Psyllid ID: psy5867

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MSSKDIFEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAVIR
cccccccccccccHHccccccccccccEEEEcccccccccccccccccccEEEEcccccEEEEEEccccccccEEEEEcccccEEEEEEEcccEEEEEEEEEcccccccccccEEEEEEcccccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEEEEEEEcccccccEEEEEEEEcccccccccccccEEEccEEcccccccccHHHHEEEccccccccEEEEccccccccEEEEEEEEEEEEccccccccEEEEEEEEccccccccccccccEEEEEEEcc
ccccccccccHHHHHHcccEEEcHHHEEEEEcccEccEccHHHHcccccccEEccccccEEEEEEEEEEEEEcEEEEEccccEEEEEEEEEEEEEcEEEEEEEHHHHHHHcEEEEEEEEEccccccEEEEEEEccccEEEEEEEcEcccccEEEEEEEEEEEEEEHHHccccEEcEEEEEEEcccccccccccccccEEEEEEEccccccEEEEEEEccccEEEEEEEcEcccccEEEEEEEEEEEEEEHHHccccEEcEEEEEEEcccccccccccHHHHHHHccc
msskdifekdpvMEERLGRIREVGSQAIWslssckpgfgvdqlrdDCMDtywqsdgqlphlvNVQFRRKTTVQDIciyrqlphlvnvqFRRKTTVQDICIytdykldesytpsrvsvragtnfndlqeievvdlnepsgwvkipikdihdkpiRTYMIQIAVMSnhqngrdthmrqikvyspvqqhpstmfttvECQQVSvragtnfndlqeievvdlnepsgwvkipikdihdkpiRTYMIQIAVMSnhqngrdthmrqikvyspvqqhpstmfttvECQQYAVIR
msskdifekdpvmEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYrqlphlvnvqfrrkttvqDICIYtdykldesytpsrVSVRAGtnfndlqeievvdlnepsgwvkipikdihdKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVvdlnepsgwvkipikdihdKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYspvqqhpstmfttvecQQYAVIR
MSSKDIFEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVkipikdihdkpiRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVkipikdihdkpiRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAVIR
*****************GRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQ*****HMRQIKVYSPVQ***STMFTTVECQQYAV**
******************RIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVM*********************************QQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAVIR
MSSKDIFEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAVIR
******FEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAV**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSKDIFEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMFTTVECQQYAVIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q9V831195 Anaphase-promoting comple yes N/A 0.592 0.871 0.595 3e-65
Q9UM13185 Anaphase-promoting comple yes N/A 0.533 0.827 0.613 3e-61
Q2YDH1185 Anaphase-promoting comple yes N/A 0.533 0.827 0.613 4e-61
Q8K2H6185 Anaphase-promoting comple yes N/A 0.533 0.827 0.607 1e-60
Q9ZPW2192 Anaphase-promoting comple yes N/A 0.533 0.796 0.464 7e-42
Q55ER5188 Anaphase-promoting comple yes N/A 0.512 0.781 0.433 2e-38
O42971189 Anaphase-promoting comple yes N/A 0.501 0.761 0.363 1e-30
P53068250 Anaphase-promoting comple yes N/A 0.505 0.58 0.317 8e-18
>sp|Q9V831|APC10_DROME Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=Apc10 PE=2 SV=2 Back     alignment and function desciption
 Score =  248 bits (634), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 152/198 (76%), Gaps = 28/198 (14%)

Query: 8   EKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFR 67
           E+DP+ EERLG +REVG+QA+WSLSSCKPGFGV++LRD+ MDTYWQSDGQLPHL      
Sbjct: 18  EEDPLAEERLGFVREVGAQAVWSLSSCKPGFGVERLRDNIMDTYWQSDGQLPHL------ 71

Query: 68  RKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQ 127
                            VN+QF ++T +  I IYTDYKLDESYTPSR+S+R+GTNFNDLQ
Sbjct: 72  -----------------VNIQFHKRTNISQIYIYTDYKLDESYTPSRISIRSGTNFNDLQ 114

Query: 128 EIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQ--Q 185
           E++V+DL EP+GWV+IPIKD + K IRT+M+QIAV+SNHQNGRDTHMRQI++++PV+   
Sbjct: 115 ELQVMDLTEPTGWVQIPIKDGNVKSIRTFMLQIAVISNHQNGRDTHMRQIRIHAPVEGKH 174

