Psyllid ID: psy5853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MVLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHccHcHEEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mvlpppikpdisnvtgqgggtaeyRRRTYEfvdnnrrdyrsgysdsnsvQLSLAKIAIDRAVISRCYMyamypngdgdisrdQVLHEHVKNLAKiitpnhkylripkmfhsecpwpaaQAEISSISSYKTAHDKVQCVYRTLNTILNLLSltsavpaaddliPVLVYVLIKanppsllsTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Flexible Loop (DISEMBL)
mvlpppikpdisnvtgqgggtaeyrrrtyefvdnnrrdyrsgysdsnsvqlsLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Low Complexity Region (SEG)
MVLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRtlntilnllsltsAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Disordered region (IsUnstruct)
***************************TYEFVD**************SVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTM****
Disordered Region (DISOPRED)
******I*********************YEFVDNNRRDYR********VQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDY**
Disordered Region (DISEMBL)
MVLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Disordered Region (DISPRO)
*VLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLPPPIKPDISNVTGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q6PAR5	1458	GTPase-activating protein	yes	N/A	0.806	0.120	0.564	7e-59
A5D794	1413	GTPase-activating protein	yes	N/A	0.806	0.123	0.564	8e-59
Q14C86	1478	GTPase-activating protein	yes	N/A	0.806	0.118	0.564	8e-59
A2RV61	1452	GTPase-activating protein	N/A	N/A	0.806	0.120	0.553	9e-57
Q9VZ08	1712	Receptor-mediated endocyt	yes	N/A	0.866	0.109	0.428	2e-44
Q29HW3	1774	Receptor-mediated endocyt	yes	N/A	0.764	0.093	0.437	4e-40
Q9GYH7	1093	Receptor-mediated endocyt	yes	N/A	0.751	0.149	0.475	1e-38
A8WVM4	1104	Receptor-mediated endocyt	N/A	N/A	0.737	0.144	0.429	8e-34
Q9LT31	520	Vacuolar protein sorting-	yes	N/A	0.788	0.328	0.311	4e-17
Q9JM13	491	Rab5 GDP/GTP exchange fac	no	N/A	0.700	0.309	0.296	1e-15

>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2

 Score =  226 bits (577), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)

Query: 43   YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
            + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct: 1282 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1341

Query: 103  LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
            L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R  +TI+NLLSL +  +VP ADD
Sbjct: 1342 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1401

Query: 161  LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
             +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D ++
Sbjct: 1402 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1458

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.
Mus musculus (taxid: 10090)

>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1

 Score =  226 bits (577), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)

Query: 43   YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
            + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct: 1237 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1296

Query: 103  LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
            L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R  +TI+NLLSL +  +VP ADD
Sbjct: 1297 LQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1356

Query: 161  LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
             +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D ++
Sbjct: 1357 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1413

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Bos taurus (taxid: 9913)

>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2

 Score =  226 bits (576), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 142/177 (80%), Gaps = 2/177 (1%)

Query: 43   YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
            + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct: 1302 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1361

Query: 103  LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
            L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R  +TI+NLLSL +  +VP ADD
Sbjct: 1362 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1421

Query: 161  LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
             +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D ++
Sbjct: 1422 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK 1478

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Homo sapiens (taxid: 9606)

>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1

 Score =  219 bits (559), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 139/177 (78%), Gaps = 2/177 (1%)

Query: 43   YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
            + +++  QL  A+IAI+R++++R +  A  PN D DI RDQVLHEH+K L+K++T NH+ 
Sbjct: 1276 WQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRA 1335

Query: 103  LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
            L+IP+++  E PWP+AQ EI +IS+YKT  DKVQC+ R  +TI+NLLSL +  +VP ADD
Sbjct: 1336 LQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEYSVPGADD 1395

Query: 161  LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
             +PVLV+VLIKANP  LLSTVQY++SFY+N++ GE  YWW+QF +A+EFIKT+D ++
Sbjct: 1396 FVPVLVFVLIKANPTYLLSTVQYISSFYSNRLIGEESYWWMQFTAAVEFIKTIDDRK 1452

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking.

Xenopus laevis (taxid: 8355)

>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila melanogaster GN=CG1657 PE=1 SV=2

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/189 (42%), Positives = 128/189 (67%), Gaps = 1/189 (0%)

Query: 28   TYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHE 87
            T EFV++  ++ RS     +  Q+  A++AI+R ++ + Y   M+PN D D+SRD+VL  
Sbjct: 1522 TEEFVESLLQELRSSADLQDEWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSA 1581

Query: 88   HVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILN 147
            H+  L + + P H  L I + +  E PW  AQ ++  +++YKT  +K+QC+   +++I++
Sbjct: 1582 HIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMS 1641

Query: 148  LLSLTSA-VPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSA 206
            LL ++S  VPAADDL+PVL+YV+I ANPP LLSTV+Y++ F   K+EGE +++W  F S 
Sbjct: 1642 LLRMSSGRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGKKLEGEDEFYWTLFGSV 1701

Query: 207  IEFIKTMDY 215
            ++FIKTMDY
Sbjct: 1702 VKFIKTMDY 1710

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 113/167 (67%), Gaps = 1/167 (0%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            Q+  A+ AI+R ++   Y   M+PN D D+SRD VL  H+  L + + P H  L I + +
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEY 1665

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSA-VPAADDLIPVLVYV 168
              E PW  AQ ++  +++YKT  +K+QC+   +++I++LL ++   VPAADDL+PVL+YV
Sbjct: 1666 LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRVPAADDLLPVLIYV 1725

Query: 169  LIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMDY 215
            +I ANPP LLSTV+Y++ F   K++GE +++W  F S ++FIKTMDY
Sbjct: 1726 VIMANPPYLLSTVEYISCFLGRKLDGENEFYWTLFGSVVKFIKTMDY 1772

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans GN=rme-6 PE=1 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 113/166 (68%), Gaps = 3/166 (1%)

Query: 51   LSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFH 110
            +S A   I+R VI   Y  A YPN D D  RD++L   +  ++ ++TP + +L+IP+  H
Sbjct: 927  MSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDFLKIPEHLH 986

Query: 111  SECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYV 168
             E PWP+AQAE+S +  Y TA DK+ CV R  + I NL++L+S  AV +ADDL PVLV+V
Sbjct: 987  GEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDVINNLVALSSKNAVASADDLTPVLVFV 1046

