Consensus        21 ~CPeGyIlde~~~c   34 (34)
T PF09064_consen   21 FCPEGYILDEGSMC   34 (34)
T ss_pred             eCCCceEecCCccC
Confidence            48899988776554

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>smart00208 TNFR Tumor necrosis factor receptor / nerve growth factor receptor repeats

Probab=80.29  E-value=2.8  Score=18.87  Aligned_cols=16  Identities=25%  Similarity=0.877  Sum_probs=9.6

Q ss_pred             CCCCeeeCCc--cccccC
Q psy5836           8 CPPRSFPNQG--GVCWPC   23 (66)
Q Consensus         8 C~~g~y~~~~--~~C~~C   23 (66)
                      |+.|+|.+..  ..|++|
T Consensus         1 C~~g~y~~~~~~~~C~~C   18 (39)
T smart00208        1 CKEGTYCSDGNHSSCLRC   18 (39)
T ss_pred             CCCCeecCCCCCccCccC
Confidence            6778887643  345444

Repeats in growth factor receptors that are involved in growth factor binding. TNF/TNFR

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	8e-08
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	8e-04
1mox_A	501	Epidermal growth factor receptor; EGFR, receptor,	9e-06
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	1e-05
1igr_A	478	Insulin-like growth factor receptor 1; hormone rec	6e-05

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 45.7 bits (107), Expect = 8e-08
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 3   TCVSRCPPRSFPNQGGVCWP---CHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCP 59
            CV  CPP  +  Q   C     C +    C  + +  C      H  V     C+ +CP
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGC------HQYVIHNNKCIPECP 289

Query: 60  EGYFESK 66
            GY  + 
Sbjct: 290 SGYTMNS 296

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 34.5 bits (78), Expect = 8e-04
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 1   MSTCVSRCPPRSFPNQG-GVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQ 57
            S C   CP     +        CH  C   C+     + C+ C            C++ 
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN----FYLDGRCVET 240

Query: 58  CPEGYFESK 66
           CP  Y+  +
Sbjct: 241 CPPPYYHFQ 249

>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501

 Score = 39.9 bits (92), Expect = 9e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
           +TC   CPP    N        +   +   GA   +C+   P +  VTD   C++ C   
Sbjct: 234 ATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA---TCVKKCPRNYVVTDHGSCVRACGAD 290

Query: 62  YFE 64
            +E
Sbjct: 291 SYE 293

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 3   TCVSRCPPRSFPNQGGVCWP---CHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCP 59
            CV  CPP  +  Q   C     C +    C  + +  C      H  V     C+ +CP
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGC------HQYVIHNNKCIPECP 289

Query: 60  EGYFE 64
            GY  
Sbjct: 290 SGYTM 294

>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 2   STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
             CV  CPP ++  +G  C                     + +   V     C+Q+CP G
Sbjct: 228 GVCVPACPPNTYRFEGWRCVDRDFCANIL-------SAESSDSEGFVIHDGECMQECPSG 280

Query: 62  YFES 65
           +  +
Sbjct: 281 FIRN 284

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
1n8y_C	608	Protooncoprotein; tyrosin kinase receptor, cell su	99.31
1yy9_A	624	Epidermal growth factor receptor; cell surface rec	99.29
1mox_A	501	Epidermal growth factor receptor; EGFR, receptor,	99.23
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	99.17
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	99.17
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	99.16
1n8y_C	608	Protooncoprotein; tyrosin kinase receptor, cell su	98.96
3i2t_A	551	Epidermal growth factor receptor, isoform A; EGFR,	98.95
3i2t_A	551	Epidermal growth factor receptor, isoform A; EGFR,	98.89
1m6b_A	621	C-ER, receptor protein-tyrosine kinase ERBB-3; cel	98.87
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	98.87
2ahx_A	617	P180ERBB4, receptor tyrosine-protein kinase ERBB-4	98.84
1yy9_A	624	Epidermal growth factor receptor; cell surface rec	98.82
2hr7_A	486	Insulin receptor; hormone receptor, leucine rich r	98.71
1mox_A	501	Epidermal growth factor receptor; EGFR, receptor,	98.6
1igr_A	478	Insulin-like growth factor receptor 1; hormone rec	98.59
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	98.4
1igr_A	478	Insulin-like growth factor receptor 1; hormone rec	97.38
3p0y_A	214	Epidermal growth factor receptor; beta-sandwich, a	97.29
2hey_R	146	Tumor necrosis factor receptor superfamily member;	96.47
1ext_A	162	Tumor necrosis factor receptor; binding protein, c	96.28
3alq_R	173	Tumor necrosis factor receptor superfamily member;	96.27
1du3_A	130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	96.09
3k51_B	176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	95.98
1sg1_X	161	Tumor necrosis factor receptor superfamily member	95.72
3urf_Z	171	Tumor necrosis factor receptor superfamily member;	95.53
4fhq_A	134	Tumor necrosis factor receptor superfamily member;	95.48
2uwi_A	142	CRME protein; receptor, poxvirus TNF receptor, rec	95.32
3u3p_A	313	Tumor necrosis factor receptor superfamily member;	95.18
1du3_A	130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	95.11
1jma_B	167	Herpesvirus entry mediator; V-type IG molecule and	95.08
3me4_A	216	Tumor necrosis factor receptor superfamily member;	95.07
1jma_B	167	Herpesvirus entry mediator; V-type IG molecule and	93.95
3alq_R	173	Tumor necrosis factor receptor superfamily member;	93.91
1sg1_X	161	Tumor necrosis factor receptor superfamily member	93.51
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	93.5
1xu2_R	47	Tumor necrosis factor receptor superfamily member;	91.11
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	90.77
3u3p_A	313	Tumor necrosis factor receptor superfamily member;	90.2
3tje_F	156	Tumor necrosis factor receptor superfamily member;	89.49
1ext_A	162	Tumor necrosis factor receptor; binding protein, c	88.44
1ccv_A	56	AMCI, chymotrypsin inhibitor; protein inhibitor, h	88.37
4fhq_A	134	Tumor necrosis factor receptor superfamily member;	86.63
2hey_R	146	Tumor necrosis factor receptor superfamily member;	86.23
3qd6_R	177	CD40L receptor, tumor necrosis factor receptor sup	86.14
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	85.13
1eai_C	61	Protein (chymotrypsin/elastase isoinhibitor 1); se	85.0
2p3f_N	78	Anti-coagulant protein 5; factor XA, hydrolase; 3.	83.68
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	83.2

>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A

Probab=99.31  E-value=9.2e-13  Score=91.04  Aligned_cols=59  Identities=39%  Similarity=0.990  Sum_probs=51.2

Q ss_pred             CcccccCCC-----CeeeCCccccccCcccc------ccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPP-----RSFPNQGGVCWPCHESC------ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~-----g~y~~~~~~C~~C~~~C------~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.     ++|. ..++|.+||++|      .+|+||++++|++|+  .++  ++++||..||+|||.+
T Consensus       517 ~~Cv~~C~~~~g~~~~~~-~~~~C~~Ch~~C~~~~~~~~C~Gp~~~~C~~C~--~~~--~~g~Cv~~CP~g~~~~  586 (608)
T 1n8y_C          517 QECVEECRVWKGLPREYV-SDKRCLPCHPECQPQNSSETCFGSEADQCAACA--HYK--DSSSCVARCPSGVKPD  586 (608)
T ss_dssp             TEEESCCSSSSSSSCEEC-SSSBCEECCTTBCCCSSSCSBSSSSGGGBSSBS--SEE--ETTEEESSCCEEECCT
T ss_pred             CcccccCCCCCCcCcccC-CCCcccccchhhcccccCCccCCCCCCCCcccc--ccC--cCCeEcccCCCCcccc
Confidence            579999997     7775 478999999999      499999999999999  344  4799999999999865

>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*

Probab=99.29  E-value=1.2e-12  Score=90.64  Aligned_cols=59  Identities=39%  Similarity=0.987  Sum_probs=51.0

Q ss_pred             CcccccCCC-----CeeeCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPP-----RSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~-----g~y~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.     ++|.+ .++|.+||++|+      +|+||++++|++|.  .++  +.++||..||+|||.+
T Consensus       509 g~Cv~~Cp~~~~~~~~y~~-~~~C~~Ch~~C~~~~~~~tC~Gp~~~~C~sC~--~~~--~~g~Cv~~CP~Gy~~~  578 (624)
T 1yy9_A          509 RECVDKCKLLEGEPREFVE-NSECIQCHPECLPQAMNITCTGRGPDNCIQCA--HYI--DGPHCVKTCPAGVMGE  578 (624)
T ss_dssp             SCEESCCCSSSSSSCEEEE-TTEEEECCTTBCCCSSSCSBSSSSTTSBSSBS--SEE--ETTEEESSCCEEECCG
T ss_pred             CEecccCCCccccccccCC-CCcCcCcCHhHhccccCCccCCCCcccccccc--ccC--cCCeecccCCCCcccc
Confidence            689999997     45665 789999999998      99999999999998  344  4799999999999853

>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1

Probab=99.23  E-value=3.2e-12  Score=86.77  Aligned_cols=58  Identities=31%  Similarity=0.804  Sum_probs=50.4

Q ss_pred             CcccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      +.|+..||.++|.+....|  ||++|. +|.||++++|++|..  ++  +.++||..||.|||.+
T Consensus       189 ~~C~~~C~~~~~~~~~~~C--Ch~~C~~~C~gp~~~~C~~C~~--~~--~~~~Cv~~Cp~g~y~~  247 (501)
T 1mox_A          189 IICAQQCSGRCRGKSPSDC--CHNQCAAGCTGPRESDCLVCRK--FR--DEATCKDTCPPLMLYN  247 (501)
T ss_dssp             SSCCTTCSSCBSSSSTTSB--CCTTEEEEESSSSSTTEEEESS--EE--ETTEEESSCCCSEEEE
T ss_pred             CcccCcCCcccccCCCCCe--ECCccCCccCCCCCcccccccc--cC--CCCcccccCCCCeeec
Confidence            3689999999987667889  999998 999999999999995  33  3799999999998764

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=83.09  Aligned_cols=56  Identities=25%  Similarity=0.848  Sum_probs=47.3

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCccc-ccccCCCccccccccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      .|++.|+.++|.+ ...|  ||++|. +|.||++++ |++|..  +++  +++||+.||.|||..
T Consensus       191 ~C~~~C~~~~c~~-~~~C--Ch~~C~ggC~GP~~~~~ClsC~~--~~~--~g~Cv~~CP~g~y~~  248 (486)
T 2hr7_A          191 VCPTICKSHGCTA-EGLC--CHSECLGNCSQPDDPTKCVACRN--FYL--DGRCVETCPPPYYHF  248 (486)
T ss_dssp             CCCGGGTTSCBCT-TCCB--CCTTBCSCBSSSSCTTSBSSBSS--EEE--TTEEESSCCTTCEEE
T ss_pred             cccccCCCCCCcC-CCCc--cCcccccCCCCCCCCCccccCcc--ccC--CCccccccCCCeEec
Confidence            5788888887764 6788  999996 999999999 999993  443  699999999999863

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A*

Probab=99.17  E-value=1.5e-11  Score=85.18  Aligned_cols=57  Identities=40%  Similarity=1.079  Sum_probs=49.8

Q ss_pred             CcccccCCCC-----eeeCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcc
Q psy5836           2 STCVSRCPPR-----SFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF   63 (66)
Q Consensus         2 ~~Cv~~C~~g-----~y~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y   63 (66)
                      ++||++||.+     +|. ..++|.+||++|+      +|.||++++|++|.  .|+  +.++||..||+||+
T Consensus       508 g~Cv~~Cp~~~~~~~~y~-~~~~C~~Ch~~C~~~~~~~tC~Gp~~~~C~~C~--~~~--~~~~Cv~~CP~G~~  575 (621)
T 1m6b_A          508 GVCVTHCNFLNGEPREFA-HEAECFSCHPECQPMEGTATCNGSGSDTCAQCA--HFR--DGPHCVSSCPHGVL  575 (621)
T ss_dssp             SCEESCCSSSCSSSCEEE-ETTEEEECCTTBCCCTTSCSBSSSSSTTBSSBS--SEE--ETTEEESSCCSSCC
T ss_pred             CeecccCCCCcCCccccc-cCCeeccCCcchhccccccccCCCCcccccccc--ccC--cCCcccccCCCCCc
Confidence            6899999986     455 5899999999999      99999999999998  343  47999999999995

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*

Probab=99.16  E-value=1.4e-11  Score=85.23  Aligned_cols=59  Identities=32%  Similarity=0.906  Sum_probs=49.5

Q ss_pred             CcccccCCCCeee----CCccccccCccccc-------cCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           2 STCVSRCPPRSFP----NQGGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         2 ~~Cv~~C~~g~y~----~~~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      ++||++||.++|.    ....+|++||++|+       +|.||++++|++|.  .++  ..++||..||+|||.
T Consensus       506 ~~Cv~~Cp~~~~~~~~~~~~~~C~~Ch~~C~~~~~~~~tC~Gp~~~~C~~C~--~~~--~~~~Cv~~CP~G~~~  575 (617)
T 2ahx_A          506 RICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCS--HFK--DGPNCVEKCPDGLQG  575 (617)
T ss_dssp             TEEESCCSSSSSSSCEEEETTEEEECCTTBCCCCTTCCSBSSSSTTSBSSBS--SEE--ETTEEESSCCEEEEB
T ss_pred             CeeccccCCCcCcccccCCCCchhhcChhhhccccCCCccCCCCCCccccCc--ccc--cCCceeccCCCCccc
Confidence            6799999986432    13789999999998       89999999999999  344  479999999999984

>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A

Probab=98.96  E-value=4.4e-10  Score=77.74  Aligned_cols=54  Identities=31%  Similarity=0.770  Sum_probs=44.5

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcc
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF   63 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y   63 (66)
                      .|+.+|+. .+.+....|  ||++|. +|+||++++|++|+.  ++  ++++||..||.+||
T Consensus       198 ~C~~~C~~-c~~~~~~~C--Ch~~C~ggC~gp~~~~C~aC~~--~~--~~g~Cv~~CP~~~~  252 (608)
T 1n8y_C          198 ICTSGCAR-CKGRLPTDC--CHEQCAAGCTGPKHSDCLACLH--FN--HSGICELHCPALVT  252 (608)
T ss_dssp             TCCTTCSC-BSSSSGGGB--CCTTBSSCBSSSSTTSBSSBSS--EE--ETTEEESSCCCSEE
T ss_pred             ccCCCCcc-ccCCCCCCc--cChhhCccCCCCCCCccccCcc--cc--cCCchhccCCCccc
Confidence            67888883 343457888  999997 999999999999994  44  36999999999974

>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A

Probab=98.95  E-value=2.4e-10  Score=78.43  Aligned_cols=58  Identities=28%  Similarity=0.696  Sum_probs=48.2

Q ss_pred             CcccccCCCCeeeC-CccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPN-QGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~-~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      .+|+++|+.|++.+ ....|  ||++|. +|+||++++|++|+.  ++  +++.||..||.++|.+
T Consensus       190 ~~C~~~C~~~~c~~~~~~~C--Ch~~C~g~C~gp~~~~C~~C~~--~~--~~~~Cv~~Cp~~~~~n  249 (551)
T 3i2t_A          190 LTCSPQCAGGRCYGPKPREC--CHLFCAGGCTGPTQKDCIACKN--FF--DEGVCKEECPPMRKYN  249 (551)
T ss_dssp             SSSCSSSTTCCCSSSSSSCC--CCSSEEEEESSSSSTTEEEESS--EE--ETTEEESSCCCSEEEE
T ss_pred             CccCCcCCCCcccCCCCCcc--cCcccCCCCCCCCccccccchh--hc--cCCeeeccCCchhccc
Confidence            36889999877654 35778  999998 999999999999995  44  3699999999998764

>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A

Probab=98.89  E-value=5.9e-10  Score=76.53  Aligned_cols=41  Identities=37%  Similarity=0.985  Sum_probs=35.2

Q ss_pred             CcccccCC--CCeeeCCccccccCccccccCCCCCcccccccC
Q psy5836           2 STCVSRCP--PRSFPNQGGVCWPCHESCETCAGAGQDSCLTCA   42 (66)
Q Consensus         2 ~~Cv~~C~--~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~   42 (66)
                      ++||++||  .|+|...+.+|.+||++|++|+||++++|++|+
T Consensus       507 ~~Cv~~C~~~~g~y~~~~~~C~~Ch~~C~tC~G~~~~~C~sC~  549 (551)
T 3i2t_A          507 GTCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECV  549 (551)
T ss_dssp             TEEESCSCSSSCCCCCSSSCCCCCCSSCSSBCC---CCBSSCC
T ss_pred             CCccccCCCCCCcccCCCCcccCCCCcccCCCCcCcCcccccC
Confidence            57999999  688877789999999999999999999999997

>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A*

Probab=98.87  E-value=1.6e-09  Score=75.01  Aligned_cols=57  Identities=28%  Similarity=0.906  Sum_probs=46.9

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      .|+.+|+.+.+.+....|  ||++|. +|+||++++|++|+  .++  +++.||..||.|+|.+
T Consensus       190 ~C~~~C~~~c~~~~~~~C--Ch~~C~g~C~gp~~~~C~~C~--~~~--~~~~Cv~~Cp~~~~~~  247 (621)
T 1m6b_A          190 ICAPQCNGHCFGPNPNQC--CHDECAGGCSGPQDTDCFACR--HFN--DSGACVPRCPQPLVYN  247 (621)
T ss_dssp             CCCTTSSSCBSSSSTTCB--CCTTBSSCBSSSSGGGBSSBS--SEE--ETTEEESSCSCSEEEC
T ss_pred             cccccCCcccccCCCCCc--cChhhcCCCCCCCcccccccc--ccc--cCCceeccCCCccccc
Confidence            578888777665556788  999997 99999999999999  344  3799999999997653

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=98.87  E-value=1.1e-09  Score=77.53  Aligned_cols=56  Identities=25%  Similarity=0.848  Sum_probs=44.6

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCccc-ccccCCCccccccccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      .|...|+.+.+.+ .+.|  ||++|. +|.||++++ |++|+.  +++  +++||..||.++|..
T Consensus       191 ~C~~~C~~~~c~~-~~~C--Ch~~C~ggC~gp~~~~~C~~C~~--~~~--~~~Cv~~Cp~~~y~~  248 (897)
T 2dtg_E          191 VCPTICKSHGCTA-EGLC--CHSECLGNCSQPDDPTKCVACRN--FYL--DGRCVETCPPPYYHF  248 (897)
T ss_dssp             CCCTTTGGGCBCS-SSCB--CCTTCCSEESSSSCGGGEECCSS--CBB--TTBCCSSCCSSCCCC
T ss_pred             cccccccCCcccC-CCCc--cChhhCcCCCCCCCCCceeECcc--Ccc--CCcchhhcCCceeEe
Confidence            4556666666654 5788  999996 999999988 999983  443  699999999998853

>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*

Probab=98.84  E-value=1.3e-09  Score=75.38  Aligned_cols=44  Identities=27%  Similarity=0.758  Sum_probs=38.9

Q ss_pred             CcccccCCCCeee---------CCccccccCccccc-cCCCCCcccccccCCCc
Q psy5836           2 STCVSRCPPRSFP---------NQGGVCWPCHESCE-TCAGAGQDSCLTCAPAH   45 (66)
Q Consensus         2 ~~Cv~~C~~g~y~---------~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~   45 (66)
                      ++||..||.|||.         +...+|++||++|. +|.||++++|++|.+++
T Consensus       563 ~~Cv~~CP~G~~~~~~~~~~y~~~~~~C~~Ch~~C~~~C~Gp~~~~C~sC~~~y  616 (617)
T 2ahx_A          563 PNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCIYYPWTG  616 (617)
T ss_dssp             TEEESSCCEEEEBSSSEEEEEECTTSBEEECCTTCTTCBSSSSTTCBCCCTTSC
T ss_pred             CceeccCCCCcccccccceeccCCCCcccccCccccccCCCCCCCcCCCCCCCC
Confidence            5799999999873         45789999999998 89999999999998764

>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*

Probab=98.82  E-value=2.6e-09  Score=74.09  Aligned_cols=56  Identities=32%  Similarity=0.838  Sum_probs=45.2

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      .|+.+|+.+.+.+....|  ||++|. +|+||++++|++|+.  ++  .+++||..||++||.
T Consensus       190 ~C~~~C~~~c~~~~~~~C--Ch~~C~ggC~gp~~~~C~aC~~--~~--~~g~Cv~~CP~~~~y  246 (624)
T 1yy9_A          190 ICAQQCSGRCRGKSPSDC--CHNQCAAGCTGPRESDCLVCRK--FR--DEATCKDTCPPLMLY  246 (624)
T ss_dssp             TSCSSCSSCBSSSSGGGB--CCTTBSSCBSSSSTTCBSSBSS--EE--SSSCEESSCCCSEEE
T ss_pred             ccccccCCccccCCCCCc--cChhcccCCCCCCcCccccccc--Cc--cCCcccccCCCcccc
Confidence            577777765554446778  999997 999999999999995  44  379999999999653

>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}

Probab=98.71  E-value=9e-10  Score=74.58  Aligned_cols=60  Identities=23%  Similarity=0.523  Sum_probs=43.1

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCC-cccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAG-QDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~-~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.|+|.....+|.. +++|..|.++- ...+++|. ++++  +.+.||..||+|||.+
T Consensus       235 g~Cv~~CP~g~y~~~~~~C~~-~~~C~~c~~~c~~~~~~sC~-~~~~--~~~~CV~~CP~g~~~~  295 (486)
T 2hr7_A          235 GRCVETCPPPYYHFQDWRCVN-FSFCQDLHHKCKNSRRQGCH-QYVI--HNNKCIPECPSGYTMN  295 (486)
T ss_dssp             TEEESSCCTTCEEETTTEEEC-HHHHHHHHHHHHHTCSSSCC-CCEE--ETTEEESSCCTTEEEC
T ss_pred             CccccccCCCeEecCCCEEec-CcccccCCCcccCCCCcccc-cEee--ECCEecccCCCCcccC
Confidence            689999999999865677776 56665543321 12357886 4443  4799999999999986

>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1

Probab=98.60  E-value=1.5e-08  Score=68.81  Aligned_cols=60  Identities=23%  Similarity=0.508  Sum_probs=44.9

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCccccc-ccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCL-TCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~-~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||.+||.|+|.+....+..+++.+...++   ..|+ +|+.++++ ...++||..||+|||.+
T Consensus       234 ~~Cv~~Cp~g~y~~~~~~~~~~~p~~~~~~~---~~Cv~~Cp~~~~l-~~~g~Cv~~Cp~G~y~~  294 (501)
T 1mox_A          234 ATCKDTCPPLMLYNPTTYQMDVNPEGKYSFG---ATCVKKCPRNYVV-TDHGSCVRACGADSYEM  294 (501)
T ss_dssp             TEEESSCCCSEEEETTTTEEEECTTCCEEET---TEEESSCCTTCEE-CTTSBEESSCCSSCCCB
T ss_pred             CcccccCCCCeeecCCceEEecCCCccccch---hhhhcccCcccEe-ccCCEEeccCCCCCeec
Confidence            6799999999998876666666666554332   4675 78777665 24799999999999963

>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1

Probab=98.59  E-value=1.8e-08  Score=68.20  Aligned_cols=54  Identities=30%  Similarity=0.938  Sum_probs=41.1

Q ss_pred             ccccCCCCeeeCCccccccCcccc-ccCCCCCccc-ccccCCCccccccccccccccccCccc
Q psy5836           4 CVSRCPPRSFPNQGGVCWPCHESC-ETCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         4 Cv~~C~~g~y~~~~~~C~~C~~~C-~~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      |+++|..+.+. ....|  ||+.| .+|+||++++ |++|+  .+.  +++.||+.||+++|.
T Consensus       185 C~~~C~~~~c~-~~~~C--Ch~~C~ggC~gp~~~~~C~aC~--~~~--~~g~Cv~~CP~~~y~  240 (478)
T 1igr_A          185 CPSTCGKRACT-ENNEC--CHPECLGSCSAPDNDTACVACR--HYY--YAGVCVPACPPNTYR  240 (478)
T ss_dssp             CCGGGTTSCBC-TTSCB--CCTTEEEEESSTTCTTSEEEES--SEE--CSSSEESSCCTTCEE
T ss_pred             ccccCCCcccc-CCCcc--cccccCcCCCCCCCCcceeeee--eec--cCCcCcccCCCceeE
Confidence            45555543333 35778  99999 6999999887 99999  443  479999999999874

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=98.40  E-value=6.7e-08  Score=68.50  Aligned_cols=55  Identities=27%  Similarity=0.660  Sum_probs=41.2

Q ss_pred             CcccccCCCCeeeCC------ccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQ------GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~------~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.|+|...      ...|+.||+.|.+|.+      ++|. .+..  +.+.||..||.||+.+
T Consensus       235 ~~Cv~~Cp~~~y~~~~~~C~~~~~C~~~~~~c~~~~~------~~c~-~~~~--~~~~Cv~~CP~g~~~~  295 (897)
T 2dtg_E          235 GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR------QGCH-QYVI--HNNKCIPECPSGYTMN  295 (897)
T ss_dssp             TBCCSSCCSSCCCCTTSBCCCHHHHHHHSSCCCSTTT------TSCC-CCEE--ETTEEESSCCSSCEEC
T ss_pred             CcchhhcCCceeEecCcEEcChhHhhccCccccCCCc------cccc-ceee--ECCEEccCCCCCcccc
Confidence            689999999999753      3457777888777655      4563 3333  4799999999999875

>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1

Probab=97.38  E-value=6.6e-05  Score=50.89  Aligned_cols=57  Identities=25%  Similarity=0.616  Sum_probs=37.3

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.++|...+.+|..- ..|.....+    +.+|...+..  ..+.||..||+||+.+
T Consensus       228 g~Cv~~CP~~~y~~~~~rCvt~-~~C~~~~~~----~~~~~~~~~~--~~~~Cv~~CP~g~~~~  284 (478)
T 1igr_A          228 GVCVPACPPNTYRFEGWRCVDR-DFCANILSA----ESSDSEGFVI--HDGECMQECPSGFIRN  284 (478)
T ss_dssp             SSEESSCCTTCEEETTTEEECH-HHHHTSSTT----SCCCSCCCEE--ETTEEESSCCTTEEES
T ss_pred             CcCcccCCCceeEecCcceecH-HHHhhcCCc----ccccccceee--ECCeecccCCCCCccc
Confidence            5799999999987545555432 244443332    3345544443  4799999999998764

>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR, immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB: 3b2u_A* 3c09_A*

Probab=97.29  E-value=8.6e-05  Score=45.84  Aligned_cols=36  Identities=25%  Similarity=0.749  Sum_probs=22.5

Q ss_pred             ccc----ccCccccc--cCCCCCcccccccCCCccccccccccccc
Q psy5836          18 GVC----WPCHESCE--TCAGAGQDSCLTCAPAHLRVTDLAICLQQ   57 (66)
Q Consensus        18 ~~C----~~C~~~C~--~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~   57 (66)
                      ..|    ..||++|.  .|.||++++|.+|+  .|.+  ++.||+.
T Consensus       164 ~~C~~~~~~C~~~C~~~gCWGpgp~~C~~C~--~~~~--~~~cv~~  205 (214)
T 3p0y_A          164 NSCKATGQVCHALCSPEGCWGPEPRDCVSCR--NVSR--GRECVDK  205 (214)
T ss_dssp             HHHHHTTCSCCTTBCTTCBSSSSGGGBSSBC---------------
T ss_pred             cccccCCCCCCccCCCCCccCcCcccccccc--CEee--CCeeecC
Confidence            467    68999994  79999999999999  4543  5889863

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R

Probab=96.47  E-value=0.0027  Score=36.57  Aligned_cols=34  Identities=24%  Similarity=0.628  Sum_probs=18.8

Q ss_pred             CCCCCcccccccCCCccccc---cccccccccccCcccC
Q psy5836          30 CAGAGQDSCLTCAPAHLRVT---DLAICLQQCPEGYFES   65 (66)
Q Consensus        30 C~g~~~~~C~~C~~~~~~~~---~~~~Cv~~Cp~g~y~~   65 (66)
                      |+......|. |.+|+|...   .+..|. .||.|+|.+
T Consensus        75 Ct~t~dt~C~-C~~G~y~~~g~~~~~~C~-~C~~Gtfs~  111 (146)
T 2hey_R           75 CTATQDTVCR-CRAGTQPLDSYKPGVDCA-PCPPGHFSP  111 (146)
T ss_dssp             CBTTBCCEEE-ECTTEEESCSSSTTSSEE-ECCTTEECC
T ss_pred             CccCCCcccc-CCCCeeeCCCcccCcccc-cCCCCcccC
Confidence            4343445563 777766532   123565 588887765

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R

Probab=96.28  E-value=0.0035  Score=36.73  Aligned_cols=39  Identities=26%  Similarity=0.704  Sum_probs=20.7

Q ss_pred             cCCCCeeeCC---ccccccCccccc---------cCCCCCcccccccCCCccc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESCE---------TCAGAGQDSCLTCAPAHLR   47 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C~---------~C~g~~~~~C~~C~~~~~~   47 (66)
                      .||.|+|.+.   ...|++|. .|.         .|+......| .|.+|+|.
T Consensus        44 ~C~~gty~~~~n~~~~C~~C~-~C~~~~~~~~~~~Ct~t~dt~C-~C~~G~y~   94 (162)
T 1ext_A           44 ECESGSFTASENHLRHCLSCS-KCRKEMGQVEISSCTVDRDTVC-GCRKNQYR   94 (162)
T ss_dssp             ECCTTEECCSSBCCSSCEECC-CCCGGGTCEEEECCBTTBCCEE-ECCTTEEE
T ss_pred             cCCCCccccccCCCCcccccC-CCCCCCCEEEEecccCCCCCCc-cCCCCcee
Confidence            5667776653   22355543 331         4544445566 67766664

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}

Probab=96.27  E-value=0.0037  Score=36.90  Aligned_cols=56  Identities=21%  Similarity=0.658  Sum_probs=34.1

Q ss_pred             cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCccccccc----cccc--cccccCcc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRVTDL----AICL--QQCPEGYF   63 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~~~~----~~Cv--~~Cp~g~y   63 (66)
                      .||.|+|.+.   ...|.+|...|.       .|.......| .|.+|+|.....    ..|+  ..||.|++
T Consensus        45 ~C~~gty~~~~n~~~~C~~C~~~C~~g~~~~~~Ct~t~d~~C-~C~~G~y~~~~~~~~c~~C~~~~~C~~G~~  116 (173)
T 3alq_R           45 SCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRIC-TCRPGWYCALSKQEGCRLCAPLRKCRPGFG  116 (173)
T ss_dssp             ECCTTEECCSSBCCSSCEECCCCCCTTEEEEECCCSSSCCEE-EECTTEEEEEECSSSEEEEEECCCBCTTEE
T ss_pred             cCCCCccccCCCCCCccCCCCCcCCCCCEEecCCCCCCCCee-ECCCCeEeccCCCCCCCcccccCcCCCCee
Confidence            5778887754   235777765452       3555556678 488888764321    2565  46676665

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A

Probab=96.09  E-value=0.0076  Score=34.24  Aligned_cols=34  Identities=26%  Similarity=0.754  Sum_probs=12.7

Q ss_pred             cCCCCCcccccccCCCcccccc-cccccc---ccccCcc
Q psy5836          29 TCAGAGQDSCLTCAPAHLRVTD-LAICLQ---QCPEGYF   63 (66)
Q Consensus        29 ~C~g~~~~~C~~C~~~~~~~~~-~~~Cv~---~Cp~g~y   63 (66)
                      .|+......|. |..|+|.... ...|+.   .||.|++
T Consensus        75 ~Ct~t~dtvC~-C~~G~y~~~~~~~~C~~C~t~C~~G~~  112 (130)
T 1du3_A           75 PCTTTRNTVCQ-CEEGTFREEDSPEMCRKCRTGCPRGMV  112 (130)
T ss_dssp             CCCSSSCCEEE-ECTTCEEETTEEEEEEC----------
T ss_pred             cCCCCCCCEec-CCCCeEECCCCCCcCcCCcCcCCcCCE
Confidence            34444455565 6666654321 234444   3665554

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D

Probab=95.98  E-value=0.0056  Score=36.50  Aligned_cols=41  Identities=24%  Similarity=0.709  Sum_probs=25.8

Q ss_pred             cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~   48 (66)
                      .|++|+|.+.   ...|++|...|.       .|+......| .|.+|+|..
T Consensus        45 pC~~gtY~~~~n~~~~C~~C~~~C~~~~~~~~~Ct~tsdtvC-~C~~G~~~~   95 (176)
T 3k51_B           45 PCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRAC-RCRTGFFAH   95 (176)
T ss_dssp             ECCTTEECCSCBCCSSCEECCCCCCSSEEEEECCBTTBCCEE-EECTTEEEE
T ss_pred             cCCCCCeecCCCCCCcCccccCcCCCCCEEeccCcCCCCcee-eccCCeeEC
Confidence            5677777543   346777765553       3566566677 688877764

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X

Probab=95.72  E-value=0.0088  Score=34.75  Aligned_cols=55  Identities=25%  Similarity=0.594  Sum_probs=28.0

Q ss_pred             cCCCC-eeeCC---ccccccCcccc-------ccCCCCCcccccccCCCccccccccccc--cccccCcc
Q psy5836           7 RCPPR-SFPNQ---GGVCWPCHESC-------ETCAGAGQDSCLTCAPAHLRVTDLAICL--QQCPEGYF   63 (66)
Q Consensus         7 ~C~~g-~y~~~---~~~C~~C~~~C-------~~C~g~~~~~C~~C~~~~~~~~~~~~Cv--~~Cp~g~y   63 (66)
                      .|+.| +|.+.   ...|++|. .|       ..|+......|. |.+++|.......|+  ..||.|++
T Consensus        38 ~C~~g~ty~~~~~~~~~C~~C~-~C~~~~~~~~~Ct~t~d~~C~-C~~G~y~~~~~~~C~~C~~C~~G~~  105 (161)
T 1sg1_X           38 PCLDNVTFSDVVSATEPCKPCT-ECLGLQSMSAPCVEADDAVCR-CAYGYYQDEETGHCEACSVCEVGSG  105 (161)
T ss_dssp             ECCTTTEECCSCBSSCCCEECC-CCCTTEEEEECCBTTBCCEEE-ECTTEEECTTTCCEEECCCBCTTEE
T ss_pred             CCcCCCccccCCCCCCcCcCCC-CCCCcceeecCCCcccCceec-cCCCeEeCCCCccccCCccCCCCCe
Confidence            56666 66543   23565553 22       234444455664 777766633334452  24555554

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R

Probab=95.53  E-value=0.011  Score=35.06  Aligned_cols=41  Identities=20%  Similarity=0.631  Sum_probs=25.3

Q ss_pred             cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~   48 (66)
                      .||+|+|.+.   ...|++|.+.|.       .|+......|. |.+|+|..
T Consensus        43 ~C~~gty~~~~n~~~~C~~C~~~C~~~~~~~~~CT~tsdtvC~-C~~G~~~~   93 (171)
T 3urf_Z           43 PCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCE-CKEGRYLE   93 (171)
T ss_dssp             ECCTTEECCSCBCCSSCEECCCCCCTTEEEEECCCSSSCCEEE-ECTTEEEE
T ss_pred             cCCCCcEecCCCCCCccccCcCccCCCCEEeccCcCCCCcccc-CCCCcEEC
Confidence            5677777654   356777765553       35555556675 77777653

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*

Probab=95.48  E-value=0.0093  Score=34.15  Aligned_cols=56  Identities=23%  Similarity=0.654  Sum_probs=27.8

Q ss_pred             cCCCCeeeCC---ccccccCcccc---------ccCCCCCcccccccCCCccccccc-c---cccc--ccccCccc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESC---------ETCAGAGQDSCLTCAPAHLRVTDL-A---ICLQ--QCPEGYFE   64 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C---------~~C~g~~~~~C~~C~~~~~~~~~~-~---~Cv~--~Cp~g~y~   64 (66)
                      .||.|+|.+.   ...|++|.. |         ..|+......|. |.+|+|..... .   .|+.  .||.|+..
T Consensus        41 pC~~gtys~~~n~~~~C~~C~~-C~~~~g~~~~~~CT~t~dtvC~-C~~G~~c~~~~~~~C~~C~~~s~C~pG~~v  114 (134)
T 4fhq_A           41 PCPPGTYIAHLNGLSKCLQCQM-CDPAMGLRASRNCSRTENAVCG-CSPGHFCIVQDGDHCAACRAYATSSPGQRV  114 (134)
T ss_dssp             ECCTTEECCSCBCCSSCEECCC-CCGGGTEEEEECCCSSSCCEEE-ECTTEEEEEEETTEEEEEEEC---------
T ss_pred             CCCCCCEecCCCCCCcCcCCCC-CCccCCeEEeccCCCCCCcccc-CCCCCEecCCCCCCCcCCCCCCcCcCCCeE
Confidence            5677777643   245555543 3         245555667786 88888875321 2   4665  78888754

>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}

Probab=95.32  E-value=0.015  Score=33.40  Aligned_cols=56  Identities=23%  Similarity=0.683  Sum_probs=33.4

Q ss_pred             cCCCCeeeCC---ccccccCcccc-------ccCCCCCcccccccCCCccccc--ccc---ccc--cccccCcc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESC-------ETCAGAGQDSCLTCAPAHLRVT--DLA---ICL--QQCPEGYF   63 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C-------~~C~g~~~~~C~~C~~~~~~~~--~~~---~Cv--~~Cp~g~y   63 (66)
                      .||.|+|.+.   ...|.+|..-.       ..|+......| .|.+|+|...  ..+   .|+  ..||.|++
T Consensus        40 pC~~gty~~~~n~~~~C~~C~~C~~~~~~~~~~Ct~t~dtvC-~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~  112 (142)
T 2uwi_A           40 HCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCTPTTNRIC-HCDSNSYCLLKASDGNCVTCAPKTKCGRGYG  112 (142)
T ss_dssp             ECCTTEECCSSBCCSSCEECCCCCCTTEEEEECCBTTBCCEE-EECTTEEEEEECTTSCEEEEEECCCCCTTEE
T ss_pred             cCCCCCCcccCCCCCccCCCcCcccCCeeEeecCCCCCCCEe-eCCCCcEecccCCCCCCCCCcCCCcCCcCEe
Confidence            5777777654   23466654322       24666566788 5898888532  123   454  46888876

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A

Probab=95.18  E-value=0.017  Score=37.46  Aligned_cols=41  Identities=29%  Similarity=0.826  Sum_probs=22.3

Q ss_pred             cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836           7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~   48 (66)
                      .|+.|+|.+.   ...|..|...|.       .|+......| .|..|+|..
T Consensus        49 pCp~GtYt~~~N~~~~C~~C~~~C~~g~~~~~~CT~TsDtvC-~C~~G~y~~   99 (313)
T 3u3p_A           49 SCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDREC-TCPPGMFQS   99 (313)
T ss_dssp             ECCTTEECCSCBCCSSCEECCCCCCTTCEEEECSBTTBCCEE-ECCTTEEEE
T ss_pred             cCCCCceeccCCCCCcCcccccccCCCCEEecCCcCCCCccc-cCCCCceec
Confidence            4566666543   245666554342       3444445567 677777653

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A

Probab=95.11  E-value=0.016  Score=32.85  Aligned_cols=60  Identities=22%  Similarity=0.508  Sum_probs=36.6

Q ss_pred             ccccCCCCeeeCC-ccccccCccc-cccCCCCCcccc---cccCCCccccc-----cccccccccccCcccC
Q psy5836           4 CVSRCPPRSFPNQ-GGVCWPCHES-CETCAGAGQDSC---LTCAPAHLRVT-----DLAICLQQCPEGYFES   65 (66)
Q Consensus         4 Cv~~C~~g~y~~~-~~~C~~C~~~-C~~C~g~~~~~C---~~C~~~~~~~~-----~~~~Cv~~Cp~g~y~~   65 (66)
                      |=..||.|+|... ...|.+|.+. =.+=.......|   ..|..+++...     .+..|.  |++|||.+
T Consensus        24 ~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~~~~C~~C~~C~~g~~~~~~Ct~t~dtvC~--C~~G~y~~   93 (130)
T 1du3_A           24 SEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQ--CEEGTFRE   93 (130)
T ss_dssp             BTTBBCTTEEECSSSSCEEECCTTTEECCSSBCCSSCEECCCCCTTEEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred             ccCCCCCCceecCCCCcCccCCCcCEEeCCCCCCCcCcCCCCCCcceeeeccCCCCCCCEec--CCCCeEEC
Confidence            4458999999865 5677777665 211111122334   46677655432     356787  99999964

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*

Probab=95.08  E-value=0.027  Score=33.00  Aligned_cols=34  Identities=21%  Similarity=0.537  Sum_probs=14.1

Q ss_pred             CCCCCcccccccCCCcccccc-ccccc-----cccccCccc
Q psy5836          30 CAGAGQDSCLTCAPAHLRVTD-LAICL-----QQCPEGYFE   64 (66)
Q Consensus        30 C~g~~~~~C~~C~~~~~~~~~-~~~Cv-----~~Cp~g~y~   64 (66)
                      |...+...| .|.+|+|.... ...|.     ..||.|++.
T Consensus        73 Ct~t~~t~C-~C~~G~y~~~~~~~~C~~C~~~t~C~~G~~~  112 (167)
T 1jma_B           73 CSRTENAVC-GCSPGHFCIVQDGDHCAACRAYATSSPGQRV  112 (167)
T ss_dssp             CCSSSCCEE-EECTTEEEEECC--CCSEEEECCC-------
T ss_pred             CCCCCCCcc-cCCCCceecCCCCCcCccccCcccCCCCCEE
Confidence            455555677 77777776432 12333     257777664

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B

Probab=95.07  E-value=0.022  Score=34.96  Aligned_cols=32  Identities=19%  Similarity=0.517  Sum_probs=15.1

Q ss_pred             CCCCCcccccccCCCccccccccccc--cccccCc
Q psy5836          30 CAGAGQDSCLTCAPAHLRVTDLAICL--QQCPEGY   62 (66)
Q Consensus        30 C~g~~~~~C~~C~~~~~~~~~~~~Cv--~~Cp~g~   62 (66)
                      |+......|. |.+|+|....-..|+  ..||.|+
T Consensus       103 Ct~t~dtvC~-C~~G~y~~~~c~~C~~cs~C~pG~  136 (216)
T 3me4_A          103 GNHTAPRRCA-CTAGYHWNSDCECCRRNTECAPGF  136 (216)
T ss_dssp             TCSSSCCEEE-ECTTEEEETTTTEEEECCCBCTTE
T ss_pred             CCCCCCcccc-CCCCeEccCCCcchhccccCCCCc
Confidence            4444445554 666666532223343  2444444

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*

Probab=93.95  E-value=0.047  Score=31.98  Aligned_cols=58  Identities=31%  Similarity=0.652  Sum_probs=28.1

Q ss_pred             cccCCCCeeeC------CccccccCccccccCCCCCccccccc---CC--Ccccc-----ccccccccccccCccc
Q psy5836           5 VSRCPPRSFPN------QGGVCWPCHESCETCAGAGQDSCLTC---AP--AHLRV-----TDLAICLQQCPEGYFE   64 (66)
Q Consensus         5 v~~C~~g~y~~------~~~~C~~C~~~C~~C~g~~~~~C~~C---~~--~~~~~-----~~~~~Cv~~Cp~g~y~   64 (66)
                      -..||.|+|..      ....|.+|.+.-.+=...+...|+.|   ..  +++..     ..+..|  .|+.|||.
T Consensus        16 C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~~~~C~~C~~C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~   89 (167)
T 1jma_B           16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC--GCSPGHFC   89 (167)
T ss_dssp             CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBCSSCCEECCCCCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred             CCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCcCccccCCcccccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence            34677777652      24566666554211111112345444   33  33221     124567  68888875

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}

Probab=93.91  E-value=0.04  Score=32.38  Aligned_cols=13  Identities=15%  Similarity=0.537  Sum_probs=5.8

Q ss_pred             CcccccccCCCcc
Q psy5836          34 GQDSCLTCAPAHL   46 (66)
Q Consensus        34 ~~~~C~~C~~~~~   46 (66)
                      +...|..|..+.|
T Consensus        39 ~~t~C~~C~~gty   51 (173)
T 3alq_R           39 SDTVCDSCEDSTY   51 (173)
T ss_dssp             CCCEEEECCTTEE
T ss_pred             CCCcCCcCCCCcc
Confidence            3344444444443

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X

Probab=93.51  E-value=0.066  Score=30.95  Aligned_cols=13  Identities=38%  Similarity=1.065  Sum_probs=8.1

Q ss_pred             ccccccccccCcccC
Q psy5836          51 LAICLQQCPEGYFES   65 (66)
Q Consensus        51 ~~~Cv~~Cp~g~y~~   65 (66)
                      +.+|.  |++|+|.+
T Consensus        76 d~~C~--C~~G~y~~   88 (161)
T 1sg1_X           76 DAVCR--CAYGYYQD   88 (161)
T ss_dssp             CCEEE--ECTTEEEC
T ss_pred             Cceec--cCCCeEeC
Confidence            34563  77887763

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=93.50  E-value=0.034  Score=37.31  Aligned_cols=48  Identities=33%  Similarity=0.877  Sum_probs=27.7

Q ss_pred             CcccccCCCCeeeCC--ccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQ--GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~--~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ..|...|++||....  +..|         |+     +|+.|..+.+. .+...|+ .||++++++
T Consensus       483 S~CS~~C~pG~rk~~~~g~~C---------C~-----~C~~C~~~~~~-td~~~C~-~Cp~~~wpn  532 (555)
T 2e4u_A          483 SQCSDPCAPNEMKNMQPGDVC---------CW-----ICIPCEPYEYL-VDEFTCM-DCGPGQWPT  532 (555)
T ss_dssp             CCSSCCCCTTTEEEECCSSSS---------CC-----EEEECCTTEEE-EETTEEE-ECCTTEEEC
T ss_pred             eeeCCCCCCCeeeeecCCCee---------EE-----ECccCCCceec-CCCccce-eCCcccCcC
Confidence            579999999987632  2233         22     45555554443 3455665 466666554

>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K

Probab=91.11  E-value=0.088  Score=25.13  Aligned_cols=26  Identities=19%  Similarity=0.655  Sum_probs=19.4

Q ss_pred             ccCCCCeeeCC-ccccccCccccccCC
Q psy5836           6 SRCPPRSFPNQ-GGVCWPCHESCETCA   31 (66)
Q Consensus         6 ~~C~~g~y~~~-~~~C~~C~~~C~~C~   31 (66)
                      ..||...|.|. ...|.+|+..|.+-.
T Consensus         2 ~~C~~eqYwD~LL~~C~pC~l~Cs~~~   28 (47)
T 1xu2_R            2 GQCSQNEYFDSLLHACIPCQLRCSSNT   28 (47)
T ss_dssp             --CCTTEEEETTTTEEEEGGGTTTSSS
T ss_pred             CCCcHHHHHHHHHhcccchhcccCCCC
Confidence            57898888877 689999999876433

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=90.77  E-value=0.2  Score=29.02  Aligned_cols=53  Identities=26%  Similarity=0.639  Sum_probs=29.3

Q ss_pred             cCCCCeeeCCc------cccccCc--cc--c---ccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           7 RCPPRSFPNQG------GVCWPCH--ES--C---ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         7 ~C~~g~y~~~~------~~C~~C~--~~--C---~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      .|++|||.+..      ..|++|.  ..  .   .+|.. ....|+.|+.++.    ...|- .|++|||.+
T Consensus        34 ~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~-~tG~C~~C~~g~~----G~~Ce-~C~~Gy~g~   99 (162)
T 1klo_A           34 LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR-LTGECLKCIYNTA----GFYCD-RCKEGFFGN   99 (162)
T ss_dssp             EECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCT-TTCCBCCBCTTEE----TTTTC-EECTTEEEC
T ss_pred             CCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccC-CCCcccCCCCCCc----CCCcC-cCchhhcCC
Confidence            57788886431      3676653  11  0   12321 2346777776643    34554 488888864

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A

Probab=90.20  E-value=0.17  Score=32.84  Aligned_cols=61  Identities=25%  Similarity=0.551  Sum_probs=35.2

Q ss_pred             cccccCCCCeeeCC------ccccccCccccccCCCCCcccccccC----CCccccc-----cccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQ------GGVCWPCHESCETCAGAGQDSCLTCA----PAHLRVT-----DLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~------~~~C~~C~~~C~~C~g~~~~~C~~C~----~~~~~~~-----~~~~Cv~~Cp~g~y~~   65 (66)
                      .|-..||.|+|...      ..+|.+|.+.=.+=...+...|+.|.    .+.+...     .+-+|  .|+.|||.+
T Consensus        24 ~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~~~~C~~C~~~C~~g~~~~~~CT~TsDtvC--~C~~G~y~~   99 (313)
T 3u3p_A           24 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDREC--TCPPGMFQS   99 (313)
T ss_dssp             EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBCCSSCEECCCCCCTTCEEEECSBTTBCCEE--ECCTTEEEE
T ss_pred             CCCCCCCCCceecCcCCCCCCCccccCCCCceeccCCCCCcCcccccccCCCCEEecCCcCCCCccc--cCCCCceec
Confidence            35578999999642      46788886653221111235666654    4544321     24567  588888853

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*

Probab=89.49  E-value=0.28  Score=28.65  Aligned_cols=25  Identities=32%  Similarity=0.772  Sum_probs=15.1

Q ss_pred             CcccccCCCCeeeCC-------ccccccCccc
Q psy5836           2 STCVSRCPPRSFPNQ-------GGVCWPCHES   26 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~-------~~~C~~C~~~   26 (66)
                      +.|-..||.|+|...       ..+|.+|.+.
T Consensus        41 ~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g   72 (156)
T 3tje_F           41 QFCHKPCPPGERKARDCTVNGDEPDCVPCQEG   72 (156)
T ss_dssp             TTCSSCBCTTEEESSCCCSSSCCCCEEECCTT
T ss_pred             CeECCCCCCCCeECCcCCCCCCCCcceeCCCC
Confidence            345567888877631       2466666554

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R

Probab=88.44  E-value=0.39  Score=27.81  Aligned_cols=8  Identities=13%  Similarity=0.625  Sum_probs=5.1

Q ss_pred             ccccCccc
Q psy5836          57 QCPEGYFE   64 (66)
Q Consensus        57 ~Cp~g~y~   64 (66)
                      .|++|||.
T Consensus        87 ~C~~G~y~   94 (162)
T 1ext_A           87 GCRKNQYR   94 (162)
T ss_dssp             ECCTTEEE
T ss_pred             cCCCCcee
Confidence            46777664

>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1

Probab=88.37  E-value=0.59  Score=22.43  Aligned_cols=15  Identities=27%  Similarity=0.587  Sum_probs=8.7

Q ss_pred             cCCCcccccccccccc
Q psy5836          41 CAPAHLRVTDLAICLQ   56 (66)
Q Consensus        41 C~~~~~~~~~~~~Cv~   56 (66)
                      |..|++|. +++.||.
T Consensus        38 C~~G~v~~-~~g~CV~   52 (56)
T 1ccv_A           38 CQEGFLRN-GEGACVL   52 (56)
T ss_dssp             ECTTCEEE-TTTEEEC
T ss_pred             CCCCeeEC-CCCcccC
Confidence            66666654 2366764

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*

Probab=86.63  E-value=0.39  Score=27.26  Aligned_cols=11  Identities=45%  Similarity=0.981  Sum_probs=7.0

Q ss_pred             cccccccccCccc
Q psy5836          52 AICLQQCPEGYFE   64 (66)
Q Consensus        52 ~~Cv~~Cp~g~y~   64 (66)
                      .+|.  |.+|||.
T Consensus        81 tvC~--C~~G~~c   91 (134)
T 4fhq_A           81 AVCG--CSPGHFC   91 (134)
T ss_dssp             CEEE--ECTTEEE
T ss_pred             cccc--CCCCCEe
Confidence            4454  7788774

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R

Probab=86.23  E-value=0.37  Score=27.39  Aligned_cols=23  Identities=35%  Similarity=0.767  Sum_probs=12.6

Q ss_pred             ccccCCCCeeeC------CccccccCccc
Q psy5836           4 CVSRCPPRSFPN------QGGVCWPCHES   26 (66)
Q Consensus         4 Cv~~C~~g~y~~------~~~~C~~C~~~   26 (66)
                      |-..||.|+|..      ...+|.+|.+.
T Consensus        18 CC~~C~pG~~~~~~Ct~~~~t~C~~C~~g   46 (146)
T 2hey_R           18 CCHECRPGNGMVSRCSRSQNTVCRPCGPG   46 (146)
T ss_dssp             EEECBCTTEEEEECCCSSCCCEEEECCTT
T ss_pred             CCCCCCCCCeecccCCCCCCCCcccCCCC
Confidence            334667776642      24566666554

>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}

Probab=86.14  E-value=0.98  Score=26.49  Aligned_cols=7  Identities=43%  Similarity=1.056  Sum_probs=4.8

Q ss_pred             cccCccc
Q psy5836          58 CPEGYFE   64 (66)
Q Consensus        58 Cp~g~y~   64 (66)
                      |+.|||.
T Consensus        85 C~~G~~~   91 (177)
T 3qd6_R           85 CEEGWHC   91 (177)
T ss_dssp             ECTTEEE
T ss_pred             cCCCcEE
Confidence            7777764

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=85.13  E-value=0.68  Score=30.73  Aligned_cols=9  Identities=22%  Similarity=0.693  Sum_probs=6.4

Q ss_pred             cCCCCeeeC
Q psy5836           7 RCPPRSFPN   15 (66)
Q Consensus         7 ~C~~g~y~~   15 (66)
                      .|+.|||.+
T Consensus       188 ~C~~g~~G~  196 (423)
T 2gy5_A          188 RCEAQKWGP  196 (423)
T ss_dssp             SSCTTEEST
T ss_pred             cCCCCCCCC
Confidence            577888764

>1eai_C Protein (chymotrypsin/elastase isoinhibitor 1); serine proteinase, ascaris SUMM, protein inhibitor; 2.40A {Ascaris suum} SCOP: g.22.1.1

Probab=85.00  E-value=0.94  Score=22.29  Aligned_cols=45  Identities=24%  Similarity=0.591  Sum_probs=24.5

Q ss_pred             ccCCCCeeeCCccccccCccccccCCCCC----cccccc----cCCCc-ccccccccccc
Q psy5836           6 SRCPPRSFPNQGGVCWPCHESCETCAGAG----QDSCLT----CAPAH-LRVTDLAICLQ   56 (66)
Q Consensus         6 ~~C~~g~y~~~~~~C~~C~~~C~~C~g~~----~~~C~~----C~~~~-~~~~~~~~Cv~   56 (66)
                      ..||.+..+   ..|..|..+|..   +.    ...|+.    |..|+ |++...+.||.
T Consensus         3 ~~C~~ne~y---~~Cg~C~~tC~~---~~~~~C~~~C~~~GC~C~~G~g~vr~~~g~CV~   56 (61)
T 1eai_C            3 ESCGPNEVW---TECTGCEMKCGP---DENTPCPLMCRRPSCECSPGRGMRRTNDGKCIP   56 (61)
T ss_dssp             TTCCTTCEE---ESSBCCCCBSSC---CTTCEEESSCBCCEEECCGGGTEEECTTSCEEE
T ss_pred             CcCCCCCEe---CcCCCCCCccCc---CCCCCCcCccCCCCCCCCCCCcEEECCCCCEec
Confidence            357765433   234456555543   32    235766    77764 44435688885

>2p3f_N Anti-coagulant protein 5; factor XA, hydrolase; 3.10A {Ancylostoma caninum}

Probab=83.68  E-value=2.3  Score=21.86  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=14.3

Q ss_pred             cCCCcccccccccccc--ccccC
Q psy5836          41 CAPAHLRVTDLAICLQ--QCPEG   61 (66)
Q Consensus        41 C~~~~~~~~~~~~Cv~--~Cp~g   61 (66)
                      |..||++..+.+.||.  .||.+
T Consensus        51 C~~G~vr~~~~g~CV~~~~Cp~~   73 (78)
T 2p3f_N           51 CKDGFYRDTVIGDCVREEECDQH   73 (78)
T ss_dssp             ECSSCEEETTTTEEECGGGCCCC
T ss_pred             cCCCEeEcCCCCceECHHHCCCC
Confidence            6788877543389996  57653

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=83.20  E-value=0.86  Score=30.38  Aligned_cols=25  Identities=28%  Similarity=0.713  Sum_probs=15.0

Q ss_pred             ccccccCCCccccccccccccccccCcccC
Q psy5836          36 DSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus        36 ~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ..|+.|..+..    +..|- .|.+|||.+
T Consensus       357 G~C~~C~~nt~----G~~CE-rC~~GYyg~  381 (403)
T 2y38_A          357 GVCLDCQHHTT----GINCE-RCLPGFFRA  381 (403)
T ss_dssp             EEESSCCSSEE----STTSC-EECTTCEEC
T ss_pred             CCCCCCcCcCc----CCCCC-cCCCCccCC
Confidence            36666664432    34454 688888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1m6ba4	101	Receptor protein-tyrosine kinase Erbb-3 Cys-rich d	99.49
d1n8yc4	120	Protooncoprotein Her2 extracellular domain {Rat (R	99.47
d1nqla4	134	EGF receptor Cys-rich domains {Human (Homo sapiens	99.24
d2dtge6	155	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.88
d1igra3	150	Type 1 insulin-like growth factor receptor Cys-ric	98.81
d1s78a4	76	Protooncoprotein Her2 extracellular domain {Human	98.78
d1m6ba3	145	Receptor protein-tyrosine kinase Erbb-3 Cys-rich d	98.75
d1s78a4	76	Protooncoprotein Her2 extracellular domain {Human	98.74
d1igra3	150	Type 1 insulin-like growth factor receptor Cys-ric	98.51
d1nqla4	134	EGF receptor Cys-rich domains {Human (Homo sapiens	98.51
d1moxa3	149	EGF receptor Cys-rich domains {Human (Homo sapiens	98.41
d1moxa3	149	EGF receptor Cys-rich domains {Human (Homo sapiens	98.35
d1n8yc4	120	Protooncoprotein Her2 extracellular domain {Rat (R	98.3
d1m6ba4	101	Receptor protein-tyrosine kinase Erbb-3 Cys-rich d	98.29
d1m6ba3	145	Receptor protein-tyrosine kinase Erbb-3 Cys-rich d	98.29
d2dtge6	155	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.25
d1n8yc3	157	Protooncoprotein Her2 extracellular domain {Rat (R	97.41
d1n8yc3	157	Protooncoprotein Her2 extracellular domain {Rat (R	97.33
d3b2ua2	26	EGF receptor Cys-rich domains {Human (Homo sapiens	96.49
d1jmab1	56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	94.47
d1exta1	59	Tumor necrosis factor (TNF) receptor {Human (Homo	93.94
d1sg1x3	42	Low affinity neurotrophin receptor p75NTR {Rat (Ra	92.27
d2heyr3	54	Tumor necrosis factor receptor superfamily member	91.58
d1ccva_	56	Chymotrypsin inhibitor AMCI {Honeybee (Apis mellif	89.74
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	85.61

>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=79.38  Aligned_cols=60  Identities=40%  Similarity=1.041  Sum_probs=48.5

Q ss_pred             CcccccCCC-----CeeeCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcccCC
Q psy5836           2 STCVSRCPP-----RSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFESK   66 (66)
Q Consensus         2 ~~Cv~~C~~-----g~y~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~~   66 (66)
                      ++||.+|+.     ++|. .+++|++||++|+      +|+|+++++|++|+  ++++  .++||..||+|||.+.
T Consensus        29 ~~Cv~~C~~~~~~~~~~~-~~~~C~~C~~~C~~c~~~~tC~G~~~~~C~~C~--~~~~--~~~Cv~~CP~G~y~~~   99 (101)
T d1m6ba4          29 GVCVTHCNFLNGEPREFA-HEAECFSCHPECQPMEGTATCNGSGSDTCAQCA--HFRD--GPHCVSSCPHGVLGAK   99 (101)
T ss_dssp             SCEESCCSSSCSSSCEEE-ETTEEEECCTTBCCCTTSCSBSSSSSTTBSSBS--SEEE--TTEEESSCCSSCCBTT
T ss_pred             CEeCCCcccCCCCccccC-CCCccCCCCHHHccccCCCccCCCCcccCcCch--hccc--CccccCcCcCCCCCCC
Confidence            579999952     2333 3689999999994      89999999999997  4543  5899999999999863

>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1e-14  Score=81.58  Aligned_cols=60  Identities=35%  Similarity=0.855  Sum_probs=48.7

Q ss_pred             CcccccCCCCeee----CCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFP----NQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~----~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||++||.+++.    ..+++|++||++|.      +|+||++++|++|+  +++  ..++||..||+|||.+
T Consensus        29 ~~Cv~~C~~~~~~~~~~~~~~~C~~C~~~C~~~~~~~tC~Gp~~~~C~~C~--~~~--~~~~Cv~~CP~g~~~~   98 (120)
T d1n8yc4          29 QECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACA--HYK--DSSSCVARCPSGVKPD   98 (120)
T ss_dssp             TEEESCCSSSSSSSCEECSSSBCEECCTTBCCCSSSCSBSSSSGGGBSSBS--SEE--ETTEEESSCCEEECCT
T ss_pred             CcccccCCCccCCCcccCCCCeECCcChhhcCcCCCCcccCCCCCcCCccc--ccC--cCCeecCcCCCCCccc
Confidence            5799999864322    23689999999996      79999999999997  343  3689999999999875

>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-12  Score=72.54  Aligned_cols=60  Identities=33%  Similarity=0.804  Sum_probs=48.6

Q ss_pred             CcccccCCCCee----eCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSF----PNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y----~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||..||..++    ....++|++||++|.      +|+|+++.+|++|.  ++++  .+.||..||+|||.+
T Consensus        29 ~~Cv~~C~~~~~~~~~~~~~~~C~~C~~~C~~c~~~~tC~g~~~~~C~~C~--~~~~--~~~Cv~~Cp~g~~~~   98 (134)
T d1nqla4          29 RECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCA--HYID--GPHCVKTCPAGVMGE   98 (134)
T ss_dssp             TEEESCCSSSSCSSCEEESSSBEEECCTTBCCCTTSCCBSSSSTTCBSSBS--SEEE--TTEEESSCCEEEECS
T ss_pred             CcccccCCcCccccccccCCCeECCCChhhcccccCcccccCCCccccccc--cccC--CCeecCcCCCCcccc
Confidence            568999986432    124789999999996      89999999999997  3443  589999999999875

>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4e-10  Score=63.52  Aligned_cols=61  Identities=23%  Similarity=0.458  Sum_probs=49.6

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|+..||.|+|.+....+ .++..|.++.+.....|+.|..++++.  .++||..||+|||.+
T Consensus        79 ~~C~~~Cp~g~y~~~~~~c-~~~~~C~~~~~~~~~~c~~c~~~~~~~--~~~Cv~~Cp~g~~~~  139 (155)
T d2dtge6          79 GRCVETCPPPYYHFQDWRC-VNFSFCQDLHHKCKNSRRQGCHQYVIH--NNKCIPECPSGYTMN  139 (155)
T ss_dssp             TBCCSSCCSSCCCCTTSBC-CCHHHHHHHSSCCCSTTTTSCCCCEEE--TTEEESSCCSSCEEC
T ss_pred             CEEccccCCCeeecCCccc-ccCCcccccCCCCCCcccccCCCCEee--CCeEcccCCCCCEeC
Confidence            5799999999998765554 466778888887788899998877664  689999999999975

>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Type 1 insulin-like growth factor receptor Cys-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.9e-10  Score=62.22  Aligned_cols=57  Identities=23%  Similarity=0.596  Sum_probs=46.7

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|+..||.|+|.+....|. +...|.++.+    .|..|..++++.  .++||..||+|||.+
T Consensus        79 ~~C~~~Cp~g~y~~~~~~c~-~~~~C~~c~~----~c~~c~~~~~~~--~~~C~~~Cp~g~~~~  135 (150)
T d1igra3          79 GVCVPACPPNTYRFEGWRCV-DRDFCANILS----AESSDSEGFVIH--DGECMQECPSGFIRN  135 (150)
T ss_dssp             SSEESSCCTTCEEETTTEEE-CHHHHHTSST----TSCCCSCCCEEE--TTEEESSCCTTEEES
T ss_pred             CeeccCCCCceecccccccc-CCCcccccCC----ccccCcceeeeE--CCEEcccCCCCeEec
Confidence            57999999999987776665 5677888765    477899888775  689999999999975

>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2e-09  Score=55.50  Aligned_cols=36  Identities=28%  Similarity=0.794  Sum_probs=30.8

Q ss_pred             Ccccccc--CCCCCcccccccCCCccccccccccccccccCc
Q psy5836          23 CHESCET--CAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY   62 (66)
Q Consensus        23 C~~~C~~--C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~   62 (66)
                      ||++|.+  |+||++++|++|+.  +++  .++||..||.+.
T Consensus         1 C~~~C~~~gC~Gp~~~~C~~C~~--~~~--~~~Cv~~C~~~~   38 (76)
T d1s78a4           1 CHQLCARGHCWGPGPTQCVNCSQ--FLR--GQECVEECRVLQ   38 (76)
T ss_dssp             CCTTBGGGCBSSSSTTSBSSBSS--EEE--TTEEESSCSSSS
T ss_pred             CchhhccCcCCCcChhhChhccc--hhh--CCcccccCCCCC
Confidence            7999988  99999999999984  443  589999999764

>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.6e-09  Score=57.87  Aligned_cols=58  Identities=22%  Similarity=0.685  Sum_probs=46.0

Q ss_pred             CcccccCCCCeeeCCccccccCcccccc-CCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCET-CAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~-C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|+..|+.++|.+.  .+..||..|.+ +.++....|++|..+++    .++||..||.|||.+
T Consensus        24 ~~C~~~C~~~~~~~~--~~~~C~~~C~~~~~~~~~~~C~~C~~~~~----~~~C~~~C~~g~~~~   82 (145)
T d1m6ba3          24 TICAPQCNGHCFGPN--PNQCCHDECAGGCSGPQDTDCFACRHFND----SGACVPRCPQPLVYN   82 (145)
T ss_dssp             CCCCTTSSSCBSSSS--TTCBCCTTBSSCBSSSSGGGBSSBSSEEE----TTEEESSCSCSEEEC
T ss_pred             CccCCcCCCCcccCC--CCCcCCCccccccCCCCCCeeeccccccc----CCcccCCCCceEecC
Confidence            458888999999764  34569999975 47888899999984332    589999999999975

>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.2e-09  Score=55.33  Aligned_cols=39  Identities=33%  Similarity=0.821  Sum_probs=32.2

Q ss_pred             CcccccCCCCeee----CCccccccCccccc------cCCCCCcccccc
Q psy5836           2 STCVSRCPPRSFP----NQGGVCWPCHESCE------TCAGAGQDSCLT   40 (66)
Q Consensus         2 ~~Cv~~C~~g~y~----~~~~~C~~C~~~C~------~C~g~~~~~C~~   40 (66)
                      ++||.+||.+.+.    ...++|++||++|+      +|+||++++|+|
T Consensus        28 ~~Cv~~C~~~~~~~~~~~~~~~C~~C~~~C~~~~~~~tC~Gp~~~~C~s   76 (76)
T d1s78a4          28 QECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGPEADQCVA   76 (76)
T ss_dssp             TEEESSCSSSSCSSCEEESSSCEEECCTTSCCCTTSCCBSSSSGGGBCC
T ss_pred             CcccccCCCCCCcCccCCCCCeehhhChhhcCCCCCCccCCcCcccCcC
Confidence            6799999976432    23689999999996      799999999986

>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Type 1 insulin-like growth factor receptor Cys-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-08  Score=56.64  Aligned_cols=60  Identities=20%  Similarity=0.602  Sum_probs=45.9

Q ss_pred             CcccccCCCCeeeCC-ccccccCccccc-cCCCCC-cccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQ-GGVCWPCHESCE-TCAGAG-QDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~-~~~C~~C~~~C~-~C~g~~-~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|+..||.+++.+. ...++.||+.|. +|.++. ...|++|..  +++  .++||..||.|+|.+
T Consensus        30 ~~C~~~C~~~c~~~~~~~~~~cC~~~C~~~C~~~~~~~~c~~C~~--~~~--~~~C~~~Cp~g~y~~   92 (150)
T d1igra3          30 NRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRH--YYY--AGVCVPACPPNTYRF   92 (150)
T ss_dssp             SCBCCCCCGGGTTSCBCTTSCBCCTTEEEEESSTTCTTSEEEESS--EEC--SSSEESSCCTTCEEE
T ss_pred             CcccCccCCCCCCCccCCCCCCcCCccCCCCCCCCCccccccCCC--ccc--CCeeccCCCCceecc
Confidence            457778888877654 556667999996 899987 468899973  333  589999999999874

>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.2e-08  Score=55.63  Aligned_cols=39  Identities=38%  Similarity=0.985  Sum_probs=33.3

Q ss_pred             CcccccCCCCeeeCC----------ccccccCcccc-ccCCCCCcccccc
Q psy5836           2 STCVSRCPPRSFPNQ----------GGVCWPCHESC-ETCAGAGQDSCLT   40 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~----------~~~C~~C~~~C-~~C~g~~~~~C~~   40 (66)
                      +.||.+||.|||.+.          +++|++||.+| .+|+||+.++|++
T Consensus        85 ~~Cv~~Cp~g~~~~~~~~~~~~~~~~~~C~~C~~~C~~~C~gp~~~~C~t  134 (134)
T d1nqla4          85 PHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLEGCPT  134 (134)
T ss_dssp             TEEESSCCEEEECSSSSEEEEEECTTCBEEECCTTCSSCCSSSSTTTSCC
T ss_pred             CeecCcCCCCccccccccceeecCCCCeEcccCcccccccCCcCcccCCC
Confidence            479999999998642          46899999999 6799999999875

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.6e-08  Score=53.47  Aligned_cols=57  Identities=26%  Similarity=0.623  Sum_probs=44.2

Q ss_pred             cccccCCCCeeeCCccccccCccccccC-CCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCETC-AGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~~C-~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      +|+..|+.++|.+  ..+..|+..|.++ .++....|++|.  .+++  .++||..||+|||.+
T Consensus        28 ~c~~~C~~~~~~~--~~~~~C~~~C~~c~~~~~~~~C~~C~--~~~~--~~~C~~~C~~g~~~~   85 (149)
T d1moxa3          28 ICAQQCSGRCRGK--SPSDCCHNQCAAGCTGPRESDCLVCR--KFRD--EATCKDTCPPLMLYN   85 (149)
T ss_dssp             SCCTTCSSCBSSS--STTSBCCTTEEEEESSSSSTTEEEES--SEEE--TTEEESSCCCSEEEE
T ss_pred             ccCCcCCccccCC--CCCccccccccccCcCCCCCcCcCCC--cccc--cCceeccCCCCeEec
Confidence            5677788887764  4556799999775 778888999997  3443  589999999999865

>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: EGF receptor Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.7e-08  Score=52.47  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=40.1

Q ss_pred             CcccccCCCCeeeCC-ccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQ-GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~-~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++||..||.|||.+. ...|..++..+. +.  ...-+..|..++++ ...++||..||+|||.+
T Consensus        72 ~~C~~~C~~g~~~~~~~~~c~~~~~~~~-~~--~~~c~~~c~~~~~~-~~~~~C~~~C~~g~~~~  132 (149)
T d1moxa3          72 ATCKDTCPPLMLYNPTTYQMDVNPEGKY-SF--GATCVKKCPRNYVV-TDHGSCVRACGADSYEM  132 (149)
T ss_dssp             TEEESSCCCSEEEETTTTEEEECTTCCE-EE--TTEEESSCCTTCEE-CTTSBEESSCCSSCCCB
T ss_pred             CceeccCCCCeEecCCCceecccCCccc-CC--CCCcccccCCCeEe-CCCCcEeCCCCCCCEee
Confidence            468999999999865 445554443332 22  23345567766654 35789999999999864

>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=1.8e-07  Score=51.38  Aligned_cols=35  Identities=26%  Similarity=0.767  Sum_probs=29.6

Q ss_pred             Ccccccc--CCCCCcccccccCCCccccccccccccccccC
Q psy5836          23 CHESCET--CAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG   61 (66)
Q Consensus        23 C~~~C~~--C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g   61 (66)
                      ||++|.+  |.||++++|++|+.  +++  .++||..||.+
T Consensus         2 C~~~C~~~gC~Gp~~~~C~~C~~--~~~--~~~Cv~~C~~~   38 (120)
T d1n8yc4           2 CNSLCAHGHCWGPGPTQCVNCSH--FLR--GQECVEECRVW   38 (120)
T ss_dssp             CCTTBGGGCBSSSSTTCBSSBSS--EEE--TTEEESCCSSS
T ss_pred             cCccccCCCccCcCchhCccccc--hhh--CCcccccCCCc
Confidence            8999987  99999999999983  443  58999999865

>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.6e-07  Score=50.35  Aligned_cols=33  Identities=30%  Similarity=0.961  Sum_probs=28.3

Q ss_pred             Ccccccc--CCCCCcccccccCCCccccccccccccccc
Q psy5836          23 CHESCET--CAGAGQDSCLTCAPAHLRVTDLAICLQQCP   59 (66)
Q Consensus        23 C~~~C~~--C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp   59 (66)
                      ||++|.+  |+|+++++|++|+  .+++  +++||..|+
T Consensus         2 C~~~C~t~gC~G~~~~~C~~C~--~~~~--~~~Cv~~C~   36 (101)
T d1m6ba4           2 CDPLCSSGGCWGPGPGQCLSCR--NYSR--GGVCVTHCN   36 (101)
T ss_dssp             CCTTBCTTCBSSSSGGGBSSBS--SEES--SSCEESCCS
T ss_pred             cCccccCCcccCcChhhchhhh--Chhh--CCEeCCCcc
Confidence            8999987  9999999999997  3443  589999995

>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-07  Score=52.00  Aligned_cols=60  Identities=18%  Similarity=0.318  Sum_probs=44.3

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|+..||.|+|.+. ..++.|...+..+... ...++.|..++++.  .++||..||.|||.+
T Consensus        69 ~~C~~~C~~g~~~~~-~~~~cc~~~~~~~~~~-~~c~~~c~~~~~~~--~~~C~~~Cp~g~~~~  128 (145)
T d1m6ba3          69 GACVPRCPQPLVYNK-LTFQLEPNPHTKYQYG-GVCVASCPHNFVVD--QTSCVRACPPDKMEV  128 (145)
T ss_dssp             TEEESSCSCSEEECT-TTSSEEECTTCCEEET-TEEESSCCSSCEEE--TTEEESSCCTTEEEE
T ss_pred             CcccCCCCceEecCC-CeeecCCCCCCccCCC-CcccccccCCeECc--CCeEeCCCCCCeeee
Confidence            578999999999864 4555566666666553 35677788776654  689999999999864

>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.9e-07  Score=50.78  Aligned_cols=60  Identities=23%  Similarity=0.652  Sum_probs=42.4

Q ss_pred             CcccccCCCCeeeCC-ccccccCccccc-cCCCCC-cccccccCCCccccccccccccccccCcccC
Q psy5836           2 STCVSRCPPRSFPNQ-GGVCWPCHESCE-TCAGAG-QDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~-~~~C~~C~~~C~-~C~g~~-~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      ++|...||.+.+... ...++.||++|. .|.++. ...|++|..  +++  .++||..||.|||.+
T Consensus        30 ~~C~~~C~~~c~~~~~~~~~~cC~~~C~~~C~~~~~~~~C~~c~~--~~~--~~~C~~~Cp~g~y~~   92 (155)
T d2dtge6          30 SHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN--FYL--DGRCVETCPPPYYHF   92 (155)
T ss_dssp             SCBCCCCCTTTGGGCBCSSSCBCCTTCCSEESSSSCGGGEECCSS--CBB--TTBCCSSCCSSCCCC
T ss_pred             CcccCcCCCCCCCCccCCCCCccChhhCcccccCCCCcccccccc--eeE--CCEEccccCCCeeec
Confidence            357777888765533 455666999995 577764 467888863  332  589999999999865

>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=8.4e-05  Score=39.91  Aligned_cols=56  Identities=29%  Similarity=0.595  Sum_probs=38.4

Q ss_pred             cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836           3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES   65 (66)
Q Consensus         3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~   65 (66)
                      +|+..|..+++.   ..+..||..|. .+.|+....|+.|..  ++  ..+.|+..||.+||.+
T Consensus        33 ~C~~~c~~~~~~---~~~~~c~~~C~~~~~~~~~~~C~~c~~--~~--~~~~C~~~C~~~~~~~   89 (157)
T d1n8yc3          33 ICTSGCARCKGR---LPTDCCHEQCAAGCTGPKHSDCLACLH--FN--HSGICELHCPALVTYN   89 (157)
T ss_dssp             TCCTTCSCBSSS---SGGGBCCTTBSSCBSSSSTTSBSSBSS--EE--ETTEEESSCCCSEEC-
T ss_pred             cccCccccCCCC---CcccccccccccccCCCCCcccccccc--cc--ccCceeeccCCCeEec
Confidence            455555555443   45666899885 467777788888863  33  2578999999999875

>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Growth factor receptor domain
family: Growth factor receptor domain
domain: Protooncoprotein Her2 extracellular domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=3.2e-05  Score=41.68  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=36.1

Q ss_pred             CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836           2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE   64 (66)
Q Consensus         2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~   64 (66)
                      .+|+..||.++|.+. ..+..++..+..+.. +...+..|.. .++....+.|+..||.++|.
T Consensus        76 ~~C~~~C~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~c~~-~~~~~~~~~C~~~C~~~~~~  135 (157)
T d1n8yc3          76 GICELHCPALVTYNT-DTFESMHNPEGRYTF-GASCVTTCPY-NYLSTEVGSCTLVCPPNNQE  135 (157)
T ss_dssp             TEEESSCCCSEEC------CCEECTTCCEEE-TTEEESSCCT-TCEECTTSBEESSCCTTEEE
T ss_pred             CceeeccCCCeEecC-CeeEeCCCCcccccC-CCCccccccc-CceecCCCcccccCCCCCCc
Confidence            468889999999864 344455555543332 2333444444 44445678999999999885

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.015  Score=27.37  Aligned_cols=41  Identities=22%  Similarity=0.596  Sum_probs=20.9

Q ss_pred             CCCCeeeCCccccccCcccc---ccCCCCCcccccccCCCcccc
Q psy5836           8 CPPRSFPNQGGVCWPCHESC---ETCAGAGQDSCLTCAPAHLRV   48 (66)
Q Consensus         8 C~~g~y~~~~~~C~~C~~~C---~~C~g~~~~~C~~C~~~~~~~   48 (66)
                      |++|+|...+.-|..|.+.=   ..|.......|..|..+.|+.
T Consensus         1 C~~geY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~   44 (56)
T d1jmab1           1 CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIA   44 (56)
T ss_dssp             CCTTBCCBTTBCCBCBCTTEEEEECCCSSSCCEEEECCTTEECS
T ss_pred             CCCCcEeCCCeEcCCCCCCceEcccCCCCCCCeeccCcCCCccC
Confidence            45666653333444444332   234444456777777776543

>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Tumor necrosis factor (TNF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.027  Score=26.73  Aligned_cols=43  Identities=26%  Similarity=0.733  Sum_probs=27.0

Q ss_pred             ccCCCCeeeCC---ccccccCcccc---ccCCCCC-cccccccCCCcccc
Q psy5836           6 SRCPPRSFPNQ---GGVCWPCHESC---ETCAGAG-QDSCLTCAPAHLRV   48 (66)
Q Consensus         6 ~~C~~g~y~~~---~~~C~~C~~~C---~~C~g~~-~~~C~~C~~~~~~~   48 (66)
                      +.||.|.|...   ..-|..|.+.=   +.|.++. ...|..|..+.|+.
T Consensus         1 s~C~~g~Y~~~~~~~~cC~~CppG~~~~~~Ct~~~~~t~C~pC~~gtyt~   50 (59)
T d1exta1           1 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTA   50 (59)
T ss_dssp             CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTEECC
T ss_pred             CCCCCccccccCCCCcCCCCCCCCCeecCccCCCCCCCEeccCCCCCccC
Confidence            46899988632   23466666554   3666653 46777777776653

>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.27  E-value=0.033  Score=24.95  Aligned_cols=13  Identities=38%  Similarity=1.211  Sum_probs=6.6

Q ss_pred             cccccccccCcccC
Q psy5836          52 AICLQQCPEGYFES   65 (66)
Q Consensus        52 ~~Cv~~Cp~g~y~~   65 (66)
                      -.|. .||+|+|.|
T Consensus        21 T~C~-~C~~GtFSd   33 (42)
T d1sg1x3          21 TVCE-ECPEGTYSD   33 (42)
T ss_dssp             CEEE-ECCTTEECC
T ss_pred             ceee-ECcCCcccC
Confidence            3444 455555554

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Tumor necrosis factor receptor superfamily member 4, OX40L receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.061  Score=25.07  Aligned_cols=41  Identities=20%  Similarity=0.690  Sum_probs=21.1

Q ss_pred             cCCCCeeeCCccccccCcccc---ccCCCCCcccccccCCCccc
Q psy5836           7 RCPPRSFPNQGGVCWPCHESC---ETCAGAGQDSCLTCAPAHLR   47 (66)
Q Consensus         7 ~C~~g~y~~~~~~C~~C~~~C---~~C~g~~~~~C~~C~~~~~~   47 (66)
                      .|+.+.|...+.-|..|.+.=   ..|+......|..|..+.|.
T Consensus         2 ~C~~~eY~~~g~CC~~C~pG~~~~~~Cs~~~~t~C~pC~~gtyt   45 (54)
T d2heyr3           2 HCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYN   45 (54)
T ss_dssp             CBCSSEEEETTEEEECBCTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred             cCCcCcCcCCCeECCCCCCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence            466777764343344443332   23444445566666666554

>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis mellifera) [TaxId: 7460]}

class: Small proteins
fold: Serine protease inhibitors
superfamily: Serine protease inhibitors
family: ATI-like
domain: Chymotrypsin inhibitor AMCI
species: Honeybee (Apis mellifera) [TaxId: 7460]

Probab=89.74  E-value=0.2  Score=23.24  Aligned_cols=8  Identities=25%  Similarity=0.613  Sum_probs=4.8

Q ss_pred             cCCCCeee
Q psy5836           7 RCPPRSFP   14 (66)
Q Consensus         7 ~C~~g~y~   14 (66)
                      +||.+..+
T Consensus         2 ~C~~~~~y    9 (56)
T d1ccva_           2 ECGPNEVF    9 (56)
T ss_dssp             CCCTTEEE
T ss_pred             cCcCcCEe
Confidence            57766544

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.61  E-value=0.13  Score=21.74  Aligned_cols=14  Identities=29%  Similarity=0.807  Sum_probs=11.3

Q ss_pred             cCCCCeeeCCcccc
Q psy5836           7 RCPPRSFPNQGGVC   20 (66)
Q Consensus         7 ~C~~g~y~~~~~~C   20 (66)
                      +||+||..+.+.+|
T Consensus        21 ~CPeGyIldeg~~c   34 (35)
T d1dx5i2          21 ECPEGYILDDGFIC   34 (35)
T ss_dssp             ECCTTEEEETTTEE
T ss_pred             cCCCceEecccccc
Confidence            68999998877666