Query: 186 HPSTM---FTTVECQQVS 200
           +P  +   F TV+ Q+ +
Sbjct: 175 YPLELFGKFGTVDFQKFA 192
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle.
Drosophila melanogaster (taxid: 7227)
>sp|Q9UM13|APC10_HUMAN Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1 Back     alignment and function description
>sp|Q2YDH1|APC10_BOVIN Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1 Back     alignment and function description
>sp|Q8K2H6|APC10_MOUSE Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPW2|APC10_ARATH Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=1 SV=2 Back     alignment and function description
>sp|Q55ER5|APC10_DICDI Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1 Back     alignment and function description
>sp|O42971|APC10_SCHPO Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc10 PE=1 SV=1 Back     alignment and function description
>sp|P53068|APC10_YEAST Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DOC1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
242006722187 anaphase-promoting complex subunit, puta 0.616 0.946 0.650 3e-71
380023096186 PREDICTED: anaphase-promoting complex su 0.536 0.827 0.734 5e-71
340729497189 PREDICTED: anaphase-promoting complex su 0.560 0.851 0.715 7e-71
383859168189 PREDICTED: anaphase-promoting complex su 0.536 0.814 0.723 8e-70
66531676186 PREDICTED: anaphase-promoting complex su 0.536 0.827 0.723 2e-69
307195501189 Anaphase-promoting complex subunit 10 [H 0.536 0.814 0.711 7e-69
91081555185 PREDICTED: similar to anaphase promoting 0.616 0.956 0.653 9e-69
307191142189 Anaphase-promoting complex subunit 10 [C 0.560 0.851 0.682 1e-68
332016291189 Anaphase-promoting complex subunit 10 [A 0.536 0.814 0.700 1e-68
156549338189 PREDICTED: anaphase-promoting complex su 0.529 0.804 0.714 1e-68
>gi|242006722|ref|XP_002424196.1| anaphase-promoting complex subunit, putative [Pediculus humanus corporis] gi|212507537|gb|EEB11458.1| anaphase-promoting complex subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/206 (65%), Positives = 158/206 (76%), Gaps = 29/206 (14%)

Query: 3   SKDIFEKDPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLV 62
           S  + + DP+ EER G++REVGS AIWSLSSCKP FGVDQLRD+CM+TYWQSDGQLPHL 
Sbjct: 5   SGTVSDIDPLTEERAGKVREVGSHAIWSLSSCKPSFGVDQLRDNCMETYWQSDGQLPHL- 63

Query: 63  NVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTN 122
                                 VN+QFR+KTTVQDICIY DYKLDESYTPSR+SVRAGTN
Sbjct: 64  ----------------------VNIQFRKKTTVQDICIYIDYKLDESYTPSRISVRAGTN 101

Query: 123 FNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSP 182
           F DLQE+EV+DLNEP+GW  IP+KDI+DKPIRT+MIQIAV+SNHQNGRDTHMRQIK++SP
Sbjct: 102 FTDLQEVEVIDLNEPTGWFLIPVKDINDKPIRTFMIQIAVISNHQNGRDTHMRQIKIHSP 161

Query: 183 VQQHPSTM-----FTTVECQQ-VSVR 202
           +++   ++     FTT  CQ   SVR
Sbjct: 162 LEKRGMSLNDIGDFTTQFCQMFTSVR 187