Query: 169  LIKANPPSLLSTVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTM 213
            +IKANP +LLS VQ+V +F  +++E G   Y+WV F SA+E+IKT+
Sbjct: 1047 IIKANPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYIKTI 1092

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis. Acts by regulating the activation of rab-5 by exchanging bound GDP for free GTP at clathrin coated pits.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1

 Score =  143 bits (361), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 109/163 (66%), Gaps = 3/163 (1%)

Query: 54   AKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSEC 113
            A   ++R V+   Y  A +PN + D  +D++L   +   +  +TP H+ L+IP+    E 
Sbjct: 941  AMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEA 1000

Query: 114  PWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYVLIK 171
            PWP+AQAE+S + +Y TA +K+ C+ R  + I NL++L+S  AV +ADDL PVLV+V+IK
Sbjct: 1001 PWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIK 1060

Query: 172  ANPPSLLSTVQYVNSFYANKME-GEIQYWWVQFCSAIEFIKTM 213
            ANP SLLS +Q++ +F  +++E G   Y+WV F SA+E+IKT+
Sbjct: 1061 ANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYIKTI 1103

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in endocytosis. Acts by regulating the activation of rab-5 by exchanging bound GDP for free GTP at clathrin coated pits.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 9/180 (5%)

Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
           +S  +  +L  A   +++ V+++ +      N + ++  D+ L + +  + + I+P +  
Sbjct: 67  WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPEN-- 123

Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLL---SLTSA--VPA 157
           L I   F +E  W  AQ E+  I+ YK   DK+ C+      I NLL   S+ S    P 
Sbjct: 124 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 183

Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
           AD+ +PVL+YV IKANPP L S + Y+  +   +K+ GE  Y++    SA  FI  +D K
Sbjct: 184 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 243

Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 58  IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
           I++ +++R Y +   P    D  +D  + + ++ L   +TP  + L +P   + E P  +
Sbjct: 211 IEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTP--QMLCVP--VNEEIPEVS 265

Query: 118 -----AQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDLIPVLVYVLIK 171
                A  +I  + S +   DK+ C+ R    I N + +T   PA ADD +P L+Y+++K
Sbjct: 266 DMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 325

Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
            NPP L S +QY+  F   +  M GE  Y++   C A+ FI+ +D
Sbjct: 326 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 370

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A (By similarity). Can act as a ubiquitin ligase.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
332025020	1496	GTPase-activating protein and VPS9 domai	0.760	0.110	0.688	8e-68
307196597	1539	GTPase-activating protein and VPS9 domai	0.792	0.111	0.660	1e-67
322787043	1526	hypothetical protein SINV_11752 [Solenop	0.760	0.108	0.682	2e-67
383865470	1591	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.760	0.103	0.676	3e-67
307170869	1530	GTPase-activating protein and VPS9 domai	0.760	0.107	0.676	5e-67
380023826	1553	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.760	0.106	0.682	1e-66
340711667	1554	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.760	0.106	0.676	1e-66
350405929	1558	PREDICTED: GTPase-activating protein and	0.760	0.105	0.670	2e-66
345485446	1576	PREDICTED: GTPase-activating protein and	0.760	0.104	0.670	2e-66
328723486	1450	PREDICTED: GTPase-activating protein and	0.760	0.113	0.656	3e-63

>gi|332025020|gb|EGI65207.1| GTPase-activating protein and VPS9 domain-containing protein 1 [Acromyrmex echinatior]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 142/167 (85%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL LA++ ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LAK++TPNHK LRIPK++
Sbjct: 1330 QLDLARVVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLAKVVTPNHKDLRIPKVY 1389

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ S   +PAADDLIPVLVY
Sbjct: 1390 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMASERGIPAADDLIPVLVY 1449

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLSTVQYV+SFY N++EGE QYWW QFCSAIEFIKTMD
Sbjct: 1450 VIIKTNPPSLLSTVQYVDSFYGNRLEGEEQYWWTQFCSAIEFIKTMD 1496

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196597|gb|EFN78103.1| GTPase-activating protein and VPS9 domain-containing protein 1 [Harpegnathos saltator]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 115/174 (66%), Positives = 145/174 (83%), Gaps = 2/174 (1%)

Query: 43   YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
            +  +++ QL LA+  ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LAK++TPNHK 
Sbjct: 1366 WQSASTSQLDLARAVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLAKVVTPNHKD 1425

Query: 103  LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADD 160
            LRIPK++H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ S   +PAADD
Sbjct: 1426 LRIPKVYHYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMASERGIPAADD 1485

Query: 161  LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            LIPVLVYV+IK NPPSLLSTVQYV+SFY N++EGE QYWW QFCSAIEFIKTMD
Sbjct: 1486 LIPVLVYVIIKTNPPSLLSTVQYVDSFYGNRLEGEEQYWWTQFCSAIEFIKTMD 1539

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787043|gb|EFZ13267.1| hypothetical protein SINV_11752 [Solenopsis invicta]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            Q  LA++ ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LAK++TPNHK LRIPK++
Sbjct: 1360 QFDLARVVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLAKVVTPNHKDLRIPKVY 1419

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ S   +PAADDLIPVLVY
Sbjct: 1420 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMASERGIPAADDLIPVLVY 1479

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLSTVQYV+SFY N++EGE QYWW QFCSAIEFIKTMD
Sbjct: 1480 VIIKTNPPSLLSTVQYVDSFYGNRLEGEEQYWWTQFCSAIEFIKTMD 1526

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865470|ref|XP_003708196.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein and VPS9 domain-containing protein 1-like [Megachile rotundata]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL+LA+  ++R V++R Y  A+YPNGDGD+ RDQ+LH+H++ LAK++TPNHK LRIPKM+
Sbjct: 1425 QLALARAVVERTVMARVYHNALYPNGDGDLYRDQLLHDHIRKLAKVVTPNHKDLRIPKMY 1484

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ +   VPAADD IPVLVY
Sbjct: 1485 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMATERGVPAADDFIPVLVY 1544

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLST+QYV+SFY N++EGE QYWW QFCSAIEFIKTMD
Sbjct: 1545 VIIKTNPPSLLSTIQYVDSFYGNRLEGEEQYWWTQFCSAIEFIKTMD 1591

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170869|gb|EFN62980.1| GTPase-activating protein and VPS9 domain-containing protein 1 [Camponotus floridanus]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 142/167 (85%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL LA++ ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LA++++PNHK LRIPK++
Sbjct: 1364 QLDLARVVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLARVVSPNHKDLRIPKVY 1423

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ S   +PAADDLIPVLVY
Sbjct: 1424 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMASERGIPAADDLIPVLVY 1483

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLSTVQYV+SFY N++EGE QYWW QFCSAIEFIKTMD
Sbjct: 1484 VIIKTNPPSLLSTVQYVDSFYGNRLEGEEQYWWTQFCSAIEFIKTMD 1530

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023826|ref|XP_003695712.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein and VPS9 domain-containing protein 1-like [Apis florea]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL+LA+  ++R V++R Y  A+YPNGDGDI RDQ+LH+H+K LAK++TPNHK LRIPK++
Sbjct: 1387 QLNLARAVVERTVMARVYHNALYPNGDGDIYRDQLLHDHIKKLAKVVTPNHKDLRIPKIY 1446

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ +   VPAADDLIPVLVY
Sbjct: 1447 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMATERGVPAADDLIPVLVY 1506

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLST+QYV+SFY N++ GE QYWW QFCSAIEFIKTMD
Sbjct: 1507 VIIKTNPPSLLSTIQYVDSFYGNRLGGEEQYWWTQFCSAIEFIKTMD 1553

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711667|ref|XP_003394393.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein and VPS9 domain-containing protein 1-like [Bombus terrestris]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL+LA++ ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LA ++TPNHK LRIPK++
Sbjct: 1388 QLNLARVVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLANVVTPNHKDLRIPKIY 1447

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ +   VPAADDLIPVLVY
Sbjct: 1448 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMATERGVPAADDLIPVLVY 1507

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLSTVQYV+SFY N++ GE QYWW QFCSAIEFIKTMD
Sbjct: 1508 VIIKTNPPSLLSTVQYVDSFYGNRLGGEEQYWWTQFCSAIEFIKTMD 1554

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405929|ref|XP_003487596.1| PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1-like [Bombus impatiens]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 141/167 (84%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL+LA++ ++R V++R Y  A+YPNGDGD+ RDQ+LH+H+K LA ++TPNHK LRIPK++
Sbjct: 1392 QLNLARVVVERTVMARVYHNALYPNGDGDVYRDQLLHDHIKKLANVVTPNHKDLRIPKIY 1451

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ +   VPAADDLIPVLVY
Sbjct: 1452 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMATERGVPAADDLIPVLVY 1511

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLST+QYV+SFY N++ GE QYWW QFCSAIEFIKTMD
Sbjct: 1512 VIIKTNPPSLLSTIQYVDSFYGNRLGGEEQYWWTQFCSAIEFIKTMD 1558

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485446|ref|XP_001605902.2| PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1-like [Nasonia vitripennis]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 138/167 (82%), Gaps = 2/167 (1%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            QL LA+  ++R +++  Y  A+YPNGDGDI RD V H+H+K LAK++TPNHK LRIPK++
Sbjct: 1410 QLELARTVVERTLMAAVYQNALYPNGDGDIHRDHVFHDHIKKLAKLVTPNHKDLRIPKIY 1469

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVY 167
            H ECPWP AQAE++ IS+YKT  DK+QCV+R   TI+NLLS+ S   +PAADDLIPVLVY
Sbjct: 1470 HYECPWPWAQAELAVISAYKTPRDKLQCVFRCATTIMNLLSMASERGIPAADDLIPVLVY 1529

Query: 168  VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            V+IK NPPSLLST+QYVNSFY N++EGE QYWW QFCSA+EFIKTMD
Sbjct: 1530 VIIKTNPPSLLSTIQYVNSFYGNRLEGEEQYWWTQFCSAVEFIKTMD 1576

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723486|ref|XP_003247854.1| PREDICTED: GTPase-activating protein and VPS9 domain-containing protein 1-like [Acyrthosiphon pisum]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 136/169 (80%), Gaps = 4/169 (2%)

Query: 50   QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
            Q+  AK+ I+RA+ISR Y  AMYPNGD D  RDQVL EH+ NL+K + P H  LRIPK F
Sbjct: 1282 QIDDAKLTIERAIISRVYTLAMYPNGDADFYRDQVLREHMSNLSKNLVPTHNDLRIPKEF 1341

Query: 110  HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLT----SAVPAADDLIPVL 165
            H ECPWP+AQAEIS+IS+YKT  DK+QCV+R   T+LNL+S+     +  PAADD++PVL
Sbjct: 1342 HFECPWPSAQAEISAISAYKTPKDKLQCVFRCTTTLLNLMSMAGEHGNMHPAADDIVPVL 1401

Query: 166  VYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
            VYVLIKANPPSLLSTVQY+NSFY +++EGE  YWW+QFC+AIEFIKTM+
Sbjct: 1402 VYVLIKANPPSLLSTVQYINSFYGDRLEGEEHYWWIQFCAAIEFIKTMN 1450

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
UNIPROTKB|E1C268	1440	GAPVD1 "Uncharacterized protei	0.792	0.119	0.545	3.2e-50
UNIPROTKB|A5D794	1413	GAPVD1 "GTPase-activating prot	0.792	0.121	0.534	7e-49
UNIPROTKB|E2RA33	1416	GAPVD1 "Uncharacterized protei	0.792	0.121	0.534	9.1e-49
MGI|MGI:1913941	1458	Gapvd1 "GTPase activating prot	0.792	0.117	0.534	1e-48
UNIPROTKB|E2RA13	1460	GAPVD1 "Uncharacterized protei	0.792	0.117	0.534	1e-48
RGD|1307479	1463	Gapvd1 "GTPase activating prot	0.792	0.117	0.534	1e-48
UNIPROTKB|E2RA32	1480	GAPVD1 "Uncharacterized protei	0.792	0.116	0.534	1.1e-48
ZFIN|ZDB-GENE-040718-117	1472	gapvd1 "GTPase activating prot	0.760	0.112	0.532	3.6e-48
UNIPROTKB|F8W9S7	1412	GAPVD1 "GTPase-activating prot	0.792	0.121	0.534	5.4e-48
UNIPROTKB|Q14C86	1478	GAPVD1 "GTPase-activating prot	0.792	0.116	0.534	5.9e-48

UNIPROTKB|E1C268 GAPVD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 522 (188.8 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
 Identities = 95/174 (54%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NHK 
Sbjct:  1264 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHKA 1323

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1324 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1383

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYAN + GE  YWW+QF +A+EFIKT+D
Sbjct:  1384 FVPVLVFVLIKANPPCLLSTVQYISSFYANCLSGEESYWWMQFTAAVEFIKTID 1437

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032794 "GTPase activating protein binding" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=IEA

UNIPROTKB|A5D794 GAPVD1 "GTPase-activating protein and VPS9 domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 515 (186.3 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1237 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1296

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1297 LQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1356

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1357 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1410

GO:0051223 "regulation of protein transport" evidence=ISS

GO:0032794 "GTPase activating protein binding" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E2RA33 GAPVD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 514 (186.0 bits), Expect = 9.1e-49, Sum P(2) = 9.1e-49
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1240 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1299

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1300 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1359

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1360 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1413

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

MGI|MGI:1913941 Gapvd1 "GTPase activating protein and VPS9 domains 1" [Mus musculus (taxid:10090)]

 Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1282 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1341

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1342 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1401

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1402 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1455

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO;IMP

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006897 "endocytosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032794 "GTPase activating protein binding" evidence=ISO;IMP

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=ISO;IMP

UNIPROTKB|E2RA13 GAPVD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1284 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1343

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1344 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1403

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1404 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1457

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

RGD|1307479 Gapvd1 "GTPase activating protein and VPS9 domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1287 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1346

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1347 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1406

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1407 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1460

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0032794 "GTPase activating protein binding" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=ISO

UNIPROTKB|E2RA32 GAPVD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 514 (186.0 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1304 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1363

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1364 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1423

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1424 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1477

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-040718-117 gapvd1 "GTPase activating protein and VPS9 domains 1" [Danio rerio (taxid:7955)]

 Score = 505 (182.8 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
 Identities = 89/167 (53%), Positives = 126/167 (75%)

Query:    50 QLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMF 109
             QL  A++AI+R+V++R +  A YPN DGDI RD++ HEH++ L+++++ NHK L+IP+++
Sbjct:  1303 QLQDAQMAIERSVMNRIFKLAFYPNQDGDIHRDELFHEHIQRLSRVVSANHKALQIPEVY 1362

Query:   110 HSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADDLIPVLVY 167
               E PWP+AQAEI +I++YKT  DKVQC+ R               AVP ADD +PVLV+
Sbjct:  1363 LKEAPWPSAQAEIKTINAYKTPRDKVQCILRMCSTIMNLLSLANEDAVPGADDFVPVLVF 1422

Query:   168 VLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
             VLIKANPP LLST+QY+N+FYA+++ GE  YWW+QF +A+EFIKT+D
Sbjct:  1423 VLIKANPPCLLSTIQYINNFYASRLSGEECYWWMQFTAAVEFIKTID 1469

GO:0005622 "intracellular" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F8W9S7 GAPVD1 "GTPase-activating protein and VPS9 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 514 (186.0 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1236 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1295

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1296 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1355

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1356 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1409

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q14C86 GAPVD1 "GTPase-activating protein and VPS9 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 514 (186.0 bits), Expect = 5.9e-48, P = 5.9e-48
 Identities = 93/174 (53%), Positives = 130/174 (74%)

Query:    43 YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
             + +++  QL  A++AI+R+V++R +  A YPN DGDI RDQVLHEH++ L+K++T NH+ 
Sbjct:  1302 WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRA 1361

Query:   103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR--XXXXXXXXXXXXXAVPAADD 160
             L+IP+++  E PWP+AQ+EI +IS+YKT  DKVQC+ R               +VP ADD
Sbjct:  1362 LQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADD 1421

Query:   161 LIPVLVYVLIKANPPSLLSTVQYVNSFYANKMEGEIQYWWVQFCSAIEFIKTMD 214
              +PVLV+VLIKANPP LLSTVQY++SFYA+ + GE  YWW+QF +A+EFIKT+D
Sbjct:  1422 FVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTID 1475

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IMP

GO:0051223 "regulation of protein transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PAR5	GAPD1_MOUSE	No assigned EC number	0.5649	0.8064	0.1200	yes	N/A
Q14C86	GAPD1_HUMAN	No assigned EC number	0.5649	0.8064	0.1184	yes	N/A
A5D794	GAPD1_BOVIN	No assigned EC number	0.5649	0.8064	0.1238	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	2e-31
smart00167	117	smart00167, VPS9, Domain present in VPS9	2e-22

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score =  110 bits (277), Expect = 2e-31
 Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 115 WPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYVLIKA 172
           W  AQ E+  ++  K+  +K++C+ RT   I   LS ++      ADDL+P+L+YVLIKA
Sbjct: 1   WEKAQEELKKLNEAKSPREKLKCLLRTCKLITEALSKSNPGEPLGADDLLPILIYVLIKA 60

Query: 173 NPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMD 214
           NPP+L S +Q+++ F   + + GE  Y+     +A+EFI+ +D
Sbjct: 61  NPPNLYSNLQFISLFRDPDLLSGEEGYYLTTLEAALEFIENLD 103

Length = 104

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 114 PWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVPAADDLIPVLVYVLIKA 172
                Q E+  +  YK+  DK++C+ R    I  LL   S  V  ADD +PVL+YV+IK 
Sbjct: 1   FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGADDFLPVLIYVIIKC 60

Query: 173 NPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTM 213
           +P  LL   +Y+  F   + + GE  Y+     +A+  IK +
Sbjct: 61  DPRDLLLNAEYMEEFLEPSLLTGEGGYYLTSLSAALALIKGL 102

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	100.0
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.96
KOG2320|consensus	651		99.81
KOG2319|consensus	477		99.19
KOG2319|consensus	477		99.16

>smart00167 VPS9 Domain present in VPS9

Probab=100.00  E-value=2.1e-36  Score=230.01  Aligned_cols=103  Identities=33%  Similarity=0.595  Sum_probs=97.7

Q ss_pred             ChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhcCC-CCCCchhhhHHHHHHHHhcCCCChhhHHHHHHhhcc-Cc
Q psy5853         114 PWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NK  191 (217)
Q Consensus       114 ~~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~~~-~~~~ADd~LPiliyviika~~~~l~s~i~yI~~f~~-~~  191 (217)
                      +|+.|+.+|++||.++||+|||.||++||+.|++.++... .++|||||||+||||||||+||+++||++||++|++ +.
T Consensus         1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~~~~~   80 (117)
T smart00167        1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFLEPSL   80 (117)
T ss_pred             CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHCCccc
Confidence            6999999999999999999999999999999999998654 679999999999999999999999999999999997 67


Q ss_pred             cCChhHHHHHHHHHHHHHHhccCCC
Q psy5853         192 MEGEIQYWWVQFCSAIEFIKTMDYK  216 (217)
Q Consensus       192 ~~gE~~Y~lt~l~aAv~fI~~l~~~  216 (217)
                      +.||.|||||||+||++||++++.+
T Consensus        81 l~gE~gY~lT~l~aAv~fi~~l~~~  105 (117)
T smart00167       81 LTGEGGYYLTSLSAALALIKGLTEA  105 (117)
T ss_pred             cccHHHHHHHHHHHHHHHHHHCCHH
Confidence            8999999999999999999999864

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.96  E-value=7.5e-29  Score=184.37  Aligned_cols=101  Identities=35%  Similarity=0.749  Sum_probs=85.8

Q ss_pred             hHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhh--cCCCCCCchhhhHHHHHHHHhcCCCChhhHHHHHHhhcc-Cc
Q psy5853         115 WPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLS--LTSAVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NK  191 (217)
Q Consensus       115 ~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~--~~~~~~~ADd~LPiliyviika~~~~l~s~i~yI~~f~~-~~  191 (217)
                      |++|+++|++|+..+||.+|+.||.++++.|.+.+.  ..+..+||||+||+++||++||++++++|+++||+.|+. +.
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~~~~   80 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKTSKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFIDSSL   80 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHHHCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCCT
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHccccc
Confidence            789999999999999999999999999999999992  223789999999999999999999999999999999986 66


Q ss_pred             cCChhHHHHHHHHHHHHHHhccCC
Q psy5853         192 MEGEIQYWWVQFCSAIEFIKTMDY  215 (217)
Q Consensus       192 ~~gE~~Y~lt~l~aAv~fI~~l~~  215 (217)
                      +.||.||++|||++|++||++++.
T Consensus        81 ~~~e~~y~ltt~~aA~~~i~~~~~  104 (104)
T PF02204_consen   81 LSGEEGYYLTTFEAAVEYIQNLEF  104 (104)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHC---
T ss_pred             cCCHHHHHHHHHHHHHHHHHHccC
Confidence            799999999999999999999873

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG2320|consensus

Probab=99.81  E-value=2.5e-19  Score=164.19  Aligned_cols=198  Identities=16%  Similarity=0.187  Sum_probs=153.3

Q ss_pred             CCCCcHHHHHHHHHHhhHh--HhhcCc------ccCCCCHHHHHHHHH-HHHHHHHHHhHHhhcCCCCCCCchhhHHHHH
Q psy5853          17 QGGGTAEYRRRTYEFVDNN--RRDYRS------GYSDSNSVQLSLAKI-AIDRAVISRCYMYAMYPNGDGDISRDQVLHE   87 (217)
Q Consensus        17 ~~~~~~~~~~~~~~f~~~~--~~~~~~------~~~~~~~~~~~~~~~-~lE~~V~~~iy~~if~~~~~~~~~~D~~l~~   87 (217)
                      +....+.+.+.|++||+..  -+..++      .-...++.++|.+.| ++.+.|+..+-..+...... ...+|..|++
T Consensus       297 ~~td~a~mL~~iRq~lt~~k~yL~qs~e~~~~v~~~~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l~~-~h~~dGsl~~  375 (651)
T KOG2320|consen  297 RPTDSASMLQSIRQALTRRKNYLSQSPELDTPVQPSLLSETPLEAVLESALHKSVLKPLKPNLSAQLPP-VHSKDGSLQQ  375 (651)
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHhhcCCCCCCccccccCcchHHHHHHHHHHHhhccccchhHhhhcch-hhhhccHHHH
Confidence            3344577888999999874  122222      222346677887766 77888888777666655442 4578888887


Q ss_pred             HHHHhhcccCCCCcccccCCCCCCCCChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhcCC--CCCCchhhhHHH
Q psy5853          88 HVKNLAKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVL  165 (217)
Q Consensus        88 ~i~~L~~~i~p~~l~l~I~~~~~~~~~~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~~~--~~~~ADd~LPil  165 (217)
                      .-+++.-+.+..--++|+--.......+++....+.+|.+.++|..|+..++++||.|+..+...+  ...|||||+|+|
T Consensus       376 l~en~~vvr~~~~~~lG~~~~~Ps~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~ckLly~~~~~~~~g~~~gaDdflP~l  455 (651)
T KOG2320|consen  376 LKENQDVVRAANPTALGVFLSTPSDVLMEQVKQKFTAMQRRYSPSKKLHALLKACKLLYAGMGGDNEGLAYGADDFLPVL  455 (651)
T ss_pred             HhcccceecccCccccceeccCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHH
Confidence            777766553323334666333333445788888999999999999999999999999999987433  789999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHhhcc-CccCChhHHHHHHHHHHHHHHhccCC
Q psy5853         166 VYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFIKTMDY  215 (217)
Q Consensus       166 iyviika~~~~l~s~i~yI~~f~~-~~~~gE~~Y~lt~l~aAv~fI~~l~~  215 (217)
                      .||+.|++.+.+..+++||++|.+ +.+.||.|||+|++.+|++.|++++.
T Consensus       456 syvla~s~~~e~~~e~eYM~ELLdP~l~~geggYYLTs~~~al~~iks~~~  506 (651)
T KOG2320|consen  456 SYVLARSDLQELLTEAEYMMELLDPDLLSGEGGYYLTSLYGALEHIKSLGR  506 (651)
T ss_pred             HHHHHhcchhcchHHHHHHHHhcChhhhcCccchhHHHHHHHHHHHhcccc
Confidence            999999999999999999999996 77799999999999999999998863

>KOG2319|consensus

Probab=99.19  E-value=1e-10  Score=108.53  Aligned_cols=159  Identities=23%  Similarity=0.349  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHhHHhhcCCCCCCCchhhHHHHHHHHHhhcccCCCCcccccCCCCC---CCCChHHHHHHHhcccCC
Q psy5853          52 SLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFH---SECPWPAAQAEISSISSY  128 (217)
Q Consensus        52 ~~~~~~lE~~V~~~iy~~if~~~~~~~~~~D~~l~~~i~~L~~~i~p~~l~l~I~~~~~---~~~~~~~a~~~L~~i~~~  128 (217)
                      ......++......++..++.+....+.++|..++..++.++++ +++.  ++|+..-.   .+.....+...+..|+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l-~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  252 (477)
T KOG2319|consen  176 NKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGL-TSQM--LDIPVLEQIPELSKRVALASQRLALIREL  252 (477)
T ss_pred             HHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhccc-chhh--ccccccccccchhHHHHHHHHHHHHHHHh
Confidence            34455677778888888888887777889999999999999999 7776  45553222   122467888899999999


Q ss_pred             CCHHH-HHHHHHHHHHHHHHHhhcCC-CCCCchhhhHHHHHHHHhcCCCChhhHHHHHHhhcc-CccCChhHHHHHHHHH
Q psy5853         129 KTAHD-KVQCVYRTLNTILNLLSLTS-AVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCS  205 (217)
Q Consensus       129 ~sP~d-Kl~~i~~~~k~I~~~i~~~~-~~~~ADd~LPiliyviika~~~~l~s~i~yI~~f~~-~~~~gE~~Y~lt~l~a  205 (217)
                      ..|++ |..|.++|++.|+..++... ...++|.|+|.++|.+++++++++.++++|+.+|+. ..+.|+.+|++.++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~  332 (477)
T KOG2319|consen  253 LTPRDKKEACALNCEKPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYAC  332 (477)
T ss_pred             hcchhhhHHHHHHHHHHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhh
Confidence            99999 79999999999999999877 789999999999999999999999999999999997 7889999999999988


Q ss_pred             HHHHHhcc
Q psy5853         206 AIEFIKTM  213 (217)
Q Consensus       206 Av~fI~~l  213 (217)
                      +-.++...
T Consensus       333 ~~~~~~~~  340 (477)
T KOG2319|consen  333 ASSDIFDA  340 (477)
T ss_pred             hhhhhhhh
Confidence            88777543

>KOG2319|consensus

Probab=99.16  E-value=9.7e-12  Score=115.40  Aligned_cols=180  Identities=26%  Similarity=0.224  Sum_probs=153.8

Q ss_pred             HhhcCcccCCCCHHHHHHHHHHHHHHHHHHhHHhhcCCCCCCCchhhHHHHHHHHHhhcccCCCCcccccCCCCCCCCCh
Q psy5853          36 RRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPW  115 (217)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~lE~~V~~~iy~~if~~~~~~~~~~D~~l~~~i~~L~~~i~p~~l~l~I~~~~~~~~~~  115 (217)
                      .+.....|...++.+......++|+......|...+.++...+...+..++..+..++.+.+ .|....++.....+.+|
T Consensus       294 ~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~~~-~~~~~~~~~~~~~e~~~  372 (477)
T KOG2319|consen  294 CLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASSDIFDATLLSLTISSLQDFAR-EHTAYESEEVSLREEEV  372 (477)
T ss_pred             HHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhhhhhhhhhhhcccchhhhhhh-hccchhhhhhhhccCcc
Confidence            45555677777788888888899999999999998888766666777777777777777644 55555666656667789


Q ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhcCC--CCCCchhhhHHHHHHHHhcCCCChhhHHHHHHhhccCcc-
Q psy5853         116 PAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS--AVPAADDLIPVLVYVLIKANPPSLLSTVQYVNSFYANKM-  192 (217)
Q Consensus       116 ~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~~~--~~~~ADd~LPiliyviika~~~~l~s~i~yI~~f~~~~~-  192 (217)
                      ..+..++..++.+.+|.+|+.|.+++++.|.+....+.  ...++||+.|+..+|.++++|+.+.++++|++.|..+.. 
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~s~~~~v~~~~d~~~~~~~v~ik~~p~~~~sl~q~~~~~~~s~~~  452 (477)
T KOG2319|consen  373 PSASPDLRSLDDEFTKNLKLLCDVRLRSAINNLLYASLSSPVADADDPSAVEGSVSIKPNPLEILSLVQKIEEFDGSSLE  452 (477)
T ss_pred             cccchhhhccchhhcCCcccccchhhhhhhccchhhcccCcccccccccchheeecccCCchhhhhhhhhhccccccccc
Confidence            99999999999999999999999999999998877654  678999999999999999999999999999999987655 


Q ss_pred             CChhHHHHHHHHHHHHHHhccCCC
Q psy5853         193 EGEIQYWWVQFCSAIEFIKTMDYK  216 (217)
Q Consensus       193 ~gE~~Y~lt~l~aAv~fI~~l~~~  216 (217)
                      .|+..|++..+.+|+++|++++.+
T Consensus       453 ~g~~~~~~~~~~~a~~~~k~~~~~  476 (477)
T KOG2319|consen  453 PGEDSLLPSLFKRAAENIKTFNKS  476 (477)
T ss_pred             ccchhhccccchhHHHhccccccC
Confidence            699999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2efc_A	267	Ara7-GdpATVPS9A Length = 267		2e-15
2efh_A	267	Ara7-GdpATVPS9A(D185N) Length = 267		7e-15
2ot3_A	274	Crystal Structure Of Rabex-5 Vps9 Domain In Complex		1e-13
1txu_A	273	Crystal Structure Of The Vps9 Domain Of Rabex-5 Len		2e-12

>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A Length = 267

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
           +S  +  +L  A   +++ V+++ +      N +  I+ D+ L + +  + + I+P +  
Sbjct: 69  WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIA-DEKLFQKMSLVQQFISPEN-- 125
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XXXXXXXXXXXXXAVPA 157
           L I   F +E  W  AQ E+  I+ YK   DK+ C+                      P 
Sbjct: 126 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 185
Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
           AD+ +PVL+YV IKANPP L S + Y+  +   +K+ GE  Y++    SA  FI  +D K
Sbjct: 186 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 245

>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N) Length = 267

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
           +S  +  +L  A   +++ V+++ +      N + ++  D+ L + +  + + I+P +  
Sbjct: 69  WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPEN-- 125
Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYR-----XXXXXXXXXXXXXAVPA 157
           L I   F +E  W  AQ E+  I+ YK   DK+ C+                      P 
Sbjct: 126 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 185
Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
           A++ +PVL+YV IKANPP L S + Y+  +   +K+ GE  Y++    SA  FI  +D K
Sbjct: 186 ANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 245

>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With Nucleotide Free Rab21 Length = 274

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 58  IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
           I++ +++R Y Y   P    D  +D  + + ++ L + +TP  + L +P   + + P  +
Sbjct: 88  IEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QMLCVP--VNEDIPEVS 142
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
                A  +I  + S +   DK+ C+ +               PA ADD +P L+Y+++K
Sbjct: 143 DMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 202
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
            NPP L S +QY+  F   +  M GE  Y++   C A+ FI+ +D
Sbjct: 203 GNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 247

>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5 Length = 273

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 58  IDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKYLRIPKMFHSECPWPA 117
           I++ + +R Y Y   P    D  +D  + + ++ L + +TP  + L +P   + + P  +
Sbjct: 90  IEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTP--QXLCVP--VNEDIPEVS 144
Query: 118 -----AQAEISSISSYKTAHDKVQCVYRXXXXXXXXXXXXXAVPA-ADDLIPVLVYVLIK 171
                A  +I    S +   DK+ C+ +               PA ADD +P L+Y+++K
Sbjct: 145 DXVVKAITDIIEXDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLK 204
Query: 172 ANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMD 214
            NPP L S +QY+  F   +    GE  Y++   C A+ FI+ +D
Sbjct: 205 GNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLD 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2efe_A	267	Similarity to vacuolar protein sorting-associated	2e-40
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	6e-38

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  138 bits (348), Expect = 2e-40
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
           +S  +  +L  A   +++ V+++ +      N + ++  D+ L + +  + + I+P +  
Sbjct: 69  WSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEKLFQKMSLVQQFISPEN-- 125

Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLL-----SLTSAVPA 157
           L I   F +E  W  AQ E+  I+ YK   DK+ C+      I NLL     +     P 
Sbjct: 126 LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPG 185

Query: 158 ADDLIPVLVYVLIKANPPSLLSTVQYVNSF-YANKMEGEIQYWWVQFCSAIEFIKTMDYK 216
           AD+ +PVL+YV IKANPP L S + Y+  +   +K+ GE  Y++    SA  FI  +D K
Sbjct: 186 ADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK 245

Query: 217 E 217
            
Sbjct: 246 S 246

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  131 bits (331), Expect = 6e-38
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 38  DYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIIT 97
           +           ++      I++ +++R Y Y   P    D  +D  + + ++ L  + T
Sbjct: 68  ERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWV-T 126

Query: 98  PNHKYLRIPKMF-HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVP 156
           P    + + +           A  +I  + S +   DK+ C+ +    I N + +T   P
Sbjct: 127 PQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEP 186

Query: 157 A-ADDLIPVLVYVLIKANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTM 213
           A ADD +P L+Y+++K NPP L S +QY+  F   +  M GE  Y++   C A+ FI+ +
Sbjct: 187 ASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKL 246

Query: 214 DYKE 217
           D + 
Sbjct: 247 DAQS 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=7.4e-50  Score=343.15  Aligned_cols=206  Identities=29%  Similarity=0.479  Sum_probs=189.8

Q ss_pred             CcccccccccCCCCcHHHHHHHHHHhhHh--HhhcCcccCCCCHHHHHHHHHHHHHHHHHHhHHhhcCCCCCCCchhhHH
Q psy5853           7 IKPDISNVTGQGGGTAEYRRRTYEFVDNN--RRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQV   84 (217)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~lE~~V~~~iy~~if~~~~~~~~~~D~~   84 (217)
                      |++++.+|.+.....++.++.+++|++.+  .+..|+.|+++++++++.+++++|||||++||+++|++... +.++|..
T Consensus        31 i~~Fi~~f~~~~~~~~e~~~~v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v~~~ly~~lf~~~~~-d~~~D~~  109 (267)
T 2efe_A           31 IKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTE-EVIADEK  109 (267)
T ss_dssp             HHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHSCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHSSCSHH-HHHHHHH
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCchh-hHHHHHH
Confidence            56777888888888899999999999975  78899999999999999999999999999999999998753 7889999


Q ss_pred             HHHHHHHh-hcccCCCCcccccCCCCCCCCChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhc-----CCCCCCc
Q psy5853          85 LHEHVKNL-AKIITPNHKYLRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSL-----TSAVPAA  158 (217)
Q Consensus        85 l~~~i~~L-~~~i~p~~l~l~I~~~~~~~~~~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~-----~~~~~~A  158 (217)
                      |++||+.| +++ +|+|  ||||+.+..+.+|..|+++|++|+.++||+|||.||++||+.|++.++.     .+.++||
T Consensus       110 L~~ki~~l~~~i-~~~~--L~I~~~~~~~~~~~~A~~eL~ki~~~~sP~dKl~~l~~~~k~I~~~l~~~~~~~~~~~~~A  186 (267)
T 2efe_A          110 LFQKMSLVQQFI-SPEN--LDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGA  186 (267)
T ss_dssp             HHHHHHHHTTTC-CGGG--GTCCGGGCCTTCSHHHHHHHHTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCH
T ss_pred             HHHHHHHHHccC-CHHH--cCCCCccCCcccHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCCh
Confidence            99999999 576 9998  7889888888899999999999999999999999999999999998863     2378999


Q ss_pred             hhhhHHHHHHHHhcCCCChhhHHHHHHhhcc-CccCChhHHHHHHHHHHHHHHhccCCC
Q psy5853         159 DDLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NKMEGEIQYWWVQFCSAIEFIKTMDYK  216 (217)
Q Consensus       159 Dd~LPiliyviika~~~~l~s~i~yI~~f~~-~~~~gE~~Y~lt~l~aAv~fI~~l~~~  216 (217)
                      |||||+||||||||+||+|+||++||++|++ +.+.||.|||||||+||++||++++.+
T Consensus       187 Dd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~  245 (267)
T 2efe_A          187 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAK  245 (267)
T ss_dssp             HHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHh
Confidence            9999999999999999999999999999996 677999999999999999999999976

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=2.5e-46  Score=322.19  Aligned_cols=204  Identities=25%  Similarity=0.456  Sum_probs=180.8

Q ss_pred             Cccccccccc-CCCCcHHHHHHHHHHhhHh--HhhcCcccCCCCHHHHHHHHHHHHHHHHHHhHHhhcCCCCCCCchhhH
Q psy5853           7 IKPDISNVTG-QGGGTAEYRRRTYEFVDNN--RRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQ   83 (217)
Q Consensus         7 ~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~lE~~V~~~iy~~if~~~~~~~~~~D~   83 (217)
                      |++|+.+|.+ +....++.++.+++|+...  ++..+  |+. ++++++.+++++|+|||++||+.+|++..+.+..+|.
T Consensus        37 i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~  113 (274)
T 2ot3_A           37 TKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQTR--GKV-PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDL  113 (274)
T ss_dssp             HHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHST--TCC-CHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--hcc-CHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHH
Confidence            5778888875 4678899999999999875  56555  886 6789999999999999999999999998877889999


Q ss_pred             HHHHHHHHhhcccCCCCcccccCCCCCC---CCChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhcCC-CCCCch
Q psy5853          84 VLHEHVKNLAKIITPNHKYLRIPKMFHS---ECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVPAAD  159 (217)
Q Consensus        84 ~l~~~i~~L~~~i~p~~l~l~I~~~~~~---~~~~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~~~-~~~~AD  159 (217)
                      .|+++|+.|+++ +|+|  ||||.....   ...|..|+++|++|+.++||+|||.||++||+.|++.++.++ .++|||
T Consensus       114 ~l~~ki~~L~~i-~~~~--L~I~~~~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL~~l~~~~k~I~~~l~~~~~~~~~AD  190 (274)
T 2ot3_A          114 AIQKRIRALRWV-TPQM--LCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASAD  190 (274)
T ss_dssp             HHHHHHHHTTTC-CTTT--TTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHHHSSCBCHH
T ss_pred             HHHHHHHHHcCC-CHHH--cCCCcccCCchHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence            999999999998 9999  556654421   135899999999999999999999999999999999997654 689999


Q ss_pred             hhhHHHHHHHHhcCCCChhhHHHHHHhhcc-Cc-cCChhHHHHHHHHHHHHHHhccCCC
Q psy5853         160 DLIPVLVYVLIKANPPSLLSTVQYVNSFYA-NK-MEGEIQYWWVQFCSAIEFIKTMDYK  216 (217)
Q Consensus       160 d~LPiliyviika~~~~l~s~i~yI~~f~~-~~-~~gE~~Y~lt~l~aAv~fI~~l~~~  216 (217)
                      ||||+||||||||+||+|+||++||++|++ +. +.||.|||||||+||++||++++.+
T Consensus       191 d~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~  249 (274)
T 2ot3_A          191 DFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ  249 (274)
T ss_dssp             HHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTG
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhCCHH
Confidence            999999999999999999999999999997 44 4899999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	4e-46

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  151 bits (382), Expect = 4e-46
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 3/178 (1%)

Query: 43  YSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLHEHVKNLAKIITPNHKY 102
                  ++      I++ +++R Y Y   P    D  +D  + + ++ L  +       
Sbjct: 58  RGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCV 117

Query: 103 LRIPKMFHSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTSAVPA-ADDL 161
                +         A  +I  + S +   DK+ C+ +    I N + +T   PA ADD 
Sbjct: 118 PVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDF 177

Query: 162 IPVLVYVLIKANPPSLLSTVQYVNSFY--ANKMEGEIQYWWVQFCSAIEFIKTMDYKE 217
           +P L+Y+++K NPP L S +QY+  F   +  M GE  Y++   C A+ FI+ +D + 
Sbjct: 178 LPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQS 235

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=323.30  Aligned_cols=207  Identities=23%  Similarity=0.435  Sum_probs=179.7

Q ss_pred             ccccccc-ccCCCCcHHHHHHHHHHhhHhHhhcCcccCCCCHHHHHHHHHHHHHHHHHHhHHhhcCCCCCCCchhhHHHH
Q psy5853           8 KPDISNV-TGQGGGTAEYRRRTYEFVDNNRRDYRSGYSDSNSVQLSLAKIAIDRAVISRCYMYAMYPNGDGDISRDQVLH   86 (217)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lE~~V~~~iy~~if~~~~~~~~~~D~~l~   86 (217)
                      +.+++++ ..+....++..+.+++|++...- .-..|.+.++++++.+++++|||||++||+++|++..+.+.++|..|+
T Consensus        23 ~~Fi~~~~~~~~~~~~e~~~~i~~f~~~~~~-~l~~~~~~~~~~~~~~~~~vEk~i~~~ly~~~f~~~~~~~~~~D~~l~  101 (249)
T d2ot3a1          23 KLFLEGMHYKRDLSIEEQSECAQDFYHNVAE-RMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ  101 (249)
T ss_dssp             HHHHHHHHTTTTSCHHHHHHHHHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Confidence            4556666 44667789999999999987521 225688889999999999999999999999999998888889999999


Q ss_pred             HHHHHhhcccCCCCcccccCCCC-CCCCChHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhcCC-CCCCchhhhHH
Q psy5853          87 EHVKNLAKIITPNHKYLRIPKMF-HSECPWPAAQAEISSISSYKTAHDKVQCVYRTLNTILNLLSLTS-AVPAADDLIPV  164 (217)
Q Consensus        87 ~~i~~L~~~i~p~~l~l~I~~~~-~~~~~~~~a~~~L~~i~~~~sP~dKl~~i~~~~k~I~~~i~~~~-~~~~ADd~LPi  164 (217)
                      ++++.|+++ +|+|+++.+.... ....+|..|+.+|++|+.++||+||+.||++||+.|++.++... .++|||||||+
T Consensus       102 ~~i~~l~~i-~~~~l~i~~~~~~~~~~~~~~~A~~~L~~i~~~~sP~dKl~~i~~~~~~I~~~~~~~~~~~~~ADd~LP~  180 (249)
T d2ot3a1         102 KRIRALRWV-TPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPT  180 (249)
T ss_dssp             HHHHHTTTC-CTTTTTCCCCTTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHHHSSCBCHHHHHHH
T ss_pred             HHHHHhccC-CHHhcCCccccccchhhhHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHH
Confidence            999999998 9999554433221 12356999999999999999999999999999999999987654 78999999999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHhhcc-Cc-cCChhHHHHHHHHHHHHHHhccCCC
Q psy5853         165 LVYVLIKANPPSLLSTVQYVNSFYA-NK-MEGEIQYWWVQFCSAIEFIKTMDYK  216 (217)
Q Consensus       165 liyviika~~~~l~s~i~yI~~f~~-~~-~~gE~~Y~lt~l~aAv~fI~~l~~~  216 (217)
                      |||||+||+||+|+||++||++|++ +. +.||.|||||||+|||+||+++|++
T Consensus       181 liyviika~~~~l~S~i~yI~~F~~~~~l~~gE~~Y~lt~l~aAv~fI~~ld~~  234 (249)
T d2ot3a1         181 LIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ  234 (249)
T ss_dssp             HHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTG
T ss_pred             HHHHHHHcChhhHHHHHHHHHHHhChhhccCcHHHHHHHHHHHHHHHHHhCCHh
Confidence            9999999999999999999999996 54 5899999999999999999999976