Psyllid ID: psy586

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL
cccccHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccEEccccccEEEEEEcccccEEEccccccccccccccccccccEEcccEEEEEccccccccEEEEcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccEHHHHHHHHHHHHccccHHHEEEEEEcccccEEEcccccEcccccccccccEEEEEEEccccccHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEccEEEEEEccccccccEEEEHHHEEEEEEEccEEEEEEcccccccEEEEcccHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
WRATGRDLFDLVCRTvglretwyfglqyednKGFIAWLKLDKKVqdqgisnqcttpFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQakygdyddstykpgmlasedllpqrvidqyqmtpEMWEDRIKIWYadhrgmsrdEAEMEYLKIAQdldmygvnyfpisnkkdtdlWLGVTALGLNIyekenkltpkttfpwseirhisfddkkfiikpvdksspnfIFFSLKVRMNKlygdyddstykpgmlasedllpqrygdyddstykpgmlasedllpqrvidqyqmtpEMWEDRIKIWYadhrgmsrdEAEMEYLKIAQdldmygvnyfpISILDLCignhdlfmrrrkpdtmEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL
wratgrdlfdlvcRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLniyekenkltpkttfpwseirhisfdDKKFiikpvdksspnFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMksqakeeksrrqiernklaREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL
WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL
*****RDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFM***************************************************LVQYQEEIRLANEALKCVKV*******************************
WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDL*****************LASE*******************************************IAQDLDMYGVNYFP*********************************************************************************************************************
WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTM******************ERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLANEAL
WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNKLAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQRLVQYQEEIRLA****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRLANEALKCVKVSExxxxxxxxxxxxxxxxxxxxxIRLANEAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query472 2.2.26 [Sep-21-2011]
Q24564 635 Moesin/ezrin/radixin homo yes N/A 0.550 0.409 0.673 1e-108
P31976581 Ezrin OS=Bos taurus GN=EZ yes N/A 0.533 0.433 0.658 1e-105
P15311586 Ezrin OS=Homo sapiens GN= yes N/A 0.533 0.430 0.654 1e-105
P46662596 Merlin OS=Mus musculus GN yes N/A 0.546 0.432 0.678 1e-105
Q8HZQ5586 Ezrin OS=Oryctolagus cuni yes N/A 0.533 0.430 0.650 1e-105
P35240595 Merlin OS=Homo sapiens GN no N/A 0.546 0.433 0.681 1e-105
P59750595 Merlin OS=Papio anubis GN N/A N/A 0.546 0.433 0.681 1e-105
P26040586 Ezrin OS=Mus musculus GN= no N/A 0.533 0.430 0.654 1e-104
P31977586 Ezrin OS=Rattus norvegicu yes N/A 0.533 0.430 0.650 1e-104
Q63648586 Merlin (Fragment) OS=Ratt no N/A 0.546 0.440 0.678 1e-104
>sp|Q24564|MERH_DROME Moesin/ezrin/radixin homolog 2 OS=Drosophila melanogaster GN=Mer PE=1 SV=1 Back     alignment and function desciption
 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 177/263 (67%), Positives = 214/263 (81%), Gaps = 3/263 (1%)

Query: 2   RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTP---FM 58
           RA+G+DLFDLVCRT+GLRE+WYFGLQY D +  ++WLK++K+V+DQ +    +     F 
Sbjct: 30  RASGQDLFDLVCRTIGLRESWYFGLQYVDTRSNVSWLKMEKRVRDQRVELHASNNVYVFS 89

Query: 59  FLAKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDD 118
           F AKF+ E+V+EEL+QE+TQHLFFLQVKQ+ILSMDIYC PEASVLLASYAV  +YG YD 
Sbjct: 90  FYAKFFPENVSEELIQEITQHLFFLQVKQSILSMDIYCRPEASVLLASYAVHVQYGPYDY 149

Query: 119 STYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 178
            TYK GMLA  +LLP+ V DQYQMTPEMWE+RIK WY DH  M+RDE EMEYLKIAQDLD
Sbjct: 150 ETYKDGMLAGGELLPKGVTDQYQMTPEMWEERIKTWYMDHEPMTRDEVEMEYLKIAQDLD 209

Query: 179 MYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKP 238
           MYGVNYFPI+NK  T LWLGVT++GLNIY++ +KLTPKTTF W+EIRH+SFDDKKF I+ 
Sbjct: 210 MYGVNYFPITNKNKTKLWLGVTSVGLNIYDERDKLTPKTTFQWNEIRHVSFDDKKFTIRL 269

Query: 239 VDKSSPNFIFFSLKVRMNKLYGD 261
           VD    NFIF+S  + +NK+  D
Sbjct: 270 VDAKVSNFIFYSQDLHINKMILD 292
Regulator of the Hippo/SWH (Sav/Wts/Hpo) signaling pathway, a signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein Hippo (Hpo), in complex with its regulatory protein Salvador (Sav), phosphorylates and activates Warts (Wts) in complex with its regulatory protein Mats, which in turn phosphorylates and inactivates the Yorkie (Yki) oncoprotein. Mer acts synergistically along with Ex and Kibra to regulate the Hippo signaling pathway.
Drosophila melanogaster (taxid: 7227)
>sp|P31976|EZRI_BOVIN Ezrin OS=Bos taurus GN=EZR PE=1 SV=2 Back     alignment and function description
>sp|P15311|EZRI_HUMAN Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4 Back     alignment and function description
>sp|P46662|MERL_MOUSE Merlin OS=Mus musculus GN=Nf2 PE=1 SV=2 Back     alignment and function description
>sp|Q8HZQ5|EZRI_RABIT Ezrin OS=Oryctolagus cuniculus GN=EZR PE=1 SV=3 Back     alignment and function description
>sp|P35240|MERL_HUMAN Merlin OS=Homo sapiens GN=NF2 PE=1 SV=1 Back     alignment and function description
>sp|P59750|MERL_PAPAN Merlin OS=Papio anubis GN=NF2 PE=3 SV=1 Back     alignment and function description
>sp|P26040|EZRI_MOUSE Ezrin OS=Mus musculus GN=Ezr PE=1 SV=3 Back     alignment and function description
>sp|P31977|EZRI_RAT Ezrin OS=Rattus norvegicus GN=Ezr PE=1 SV=3 Back     alignment and function description
>sp|Q63648|MERL_RAT Merlin (Fragment) OS=Rattus norvegicus GN=Nf2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
345484366 643 PREDICTED: merlin-like [Nasonia vitripen 0.949 0.696 0.602 1e-147
350411405 641 PREDICTED: merlin-like [Bombus impatiens 0.578 0.425 0.879 1e-145
340729719 641 PREDICTED: LOW QUALITY PROTEIN: merlin-l 0.578 0.425 0.879 1e-145
307178403 605 Merlin [Camponotus floridanus] 0.904 0.705 0.612 1e-145
328778643 641 PREDICTED: merlin-like [Apis mellifera] 0.578 0.425 0.879 1e-145
307200017564 Merlin [Harpegnathos saltator] 0.531 0.445 0.915 1e-145
383853948 641 PREDICTED: merlin [Megachile rotundata] 0.930 0.684 0.596 1e-145
380017225 641 PREDICTED: LOW QUALITY PROTEIN: merlin-l 0.578 0.425 0.875 1e-145
332030332 606 Merlin [Acromyrmex echinatior] 0.898 0.699 0.612 1e-144
322789424361 hypothetical protein SINV_11078 [Solenop 0.578 0.756 0.879 1e-142
>gi|345484366|ref|XP_001601599.2| PREDICTED: merlin-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/471 (60%), Positives = 334/471 (70%), Gaps = 23/471 (4%)