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380023096|ref|XP_003695365.1| PREDICTED: anaphase-promoting complex subunit 10-like [Apis florea] Back     alignment and taxonomy information
>gi|340729497|ref|XP_003403037.1| PREDICTED: anaphase-promoting complex subunit 10-like [Bombus terrestris] gi|350411580|ref|XP_003489394.1| PREDICTED: anaphase-promoting complex subunit 10-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383859168|ref|XP_003705068.1| PREDICTED: anaphase-promoting complex subunit 10-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66531676|ref|XP_396738.2| PREDICTED: anaphase-promoting complex subunit 10-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307195501|gb|EFN77387.1| Anaphase-promoting complex subunit 10 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|91081555|ref|XP_975078.1| PREDICTED: similar to anaphase promoting complex subunit 10 [Tribolium castaneum] gi|270005121|gb|EFA01569.1| hypothetical protein TcasGA2_TC007130 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307191142|gb|EFN74840.1| Anaphase-promoting complex subunit 10 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332016291|gb|EGI57204.1| Anaphase-promoting complex subunit 10 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|156549338|ref|XP_001601344.1| PREDICTED: anaphase-promoting complex subunit 10-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
UNIPROTKB|F2Z4G9185 ANAPC10 "Anaphase-promoting co 0.397 0.616 0.598 6.5e-35
UNIPROTKB|E2R745185 ANAPC10 "Uncharacterized prote 0.397 0.616 0.598 6.5e-35
UNIPROTKB|Q9UM13185 ANAPC10 "Anaphase-promoting co 0.397 0.616 0.598 6.5e-35
UNIPROTKB|F1RS48185 ANAPC10 "Uncharacterized prote 0.397 0.616 0.598 6.5e-35
UNIPROTKB|Q5ZL04185 ANAPC10 "Uncharacterized prote 0.397 0.616 0.598 6.5e-35
UNIPROTKB|Q2YDH1185 ANAPC10 "Anaphase-promoting co 0.397 0.616 0.598 1.1e-34
ZFIN|ZDB-GENE-060224-2185 anapc10 "anaphase promoting co 0.362 0.562 0.653 1.3e-34
MGI|MGI:1916249185 Anapc10 "anaphase promoting co 0.397 0.616 0.598 6.5e-35
RGD|1308936185 Anapc10 "anaphase promoting co 0.397 0.616 0.598 6.5e-35
FB|FBgn0034231195 APC10 "Anaphase Promoting Comp 0.390 0.574 0.622 1.7e-36
UNIPROTKB|F2Z4G9 ANAPC10 "Anaphase-promoting complex subunit 10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 70/117 (59%), Positives = 89/117 (76%)

Query:    82 PHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWV 141
             PHLVN+QFRRKTTV+ +CIY DYK DESYTPS++SVR G NF++LQEI  ++L EPSGW+
Sbjct:    61 PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI 120

Query:   142 XXXXXXXXXXXXRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQHPSTMF---TTVE 195
                         RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV++     F   TT++
Sbjct:   121 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTID 177
GO:0070979 "protein K11-linked ubiquitination" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA
GO:0005680 "anaphase-promoting complex" evidence=IEA
UNIPROTKB|E2R745 ANAPC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UM13 ANAPC10 "Anaphase-promoting complex subunit 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RS48 ANAPC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL04 ANAPC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2YDH1 ANAPC10 "Anaphase-promoting complex subunit 10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060224-2 anapc10 "anaphase promoting complex subunit 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1916249 Anapc10 "anaphase promoting complex subunit 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308936 Anapc10 "anaphase promoting complex subunit 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0034231 APC10 "Anaphase Promoting Complex subunit 10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UM13APC10_HUMANNo assigned EC number0.61360.53310.8270yesN/A
Q9V831APC10_DROMENo assigned EC number0.59590.59230.8717yesN/A
Q8K2H6APC10_MOUSENo assigned EC number0.60790.53310.8270yesN/A
Q2YDH1APC10_BOVINNo assigned EC number0.61360.53310.8270yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
cd08366139 cd08366, APC10, APC10 subunit of the anaphase-prom 2e-82
pfam03256175 pfam03256, APC10, Anaphase-promoting complex, subu 7e-77
COG5156189 COG5156, DOC1, Anaphase-promoting complex (APC), s 4e-37
pfam03256175 pfam03256, APC10, Anaphase-promoting complex, subu 3e-33
cd08366139 cd08366, APC10, APC10 subunit of the anaphase-prom 1e-32
cd08159129 cd08159, APC10-like, APC10-like DOC1 domains in E3 1e-15
COG5156189 COG5156, DOC1, Anaphase-promoting complex (APC), s 6e-14
cd08365131 cd08365, APC10-like1, APC10-like DOC1 domains of E 4e-06
cd08159129 cd08159, APC10-like, APC10-like DOC1 domains in E3 8e-06
cd08667131 cd08667, APC10-ZZEF1, APC10/DOC1-like domain of un 3e-05
cd08666134 cd08666, APC10-HECTD3, APC10-like DOC1 domain of H 2e-04
cd08665131 cd08665, APC10-CUL7, APC10-like DOC1 domain of CUL 0.004
>gnl|CDD|176484 cd08366, APC10, APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information 
 Score =  244 bits (624), Expect = 2e-82
 Identities = 91/162 (56%), Positives = 116/162 (71%), Gaps = 24/162 (14%)

Query: 21  REVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQ 80
           RE+GS A+WSLSS KPG GVDQLRDD +DTYWQSDG  PHL+N+QF +KT +  + +Y  
Sbjct: 1   REIGSLAVWSLSSAKPGNGVDQLRDDSLDTYWQSDGPQPHLINIQFSKKTDISAVALY-- 58

Query: 81  LPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGW 140
                                 DYKLDESYTPS++S+RAGT+ +DLQE+  V+L EP+GW
Sbjct: 59  ---------------------LDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGW 97

Query: 141 VKIPIKDIH-DKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYS 181
           V IP++D    KP+RT+ +QIA++SNHQNGRDTH+RQIKVY 
Sbjct: 98  VHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein, and the Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase complex. The APC10/DOC1 domain forms a beta-sandwich structure that is related in architecture to the galactose-binding domain-like fold; their sequences are quite dissimilar, however, and are not included here. Length = 139
>gnl|CDD|217458 pfam03256, APC10, Anaphase-promoting complex, subunit 10 (APC10) Back     alignment and domain information
>gnl|CDD|227485 COG5156, DOC1, Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217458 pfam03256, APC10, Anaphase-promoting complex, subunit 10 (APC10) Back     alignment and domain information
>gnl|CDD|176484 cd08366, APC10, APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>gnl|CDD|176482 cd08159, APC10-like, APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>gnl|CDD|227485 COG5156, DOC1, Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|176483 cd08365, APC10-like1, APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>gnl|CDD|176482 cd08159, APC10-like, APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>gnl|CDD|176488 cd08667, APC10-ZZEF1, APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>gnl|CDD|176487 cd08666, APC10-HECTD3, APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>gnl|CDD|176486 cd08665, APC10-CUL7, APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 100.0
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 100.0
KOG3437|consensus184 100.0
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 100.0
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 100.0
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 100.0
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 100.0
COG5156189 DOC1 Anaphase-promoting complex (APC), subunit 10 100.0
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 100.0
cd08664152 APC10-HERC2 APC10-like DOC1 domain present in HERC 100.0
COG5156189 DOC1 Anaphase-promoting complex (APC), subunit 10 99.97
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 99.97
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 99.96
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 99.96
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 99.95
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 99.93
cd08664152 APC10-HERC2 APC10-like DOC1 domain present in HERC 99.88
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 99.54
KOG3437|consensus184 99.52
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 99.28
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 98.59
cd00057143 FA58C Substituted updates: Jan 31, 2002 98.01
KOG1428|consensus 3738 97.34
PF07738135 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I 96.08
PF07738135 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I 95.8
PF06201152 PITH: PITH domain; InterPro: IPR010400 The full-le 95.42
PF06201152 PITH: PITH domain; InterPro: IPR010400 The full-le 92.37
cd00057143 FA58C Substituted updates: Jan 31, 2002 89.65
PF00055237 Laminin_N: Laminin N-terminal (Domain VI); InterPr 88.47
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 88.22
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-59  Score=418.44  Aligned_cols=161  Identities=52%  Similarity=0.995  Sum_probs=122.2

Q ss_pred             CceeecCcceEEEeccCCCCCcc-ccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEE
Q psy5867          19 RIREVGSQAIWSLSSCKPGFGVD-QLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQD   97 (287)
Q Consensus        19 ~~~~i~~~a~W~vSS~K~g~gv~-~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~   97 (287)
                      .++|||++|.|+|||+|+|+||+ +|||+|++|||||||+|||+|+|+|.                       |++.|+.
T Consensus        26 ~~~dI~~~a~w~vSS~K~g~gv~~~LrD~~~~TyWQSDG~qpH~I~i~f~-----------------------k~v~I~~   82 (193)
T PF03256_consen   26 GLRDIGSLAVWSVSSCKPGFGVAELLRDGSTETYWQSDGSQPHWITIQFH-----------------------KRVIISS   82 (193)
T ss_dssp             SCEE-GGGSEEEES--BTTBSCHGHCHSS-TT--EE--SSSSEEEEEEEE-----------------------EEEEE-E
T ss_pred             eeeeccCceEEEEecCCCCCCchheeeCCChhHhhccCCCCCEEEEEEEc-----------------------CCcEEEE
Confidence            38999999999999999999999 77899999999999999999999999                       9999999


Q ss_pred             EEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEE
Q psy5867          98 ICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQI  177 (287)
Q Consensus        98 i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqI  177 (287)
                      |+|||||++||||||++|+|+||++++||+++++++|++|.||+.|++.                               
T Consensus        83 l~iyvd~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~-------------------------------  131 (193)
T PF03256_consen   83 LSIYVDYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPNGWVHIPLL-------------------------------  131 (193)
T ss_dssp             EEEEEEHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-EEEEEEE-B-------------------------------
T ss_pred             EEEEEccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCCccEEEEeC-------------------------------
Confidence            9999999999999999999999999999999999999999999999883                               


Q ss_pred             EEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEeecccCCCcce
Q psy5867         178 KVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTH  257 (287)
Q Consensus       178 kIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTH  257 (287)
                                                                           +..++++|||+|||+|++|||||||||
T Consensus       132 -----------------------------------------------------~~~~~~~r~~~iqI~I~~nhq~G~Dth  158 (193)
T PF03256_consen  132 -----------------------------------------------------DNRGNPLRCFFIQIAILSNHQNGKDTH  158 (193)
T ss_dssp             -----------------------------------------------------STTTSBEEEEEEEEEEEEECCC-SS-E
T ss_pred             -----------------------------------------------------CCCCCcEEEEEEEEEEEecccCCCCCc
Confidence                                                                 456689999999999999999999999


Q ss_pred             eeeeEEeccCCCC------CCCccccceeeeeecc
Q psy5867         258 MRQIKVYSPVQQH------PSTMFTTVECQQYAVI  286 (287)
Q Consensus       258 IR~ikI~gP~~~~------~~~~ftt~~f~~~~~i  286 (287)
                      |||||||||++..      .+..|+|++|+||++|
T Consensus       159 iR~iki~gp~~~~~~~~~~~~~~~~s~~~~~~~~~  193 (193)
T PF03256_consen  159 IRGIKIYGPRPSESSSANDDFHGFSSVEFAMFSTI  193 (193)
T ss_dssp             ESEEEEEEE--------------------------
T ss_pred             eeeEEEECCCCccccccccccCCCchHHhEecccC
Confidence            9999999999862      3457999999999986

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>KOG3437|consensus Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) Back     alignment and domain information
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) Back     alignment and domain information
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>KOG3437|consensus Back     alignment and domain information
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development Back     alignment and domain information
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development Back     alignment and domain information
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome Back     alignment and domain information
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
1jhj_A171 Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE H 1e-57
1jhj_A171 Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE H 7e-20
1gqp_A221 Apc10DOC1 SUBUNIT OF S. CEREVISIAE Length = 221 4e-17
>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN Anaphase-Promoting Complex Length = 171 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/176 (58%), Positives = 125/176 (71%), Gaps = 23/176 (13%)
Query: 10  DPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRK 69
           DP   ER G +RE+GSQA+WSLSSCKPGFGVDQLRDD ++TYWQSDG  PHLVN      
Sbjct: 11  DPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVN------ 64
Query: 70  TTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEI 129
                            +QFRRKTTV+ +CIY DYK DESYTPS++SVR G NF++LQEI
Sbjct: 65  -----------------IQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEI 107
Query: 130 EVVDLNEPSGWVXXXXXXXXXXXXRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQ 185
             ++L EPSGW+            RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV++
Sbjct: 108 RQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEE 163
>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN Anaphase-Promoting Complex Length = 171 Back     alignment and structure
>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 7e-64
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 1e-26
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 4e-61
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 1e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Length = 171 Back     alignment and structure
 Score =  197 bits (502), Expect = 7e-64
 Identities = 108/176 (61%), Positives = 132/176 (75%), Gaps = 23/176 (13%)

Query: 10  DPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRK 69
           DP   ER G +RE+GSQA+WSLSSCKPGFGVDQLRDD ++TYWQSDG  PHLVN+QFRRK
Sbjct: 11  DPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRK 70

Query: 70  TTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEI 129
           TTV+ +CIY                        DYK DESYTPS++SVR G NF++LQEI
Sbjct: 71  TTVKTLCIY-----------------------ADYKSDESYTPSKISVRVGNNFHNLQEI 107

Query: 130 EVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPVQQ 185
             ++L EPSGW+ +P+ D H KP RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV++
Sbjct: 108 RQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEE 163
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Length = 171 Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Length = 221 Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Length = 221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 100.0
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 100.0
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 99.97
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 99.35
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 99.33
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 99.32
3f2z_A159 Uncharacterized protein BF3579; the present C-term 98.93
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 98.89
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 98.76
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 98.74
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 98.37
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 98.27
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 98.2
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 98.01
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.87
4a3z_A161 GH89_CBM32, alpha-N-acetylglucosaminidase family p 97.85
4a42_A149 GH89_CBM32-4, alpha-N-acetylglucosaminidase family 97.8
2v5d_A737 O-GLCNACASE NAGJ; family 32 carbohydrate binding m 97.47
4gwi_A153 Lectinolysin, platelet aggregation factor SM-HPAF; 97.38
3lei_A153 Platelet aggregation factor SM-HPAF; lectin domain 97.29
4a4a_A 914 Alpha-N-acetylglucosaminidase family protein; hydr 97.17
2j1v_A151 Fucolectin-related protein; carbohydrate-binding p 97.14
1k12_A158 Lectin; beta barrel, protein carbohydrate complex, 96.97
3f2z_A159 Uncharacterized protein BF3579; the present C-term 96.93
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 96.82
2j22_A148 Fucolectin-related protein; carbohydrate-binding p 96.68
2yfu_A155 Carbohydrate binding family 6; sugar binding prote 96.59
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 96.42
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 96.3
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 96.23
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 95.78
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 95.74
2zxq_A1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 94.96
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 94.79
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 94.32
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 92.55
1xoy_A161 Hypothetical protein AT3G04780.1; structural genom 91.82
3bn6_A158 Lactadherin; anticoagulation, anti-coagulation, an 90.93
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 89.79
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 89.56
1wwy_A171 Thioredoxin-like protein 1; structural genomics, h 89.52
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 88.31
1xoy_A161 Hypothetical protein AT3G04780.1; structural genom 88.1
4dxt_A198 SUN domain-containing protein 2; beta-sandwich, LI 87.81
2y38_A403 Laminin subunit alpha-5; structural protein, cell 87.19
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 86.62
4dxt_A198 SUN domain-containing protein 2; beta-sandwich, LI 86.56
2w1s_A192 Hyaluronoglucosaminidase; hexosaminidase, family 3 86.32
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 83.55
1czt_A160 Protein (coagulation factor V); membrane-binding, 83.3
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 81.74
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 80.31
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure
Probab=100.00  E-value=3.4e-59  Score=420.95  Aligned_cols=169  Identities=33%  Similarity=0.534  Sum_probs=137.2

Q ss_pred             HHhcCCceeecCcceEEEeccCCCCCccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeee
Q psy5867          14 EERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKT   93 (287)
Q Consensus        14 ~~~~~~~~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~   93 (287)
                      ++..+.++|||++|.|+|||+|+|+||++|||+|++|||||||+|||+|+|+|.                       |++
T Consensus        46 ~~~~~~l~eI~~~A~WsvSS~K~g~gV~~L~D~s~~TyWQSDG~qPH~ItI~f~-----------------------k~v  102 (221)
T 1gqp_A           46 ILDSARMINVTHLALWKPSSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFS-----------------------KRM  102 (221)
T ss_dssp             HHHTSSEEECGGGSEEEESCCCTTCCGGGGSSSCTTCCEECCSSSSEEEEEEEE-----------------------EEE
T ss_pred             ecccCCceeccCceEEEEecCCCcCCHHHhcCCCccceeccCCCCCeEEEEEEc-----------------------CCc
Confidence            456678999999999999999999999999999999999999999999999999                       999


Q ss_pred             eEEEEEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccce
Q psy5867          94 TVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTH  173 (287)
Q Consensus        94 ~i~~i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdth  173 (287)
                      .|+.|+||+||++||||||++|+|+||++++||+|+++++|++|.||+.|++++.                         
T Consensus       103 ~I~~L~iyvD~~~DeSYtPs~I~V~aG~~~~dL~e~~~v~l~~p~GWv~i~l~d~-------------------------  157 (221)
T 1gqp_A          103 DICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDN-------------------------  157 (221)
T ss_dssp             EECEEEEEEEHHHHGGGSEEEEEEEEESSTTTCEEEEEEEEEECEEEEEECCC---------------------------
T ss_pred             eEEEEEEEECCCCCCCCCCEEEEEEEeCCcCcceEEEEEEecCCCEEEEEEccCC-------------------------
Confidence            9999999999999999999999999999999999999999999999999987420                         


Q ss_pred             eEEEEEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEeecccCC
Q psy5867         174 MRQIKVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNG  253 (287)
Q Consensus       174 IrqIkIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNG  253 (287)
                                                                               ..++++++||+|||+|++|||||
T Consensus       158 ---------------------------------------------------------~~~~~~l~~~~IQI~I~~nhqnG  180 (221)
T 1gqp_A          158 ---------------------------------------------------------REDDQLLKCQFIRLLFPVNHENG  180 (221)
T ss_dssp             ---------------------------------------------------------------EEEEEEEEEEEEESTTC
T ss_pred             ---------------------------------------------------------CCCCCeeEEEEEEEEEeeccCCC
Confidence                                                                     01346789999999999999999


Q ss_pred             CcceeeeeEEeccCCCCC-------CCccccceeeeeeccC
Q psy5867         254 RDTHMRQIKVYSPVQQHP-------STMFTTVECQQYAVIR  287 (287)
Q Consensus       254 rDTHIR~ikI~gP~~~~~-------~~~ftt~~f~~~~~iR  287 (287)
                      |||||||||||||+....       ....++++|.+|++||
T Consensus       181 rDThIRqIkI~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~r  221 (221)
T 1gqp_A          181 KDTHLRGIRLYVPSNEPHQDTHEWAQTLPETNNVFQDAILR  221 (221)
T ss_dssp             SSCEESCEEEEEEC---------------------------
T ss_pred             CccEEEEEEEEccCCccchhccccccCcccChhhhhheecC
Confidence            999999999999986421       1234999999999998
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Back     alignment and structure
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Back     alignment and structure
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Back     alignment and structure
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* Back     alignment and structure
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} Back     alignment and structure
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A* Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Back     alignment and structure
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens} Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Back     alignment and structure
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A Back     alignment and structure
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A* Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1jhja_161 b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p 5e-56
d1jhja_161 b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p 8e-26
d1gqpa_194 b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p 1e-49
d1gqpa_194 b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p 3e-27
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  176 bits (446), Expect = 5e-56
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 23/174 (13%)

Query: 10  DPVMEERLGRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRK 69
           DP   ER G +RE+GSQA+WSLSSCKPGFGVDQLRDD ++TYWQSDG  PHLVN+QFRRK
Sbjct: 11  DPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRK 70

Query: 70  TTVQDICIYRQLPHLVNVQFRRKTTVQDICIYTDYKLDESYTPSRVSVRAGTNFNDLQEI 129
           TTV+ +CIY                        DYK DESYTPS++SVR G NF++LQEI
Sbjct: 71  TTVKTLCIY-----------------------ADYKSDESYTPSKISVRVGNNFHNLQEI 107

Query: 130 EVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQIKVYSPV 183
             ++L EPSGW+ +P+ D H KP RT+MIQIAV++NHQNGRDTHMRQIK+Y+PV
Sbjct: 108 RQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPV 161
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 100.0
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 100.0
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 99.79
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 98.8
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 98.75
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 98.6
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 98.41
d1k12a_158 Fucose binding lectin {European eel (Anguilla angu 96.73
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 95.98
d2qqia2155 B1 domain of neuropilin-1 {Human (Homo sapiens) [T 94.54
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 93.78
d2qqia1156 C2 domain of factor VIII {Human (Homo sapiens) [Ta 91.42
d1xoya_161 Hypothetical protein AT3g04780/F7O18_27 {Thale cre 87.87
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 84.49
d1xoya_161 Hypothetical protein AT3g04780/F7O18_27 {Thale cre 81.46
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-41  Score=299.13  Aligned_cols=145  Identities=35%  Similarity=0.618  Sum_probs=132.9

Q ss_pred             CCceeecCcceEEEeccCCCCCccccccCCCCceeccCCCCCcEEEEEEcccccccchhhhcccCceeeeeeeeeeeEEE
Q psy5867          18 GRIREVGSQAIWSLSSCKPGFGVDQLRDDCMDTYWQSDGQLPHLVNVQFRRKTTVQDICIYRQLPHLVNVQFRRKTTVQD   97 (287)
Q Consensus        18 ~~~~~i~~~a~W~vSS~K~g~gv~~L~d~~~~tyWQSdg~~pH~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~   97 (287)
                      ..+.||+++|.|++||+|+|+|+++|+|+|.+|||||+|++||||+|+|.                       |.+.|..
T Consensus        50 ~~l~~i~~~a~~~~SS~~~g~~~~~~~Dgn~~T~W~S~~~~ph~i~idl~-----------------------~~~~i~~  106 (194)
T d1gqpa_          50 ARMINVTHLALWKPSSFKLGNPVDFALDDNYDTFWQSDGGQPHQLDIMFS-----------------------KRMDICV  106 (194)
T ss_dssp             SSEEECGGGSEEEESCCCTTCCGGGGSSSCTTCCEECCSSSSEEEEEEEE-----------------------EEEEECE
T ss_pred             CceeecccCceEEEEecCCCCCHHHhcCCCCcceeccCCCCCEEEEEECC-----------------------CCcEEEE
Confidence            46899999999999999999999999999999999999999999999999                       9999999


Q ss_pred             EEEEeecCCCCCcCcceEEEeecCCcCCceeeeEEEccCCCceEEEEeccCCCCceeEEEEEEEEEeeeecCccceeEEE
Q psy5867          98 ICIYTDYKLDESYTPSRVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTHMRQI  177 (287)
Q Consensus        98 i~i~~~~~~DeSYtPs~I~i~~G~~~~dL~e~~~v~~~~p~Gwv~i~~~~~~d~~l~~f~iQi~I~~n~qfGrdthIrqI  177 (287)
                      |.||++++.|+||+|+++.|++|++..|+.+++++++++|.||+.+++.+                              
T Consensus       107 i~i~~~~~~d~sy~p~~~~i~~s~d~~~w~~v~t~~~~~~~Gwv~i~l~~------------------------------  156 (194)
T d1gqpa_         107 MAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLD------------------------------  156 (194)
T ss_dssp             EEEEEEHHHHGGGSEEEEEEEEESSTTTCEEEEEEEEEECEEEEEECCC-------------------------------
T ss_pred             EEEEecccccccCCceEEEEEEeCCcCCceEEEEEEecCCCceEEEEccc------------------------------
Confidence            99999999999999999999999999999999999999999999998752                              


Q ss_pred             EEecCCCCCCCCccccceeeEeeeecCCCccCcceeeeeeccCCCCeEEEeccCCCCCceEEEEEEEEEeecccCCCcce
Q psy5867         178 KVYSPVQQHPSTMFTTVECQQVSVRAGTNFNDLQEIEVVDLNEPSGWVKIPIKDIHDKPIRTYMIQIAVMSNHQNGRDTH  257 (287)
Q Consensus       178 kIy~~~~~des~~fTSytpskISiraG~~~~Dl~ev~~~~l~eP~GWv~i~l~~~~~~~lr~~~lQi~Il~NHqNGrDTH  257 (287)
                                                                          ....++|++|++|||.|++|||||||||
T Consensus       157 ----------------------------------------------------~~~~~~pv~aryIri~i~~nhqnGkDt~  184 (194)
T d1gqpa_         157 ----------------------------------------------------NREDDQLLKCQFIRLLFPVNHENGKDTH  184 (194)
T ss_dssp             -----------------------------------------------------------EEEEEEEEEEEEESTTCSSCE
T ss_pred             ----------------------------------------------------CcccCCeEEEEEEEEEEEecccCCcccE
Confidence                                                                0123568899999999999999999999


Q ss_pred             eeeeEEeccC
Q psy5867         258 MRQIKVYSPV  267 (287)
Q Consensus       258 IR~ikI~gP~  267 (287)
                      |||||||||.
T Consensus       185 IR~irv~Gp~  194 (194)
T d1gqpa_         185 LRGIRLYVPS  194 (194)
T ss_dssp             ESCEEEEEEC
T ss_pred             EEeeEEeCCC
Confidence            9999999994
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} Back     information, alignment and structure
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure