Psyllid ID: psy583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKITLKSPSSSTSSKSVTPPSSSVNIPLNN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccHccccccccccccccccc
Coil and Loop (DISEMBL)
MAEMSALKAKLKEQNQRLITLNHEKAKLEartkanpgahadeqEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEkrninsglqLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNnglntgsdmALLSSKAYKRVLLKSAMkviddrptipedtsykitlkspssstssksvtppsssvniplnn
Flexible Loop (DISEMBL)
MAEMSALKAKLKEQNQRLITLNHEKAKLEARTkanpgahadeqeqtNLLISKKQLALKTLREKIQDLesqlstkekdlevnnsnldDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSamkviddrptipedtsykitlkspssstssksvtppsssvniplnn
Low Complexity Region (SEG)
MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKITLkspssstssksvtppsssvNIPLNN
Disordered region (IsUnstruct)
****************************************************************************************************KLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVI*****************************************
Disordered Region (DISOPRED)
**************************************************SKKQLALKT*****************************KKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLI************************************QEITEMVKLLTNAINLRG******************************L*DHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDD*PTIPEDTSYKITLK*****************VN*****
Disordered Region (DISEMBL)
**********LKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKIT**************************
Disordered Region (DISPRO)
****SALKAKLKEQNQRLITLNHEKAKLEARTKAN****ADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKITLKSPSS********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKANPGAHADEQEQTNLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKITLKSPSSSTSSKSVTPPSSSVNIPLNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q56R14	1091	E3 ubiquitin-protein liga	N/A	N/A	0.440	0.118	0.302	6e-06
Q9UPN9	1127	E3 ubiquitin-protein liga	yes	N/A	0.440	0.114	0.302	7e-06
Q99PP7	1142	E3 ubiquitin-protein liga	yes	N/A	0.440	0.112	0.302	7e-06
Q6E2N3	1163	E3 ubiquitin-protein liga	yes	N/A	0.460	0.116	0.258	0.0003

>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%)

Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
           K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct: 289 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 348

Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
           L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct: 349 LLQQLESVTKERQIKLVQQQNDITGLSRQIKHVMTFTNWAIASGSSTALLYSKRLITFQL 408

Query: 246 KSAMKVIDD 254
           +  +K   D
Sbjct: 409 RHILKARCD 417

Acts as an E3 ubiquitin-protein ligase for smad4. Promotes ectoderm embryonic development at the expense of other germ layers. Inhibits mesodermal differentiation. Promotes neural development of the ectoderm. Promotes smad4 alpha degradation via the ubiquitin proteasome pathway. May act as a transcriptional repressor.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=3

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%)

Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
           K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct: 320 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 379

Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
           L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct: 380 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 439

Query: 246 KSAMKVIDD 254
           +  +K   D
Sbjct: 440 RHILKARCD 448

Acts as an E3 ubiquitin-protein ligase. Promotes SMAD4 ubiquitination, nuclear exclusion and degradation via the ubiquitin proteasome pathway. According to PubMed:16751102, does not promote a decrease in the level of endogenous SMAD4. May act as a transcriptional repressor. Inhibits the transcriptional response to TGF-beta/BMP signaling cascade. Plays a role in the control of cell proliferation. Its association with SMAD2 and SMAD3 stimulates erythroid differentiation of hematopoietic stem/progenitor (By similarity). Monoubiquitinates SMAD4 and acts as an inhibitor of SMAD4-dependent TGF-beta/BMP signaling cascade (Monoubiquitination of SMAD4 hampers its ability to form a stable complex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%)

Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
           K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct: 336 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 395

Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
           L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct: 396 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 455

Query: 246 KSAMKVIDD 254
           +  +K   D
Sbjct: 456 RHILKARCD 464

Acts as an E3 ubiquitin-protein ligase. Promotes SMAD4 ubiquitination, nuclear exclusion and degradation via the ubiquitin proteasome pathway (By similarity). May act as a transcriptional repressor (By similarity). Inhibits the transcriptional response to TGF-beta/BMP signaling cascade (By similarity). Plays a role in the control of cell proliferation (By similarity). Its association with SMAD2 and SMAD3 stimulates erythroid differentiation of hematopoietic stem/progenitor. Monoubiquitinates SMAD4 and acts as an inhibitor of SMAD4-dependent TGF-beta/BMP signaling cascade (Monoubiquitination of SMAD4 hampers its ability to form a stable complex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTN 177
           LD+     K +I   ++++  KR L++ +   +  R   ++E  K++  EI   V  L N
Sbjct: 316 LDEACQNQKGIIATFMTKLQEKRGLVEYSASEVQKRLKEVAETHKKVEHEIKIAVFTLIN 375

Query: 178 AINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSS 237
            IN +GK L  +L  +   +   L  ++  +  L++   H + F N  +  GS  ALL S
Sbjct: 376 EINKKGKSLLQQLESVTKDRSMKLLSQQRDISVLAQQIIHVLNFTNWAITNGSSTALLYS 435

Query: 238 K---AYK-RVLLKSAMKVI 252
           K    Y+ R+++K+ +  +
Sbjct: 436 KRLITYQLRLIMKARVDAV 454

May act as an E3 ubiquitin-protein ligase and a transcriptional repressor (By similarity). Involved in the regulation of embryonic and adult hematopoiesis. Required for normal development and survival of both committed erythroid progenitor cells and posterior mesenchymal cells.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
242024147	1049	conserved hypothetical protein [Pediculu	0.354	0.099	0.743	3e-40
380020007	1046	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.436	0.122	0.653	1e-38
350414692	1036	PREDICTED: E3 ubiquitin-protein ligase T	0.392	0.111	0.709	4e-38
340715100	1036	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.392	0.111	0.709	4e-38
383860809	1061	PREDICTED: LOW QUALITY PROTEIN: transcri	0.440	0.121	0.656	5e-38
307205723	1101	E3 ubiquitin-protein ligase TRIM33 [Harp	0.470	0.125	0.615	3e-37
270005635	980	hypothetical protein TcasGA2_TC007718 [T	0.399	0.119	0.666	2e-36
189236075	2981	PREDICTED: similar to Dual specificity t	0.399	0.039	0.666	2e-36
156554524	1085	PREDICTED: transcription intermediary fa	0.399	0.107	0.666	2e-36
307180087	1078	E3 ubiquitin-protein ligase TRIM33 [Camp	0.399	0.108	0.692	4e-36

>gi|242024147|ref|XP_002432491.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517929|gb|EEB19753.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 97/117 (82%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A+ET+ +I GLLSEVSYKRVLLKSAMKVIDDR+NLI++KKK L +EIT+MV  LTN IN 
Sbjct: 245 ASETRSIISGLLSEVSYKRVLLKSAMKVIDDRKNLIADKKKILVKEITQMVVRLTNTINA 304

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL   LNE+CD KQKTL EKK  LEQLS LTDHCI+FVNN LN GSD ALL SK
Sbjct: 305 RGKQLVLGLNEVCDVKQKTLCEKKEALEQLSLLTDHCIDFVNNALNKGSDKALLYSK 361

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020007|ref|XP_003693890.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM33-like [Apis florea]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 98/130 (75%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A ET+  +  LL EVSYKRVLLKSAMKVI+DRQ LI EKKK L Q+IT+MV  LTN IN 
Sbjct: 265 AAETRASVSTLLKEVSYKRVLLKSAMKVIEDRQVLILEKKKNLVQDITQMVVQLTNTINT 324

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYK 241
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI+FV + L  GSDM LL SK Y 
Sbjct: 325 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCIQFVTHALKKGSDMELLYSKKYV 384

Query: 242 RVLLKSAMKV 251
            VL  +  K+
Sbjct: 385 XVLCVNLTKI 394

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414692|ref|XP_003490389.1| PREDICTED: E3 ubiquitin-protein ligase TRIM33-like [Bombus impatiens]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 94/117 (80%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           ATET+  +  LL EVSYKRVLLKSAMKVI+DRQ LI EKKK L Q+IT+MV  LTNAIN 
Sbjct: 266 ATETRASVSTLLKEVSYKRVLLKSAMKVIEDRQVLILEKKKNLVQDITQMVVQLTNAINT 325

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI+FV + L  GSDM LL SK
Sbjct: 326 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCIQFVTHALKKGSDMELLYSK 382

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715100|ref|XP_003396058.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase TRIM33-like [Bombus terrestris]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 94/117 (80%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           ATET+  +  LL EVSYKRVLLKSAMKVI+DRQ LI EKKK L Q+IT+MV  LTNAIN 
Sbjct: 266 ATETRASVSTLLKEVSYKRVLLKSAMKVIEDRQVLILEKKKNLVQDITQMVVQLTNAINT 325

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI+FV + L  GSDM LL SK
Sbjct: 326 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCIQFVTHALKKGSDMELLYSK 382

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860809|ref|XP_003705881.1| PREDICTED: LOW QUALITY PROTEIN: transcription intermediary factor 1-alpha-like [Megachile rotundata]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 99/131 (75%), Gaps = 2/131 (1%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A ET+  +  LL EVSYKRVLLKSAMKVI+DRQ LI EKKK L Q+IT+MV  LTNAIN 
Sbjct: 266 AAETRTSVLTLLKEVSYKRVLLKSAMKVIEDRQGLILEKKKSLVQDITQMVVQLTNAINT 325

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYK 241
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI+FV + L  GSDM LL SK  K
Sbjct: 326 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCIQFVTHALKKGSDMELLYSK--K 383

Query: 242 RVLLKSAMKVI 252
            VL  S  + +
Sbjct: 384 NVLXYSYYRSV 394

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205723|gb|EFN83968.1| E3 ubiquitin-protein ligase TRIM33 [Harpegnathos saltator]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 99/138 (71%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A ET+  +  LL EVSYKRVLL+SAMKVI+DRQ LI EKKK L Q+IT+MV  LTNAIN 
Sbjct: 276 AAETRSSVSTLLKEVSYKRVLLRSAMKVIEDRQILILEKKKNLVQDITQMVVQLTNAINT 335

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYK 241
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI F    LN GSDM LL SK Y+
Sbjct: 336 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCILFGTYVLNKGSDMELLYSKKYR 395

Query: 242 RVLLKSAMKVIDDRPTIP 259
             +     ++   R  IP
Sbjct: 396 MSVTSHLQRIKSRRADIP 413

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005635|gb|EFA02083.1| hypothetical protein TcasGA2_TC007718 [Tribolium castaneum]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 92/117 (78%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A+ET+  I  +L +V YKR LL SAMKVIDDRQNLI +KK+ L +EIT++V  LTN IN+
Sbjct: 259 ASETRKFIADMLKDVGYKRALLCSAMKVIDDRQNLIVDKKQALVKEITQLVVKLTNTINV 318

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL  KL E+CDSKQKTL EKK  LEQLSR+TDHCIEF  + L+ GSDMALL SK
Sbjct: 319 RGKQLVSKLTEVCDSKQKTLQEKKQALEQLSRMTDHCIEFTQHALDNGSDMALLYSK 375

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236075|ref|XP_972162.2| PREDICTED: similar to Dual specificity tyrosine-phosphorylation-regulated kinase [Tribolium castaneum]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 92/117 (78%)

Query: 122  ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
            A+ET+  I  +L +V YKR LL SAMKVIDDRQNLI +KK+ L +EIT++V  LTN IN+
Sbjct: 2438 ASETRKFIADMLKDVGYKRALLCSAMKVIDDRQNLIVDKKQALVKEITQLVVKLTNTINV 2497

Query: 182  RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
            RGKQL  KL E+CDSKQKTL EKK  LEQLSR+TDHCIEF  + L+ GSDMALL SK
Sbjct: 2498 RGKQLVSKLTEVCDSKQKTLQEKKQALEQLSRMTDHCIEFTQHALDNGSDMALLYSK 2554

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554524|ref|XP_001605295.1| PREDICTED: transcription intermediary factor 1-alpha-like [Nasonia vitripennis]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 96/117 (82%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A+ET+  +K LL+EVSYKR LLKSAMKVI+DRQ LIS+KK  L Q+IT+MV  LTNA++ 
Sbjct: 272 ASETRQSVKNLLNEVSYKRELLKSAMKVIEDRQILISDKKTSLVQDITQMVMQLTNAVSS 331

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL  +LNE+C+ KQ TLNEKKV L+QLS+LTDHCI+FVN  L+ G+DM LL SK
Sbjct: 332 RGKQLILRLNEVCEQKQSTLNEKKVALDQLSKLTDHCIDFVNYALDKGTDMELLYSK 388

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180087|gb|EFN68155.1| E3 ubiquitin-protein ligase TRIM33 [Camponotus floridanus]

 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 92/117 (78%)

Query: 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
           A ET+  +  LL EVSYKRVLL+SAMKVI+DRQ LI EKKK L Q+IT+MV  LTNAIN 
Sbjct: 276 AAETRSSMSTLLKEVSYKRVLLRSAMKVIEDRQVLILEKKKNLVQDITQMVVQLTNAINT 335

Query: 182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           RGKQL  +LNE+CD KQ TLNEKKV L+QLS+LTDHCI F  + LN GSDM LL SK
Sbjct: 336 RGKQLVMRLNEVCDQKQNTLNEKKVALDQLSKLTDHCILFGTHALNKGSDMELLYSK 392

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
FB|FBgn0023097	1133	bon "bonus" [Drosophila melano	0.460	0.119	0.543	7.3e-31
FB|FBgn0023388	1097	Dap160 "Dynamin associated pro	0.375	0.100	0.362	2.1e-15
UNIPROTKB|Q9Y623	1939	MYH4 "Myosin-4" [Homo sapiens	0.699	0.105	0.277	4.5e-07
UNIPROTKB|F1SBR8	690	LOC100624599 "Uncharacterized	0.426	0.181	0.304	4.7e-07
UNIPROTKB|H0Y612	888	TRIM33 "E3 ubiquitin-protein l	0.426	0.140	0.304	6.6e-07
UNIPROTKB|I3LD78	948	I3LD78 "Uncharacterized protei	0.426	0.131	0.304	7.1e-07
UNIPROTKB|F1PLN6	995	TRIM33 "Uncharacterized protei	0.426	0.125	0.304	7.6e-07
UNIPROTKB|F1MNE1	1126	TRIM33 "Uncharacterized protei	0.426	0.111	0.304	8.8e-07
UNIPROTKB|Q9UPN9	1127	TRIM33 "E3 ubiquitin-protein l	0.426	0.110	0.304	8.8e-07
RGD|1307339	1127	Trim33 "tripartite motif-conta	0.426	0.110	0.304	8.8e-07

FB|FBgn0023097 bon "bonus" [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 7.3e-31, P = 7.3e-31
 Identities = 75/138 (54%), Positives = 95/138 (68%)

Query:   122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181
             ATE++  +  L+SE++YKR LL SA KVIDDRQ LI +KKK L +EIT M   +TN +N 
Sbjct:   280 ATESRQALSTLVSEINYKRFLLSSATKVIDDRQQLIHDKKKDLIKEITAMAVKITNTVNT 339

Query:   182 RGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYK 241
             RGKQL  +LNE+CDSK K L EKK TL+ LS  TDHCI+F+ N L  GSD A+LSSK   
Sbjct:   340 RGKQLIMRLNEVCDSKLKVLVEKKETLQLLSDNTDHCIDFMQNALEKGSDFAILSSK--- 396

Query:   242 RVLLKSAMKVIDDRPTIP 259
             + L++   K+   R  IP
Sbjct:   397 KSLVRHLQKLKCQRADIP 414

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

FB|FBgn0023388 Dap160 "Dynamin associated protein 160" [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 41/113 (36%), Positives = 73/113 (64%)

Query:     1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADE---QEQTNLLISKKQLAL 57
             M+EMS LKA++KEQN +L+ L  E+AK EA++KA+  A   E   QEQ N   + KQL +
Sbjct:   500 MSEMSQLKARIKEQNAKLLQLTQERAKWEAKSKASGAALGGENAQQEQLNAAFAHKQLII 559

Query:    58 KTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKR 110
               +++K++++  ++ +K++D+  N+  + +LK  L+ +++  E LY  Y  +R
Sbjct:   560 NQIKDKVENISKEIESKKEDINTNDVQMSELKAELSALITKCEDLYKEYDVQR 612

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045179 "apical cortex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

GO:0045860 "positive regulation of protein kinase activity" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9Y623 MYH4 "Myosin-4" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 63/227 (27%), Positives = 113/227 (49%)

Query:     3 EMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKK-QLA--LKT 59
             E++  +AK KE  ++++TL  EK  L+ + +A   A AD +E+ + LI  K QL   +K 
Sbjct:   866 ELAKTEAKRKELEEKMVTLMQEKNDLQLQVQAEADALADAEERCDQLIKTKIQLEAKIKE 925

Query:    60 LREKIQDLE---SQLSTKEKDLEVNNSNL----DDLKKTLANMMSDSEKLYNVYAEKRNI 112
             + E+ +D E   ++L+ K++ LE   S L    DDL+ TLA +  +     N        
Sbjct:   926 VTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEE 985

Query:   113 NSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMV 172
              +GL  +  A  TK   K  L E ++++ L    +++ +D+ N +++ K +L Q++ ++ 
Sbjct:   986 MAGLD-ETIAKLTKE--KKALQE-AHQQTL--DDLQMEEDKVNTLTKAKTKLEQQVDDLE 1039

Query:   173 KLLTNAINL-----RGKQ-LAYKLNEICDSKQKTLNEKKVTLEQLSR 213
               L     L     R K+ L   L    +S   T N+K+   E+L +
Sbjct:  1040 GSLEQEKKLCMDLERAKRKLEGDLKLAQESTMDTENDKQQLNEKLKK 1086

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=NAS

GO:0030048 "actin filament-based movement" evidence=NAS

GO:0006936 "muscle contraction" evidence=IDA

GO:0030016 "myofibril" evidence=IDA

GO:0005859 "muscle myosin complex" evidence=NAS

GO:0008307 "structural constituent of muscle" evidence=NAS

GO:0030017 "sarcomere" evidence=NAS

GO:0030049 "muscle filament sliding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F1SBR8 LOC100624599 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   320 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 379

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   380 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 439

Query:   246 KSAMK 250
             +  +K
Sbjct:   440 RHILK 444

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|H0Y612 TRIM33 "E3 ubiquitin-protein ligase TRIM33" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:    57 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 116

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   117 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 176

Query:   246 KSAMK 250
             +  +K
Sbjct:   177 RHILK 181

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|I3LD78 I3LD78 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   145 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 204

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   205 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 264

Query:   246 KSAMK 250
             +  +K
Sbjct:   265 RHILK 269

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PLN6 TRIM33 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   188 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 247

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   248 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 307

Query:   246 KSAMK 250
             +  +K
Sbjct:   308 RHILK 312

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0070410 "co-SMAD binding" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MNE1 TRIM33 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   320 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 379

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   380 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 439

Query:   246 KSAMK 250
             +  +K
Sbjct:   440 RHILK 444

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0070410 "co-SMAD binding" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9UPN9 TRIM33 "E3 ubiquitin-protein ligase TRIM33" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   320 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 379

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   380 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 439

Query:   246 KSAMK 250
             +  +K
Sbjct:   440 RHILK 444

GO:0003677 "DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070410 "co-SMAD binding" evidence=IPI

GO:0070412 "R-SMAD binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|1307339 Trim33 "tripartite motif-containing 33" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 38/125 (30%), Positives = 63/125 (50%)

Query:   126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
             K  I+ LL+++  K+  +  A   + +R   ++E  KR+ QEI   +  L N IN +GK 
Sbjct:   338 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 397

Query:   186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
             L  +L  +   +Q  L +++  +  LSR   H + F N  + +GS  ALL SK      L
Sbjct:   398 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 457

Query:   246 KSAMK 250
             +  +K
Sbjct:   458 RHILK 462

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0070410 "co-SMAD binding" evidence=ISO

GO:0070412 "R-SMAD binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	293
smart00502	127	smart00502, BBC, B-Box C-terminal domain	3e-16
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04

>gnl|CDD|128778 smart00502, BBC, B-Box C-terminal domain

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
           +  ++ LL+++  K   L+ A+K +      + E    +  +I      L NA+N R KQ
Sbjct: 2   REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQ 61

Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
           L   L E  ++K K L ++  +L Q      H I F    LN+G    LL SK
Sbjct: 62  LLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSK 114

Coiled coil region C-terminal to (some) B-Box domains. Length = 127

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 40/219 (18%), Positives = 91/219 (41%), Gaps = 11/219 (5%)

Query: 2   AEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLR 61
            E+S+L+++L+    RL  L+ E +    +     G    E EQ      K +  L+ L 
Sbjct: 688 RELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEELE 743

Query: 62  EKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKW 121
           E +  LE ++   + +L+   + +++L++ L  +      L    +  R      +L K 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803

Query: 122 ATETKHL------IKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLL 175
             E   +      I+  L+ ++ ++  L+  ++ + +++  + E+ K + +EI E +   
Sbjct: 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-ENLNGK 862

Query: 176 TNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRL 214
              +    ++L   L ++         E+     QL  L
Sbjct: 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	99.6
KOG4367|consensus	699		99.44
PF12126	324	DUF3583: Protein of unknown function (DUF3583); In	98.33
KOG1029|consensus	1118		97.53
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.07
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.04
smart00336	42	BBOX B-Box-type zinc finger.	96.77
KOG2177|consensus	386		96.01
PHA02562	562	46 endonuclease subunit; Provisional	95.78
PF07139	302	DUF1387: Protein of unknown function (DUF1387); In	94.25
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	87.68
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.18
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.99
PRK07352	174	F0F1 ATP synthase subunit B; Validated	83.7
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	83.59
PRK06231	205	F0F1 ATP synthase subunit B; Validated	82.2
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	81.52
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	81.42
PRK09173	159	F0F1 ATP synthase subunit B; Validated	80.83

>smart00502 BBC B-Box C-terminal domain

Probab=99.60  E-value=7.6e-14  Score=112.70  Aligned_cols=124  Identities=27%  Similarity=0.324  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          125 TKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEK  204 (293)
Q Consensus       125 ~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q  204 (293)
                      +|..|...+..++.+...+..++..+......+..+++.++.+|...|+.|+.+|++++..|+.+|+.++..+...|..+
T Consensus         1 ~k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q   80 (127)
T smart00502        1 QREALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ   80 (127)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhccchhHHHHHHHHH
Q psy583          205 KVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSA  248 (293)
Q Consensus       205 ~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L~~kk~l~eRl~~L  248 (293)
                      ...++..+..+..+++|+++.+..|++++||+..+.+..|+..+
T Consensus        81 ~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l  124 (127)
T smart00502       81 LESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL  124 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876

Coiled coil region C-terminal to (some) B-Box domains

>KOG4367|consensus

Probab=99.44  E-value=1.3e-12  Score=124.23  Aligned_cols=187  Identities=13%  Similarity=0.056  Sum_probs=167.1

Q ss_pred             chhhh-hHHHHHhhhhccchhh-h---hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583           84 NLDDL-KKTLANMMSDSEKLYN-V---YAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLIS  158 (293)
Q Consensus        84 ~~~~~-~~~l~~~ce~c~~l~c-~---~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~  158 (293)
                      +|.|| +.-+..||-.|-.++| .   =..|-+|. +..+.-++.-||.+|...|..+.++.++.++++..++.+.+.++
T Consensus       225 ~ct~h~~e~~smyc~~ck~pvc~~clee~khs~he-vkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq  303 (699)
T KOG4367|consen  225 TCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQ  303 (699)
T ss_pred             hccCCCCCCceEEEEecCChHHHHHHHhhcccchh-hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998 4567889999999999 3   45577776 77899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhccch
Q psy583          159 EKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK  238 (293)
Q Consensus       159 e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L~~k  238 (293)
                      ++..+.+.-+-..++.||.+|..|+..|+..++++.+.|++.+..|+......|+.....++|.-++++..+|..||+..
T Consensus       304 ~n~~ef~a~l~~q~d~lid~l~~rk~qll~~v~~e~e~k~kv~r~qi~~ct~kl~qtt~lme~cle~ike~dps~~lqis  383 (699)
T KOG4367|consen  304 ENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQIS  383 (699)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhheeeeeeehhhHHHHHHHHhccCCCcceeehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHH-hhhcCCCCCCCCCCcceeeecCC
Q psy583          239 AYKRVLLKSA-MKVIDDRPTIPEDTSYKITLKSP  271 (293)
Q Consensus       239 k~l~eRl~~L-~~~~~~~p~~p~~~~~~l~l~~~  271 (293)
                      ..++.|...+ ..|.+....+.-+..|++.|++-
T Consensus       384 ~ali~r~~~~e~~w~k~~~tp~~~tdf~l~ld~~  417 (699)
T KOG4367|consen  384 DALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS  417 (699)
T ss_pred             hHHHHHhhhhHHhhcccccCCccccceeEecCch
Confidence            9999997766 56666544434445577777763

>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length

Probab=98.33  E-value=2.8e-05  Score=71.38  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          134 SEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSR  213 (293)
Q Consensus       134 ~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~  213 (293)
                      ..+++....+..+-..+......+......+++.|++.+..++..++.++++||+.++..|+.--+.|..++..++.-|.
T Consensus         6 q~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLq   85 (324)
T PF12126_consen    6 QALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQ   85 (324)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34555566677777777778888888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCcchhccchhHHHHHHHHH
Q psy583          214 LTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSA  248 (293)
Q Consensus       214 ~L~~~i~fveq~Lk~gs~~e~L~~kk~l~eRl~~L  248 (293)
                      .+..+..+++....++++.+||....-+.+.|..|
T Consensus        86 Rir~G~~LVekM~~YASDQEVLdMh~FlreAL~rL  120 (324)
T PF12126_consen   86 RIRTGGALVEKMKLYASDQEVLDMHGFLREALERL  120 (324)
T ss_pred             HHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888888888888

It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.

>KOG1029|consensus

Probab=97.53  E-value=0.0002  Score=73.28  Aligned_cols=103  Identities=24%  Similarity=0.461  Sum_probs=85.9

Q ss_pred             CchhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCC--chh-hhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhcc
Q psy583            1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAH--ADE-QEQTNLLISKKQLALKTLREKIQDLESQLSTKEKD   77 (293)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (293)
                      |+||.+|+..++|+++.|+.|.+||+.|.++-|.--.++  -.+ ...+.-||-.|++..+.|||.+..+.+..++|-.+
T Consensus       485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~e  564 (1118)
T KOG1029|consen  485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNE  564 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999433322  222 56778899999999999999999999999999999


Q ss_pred             ccCCccchhhhhHHHHHhhhhccchh
Q psy583           78 LEVNNSNLDDLKKTLANMMSDSEKLY  103 (293)
Q Consensus        78 ~~~~~~~~~~~~~~l~~~ce~c~~l~  103 (293)
                      ++.++.++.+++..+--.--.|+.++
T Consensus       565 idi~n~qlkelk~~~~~q~lake~~y  590 (1118)
T KOG1029|consen  565 IDIFNNQLKELKEDVNSQQLAKEELY  590 (1118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98878888888777666655565554

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.07  E-value=3.3e-05  Score=50.95  Aligned_cols=37  Identities=5%  Similarity=0.084  Sum_probs=29.1

Q ss_pred             CccchhhhhHH-HHHhhhhccchhh---hhccccccccccch
Q psy583           81 NNSNLDDLKKT-LANMMSDSEKLYN---VYAEKRNINSGLQL  118 (293)
Q Consensus        81 ~~~~~~~~~~~-l~~~ce~c~~l~c---~~~eHk~H~~~~~I  118 (293)
                      ++..|..|+.+ +.+||.+|..++|   ....|++|. +.||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~H~-~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKGHK-IVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTTSE-EEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCCCE-EeEC
Confidence            45589999999 9999999999999   355599987 4454

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.04  E-value=6.4e-05  Score=48.42  Aligned_cols=31  Identities=13%  Similarity=0.090  Sum_probs=25.8

Q ss_pred             chhhhhH-HHHHhhhhccchhhh---hcccccccc
Q psy583           84 NLDDLKK-TLANMMSDSEKLYNV---YAEKRNINS  114 (293)
Q Consensus        84 ~~~~~~~-~l~~~ce~c~~l~c~---~~eHk~H~~  114 (293)
                      .|+.|+. |+.+||++|..++|.   ...|++|.+
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~~H~~   36 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHSGHRR   36 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcCCCCE
Confidence            4889988 999999999999993   344888873

>smart00336 BBOX B-Box-type zinc finger

Probab=96.77  E-value=0.00016  Score=47.30  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=26.3

Q ss_pred             cchhhhh-HHHHHhhhhccchhhh---hccccccc
Q psy583           83 SNLDDLK-KTLANMMSDSEKLYNV---YAEKRNIN  113 (293)
Q Consensus        83 ~~~~~~~-~~l~~~ce~c~~l~c~---~~eHk~H~  113 (293)
                      ..|..|+ .++.+||++|+.++|.   ...|++|.
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H~~H~   38 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEHRGHT   38 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhcCCCc
Confidence            4799998 9999999999999993   33788886

>KOG2177|consensus

Probab=96.01  E-value=0.065  Score=47.93  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh-hh---ccccccccccchHHHHHHHHHHHHH
Q psy583           56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN-VY---AEKRNINSGLQLDKWATETKHLIKG  131 (293)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c-~~---~eHk~H~~~~~I~eAa~~~K~~L~~  131 (293)
                      +|.++-+.+......     .........|..|+..+.+||++|..+.| .|   .+|.+|. +.++++++..++..+..
T Consensus        65 ~l~~~~~~~~~~~~~-----~~~~~~~~~c~~~~~~~~~~c~~~~~~~c~~c~~~~~h~~h~-~~~~~~~~~~~~~~~~~  138 (386)
T KOG2177|consen   65 LLANLVERLRQLRLS-----RPLGSKEELCEKHGEELKLFCEEDEKLLCVLCRESGEHRGHP-VLPLEEAAQEYREKLLA  138 (386)
T ss_pred             HHHHHHHHHHhcCCc-----ccccccchhhhhcCCcceEEecccccccCCCCCCcccccCCc-cccHHHHHHHHHHHHHH
Confidence            677777766555211     11111122899999999999999999888 34   4888887 67999999999833333


Q ss_pred             HH
Q psy583          132 LL  133 (293)
Q Consensus       132 ~L  133 (293)
                      .+
T Consensus       139 ~~  140 (386)
T KOG2177|consen  139 EL  140 (386)
T ss_pred             HH
Confidence            33

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.78  E-value=1.2  Score=44.86  Aligned_cols=14  Identities=14%  Similarity=0.404  Sum_probs=8.9

Q ss_pred             ccchhhhhHHHHHh
Q psy583           82 NSNLDDLKKTLANM   95 (293)
Q Consensus        82 ~~~~~~~~~~l~~~   95 (293)
                      ...+..+.+.+.+|
T Consensus       268 ~~~l~~~~~~~~~~  281 (562)
T PHA02562        268 KSKIEQFQKVIKMY  281 (562)
T ss_pred             HHHHHHHHHHHHHh
Confidence            33566666777776

>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals

Probab=94.25  E-value=1.6  Score=41.05  Aligned_cols=68  Identities=12%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          142 LLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLE  209 (293)
Q Consensus       142 ~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le  209 (293)
                      .+++....|..=.--|++.++.....|...|..|+..|-+|+-.|+.+++++..+...-|....+..+
T Consensus       161 DLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAe  228 (302)
T PF07139_consen  161 DLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAE  228 (302)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444334433344567788888889999999999999999999999999999999998888877766

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=87.68  E-value=24  Score=32.93  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             hhccccccc------cccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----H
Q psy583          105 VYAEKRNIN------SGLQLDK---WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI-SEKKKRLTQEI-----T  169 (293)
Q Consensus       105 ~~~eHk~H~------~~~~I~e---Aa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L-~e~~e~v~~eI-----~  169 (293)
                      .|.+.|+-.      |..|+..   ++...|.+|++....++.+-.++.+....+.++.+.| .+.+..|+.++     +
T Consensus        44 ~C~dNHGikPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEAR  123 (305)
T PF15290_consen   44 SCGDNHGIKPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEAR  123 (305)
T ss_pred             ecccCCCCCCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555433      5566654   7788899999999999999889999988887777665 45566665543     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          170 EMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD  216 (293)
Q Consensus       170 ~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~  216 (293)
                      ..+..|.++++.-+..|.+.=.-+..... .++-|-..++.-|..++
T Consensus       124 kEIkQLkQvieTmrssL~ekDkGiQKYFv-DINiQN~KLEsLLqsME  169 (305)
T PF15290_consen  124 KEIKQLKQVIETMRSSLAEKDKGIQKYFV-DINIQNKKLESLLQSME  169 (305)
T ss_pred             HHHHHHHHHHHHHHhhhchhhhhHHHHHh-hhhhhHhHHHHHHHHHH
Confidence            56666777777777777665333333322 23444444444444333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.18  E-value=32  Score=31.17  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          133 LSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ  198 (293)
Q Consensus       133 L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl  198 (293)
                      |..++.+...+++....+......++...     ..-..+..-+..|..++...+++|..|..+..
T Consensus         3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-----~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn   63 (230)
T PF10146_consen    3 IKEIRNKTLELEKLKNEILQEVESLENEE-----KCLEEYRKEMEELLQERMAHVEELRQINQDIN   63 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555444444322     22234555566666666666666665555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.99  E-value=52  Score=34.84  Aligned_cols=35  Identities=3%  Similarity=0.097  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          189 KLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVN  223 (293)
Q Consensus       189 eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fve  223 (293)
                      ..++.....+..+..+++.+...+..+....++.+
T Consensus       632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~  666 (717)
T PF10168_consen  632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ  666 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555555555433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=83.70  E-value=27  Score=29.86  Aligned_cols=61  Identities=13%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLT  176 (293)
Q Consensus       116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li  176 (293)
                      -||..+..+.+..+...+.................+......+..+...........+...
T Consensus        42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~  102 (174)
T PRK07352         42 GFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIR  102 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999998888888888888777777777666666555555443

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=83.59  E-value=27  Score=29.86  Aligned_cols=104  Identities=17%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy583          115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLT--------QEITEMVKLLTNAINLRGKQL  186 (293)
Q Consensus       115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~--------~eI~~~fe~Li~~Leere~~L  186 (293)
                      ++.|.+.+..-...++.-|..++..+..+-.-...+.......+.+...+.        .+|..+|+..+.        +
T Consensus        18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~--------l   89 (159)
T PF05384_consen   18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE--------L   89 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH--------H
Confidence            345677666666677777777777666666666666655555555544433        344444443222        2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583          187 AYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN  227 (293)
Q Consensus       187 L~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk  227 (293)
                      --+|- ..+.+...|...++.++..+..+...+..++..+.
T Consensus        90 Q~~L~-~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~s  129 (159)
T PF05384_consen   90 QVRLA-MLREREKQLRERRDELERRLRNLEETIERAENLVS  129 (159)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222 23445566777788888888888888887777764

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=82.20  E-value=35  Score=30.18  Aligned_cols=60  Identities=10%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLL  175 (293)
Q Consensus       116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~L  175 (293)
                      -||..+..+.+..+...+..+.....+....+...+......+..+...........+..
T Consensus        71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~  130 (205)
T PRK06231         71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQL  130 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999888888888887777777777666666555555543

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=81.52  E-value=26  Score=28.26  Aligned_cols=59  Identities=15%  Similarity=0.080  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          158 SEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD  216 (293)
Q Consensus       158 ~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~  216 (293)
                      +...+.+.......+..+-..++++-..+|..+.-.....+..|...++.|+..+..|.
T Consensus        58 ~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        58 KTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444556667777888888888888888888888888888888888887765

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=81.42  E-value=38  Score=30.02  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=41.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI  168 (293)
Q Consensus       116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI  168 (293)
                      -||..+..+.+..+...|........+....+...+..+..-+.++.......
T Consensus        76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A  128 (204)
T PRK09174         76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA  128 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999988888888887777776666666655554433

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=80.83  E-value=32  Score=28.82  Aligned_cols=66  Identities=11%  Similarity=0.049  Sum_probs=51.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL  181 (293)
Q Consensus       116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Lee  181 (293)
                      -||..+..+.+..+...+.................+......+..+.............++.....
T Consensus        25 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~   90 (159)
T PRK09173         25 GMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKR   90 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999998888888888888888887777777666666665544443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 85/326 (26%)

Query: 9   AKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQ----LALKTLREKI 64
            + + Q + ++++  +        K       D Q+    ++SK++    +  K      
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCK-------DVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 65  QDLESQLSTKEKDL------EVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRN--INSGL 116
             L   L +K++++      EV   N   L   +         +  +Y E+R+   N   
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 117 QLDKW----ATETKHLIKGLLSEVSYKRVLL-------KS--AMKVIDDRQNL------- 156
              K+          L + LL     K VL+       K+  A+ V    +         
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 157 --ISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRL 214
             ++ K     + + EM++ L         Q+        D              +L R 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRR- 236

Query: 215 TDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDD--RPTIPE--DTSYKITLKS 270
                              LL SK Y+  LL     V+ +          + S KI L  
Sbjct: 237 -------------------LLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILL-- 270

Query: 271 PSSSTSSKSVT---PPSSSVNIPLNN 293
              +T  K VT     +++ +I L++
Sbjct: 271 ---TTRFKQVTDFLSAATTTHISLDH 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 93/313 (29%)

Query: 10  KLKEQNQRLITLN--HEKAKLEARTKANPGAHADEQEQTNLLI-----SKKQ-LALKTLR 61
           +L   NQ     N    +  L+ R         + +   N+LI     S K  +AL    
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 62  EKIQDLESQLSTKEKDLEVNNSN-LDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDK 120
                ++ ++  K   L + N N  + + + L  ++   +  +   ++  + N  L++  
Sbjct: 173 SY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIH- 228

Query: 121 WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQN------------------------- 155
                +  ++ LL    Y+  LL     V+ + QN                         
Sbjct: 229 ---SIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 156 LISEKKKRLTQEI-------TEMVKLLTNAINLRGKQL---AYKLN--------EICDSK 197
           L +     ++ +         E+  LL   ++ R + L       N        E     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 198 QKTLNE-KKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRP 256
             T +  K V  ++L+ + +  +               L    Y+++  + ++       
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV-------------LEPAEYRKMFDRLSV------- 380

Query: 257 TIPEDTSYKITLK 269
             P      I   
Sbjct: 381 -FPPSA--HIPTI 390

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 24/218 (11%)

Query: 2    AEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLR 61
             E      K+K+    ++ +  +  KL    K      +D        +++++   K L 
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN----LAEEEEKAKNLT 1031

Query: 62   EKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGL--QLD 119
            +     ES +S  E  L+    +  +L+K    +  +S  L+   AE +   + L  QL 
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 120  KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISE-------------KKKRLTQ 166
            K   E +  +  L  E S K   LK   ++     +L  +             +K+ L++
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 167  EITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEK 204
            E+  +   L + ++    Q      E+  S  K  ++K
Sbjct: 1152 ELEALKTELEDTLDTTATQ-----QELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 41/242 (16%), Positives = 94/242 (38%), Gaps = 34/242 (14%)

Query: 7    LKAKLKEQNQRLITLNHEKAKLE---------------ARTKANPGAHADEQEQTNLL-- 49
            ++A+++E+ +R   L  EK K++               AR K        + +   +   
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 50   -------ISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKL 102
                    +K     K L E++ DL + L+ +E+  +      +  +  ++ +    +K 
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 103  YNVYAEKRNINSGLQ-----LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI 157
                 E   I   L+     L +   E +  I  L ++++ K   L++A+  ++D  +  
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111

Query: 158  S---EKKKRLTQEITEMVKLLTNAINLRGK--QLAYKLNEICDSKQKTLNEKKVTLEQLS 212
            +   +K + L   I+++ + L +    R K  +    L+E  ++ +  L +   T     
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

Query: 213  RL 214
             L
Sbjct: 1172 EL 1173

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/170 (11%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 5    SALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKI 64
              L+ K+ +  +++   N E   L  +       ++ E E+    +      L+   E+ 
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK----LRSDVERLRMSEEEA 979

Query: 65   QDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATE 124
            ++  +++ + ++++      L   +     +   ++K  +            + ++  +E
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH------------ETEQLVSE 1027

Query: 125  TKHLIKGLLSEVSYKRVLLKSAMKVIDDRQN-LISEKKKRLTQEITEMVK 173
             K     L +E       +    K I +     + E+ K+L  ++ +   
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	98.16
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	98.13
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	97.86
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	97.78
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	97.76
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	97.53
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	97.44
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	97.25
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	96.89
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.8
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	89.08
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.96
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	88.21
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.14
1loi_A	26	Cyclic 3',5'-AMP specific phosphodiesterase RD1; h	83.86

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=98.16  E-value=1.9e-08  Score=73.39  Aligned_cols=48  Identities=10%  Similarity=0.095  Sum_probs=41.7

Q ss_pred             cchhhhhHHHHHhhhhccchhh---hhccccccccccchHHHHHHHHHHHHH
Q psy583           83 SNLDDLKKTLANMMSDSEKLYN---VYAEKRNINSGLQLDKWATETKHLIKG  131 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c---~~~eHk~H~~~~~I~eAa~~~K~~L~~  131 (293)
                      ..|..|+++|++||++|..++|   ...+|++|. +.||++|++.+|..|+.
T Consensus        19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~-~~~l~ea~~~~k~~L~~   69 (72)
T 2csv_A           19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHS-TVTVEEAKAEKETESGP   69 (72)
T ss_dssp             CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSC-EEEHHHHHHHHSSCCCC
T ss_pred             CcCcccCCceEEEeCCCCeEEccccCCCCCCCCC-EecHHHHHHHHHHHHHH
Confidence            4899999999999999999988   247899997 67999999998876654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=98.13  E-value=5e-09  Score=74.61  Aligned_cols=48  Identities=6%  Similarity=-0.086  Sum_probs=40.9

Q ss_pred             cchhhh-hHHHHHhhhhccchhhh----hccccccccccchHHHHHHHHHHHHH
Q psy583           83 SNLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWATETKHLIKG  131 (293)
Q Consensus        83 ~~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~~~K~~L~~  131 (293)
                      ..|..| +++|++||++|..++|.    ..+|++|. +.||++|++.+|.+|+.
T Consensus         9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~~a~~~~k~~L~~   61 (64)
T 2d8u_A            9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACE-VAPLQSVFQGQKTESGP   61 (64)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSC-EECTTTCCSSCCCCSSC
T ss_pred             CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCC-eeCHHHHHHHHHHHHHH
Confidence            389999 99999999999999993    35899997 67999999888776654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=97.86  E-value=3.8e-07  Score=61.61  Aligned_cols=40  Identities=8%  Similarity=-0.009  Sum_probs=32.6

Q ss_pred             cchhhh-hHHHHHhhhhccchhh---hhccccccccccchHHHHH
Q psy583           83 SNLDDL-KKTLANMMSDSEKLYN---VYAEKRNINSGLQLDKWAT  123 (293)
Q Consensus        83 ~~~~~~-~~~l~~~ce~c~~l~c---~~~eHk~H~~~~~I~eAa~  123 (293)
                      ..|+.| +.+|++||++|..++|   ...+|++|. +.||++|++
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~-~~~l~ea~~   50 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQ-YQFLEDAVR   50 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCC-EEETTC---
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCc-eecHHHHhC
Confidence            379999 9999999999999988   357899997 679998863

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=97.78  E-value=3.7e-08  Score=73.86  Aligned_cols=53  Identities=11%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             chhhh-hHHHHHhhhhccchhhh----hccccccccccchHHHHHHHHHHHHHHHHHHH
Q psy583           84 NLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWATETKHLIKGLLSEVS  137 (293)
Q Consensus        84 ~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk  137 (293)
                      .|..| +.+|.+||++|..++|.    ..+|++|. +.||++|++.+|..|+..+..++
T Consensus        20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~ea~~~~k~~L~~~l~~L~   77 (84)
T 2dja_A           20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQ-VASLNDRFEKLKQTLEMNLTNLV   77 (84)
T ss_dssp             CCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCC-BCCCCSSCCCCCCCCCCCCCCCC
T ss_pred             cCcCcCCccccEEcCCCCceEcccCcCCCCCCCCC-ccCHHHHHHHHHHHHHHHHHHHH
Confidence            89999 69999999999999883    37899997 67999999998887776655443

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=97.76  E-value=5.3e-07  Score=61.69  Aligned_cols=40  Identities=10%  Similarity=0.027  Sum_probs=34.4

Q ss_pred             cchhhhhHHHHHhhhhccchhhh----hccccccccccchHHHHH
Q psy583           83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWAT  123 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~  123 (293)
                      ..|..|+++|++||++|..++|.    ..+|++|. +.||++|++
T Consensus         9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~ea~~   52 (53)
T 2did_A            9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHT-VVPLSGPSS   52 (53)
T ss_dssp             CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSC-EEECCCTTT
T ss_pred             CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCc-EeeHHHHhc
Confidence            48999999999999999999883    37899997 679988763

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.53  E-value=1.4e-06  Score=61.07  Aligned_cols=39  Identities=10%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             cchhhhhHHHHHhhhhccchhhh----hccccccccccchHHHH
Q psy583           83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWA  122 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa  122 (293)
                      ..|..|+++|++||++|..++|.    ..+|++|. +.||++|+
T Consensus        15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~-~~~l~ea~   57 (59)
T 2yrg_A           15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHH-TFPTSGPS   57 (59)
T ss_dssp             SBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCC-EEECCSSC
T ss_pred             ccChhhCceeeeecCCCCcEEecccCCCCcCCCCc-EeeHHHHh
Confidence            48999999999999999999883    37899997 67888875

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=97.44  E-value=5e-06  Score=53.89  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=29.1

Q ss_pred             cchhhhhHHHHHhhhhccchhhh----hccccccccccch
Q psy583           83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQL  118 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I  118 (293)
                      ..|..|+++|++||++|..++|.    ..+|++|. +.||
T Consensus         4 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l   42 (42)
T 1fre_A            4 EKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHN-FLPI   42 (42)
T ss_dssp             CCCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCC-CCCC
T ss_pred             ccchhhCCeeeEEeCCCCeEEeccCCCCCCCCCCc-EecC
Confidence            47999999999999999999983    36799996 4553

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=97.25  E-value=7.3e-06  Score=54.77  Aligned_cols=36  Identities=6%  Similarity=0.007  Sum_probs=30.3

Q ss_pred             cchhhhh-HHHHHhhhhccchhh-h---hccccccccccchH
Q psy583           83 SNLDDLK-KTLANMMSDSEKLYN-V---YAEKRNINSGLQLD  119 (293)
Q Consensus        83 ~~~~~~~-~~l~~~ce~c~~l~c-~---~~eHk~H~~~~~I~  119 (293)
                      ..|..|+ ++|++||++|..++| .   ..+|++|. ++||+
T Consensus         7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~   47 (48)
T 3ddt_A            7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACE-VAPLQ   47 (48)
T ss_dssp             CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSC-EEECC
T ss_pred             CcCCCCCCccccEEcCCCCeeEcccccCCCcCCCCc-EEeCC
Confidence            4799999 999999999999998 2   45899997 56764

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.89  E-value=2.6e-05  Score=54.18  Aligned_cols=35  Identities=11%  Similarity=0.037  Sum_probs=29.1

Q ss_pred             cchhhhhHHHHHhhhhccchhhh----hccccccccccch
Q psy583           83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQL  118 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I  118 (293)
                      ..|..|+++|++||++|..++|.    ..+|++|. +.||
T Consensus        19 ~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~-~~~l   57 (57)
T 2egm_A           19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQHS-VVPL   57 (57)
T ss_dssp             SBCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSC-EECC
T ss_pred             CcChhhCceeeEEcCCCCcEEecccCCCCCCCCCc-EecC
Confidence            37999999999999999999883    36899996 4453

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.80  E-value=0.00035  Score=53.44  Aligned_cols=36  Identities=8%  Similarity=0.020  Sum_probs=30.0

Q ss_pred             cchhhh-hHHHHHhhhhccchhhh----hccccccccccchH
Q psy583           83 SNLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLD  119 (293)
Q Consensus        83 ~~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~  119 (293)
                      ..|..| +.+|++||++|..++|.    ..+|++|. +.+|+
T Consensus        60 ~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~H~-~~~l~  100 (101)
T 2jun_A           60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQ-VAALS  100 (101)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSSSC-BCCCC
T ss_pred             CcCcCcCCCcceEECCCCCCccchhcCCCCCcCCCC-eecCC
Confidence            489999 69999999999999883    36899997 55764

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.96  E-value=9.7  Score=37.14  Aligned_cols=108  Identities=7%  Similarity=-0.000  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKV----IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEI  193 (293)
Q Consensus       118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~----l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~  193 (293)
                      |.....+.-..|...|..++...+.+++.-..    +....+.|+.+..... +....+.++-.-|+++...|-.+|+..
T Consensus        51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQ  129 (562)
T 3ghg_A           51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEK  129 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555566565555555433332    2333333433333333 555566666677888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583          194 CDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN  227 (293)
Q Consensus       194 ~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk  227 (293)
                      - ..+++|+..++.+...+..|+..|+.--+..+
T Consensus       130 l-snIrvLQsnLedq~~kIQRLEvDIdiqirsCK  162 (562)
T 3ghg_A          130 V-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR  162 (562)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7 77788888888888888888888877777765

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=88.21  E-value=1.6  Score=33.43  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=14.0

Q ss_pred             chhhhhHHHHHhhhhccchhhhhccc
Q psy583           84 NLDDLKKTLANMMSDSEKLYNVYAEK  109 (293)
Q Consensus        84 ~~~~~~~~l~~~ce~c~~l~c~~~eH  109 (293)
                      ....+.+.|.+|=.+ +.+|++|+..
T Consensus        32 ~i~~l~~~l~~l~~~-g~~CPvCgs~   56 (112)
T 1l8d_A           32 KIGDLKTAIEELKKA-KGKCPVCGRE   56 (112)
T ss_dssp             HHHHHHHHHHHHTTC-SEECTTTCCE
T ss_pred             HHHHHHHHHHHhhcC-CCCCCCCCCc
Confidence            445566666666322 5555567654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.14  E-value=3.8  Score=39.95  Aligned_cols=116  Identities=10%  Similarity=0.084  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583          128 LIKGLLSEVSYKRVLLKSAMK----VIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNE  203 (293)
Q Consensus       128 ~L~~~L~~lk~k~~~le~~l~----~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~  203 (293)
                      +|+..+..++........+..    .++.+..... .-+.+..+|....++-|..|+.+-..-+..| +.-+   ..|.+
T Consensus        68 ELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnI-rvLQ---snLed  142 (562)
T 3ghg_A           68 KLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI-QLLQ---KNVRA  142 (562)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHH
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHH
Confidence            344444444444444433333    3444444433 3344566666677777777776665555443 2233   34444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCcchh-ccchhHHHHHHHHH
Q psy583          204 KKVTLEQLSRLTDHCIEFVNNGLNTGSDMAL-LSSKAYKRVLLKSA  248 (293)
Q Consensus       204 q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~-L~~kk~l~eRl~~L  248 (293)
                      |+..++..-..+.-.++.+.-........+| +.....+..+|..+
T Consensus       143 q~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv  188 (562)
T 3ghg_A          143 QLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV  188 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence            4444444445556667777777655444333 23445555666666

>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1

Probab=83.86  E-value=0.35  Score=26.95  Aligned_cols=12  Identities=8%  Similarity=0.130  Sum_probs=10.2

Q ss_pred             HHHhhhhccchh
Q psy583           92 LANMMSDSEKLY  103 (293)
Q Consensus        92 l~~~ce~c~~l~  103 (293)
                      .+||||+|..+-
T Consensus         4 vdffcetcskpw   15 (26)
T 1loi_A            4 VDFFCETCSKPW   15 (26)
T ss_dssp             HHHHHHTSSCTT
T ss_pred             HHHHHHhcCCch
Confidence            579999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	98.41
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	98.11
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	98.0
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	97.83
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	97.65

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.5e-09  Score=72.02  Aligned_cols=43  Identities=12%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             cchhhhhHHHHHhhhhccchhh---hhccccccccccchHHHHHHHH
Q psy583           83 SNLDDLKKTLANMMSDSEKLYN---VYAEKRNINSGLQLDKWATETK  126 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c---~~~eHk~H~~~~~I~eAa~~~K  126 (293)
                      ..|.+||++|++||.+|+.+||   ...+|++|. ++||++|++..|
T Consensus        12 ~~C~~H~e~l~lyC~~c~~~iC~~C~~~~H~~H~-~~~l~~a~~~~k   57 (59)
T d2csva1          12 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHS-TVTVEEAKAEKE   57 (59)
T ss_dssp             CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSC-EEEHHHHHHHHS
T ss_pred             CchhhhCCccceECCCCCceECcccCcccCCCCC-eeCHHHHHHHHh
Confidence            3899999999999999999999   478899997 679999988765

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9.3e-09  Score=68.75  Aligned_cols=42  Identities=10%  Similarity=-0.007  Sum_probs=35.8

Q ss_pred             chhhh-hHHHHHhhhhccchhh----hhccccccccccchHHHHHHHH
Q psy583           84 NLDDL-KKTLANMMSDSEKLYN----VYAEKRNINSGLQLDKWATETK  126 (293)
Q Consensus        84 ~~~~~-~~~l~~~ce~c~~l~c----~~~eHk~H~~~~~I~eAa~~~K  126 (293)
                      .|+.| +.+|+|||.+|..+||    ..++|++|. +.+|++|++++|
T Consensus         3 ~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk~H~-v~~l~~a~~~~K   49 (51)
T d2d8ua1           3 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACE-VAPLQSVFQGQK   49 (51)
T ss_dssp             CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSC-EECTTTCCSSCC
T ss_pred             CCcccCcCcceEEcCCCCceECccccCcCCcCcCc-CcCHHHHHHHHc
Confidence            79999 6799999999999999    246899997 679999987654

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-09  Score=78.24  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=41.7

Q ss_pred             cchhhh-hHHHHHhhhhccchhhh----hccccccccccchHHHHHHHHHHHHHHH
Q psy583           83 SNLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWATETKHLIKGLL  133 (293)
Q Consensus        83 ~~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~~~K~~L~~~L  133 (293)
                      ..|+.| +++|+|||++|..++|.    .+.|++|. +.+|++|++.+|..|+..|
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk~H~-~~~i~~a~~~~k~~l~~~l   66 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQ-VASLNDRFEKLKQTLEMNL   66 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCC-BCCCCSSCCCCCCCCCCCC
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCCCCCc-CcCHHHHHHHHHHHHHHHH
Confidence            379999 79999999999999992    46899997 6799999988877665544

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.00  E-value=9.4e-08  Score=60.17  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             cchhhhhHHHHHhhhhccchhh----hhccccccccccch
Q psy583           83 SNLDDLKKTLANMMSDSEKLYN----VYAEKRNINSGLQL  118 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c----~~~eHk~H~~~~~I  118 (293)
                      +.|..|+++|++||++|..++|    ...+|++|. ++||
T Consensus         1 e~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-v~pi   39 (39)
T d1frea_           1 EKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHN-FLPI   39 (39)
T ss_dssp             CCCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCC-CCCC
T ss_pred             CCCcccCcceeEEcccCCcEeeccCcCCCCcCCCc-EeeC
Confidence            3699999999999999999999    256899997 6675

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.6e-07  Score=58.40  Aligned_cols=35  Identities=11%  Similarity=0.071  Sum_probs=30.2

Q ss_pred             cchhhhhHHHHHhhhhccchhh----hhccccccccccch
Q psy583           83 SNLDDLKKTLANMMSDSEKLYN----VYAEKRNINSGLQL  118 (293)
Q Consensus        83 ~~~~~~~~~l~~~ce~c~~l~c----~~~eHk~H~~~~~I  118 (293)
                      ..|..|+++|++||.+|..++|    ..++|++|. ++||
T Consensus         2 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-v~pi   40 (40)
T d2dida1           2 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHT-VVPL   40 (40)
T ss_dssp             CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSC-EEEC
T ss_pred             CcchhhCccceEEcccCCcEeeccCcCCCCcCCCc-EecC
Confidence            4799999999999999999999    256899997 6675

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=5.3e-07  Score=58.89  Aligned_cols=36  Identities=8%  Similarity=0.051  Sum_probs=30.2

Q ss_pred             chhhh-hHHHHHhhhhccchhhh----hccccccccccchHH
Q psy583           84 NLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDK  120 (293)
Q Consensus        84 ~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~e  120 (293)
                      .|..| +.+|.+||.+|..+||.    .++|++|. +.+|+|
T Consensus         7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~~H~-~~~l~e   47 (47)
T d2dq5a1           7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQ-VAALSE   47 (47)
T ss_dssp             BCSSCTTSBEEEEETTTTEEEEHHHHHTSSTTSSC-CCCSCC
T ss_pred             cchhhCCCcceEEcCCCCccCCccCcCcCCcCCCe-EeeCCC
Confidence            89999 68999999999999992    46899997 567653