Query: 1   WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60
           WRATGRDLFDLVCRT+GLRETWYFGLQYED+KGFI+WLKLDKKVQDQGIS Q TTPFMFL
Sbjct: 34  WRATGRDLFDLVCRTIGLRETWYFGLQYEDSKGFISWLKLDKKVQDQGISQQSTTPFMFL 93

Query: 61  AKFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDST 120
           AKFY EDVAEELVQEVTQHLF+LQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYD+++
Sbjct: 94  AKFYPEDVAEELVQEVTQHLFYLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDEAS 153

Query: 121 YKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMY 180
           Y+PGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADH+ MSRDEAEMEYLK+AQDLDMY
Sbjct: 154 YQPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHKTMSRDEAEMEYLKVAQDLDMY 213

Query: 181 GVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD 240
           GVNYFPISNKK+T+LWLGVTALGLNIYEKENKLTPKTTF WSEIRHISFDDKKFIIKPVD
Sbjct: 214 GVNYFPISNKKETNLWLGVTALGLNIYEKENKLTPKTTFAWSEIRHISFDDKKFIIKPVD 273

Query: 241 KSSPNFIFFSLKVRMNKLYGDYDD-STYKPGMLASEDLLPQRYGDYDDSTYKPGML---- 295
           KSSPNF+FFS KVRMNKL     D   +  G L     + +R  D         +L    
Sbjct: 274 KSSPNFVFFSQKVRMNKLVKKKSDVGRWVKGGLQVALGMDERNSDKATRALFVKILDLCI 333

Query: 296 ASEDLLPQR----VIDQYQMTPEMWEDRIKIWYADHR----GMSRDEAEMEYLKIAQDLD 347
            + DL  +R     ++  QM  +  E++ +     ++       R+ AE E   + Q L 
Sbjct: 334 GNHDLFMRRRKPDSMEVQQMKAQAKEEKSRRQIERNKLAREKQLREAAEREKAAMEQRLL 393

Query: 348 MYGVNY-FPISILDLCIGNHDLFMRRRK---PDTMEIQQMKSQAKEEKSRRQIERNKLAR 403
            Y          L       DL   + +    + M + Q  S+A++E +R ++   K   
Sbjct: 394 QYQEEIRLANEALRRSEETADLLAEKSRVAEEEAMLLSQKASEAEQEITRIRLNNMKTEE 453

Query: 404 EKQLREAAEREKCAMEQRLVQYQ-----EEIRLANEALKCVKVSEREAAER 449
           EK   E   R+   + + LVQ       EE +L +E L+  +++E+EA E+
Sbjct: 454 EKVHLEQKTRDAVRLTEMLVQESEKRALEEKKLKDELLRA-RIAEKEAKEK 503

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350411405|ref|XP_003489338.1| PREDICTED: merlin-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340729719|ref|XP_003403144.1| PREDICTED: LOW QUALITY PROTEIN: merlin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307178403|gb|EFN67134.1| Merlin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328778643|ref|XP_003249526.1| PREDICTED: merlin-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307200017|gb|EFN80363.1| Merlin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383853948|ref|XP_003702484.1| PREDICTED: merlin [Megachile rotundata] Back     alignment and taxonomy information
>gi|380017225|ref|XP_003692560.1| PREDICTED: LOW QUALITY PROTEIN: merlin-like [Apis florea] Back     alignment and taxonomy information
>gi|332030332|gb|EGI70075.1| Merlin [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322789424|gb|EFZ14728.1| hypothetical protein SINV_11078 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
UNIPROTKB|P15311586 EZR "Ezrin" [Homo sapiens (tax 0.538 0.433 0.657 7.6e-118
UNIPROTKB|F1SV14583 RDX "Radixin" [Sus scrofa (tax 0.538 0.435 0.645 9.8e-116
MGI|MGI:97887583 Rdx "radixin" [Mus musculus (t 0.538 0.435 0.645 9.8e-116
ZFIN|ZDB-GENE-040622-3586 nf2b "neurofibromin 2b (merlin 0.540 0.435 0.637 9.8e-116
UNIPROTKB|F1MJJ8583 RDX "Radixin" [Bos taurus (tax 0.538 0.435 0.645 1.3e-115
UNIPROTKB|Q32LP2583 RDX "Radixin" [Bos taurus (tax 0.538 0.435 0.645 1.3e-115
UNIPROTKB|E2RRC6 604 RDX "Uncharacterized protein" 0.538 0.420 0.645 1.3e-115
UNIPROTKB|P26044583 RDX "Radixin" [Sus scrofa (tax 0.538 0.435 0.645 1.3e-115
RGD|1359472583 Rdx "radixin" [Rattus norvegic 0.538 0.435 0.641 1.6e-115
UNIPROTKB|A7YIJ8 604 RDX "Radixin isoform b" [Homo 0.538 0.420 0.645 2e-115
UNIPROTKB|P15311 EZR "Ezrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 939 (335.6 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 167/254 (65%), Positives = 210/254 (82%)

Query:     4 TGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKF 63
             TG+ LFD V +T+GLRE WYFGL Y DNKGF  WLKLDKKV  Q +  +    F F AKF
Sbjct:    25 TGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRAKF 84

Query:    64 YAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKP 123
             Y EDVAEEL+Q++TQ LFFLQVK+ ILS +IYCPPE +VLL SYAVQAK+GDY+   +K 
Sbjct:    85 YPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKS 144

Query:   124 GMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVN 183
             G L+SE L+PQRV+DQ+++T + WEDRI++W+A+HRGM +D A +EYLKIAQDL+MYG+N
Sbjct:   145 GYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGIN 204

Query:   184 YFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSS 243
             YF I NKK TDLWLGV ALGLNIYEK++KLTPK  FPWSEIR+ISF+DKKF+IKP+DK +
Sbjct:   205 YFEIKNKKGTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKA 264

Query:   244 PNFIFFSLKVRMNK 257
             P+F+F++ ++R+NK
Sbjct:   265 PDFVFYAPRLRINK 278
GO:0008360 "regulation of cell shape" evidence=IEA
GO:0001931 "uropod" evidence=IEA
GO:0005932 "microtubule basal body" evidence=IEA
GO:0030855 "epithelial cell differentiation" evidence=IEA
GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IEA
GO:0016324 "apical plasma membrane" evidence=IEA
GO:0031528 "microvillus membrane" evidence=IEA
GO:0032587 "ruffle membrane" evidence=IEA
GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=NAS
GO:0051015 "actin filament binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0015629 "actin cytoskeleton" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0001726 "ruffle" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0051017 "actin filament bundle assembly" evidence=IDA
GO:0016323 "basolateral plasma membrane" evidence=ISS
GO:0005884 "actin filament" evidence=IDA
GO:0030863 "cortical cytoskeleton" evidence=TAS
GO:0007411 "axon guidance" evidence=TAS
GO:0007159 "leukocyte cell-cell adhesion" evidence=IEP
GO:0005902 "microvillus" evidence=IDA
GO:0022614 "membrane to membrane docking" evidence=IEP
GO:0030175 "filopodium" evidence=IDA
GO:0045177 "apical part of cell" evidence=IDA
GO:0050839 "cell adhesion molecule binding" evidence=IPI
GO:0005925 "focal adhesion" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|F1SV14 RDX "Radixin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:97887 Rdx "radixin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040622-3 nf2b "neurofibromin 2b (merlin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJJ8 RDX "Radixin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LP2 RDX "Radixin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRC6 RDX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P26044 RDX "Radixin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1359472 Rdx "radixin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7YIJ8 RDX "Radixin isoform b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46662MERL_MOUSENo assigned EC number0.67800.54660.4328yesN/A
Q24564MERH_DROMENo assigned EC number0.67300.55080.4094yesN/A
Q8HZQ5EZRI_RABITNo assigned EC number0.65090.53380.4300yesN/A
P15311EZRI_HUMANNo assigned EC number0.65490.53380.4300yesN/A
P31977EZRI_RATNo assigned EC number0.65090.53380.4300yesN/A
P31976EZRI_BOVINNo assigned EC number0.65880.53380.4337yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
smart00295201 smart00295, B41, Band 4 1e-49
cd1319497 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe 3e-49
pfam00373113 pfam00373, FERM_M, FERM central domain 2e-29
pfam0938090 pfam09380, FERM_C, FERM C-terminal PH-like domain 1e-20
cd13187124 cd13187, FERM_C_PTPH13, Protein tyrosine phosphata 3e-19
cd13189123 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine 2e-17
smart00295201 smart00295, B41, Band 4 2e-14
pfam0937979 pfam09379, FERM_N, FERM N-terminal domain 3e-14
cd0083691 cd00836, FERM_C-lobe, FERM domain C-lobe 2e-13
cd13184113 cd13184, FERM_C_4_1_family, Protein 4 6e-13
pfam00373113 pfam00373, FERM_M, FERM central domain 9e-13
cd13193122 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleck 1e-10
cd13186111 cd13186, FERM_C_NBL4_NBL5, Novel band 4 4e-10
cd13192105 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containin 6e-10
cd13191115 cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-contain 2e-09
cd13188111 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine ph 2e-09
cd13185109 cd13185, FERM_C_FRMD1_FRMD6, FERM domain containin 3e-08
cd13199176 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) 2e-07
cd1319497 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe 2e-06
cd13195131 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligas 2e-06
cd13202111 cd13202, FERM_C_MyoX, Myosin X (MyoX, Myo10) FERM 2e-06
cd13199176 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) 1e-04
pfam0938090 pfam09380, FERM_C, FERM C-terminal PH-like domain 0.001
TIGR02794 346 TIGR02794, tolA_full, TolA protein 0.002
COG3064 387 COG3064, TolA, Membrane protein involved in colici 0.002
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 0.002
cd13187124 cd13187, FERM_C_PTPH13, Protein tyrosine phosphata 0.004
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 0.004
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information 
 Score =  167 bits (426), Expect = 1e-49
 Identities = 66/187 (35%), Positives = 108/187 (57%), Gaps = 7/187 (3%)

Query: 2   RATGRDLFDLVCRTVGLRETWYFGLQYED-NKGFIAWLKLDKKVQDQGISNQCTTPFMFL 60
             T  +L + VCR +G+RE+ YFGLQ+ED ++    WL   K + DQ           F 
Sbjct: 19  STTAEELLETVCRKLGIRESEYFGLQFEDPDEDLRHWLDPAKTLLDQ-DVKSEPLTLYFR 77

Query: 61  AKFYAEDVAEELVQEVTQH-LFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDS 119
            KFY  D   +L ++ T+  L +LQV+  IL   + CP E ++LLA+ A+QA++GDYD+ 
Sbjct: 78  VKFYPPDP-NQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEE 136

Query: 120 TY-KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLD 178
            +   G L+ +  LP++++D      + W +RI   + +  G+S +EA+++YL++A+ L 
Sbjct: 137 LHDLRGELSLKRFLPKQLLDS--RKLKEWRERIVELHKELIGLSPEEAKLKYLELARKLP 194

Query: 179 MYGVNYF 185
            YGV  F
Sbjct: 195 TYGVELF 201

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201
>gnl|CDD|241348 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe/F3 Back     alignment and domain information
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain Back     alignment and domain information
>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain Back     alignment and domain information
>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241343 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine phosphatase non-receptor proteins 3 and 4 (PTPN4 and PTPN3) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information
>gnl|CDD|220215 pfam09379, FERM_N, FERM N-terminal domain Back     alignment and domain information
>gnl|CDD|241233 cd00836, FERM_C-lobe, FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241338 cd13184, FERM_C_4_1_family, Protein 4 Back     alignment and domain information
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain Back     alignment and domain information
>gnl|CDD|241347 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins FERM domain Back     alignment and domain information
>gnl|CDD|241340 cd13186, FERM_C_NBL4_NBL5, Novel band 4 Back     alignment and domain information
>gnl|CDD|241346 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containing protein 3 and 5 FERM (FRMD3 and 5) domain C-lobe Back     alignment and domain information
>gnl|CDD|241345 cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-containing protein 4A and 4B (FRMD4A and 4B) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241342 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine phosphatase non-receptor proteins 14 and 21 (PTPN14 and 21) FERM domain Back     alignment and domain information
>gnl|CDD|241339 cd13185, FERM_C_FRMD1_FRMD6, FERM domain containing 1 and 6 proteins FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241353 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) FERM domain C-lobe, repeat 2 Back     alignment and domain information
>gnl|CDD|241348 cd13194, FERM_C_ERM, ERM family FERM domain C-lobe/F3 Back     alignment and domain information
>gnl|CDD|241349 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241356 cd13202, FERM_C_MyoX, Myosin X (MyoX, Myo10) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241353 cd13199, FERM_C2_MyoVII, Myosin VII (MyoVII, Myo7) FERM domain C-lobe, repeat 2 Back     alignment and domain information
>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
KOG3529|consensus 596 100.0
KOG3530|consensus 616 100.0
KOG0792|consensus 1144 100.0
KOG3527|consensus 975 100.0
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 100.0
KOG3529|consensus 596 99.98
KOG3530|consensus 616 99.98
KOG3531|consensus 1036 99.96
KOG3527|consensus 975 99.95
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 99.9
KOG0792|consensus 1144 99.9
KOG4261|consensus 1003 99.84
KOG3531|consensus 1036 99.83
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 99.69
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 99.61
KOG0248|consensus936 99.6
KOG4371|consensus 1332 99.6
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 99.53
KOG3552|consensus 1298 99.48
cd0083692 FERM_C FERM_C domain. The FERM_C domain is the thi 99.46
KOG4371|consensus 1332 99.46
KOG3727|consensus664 99.33
KOG4261|consensus 1003 99.06
PF0938090 FERM_C: FERM C-terminal PH-like domain; InterPro: 98.94
cd0083692 FERM_C FERM_C domain. The FERM_C domain is the thi 98.33
KOG4257|consensus 974 98.32
KOG3784|consensus407 98.05
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 97.61
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 97.35
PTZ0045890 acyl CoA binding protein; Provisional 96.34
KOG4335|consensus558 96.1
PF0938090 FERM_C: FERM C-terminal PH-like domain; InterPro: 95.95
PF00769 246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 95.92
KOG3727|consensus664 95.42
KOG0817|consensus142 95.05
KOG0248|consensus936 94.99
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 94.83
KOG4335|consensus558 94.77
KOG3552|consensus 1298 93.74
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 93.57
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 92.66
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 92.05
cd0177687 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin 91.97
KOG2412|consensus 591 91.82
PLN03086 567 PRLI-interacting factor K; Provisional 90.69
PRK06568154 F0F1 ATP synthase subunit B; Validated 90.24
PRK06569155 F0F1 ATP synthase subunit B'; Validated 88.62
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 88.62
KOG1029|consensus 1118 88.09
PF02174100 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 87.6
KOG0163|consensus 1259 86.64
PRK14475167 F0F1 ATP synthase subunit B; Provisional 86.6
cd01203104 DOK_PTB Downstream of tyrosine kinase (DOK) Phosph 86.12
KOG1029|consensus 1118 85.95
PRK07353140 F0F1 ATP synthase subunit B'; Validated 85.8
KOG3878|consensus469 85.31
PRK14472175 F0F1 ATP synthase subunit B; Provisional 85.21
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 84.75
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 84.62
PTZ0045890 acyl CoA binding protein; Provisional 84.57
PRK09174204 F0F1 ATP synthase subunit B'; Validated 84.49
PRK13460173 F0F1 ATP synthase subunit B; Provisional 84.39
CHL00019184 atpF ATP synthase CF0 B subunit 84.24
PF11068131 YlqD: YlqD protein; InterPro: IPR021297 This bacte 84.11
cd00824104 PTBI IRS-like phosphotyrosine-binding domain. IRS- 83.79
PTZ00121 2084 MAEBL; Provisional 83.38
CHL00019184 atpF ATP synthase CF0 B subunit 83.33
PRK13460173 F0F1 ATP synthase subunit B; Provisional 83.25
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 83.13
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 83.03
PRK06231205 F0F1 ATP synthase subunit B; Validated 82.81
PRK14474 250 F0F1 ATP synthase subunit B; Provisional 82.68
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 82.59
PRK13453173 F0F1 ATP synthase subunit B; Provisional 82.46
PRK06231205 F0F1 ATP synthase subunit B; Validated 82.39
PRK05759156 F0F1 ATP synthase subunit B; Validated 82.3
PRK09174204 F0F1 ATP synthase subunit B'; Validated 81.94
PRK14472175 F0F1 ATP synthase subunit B; Provisional 81.67
PRK14475167 F0F1 ATP synthase subunit B; Provisional 81.45
PRK14471164 F0F1 ATP synthase subunit B; Provisional 81.14
PRK13453173 F0F1 ATP synthase subunit B; Provisional 81.0
PRK14473164 F0F1 ATP synthase subunit B; Provisional 80.54
TIGR03321 246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 80.49
PRK07352174 F0F1 ATP synthase subunit B; Validated 80.1
>KOG3529|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.5e-63  Score=524.29  Aligned_cols=367  Identities=63%  Similarity=1.041  Sum_probs=337.1

Q ss_pred             CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586            1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL   80 (472)
Q Consensus         1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L   80 (472)
                      |++||++||+.||+++||+|+|||||+|+|+++...||++++++..|++++..|+.|+|+++|||+++.+++++++|.+|
T Consensus        31 ~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~~t~~L  110 (596)
T KOG3529|consen   31 PKTTGKQLFDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDKKVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQDITQHL  110 (596)
T ss_pred             cchhHHHHHHHHhccCCCchhhhcccccccCCCCcchhhccchhhhhhcCCCCCcceeeeeecchHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999988899999999999999988999999999


Q ss_pred             HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586           81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG  160 (472)
Q Consensus        81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g  160 (472)
                      ||+|||..||++.++|++|++++||||+||+.+|||+.+.|..+++....+||.+++++|+||.++|+.+|..||.+|.|
T Consensus       111 ffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~  190 (596)
T KOG3529|consen  111 FFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRG  190 (596)
T ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586          161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD  240 (472)
Q Consensus       161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d  240 (472)
                      |++++|+++||++++++||||++||+++|+.|+..||||+..|+++|+..++.+|...|||++|+|++|++++|.|+++|
T Consensus       191 ~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~id  270 (596)
T KOG3529|consen  191 MTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPID  270 (596)
T ss_pred             hhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH
Q psy586          241 KSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI  320 (472)
Q Consensus       241 ~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I  320 (472)
                      +..++|.|+.+.+++|.+                                                              
T Consensus       271 ~~~~~f~~~~~~~~~~~~--------------------------------------------------------------  288 (596)
T KOG3529|consen  271 KKASDFSFYAPRLRINKR--------------------------------------------------------------  288 (596)
T ss_pred             cccCcccccccccccchh--------------------------------------------------------------
Confidence            999999999999999888                                                              


Q ss_pred             HHHHHhccCCChhHHHHHHHHHhhhccccCcceeecceeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhHHhh
Q psy586          321 KIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNK  400 (472)
Q Consensus       321 ~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~~~~  400 (472)
                                                           +++.|+|+|.+.++++.+.+.+..++-...+..-.+++.++.+
T Consensus       289 -------------------------------------~l~~~~~~~~l~~rr~~~~ti~vqq~~~~a~~~k~~~~~e~~~  331 (596)
T KOG3529|consen  289 -------------------------------------ILDLCMGNHELYMRRRKPDTIEVQQMKAQAREEKARKQLERAK  331 (596)
T ss_pred             -------------------------------------hhhhhhccchhhhhcccccccchhhccccccchHHHHHHhhhh
Confidence                                                 7888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHh
Q psy586          401 LAREKQLREAAEREKC-------AMEQRLVQYQEEIRLANEALKCVKV-------------SEREAAEREKCAMEQRLVQ  460 (472)
Q Consensus       401 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  460 (472)
                      +..+...|+.++.+..       +++-++.|+++.+..+.+++.....             .....+|+++.++++-..+
T Consensus       332 ~~~~~~~re~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~E~~~~~l~~~a~~le~e~~rL~e~~~~  411 (596)
T KOG3529|consen  332 LEREKKKRETGEKEGSELERLKEELQGRMAQAQEDVERARRELAEASRKARDLEEERKLLKKEASELEAERPRLEELKQK  411 (596)
T ss_pred             hhHHHhhhhhcccccCcccccchhhhhhhhhhhHHHHHhhhcchhhcccccCccchhhhhhhhHhhhhhhhhHHHHHHHH
Confidence            9999999998887754       5666777777777776665542111             1233455555566666666


Q ss_pred             HHHHHH
Q psy586          461 YQEEIR  466 (472)
Q Consensus       461 ~~~~~~  466 (472)
                      +++|..
T Consensus       412 le~e~~  417 (596)
T KOG3529|consen  412 LEEEKH  417 (596)
T ss_pred             HHHHhh
Confidence            666653

>KOG3530|consensus Back     alignment and domain information
>KOG0792|consensus Back     alignment and domain information
>KOG3527|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>KOG3529|consensus Back     alignment and domain information
>KOG3530|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG3527|consensus Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>KOG0792|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>KOG0248|consensus Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>cd00836 FERM_C FERM_C domain Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4 Back     alignment and domain information
>cd00836 FERM_C FERM_C domain Back     alignment and domain information
>KOG4257|consensus Back     alignment and domain information
>KOG3784|consensus Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4 Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>KOG0248|consensus Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector Back     alignment and domain information
>KOG2412|consensus Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PRK07353 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>KOG3878|consensus Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function Back     alignment and domain information
>cd00824 PTBI IRS-like phosphotyrosine-binding domain Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information
>PRK13453 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK05759 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14471 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK13453 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14473 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>PRK07352 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1isn_A323 Crystal Structure Of Merlin Ferm Domain Length = 32 1e-102
1isn_A323 Crystal Structure Of Merlin Ferm Domain Length = 32 2e-30
1ni2_A296 Structure Of The Active Ferm Domain Of Ezrin Length 1e-102
1ni2_A296 Structure Of The Active Ferm Domain Of Ezrin Length 3e-24
1h4r_A314 Crystal Structure Of The Ferm Domain Of Merlin, The 1e-102
1h4r_A314 Crystal Structure Of The Ferm Domain Of Merlin, The 4e-30
1h4r_B314 Crystal Structure Of The Ferm Domain Of Merlin, The 1e-102
1h4r_B314 Crystal Structure Of The Ferm Domain Of Merlin, The 4e-30
3u8z_A300 Human Merlin Ferm Domain Length = 300 1e-102
3u8z_A300 Human Merlin Ferm Domain Length = 300 5e-30
1j19_A317 Crystal Structure Of The Radxin Ferm Domain Complex 1e-101
1j19_A317 Crystal Structure Of The Radxin Ferm Domain Complex 3e-24
1j19_A317 Crystal Structure Of The Radxin Ferm Domain Complex 6e-09
2i1j_A575 Moesin From Spodoptera Frugiperda At 2.1 Angstroms 1e-101
2i1j_A 575 Moesin From Spodoptera Frugiperda At 2.1 Angstroms 4e-13
2d2q_A310 Crystal Structure Of The Dimerized Radixin Ferm Dom 1e-101
2d2q_A310 Crystal Structure Of The Dimerized Radixin Ferm Dom 3e-24
2d2q_A310 Crystal Structure Of The Dimerized Radixin Ferm Dom 1e-08
2emt_A322 Crystal Structure Analysis Of The Radixin Ferm Doma 1e-101
2emt_A322 Crystal Structure Analysis Of The Radixin Ferm Doma 4e-24
2emt_A322 Crystal Structure Analysis Of The Radixin Ferm Doma 2e-09
2d10_A312 Crystal Structure Of The Radixin Ferm Domain Comple 1e-101
2d10_A312 Crystal Structure Of The Radixin Ferm Domain Comple 4e-24
2d10_A312 Crystal Structure Of The Radixin Ferm Domain Comple 1e-08
2zpy_A312 Crystal Structure Of The Mouse Radxin Ferm Domain C 1e-100
2zpy_A312 Crystal Structure Of The Mouse Radxin Ferm Domain C 4e-24
2zpy_A312 Crystal Structure Of The Mouse Radxin Ferm Domain C 1e-08
1gc6_A297 Crystal Structure Of The Radixin Ferm Domain Comple 1e-100
1gc6_A297 Crystal Structure Of The Radixin Ferm Domain Comple 4e-24
1e5w_A346 Structure Of Isolated Ferm Domain And First Long He 3e-99
1e5w_A346 Structure Of Isolated Ferm Domain And First Long He 2e-23
1e5w_A346 Structure Of Isolated Ferm Domain And First Long He 3e-12
1sgh_A297 Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid 1e-98
1sgh_A297 Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid 4e-23
1ef1_A294 Crystal Structure Of The Moesin Ferm DomainTAIL DOM 5e-97
1ef1_A294 Crystal Structure Of The Moesin Ferm DomainTAIL DOM 1e-21
2he7_A283 Ferm Domain Of Epb41l3 (Dal-1) Length = 283 9e-26
3bin_A283 Structure Of The Dal-1 And Tslc1 (372-383) Complex 9e-26
1gg3_A279 Crystal Structure Of The Protein 4.1r Membrane Bind 5e-24
3qij_A296 Primitive-Monoclinic Crystal Structure Of The Ferm 6e-24
1mix_A206 Crystal Structure Of A Ferm Domain Of Talin Length 5e-09
1mix_A206 Crystal Structure Of A Ferm Domain Of Talin Length 2e-05
1miz_B201 Crystal Structure Of An Integrin Beta3-Talin Chimer 1e-08
1miz_B201 Crystal Structure Of An Integrin Beta3-Talin Chimer 2e-05
3ivf_A371 Crystal Structure Of The Talin Head Ferm Domain Len 1e-08
1mk7_B192 Crystal Structure Of An Integrin Beta3-Talin Chimer 2e-08
1mk7_B192 Crystal Structure Of An Integrin Beta3-Talin Chimer 1e-05
2hrj_A121 Nmr Solution Structure Of The F2 Subdomain Of Talin 3e-07
2hrj_A121 Nmr Solution Structure Of The F2 Subdomain Of Talin 6e-04
3g9w_A223 Crystal Structure Of Talin2 F2-f3 In Complex With T 4e-07
3g9w_A223 Crystal Structure Of Talin2 F2-f3 In Complex With T 6e-04
1y19_B202 Structural Basis For Phosphatidylinositol Phosphate 3e-06
4f7g_A222 Crystal Structure Of Talin Autoinhibition Complex L 3e-06
2rq1_A109 Solution Structure Of The 4.1r Ferm Alpha Lobe Doma 2e-05
4dxa_B322 Co-Crystal Structure Of Rap1 In Complex With Krit1 4e-05
3u7d_A322 Crystal Structure Of The Krit1/ccm1 Ferm Domain In 4e-05
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323 Back     alignment and structure 
Iteration: 1

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/254 (69%), Positives = 208/254 (81%), Gaps = 1/254 (0%)
Query: 5   GRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFY 64
           G+DLFDLVCRT+GLRETW+FGLQY   K  +AWLK+DKKV D  +S +    F FLAKFY
Sbjct: 26  GKDLFDLVCRTLGLRETWFFGLQY-TIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFY 84
Query: 65  AEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPG 124
            E+  EELVQE+TQHLFFLQVK+ IL   +YCPPEASVLLASYAVQAKYGDYD S +K G
Sbjct: 85  PENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRG 144
Query: 125 MLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNY 184
            LA E+LLP+RVI+ YQMTPEMWE+RI  WYA+HRG +RDEAEMEYLKIAQDL+MYGVNY
Sbjct: 145 FLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNY 204
Query: 185 FPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDKSSP 244
           F I NKK T+L LGV ALGL+IY+ EN+LTPK +FPW+EIR+IS+ DK+F IKP+DK   
Sbjct: 205 FTIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKID 264
Query: 245 NFIFFSLKVRMNKL 258
            F F S K+R+NKL
Sbjct: 265 VFKFNSSKLRVNKL 278
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323 Back     alignment and structure
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296 Back     alignment and structure
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296 Back     alignment and structure
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300 Back     alignment and structure
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300 Back     alignment and structure
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317 Back     alignment and structure
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317 Back     alignment and structure
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317 Back     alignment and structure
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575 Back     alignment and structure
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575 Back     alignment and structure
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310 Back     alignment and structure
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310 Back     alignment and structure
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310 Back     alignment and structure
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322 Back     alignment and structure
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322 Back     alignment and structure
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322 Back     alignment and structure
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312 Back     alignment and structure
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312 Back     alignment and structure
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312 Back     alignment and structure
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312 Back     alignment and structure
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312 Back     alignment and structure
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312 Back     alignment and structure
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297 Back     alignment and structure
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297 Back     alignment and structure
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346 Back     alignment and structure
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346 Back     alignment and structure
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346 Back     alignment and structure
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297 Back     alignment and structure
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297 Back     alignment and structure
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294 Back     alignment and structure
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294 Back     alignment and structure
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283 Back     alignment and structure
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283 Back     alignment and structure
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding Domain Length = 279 Back     alignment and structure
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of Protein 4.1r Length = 296 Back     alignment and structure
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin Length = 206 Back     alignment and structure
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin Length = 206 Back     alignment and structure
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera Length = 201 Back     alignment and structure
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera Length = 201 Back     alignment and structure
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain Length = 371 Back     alignment and structure
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera Length = 192 Back     alignment and structure
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera Length = 192 Back     alignment and structure
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin Length = 121 Back     alignment and structure
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin Length = 121 Back     alignment and structure
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The Integrin Beta1d Cytoplasmic Tail Length = 223 Back     alignment and structure
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The Integrin Beta1d Cytoplasmic Tail Length = 223 Back     alignment and structure
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase Type I-Gamma Binding To Talin At Focal Adhesions Length = 202 Back     alignment and structure
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex Length = 222 Back     alignment and structure
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain Length = 109 Back     alignment and structure
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 322 Back     alignment and structure
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex With The Heart Of Glass (heg1) Cytoplasmic Tail Length = 322 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 1e-95
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 3e-19
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 1e-93
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 2e-21
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 3e-87
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 3e-10
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 2e-83
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 2e-19
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 4e-80
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 9e-16
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 3e-68
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 2e-16
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 2e-63
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 1e-20
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 5e-59
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 2e-20
3au4_A555 Myosin-X; protein-protein complex, motor protein c 4e-42
3au4_A555 Myosin-X; protein-protein complex, motor protein c 2e-13
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 3e-38
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 8e-06
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 5e-26
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 2e-06
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 6e-25
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 8e-04
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294 Back     alignment and structure
 Score =  289 bits (741), Expect = 1e-95
 Identities = 157/256 (61%), Positives = 209/256 (81%)

Query: 2   RATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLA 61
             TG+ LFD V +T+GLRE W+FGLQY+D KGF  WLKL+KKV  Q +  +    F F A
Sbjct: 20  NTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79

Query: 62  KFYAEDVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTY 121
           KFY EDV+EEL+Q++TQ LFFLQVK+ IL+ DIYCPPE +VLLASYAVQ+KYGD++   +
Sbjct: 80  KFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVH 139

Query: 122 KPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDLDMYG 181
           K G LA + LLPQRV++Q+++  + WE+RI++W+ +HRGM R++A +EYLKIAQDL+MYG
Sbjct: 140 KSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYG 199

Query: 182 VNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVDK 241
           VNYF I NKK ++LWLGV ALGLNIYE+ ++LTPK  FPWSEIR+ISF+DKKF+IKP+DK
Sbjct: 200 VNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDK 259

Query: 242 SSPNFIFFSLKVRMNK 257
            +P+F+F++ ++R+NK
Sbjct: 260 KAPDFVFYAPRLRINK 275
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294 Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314 Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322 Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555 Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555 Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655 Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655 Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392 Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392 Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375 Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 100.0
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 100.0
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 100.0
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 100.0
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 100.0
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 100.0
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 100.0
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 100.0
3au4_A555 Myosin-X; protein-protein complex, motor protein c 100.0
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 100.0
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 100.0
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 100.0
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 100.0
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 99.97
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 99.95
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 99.95
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 99.94
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 99.91
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 99.9
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 99.9
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 99.82
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 99.75
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 99.72
3au4_A555 Myosin-X; protein-protein complex, motor protein c 99.67
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 99.37
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 99.22
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 97.6
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 97.49
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 97.49
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 97.45
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 97.37
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 97.15
2lbb_A96 Acyl COA binding protein; protein binding, structu 97.14
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 96.76
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 96.69
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 96.51
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 96.27
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 91.53
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 91.35
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 90.64
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 90.27
2lbb_A96 Acyl COA binding protein; protein binding, structu 89.7
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 88.99
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 88.25
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 87.15
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 87.09
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 84.72
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 83.55
1j0w_A103 Downstream of tyrosine kinase 5; beta strands, ALF 82.55
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 82.17
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
Probab=100.00  E-value=4.3e-67  Score=563.58  Aligned_cols=357  Identities=57%  Similarity=0.955  Sum_probs=326.5

Q ss_pred             CcccHHHHHHHHHHHhCCCccCceeEEEEcCCCcccccccchhhhccCccCCCceeEEEEeeeeccCchhhhcchhHHHH
Q psy586            1 WRATGRDLFDLVCRTVGLRETWYFGLQYEDNKGFIAWLKLDKKVQDQGISNQCTTPFMFLAKFYAEDVAEELVQEVTQHL   80 (472)
Q Consensus         1 p~ttg~eL~~~V~~~lgL~e~~~FGL~~~~~~~~~~wL~~~kkl~~q~~~~~~~~~l~fr~kfy~~~~~~~l~~~~t~~L   80 (472)
                      |+|||+||++.||.+|||++.+||||+|.++++..+||++++++.+|+++.+.|+.|+||++|||+++...+.+++|++|
T Consensus        22 ~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRvkfy~~~~~~~l~d~~t~~L  101 (575)
T 2i1j_A           22 QTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKL  101 (575)
T ss_dssp             TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEESSCCSSHHHHCCSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEEEEcCCChhhhcCCHHHHHH
Confidence            68999999999999999999999999999999999999999999999888889999999999999998744889999999


Q ss_pred             HHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHHHHHHHHHHHhhcC
Q psy586           81 FFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRG  160 (472)
Q Consensus        81 lylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~e~~I~~~h~~~~g  160 (472)
                      ||+|+++||+.|++||+.++++.||||++|+++|||+++.|.++|+....|+|.+++.+++++++.|+.+|..+|+++.|
T Consensus       102 lYlQvk~dIl~G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G  181 (575)
T 2i1j_A          102 FYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRG  181 (575)
T ss_dssp             HHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcccCCCceEEeeeecCCCceEEEecCCceEEEecCCccccceeeecccccceeecceeeEEEecC
Q psy586          161 MSRDEAEMEYLKIAQDLDMYGVNYFPISNKKDTDLWLGVTALGLNIYEKENKLTPKTTFPWSEIRHISFDDKKFIIKPVD  240 (472)
Q Consensus       161 ~s~~eA~~~yLkiaq~l~~yG~~~F~vk~~~~~~~~LgV~~~GI~i~~~~~k~~p~~~f~ws~I~~~sf~~kkF~I~~~d  240 (472)
                      ||+.+|+..||++|++||+||++||.|+++.|+++||||++.||++|+++++.+|..+|||++|.+|+|++++|.|.+.+
T Consensus       182 ~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~~~k~~~l~~f~w~~I~~isf~~k~F~I~~~~  261 (575)
T 2i1j_A          182 MLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPID  261 (575)
T ss_dssp             CCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEETTCSSSCSEEEEGGGEEEEEEETTEEEEEESC
T ss_pred             CCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeCCCCcccceEecHHHhhcccCCCCeEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999987789999999999999999999999988


Q ss_pred             CCCCceeeehhhhhhhhhcCcccCCCcchhhhhhhcchhhhhCCCCCCCCCCCcccccccCChhhhhhhcCChhHHHHHH
Q psy586          241 KSSPNFIFFSLKVRMNKLYGDYDDSTYKPGMLASEDLLPQRYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMWEDRI  320 (472)
Q Consensus       241 ~~~~~~vF~t~q~r~~~l~g~l~c~~~~~~~Las~~~~Qae~GDy~~~~~~~~yl~~~~~lP~~~~~~~~~~~~~~~~~I  320 (472)
                      ....+++|++++.+.++.                                                              
T Consensus       262 ~~~~~l~F~t~~~~~ak~--------------------------------------------------------------  279 (575)
T 2i1j_A          262 KKAPDFVFFAPRVRVNKR--------------------------------------------------------------  279 (575)
T ss_dssp             TTSCCEEEECSCHHHHHH--------------------------------------------------------------
T ss_pred             CCcceeEEEeCCchhHHH--------------------------------------------------------------
Confidence            766789999998766554                                                              


Q ss_pred             HHHHHhccCCChhHHHHHHHHHhhhccccCcceeecceeeeEEeccCccccccCCCCHHHHHHHhhhhhhhhhhhhHHhh
Q psy586          321 KIWYADHRGMSRDEAEMEYLKIAQDLDMYGVNYFPISILDLCIGNHDLFMRRRKPDTMEIQQMKSQAKEEKSRRQIERNK  400 (472)
Q Consensus       321 ~~~h~~~~G~s~~eAe~~yL~~a~~L~~YGv~~~~v~~~gi~i~~~~~~~~~~~~f~w~~i~~~s~~rk~f~i~~~~~~~  400 (472)
                                                           .+.+|++.|.+++.++.+.+....+|.+.+|.....|..||++
T Consensus       280 -------------------------------------i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~  322 (575)
T 2i1j_A          280 -------------------------------------ILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREK  322 (575)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                 4445677788888889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy586          401 LAREKQLREAAEREKCAMEQRLVQYQEEIRLANEALKCVKVSEREAAEREKCAMEQ  456 (472)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (472)
                      |++|+++|+++||++.+++.++.++|+++++|+++|.++.+++++.+|+.+.+.++
T Consensus       323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e  378 (575)
T 2i1j_A          323 LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA  378 (575)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888887776655443
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2 Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d1h4ra1111 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) 2e-40
d1h4ra1111 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) 5e-20
d1ef1a1111 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [ 3e-38
d1ef1a1111 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [ 3e-18
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 1e-32
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 2e-14
d1gg3a1106 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1 2e-32
d1gg3a1106 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1 2e-14
d1ef1a299 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) 5e-28
d1ef1a299 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) 8e-04
d1h4ra299 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) 6e-28
d1ef1a384 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [Ta 5e-21
d2al6a1123 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic 9e-20
d2al6a1123 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic 5e-11
d1h4ra384 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [ 3e-18
d1gg3a381 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R 7e-18
d1gg3a292 b.55.1.5 (A:188-279) Erythroid membrane protein 4. 2e-17
d1mixa292 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus 3e-04
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 2e-40
 Identities = 86/111 (77%), Positives = 96/111 (86%)

Query: 67  DVAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGML 126
           +  EELVQE+TQHLFFLQVK+ IL   IYCPPEASVLLASYAVQAKYGDYD S +K G L
Sbjct: 1   NAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFL 60

Query: 127 ASEDLLPQRVIDQYQMTPEMWEDRIKIWYADHRGMSRDEAEMEYLKIAQDL 177
           A E+LLP+RVI+ YQMTPEMWE+RI  WYA+HRG +RDEAEMEYLKIAQDL
Sbjct: 61  AQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123 Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123 Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.93
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 99.93
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 99.88
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.87
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 99.86
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.79
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.73
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 99.71
d1h4ra384 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1gg3a381 Erythroid membrane protein 4.1R {Human (Homo sapie 99.65
d1h4ra299 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1ef1a299 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.63
d1gg3a292 Erythroid membrane protein 4.1R {Human (Homo sapie 99.23
d1mixa292 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 98.64
d1h4ra299 Merlin {Human (Homo sapiens) [TaxId: 9606]} 98.58
d1ef1a299 Moesin {Human (Homo sapiens) [TaxId: 9606]} 98.57
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 97.6
d1gg3a292 Erythroid membrane protein 4.1R {Human (Homo sapie 97.39
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 96.83
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 95.48
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 94.9
d2al6a3100 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 94.74
d1j0wa_99 Downstream of tyrosine kinase 5, Dok-5 {Human (Hom 93.95
d1xr0b_129 FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [Ta 92.54
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 91.06
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-27  Score=198.26  Aligned_cols=110  Identities=78%  Similarity=1.236  Sum_probs=105.0

Q ss_pred             chhhhcchhHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhCCCCCCCCccCcCcccccCchHHHhhcCCCHHHH
Q psy586           68 VAEELVQEVTQHLFFLQVKQAILSMDIYCPPEASVLLASYAVQAKYGDYDDSTYKPGMLASEDLLPQRVIDQYQMTPEMW  147 (472)
Q Consensus        68 ~~~~l~~~~t~~LlylQvk~~iL~g~~~c~~e~av~LAAl~~Qa~~Gd~~~~~~~~~~l~~~~~lP~~v~~~~~~~~~~~  147 (472)
                      ...++.|++||++||+|+|+||++|++||+.++|+.||||++||++|||+++.|.++|+....|+|..++.....+.+.|
T Consensus         2 ~e~~L~~e~tr~l~ylQlr~dil~G~~~~~~~~a~~LAal~~Qae~GD~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~   81 (111)
T d1h4ra1           2 AEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMW   81 (111)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhCCCChhhcccchhhhhhcCCchHHHHhhccHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999988888889999


Q ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q psy586          148 EDRIKIWYADHRGMSRDEAEMEYLKIAQDL  177 (472)
Q Consensus       148 e~~I~~~h~~~~g~s~~eA~~~yLkiaq~l  177 (472)
                      +++|...|+.++|||+.+|+..||++|++|
T Consensus        82 ~~~I~~~hk~l~G~s~~~A~~~yL~~~~~L  111 (111)
T d1h4ra1          82 EERITAWYAEHRGRARDEAEMEYLKIAQDL  111 (111)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999986
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure