Psyllid ID: psy5911
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1242 | 2.2.26 [Sep-21-2011] | |||||||
| Q05FS8 | 602 | Chaperone protein DnaK OS | yes | N/A | 0.476 | 0.983 | 0.902 | 0.0 | |
| A1U614 | 641 | Chaperone protein DnaK OS | yes | N/A | 0.476 | 0.923 | 0.706 | 0.0 | |
| Q1QSX0 | 644 | Chaperone protein DnaK OS | yes | N/A | 0.476 | 0.919 | 0.711 | 0.0 | |
| Q2SMM8 | 642 | Chaperone protein DnaK OS | yes | N/A | 0.475 | 0.920 | 0.699 | 0.0 | |
| A6W2D2 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.476 | 0.929 | 0.712 | 0.0 | |
| A6VCL8 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.459 | 0.896 | 0.711 | 0.0 | |
| A4VPQ5 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.459 | 0.896 | 0.709 | 0.0 | |
| Q9HV43 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.459 | 0.896 | 0.711 | 0.0 | |
| Q02FR1 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.459 | 0.896 | 0.711 | 0.0 | |
| B7V1H3 | 637 | Chaperone protein DnaK OS | yes | N/A | 0.459 | 0.896 | 0.711 | 0.0 |
| >sp|Q05FS8|DNAK_CARRP Chaperone protein DnaK OS=Carsonella ruddii (strain PV) GN=dnaK PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/592 (90%), Positives = 568/592 (95%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSC+AVL+NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCIAVLSNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D+IVQKDIKMVPYKI++++NGDAWVEVKD+ APPQISAEILKKMK TAE
Sbjct: 70 KRLIGRKFKDDIVQKDIKMVPYKIISSENGDAWVEVKDKKLAPPQISAEILKKMKITAEN 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FLNEK+ KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 FLNEKVTKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKNDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIANVDGETQFEVLSTNGDTFLGGEDFD+RIIN+LIYEFKIENG
Sbjct: 190 IAVYDLGGGTFDISIIEIANVDGETQFEVLSTNGDTFLGGEDFDIRIINNLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++LSGDSLAMQRLKEAAEKAKIELS+ EQTDINLPYITADKNGPKHLN+KITRSKLESLV
Sbjct: 250 INLSGDSLAMQRLKEAAEKAKIELSSVEQTDINLPYITADKNGPKHLNIKITRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE+ALNDAKI K+KI EIILVGGQTRMPLVQKMVS+FFEK VKKDINPDE
Sbjct: 310 EDLILKSLKPCEIALNDAKISKNKIDEIILVGGQTRMPLVQKMVSDFFEKVVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GASVQAGVLSGVVKDVLLLDVTPLTLGIETMGG+MTPLIEKNTTIPT+KTQVFSTA
Sbjct: 370 AVAIGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGIMTPLIEKNTTIPTKKTQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQTSVTIHTLQGERKKA QNKSLGKFDLN+ISPAPRGVPQIEVSFDLDANGILNVTAK
Sbjct: 430 EDNQTSVTIHTLQGERKKALQNKSLGKFDLNNISPAPRGVPQIEVSFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTG EQSI+IKSSGGLSE+EIENMIKDAE N E+DKKFEELVKC+NEADSTISIVKK
Sbjct: 490 DKKTGVEQSIVIKSSGGLSELEIENMIKDAEANLEIDKKFEELVKCRNEADSTISIVKKK 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDEN KI DEE+ SIEKSISNLELLIKGDDI+ IKK NE+LLK+S+NIIKK
Sbjct: 550 LKDENLKILDEERVSIEKSISNLELLIKGDDIDSIKKENEELLKLSDNIIKK 601
|
Acts as a chaperone. Carsonella ruddii (strain PV) (taxid: 387662) |
| >sp|A1U614|DNAK_MARAV Chaperone protein DnaK OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/592 (70%), Positives = 511/592 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ K +VIEN+EG RTTPS++ YT+DN +VG AKRQA+TNP+NTLYAI
Sbjct: 10 GTTNSCVAIMDGDKVKVIENAEGDRTTPSIIAYTDDNETLVGQSAKRQAVTNPHNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D++VQKDIKMVPYKI ADNGDAWVEVK Q APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEDDVVQKDIKMVPYKIAKADNGDAWVEVKGQKMAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEV RIINEPTAAALAYGLDKK DR
Sbjct: 130 YLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKKSGDRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+ VYDLGGGTFD+S+IEIA+VDGE QFEVL+TNGDTFLGGEDFD+++I +L +FK ++G
Sbjct: 190 VAVYDLGGGTFDLSIIEIADVDGEHQFEVLATNGDTFLGGEDFDLKVIEYLADQFKKDSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL GDSLAMQRLKEAAEKAKIELS+++QTD+NLPYITAD +GPKH+NVK+TR+KLESLV
Sbjct: 250 IDLRGDSLAMQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPKHMNVKLTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ +SL+PC+VAL DA + +I E+ILVGGQTRMPLVQ+ V EFF KE +KD+NPDE
Sbjct: 310 EDLVQRSLEPCKVALQDAGMKAGEIDEVILVGGQTRMPLVQEKVKEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++Q VLSG VKDVLLLDVTPLTLGIETMGGV TPLIEKNTTIPT+K+Q+FSTA
Sbjct: 370 AVAMGAAIQGAVLSGDVKDVLLLDVTPLTLGIETMGGVATPLIEKNTTIPTKKSQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQT+VTIH +QGERK+A+QNKSLG+FDL DI PAPRGVPQIEV+FD+DANGILNV+AK
Sbjct: 430 DDNQTAVTIHVVQGERKQAAQNKSLGRFDLADIPPAPRGVPQIEVTFDIDANGILNVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+S GL++ EIE M++DAE N+E D+KFEELV+ +N+ D+ + V+K
Sbjct: 490 DKATGKEQSIVIKASSGLNDDEIEKMVRDAEANAEEDRKFEELVQARNQGDAMVHAVRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L + K++D EKESIE +I +LE ++G D E I+ + L ++S + +K
Sbjct: 550 LSEAGDKVSDSEKESIEAAIKDLEEALEGSDKEAIEAKTQKLTEVSSELAQK 601
|
Acts as a chaperone. Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) |
| >sp|Q1QSX0|DNAK_CHRSD Chaperone protein DnaK OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/592 (71%), Positives = 505/592 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L+ G +VIEN+EG RTTPS++ YT+D +VG AKRQA+TNP+NTLYAI
Sbjct: 10 GTTNSCVAILDGGNAKVIENAEGARTTPSIIAYTDDGETLVGQAAKRQAVTNPSNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D++VQKDIKMVPY I ADNGDAWVEVK APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRKFKDDVVQKDIKMVPYTIAEADNGDAWVEVKGNKLAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E++ +AVITVPAYFNDSQRQATKDAG+IAGLEV RIINEPTAAALAYG+DK D+
Sbjct: 130 YLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKARGDKT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IE+A+VDGETQFEVL+TNGDTFLGGEDFD+++I++L+ +FK ++G
Sbjct: 190 IAVYDLGGGTFDISIIEVADVDGETQFEVLATNGDTFLGGEDFDLKLIDYLVQQFKSDSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGDSLAMQRLKEAAEKAKIELS A+QT++NLPYITAD GPKHLNVK+TR+KLESLV
Sbjct: 250 IDLSGDSLAMQRLKEAAEKAKIELSAAQQTEVNLPYITADNTGPKHLNVKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
E+L+ SL PC+ AL+DA + S+I E+ILVGGQTRMPLVQK V++FF K+ +KD+NPDE
Sbjct: 310 EELVQNSLAPCKTALSDAGLSASEIDEVILVGGQTRMPLVQKKVADFFGKDARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q GVL G VKDVLLLDVTPLTLGIET+GGVMTPLIEKNTTIPT+KTQVFSTA
Sbjct: 370 AVAVGAAIQGGVLGGDVKDVLLLDVTPLTLGIETLGGVMTPLIEKNTTIPTKKTQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQT+VTIH LQGERK++S NKSLG+FDL DI PAPRGVPQIEV+FDLDANGILNV+AK
Sbjct: 430 DDNQTAVTIHVLQGERKQSSGNKSLGRFDLADIPPAPRGVPQIEVAFDLDANGILNVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+SGGLS+ EI+ M+KDAE + DKKFEELV+ +N+AD + +K
Sbjct: 490 DKATGKEQSIVIKASGGLSDEEIDQMVKDAEAHEAEDKKFEELVQLRNQADGMVHAARKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L++ K+ EKE IE +IS LE KGDD E I+ + L + S N+ +K
Sbjct: 550 LEEAGDKVDASEKEQIETAISELEEATKGDDQEHIQAKLDALTEASGNLAQK 601
|
Acts as a chaperone. Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398) |
| >sp|Q2SMM8|DNAK_HAHCH Chaperone protein DnaK OS=Hahella chejuensis (strain KCTC 2396) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/592 (69%), Positives = 501/592 (84%), Gaps = 1/592 (0%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L KP+VIENSEGGRTTPS+V YT D+ +VG AKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAILEGDKPRVIENSEGGRTTPSIVAYT-DDETLVGQSAKRQAVTNPTNTLFAI 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D++VQKDIKMVPY I ADNGDAWV+VK + APPQISAE+LKKMK TAE
Sbjct: 69 KRLIGRRFEDDVVQKDIKMVPYTIAKADNGDAWVDVKGKKMAPPQISAEVLKKMKKTAED 128
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FL EK+ +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYG+DKK DR
Sbjct: 129 FLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKKGGDRK 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+ VYDLGGGTFDIS+IEIA+VDGE QFEVL+TNGDTFLGGEDFD+R+I++L EFK ++G
Sbjct: 189 VAVYDLGGGTFDISIIEIADVDGEMQFEVLATNGDTFLGGEDFDLRLIDYLAQEFKKDSG 248
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL GD LAMQRLKEAAEKAKIELS+++QTD+NLPYITAD +GPKHLNVK+TR+KLESLV
Sbjct: 249 IDLKGDPLAMQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPKHLNVKVTRAKLESLV 308
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
E+L+ +SL+PC +AL D+ S+I E+ILVGGQTRMPLVQ V++FF KE +KD+NPDE
Sbjct: 309 EELVERSLEPCRIALKDSGCSSSEIDEVILVGGQTRMPLVQSKVADFFGKEARKDVNPDE 368
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++Q VLSG VKDVLLLDVTPL+L IETMGGV TP+IEKNTTIPT+K+QVFSTA
Sbjct: 369 AVAIGAAIQGAVLSGDVKDVLLLDVTPLSLSIETMGGVSTPIIEKNTTIPTKKSQVFSTA 428
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQT+VTIH LQGERK+A NKSLG+FDL + PAPRGVPQ+EV+FD+DANGI++V+AK
Sbjct: 429 EDNQTAVTIHVLQGERKQAQMNKSLGRFDLTGLPPAPRGVPQVEVTFDIDANGIMHVSAK 488
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+S GLSE EI+ M++DAE ++ DKKFEEL +N+AD+ + +K
Sbjct: 489 DKATGKEQSIVIKASSGLSEDEIDKMVQDAEAHAAEDKKFEELAASRNQADALVHATQKT 548
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKD K+T EEK +IE +I LE IKGDD E I+ + L + S ++ +K
Sbjct: 549 LKDAGDKVTAEEKVAIEAAIKELEEAIKGDDKEAIESRMQKLSEASSSMAQK 600
|
Acts as a chaperone. Hahella chejuensis (strain KCTC 2396) (taxid: 349521) |
| >sp|A6W2D2|DNAK_MARMS Chaperone protein DnaK OS=Marinomonas sp. (strain MWYL1) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/592 (71%), Positives = 492/592 (83%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ K +VIEN+EG RTTPS+V + ED ++VG AKRQA+TNP NTL+A+
Sbjct: 10 GTTNSCVAVLDGEKARVIENAEGDRTTPSIVAFAEDGEVLVGQSAKRQAVTNPTNTLFAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D++VQKDI MVPYKI+AADNGDAWVEVK APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRKFKDDVVQKDISMVPYKIIAADNGDAWVEVKGDKKAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEV RIINEPTAAALAYGLDK D
Sbjct: 130 YLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKSSGDST 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIA+VDGE QFEVLSTNGDTFLGGEDFDMR+I +L EFK +G
Sbjct: 190 IAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDMRVIEYLAAEFKKSSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LA+QRLKEA EKAK+ELS++ QT++NLPYITAD GPKHLNVK+TRSKLESLV
Sbjct: 250 IDLHNDPLALQRLKEAGEKAKVELSSSSQTEVNLPYITADATGPKHLNVKLTRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
E+L+ KSL+PC AL DA + S I E+ILVGGQTRMPLVQ V+EFF KE +KD+NPDE
Sbjct: 310 EELVLKSLEPCRQALKDADLTASDIDEVILVGGQTRMPLVQAKVTEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GAS+Q VLSG VKDVLLLDVTPL+LGIETMGGVMT LIEKNTTIPT+K+Q FSTA
Sbjct: 370 AVAIGASIQGAVLSGDVKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQTFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQ +VTIH LQGERK+ASQNKSLG+FDL DI PAPRGVPQIEVSFD+DANGIL+V+AK
Sbjct: 430 EDNQNAVTIHALQGERKQASQNKSLGRFDLADIPPAPRGVPQIEVSFDIDANGILSVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IKSS GLS+ E+E M++DAE N+E D+KFEELV+ +N AD I +K
Sbjct: 490 DKATGKEQSIVIKSSSGLSDEEVEKMVQDAEANAEEDRKFEELVQVRNTADGMIHATRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L D K T EEKE+IE +I+ LE + +D E I++ L + S + +K
Sbjct: 550 LVDAGDKATAEEKEAIETAITELEEALTSNDKEKIEEKTNALTQASGTLAQK 601
|
Acts as a chaperone. Marinomonas sp. (strain MWYL1) (taxid: 400668) |
| >sp|A6VCL8|DNAK_PSEA7 Chaperone protein DnaK OS=Pseudomonas aeruginosa (strain PA7) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/571 (71%), Positives = 490/571 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L NG +VIEN+EG RTTPS++ YT D +VG PAKRQA+TNP NTLYA+
Sbjct: 10 GTTNSCVAILENGNVKVIENAEGARTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ + +VQKDI+MVPY IV ADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEENVVQKDIQMVPYSIVKADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYGLDK D
Sbjct: 130 YLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKAKGDHT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
++VYDLGGGTFD+SVIEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L+ EFK E+G
Sbjct: 190 VIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++L GD LAMQRLKEAAEKAKIELS+ +QTD+NLPY+TAD +GPKHLNVK++R+KLESLV
Sbjct: 250 INLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNLPYVTADASGPKHLNVKVSRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC AL DA +D S I E+ILVGGQTRMPLVQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVQRTIEPCRTALKDAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q VL+G VKDVLLLDVTPLTLGIET+GGVMT LIEKNTTIPT+K+QVFSTA
Sbjct: 370 AVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ +VTIH LQGERK+A+QNKSLGKFDL DI PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 430 DDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+QSI+IK+S GLSE EI+ M++DAE N+E D+KFEEL +N+ D+ + +K
Sbjct: 490 DKATGKQQSIVIKASSGLSEDEIQQMVRDAEANAEEDRKFEELAAARNQGDALVHATRKM 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDD 1221
+ + K T E+K +IEK++ LE+ +KGDD
Sbjct: 550 ITEAGDKATAEDKATIEKALGELEVAVKGDD 580
|
Acts as a chaperone. Pseudomonas aeruginosa (strain PA7) (taxid: 381754) |
| >sp|A4VPQ5|DNAK_PSEU5 Chaperone protein DnaK OS=Pseudomonas stutzeri (strain A1501) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/571 (70%), Positives = 497/571 (87%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCV+++ NG +VIEN+EGGRTTPS++ YT D +VG AKRQA+TNP NTLYA+
Sbjct: 10 GTTNSCVSIMENGNVKVIENAEGGRTTPSIIAYTNDGETLVGQSAKRQAVTNPQNTLYAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ +++VQKDIKMVPY IV ADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEEDVVQKDIKMVPYTIVKADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYG+DK D
Sbjct: 130 YLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDKAKGDHT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
++VYDLGGGTFD+SVIEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L+ EFK E G
Sbjct: 190 VIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKETG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++L GD LAMQRLKEAAEKAKIELS+++QTD+NLPYITAD +GPKHLNVKI+R+KLESLV
Sbjct: 250 MNLKGDPLAMQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPKHLNVKISRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC +AL DA ID SKI+++ILVGGQTRMPLVQ+ V+EFF KE +KD+NPDE
Sbjct: 310 EDLVERTIEPCRIALKDAGIDVSKINDVILVGGQTRMPLVQQKVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++Q VL+G VKDVLLLDV+PLTLGIET+GGVMTPLIEKNTTIPT+K+QVFSTA
Sbjct: 370 AVAMGAAIQGAVLAGDVKDVLLLDVSPLTLGIETLGGVMTPLIEKNTTIPTKKSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ++VTIH LQGERK+A+QNKSLG+FDL +I PAPRG+PQIEV+FD+DANGIL+V+AK
Sbjct: 430 DDNQSAVTIHVLQGERKQAAQNKSLGRFDLAEIPPAPRGMPQIEVTFDIDANGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+QSI+IK++ GLSE EIE M++DAE N+E D+KFEEL +N+ D + +K
Sbjct: 490 DKATGKQQSIVIKANSGLSEEEIEQMVRDAEANAEEDRKFEELATARNQGDQLVHATRKM 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDD 1221
L + K +D++K +IEK++S LEL IKGDD
Sbjct: 550 LTEAGDKASDDDKAAIEKALSELELAIKGDD 580
|
Acts as a chaperone. Pseudomonas stutzeri (strain A1501) (taxid: 379731) |
| >sp|Q9HV43|DNAK_PSEAE Chaperone protein DnaK OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/571 (71%), Positives = 489/571 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L NG +VIEN+EG RTTPS++ YT D +VG PAKRQA+TNP NTLYA+
Sbjct: 10 GTTNSCVAILENGNVKVIENAEGARTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ + +VQKDI+MVPY IV ADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEENVVQKDIQMVPYSIVKADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYGLDK D
Sbjct: 130 YLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKAKGDHT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
++VYDLGGGTFD+SVIEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L+ EFK E+G
Sbjct: 190 VIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++L GD LAMQRLKEAAEKAKIELS+ +QTD+NLPY+TAD +GPKHLNVK++R+KLESLV
Sbjct: 250 INLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNLPYVTADASGPKHLNVKVSRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC AL DA +D S I E+ILVGGQTRMPLVQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVQRTIEPCRTALKDAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q VL+G VKDVLLLDVTPLTLGIET+GGVMT LIEKNTTIPT+K+QVFSTA
Sbjct: 370 AVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ +VTIH LQGERK+A+QNKSLGKFDL DI PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 430 DDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+QSI+IK+S GLSE EI+ M++DAE N+E D+KFEEL +N+ D+ + +K
Sbjct: 490 DKATGKQQSIVIKASSGLSEDEIQQMVRDAEANAEEDRKFEELAAARNQGDALVHATRKM 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDD 1221
+ + K T E+K +IEK++ LE +KGDD
Sbjct: 550 ITEAGDKATAEDKATIEKALGELEAAVKGDD 580
|
Acts as a chaperone. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) |
| >sp|Q02FR1|DNAK_PSEAB Chaperone protein DnaK OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/571 (71%), Positives = 489/571 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L NG +VIEN+EG RTTPS++ YT D +VG PAKRQA+TNP NTLYA+
Sbjct: 10 GTTNSCVAILENGNVKVIENAEGARTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ + +VQKDI+MVPY IV ADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEENVVQKDIQMVPYSIVKADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYGLDK D
Sbjct: 130 YLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKAKGDHT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
++VYDLGGGTFD+SVIEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L+ EFK E+G
Sbjct: 190 VIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++L GD LAMQRLKEAAEKAKIELS+ +QTD+NLPY+TAD +GPKHLNVK++R+KLESLV
Sbjct: 250 INLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNLPYVTADASGPKHLNVKVSRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC AL DA +D S I E+ILVGGQTRMPLVQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVQRTIEPCRTALKDAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q VL+G VKDVLLLDVTPLTLGIET+GGVMT LIEKNTTIPT+K+QVFSTA
Sbjct: 370 AVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ +VTIH LQGERK+A+QNKSLGKFDL DI PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 430 DDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+QSI+IK+S GLSE EI+ M++DAE N+E D+KFEEL +N+ D+ + +K
Sbjct: 490 DKATGKQQSIVIKASSGLSEDEIQQMVRDAEANAEEDRKFEELAAARNQGDALVHATRKM 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDD 1221
+ + K T E+K +IEK++ LE +KGDD
Sbjct: 550 ITEAGDKATAEDKATIEKALGELEAAVKGDD 580
|
Acts as a chaperone. Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963) |
| >sp|B7V1H3|DNAK_PSEA8 Chaperone protein DnaK OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/571 (71%), Positives = 489/571 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+L NG +VIEN+EG RTTPS++ YT D +VG PAKRQA+TNP NTLYA+
Sbjct: 10 GTTNSCVAILENGNVKVIENAEGARTTPSIIAYTNDGETLVGQPAKRQAVTNPQNTLYAV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ + +VQKDI+MVPY IV ADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEENVVQKDIQMVPYSIVKADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYGLDK D
Sbjct: 130 YLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKAKGDHT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
++VYDLGGGTFD+SVIEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L+ EFK E+G
Sbjct: 190 VIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKESG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++L GD LAMQRLKEAAEKAKIELS+ +QTD+NLPY+TAD +GPKHLNVK++R+KLESLV
Sbjct: 250 INLKGDPLAMQRLKEAAEKAKIELSSTQQTDVNLPYVTADASGPKHLNVKVSRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC AL DA +D S I E+ILVGGQTRMPLVQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVQRTIEPCRTALKDAGLDVSDIHEVILVGGQTRMPLVQKTVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q VL+G VKDVLLLDVTPLTLGIET+GGVMT LIEKNTTIPT+K+QVFSTA
Sbjct: 370 AVAVGAAIQGAVLAGDVKDVLLLDVTPLTLGIETLGGVMTGLIEKNTTIPTKKSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ +VTIH LQGERK+A+QNKSLGKFDL DI PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 430 DDNQGAVTIHVLQGERKQAAQNKSLGKFDLADIPPAPRGVPQIEVTFDIDANGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+QSI+IK+S GLSE EI+ M++DAE N+E D+KFEEL +N+ D+ + +K
Sbjct: 490 DKATGKQQSIVIKASSGLSEDEIQQMVRDAEANAEEDRKFEELAAARNQGDALVHATRKM 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDD 1221
+ + K T E+K +IEK++ LE +KGDD
Sbjct: 550 ITEAGDKATAEDKATIEKALGELEAAVKGDD 580
|
Acts as a chaperone. Pseudomonas aeruginosa (strain LESB58) (taxid: 557722) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1242 | ||||||
| 400404337 | 601 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.985 | 0.935 | 0.0 | |
| 400404563 | 601 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.985 | 0.932 | 0.0 | |
| 400404785 | 602 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.983 | 0.908 | 0.0 | |
| 116334964 | 602 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.983 | 0.902 | 0.0 | |
| 400404099 | 602 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.983 | 0.895 | 0.0 | |
| 400403861 | 602 | chaperone protein DnaK [Candidatus Carso | 0.476 | 0.983 | 0.895 | 0.0 | |
| 402575003 | 641 | chaperone protein DnaK [Candidatus Porti | 0.467 | 0.906 | 0.749 | 0.0 | |
| 352104757 | 644 | molecular chaperone DnaK [Halomonas sp. | 0.470 | 0.906 | 0.712 | 0.0 | |
| 448747654 | 644 | Chaperone DnaK [Halomonas titanicae BH1] | 0.470 | 0.906 | 0.712 | 0.0 | |
| 359394219 | 644 | Chaperone protein dnaK [Halomonas bolivi | 0.476 | 0.919 | 0.709 | 0.0 |
| >gi|400404337|ref|YP_006587357.1| chaperone protein DnaK [Candidatus Carsonella ruddii HC isolate Thao2000] gi|400362858|gb|AFP83929.1| chaperone protein DnaK [Candidatus Carsonella ruddii HC isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/592 (93%), Positives = 578/592 (97%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL NGKPQVIENSEGGRTTPS+VGYT+DNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCVAVLKNGKPQVIENSEGGRTTPSIVGYTDDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D+IVQKDIKMVPYKI++A+NGDAWVE+KD+ APPQISAEILKKMKSTAET
Sbjct: 70 KRLIGRKFLDDIVQKDIKMVPYKIISAENGDAWVEIKDKRLAPPQISAEILKKMKSTAET 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+LNEKI KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 YLNEKINKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKEDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
IVVYDLGGGTFDIS+IEIANV+GETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG
Sbjct: 190 IVVYDLGGGTFDISIIEIANVEGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
VDLSGDSLAMQRLKE+AEKAKIELSNAEQTDINLPYITADKNGPKHLN+KITRSKLESLV
Sbjct: 250 VDLSGDSLAMQRLKESAEKAKIELSNAEQTDINLPYITADKNGPKHLNIKITRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE ALNDAKIDK+KI EIILVGGQTRMPLVQKMVS+FFEKEVKKDINPDE
Sbjct: 310 EDLIIKSLKPCETALNDAKIDKNKIDEIILVGGQTRMPLVQKMVSDFFEKEVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQ+FSTA
Sbjct: 370 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK
Sbjct: 430 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTGKEQSIIIKSSGGLSE+EIENMIKDAE+NSELDKKFEELVKCKNEADSTISIVKKN
Sbjct: 490 DKKTGKEQSIIIKSSGGLSELEIENMIKDAEINSELDKKFEELVKCKNEADSTISIVKKN 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDE KI+DEEK +IEKSISNLELLIKG+DIE IKKGNEDLLK+SENIIKK
Sbjct: 550 LKDEKIKISDEEKITIEKSISNLELLIKGEDIESIKKGNEDLLKLSENIIKK 601
|
Source: Candidatus Carsonella ruddii HC isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404563|ref|YP_006587538.1| chaperone protein DnaK [Candidatus Carsonella ruddii HT isolate Thao2000] gi|400363039|gb|AFP84109.1| chaperone protein DnaK [Candidatus Carsonella ruddii HT isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/592 (93%), Positives = 578/592 (97%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL NGKPQVIENSEGGRTTPS+VGYT+DNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCVAVLKNGKPQVIENSEGGRTTPSIVGYTDDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D+IVQKDIKMVPYKI++A+NGDAWVEVKD+ APPQISAEILKKMKSTAET
Sbjct: 70 KRLIGRKFLDDIVQKDIKMVPYKIISAENGDAWVEVKDKRLAPPQISAEILKKMKSTAET 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+LNEKI KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 YLNEKISKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKEDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
IVVYDLGGGTFDIS+IEIANV+GETQFEVLSTNGDTFLGGEDFD+RIINHLIYEFKIENG
Sbjct: 190 IVVYDLGGGTFDISIIEIANVEGETQFEVLSTNGDTFLGGEDFDIRIINHLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGDSLAMQRLKE+AEKAKIELSNAEQTD+NLPYITADKNGPKHLN+KITRSKLESLV
Sbjct: 250 IDLSGDSLAMQRLKESAEKAKIELSNAEQTDVNLPYITADKNGPKHLNIKITRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE ALNDAKI+K+KI EIILVGGQTRMPLVQKMVS+FFEKEVKKDINPDE
Sbjct: 310 EDLIIKSLKPCETALNDAKINKNKIDEIILVGGQTRMPLVQKMVSDFFEKEVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQ+FSTA
Sbjct: 370 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK
Sbjct: 430 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTGKEQSIIIKSSGGLSEIEIENMIKDAE+NSELDKKFEELVKCKNEADSTISIVKKN
Sbjct: 490 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAEVNSELDKKFEELVKCKNEADSTISIVKKN 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKD+ KI+DEE+ SIEKSISNLELLIKG+DIE IKKGNEDLLKISENIIKK
Sbjct: 550 LKDDKIKISDEERISIEKSISNLELLIKGEDIESIKKGNEDLLKISENIIKK 601
|
Source: Candidatus Carsonella ruddii HT isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404785|ref|YP_006587717.1| chaperone protein DnaK [Candidatus Carsonella ruddii PC isolate NHV] gi|400363220|gb|AFP84289.1| chaperone protein DnaK [Candidatus Carsonella ruddii PC isolate NHV] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/592 (90%), Positives = 572/592 (96%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVLNNGKPQVIENSEGGRTTPSV+ YTEDNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVISYTEDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+TDEIVQKDIKMVPYKI++A+NGDAWVEVK++ APPQISAEILKKMK TAE+
Sbjct: 70 KRLIGRKFTDEIVQKDIKMVPYKIISAENGDAWVEVKNKKLAPPQISAEILKKMKLTAES 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FLNEKI KAVITVPAYFNDSQRQATKDAGKIAGL+VLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 FLNEKISKAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAYGLDKKKNDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIANVDGETQFEVLSTNGDTFLGGEDFD+RIINHLIYEFKIENG
Sbjct: 190 IAVYDLGGGTFDISIIEIANVDGETQFEVLSTNGDTFLGGEDFDIRIINHLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGDSLAMQRLKEA+EKAKIELSNAEQTDINLPYITADKNGPKHLN+KITRSKLESLV
Sbjct: 250 IDLSGDSLAMQRLKEASEKAKIELSNAEQTDINLPYITADKNGPKHLNIKITRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE+ALNDAKI+K+KI+EIILVGGQTRMP+VQKMVS FFEK+VKKDINPDE
Sbjct: 310 EDLILKSLKPCEIALNDAKINKNKINEIILVGGQTRMPMVQKMVSNFFEKDVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GASVQAGVLSG VKDVLLLDVTPLTLGIETMGG+MTPLIEKNTTIPT+KTQVFSTA
Sbjct: 370 AVAIGASVQAGVLSGAVKDVLLLDVTPLTLGIETMGGIMTPLIEKNTTIPTKKTQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQTSVTIHTLQGERKKA QNKSLGKFDLN+ISPAPRGVPQIEVSFDLDANGILNVTAK
Sbjct: 430 EDNQTSVTIHTLQGERKKALQNKSLGKFDLNNISPAPRGVPQIEVSFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTG EQSIIIKSSGGLSE+EIENMIKDAE N E+DKKFEELVKC+NEADSTIS+VKKN
Sbjct: 490 DKKTGIEQSIIIKSSGGLSELEIENMIKDAEANLEIDKKFEELVKCRNEADSTISLVKKN 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDEN KITDEE+ SIEKSISNLELLIKGDDI IKK NE+LLK+++NIIKK
Sbjct: 550 LKDENNKITDEERISIEKSISNLELLIKGDDIASIKKENEELLKLNDNIIKK 601
|
Source: Candidatus Carsonella ruddii PC isolate NHV Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116334964|ref|YP_802459.1| chaperone protein DnaK [Candidatus Carsonella ruddii PV] gi|123126182|sp|Q05FS8.1|DNAK_CARRP RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70 gi|116235245|dbj|BAF35093.1| chaperone protein DnaK [Candidatus Carsonella ruddii PV] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/592 (90%), Positives = 568/592 (95%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSC+AVL+NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCIAVLSNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D+IVQKDIKMVPYKI++++NGDAWVEVKD+ APPQISAEILKKMK TAE
Sbjct: 70 KRLIGRKFKDDIVQKDIKMVPYKIISSENGDAWVEVKDKKLAPPQISAEILKKMKITAEN 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FLNEK+ KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 FLNEKVTKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKNDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIANVDGETQFEVLSTNGDTFLGGEDFD+RIIN+LIYEFKIENG
Sbjct: 190 IAVYDLGGGTFDISIIEIANVDGETQFEVLSTNGDTFLGGEDFDIRIINNLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++LSGDSLAMQRLKEAAEKAKIELS+ EQTDINLPYITADKNGPKHLN+KITRSKLESLV
Sbjct: 250 INLSGDSLAMQRLKEAAEKAKIELSSVEQTDINLPYITADKNGPKHLNIKITRSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE+ALNDAKI K+KI EIILVGGQTRMPLVQKMVS+FFEK VKKDINPDE
Sbjct: 310 EDLILKSLKPCEIALNDAKISKNKIDEIILVGGQTRMPLVQKMVSDFFEKVVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GASVQAGVLSGVVKDVLLLDVTPLTLGIETMGG+MTPLIEKNTTIPT+KTQVFSTA
Sbjct: 370 AVAIGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGIMTPLIEKNTTIPTKKTQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQTSVTIHTLQGERKKA QNKSLGKFDLN+ISPAPRGVPQIEVSFDLDANGILNVTAK
Sbjct: 430 EDNQTSVTIHTLQGERKKALQNKSLGKFDLNNISPAPRGVPQIEVSFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTG EQSI+IKSSGGLSE+EIENMIKDAE N E+DKKFEELVKC+NEADSTISIVKK
Sbjct: 490 DKKTGVEQSIVIKSSGGLSELEIENMIKDAEANLEIDKKFEELVKCRNEADSTISIVKKK 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDEN KI DEE+ SIEKSISNLELLIKGDDI+ IKK NE+LLK+S+NIIKK
Sbjct: 550 LKDENLKILDEERVSIEKSISNLELLIKGDDIDSIKKENEELLKLSDNIIKK 601
|
Source: Candidatus Carsonella ruddii PV Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400404099|ref|YP_006587167.1| chaperone protein DnaK [Candidatus Carsonella ruddii CS isolate Thao2000] gi|400362667|gb|AFP83739.1| chaperone protein DnaK [Candidatus Carsonella ruddii CS isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/592 (89%), Positives = 564/592 (95%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D IVQKDIKMVPYKI+ ADNGDAWV VK++ APPQISAEILKKMKSTAE+
Sbjct: 70 KRLIGRKFKDNIVQKDIKMVPYKIIEADNGDAWVSVKEKKLAPPQISAEILKKMKSTAES 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FLNEKI KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 FLNEKINKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKNDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIANV+GETQFEVLSTNGDTFLGGEDFD+R+INHLIYEFKIENG
Sbjct: 190 IAVYDLGGGTFDISIIEIANVEGETQFEVLSTNGDTFLGGEDFDIRLINHLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGDSLAMQRLKEAAEKAKIELSN +QTDINLPYITADKNGPKHLN+KIT+SKLESLV
Sbjct: 250 IDLSGDSLAMQRLKEAAEKAKIELSNTDQTDINLPYITADKNGPKHLNLKITKSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE+ALNDAKI+K+KI EIILVGGQTRMPLVQK+VS FFEKEVKKDINPDE
Sbjct: 310 EDLILKSLKPCEIALNDAKINKNKIDEIILVGGQTRMPLVQKLVSNFFEKEVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GASVQAGVL G VKD+LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQ+FSTA
Sbjct: 370 AVAIGASVQAGVLGGTVKDILLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQT+VTIHTLQGERKKASQNKSLGKFDLNDI+ APRGVPQIEV FDLDANGILNVTAK
Sbjct: 430 EDNQTAVTIHTLQGERKKASQNKSLGKFDLNDIAAAPRGVPQIEVLFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTGKEQSIIIKSSGGLSE EIE MIKDAE+N+E DKKFEELVKCKNEADSTIS+++KN
Sbjct: 490 DKKTGKEQSIIIKSSGGLSEAEIETMIKDAEVNAETDKKFEELVKCKNEADSTISLIRKN 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDEN KI DEE+ SIEK IS+LELLIKGDD+ IKK NE+LLKIS+N+IKK
Sbjct: 550 LKDENLKINDEERISIEKKISSLELLIKGDDVLAIKKENEELLKISDNLIKK 601
|
Source: Candidatus Carsonella ruddii CS isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|400403861|ref|YP_006586977.1| chaperone protein DnaK [Candidatus Carsonella ruddii CE isolate Thao2000] gi|400362476|gb|AFP83549.1| chaperone protein DnaK [Candidatus Carsonella ruddii CE isolate Thao2000] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/592 (89%), Positives = 564/592 (95%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP NTLYAI
Sbjct: 10 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPKNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D IVQKDIKMVPYKI+ ADNGDAWV VKD+ APPQISAEILKKMKSTAE+
Sbjct: 70 KRLIGRKFQDNIVQKDIKMVPYKIIEADNGDAWVSVKDKKLAPPQISAEILKKMKSTAES 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FLNEKI KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +DRI
Sbjct: 130 FLNEKINKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKKNDRI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIANV+GETQFEVLSTNGDTFLGGEDFD+R+INHLIYEFKIENG
Sbjct: 190 IAVYDLGGGTFDISIIEIANVEGETQFEVLSTNGDTFLGGEDFDIRLINHLIYEFKIENG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGDSLAMQRLKEAAEKAKIELSN QTDINLPYITADKNGPKHLN+KIT+SKLESLV
Sbjct: 250 IDLSGDSLAMQRLKEAAEKAKIELSNTSQTDINLPYITADKNGPKHLNLKITKSKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI KSLKPCE+ALNDAKI+K+KI EIILVGGQTRMPLVQK+VS+FFEK+VKKDINPDE
Sbjct: 310 EDLILKSLKPCEIALNDAKINKNKIDEIILVGGQTRMPLVQKLVSDFFEKDVKKDINPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GASVQAGVL G VKD+LLLDVTPLTLGIETMGG+MTPLIEKNTTIPTRKTQ+FSTA
Sbjct: 370 AVAIGASVQAGVLGGTVKDILLLDVTPLTLGIETMGGIMTPLIEKNTTIPTRKTQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQT+VTIHTLQGERKKASQNKSLGKFDLNDI+ APRGVPQIEV FDLDANGILNVTAK
Sbjct: 430 EDNQTAVTIHTLQGERKKASQNKSLGKFDLNDIAAAPRGVPQIEVLFDLDANGILNVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTGKEQSIIIKSSGGLSE EIE MIKDAE+N+ DKKFEELVKCKNEADSTIS+V+KN
Sbjct: 490 DKKTGKEQSIIIKSSGGLSESEIETMIKDAEINAATDKKFEELVKCKNEADSTISLVRKN 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LKDEN KI+DEE+ SIEK IS+LELLIKGDDI IKK NE+LLKIS+N+IKK
Sbjct: 550 LKDENVKISDEERISIEKKISSLELLIKGDDILSIKKENEELLKISDNLIKK 601
|
Source: Candidatus Carsonella ruddii CE isolate Thao2000 Species: Candidatus Carsonella ruddii Genus: Candidatus Carsonella Family: Order: Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|402575003|ref|YP_006607895.1| chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|407453020|ref|YP_006732339.1| Chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407681355|ref|YP_006796531.1| chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407681636|ref|YP_006796811.1| Chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|401871807|gb|AFQ23975.1| chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-B-HRs] gi|405779737|gb|AFS18740.1| Chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407242966|gb|AFT80367.1| Chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-QVLC] gi|407243247|gb|AFT80647.1| Chaperone protein DnaK [Candidatus Portiera aleyrodidarum BT-B-HRs] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/587 (74%), Positives = 513/587 (87%), Gaps = 6/587 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL NGK +VIENSEG RTTPS++ YT+DN I++G AKRQA+TNP+NTLYAI
Sbjct: 10 GTTNSCVAVLENGKSRVIENSEGARTTPSIIAYTDDNEILIGQTAKRQAVTNPSNTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRK+ D+IVQKDIKMVPYKIV+A+NGDAWV+VK++ APPQISAEILKKMK TAE
Sbjct: 70 KRLIGRKFNDDIVQKDIKMVPYKIVSAENGDAWVQVKNRKLAPPQISAEILKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EKI +AVITVPAYFNDSQRQATKDAG+IAGL V RIINEPTAAALAYG+DK D+
Sbjct: 130 YLGEKITEAVITVPAYFNDSQRQATKDAGRIAGLNVKRIINEPTAAALAYGMDKNRGDKK 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIA+VDGETQFEV++TNGDTFLGGEDFD+++IN+++ +FK+E+G
Sbjct: 190 IAVYDLGGGTFDISIIEIADVDGETQFEVMATNGDTFLGGEDFDLKLINYIVKQFKLESG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
VDLSGDSLAMQRLKEAAEK KIELS+++QTDINLPYITADK GPKHL +KITR+KLESLV
Sbjct: 250 VDLSGDSLAMQRLKEAAEKGKIELSSSQQTDINLPYITADKTGPKHLTLKITRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI +SL PC+ A++DAK+ +I +IILVGGQTRMPLVQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLIKRSLLPCKKAIDDAKLTTKEIDDIILVGGQTRMPLVQKKVAEFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++Q GVL G VKDVLLLDVTPLTLGIETMGG+MTPLIEKNTTIPT+KTQ+FSTA
Sbjct: 370 AVAMGAAIQGGVLGGDVKDVLLLDVTPLTLGIETMGGIMTPLIEKNTTIPTKKTQIFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQT+VTIH LQGERKKA QNKSLG+FDL DI PAPRG PQIEV+FDLDANGILN+TAK
Sbjct: 430 EDNQTAVTIHALQGERKKALQNKSLGRFDLTDIPPAPRGTPQIEVAFDLDANGILNITAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSIIIKSSGGLSE EI MI+DAE N E DKKFEELV+ +N+AD I ++K
Sbjct: 490 DKATGKEQSIIIKSSGGLSEEEINKMIQDAETNKEEDKKFEELVQTRNQADGMIHTIRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISE 1237
LK+ ++EK +E I+NLE +K DDI+ IK EDL K++E
Sbjct: 550 LKEIK---NEDEKNKLESLINNLEQTLKSDDIKTIK---EDLNKLTE 590
|
Source: Candidatus Portiera aleyrodidarum BT-B-HRs Species: Candidatus Portiera aleyrodidarum Genus: Candidatus Portiera Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|352104757|ref|ZP_08960510.1| molecular chaperone DnaK [Halomonas sp. HAL1] gi|350598679|gb|EHA14789.1| molecular chaperone DnaK [Halomonas sp. HAL1] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/592 (71%), Positives = 510/592 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ +VIEN+EGGRTTPS++ YT+D +VG AKRQA+TNP NTLYAI
Sbjct: 10 GTTNSCVAVLDGDSAKVIENAEGGRTTPSIIAYTDDGETLVGQAAKRQAVTNPENTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D++VQKDIKMVPYKI ADNGDAWVEVK + APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRRFKDDVVQKDIKMVPYKITEADNGDAWVEVKGKKMAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYG+DK D+
Sbjct: 130 YLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDKSRGDKT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIA+VDGETQFEVL+TNGDTFLGGEDFD+ +IN+L+ +FK ++G
Sbjct: 190 IAVYDLGGGTFDISIIEIADVDGETQFEVLATNGDTFLGGEDFDLALINYLVDQFKADSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGD+LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKHLNVK+TR+KLESLV
Sbjct: 250 IDLSGDNLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADNTGPKHLNVKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ +SL+PC++AL DA + S+I E+ILVGGQTRMP+VQK ++FF KE +KD+NPDE
Sbjct: 310 EDLVQRSLEPCKMALKDAGLSASEIDEVILVGGQTRMPMVQKKAADFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q GVL G VKDVLLLDVTPLTLGIET+GGVMTPLIEKNTTIPT+KTQ FSTA
Sbjct: 370 AVAVGAAIQGGVLGGDVKDVLLLDVTPLTLGIETLGGVMTPLIEKNTTIPTKKTQTFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQT+VTIH +QGERK+ SQNKSLG+FDL DI PAPRGVPQIEV+FDLDANGILNV+AK
Sbjct: 430 DDNQTAVTIHAVQGERKQVSQNKSLGRFDLADIPPAPRGVPQIEVAFDLDANGILNVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+S GLSE E+E M++DAE ++E DKKFEELV+ +N+AD I +K
Sbjct: 490 DKATGKEQSIVIKASSGLSEEEVEQMVRDAEAHAEEDKKFEELVQLRNQADGMIHATRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L++ K TD+EK++IE +IS LE +K DD++ I+K + L + S + +K
Sbjct: 550 LEEAGDKATDDEKQAIETAISELEEAVKSDDVDNIQKKLDALTEASGQLAQK 601
|
Source: Halomonas sp. HAL1 Species: Halomonas sp. HAL1 Genus: Halomonas Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|448747654|ref|ZP_21729310.1| Chaperone DnaK [Halomonas titanicae BH1] gi|445564766|gb|ELY20882.1| Chaperone DnaK [Halomonas titanicae BH1] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/592 (71%), Positives = 511/592 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ +VIEN+EGGRTTPS++ YT+D +VG AKRQA+TNP NTLYAI
Sbjct: 10 GTTNSCVAVLDGDSAKVIENAEGGRTTPSIIAYTDDGETLVGQAAKRQAVTNPENTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D++VQKDIKMVPYKI ADNGDAWVEVK + APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRRFKDDVVQKDIKMVPYKISEADNGDAWVEVKGKKMAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYG+DK D+
Sbjct: 130 YLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDKSRGDKT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIA+VDGETQFEVL+TNGDTFLGGEDFD+ +IN+L+ +FK ++G
Sbjct: 190 IAVYDLGGGTFDISIIEIADVDGETQFEVLATNGDTFLGGEDFDLALINYLVDQFKSDSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGD+LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKHLNVK+TR+KLESLV
Sbjct: 250 IDLSGDNLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADNTGPKHLNVKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
E+L+ +SL+PC++AL DA + S+I E+ILVGGQTRMP+VQK ++FF KE +KD+NPDE
Sbjct: 310 EELVQRSLEPCKMALKDAGLSASEIDEVILVGGQTRMPMVQKKAADFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q GVL G VKDVLLLDVTPLTLGIET+GGVMTPLIEKNTTIPT+KTQ FSTA
Sbjct: 370 AVAVGAAIQGGVLGGDVKDVLLLDVTPLTLGIETLGGVMTPLIEKNTTIPTKKTQTFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQT+VTIH +QGERK+ SQNKSLG+FDL DI PAPRGVPQIEV+FDLDANGILNV+AK
Sbjct: 430 DDNQTAVTIHAVQGERKQVSQNKSLGRFDLADIPPAPRGVPQIEVAFDLDANGILNVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+S GLSE E+E M++DAE ++E DKKFEELV+ +N+AD I +K
Sbjct: 490 DKATGKEQSIVIKASSGLSEEEVEQMVRDAEAHAEEDKKFEELVQLRNQADGMIHATRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L++ K TD+EK++IE +IS LE +KGDD++ I+K + L + S + +K
Sbjct: 550 LEEAGDKATDDEKQAIETAISELEEAVKGDDVDNIQKKLDALTEASGQLAQK 601
|
Source: Halomonas titanicae BH1 Species: Halomonas titanicae Genus: Halomonas Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|359394219|ref|ZP_09187272.1| Chaperone protein dnaK [Halomonas boliviensis LC1] gi|357971466|gb|EHJ93911.1| Chaperone protein dnaK [Halomonas boliviensis LC1] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/592 (70%), Positives = 511/592 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ +VIEN+EGGRTTPS++ YT+D +VG AKRQA+TNP NTLYAI
Sbjct: 10 GTTNSCVAVLDGDSAKVIENAEGGRTTPSIIAYTDDGETLVGQAAKRQAVTNPENTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D++VQKDIKMVPYKI ADNGDAWVEVK + APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRRFKDDVVQKDIKMVPYKITEADNGDAWVEVKGKKMAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFNDSQRQATKDAG+IAGL+V RIINEPTAAALAYG+DK D+
Sbjct: 130 YLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDKSRGDKT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEIA+VDGETQFEVL+TNGDTFLGGEDFD+ +IN+L+ +FK ++G
Sbjct: 190 IAVYDLGGGTFDISIIEIADVDGETQFEVLATNGDTFLGGEDFDLALINYLVDQFKSDSG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLSGD+LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKHLNVK+TR+KLESLV
Sbjct: 250 IDLSGDNLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADNTGPKHLNVKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
E+L+ +SL+PC++AL DA + S+I E+ILVGGQTRMP+VQK ++FF KE +KD+NPDE
Sbjct: 310 EELVQRSLEPCKMALKDAGLSASEIDEVILVGGQTRMPMVQKKAADFFGKEARKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVAVGA++Q GVL G VKDVLLLDVTPLTLGIET+GGVMTPLI+KNTTIPT+KTQ FSTA
Sbjct: 370 AVAVGAAIQGGVLGGDVKDVLLLDVTPLTLGIETLGGVMTPLIDKNTTIPTKKTQTFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQT+VTIH +QGERK+ SQNKSLG+FDL DI PAPRGVPQIEV+FDLDANGILNV+AK
Sbjct: 430 DDNQTAVTIHAVQGERKQVSQNKSLGRFDLADIPPAPRGVPQIEVAFDLDANGILNVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI+IK+S GLSE E+E M++DAE ++E DKKFEELV+ +N+AD I +K
Sbjct: 490 DKATGKEQSIVIKASSGLSEEEVEQMVRDAEAHAEEDKKFEELVQLRNQADGMIHATRKT 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+++ K TD+EK++IE +IS LE +KGDD++ I+K + L + S + +K
Sbjct: 550 VEEAGDKATDDEKQAIETAISELEEAVKGDDVDNIQKKLDALTEASGQLAQK 601
|
Source: Halomonas boliviensis LC1 Species: Halomonas boliviensis Genus: Halomonas Family: Halomonadaceae Order: Oceanospirillales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1242 | ||||||
| TIGR_CMR|CBU_1290 | 656 | CBU_1290 "chaperone protein dn | 0.476 | 0.902 | 0.621 | 7.8e-197 | |
| UNIPROTKB|P0A6Y8 | 638 | dnaK [Escherichia coli K-12 (t | 0.475 | 0.926 | 0.610 | 2.4e-195 | |
| UNIPROTKB|A1A766 | 638 | dnaK "Chaperone protein DnaK" | 0.475 | 0.926 | 0.610 | 2.4e-195 | |
| UNIPROTKB|O34241 | 635 | dnaK "Chaperone protein DnaK" | 0.430 | 0.842 | 0.682 | 4e-193 | |
| TIGR_CMR|VC_0855 | 635 | VC_0855 "dnaK protein" [Vibrio | 0.430 | 0.842 | 0.682 | 4e-193 | |
| TIGR_CMR|SO_1126 | 639 | SO_1126 "chaperone protein Dna | 0.475 | 0.923 | 0.617 | 3.2e-191 | |
| TIGR_CMR|CPS_3821 | 638 | CPS_3821 "chaperone protein Dn | 0.475 | 0.926 | 0.597 | 1.4e-190 | |
| TIGR_CMR|CPS_1313 | 633 | CPS_1313 "chaperone protein Dn | 0.482 | 0.946 | 0.581 | 2e-182 | |
| TIGR_CMR|SPO_0043 | 637 | SPO_0043 "chaperone protein Dn | 0.471 | 0.918 | 0.576 | 6.9e-173 | |
| TIGR_CMR|GSU_0033 | 636 | GSU_0033 "chaperone protein dn | 0.470 | 0.918 | 0.577 | 8.9e-173 |
| TIGR_CMR|CBU_1290 CBU_1290 "chaperone protein dnak" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 7.8e-197, P = 7.8e-197
Identities = 371/597 (62%), Positives = 460/597 (77%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ GK +VIEN+EG RTTPS+V YT+D ++VG AKRQA+TN + TLYAI
Sbjct: 10 GTTNSCVAVMEGGKVRVIENAEGSRTTPSIVAYTKDGEVLVGASAKRQAVTNADRTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKD-----QYCAPPQISAEILKKMK 765
KRLIGR++ D +VQKDIKMVPYKI+ ADNGDAWVEVKD Q APPQISA++L KMK
Sbjct: 70 KRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQISAQVLIKMK 129
Query: 766 STAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 825
TAE +L +++ AVITVPAYFNDSQRQATKDAGKIAGL V RIINEPTAAALAYG+DKK
Sbjct: 130 KTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGMDKK 189
Query: 826 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 885
DR I VYDLGGGTFDIS+IEIA VDGE QFEVL+TNGDTFLGGEDFD+R+I++L EF
Sbjct: 190 KGDRKIAVYDLGGGTFDISIIEIAEVDGEHQFEVLATNGDTFLGGEDFDLRLIDYLAGEF 249
Query: 886 KIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSK 945
K + GVDL D LA+QRLKEAAEKAKIELS+++QTD+NLPYITAD +GPKHLN+++TR+K
Sbjct: 250 KKDEGVDLHNDPLALQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPKHLNIRLTRAK 309
Query: 946 LESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD 1005
LESLVEDL+ ++++PC+VA+ DA + S+I ++ILVGGQTRMP VQ+ V FF KE +KD
Sbjct: 310 LESLVEDLVERTIEPCKVAIKDAGLKVSEIDDVILVGGQTRMPKVQEAVKNFFGKEARKD 369
Query: 1006 INPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQ 1065
+NPDE GIET+GGVMT LIEKNTTIPT+ Q
Sbjct: 370 VNPDEAVAIGAAIQGAVLSGEVKDVLLLDVTPLSLGIETLGGVMTKLIEKNTTIPTKANQ 429
Query: 1066 VFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGIL 1125
VFSTA+DNQT+VT+H LQGER+ AS NKSLG+FDL+DI PAPRGVPQIEV+FD+DANGIL
Sbjct: 430 VFSTADDNQTAVTVHVLQGEREMASANKSLGRFDLSDIPPAPRGVPQIEVTFDIDANGIL 489
Query: 1126 NVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTIS 1185
+V+AKDK TGKEQSI+IK+S GLS+ E+E M+KDAE + + D+KF ELV +N+AD+ I
Sbjct: 490 HVSAKDKATGKEQSIVIKASSGLSDEEVEKMVKDAEAHRDSDRKFHELVDARNQADAMIH 549
Query: 1186 IVKKNLKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENIIKK 1242
+K++KD ++++ KG+D + I+ + L + S + ++
Sbjct: 550 AAEKSVKDLGSEVSADEKSAIEKAVNELKEAMKGNDKDAIEAKTKALTEHSSKLAER 606
|
|
| UNIPROTKB|P0A6Y8 dnaK [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 361/591 (61%), Positives = 458/591 (77%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
GIETMGGVMT LI KNTTIPT+ +QVFSTA
Sbjct: 370 AVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AK
Sbjct: 430 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K
Sbjct: 490 DKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 549
Query: 1191 LKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENIIK 1241
+++ K+ KG+D I+ ++L ++S+ +++
Sbjct: 550 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 600
|
|
| UNIPROTKB|A1A766 dnaK "Chaperone protein DnaK" [Escherichia coli APEC O1 (taxid:405955)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 361/591 (61%), Positives = 458/591 (77%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
GIETMGGVMT LI KNTTIPT+ +QVFSTA
Sbjct: 370 AVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AK
Sbjct: 430 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K
Sbjct: 490 DKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 549
Query: 1191 LKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENIIK 1241
+++ K+ KG+D I+ ++L ++S+ +++
Sbjct: 550 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 600
|
|
| UNIPROTKB|O34241 dnaK "Chaperone protein DnaK" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1871 (663.7 bits), Expect = 4.0e-193, P = 4.0e-193
Identities = 366/536 (68%), Positives = 434/536 (80%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAVL+ KP+VIEN+EG RTTPSV+ YT D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYT-DGETLVGQPAKRQAVTNP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ +K++PYKIV ADNGDAWVE K +K+A PQ+SAE+LKK
Sbjct: 62 QNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVLKK 121
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE FL E + AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 122 MKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 181
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ DR I VYDLGGGTFDIS+IEI V+GE FEVLSTNGDT LGGEDFD R+IN+L+
Sbjct: 182 KQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVD 241
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 242 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 301
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLE+LVEDL+ +SL+P +VAL DA + + I+++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 302 AKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPR 361
Query: 364 KDINPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRK 423
KD+NPDE GIETMGGVMT LIEKNTTIPT+
Sbjct: 362 KDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKA 421
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
QVFSTAEDNQ++VTIH LQGERK+A NKSLG+F+L I+PAPRG+PQIEV FDLDA+G
Sbjct: 422 NQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLDADG 481
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
IL+V+AKDK+TGKEQ I I++SGGLS+ EIE M+++AE N E DKKFEEL +N+
Sbjct: 482 ILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATARNQ 537
|
|
| TIGR_CMR|VC_0855 VC_0855 "dnaK protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1871 (663.7 bits), Expect = 4.0e-193, P = 4.0e-193
Identities = 366/536 (68%), Positives = 434/536 (80%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAVL+ KP+VIEN+EG RTTPSV+ YT D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYT-DGETLVGQPAKRQAVTNP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ +K++PYKIV ADNGDAWVE K +K+A PQ+SAE+LKK
Sbjct: 62 QNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVLKK 121
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE FL E + AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 122 MKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 181
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ DR I VYDLGGGTFDIS+IEI V+GE FEVLSTNGDT LGGEDFD R+IN+L+
Sbjct: 182 KQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVD 241
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 242 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 301
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLE+LVEDL+ +SL+P +VAL DA + + I+++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 302 AKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKEPR 361
Query: 364 KDINPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRK 423
KD+NPDE GIETMGGVMT LIEKNTTIPT+
Sbjct: 362 KDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPTKA 421
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
QVFSTAEDNQ++VTIH LQGERK+A NKSLG+F+L I+PAPRG+PQIEV FDLDA+G
Sbjct: 422 NQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLDADG 481
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
IL+V+AKDK+TGKEQ I I++SGGLS+ EIE M+++AE N E DKKFEEL +N+
Sbjct: 482 ILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATARNQ 537
|
|
| TIGR_CMR|SO_1126 SO_1126 "chaperone protein DnaK" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1853 (657.3 bits), Expect = 3.2e-191, P = 3.2e-191
Identities = 365/591 (61%), Positives = 450/591 (76%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ GK +V+EN+EG RTTPS++ YT+D I VG PAKRQA+TNPNNT +AI
Sbjct: 10 GTTNSCVAVLDGGKARVLENAEGDRTTPSIIAYTDDETI-VGQPAKRQAVTNPNNTFFAI 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D+ VQ+D+ ++P+KI+AADNGDAWVE + APPQ+SAEILKKMK TAE
Sbjct: 69 KRLIGRRFKDDEVQRDVNIMPFKIIAADNGDAWVESRGNKMAPPQVSAEILKKMKKTAED 128
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FL E++ +AVITVPAYFNDSQRQATKDAG+IAGLEV RIINEPTAAALAYG+DKK D I
Sbjct: 129 FLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGIDKKQGDNI 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+ VYDLGGGTFDIS+IEI + DG+ FEVL+TNGDT LGGEDFD R+IN+L EFK E G
Sbjct: 189 VAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQG 248
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+ QT++NLPYITAD GPKHL VKITR+KLESLV
Sbjct: 249 LDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNLPYITADATGPKHLVVKITRAKLESLV 308
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDLI ++L+P +VAL DA + S I+E+ILVGGQTRMP VQ+ V+ FF KE +KD+NPDE
Sbjct: 309 EDLIIRTLEPLKVALADADLSVSDINEVILVGGQTRMPKVQEAVTNFFGKEPRKDVNPDE 368
Query: 1011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
GIETMG VMT LIEKNTTIPT+ QVFSTA
Sbjct: 369 AVAVGAAIQAGVLSGDVKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIPTKAQQVFSTA 428
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ++VTIH LQGERK+AS NKSLG+F+L+ I PAPRG+PQIEV FD+DA+GIL+V+A
Sbjct: 429 DDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRGMPQIEVMFDIDADGILHVSAT 488
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DKKTGK+Q+I IK+S GLSE E+ M++DAE ++E DKKFEELV+ +N+AD + KK
Sbjct: 489 DKKTGKKQNITIKASSGLSEEEVAQMVRDAEAHAEEDKKFEELVQSRNQADGLVHATKKQ 548
Query: 1191 LKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENIIK 1241
+++ + KG+D E I+K + L++ S +++
Sbjct: 549 VEEAGDALPSEDKAKIEAAMSAVETAVKGNDKEAIEKATQALIEASAKLME 599
|
|
| TIGR_CMR|CPS_3821 CPS_3821 "chaperone protein DnaK" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 353/591 (59%), Positives = 449/591 (75%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL+ +VIEN+EG RTTPS++GYT + +VG PAKRQ++TNP NTLYAI
Sbjct: 10 GTTNSCVAVLDGDSVRVIENAEGDRTTPSIIGYTAEGETLVGQPAKRQSVTNPENTLYAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D+ Q+DI ++P+ IV ADNGDAWV+VK + APPQ+SAE+LKKMK TAE
Sbjct: 70 KRLIGRRFEDKETQRDIDIMPFGIVKADNGDAWVQVKGEKIAPPQVSAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
FL E + +AVITVPAYFNDSQRQATKDAG+IAGLEV RIINEPTAAALAYG+DK+ D++
Sbjct: 130 FLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKQEGDKV 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+ VYDLGGGTFDIS+IEI +DGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 VAVYDLGGGTFDISIIEIDEMDGEHTFEVLATNGDTHLGGEDFDNRLINYLVAEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL+ D LAMQRLKEAAEKAK ELS+A+QTD+NLPYITAD +GPKH+N+K+TR+KLESLV
Sbjct: 250 MDLTSDPLAMQRLKEAAEKAKCELSSAQQTDVNLPYITADGSGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
ED++ +L+P + AL DA + SKI ++ILVGGQ+RMPLVQK V++FF KE +KD+NPDE
Sbjct: 310 EDMVKATLEPLKQALKDADLSVSKIDDVILVGGQSRMPLVQKTVTDFFGKEPRKDVNPDE 369
Query: 1011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
GIETMGGVMT +I+KNTTIPT+++Q FSTA
Sbjct: 370 AVASGAAIQAGVLSGDVTDVLLLDVTPLSLGIETMGGVMTKVIDKNTTIPTKQSQTFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
+DNQ +VT+H QGERK+AS NKSLG+F+L I PA RG PQIEV+FD+DA+GIL+VTAK
Sbjct: 430 DDNQAAVTVHVCQGERKQASANKSLGQFNLEGIEPAQRGTPQIEVTFDIDADGILHVTAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQ I IK+S GLS+ E+E M++DAE N++ D KFEELV +N+AD I +K
Sbjct: 490 DKNTGKEQKITIKASSGLSDEEVEQMVRDAEANADADAKFEELVTARNQADGMIHATRKQ 549
Query: 1191 LKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENIIK 1241
+++ ++ KGDD E+I+ + L++ S +++
Sbjct: 550 VEEAGEELPSEDKEKIEAALTELEEAVKGDDKEVIEAKTQALMEASAKLME 600
|
|
| TIGR_CMR|CPS_1313 CPS_1313 "chaperone protein DnaK" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1770 (628.1 bits), Expect = 2.0e-182, P = 2.0e-182
Identities = 351/604 (58%), Positives = 446/604 (73%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G ++IEN+EG RTTPS+V Y +N + G PAKRQ++TN
Sbjct: 3 KIIGIDLGTTNSCVAVMEGGIAKIIENAEGSRTTPSIVAYA-NNETLAGQPAKRQSVTNS 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGRK+ D+ VQ +K+ PYKIV ADNGDAWVEV K L+P ++SA+IL+K
Sbjct: 62 TNTLFAIKRLIGRKFDDKEVQKDIKLAPYKIVKADNGDAWVEVDGKALSPQEVSAQILRK 121
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L E + AVITVPAYFNDSQRQATKDAGKIAGL V RIINEPTAAALAYG+D
Sbjct: 122 LKKDAEAYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGVD 181
Query: 184 KKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242
K + D+ +VVYDLGGGTFD+S+IEI+NVDGE QFEVL+TNGDTFLGGEDFD+R+IN+L
Sbjct: 182 KNSNADQKVVVYDLGGGTFDLSIIEISNVDGEKQFEVLATNGDTFLGGEDFDLRLINYLA 241
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT 302
EFK E+G+D+ D+LA+QR+KEAAEKAKIELS+A QT++NLPY+TAD +GPKHLNVK+T
Sbjct: 242 DEFKKESGIDIHQDTLALQRIKEAAEKAKIELSSALQTEVNLPYVTADASGPKHLNVKVT 301
Query: 303 RSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEV 362
R+KLESLV+DL+ ++ PCE AL DA + K+ +SE+ILVGGQTRMP VQ+ V FF KE
Sbjct: 302 RAKLESLVDDLVKSTIAPCEQALKDAGLSKADVSEVILVGGQTRMPKVQEAVKTFFSKEP 361
Query: 363 KKDINPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTR 422
+KD+NPDE GIET+GGVMT LIEKNTTIPTR
Sbjct: 362 RKDVNPDEAVAMGAAIQAGVMSGAVDDVLLLDVAPLSLGIETLGGVMTKLIEKNTTIPTR 421
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
++ FSTAEDNQ +VT+H LQG+R+ A+ NKSLG+F+L DI+P PRG Q+EV+FD+D N
Sbjct: 422 ASETFSTAEDNQAAVTVHVLQGQREMATDNKSLGQFNLTDINPGPRGSVQVEVTFDIDVN 481
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQII 542
GILNV+AKDK TGKEQSI I +S GL+E EI M+K+AEL++ DK+ ELV +N+
Sbjct: 482 GILNVSAKDKATGKEQSIKITASSGLTEDEINRMVKEAELHASEDKQKRELVDQRNQADQ 541
Query: 543 ILEEKFCSFV-LETKKETDYDEDKIRKLKXXXXXXXXXXXXXXTDSM-EMFAKNFDSNQT 600
++ S L ++T+ + I +LK ++ E ++K + Q
Sbjct: 542 LIHTVQTSMTSLAQDQQTEL-KTLIEQLKMAVNGSDKAAIEMRQSALQEAYSKTMQTEQA 600
Query: 601 KESE 604
+ +
Sbjct: 601 QSQQ 604
|
|
| TIGR_CMR|SPO_0043 SPO_0043 "chaperone protein DnaK" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
Identities = 345/598 (57%), Positives = 433/598 (72%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ +P+VIENSEG RTTPS+V +T++ R+ VG PAKRQA+TNP+NT++ +
Sbjct: 10 GTTNSCVAIMDGAQPKVIENSEGARTTPSIVAFTDEERL-VGQPAKRQAVTNPSNTIFGV 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR+ D V KD KMVP+ IV NGDAWVE K + +P QISA IL KMK TAE+
Sbjct: 69 KRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAWVEAKGEKYSPSQISAVILGKMKETAES 128
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E++ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK + +
Sbjct: 129 YLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-NSQT 187
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFD++++EI DG FEV STNGDTFLGGEDFDMRI+N+L EFK E+G
Sbjct: 188 IAVYDLGGGTFDVTILEID--DG--LFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHG 243
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG-PKHLNVKITRSKLESL 949
VDLSGD +A+QRLKEAAEKAKIELS+ QT+IN P+I+ NG P HL +K+TR+KLESL
Sbjct: 244 VDLSGDKMALQRLKEAAEKAKIELSSTTQTEINQPFISMGANGQPLHLVMKLTRAKLESL 303
Query: 950 VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPD 1009
V DLI KS+ PC+ AL DA I S + E++LVGG TRMP V + V++FF KE K +NPD
Sbjct: 304 VGDLIKKSMDPCKAALKDAGISPSDVDEVVLVGGMTRMPKVFEEVTKFFGKEPHKGVNPD 363
Query: 1010 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFST 1069
E GIET+GGV T LI++NTTIPT+K+QVFST
Sbjct: 364 EVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 1070 AEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTA 1129
AEDNQ +VTI QGER+ A+ NK LG+F+L DI PAPRG+PQIEV+FD+DANGI++V+A
Sbjct: 424 AEDNQNAVTIRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDIDANGIVSVSA 483
Query: 1130 KDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKK 1189
KDK TGKE I I++SGGLS+ +IE M+KDAE N+E DK +ELV+ +N+A+S I +K
Sbjct: 484 KDKGTGKEHKITIQASGGLSDEDIEKMVKDAEENAEADKARKELVEARNQAESLIHSTEK 543
Query: 1190 NLKDENTKITDXXXXXXXXXXXXXXXXXKGDDI--ELIKKG----NEDLLKISENIIK 1241
++++ K+ D + E IK G E +K+ E I K
Sbjct: 544 SVEEHGDKVDPTTVEAIELAIAALKDDLDKDGVSAEKIKSGLQNVTEAAMKLGEAIYK 601
|
|
| TIGR_CMR|GSU_0033 GSU_0033 "chaperone protein dnaK" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 340/589 (57%), Positives = 419/589 (71%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P VI N+EG RTTPS+V + E +VG AKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAVMEGGEPVVIANAEGSRTTPSMVAFAESGERLVGQQAKRQAVTNPENTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGRKY E V+KDI + P+KIV ADNGDAWVE + + + P+ISA +L+KMK TAE
Sbjct: 70 KRLIGRKYDTEEVRKDISISPFKIVKADNGDAWVEARGKMYSAPEISAMVLQKMKQTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + AVITVPAYFNDSQRQATKDAGKIAGL VLRIINEPTAAALAYGLDKK D++I
Sbjct: 130 YLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAYGLDKKKDEKI 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
V+DLGGGTFDIS++E+ G+ FEV STNGDTFLGGEDFD R+I+ + EFK + G
Sbjct: 190 -AVFDLGGGTFDISILEL----GDGVFEVKSTNGDTFLGGEDFDQRVIDWIADEFKKDQG 244
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL GD +A+QRLKEAAEKAK ELS + +TDINLP+ITAD GPKHL +K++R+KLE+L
Sbjct: 245 IDLRGDKMALQRLKEAAEKAKCELSTSMETDINLPFITADATGPKHLTMKLSRAKLEALC 304
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DL++K PC AL DA + S++ E+ILVGG TRMP VQK V E F K K +NPDE
Sbjct: 305 ADLLNKLEGPCRTALKDAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGKVPNKGVNPDE 364
Query: 1011 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
GIET+G VMT LIEKNTTIP RK+QVFSTA
Sbjct: 365 VVAIGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIEKNTTIPCRKSQVFSTA 424
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQ +VTIH LQGER+ A NK+LG F+L I PAPRGVPQIEV+FD+DANGI++V+AK
Sbjct: 425 SDNQPAVTIHVLQGEREMAIDNKTLGNFELTGIPPAPRGVPQIEVTFDIDANGIVHVSAK 484
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
D TGKEQSI I +S GLS+ EI+ M+K+AE +S DKK ELV+ +N AD+ +K+
Sbjct: 485 DLGTGKEQSIRITASSGLSKEEIDKMVKEAEAHSAEDKKKRELVEARNHADTLSYSTEKS 544
Query: 1191 LKDENTKITDXXXXXXXXXXXXXXXXXKGDDIELIKKGNEDLLKISENI 1239
LK+ KI +G D+E++KK ++L + S +
Sbjct: 545 LKEYGDKIGADEKAKIEECLANLRKAMEGSDVEVLKKATDELTQASHKL 593
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O87712 | DNAK_COXBU | No assigned EC number | 0.6700 | 0.4766 | 0.9024 | yes | N/A |
| Q5ZTY3 | DNAK_LEGPH | No assigned EC number | 0.7008 | 0.4677 | 0.9021 | yes | N/A |
| Q0VST6 | DNAK_ALCBS | No assigned EC number | 0.7100 | 0.4613 | 0.8939 | yes | N/A |
| C5BQ33 | DNAK_TERTT | No assigned EC number | 0.7010 | 0.4766 | 0.9192 | yes | N/A |
| Q02FR1 | DNAK_PSEAB | No assigned EC number | 0.7110 | 0.4597 | 0.8963 | yes | N/A |
| Q607A5 | DNAK_METCA | No assigned EC number | 0.6722 | 0.4766 | 0.9235 | yes | N/A |
| B5BLH8 | DNAK_SALPK | No assigned EC number | 0.6598 | 0.4758 | 0.9263 | yes | N/A |
| A6W2D2 | DNAK_MARMS | No assigned EC number | 0.7128 | 0.4766 | 0.9293 | yes | N/A |
| Q88DU2 | DNAK_PSEPK | No assigned EC number | 0.6875 | 0.4766 | 0.9235 | yes | N/A |
| Q3KIA0 | DNAK_PSEPF | No assigned EC number | 0.6891 | 0.4766 | 0.9278 | yes | N/A |
| Q1IF59 | DNAK_PSEE4 | No assigned EC number | 0.6841 | 0.4766 | 0.9235 | yes | N/A |
| A4VPQ5 | DNAK_PSEU5 | No assigned EC number | 0.7092 | 0.4597 | 0.8963 | yes | N/A |
| B6IZJ0 | DNAK_COXB2 | No assigned EC number | 0.6700 | 0.4766 | 0.9024 | yes | N/A |
| A8G9K8 | DNAK_SERP5 | No assigned EC number | 0.6700 | 0.4758 | 0.9277 | yes | N/A |
| Q05FS8 | DNAK_CARRP | No assigned EC number | 0.9020 | 0.4766 | 0.9833 | yes | N/A |
| A6VCL8 | DNAK_PSEA7 | No assigned EC number | 0.7110 | 0.4597 | 0.8963 | yes | N/A |
| A9N8H2 | DNAK_COXBR | No assigned EC number | 0.6700 | 0.4766 | 0.9024 | yes | N/A |
| B5F6Y8 | DNAK_SALA4 | No assigned EC number | 0.6598 | 0.4758 | 0.9263 | yes | N/A |
| Q87WP0 | DNAK_PSESM | No assigned EC number | 0.6925 | 0.4766 | 0.9278 | yes | N/A |
| B4TIB4 | DNAK_SALHS | No assigned EC number | 0.6598 | 0.4758 | 0.9263 | yes | N/A |
| A6VNB1 | DNAK_ACTSZ | No assigned EC number | 0.6711 | 0.4685 | 0.9165 | yes | N/A |
| Q21H36 | DNAK_SACD2 | No assigned EC number | 0.6841 | 0.4766 | 0.9206 | yes | N/A |
| B6J7U7 | DNAK_COXB1 | No assigned EC number | 0.6700 | 0.4766 | 0.9024 | yes | N/A |
| B4TVZ5 | DNAK_SALSV | No assigned EC number | 0.6598 | 0.4758 | 0.9263 | yes | N/A |
| Q2SMM8 | DNAK_HAHCH | No assigned EC number | 0.6993 | 0.4758 | 0.9205 | yes | N/A |
| B3PF33 | DNAK_CELJU | No assigned EC number | 0.6875 | 0.4766 | 0.925 | yes | N/A |
| A4XYF6 | DNAK_PSEMY | No assigned EC number | 0.7092 | 0.4597 | 0.8963 | yes | N/A |
| A1U614 | DNAK_MARAV | No assigned EC number | 0.7060 | 0.4766 | 0.9235 | yes | N/A |
| Q5PDJ5 | DNAK_SALPA | No assigned EC number | 0.6598 | 0.4758 | 0.9263 | yes | N/A |
| Q4KIH1 | DNAK_PSEF5 | No assigned EC number | 0.6925 | 0.4766 | 0.9278 | yes | N/A |
| Q5WV15 | DNAK_LEGPL | No assigned EC number | 0.7008 | 0.4677 | 0.9021 | yes | N/A |
| O32482 | DNAK_LEGPN | No assigned EC number | 0.7008 | 0.4677 | 0.9021 | yes | N/A |
| Q4ZNP7 | DNAK_PSEU2 | No assigned EC number | 0.6976 | 0.4766 | 0.9278 | yes | N/A |
| B7V1H3 | DNAK_PSEA8 | No assigned EC number | 0.7110 | 0.4597 | 0.8963 | yes | N/A |
| Q48E62 | DNAK_PSE14 | No assigned EC number | 0.6976 | 0.4766 | 0.9278 | yes | N/A |
| B1J254 | DNAK_PSEPW | No assigned EC number | 0.6908 | 0.4766 | 0.9221 | yes | N/A |
| A5W9A3 | DNAK_PSEP1 | No assigned EC number | 0.6875 | 0.4766 | 0.9689 | yes | N/A |
| Q9HV43 | DNAK_PSEAE | No assigned EC number | 0.7110 | 0.4597 | 0.8963 | yes | N/A |
| B8GNX1 | DNAK_THISH | No assigned EC number | 0.6672 | 0.4661 | 0.9032 | yes | N/A |
| Q5X3M7 | DNAK_LEGPA | No assigned EC number | 0.7008 | 0.4677 | 0.9021 | yes | N/A |
| Q326K7 | DNAK_SHIBS | No assigned EC number | 0.6598 | 0.4694 | 0.9137 | yes | N/A |
| Q32KA5 | DNAK_SHIDS | No assigned EC number | 0.6598 | 0.4694 | 0.9137 | yes | N/A |
| A5IDK8 | DNAK_LEGPC | No assigned EC number | 0.7008 | 0.4677 | 0.9021 | yes | N/A |
| Q1QSX0 | DNAK_CHRSD | No assigned EC number | 0.7111 | 0.4766 | 0.9192 | yes | N/A |
| Q3Z601 | DNAK_SHISS | No assigned EC number | 0.6598 | 0.4694 | 0.9137 | yes | N/A |
| B0KIS5 | DNAK_PSEPG | No assigned EC number | 0.6841 | 0.4766 | 0.9235 | yes | N/A |
| A9KG88 | DNAK_COXBN | No assigned EC number | 0.6700 | 0.4766 | 0.9024 | yes | N/A |
| Q65U55 | DNAK_MANSM | No assigned EC number | 0.6694 | 0.4685 | 0.9150 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1242 | |||
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-160 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-157 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-155 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-151 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-149 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-146 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-145 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-141 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-127 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-123 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-119 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-113 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-104 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-102 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-99 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-96 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 1e-90 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 4e-85 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-79 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 5e-78 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 3e-77 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 6e-74 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 6e-71 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-69 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-65 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 1e-64 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-61 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-61 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 2e-60 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-59 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-59 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 9e-55 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 1e-31 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 1e-28 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 2e-21 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 7e-18 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 4e-15 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 1e-12 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 4e-11 | |
| pfam01025 | 165 | pfam01025, GrpE, GrpE | 8e-11 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 4e-10 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-09 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 1e-09 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 2e-09 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 2e-09 | |
| cd00446 | 137 | cd00446, GrpE, GrpE is the adenine nucleotide exch | 3e-09 | |
| COG0576 | 193 | COG0576, GrpE, Molecular chaperone GrpE (heat shoc | 8e-09 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 1e-08 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 2e-08 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-08 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-08 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-08 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 5e-08 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-07 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 1e-07 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 1e-07 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 2e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 3e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 3e-07 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 4e-07 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 4e-07 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 6e-07 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 2e-06 | |
| PRK13927 | 334 | PRK13927, PRK13927, rod shape-determining protein | 2e-05 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 3e-05 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 3e-05 | |
| PRK14150 | 193 | PRK14150, PRK14150, heat shock protein GrpE; Provi | 2e-04 | |
| PRK14145 | 196 | PRK14145, PRK14145, heat shock protein GrpE; Provi | 2e-04 | |
| PRK14144 | 199 | PRK14144, PRK14144, heat shock protein GrpE; Provi | 5e-04 | |
| PRK14153 | 194 | PRK14153, PRK14153, heat shock protein GrpE; Provi | 0.001 | |
| PRK13927 | 334 | PRK13927, PRK13927, rod shape-determining protein | 0.002 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 0.004 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 0.004 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1055 bits (2730), Expect = 0.0
Identities = 388/592 (65%), Positives = 481/592 (81%), Gaps = 7/592 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P+VIEN+EG RTTPSVV +T+D +VG PAKRQA+TNP NT+++I
Sbjct: 10 GTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+GR+ DE VQKDIK+VPYKIV ADNGDAWVE+ + P +ISA IL+K+K AE
Sbjct: 70 KRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAED 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK D
Sbjct: 128 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-GDEK 186
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+VYDLGGGTFD+S++EI G+ FEVLSTNGDT LGG+DFD RII++L EFK ENG
Sbjct: 187 ILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENG 242
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D +A+QRLKEAAEKAKIELS+A+QT+INLP+ITAD +GPKHL +K+TR+K E L
Sbjct: 243 IDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELT 302
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC+ AL DA + S I E+ILVGG TRMP VQ++V EFF KE K +NPDE
Sbjct: 303 EDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDE 362
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GVL+G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K+QVFSTA
Sbjct: 363 VVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA 422
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQ +VTIH LQGER+ A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANGI++V+AK
Sbjct: 423 ADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAK 482
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI I +S GLS+ EIE M+KDAE N+E DKK +ELV+ +N+ADS I +K
Sbjct: 483 DKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKT 542
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LK+ K+ +EKE IE +I L+ +KG+D E IK E+L + S+ + +
Sbjct: 543 LKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEA 594
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1021 bits (2644), Expect = 0.0
Identities = 370/536 (69%), Positives = 450/536 (83%), Gaps = 7/536 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P+VIEN+EG RTTPSVV +T+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+++IKRL+GR+ DE VQ +K+VPYKIV ADNGDAWVE+ KK P +ISA IL+K
Sbjct: 63 ENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLD
Sbjct: 121 LKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 180
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
KK D I+VYDLGGGTFD+S++EI G+ FEVLSTNGDT LGG+DFD RII++L
Sbjct: 181 KK-GDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDYLAD 235
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK ENG+DL D +A+QRLKEAAEKAKIELS+A+QT+INLP+ITAD +GPKHL +K+TR
Sbjct: 236 EFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTR 295
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L EDL+ ++++PC+ AL DA + S I E+ILVGG TRMP VQ++V EFF KE
Sbjct: 296 AKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPN 355
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GVL+G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K
Sbjct: 356 KGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 415
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTA DNQ +VTIH LQGER+ A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANG
Sbjct: 416 SQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANG 475
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
I++V+AKDK TGKEQSI I +S GLS+ EIE M+KDAE N+E DKK +ELV+ +N+
Sbjct: 476 IVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ 531
|
Length = 627 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 882 bits (2281), Expect = 0.0
Identities = 362/592 (61%), Positives = 456/592 (77%), Gaps = 7/592 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P VI N+EG RTTPSVV +T++ +VG PAKRQA+TNP NT+Y+I
Sbjct: 8 GTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +GR++ + V ++ K VPYK+V D GD V+V + P +ISA IL+K+K AE
Sbjct: 68 KRFMGRRF--DEVTEEAKRVPYKVVG-DGGDVRVKVDGKEYTPQEISAMILQKLKKDAEA 124
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK D
Sbjct: 125 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEK 184
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+V+DLGGGTFD+S++EI G+ FEVLST GDT LGG+DFD RII+ L EFK E G
Sbjct: 185 ILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRLKEAAEKAKIELS+ T+INLP+ITAD +GPKHL + +TR+K E L
Sbjct: 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELT 300
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DL+ ++ +P AL DA + S I E+ILVGG TR+P VQ++V +FF KE K +NPDE
Sbjct: 301 ADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDE 360
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GVL G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K+QVFSTA
Sbjct: 361 VVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA 420
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQ +V IH LQGER A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 421 ADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAK 480
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI I +S GLSE EIE M+K+AE N+E DKK +E ++ +N ADS +K
Sbjct: 481 DKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKT 540
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LK+ K+ EEKE IEK+++ L+ +KG+D+E IK E+L + + + +
Sbjct: 541 LKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEA 592
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 858 bits (2218), Expect = 0.0
Identities = 347/536 (64%), Positives = 424/536 (79%), Gaps = 7/536 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P VI N+EG RTTPSVV +T++ +VG PAKRQA+TNP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+Y+IKR +GR++ + V K VPYK+V D GD V+V K+ P +ISA IL+K
Sbjct: 61 ENTIYSIKRFMGRRF--DEVTEEAKRVPYKVVG-DGGDVRVKVDGKEYTPQEISAMILQK 117
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K D I+V+DLGGGTFD+S++EI G+ FEVLST GDT LGG+DFD RII+ L
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK E G+DLS D +A+QRLKEAAEKAKIELS+ T+INLP+ITAD +GPKHL + +TR
Sbjct: 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTR 293
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L DL+ ++ +P AL DA + S I E+ILVGG TR+P VQ++V +FF KE
Sbjct: 294 AKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPN 353
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GVL G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K
Sbjct: 354 KSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 413
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTA DNQ +V IH LQGER A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANG
Sbjct: 414 SQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANG 473
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
IL+V+AKDK TGKEQSI I +S GLSE EIE M+K+AE N+E DKK +E ++ +N
Sbjct: 474 ILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNN 529
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 855 bits (2212), Expect = 0.0
Identities = 359/596 (60%), Positives = 462/596 (77%), Gaps = 11/596 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G P+VI N EG RTTPSVV +T R+ VG AKRQA+TNP NT++++
Sbjct: 7 GTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERL-VGQAAKRQAVTNPKNTVFSV 65
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV--KDQYCAPPQISAEILKKMKSTA 768
KRLIGRK++D +VQ+DIK VPYK+V NGDA VEV + P QISA +L+K+K TA
Sbjct: 66 KRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQKLKETA 125
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L E + AVITVPAYFND+QRQATKDAG+IAGL VLRIINEPTAAALAYGLDKK +
Sbjct: 126 EAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLDKKDKE 185
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
R ++V+DLGGGTFD+S++EI G+ FEVL+TNGDT LGGEDFD R+++H + EFK +
Sbjct: 186 RNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKK 241
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DLS D A+QRL+EAAEKAKIELS + QT+INLP+ITA +G K ++ +TR+K E
Sbjct: 242 YGIDLSKDPRALQRLREAAEKAKIELS-SNQTEINLPFITAMADG-KDVSGTLTRAKFEE 299
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DL ++L+P E AL DAK+ KS+I E++LVGG TR+P VQ++V EFF KE K +NP
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 1009 DEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQV 1066
DEAVA+GA+VQAGVLSG VKDVLLLDVTPL+LGIET+GGVMT LI +NTTIPT+K+Q+
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQI 419
Query: 1067 FSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILN 1126
FSTA DNQT+V I QGER+ A NK LG F+L+ I PAPRGVPQIEV+FD+DANGIL
Sbjct: 420 FSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILT 479
Query: 1127 VTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISI 1186
V+AKDK TGKEQ I I +S GLS+ EIE M+KDAE + DKK +E ++ KNEA+ +
Sbjct: 480 VSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYS 539
Query: 1187 VKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
++K+LK+E K+ + +K+ +E++I L+ ++G+D E I+ E+L K+ + I ++
Sbjct: 540 LEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGER 595
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 830 bits (2146), Expect = 0.0
Identities = 357/618 (57%), Positives = 457/618 (73%), Gaps = 24/618 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGIDLGTTNSCVAV+ G P+VI N EG RTTPSVV +T R+ VG AKRQA+TNP
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERL-VGQAAKRQAVTNPK 59
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV--KDKKLAPPQISAEILK 122
NT++++KRLIGRK++D +VQ +K VPYK+V NGDA VEV + P QISA +L+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
K+K TAE +L E + AVITVPAYFND+QRQATKDAG+IAGL VLRIINEPTAAALAYGL
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 183 DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242
DKK +R ++V+DLGGGTFD+S++EI G+ FEVL+TNGDT LGGEDFD R+++H +
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHFV 235
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT 302
EFK + G+DLS D A+QRL+EAAEKAKIELS + QT+INLP+ITA +G K ++ +T
Sbjct: 236 EEFKKKYGIDLSKDPRALQRLREAAEKAKIELS-SNQTEINLPFITAMADG-KDVSGTLT 293
Query: 303 RSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEV 362
R+K E L DL ++L+P E AL DAK+ KS+I E++LVGG TR+P VQ++V EFF KE
Sbjct: 294 RAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEP 353
Query: 363 KKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIP 420
K +NPDEAVA+GA+VQAGVLSG VKDVLLLDVTPL+LGIET+GGVMT LI +NTTIP
Sbjct: 354 SKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIP 413
Query: 421 TRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 480
T+K+Q+FSTA DNQT+V I QGER+ A NK LG F+L+ I PAPRGVPQIEV+FD+D
Sbjct: 414 TKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDID 473
Query: 481 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQ 540
ANGIL V+AKDK TGKEQ I I +S GLS+ EIE M+KDAE + DKK +E ++ KNE
Sbjct: 474 ANGILTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE- 532
Query: 541 IIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQT 600
EE +V +K + DK+ + + +E I L E+ ++ + +
Sbjct: 533 ---AEE----YVYSLEKSLKEEGDKLPEADKKKVEEAIEWL-----KEELEGEDKEEIEA 580
Query: 601 KESEIIFLIFKLIKKFYK 618
K E+ ++ + ++ Y+
Sbjct: 581 KTEELQKVVQPIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 777 bits (2009), Expect = 0.0
Identities = 354/592 (59%), Positives = 463/592 (78%), Gaps = 5/592 (0%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA++ +P+VIENSEG RTTPSVV +TED + +VG+ AKRQA+TNP NT++A
Sbjct: 49 GTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFAT 108
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR+Y ++ +K+ K++PYKIV A NGDAW+E + + +P QI A +L+KMK TAE+
Sbjct: 109 KRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAES 168
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L K+++AVITVPAYFNDSQRQATKDAGKIAGL+VLRIINEPTAAALA+G+DK D +
Sbjct: 169 YLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-DGKT 227
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++EI FEV +TNG+T LGGEDFD RI+N+LI EFK + G
Sbjct: 228 IAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQG 283
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LA+QRL+EAAE AKIELS+ QT+INLP+ITAD++GPKHL +K++R+KLE L
Sbjct: 284 IDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DL+ K+++PCE + DA + K +++++ILVGG TRMP V + V + F KE K +NPDE
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDE 403
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++QAGVL G +KD+LLLDVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA
Sbjct: 404 AVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTA 463
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQT V I QGER+ A+ NK LG+FDL I PAPRGVPQIEV+FD+DANGI+N++A
Sbjct: 464 ADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAV 523
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+Q I I+SSGGLS+ EIE M+K+AE E D+K +ELV KNEA++ I V+K
Sbjct: 524 DKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQ 583
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L D KI+D +K+ +++ I+ L + +D++ IK + L + S I ++
Sbjct: 584 LSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQ 635
|
Length = 663 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 758 bits (1959), Expect = 0.0
Identities = 357/613 (58%), Positives = 459/613 (74%), Gaps = 18/613 (2%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
I+GIDLGTTNSCVA++ +P+VIENSEG RTTPSVV +TED + +VG+ AKRQA+TNP
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT++A KRLIGR+Y ++ + K++PYKIV A NGDAW+E + KK +P QI A +L+KM
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKM 162
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K TAE++L K+++AVITVPAYFNDSQRQATKDAGKIAGL+VLRIINEPTAAALA+G+DK
Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
D + I VYDLGGGTFDIS++EI FEV +TNG+T LGGEDFD RI+N+LI E
Sbjct: 223 N-DGKTIAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLIAE 277
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
FK + G+DL D LA+QRL+EAAE AKIELS+ QT+INLP+ITAD++GPKHL +K++R+
Sbjct: 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRA 337
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
KLE L DL+ K+++PCE + DA + K +++++ILVGG TRMP V + V + F KE K
Sbjct: 338 KLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSK 397
Query: 365 DINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKT 424
+NPDEAVA+GA++QAGVL G +KD+LLLDVTPL+LGIET+GGV T LI +NTTIPT+K+
Sbjct: 398 GVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKS 457
Query: 425 QVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 484
QVFSTA DNQT V I QGER+ A+ NK LG+FDL I PAPRGVPQIEV+FD+DANGI
Sbjct: 458 QVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517
Query: 485 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN--EQII 542
+N++A DK TGK+Q I I+SSGGLS+ EIE M+K+AE E D+K +ELV KN E +I
Sbjct: 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLI 577
Query: 543 ILEEKFCSFVLETKKETDYD--EDKIRKLKEIVIENIIIELIPITD---------SMEMF 591
EK S + + + D D + KI KL+ + + + T S + +
Sbjct: 578 YSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAY 637
Query: 592 AKNFDSNQTKESE 604
+ NQ E
Sbjct: 638 KQGNSDNQQSEQS 650
|
Length = 663 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 735 bits (1900), Expect = 0.0
Identities = 343/594 (57%), Positives = 443/594 (74%), Gaps = 9/594 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV+ GKP VI N+EG RTTPS+V YT+ ++VG AKRQA+ NP NT Y++
Sbjct: 10 GTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVE--VKDQYCAPPQISAEILKKMKSTA 768
KR IGRK EI + + K V YK+ NG+ +E ++ +P +ISA++L+K+ A
Sbjct: 70 KRFIGRK-FSEISE-EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDA 127
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
+L E + +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA+LAYGLDKK ++
Sbjct: 128 SKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-NN 186
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+V+DLGGGTFD+S++E+ G+ FEVLST+GDT LGG+DFD +I+N LI EFK +
Sbjct: 187 ETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK 242
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DLS D A+QRL EAAEKAKIELSN QT+INLP+ITA + GPKH+ +TR+K E
Sbjct: 243 EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEE 302
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DLI++ P E AL DAK+DKS I E++LVGG TR+P +Q++V + K+ + +NP
Sbjct: 303 LCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNP 362
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DE VA+GA+VQAGVL+G VKD+LLLDVTPL+LG+ET+GGVMT +I +NTTIPT+K++VFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 422
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA DNQT+V IH LQGER+ A NKSLG F L+ I PAPRGVPQIEV+FD+DANGIL+VT
Sbjct: 423 TAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKDK TGKEQSI I+ + L + E+E M+K+AE N+ DK+ E + KN+A+S +
Sbjct: 483 AKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAE 542
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
K LK+ KI++E+KE IE I L ++ D+ E IK E+L K I K+
Sbjct: 543 KQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKE 596
|
Length = 621 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 723 bits (1868), Expect = 0.0
Identities = 343/616 (55%), Positives = 450/616 (73%), Gaps = 22/616 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K++GIDLGTTNS VAV+ GKP VI N+EG RTTPS+V YT+ ++VG AKRQA+ NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVE--VKDKKLAPPQISAEIL 121
NT Y++KR IGRK EI + K V YK+ NG+ +E +K +P +ISA++L
Sbjct: 63 ENTFYSVKRFIGRK-FSEISEE-AKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVL 120
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+ A +L E + +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA+LAYG
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK ++ I+V+DLGGGTFD+S++E+ G+ FEVLST+GDT LGG+DFD +I+N L
Sbjct: 181 LDKK-NNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
I EFK + G+DLS D A+QRL EAAEKAKIELSN QT+INLP+ITA + GPKH+ +
Sbjct: 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTL 295
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L DLI++ P E AL DAK+DKS I E++LVGG TR+P +Q++V + K+
Sbjct: 296 TRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK 355
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+ +NPDE VA+GA+VQAGVL+G VKD+LLLDVTPL+LG+ET+GGVMT +I +NTTIPT
Sbjct: 356 PNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPT 415
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
+K++VFSTA DNQT+V IH LQGER+ A NKSLG F L+ I PAPRGVPQIEV+FD+DA
Sbjct: 416 KKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDA 475
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQI 541
NGIL+VTAKDK TGKEQSI I+ + L + E+E M+K+AE N+ DK+ E + KN+
Sbjct: 476 NGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQA- 534
Query: 542 IILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTK 601
E C + +K+ +DKI + K+ IEN+I +L + N++S ++
Sbjct: 535 ----ESLC---YQAEKQLKELKDKISEEKKEKIENLIKKLRQALQN-----DNYESIKSL 582
Query: 602 ESEIIFLIFKLIKKFY 617
E+ + ++ K+ Y
Sbjct: 583 LEELQKALMEIGKEVY 598
|
Length = 621 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 721 bits (1864), Expect = 0.0
Identities = 296/539 (54%), Positives = 401/539 (74%), Gaps = 13/539 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+I+GIDLGTTNS VAV+ GKP VI N+EG RTTPSVVG+T+D ++VG A+RQ + NP
Sbjct: 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAE 119
NT Y +KR IGR+Y DE+ K VPY I + G+ V +K +++ AP ++SA
Sbjct: 63 QNTFYNLKRFIGRRY-DELDPES-KRVPYTIRRNEQGN--VRIKCPRLEREFAPEELSAM 118
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
IL+K+ A +L E + AVITVPAYFNDSQRQAT+DAG+IAGLEV RI+NEPTAAALA
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 180 YGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239
YGLD+ + ++V+DLGGGTFD+S++E+ N FEV +T+GDT LGG DFD RI++
Sbjct: 179 YGLDRS-SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVD 233
Query: 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 299
L +F + G+DL D A+QRL EAAEKAKIELS TDI+LP+ITA ++GPKH+
Sbjct: 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 359
++ R + ESL DL+ + L+P + AL DA + I E++LVGG TRMP+VQ++V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 360 KEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTI 419
+E +++NPDE VAVGA++QAG+L+G +KD+LLLDVTPL+LG+ET+GGVM LI +NTTI
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTI 413
Query: 420 PTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDL 479
P R++ VFST+E+NQ+SV IH QGER+ AS NKSLG+F L+ I PAPRGVPQ++V+FD+
Sbjct: 414 PVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDI 473
Query: 480 DANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN 538
DANGIL V+A D+ TG+EQS+ I+ + LSE E+ MI++AE ++ D++ E ++ +N
Sbjct: 474 DANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRN 532
|
Length = 668 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 712 bits (1839), Expect = 0.0
Identities = 298/594 (50%), Positives = 423/594 (71%), Gaps = 20/594 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV+ GKP VI N+EG RTTPSVVG+T+D ++VG A+RQ + NP NT Y +
Sbjct: 10 GTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNL 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKS 766
KR IGR+Y + + + K VPY I + G+ V +K ++ AP ++SA IL+K+
Sbjct: 70 KRFIGRRYDE--LDPESKRVPYTIRRNEQGN--VRIKCPRLEREFAPEELSAMILRKLAD 125
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKP 826
A +L E + AVITVPAYFNDSQRQAT+DAG+IAGLEV RI+NEPTAAALAYGLD+
Sbjct: 126 DASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS- 184
Query: 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+ ++V+DLGGGTFD+S++E+ N FEV +T+GDT LGG DFD RI++ L +F
Sbjct: 185 SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
+ G+DL D A+QRL EAAEKAKIELS TDI+LP+ITA ++GPKH+ ++ R +
Sbjct: 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQF 300
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI 1006
ESL DL+ + L+P + AL DA + I E++LVGG TRMP+VQ++V +E +++
Sbjct: 301 ESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNV 360
Query: 1007 NPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQV 1066
NPDE VAVGA++QAG+L+G +KD+LLLDVTPL+LG+ET+GGVM LI +NTTIP R++ V
Sbjct: 361 NPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDV 420
Query: 1067 FSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILN 1126
FST+E+NQ+SV IH QGER+ AS NKSLG+F L+ I PAPRGVPQ++V+FD+DANGIL
Sbjct: 421 FSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480
Query: 1127 VTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISI 1186
V+A D+ TG+EQS+ I+ + LSE E+ MI++AE ++ D++ E ++ +N A + I+
Sbjct: 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQ 540
Query: 1187 VKKNLKDEN----TKITDEEKESIEKSISNLELLIKGDD---IELIKKGNEDLL 1233
++ L+D + ++ ++E ++ +++ ++ DD ++L ++ L
Sbjct: 541 AERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEAL 594
|
Length = 668 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 717 bits (1852), Expect = 0.0
Identities = 319/577 (55%), Positives = 426/577 (73%), Gaps = 7/577 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL GKP VI NSEGGRTTPS+VG+ + +VG AKRQA+TN NT+Y+I
Sbjct: 10 GTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR IGR++ D ++ VPY V + V+++ + P +ISA IL+K+K AE
Sbjct: 70 KRFIGRRWDDTEEER--SRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEA 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYF D+QRQATKDAG IAGLEVLRIINEPTAAALAYGLDK+ +++
Sbjct: 128 YLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQL 187
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+V+DLGGGTFD+S++++ G+ FEV +T G+ LGG+DFD I++ L+ F+ + G
Sbjct: 188 ILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEG 243
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRL+EAAEKAKIELS+ T INLP+ITAD+ GPKHL +++TR+K E L
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPD 1009
+DL+ +++P + AL DA + I +ILVGG TR+P VQ+ + +FF K+ + +NPD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 1010 EAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFST 1069
EAVA+GA++QAGVL G VKD+LLLDVTPL+LGIET+G V T +IE+NTTIPT K+QVFST
Sbjct: 364 EAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFST 423
Query: 1070 AEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTA 1129
A D QTSV IH LQGER A NKSLGKF L I PAPRGVPQIEVSF++D NGIL V+A
Sbjct: 424 ATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSA 483
Query: 1130 KDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKK 1189
+D+ TG+EQSI I ++GGLS EIE M ++AE +E D++ ++L++ KN+ADS + +
Sbjct: 484 QDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYES 543
Query: 1190 NLKDENTKITDEEKESIEKSISNLELLIKGDDIELIK 1226
LK+ I++E K+ E+ + LE + +I L +
Sbjct: 544 TLKENGELISEELKQRAEQKVEQLEAALTDPNISLEE 580
|
Length = 653 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 710 bits (1834), Expect = 0.0
Identities = 312/537 (58%), Positives = 408/537 (75%), Gaps = 7/537 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K+IGIDLGTTNSCVAVL GKP VI NSEGGRTTPS+VG+ + +VG AKRQA+TN
Sbjct: 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+Y+IKR IGR++ D + VPY V + V+++ + P +ISA IL+K
Sbjct: 63 ENTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L E + +AVITVPAYF D+QRQATKDAG IAGLEVLRIINEPTAAALAYGLD
Sbjct: 121 LKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLD 180
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +++I+V+DLGGGTFD+S++++ G+ FEV +T G+ LGG+DFD I++ L+
Sbjct: 181 KQDQEQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDWLVE 236
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F+ + G+DLS D +A+QRL+EAAEKAKIELS+ T INLP+ITAD+ GPKHL +++TR
Sbjct: 237 NFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTR 296
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEV 362
+K E L +DL+ +++P + AL DA + I +ILVGG TR+P VQ+ + +FF K+
Sbjct: 297 AKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQP 356
Query: 363 KKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
+ +NPDEAVA+GA++QAGVL G VKD+LLLDVTPL+LGIET+G V T +IE+NTTIPT
Sbjct: 357 DRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTS 416
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
K+QVFSTA D QTSV IH LQGER A NKSLGKF L I PAPRGVPQIEVSF++D N
Sbjct: 417 KSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVN 476
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
GIL V+A+D+ TG+EQSI I ++GGLS EIE M ++AE +E D++ ++L++ KN+
Sbjct: 477 GILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533
|
Length = 653 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 703 bits (1817), Expect = 0.0
Identities = 339/591 (57%), Positives = 438/591 (74%), Gaps = 33/591 (5%)
Query: 651 GTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYA 709
GTTNS VAV+ G P+VIEN+EG R TPSVV ++++ ++VG AKRQA+ NP NT+++
Sbjct: 13 GTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFS 72
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGD-AWVEVKDQYCAPPQISAEILKKMKSTA 768
IKR IGR NG VEV + P +ISA IL K+K A
Sbjct: 73 IKRKIGRG--------------------SNGLKISVEVDGKKYTPEEISAMILTKLKEDA 112
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L EK+ AVITVPAYFND+QRQATKDA +IAGL VLR+INEPTAAALAYGLDK +
Sbjct: 113 EAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-KE 171
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+ ++VYDLGGGTFD+S++EI G+ FEVL+T GD LGG+DFD +I++L+ EFK +
Sbjct: 172 KTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGK 227
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A+QRL+EAAEKAKIELS+A QT INLP I D L ++TR+K E
Sbjct: 228 GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKELTRAKFEE 283
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L+ DL+ ++++P E AL DA ++KS I +ILVGG TR+P VQ++V EFF KE +K INP
Sbjct: 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINP 343
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DEAVA+GA++QA VLSG V DVLLLDV PL+LGIET+GGV TP+IE+NTTIP +K+Q FS
Sbjct: 344 DEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA D QT+V IH QGER+ A+ NKSLG+F+L+ I PAPRGVPQIEV+FD+DANGILNVT
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKD TGKEQSI IK+S GLS+ EIE M++DAE N+ LDKKF ELV+ +NEA+S I ++
Sbjct: 464 AKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLE 523
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENI 1239
K LK E K+++EEKE IE++I++LE ++G + E IK E+L ++++ +
Sbjct: 524 KALK-EIVKVSEEEKEKIEEAITDLEEALEG-EKEEIKAKIEELQEVTQKL 572
|
Length = 579 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 691 bits (1785), Expect = 0.0
Identities = 335/597 (56%), Positives = 427/597 (71%), Gaps = 35/597 (5%)
Query: 4 KIIGIDLGTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITN 62
K IGIDLGTTNS VAV+ G P+VIEN+EG R TPSVV ++++ ++VG AKRQA+ N
Sbjct: 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDN 65
Query: 63 PNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGD-AWVEVKDKKLAPPQISAEIL 121
P NT+++IKR IGR NG VEV KK P +ISA IL
Sbjct: 66 PENTIFSIKRKIGRG--------------------SNGLKISVEVDGKKYTPEEISAMIL 105
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K AE +L EK+ AVITVPAYFND+QRQATKDA +IAGL VLR+INEPTAAALAYG
Sbjct: 106 TKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYG 165
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDK ++ ++VYDLGGGTFD+S++EI G+ FEVL+T GD LGG+DFD +I++L
Sbjct: 166 LDKG-KEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDYL 220
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ EFK + G+DL D A+QRL+EAAEKAKIELS+A QT INLP I D L ++
Sbjct: 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKEL 276
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L+ DL+ ++++P E AL DA ++KS I +ILVGG TR+P VQ++V EFF KE
Sbjct: 277 TRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKE 336
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+K INPDEAVA+GA++QA VLSG V DVLLLDV PL+LGIET+GGV TP+IE+NTTIP
Sbjct: 337 PEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPV 396
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
+K+Q FSTA D QT+V IH QGER+ A+ NKSLG+F+L+ I PAPRGVPQIEV+FD+DA
Sbjct: 397 KKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDA 456
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE-- 539
NGILNVTAKD TGKEQSI IK+S GLS+ EIE M++DAE N+ LDKKF ELV+ +NE
Sbjct: 457 NGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAE 516
Query: 540 -QIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNF 595
I LE+ V +++E + E+ I L+E +E E+ + ++ +
Sbjct: 517 SLIYSLEKALKEIVKVSEEEKEKIEEAITDLEE-ALEGEKEEIKAKIEELQEVTQKL 572
|
Length = 579 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 659 bits (1702), Expect = 0.0
Identities = 311/584 (53%), Positives = 417/584 (71%), Gaps = 9/584 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + GKP ++ N+EG RTTPSVV YT++ +VG AKRQA+ NP NT +++
Sbjct: 47 GTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSV 106
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVE--VKDQYCAPPQISAEILKKMKSTA 768
KR IGRK ++ V ++ K V Y++V +NG+ ++ + A +ISA++L+K+ A
Sbjct: 107 KRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 164
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
FLN+K+ KAVITVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAA+LAYG +KK ++
Sbjct: 165 SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNE 224
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+V +DLGGGTFD+SV+E+ G+ FEVLST+GDT LGG+DFD RI++ L FK +
Sbjct: 225 TILV-FDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKD 279
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A+QRL EAAEKAKIELS+ QT I+LP+ITA +GPKH++ +TR+K E
Sbjct: 280 EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEE 339
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DL+ + P E AL DAK+ I E+ILVGG TR+P VQ++V + K+ +NP
Sbjct: 340 LCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNP 399
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DE VA+GA+VQAGVL+G V D++LLDVTPL+LG+ET+GGVMT +I +NTT+PT K++VFS
Sbjct: 400 DEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 459
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA D QTSV I+ LQGER+ NKSLG F L+ I PAPRGVPQIEV FD+DANGIL+V+
Sbjct: 460 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 519
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
A DK TGK+Q I I + L + E+E M+++AE ++ DK+ + V KN+ADS + +
Sbjct: 520 ATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTE 579
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDL 1232
K LK+ K+ + KE +E + L+ I + +K L
Sbjct: 580 KQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAAL 623
|
Length = 673 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 647 bits (1671), Expect = 0.0
Identities = 309/565 (54%), Positives = 409/565 (72%), Gaps = 17/565 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K++GIDLGTTNS VA + GKP ++ N+EG RTTPSVV YT++ +VG AKRQA+ NP
Sbjct: 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVE--VKDKKLAPPQISAEIL 121
NT +++KR IGRK ++ V K V Y++V +NG+ ++ K+ A +ISA++L
Sbjct: 100 ENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 157
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+ A FLN+K+ KAVITVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAA+LAYG
Sbjct: 158 RKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 217
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
+KK ++ I+V +DLGGGTFD+SV+E+ G+ FEVLST+GDT LGG+DFD RI++ L
Sbjct: 218 FEKKSNETILV-FDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
FK + G+DL D A+QRL EAAEKAKIELS+ QT I+LP+ITA +GPKH++ +
Sbjct: 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTL 332
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L DL+ + P E AL DAK+ I E+ILVGG TR+P VQ++V + K+
Sbjct: 333 TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKD 392
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+NPDE VA+GA+VQAGVL+G V D++LLDVTPL+LG+ET+GGVMT +I +NTT+PT
Sbjct: 393 PNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPT 452
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
K++VFSTA D QTSV I+ LQGER+ NKSLG F L+ I PAPRGVPQIEV FD+DA
Sbjct: 453 SKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 512
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQI 541
NGIL+V+A DK TGK+Q I I + L + E+E M+++AE ++ DK+ + V KN+
Sbjct: 513 NGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQAD 572
Query: 542 IILEEKFCSFVLETKKETDYDEDKI 566
S V +T+K+ DK+
Sbjct: 573 --------SVVYQTEKQLKELGDKV 589
|
Length = 673 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 635 bits (1640), Expect = 0.0
Identities = 256/380 (67%), Positives = 307/380 (80%), Gaps = 5/380 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+IGIDLGTTNSCVAV+ P+VIEN+EG RTTPSVV +T+D +VG+PAKRQA+TNP
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTLYA KRLIGR++ D VQ +K VPYKIV A NGDAWVE KK +P QI A +L K
Sbjct: 63 ENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVLMK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L + ++ AVITVPAYFNDSQRQATKDAG+IAGL VLR+INEPTAAALAYGLD
Sbjct: 123 MKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
KK DD++I VYDLGGGTFDIS++EI FEV STNGDTFLGGEDFD ++ HL+
Sbjct: 183 KK-DDKVIAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRHLVK 237
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK E G+DL+ D++A+QRL+EAAEKAKIELS++ QTDINLPYITAD +GPKHLN+K+TR
Sbjct: 238 EFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTR 297
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K ESLV DLI ++++PC+ AL DA + KS I E+ILVGG TRMP VQ+ V E F KE
Sbjct: 298 AKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPS 357
Query: 364 KDINPDEAVAVGASVQAGVL 383
K +NPDEAVA+GA++Q GVL
Sbjct: 358 KGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 624 bits (1612), Expect = 0.0
Identities = 252/373 (67%), Positives = 302/373 (80%), Gaps = 5/373 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ P+VIEN+EG RTTPSVV +T+D +VG+PAKRQA+TNP NTLYA
Sbjct: 10 GTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPENTLYAT 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D VQKDIK VPYKIV A NGDAWVE + +P QI A +L KMK TAE
Sbjct: 70 KRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVLMKMKETAEA 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L + ++ AVITVPAYFNDSQRQATKDAG+IAGL VLR+INEPTAAALAYGLDKK DD++
Sbjct: 130 YLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK-DDKV 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++EI FEV STNGDTFLGGEDFD ++ HL+ EFK E G
Sbjct: 189 IAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQG 244
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL+ D++A+QRL+EAAEKAKIELS++ QTDINLPYITAD +GPKHLN+K+TR+K ESLV
Sbjct: 245 IDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKFESLV 304
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DLI ++++PC+ AL DA + KS I E+ILVGG TRMP VQ+ V E F KE K +NPDE
Sbjct: 305 GDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDE 364
Query: 1011 AVAVGASVQAGVL 1023
AVA+GA++Q GVL
Sbjct: 365 AVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 645 bits (1664), Expect = 0.0
Identities = 319/565 (56%), Positives = 432/565 (76%), Gaps = 10/565 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCVA ++ K +V+ENSEG RTTPSVV + ++ VGL AKRQAITNP +T YA+
Sbjct: 35 GTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQSTFYAV 93
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKD--QYCAPPQISAEILKKMKSTA 768
KRLIGR++ DE +QKDIK VPYKIV A NGDAWV+ + QY +P QI A +L+KMK TA
Sbjct: 94 KRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQY-SPSQIGAFVLEKMKETA 152
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E FL K+ AV+T PAYFND+QRQATKDAG IAGL V+R++NEPTAAALAYG+DK D
Sbjct: 153 ENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDS 212
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+I VYDLGGGTFDISV+EIA FEV +TNGDT LGGEDFD+ + ++++ EF+
Sbjct: 213 -LIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYILEEFRKT 267
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
+G+DLS + +A+QR++EAAEKAK ELS+A +T++NLP+ITA+ +G +H+ + I+RSK E
Sbjct: 268 SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEG 327
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+ + LI +S+ PC+ + DA ++ +I++++LVGG TRMP V + V +FF+K+ + +NP
Sbjct: 328 ITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNP 387
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DEAVA+GA+ GVL G VK ++LLDVTPL+LGIET+GGV T +I KNTTIPT+K+Q FS
Sbjct: 388 DEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFS 447
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA DNQT V I QGER+ A+ N+ +G+FDL I PAPRGVPQIEV+FD+DANGI +VT
Sbjct: 448 TAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVT 507
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKDK TGK Q+I I ++GGLS+ +IE MI+D+E ++E D+ ELV+ +N A++ ++ +
Sbjct: 508 AKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAE 567
Query: 1189 KNLKDENTKITDEEKESIEKSISNL 1213
+ L E ++D EKE+++ ++ L
Sbjct: 568 RQLG-EWKYVSDAEKENVKTLVAEL 591
|
Length = 657 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 639 bits (1649), Expect = 0.0
Identities = 317/569 (55%), Positives = 429/569 (75%), Gaps = 14/569 (2%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IG+DLGTT SCVA ++ K +V+ENSEG RTTPSVV + ++ VGL AKRQAITNP
Sbjct: 29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQ 87
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKD-KKLAPPQISAEILKK 123
+T YA+KRLIGR++ DE +Q +K VPYKIV A NGDAWV+ + K+ +P QI A +L+K
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEK 147
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE FL K+ AV+T PAYFND+QRQATKDAG IAGL V+R++NEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K D +I VYDLGGGTFDISV+EIA FEV +TNGDT LGGEDFD+ + ++++
Sbjct: 208 KTKDS-LIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EF+ +G+DLS + +A+QR++EAAEKAK ELS+A +T++NLP+ITA+ +G +H+ + I+R
Sbjct: 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISR 322
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
SK E + + LI +S+ PC+ + DA ++ +I++++LVGG TRMP V + V +FF+K+
Sbjct: 323 SKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPF 382
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
+ +NPDEAVA+GA+ GVL G VK ++LLDVTPL+LGIET+GGV T +I KNTTIPT+K
Sbjct: 383 RGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKK 442
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+Q FSTA DNQT V I QGER+ A+ N+ +G+FDL I PAPRGVPQIEV+FD+DANG
Sbjct: 443 SQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANG 502
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE---Q 540
I +VTAKDK TGK Q+I I ++GGLS+ +IE MI+D+E ++E D+ ELV+ +N Q
Sbjct: 503 ICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQ 562
Query: 541 IIILEEKFCSFVLETKKETDYDEDKIRKL 569
+ E + E K +D +++ ++ L
Sbjct: 563 LTTAERQLG----EWKYVSDAEKENVKTL 587
|
Length = 657 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 607 bits (1568), Expect = 0.0
Identities = 236/382 (61%), Positives = 296/382 (77%), Gaps = 10/382 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P VI N+EG RTTPSVV +T+ +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK--DKKLAPPQISAEIL 121
NT+++IKR +GRK+ + + + VPYK+V + G+ VE+ K P +ISA IL
Sbjct: 63 ENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMIL 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+K AE +L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG
Sbjct: 120 QKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK + I+VYDLGGGTFD+S++EI G+ FEVL+TNGDT LGG+DFD RII+ L
Sbjct: 180 LDKK-GNEKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRIIDWL 234
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ EFK E G+DL D +A+QRLKEAAEKAKIELS+ +T+INLP+ITAD GPKHL + +
Sbjct: 235 VEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTL 294
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L EDL+ ++++P + AL DAK+ S I E+ILVGG TR+P VQ++V E F KE
Sbjct: 295 TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKE 354
Query: 362 VKKDINPDEAVAVGASVQAGVL 383
K +NPDE VA+GA++Q GVL
Sbjct: 355 PNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 587 bits (1516), Expect = 0.0
Identities = 228/375 (60%), Positives = 289/375 (77%), Gaps = 10/375 (2%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P VI N+EG RTTPSVV +T+ +VG PAKRQA+TNP NT+++I
Sbjct: 10 GTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPENTIFSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK--DQYCAPPQISAEILKKMKSTA 768
KR +GRK+ + ++ VPYK+V + G+ VE+ + P +ISA IL+K+K A
Sbjct: 70 KRFMGRKFDEVEEERK---VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKEDA 126
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +
Sbjct: 127 EAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-GN 185
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+VYDLGGGTFD+S++EI G+ FEVL+TNGDT LGG+DFD RII+ L+ EFK E
Sbjct: 186 EKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKE 241
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D +A+QRLKEAAEKAKIELS+ +T+INLP+ITAD GPKHL + +TR+K E
Sbjct: 242 EGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L EDL+ ++++P + AL DAK+ S I E+ILVGG TR+P VQ++V E F KE K +NP
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 1009 DEAVAVGASVQAGVL 1023
DE VA+GA++Q GVL
Sbjct: 362 DEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 603 bits (1558), Expect = 0.0
Identities = 246/621 (39%), Positives = 387/621 (62%), Gaps = 37/621 (5%)
Query: 624 QISETGVLFNPDIHE---AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSV 680
QISE G + H+ A+GI GTTNS VA + +G+ +V+ + +G PSV
Sbjct: 5 QISEPGQ--SAAPHQRRLAVGI------DLGTTNSLVATVRSGQAEVLPDEQGRVLLPSV 56
Query: 681 VGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNG 740
V Y ED I VG A+ A +P NT+ ++KR +GR D +Q+ +PY+ VA++NG
Sbjct: 57 VRYLEDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENG 113
Query: 741 DAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800
+ +P ++SAEILK ++ AE L +++ AVITVPAYF+D+QRQATKDA +
Sbjct: 114 MPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173
Query: 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIAN-VDGETQFEV 859
+AGL VLR++NEPTAAA+AYGLD + +I VYDLGGGTFDIS++ ++ V FEV
Sbjct: 174 LAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGV-----FEV 227
Query: 860 LSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ 919
L+T GD+ LGG+DFD + + ++ + + +D + L +AA AK LS+A+
Sbjct: 228 LATGGDSALGGDDFDHLLADWILEQAGLSPRLDPE----DQRLLLDAARAAKEALSDADS 283
Query: 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEII 979
++++ A G +ITR + +L+ L+ ++L C AL DA ++ ++ E++
Sbjct: 284 VEVSV----ALWQG------EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVV 333
Query: 980 LVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTP 1037
+VGG TR+PLV++ V EFF + I+PD+ VA+GA++QA +L+G D+LLLDV P
Sbjct: 334 MVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIP 393
Query: 1038 LTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGK 1097
L+LG+ETMGG++ +I +NTTIP + Q F+T +D QT++ IH +QGER+ + +SL +
Sbjct: 394 LSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLAR 453
Query: 1098 FDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMI 1157
F+L I P G +I V+F +DA+G+L+VTA +K TG E SI +K S GL++ EI M+
Sbjct: 454 FELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARML 513
Query: 1158 KDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLI 1217
KD+ ++E D + L + K EA+ + ++ L + ++ E+ +I+ +++ L +
Sbjct: 514 KDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVA 573
Query: 1218 KGDDIELIKKGNEDLLKISEN 1238
+GDD + I+ + L K ++
Sbjct: 574 QGDDADAIEAAIKALDKATQE 594
|
Length = 616 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 584 bits (1508), Expect = 0.0
Identities = 228/532 (42%), Positives = 345/532 (64%), Gaps = 26/532 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GIDLGTTNS VA + +G+ +V+ + +G PSVV Y ED I VG A+ A +P N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
T+ ++KR +GR D +Q +PY+ VA++NG + +P ++SAEILK ++
Sbjct: 81 TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALR 138
Query: 126 STAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 185
AE L +++ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLD
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 186 PDDRIIVVYDLGGGTFDISVIEIAN-VDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+ +I VYDLGGGTFDIS++ ++ V FEVL+T GD+ LGG+DFD + + ++ +
Sbjct: 199 -QEGVIAVYDLGGGTFDISILRLSKGV-----FEVLATGGDSALGGDDFDHLLADWILEQ 252
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
+ +D + L +AA AK LS+A+ ++++ A G +ITR
Sbjct: 253 AGLSPRLDPE----DQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITRE 298
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ +L+ L+ ++L C AL DA ++ ++ E+++VGG TR+PLV++ V EFF +
Sbjct: 299 QFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLT 358
Query: 365 DINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
I+PD+ VA+GA++QA +L+G D+LLLDV PL+LG+ETMGG++ +I +NTTIP
Sbjct: 359 SIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVA 418
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
+ Q F+T +D QT++ IH +QGER+ + +SL +F+L I P G +I V+F +DA+
Sbjct: 419 RAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDAD 478
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELV 534
G+L+VTA +K TG E SI +K S GL++ EI M+KD+ ++E D + L
Sbjct: 479 GLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALA 530
|
Length = 616 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 596 bits (1539), Expect = 0.0
Identities = 289/584 (49%), Positives = 388/584 (66%), Gaps = 27/584 (4%)
Query: 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 703
P G GTT SCV V N ++I N +G RTTPS V +T+ R+I G AK Q NP
Sbjct: 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVARNP 63
Query: 704 NNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCA------PPQIS 757
NT++ KRLIGRK+ D +VQ D+K P+K+ + +EV Y P +IS
Sbjct: 64 ENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEV--TYQGEKKTFHPEEIS 121
Query: 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 817
+ +L+KMK AE +L ++++ AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA
Sbjct: 122 SMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 181
Query: 818 LAYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 876
+AYGLDKK D ++ ++++DLGGGTFD+S++ I DG FEV +T GDT LGGEDFD R
Sbjct: 182 IAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIE--DG--IFEVKATAGDTHLGGEDFDNR 237
Query: 877 IINHLIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 935
++ + +FK +N G DLS + A++RL+ E+AK LS++ Q I + + +
Sbjct: 238 LVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY-- 295
Query: 936 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 995
NV I+R++ E L D +L+P E L DA +DK + E++LVGG TR+P VQ ++
Sbjct: 296 --NVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIK 353
Query: 996 EFFE-KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMT 1050
+FF KE K INPDEAVA GA+VQA +L+G V+D+LLLDVTPL+LG+ET GGVMT
Sbjct: 354 DFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMT 413
Query: 1051 PLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 1110
LIE+NTTIPT+K+Q+F+T DNQ V I +GER N LGKF L+ I PAPRGV
Sbjct: 414 KLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGV 473
Query: 1111 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKK 1169
PQIEV+FD+DANGILNV+A+DK TGK I I + G LS+ +I+ M+ +AE D+
Sbjct: 474 PQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEA 533
Query: 1170 FEELVKCKNEADSTISIVKKNLKDEN--TKITDEEKESIEKSIS 1211
E V+ KN ++ +K L+DE K++D +K +IEK+I
Sbjct: 534 NRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAID 577
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 292/611 (47%), Positives = 397/611 (64%), Gaps = 27/611 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTT SCV V N ++I N +G RTTPS V +T+ R+I G AK Q NP N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVARNPEN 65
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEIL 121
T++ KRLIGRK+ D +VQ+ +K P+K+ + +EV + K P +IS+ +L
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+KMK AE +L ++++ AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 182 LDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
LDKK D ++ ++++DLGGGTFD+S++ I DG FEV +T GDT LGGEDFD R++
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIE--DG--IFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 241 LIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 299
+ +FK +N G DLS + A++RL+ E+AK LS++ Q I + + + NV
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NV 297
Query: 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 359
I+R++ E L D +L+P E L DA +DK + E++LVGG TR+P VQ ++ +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 360 -KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPLIE 414
KE K INPDEAVA GA+VQA +L+G V+D+LLLDVTPL+LG+ET GGVMT LIE
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 415 KNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIE 474
+NTTIPT+K+Q+F+T DNQ V I +GER N LGKF L+ I PAPRGVPQIE
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 475 VSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFEEL 533
V+FD+DANGILNV+A+DK TGK I I + G LS+ +I+ M+ +AE D+ E
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRER 537
Query: 534 VKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAK 593
V+ KN E +C + T ++ + K+ + IE I E + + ++ K
Sbjct: 538 VEAKNGL-----ENYCYSMKNTLQDEKV-KGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 594 NFDSNQTKESE 604
++ KE E
Sbjct: 592 EEFEHKQKEVE 602
|
Length = 653 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 579 bits (1495), Expect = 0.0
Identities = 246/594 (41%), Positives = 372/594 (62%), Gaps = 20/594 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + +G P+V+ ++EG PSVV Y +D + VG A A +P NT+ ++
Sbjct: 7 GTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSV 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+GR D K ++PY+ V + P ++SAEILKK+K AE
Sbjct: 67 KRLMGRSIED---IKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEE 123
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
L + AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLDK + I
Sbjct: 124 SLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-SEGI 182
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + ++ + I
Sbjct: 183 YAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILKQLGISAD 238
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++ L +Q AA AK L++AE +++ K K+TR + E+L+
Sbjct: 239 LNPEDQRLLLQ----AARAAKEALTDAESVEVDF------TLDGKDFKGKLTRDEFEALI 288
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ L+ K+L C AL DA + +I ++LVGG TRMPLV++ V+E F +E DI+PD+
Sbjct: 289 QPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQ 348
Query: 1011 AVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
VA+GA++QA +L+G + D+LLLDVTPL+LGIETMGG++ +I +NT IP + Q F+
Sbjct: 349 VVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFT 408
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
T +D QT++ IH +QGER+ +SL +F+L I P G +I V+F +DA+G+L V+
Sbjct: 409 TYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVS 468
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
A+++ TG EQSI +K S GLS+ EIE M+KD+ ++E D L + K EA+ + ++
Sbjct: 469 AQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQ 528
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L + ++++E+ +I+ ++ L+ ++GDD + IK E L + ++N +
Sbjct: 529 AALAADGDLLSEDERAAIDAAMEALQKALQGDDADAIKAAIEALEEATDNFAAR 582
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 558 bits (1440), Expect = 0.0
Identities = 240/543 (44%), Positives = 346/543 (63%), Gaps = 20/543 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+GIDLGTTNS VA + +G P+V+ ++EG PSVV Y +D + VG A A +P
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ ++KRL+GR D ++L PY+ V + + P ++SAEILKK+
Sbjct: 61 NTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE L + AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLDK
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+ I VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + ++ +
Sbjct: 178 A-SEGIYAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILKQ 232
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
I ++ L +Q AA AK L++AE +++ K K+TR
Sbjct: 233 LGISADLNPEDQRLLLQ----AARAAKEALTDAESVEVDF------TLDGKDFKGKLTRD 282
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ E+L++ L+ K+L C AL DA + +I ++LVGG TRMPLV++ V+E F +E
Sbjct: 283 EFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLT 342
Query: 365 DINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
DI+PD+ VA+GA++QA +L+G + D+LLLDVTPL+LGIETMGG++ +I +NT IP
Sbjct: 343 DIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVA 402
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
+ Q F+T +D QT++ IH +QGER+ +SL +F+L I P G +I V+F +DA+
Sbjct: 403 RAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDAD 462
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQII 542
G+L V+A+++ TG EQSI +K S GLS+ EIE M+KD+ ++E D L + K E
Sbjct: 463 GLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAER 522
Query: 543 ILE 545
ILE
Sbjct: 523 ILE 525
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 483 bits (1244), Expect = e-160
Identities = 213/380 (56%), Positives = 283/380 (74%), Gaps = 9/380 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
IIGIDLGTTNSCVAV++ P +IEN+EG RTTPS+V +T+ I+VG AKRQ +P
Sbjct: 3 TIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKT-GILVGEAAKRQEALHP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT +A KRLIGR++ D VQ +K+ YKIV NGDAW+ KK +P QI++ +LKK
Sbjct: 62 ENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKK 121
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K TAE +L +++++AVITVPAYFNDSQRQATKDAG +AGL+VLRIINEPTAAALAYG+D
Sbjct: 122 LKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGID 181
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +++ I VYDLGGGTFDIS++ I + FEV +TNGDT LGGEDFD I+ ++I
Sbjct: 182 KRKENKNIAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYIIK 237
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + +DL+ + A+QR+KEAAEKAKIELS++E++ I LPY+ +GPKHL + ITR
Sbjct: 238 EFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITR 293
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E L + + +++ PC+ L DA + K I E+ILVGG TRMP +Q +V E F K+
Sbjct: 294 REFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPS 353
Query: 364 KDINPDEAVAVGASVQAGVL 383
K +NPDEAVA+GA++Q +L
Sbjct: 354 KSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 474 bits (1223), Expect = e-157
Identities = 191/378 (50%), Positives = 260/378 (68%), Gaps = 11/378 (2%)
Query: 6 IGIDLGTTNSCVAVLNN-GKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
IGIDLGTTNS VA ++N GKP++I N EG RTTPSVV + D ++VG AKRQA+ NP
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ KRLIGRK+ D +VQ+ K V A VE+ KK +P ++SA ILKK+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSA-KKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE +L E + +AVITVPAYFND+QR+ATK+A +IAGL V+R+INEPTAAALAYGLDK
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 185 K-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K R I+V+DLGGGTFD+S++E+ FEVL+T GD LGG+DFD + ++L
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+FK + G+DL D A++RLKEAAEKAKI LS++E+ I LP + L V++TR
Sbjct: 236 KFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLG----SGGDLEVELTR 291
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E L+ L+ +++ E L DA + I ++LVGG +R+PLV++++ E F K+
Sbjct: 292 EEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPL 351
Query: 364 KDINPDEAVAVGASVQAG 381
+ I+PDEAVA+GA++ A
Sbjct: 352 RSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 469 bits (1209), Expect = e-155
Identities = 205/373 (54%), Positives = 277/373 (74%), Gaps = 9/373 (2%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV++ P +IEN+EG RTTPS+V +T+ I+VG AKRQ +P NT +A
Sbjct: 10 GTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKT-GILVGEAAKRQEALHPENTFFAT 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D VQ+ +K+ YKIV NGDAW+ + +P QI++ +LKK+K TAE
Sbjct: 69 KRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLKKTAEA 128
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L +++++AVITVPAYFNDSQRQATKDAG +AGL+VLRIINEPTAAALAYG+DK+ +++
Sbjct: 129 YLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKRKENKN 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++ I + FEV +TNGDT LGGEDFD I+ ++I EFK +
Sbjct: 189 IAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYIIKEFKRKYK 244
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL+ + A+QR+KEAAEKAKIELS++E++ I LPY+ +GPKHL + ITR + E L
Sbjct: 245 IDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRREFEQLR 300
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ + +++ PC+ L DA + K I E+ILVGG TRMP +Q +V E F K+ K +NPDE
Sbjct: 301 KSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDE 360
Query: 1011 AVAVGASVQAGVL 1023
AVA+GA++Q +L
Sbjct: 361 AVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 459 bits (1182), Expect = e-151
Identities = 184/373 (49%), Positives = 253/373 (67%), Gaps = 11/373 (2%)
Query: 651 GTTNSCVAVLNN-GKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYA 709
GTTNS VA ++N GKP++I N EG RTTPSVV + D ++VG AKRQA+ NP NT+
Sbjct: 6 GTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGD 65
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAE 769
KRLIGRK+ D +VQ K V A VE+ + +P ++SA ILKK+K AE
Sbjct: 66 FKRLIGRKFDDPLVQSAKK-VIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAE 124
Query: 770 TFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-PDD 828
+L E + +AVITVPAYFND+QR+ATK+A +IAGL V+R+INEPTAAALAYGLDKK
Sbjct: 125 AYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKKDEKG 184
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
R I+V+DLGGGTFD+S++E+ FEVL+T GD LGG+DFD + ++L +FK +
Sbjct: 185 RTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A++RLKEAAEKAKI LS++E+ I LP + L V++TR + E
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLG----SGGDLEVELTREEFEE 296
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L+ L+ +++ E L DA + I ++LVGG +R+PLV++++ E F K+ + I+P
Sbjct: 297 LIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDP 356
Query: 1009 DEAVAVGASVQAG 1021
DEAVA+GA++ A
Sbjct: 357 DEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 454 bits (1171), Expect = e-149
Identities = 204/381 (53%), Positives = 269/381 (70%), Gaps = 13/381 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGIDLGTT SCV V NG+ ++I N +G R TPS V +T+ R+I G AK QA +NP
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLI-GDAAKNQATSNPE 61
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDA-WVEVKDKK--LAPPQISAEIL 121
NT++ +KRLIGRK+ D+ VQ +K++PYK+V D V+VK +K +P +ISA +L
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
KMK AE +L +K++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK ++ I+V+DLGGGTFD+S++ I N FEVL+TNGDT LGGEDFD R++ H
Sbjct: 182 LDKKGGEKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
I FK ++G D+S D A+Q+L+ EKAK LS+ QT I + + ++ + +
Sbjct: 238 IKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGED----FSETL 293
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-K 360
TR+K E L DL K+LKP + L DA + KS I EI+LVGG TR+P VQ+++ EFF K
Sbjct: 294 TRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGK 353
Query: 361 EVKKDINPDEAVAVGASVQAG 381
E + INPDEAVA GA+VQAG
Sbjct: 354 EPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 444 bits (1145), Expect = e-146
Identities = 201/375 (53%), Positives = 264/375 (70%), Gaps = 13/375 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCV V NG+ ++I N +G R TPS V +T+ R+I G AK QA +NP NT++ +
Sbjct: 9 GTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLI-GDAAKNQATSNPENTIFDV 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDA-WVEVKD--QYCAPPQISAEILKKMKST 767
KRLIGRK+ D+ VQKDIK++PYK+V D V+VK + +P +ISA +L KMK
Sbjct: 68 KRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEI 127
Query: 768 AETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD 827
AE +L +K++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK
Sbjct: 128 AEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKGG 187
Query: 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
++ I+V+DLGGGTFD+S++ I N FEVL+TNGDT LGGEDFD R++ H I FK
Sbjct: 188 EKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEHFIKLFKK 243
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 947
++G D+S D A+Q+L+ EKAK LS+ QT I + + ++ + +TR+K E
Sbjct: 244 KHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGED----FSETLTRAKFE 299
Query: 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDI 1006
L DL K+LKP + L DA + KS I EI+LVGG TR+P VQ+++ EFF KE + I
Sbjct: 300 ELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGI 359
Query: 1007 NPDEAVAVGASVQAG 1021
NPDEAVA GA+VQAG
Sbjct: 360 NPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 443 bits (1142), Expect = e-145
Identities = 200/387 (51%), Positives = 265/387 (68%), Gaps = 20/387 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAMNPTN 60
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEIL 121
T++ KRLIGRK++D +VQ+ +K P+K+V G + V+ K P +IS+ +L
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVN-GGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
KMK AE +L + + AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 182 LDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
LDKK +R ++++DLGGGTFD+S++ I + FEV +T GDT LGGEDFD R++NH
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIE----DGIFEVKATAGDTHLGGEDFDNRLVNH 235
Query: 241 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLP--YITADKNGPKHLN 298
+ EFK ++ D+SG+ A++RL+ A E+AK LS++ Q I + + D
Sbjct: 236 FVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID------FY 289
Query: 299 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358
ITR++ E L DL +L+P E L DAK+DKS+I +I+LVGG TR+P VQK++ +FF
Sbjct: 290 TSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFF 349
Query: 359 E-KEVKKDINPDEAVAVGASVQAGVLS 384
KE+ K INPDEAVA GA+VQA +LS
Sbjct: 350 NGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 432 bits (1113), Expect = e-141
Identities = 199/394 (50%), Positives = 264/394 (67%), Gaps = 26/394 (6%)
Query: 639 AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQ 698
AIGI GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 1 AIGI------DLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQ 53
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPP 754
NP NT++ KRLIGRK++D +VQ D+K P+K+V G + V+ + P
Sbjct: 54 VAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVN-GGGKPPIIVEYKGETKTFYPE 112
Query: 755 QISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPT 814
+IS+ +L KMK AE +L + + AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPT
Sbjct: 113 EISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPT 172
Query: 815 AAALAYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 873
AAA+AYGLDKK +R ++++DLGGGTFD+S++ I + FEV +T GDT LGGEDF
Sbjct: 173 AAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIE----DGIFEVKATAGDTHLGGEDF 228
Query: 874 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLP--YITADK 931
D R++NH + EFK ++ D+SG+ A++RL+ A E+AK LS++ Q I + + D
Sbjct: 229 DNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID- 287
Query: 932 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 991
ITR++ E L DL +L+P E L DAK+DKS+I +I+LVGG TR+P VQ
Sbjct: 288 -----FYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQ 342
Query: 992 KMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLS 1024
K++ +FF KE+ K INPDEAVA GA+VQA +LS
Sbjct: 343 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 395 bits (1017), Expect = e-127
Identities = 164/376 (43%), Positives = 232/376 (61%), Gaps = 23/376 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
IGIDLGTTNS VA + +GK +++ + G PSVV Y D I VG A + AI++P
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYG-DGGISVGHDALKLAISDPK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ ++KRL+G+ E ++ + + G + + P ++SAEILK +
Sbjct: 61 NTISSVKRLMGKSI--EDIKK-SFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKAL 117
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE L +I+ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAALAYGLDK
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
K + I VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + L+ +
Sbjct: 178 K-KEGIYAVYDLGGGTFDVSILKL--HKG--VFEVLATGGDSALGGDDFDQLLAELLLKK 232
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
+ +++ + L A KAK LS AE+ ++ + ITR
Sbjct: 233 YGLKSLISDE----DQAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITRE 278
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ E L++ L+ K+L C+ AL DA + I +ILVGG TR+PLVQ+ VS+FF ++
Sbjct: 279 EFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC 338
Query: 365 DINPDEAVAVGASVQA 380
DINPDE VA+GA++QA
Sbjct: 339 DINPDEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-123
Identities = 161/370 (43%), Positives = 229/370 (61%), Gaps = 23/370 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + +GK +++ + G PSVV Y D I VG A + AI++P NT+ ++
Sbjct: 8 GTTNSLVASVLSGKVKILPDENGRVLLPSVVHYG-DGGISVGHDALKLAISDPKNTISSV 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+G+ E ++K +P + + G + P ++SAEILK +K AE
Sbjct: 67 KRLMGKSI--EDIKKSFPYLPI-LEGKNGGIILFHTQQGTVTPVEVSAEILKALKERAEK 123
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
L +I+ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAALAYGLDKK + I
Sbjct: 124 SLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKK-KEGI 182
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + L+ ++ +++
Sbjct: 183 YAVYDLGGGTFDVSILKL--HKG--VFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+ L A KAK LS AE+ ++ + ITR + E L+
Sbjct: 239 ISDE----DQAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITREEFEKLI 284
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ L+ K+L C+ AL DA + I +ILVGG TR+PLVQ+ VS+FF ++ DINPDE
Sbjct: 285 DPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDE 344
Query: 1011 AVAVGASVQA 1020
VA+GA++QA
Sbjct: 345 VVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 373 bits (961), Expect = e-119
Identities = 158/378 (41%), Positives = 228/378 (60%), Gaps = 41/378 (10%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTTNS VAV +GK ++I N+ G TPSVV ED I+VG A+ + IT+P+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
T + KR +G TD+ + ++ ++S+ +L+ +K
Sbjct: 61 TAASFKRFMG---TDKKY---------------------RLGKREFRAEELSSLVLRSLK 96
Query: 126 STAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 185
AE +L E + +AVI+VPAYFND QR+ATK AG++AGL+V R+INEPTAAALAYGL K
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 186 PDDRIIVVYDLGGGTFDISVIEIA-NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
++ +V+DLGGGTFD+SV+E+ V EV ++ GD +LGGEDF +
Sbjct: 157 DEETKFLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEA---- 207
Query: 245 FKIENGVD-LSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F ++G+D D + RL AAE+AK LS+ E+ ++++ + L +TR
Sbjct: 208 FLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTR 261
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E + + L+ + +P E AL DA++ S I EIILVGG TRMP+V+K+VS F +
Sbjct: 262 EEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPL 321
Query: 364 KDINPDEAVAVGASVQAG 381
+NPDE VA+GA++QAG
Sbjct: 322 VHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-113
Identities = 153/373 (41%), Positives = 222/373 (59%), Gaps = 41/373 (10%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV +GK ++I N+ G TPSVV ED I+VG A+ + IT+P+ T +
Sbjct: 6 GTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDLTAASF 65
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +G TD+ + + ++S+ +L+ +K AE
Sbjct: 66 KRFMG---TDKKY---------------------RLGKREFRAEELSSLVLRSLKEDAEA 101
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVI+VPAYFND QR+ATK AG++AGL+V R+INEPTAAALAYGL K ++
Sbjct: 102 YLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEETK 161
Query: 831 IVVYDLGGGTFDISVIEIA-NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIEN 889
+V+DLGGGTFD+SV+E+ V EV ++ GD +LGGEDF + F ++
Sbjct: 162 FLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEA----FLKKH 212
Query: 890 GVD-LSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+D D + RL AAE+AK LS+ E+ ++++ + L +TR + E
Sbjct: 213 GLDFEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTREEFEE 266
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+ + L+ + +P E AL DA++ S I EIILVGG TRMP+V+K+VS F + +NP
Sbjct: 267 ICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNP 326
Query: 1009 DEAVAVGASVQAG 1021
DE VA+GA++QAG
Sbjct: 327 DEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 341 bits (875), Expect = e-104
Identities = 202/601 (33%), Positives = 323/601 (53%), Gaps = 46/601 (7%)
Query: 633 NPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVG 692
D + I G GTTNS +A+ N K +VI++ + P+ + +T +N I
Sbjct: 11 QADFKQERQI--AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTI-- 66
Query: 693 LPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYK-IVAADNGDAWVEVKDQYC 751
N L +IKRL G K EI+ K + ++ + + ++
Sbjct: 67 ---------GNNKGLRSIKRLFG-KTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQL 116
Query: 752 APPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIIN 811
P+I+AEI +K+ AE L I KAVITVPA+FND+ R A KIAG EVLR+I
Sbjct: 117 RIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIA 176
Query: 812 EPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 871
EPTAAA AYGL+K +V YDLGGGTFD+S++ I E F+V++TNGD LGG
Sbjct: 177 EPTAAAYAYGLNKNQKGCYLV-YDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGN 231
Query: 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADK 931
D D+ I +L +F + N +D + A+KAK L+ + + +
Sbjct: 232 DIDVVITQYLCNKFDLPNSIDTL----------QLAKKAKETLTYKDSFNND-------- 273
Query: 932 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 991
N+ I + LE L+ L+ +++ + L A I +ILVGG TR+PL++
Sbjct: 274 ------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIK 325
Query: 992 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTP 1051
+ + F+ ++ DI+PD+AV GA++QA L + LL+DV PL+LG+E GG++
Sbjct: 326 DELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEK 385
Query: 1052 LIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111
+I +NT IP + F+T DNQT + H LQGER+ A+ +SL +F+L + P G
Sbjct: 386 IIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445
Query: 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFE 1171
+ EV+F +DA+GIL+V+A +K + +I +K + G+ + EI+ M+++A N+++D
Sbjct: 446 RAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTR 505
Query: 1172 ELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNED 1231
L + EA++ I +++ + + T +++ E I + N++ + DI LI ++
Sbjct: 506 LLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKE 565
Query: 1232 L 1232
Sbjct: 566 F 566
|
Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 337 bits (865), Expect = e-102
Identities = 193/523 (36%), Positives = 298/523 (56%), Gaps = 44/523 (8%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GID GTTNS +A+ N K +VI++ + P+ + +T +N I N
Sbjct: 22 VGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTI-----------GNNK 70
Query: 66 TLYAIKRLIGRKYTDEIVQT-VLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
L +IKRL G K EI+ T L + + ++ + + +K+L P+I+AEI +
Sbjct: 71 GLRSIKRLFG-KTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYL 129
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K+ AE L I KAVITVPA+FND+ R A KIAG EVLR+I EPTAAA AYGL+K
Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+V YDLGGGTFD+S++ I E F+V++TNGD LGG D D+ I +L +
Sbjct: 190 NQKGCYLV-YDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
F + N +D + A+KAK L+ + + + N+ I +
Sbjct: 245 FDLPNSIDTL----------QLAKKAKETLTYKDSFNND--------------NISINKQ 280
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
LE L+ L+ +++ + L A I +ILVGG TR+PL++ + + F+ ++
Sbjct: 281 TLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338
Query: 365 DINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKT 424
DI+PD+AV GA++QA L + LL+DV PL+LG+E GG++ +I +NT IP
Sbjct: 339 DIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 425 QVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 484
+ F+T DNQT + H LQGER+ A+ +SL +F+L + P G + EV+F +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 485 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELD 527
L+V+A +K + +I +K + G+ + EI+ M+++A N+++D
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKID 501
|
Length = 595 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = 1e-99
Identities = 153/389 (39%), Positives = 224/389 (57%), Gaps = 20/389 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GID G NS VAV G V+ N R TPS+V + E R+I G AK QAI+N N
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLI-GEAAKNQAISNFKN 61
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEIL 121
T+ KRLIGRK+ D VQ LK +P+K+V +G ++V ++K +P Q+ A +L
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K AE L K+ VI+VP+YF D+QR+A DA +IAGL LR++NE TA ALAYG
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 182 LDKK--PDD---RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236
+ K P++ R + D+G + +S++ + + +VLST D LGG DFD
Sbjct: 182 IYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEA 237
Query: 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPK 295
+ H EFK + +D+ + A RL A EK K LS N E +N+ + DK+
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTE-APLNIECLMEDKD--- 293
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
++ KI R + E L L+ + +P E AL +A + K I + +VGG TR+P V+++++
Sbjct: 294 -VSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIA 352
Query: 356 EFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ F KE+ +N DEAVA G ++Q +LS
Sbjct: 353 KVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 1e-96
Identities = 150/386 (38%), Positives = 219/386 (56%), Gaps = 24/386 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G NS VAV G V+ N R TPS+V + E R+I G AK QAI+N NT+
Sbjct: 8 GNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLI-GEAAKNQAISNFKNTVRNF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCA------PPQISAEILKKM 764
KRLIGRK+ D VQK++K +P+K+V +G ++V Y P Q+ A +L K+
Sbjct: 67 KRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKV--NYLGEEKVFSPEQVLAMLLTKL 124
Query: 765 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 824
K AE L K+ VI+VP+YF D+QR+A DA +IAGL LR++NE TA ALAYG+ K
Sbjct: 125 KEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIYK 184
Query: 825 K--PDD---RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879
P++ R + D+G + +S++ + + +VLST D LGG DFD +
Sbjct: 185 TDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEALFE 240
Query: 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHLN 938
H EFK + +D+ + A RL A EK K LS N E +N+ + DK+ ++
Sbjct: 241 HFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTE-APLNIECLMEDKD----VS 295
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
KI R + E L L+ + +P E AL +A + K I + +VGG TR+P V++++++ F
Sbjct: 296 GKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF 355
Query: 999 EKEVKKDINPDEAVAVGASVQAGVLS 1024
KE+ +N DEAVA G ++Q +LS
Sbjct: 356 GKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 1e-90
Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 13/389 (3%)
Query: 4 KIIGIDLGTTNSCVAVLN--NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAIT 61
KIIGIDLGTT S V V G+ +I + G ++ PSVV +T ++VG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQAEH 79
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQIS 117
NP NT+Y KR IG+ +T E ++ +K+ A+ + K + P +I
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 118 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
+ ++ K++ AE +L + KAVI+VPA F++ QR AT A +AGLEVLR+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 178 LAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
LAYGL KK D ++V DLGGGT D+S++ N G F + G+ LGG+DF+ R+
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLL---NKQG-GMFLTRAMAGNNRLGGQDFNQRL 255
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL 297
+ +L + + G + +QRL++A E AKI L+ T I+L +
Sbjct: 256 LQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVK 314
Query: 298 -NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSE 356
++TR + E+L EDL K L P E L + +DK ++ EI+LVGG TR+P +++++
Sbjct: 315 FEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGR 374
Query: 357 FFEKEVKKDINPDEAVAVGASVQAGVLSG 385
FF K+ ++P+ AV G ++QAG++ G
Sbjct: 375 FFGKDPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 4e-85
Identities = 143/382 (37%), Positives = 218/382 (57%), Gaps = 13/382 (3%)
Query: 651 GTTNSCVAVLN--NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLY 708
GTT S V V G+ +I + G ++ PSVV +T ++VG A QA NP NT+Y
Sbjct: 28 GTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQAEHNPQNTIY 86
Query: 709 AIKRLIGRKYTDEIVQKDIKMVPYK-IVAADNGDAWVEVKDQ---YCAPPQISAEILKKM 764
KR IG+ +T E ++ + +K + + NG + V P +I + ++ K+
Sbjct: 87 DAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSRLILKL 146
Query: 765 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 824
+ AE +L + KAVI+VPA F++ QR AT A +AGLEVLR+INEPTAAALAYGL K
Sbjct: 147 RKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALAYGLHK 206
Query: 825 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884
K D ++V DLGGGT D+S++ N G F + G+ LGG+DF+ R++ +L +
Sbjct: 207 KQDVFNVLVVDLGGGTLDVSLL---NKQG-GMFLTRAMAGNNRLGGQDFNQRLLQYLYQK 262
Query: 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL-NVKITR 943
+ G + +QRL++A E AKI L+ T I+L + ++TR
Sbjct: 263 IYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTR 321
Query: 944 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
+ E+L EDL K L P E L + +DK ++ EI+LVGG TR+P +++++ FF K+
Sbjct: 322 DEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKDPN 381
Query: 1004 KDINPDEAVAVGASVQAGVLSG 1025
++P+ AV G ++QAG++ G
Sbjct: 382 TSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-79
Identities = 141/384 (36%), Positives = 218/384 (56%), Gaps = 19/384 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IG+ G T++C+AV +G+ V+ N G R TP+VV +T D +IVGL AK+ I N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFT-DTEVIVGLAAKQGRIRNAAN 61
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWV---EVKDKKLAPPQISAEILK 122
T+ K+++GR Y+D Q KI+ D + E K K ++P +++ I K
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
KMK A++ L + VITVP YF++ Q+ A ++A + AG VLRII+EP+AAALAYG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 183 --DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
D ++VY LGG + D++++ + G + VL+T+ D LGGE F + +
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 241 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS--NAEQTDINLPYITADKNGPKHLN 298
L EFK + D+ G++ AM +L AAE AK LS + + Y D
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQC----- 292
Query: 299 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358
++R++ ESL L K L+P E L A + K+ I++++L GG +R+P +Q+++ + F
Sbjct: 293 -SVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 359 -EKEVKKDINPDEAVAVGASVQAG 381
EV I+PDE +A+GA+ QAG
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 5e-78
Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 19/384 (4%)
Query: 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 705
G G T++C+AV +G+ V+ N G R TP+VV +T D +IVGL AK+ I N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFT-DTEVIVGLAAKQGRIRNAAN 61
Query: 706 TLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWV---EVKDQYCAPPQISAEILK 762
T+ K+++GR Y+D QK+ KI+ D + E K ++ +P +++ I K
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 763 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 822
KMK A++ L + VITVP YF++ Q+ A ++A + AG VLRII+EP+AAALAYG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 823 --DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
D ++VY LGG + D++++ + G + VL+T+ D LGGE F + +
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS--NAEQTDINLPYITADKNGPKHLN 938
L EFK + D+ G++ AM +L AAE AK LS + + Y D
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQC----- 292
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
++R++ ESL L K L+P E L A + K+ I++++L GG +R+P +Q+++ + F
Sbjct: 293 -SVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 999 -EKEVKKDINPDEAVAVGASVQAG 1021
EV I+PDE +A+GA+ QAG
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 3e-77
Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 22/392 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+GIDLG+ VA++ G P +++ N E R TPS V + R+ G A A P
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVP--YKIVAADNGDAWVEVKDKK-LAPPQISAEIL 121
+K L+G+ D V P Y +V G ++ D + + ++ A IL
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 122 KKMKSTAETFLNE-KIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
K AE E ++ VITVP YF +QRQA DA ++AGL VL ++N+ TAAAL Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 181 GLDKKPDD---RIIVVYDLGGGTFDISVIEIANV------DGETQFEVLSTNGDTFLGGE 231
LD++ ++ + ++ YD+G G+ +V+E + V Q EVL D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 232 DFDMRIINHLIYEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA 289
+FD+R+ +HL EF+ ++ VD+ + AM +L + A +AK LS + +++ +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYD 299
Query: 290 DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 349
D KITR++ E L DL +++ P + AL A + I + L+GG TR+P
Sbjct: 300 D----IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPK 355
Query: 350 VQKMVSEFF-EKEVKKDINPDEAVAVGASVQA 380
VQ+ +SE +K++ K +N DEA A+GA+ A
Sbjct: 356 VQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 250 bits (642), Expect = 6e-74
Identities = 126/381 (33%), Positives = 197/381 (51%), Gaps = 22/381 (5%)
Query: 657 VAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIG 715
VA++ G P +++ N E R TPS V + R+ G A A P +K L+G
Sbjct: 12 VALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQQVYLHLKDLLG 70
Query: 716 RKYTDEIVQKDIKMVP--YKIVAADNGDAWVEVKDQ-YCAPPQISAEILKKMKSTAETFL 772
+ D V P Y +V G ++ D + ++ A IL K AE
Sbjct: 71 KPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILNYAKKLAEEHA 130
Query: 773 NE-KIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD--- 828
E ++ VITVP YF +QRQA DA ++AGL VL ++N+ TAAAL Y LD++ ++
Sbjct: 131 KEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRRFENNKP 190
Query: 829 RIIVVYDLGGGTFDISVIEIANV------DGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882
+ ++ YD+G G+ +V+E + V Q EVL D LGG +FD+R+ +HL
Sbjct: 191 QYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLA 250
Query: 883 YEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVK 940
EF+ ++ VD+ + AM +L + A +AK LS + +++ + D K
Sbjct: 251 KEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDD----IDFKTK 306
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-E 999
ITR++ E L DL +++ P + AL A + I + L+GG TR+P VQ+ +SE +
Sbjct: 307 ITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGK 366
Query: 1000 KEVKKDINPDEAVAVGASVQA 1020
K++ K +N DEA A+GA+ A
Sbjct: 367 KKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 6e-71
Identities = 134/391 (34%), Positives = 214/391 (54%), Gaps = 20/391 (5%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++G D+G + +AV G + + N R TPSV+ + NR I G+ AK Q IT+ N
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTI-GVAAKNQQITHAN 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEI 120
NT+ KR GR + D VQ + + Y +V NG V+V ++ + QI+A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K TAE L + + VI+VP++F D++R++ DA +I GL LR++N+ TA AL Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 181 GLDKK----PDD--RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234
G+ K+ D+ RI+V D+G F +S + + +VL T D FLGG++FD
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFD 236
Query: 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK-AKIELSNAEQTDINLPYITADKNG 293
+++ H EFK + +D A+ RL + EK K+ SN+ +N+ DK+
Sbjct: 237 EKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKD- 295
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
++ K+ RS+ E L DL+ + P L + +S + +VGG TR+P V++
Sbjct: 296 ---VSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKER 352
Query: 354 VSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+++FF K+V +N DEAVA G ++Q +LS
Sbjct: 353 IAKFFGKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 2e-69
Identities = 133/385 (34%), Positives = 211/385 (54%), Gaps = 20/385 (5%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G + +AV G + + N R TPSV+ + NR I G+ AK Q IT+ NNT+
Sbjct: 8 GFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTI-GVAAKNQQITHANNTVSNF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR GR + D VQK+ + + Y +V NG V+V ++ + QI+A +L K+K
Sbjct: 67 KRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLLTKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK- 825
TAE L + + VI+VP++F D++R++ DA +I GL LR++N+ TA AL YG+ K+
Sbjct: 127 TAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQD 186
Query: 826 ---PDD--RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
D+ RI+V D+G F +S + + +VL T D FLGG++FD +++ H
Sbjct: 187 LPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFDEKLVEH 242
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEK-AKIELSNAEQTDINLPYITADKNGPKHLNV 939
EFK + +D A+ RL + EK K+ SN+ +N+ DK+ ++
Sbjct: 243 FCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKD----VSG 298
Query: 940 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 999
K+ RS+ E L DL+ + P L + +S + +VGG TR+P V++ +++FF
Sbjct: 299 KMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFG 358
Query: 1000 KEVKKDINPDEAVAVGASVQAGVLS 1024
K+V +N DEAVA G ++Q +LS
Sbjct: 359 KDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 2e-65
Identities = 135/393 (34%), Positives = 211/393 (53%), Gaps = 24/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++GIDLG + VAV G + I N R TP+ + + NR I G AK Q I+N
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSI-GAAAKSQVISNAK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEI 120
NT+ KR GR ++D VQ + Y +V G ++V +++ Q++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K TAE+ L + + V++VP ++ D++R++ DA +IAGL LR++NE TA ALAY
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 181 G--------LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
G L++KP R +V D+G + +SV + + +VL+T DT LGG
Sbjct: 181 GIYKQDLPALEEKP--RNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRK 234
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADK 291
FD ++N+ EF + +D+ A+ RL + EK K +S NA +N+ D
Sbjct: 235 FDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 292 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 351
+ +N R K + +DL+++ P L AK+ K I + +VGG TR+P V+
Sbjct: 295 DVSGTMN----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVK 350
Query: 352 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ +S+FF KEV +N DEAVA G ++Q +LS
Sbjct: 351 EKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 224 bits (571), Expect = 1e-64
Identities = 131/393 (33%), Positives = 219/393 (55%), Gaps = 24/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++GIDLG N +AV +G + I N R TP+ + R I G AK Q +TN
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAI-GNAAKSQIVTNVR 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEI 120
NT++ K+L GR + D IVQT +PY++ NG V+V+ ++ A Q++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K T+E L + + VI++P++F D++R++ A ++AGL LR++NE TA ALAY
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 181 G--------LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
G LD+KP R +V D+G + +SV + + +VL+T D +LGG +
Sbjct: 181 GIYKQDLPALDEKP--RNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRN 234
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADK 291
FD ++++ EFK + +++ +S A+ RL + EK K +S NA +N+ D
Sbjct: 235 FDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDL 294
Query: 292 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 351
+ ++ K+ R++ E L L+++ P + + A + + I I +VGG TR+P V+
Sbjct: 295 D----VSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVK 350
Query: 352 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ ++ FF K++ +N DEAVA G ++Q +LS
Sbjct: 351 EQITSFFLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 1e-61
Identities = 120/385 (31%), Positives = 193/385 (50%), Gaps = 19/385 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
G+DLG NS +AV N ++ N R+TPSVVG+ NR + G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEIL 121
T+ +KR+IG Y + K K+V D+ EV+ + Q++A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 182 LDKKPD------DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 235
+ K RI+ D+G ++ S++ + Q +VL T D GG DFD+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFDL 235
Query: 236 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 295
I H EFK + +D+ + A R+ AAEK K LS + N P+
Sbjct: 236 AITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLS----ANTNAPFSVESVMNDV 291
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +S
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 356 EFFEKEVKKDINPDEAVAVGASVQA 380
E F K + +N DEA+A GA+
Sbjct: 352 EAFGKPLSTTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-61
Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 24/387 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G + VAV G + I N R TP+ + + NR I G AK Q I+N NT+
Sbjct: 8 GFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSI-GAAAKSQVISNAKNTVQGF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR GR ++D VQ + + Y +V G ++V +++ Q++A +L K+K
Sbjct: 67 KRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLLTKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG----- 821
TAE+ L + + V++VP ++ D++R++ DA +IAGL LR++NE TA ALAYG
Sbjct: 127 TAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 186
Query: 822 ---LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 878
L++KP R +V D+G + +SV + + +VL+T DT LGG FD ++
Sbjct: 187 LPALEEKP--RNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 879 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHL 937
N+ EF + +D+ A+ RL + EK K +S NA +N+ D + +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 997
N R K + +DL+++ P L AK+ K I + +VGG TR+P V++ +S+F
Sbjct: 301 N----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 998 FEKEVKKDINPDEAVAVGASVQAGVLS 1024
F KEV +N DEAVA G ++Q +LS
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-60
Identities = 126/387 (32%), Positives = 213/387 (55%), Gaps = 24/387 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G N +AV +G + I N R TP+ + R I G AK Q +TN NT++
Sbjct: 8 GFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAI-GNAAKSQIVTNVRNTIHGF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKS 766
K+L GR + D IVQ + +PY++ NG V+V+ ++ A Q++ +L K+K
Sbjct: 67 KKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGMLLAKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG----- 821
T+E L + + VI++P++F D++R++ A ++AGL LR++NE TA ALAYG
Sbjct: 127 TSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQD 186
Query: 822 ---LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 878
LD+KP R +V D+G + +SV + + +VL+T D +LGG +FD ++
Sbjct: 187 LPALDEKP--RNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 879 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHL 937
++ EFK + +++ +S A+ RL + EK K +S NA +N+ D + +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLD----V 296
Query: 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 997
+ K+ R++ E L L+++ P + + A + + I I +VGG TR+P V++ ++ F
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 998 FEKEVKKDINPDEAVAVGASVQAGVLS 1024
F K++ +N DEAVA G ++Q +LS
Sbjct: 357 FLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-59
Identities = 120/386 (31%), Positives = 194/386 (50%), Gaps = 21/386 (5%)
Query: 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 705
FG G NS +AV N ++ N R+TPSVVG+ NR + G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 706 TLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV-----KDQYCAPPQISAEI 760
T+ +KR+IG Y +++ K K+V D+ EV K + + Q++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVF-SATQLAAMF 118
Query: 761 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 820
+ K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++Y
Sbjct: 119 IDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSY 178
Query: 821 GLDKKPD------DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 874
G+ K RI+ D+G ++ S++ + Q +VL T D GG DFD
Sbjct: 179 GIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFD 234
Query: 875 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGP 934
+ I H EFK + +D+ + A R+ AAEK K LS + N P+
Sbjct: 235 LAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLS----ANTNAPFSVESVMND 290
Query: 935 KHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMV 994
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +
Sbjct: 291 VDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSI 350
Query: 995 SEFFEKEVKKDINPDEAVAVGASVQA 1020
SE F K + +N DEA+A GA+
Sbjct: 351 SEAFGKPLSTTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 2e-59
Identities = 117/393 (29%), Positives = 185/393 (47%), Gaps = 26/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGI+ G T S +A +N GK VI N +G R PS + Y + G AK Q I N
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQ-EYHGNQAKAQLIRNAK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYK---IVAADNGDAWVEV--KDKKLAPPQISAE 119
NT+ + L+G+ +++ V P I E K+ L +++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
L+++K AE FL +K+ AV++VP +F+D Q +A A + AGL VL++I EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 180 YGLDK----KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 235
Y + + DR +VV D GG D+SVI + G + +L+T D LGG+ D
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRG--GL--YTILATAHDPGLGGDTLDD 236
Query: 236 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 295
++ H EF + D ++ A+ +L+ +E K LS + + + + G
Sbjct: 237 ALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VESLAEGID 293
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
+ I R + E L + + A+ A +D I E++LVGG P + +S
Sbjct: 294 -FHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLS 352
Query: 356 EFFEKEVK--------KDINPDEAVAVGASVQA 380
F + K ++P E VA G ++QA
Sbjct: 353 YLFPETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 9e-55
Identities = 118/399 (29%), Positives = 185/399 (46%), Gaps = 34/399 (8%)
Query: 640 IGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQA 699
IGI FG T S +A +N GK VI N +G R PS + Y + G AK Q
Sbjct: 3 IGI--NFG----NTYSSIACINQGKADVIANEDGERQIPSAISYHGEQ-EYHGNQAKAQL 55
Query: 700 ITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQ------YCAP 753
I N NT+ + L+G+ + EI VA + V+ K++
Sbjct: 56 IRNAKNTITNFRDLLGKPF-SEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTV 114
Query: 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEP 813
+++ L+++K AE FL +K+ AV++VP +F+D Q +A A + AGL VL++I EP
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 814 TAAALAYGLDK----KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 869
AA LAY + + DR +VV D GG D+SVI + G + +L+T D LG
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRG--GL--YTILATAHDPGLG 230
Query: 870 GEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA 929
G+ D ++ H EF + D ++ A+ +L+ +E K LS + + + +
Sbjct: 231 GDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VES 287
Query: 930 DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 989
G + I R + E L + + A+ A +D I E++LVGG P
Sbjct: 288 LAEGID-FHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPK 346
Query: 990 VQKMVSEFFEKEVK--------KDINPDEAVAVGASVQA 1020
+ +S F + K ++P E VA G ++QA
Sbjct: 347 LASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-31
Identities = 96/451 (21%), Positives = 169/451 (37%), Gaps = 117/451 (25%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVV-----GYTEDNRIIVGLPAKRQAI 60
+GID GT+NS VAV +G+P+++ G T PS + + ++ G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 61 TNPNNTLY--AIKRLIGRKYTDEIVQTVLKMVPYK---IVAADNGDAWVEVKDKKLAPPQ 115
P ++K +G + +T + +VA
Sbjct: 61 EGPGEGRLMRSLKSFLG---SSLFRETRIFGRRLTFEDLVAR------------------ 99
Query: 116 ISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ----RQATKD---AGKIAGLEVLR 168
L ++K AE L +I++ VI P +F QA A + AG + +
Sbjct: 100 ----FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVE 155
Query: 169 IINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI---ANVDGETQFEVLSTNGD 225
EP AAAL Y ++ ++VV D+GGGT D S++ + + + ++L+ +G
Sbjct: 156 FQYEPIAAALDYEQRLTREELVLVV-DIGGGTSDFSLVRLGPSRRGRADRRADILAHSG- 213
Query: 226 TFLGGEDFDMRIINHLI-----YEFKIENG-----------VDL----------SGDSLA 259
+GG DFD R+ H + +G DL + +L
Sbjct: 214 VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLR 273
Query: 260 MQR--LKEAAEKAKIE------------------------LSNAEQTDINLPYITADKNG 293
R ++A E +E LS+ ++T I+L ++
Sbjct: 274 ELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------ 327
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
L +TR++ E + + + + AL A + I + L GG + +P V++
Sbjct: 328 EVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQA 387
Query: 354 VSEFFEKEVKKDINPDEAVAVG---ASVQAG 381
+ F P + G SV +G
Sbjct: 388 FAARF---------PAARIVEGDAFGSVASG 409
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 1e-28
Identities = 93/446 (20%), Positives = 164/446 (36%), Gaps = 117/446 (26%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVV-----GYTEDNRIIVGLPAKRQAITNPNN 705
GT+NS VAV +G+P+++ G T PS + + ++ G A + P
Sbjct: 6 GTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYLEGPGE 65
Query: 706 TLY--AIKRLIGRKYTDEIVQKDIKMVPYK---IVAADNGDAWVEVKDQYCAPPQISAEI 760
++K +G + + I +VA
Sbjct: 66 GRLMRSLKSFLG---SSLFRETRIFGRRLTFEDLVAR----------------------F 100
Query: 761 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQ----RQATKD---AGKIAGLEVLRIINEP 813
L ++K AE L +I++ VI P +F QA A + AG + + EP
Sbjct: 101 LAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEP 160
Query: 814 TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI---ANVDGETQFEVLSTNGDTFLGG 870
AAAL Y ++ ++VV D+GGGT D S++ + + + ++L+ +G +GG
Sbjct: 161 IAAALDYEQRLTREELVLVV-DIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-VRIGG 218
Query: 871 EDFDMRIINHLI-----YEFKIENG-----------VDL----------SGDSLAMQR-- 902
DFD R+ H + +G DL + +L R
Sbjct: 219 TDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELREL 278
Query: 903 LKEAAEKAKIE------------------------LSNAEQTDINLPYITADKNGPKHLN 938
++A E +E LS+ ++T I+L ++ L
Sbjct: 279 ARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------EVGLE 332
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
+TR++ E + + + + AL A + I + L GG + +P V++ + F
Sbjct: 333 APVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
Query: 999 EKEVKKDINPDEAVAVG---ASVQAG 1021
P + G SV +G
Sbjct: 393 ---------PAARIVEGDAFGSVASG 409
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-21
Identities = 103/433 (23%), Positives = 167/433 (38%), Gaps = 96/433 (22%)
Query: 5 IIGIDLGTTNS--CVAVLNNGKP--QVIENSEGGRT-----TPSVVGYTEDNRIIVGLPA 55
++GID GTT S A L++ P +VI GG P+ + Y
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILY------------ 49
Query: 56 KRQAITNPNNTLYAIKRLIGRKYTDEIVQTVLKMVP--YKIVAADNGDAWVE-VKDKKLA 112
+P L A R+Y + + + +K++ + K K L
Sbjct: 50 ------DPEGKLVAWGYEAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPLP 103
Query: 113 PP----QISAEILKKMKSTAETFLNEKIEKA---------VITVPAYFNDSQRQATKDAG 159
P + A+ L+ + A L + V+TVPA ++D+ +QA ++A
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAA 163
Query: 160 KIAGL-------EVLRIINEPTAAALA------YGLDKKPDDRIIVVYDLGGGTFDISVI 206
AGL + L I+ EP AAAL L+ KP D +V D GGGT D++V
Sbjct: 164 IKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVC-DAGGGTVDLTVY 222
Query: 207 EIANVDGETQFEVLST-----NGDTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLA 259
E+ +V+ + + L+ G TF+ E+ + L YE ++ +L
Sbjct: 223 EVTSVEP-LRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKS------PALW 275
Query: 260 MQRLKEAAEKAKIEL-SNAEQTDINLPYITADKNGPKHLN-----VKITRSKLESL---- 309
+ ++ E K T+I LP A +KI+ ++SL
Sbjct: 276 LILMRF-FETIKRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPV 334
Query: 310 ---VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI 366
+ DLI + L+ E K+ I LVGG P ++ + E F + +
Sbjct: 335 IEEIIDLIEEQLEQAE--------KGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVL 386
Query: 367 NPDE---AVAVGA 376
P + AV GA
Sbjct: 387 RPPDPQLAVVRGA 399
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 7e-18
Identities = 101/422 (23%), Positives = 161/422 (38%), Gaps = 86/422 (20%)
Query: 651 GTTNS--CVAVLNNGKP--QVIENSEGGRT-----TPSVVGYTEDNRII-VGLPAKR--- 697
GTT S A L++ P +VI GG P+ + Y + +++ G A+R
Sbjct: 8 GTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYEAEREYA 67
Query: 698 QAITNPNNTLYAIK---RLIGRKYTDEIVQKD----IKMVPYKIVAADNGDAWVEVKDQY 750
+ L+ L + K ++A D + +
Sbjct: 68 ELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPLPPGKTAVDVIA----DYLRYLYEHA 123
Query: 751 CAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL------ 804
E LKK F IE V+TVPA ++D+ +QA ++A AGL
Sbjct: 124 L-------EELKK-TYGNGEFTALDIE-WVLTVPAIWSDAAKQAMREAAIKAGLVSSREG 174
Query: 805 -EVLRIINEPTAAALA------YGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF 857
+ L I+ EP AAAL L+ KP D +V D GGGT D++V E+ +V+ +
Sbjct: 175 PDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVC-DAGGGTVDLTVYEVTSVEP-LRL 232
Query: 858 EVLST-----NGDTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 910
+ L+ G TF+ E+ + L YE ++ +L + ++ E
Sbjct: 233 KELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKS------PALWLILMRF-FETI 285
Query: 911 KIEL-SNAEQTDINLPYITADKNGPKHLN-----VKITRSKLESL-------VEDLISKS 957
K T+I LP A +KI+ ++SL + DLI +
Sbjct: 286 KRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQ 345
Query: 958 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE---AVAV 1014
L+ E K+ I LVGG P ++ + E F + + P + AV
Sbjct: 346 LEQAE--------KGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVR 397
Query: 1015 GA 1016
GA
Sbjct: 398 GA 399
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-15
Identities = 103/470 (21%), Positives = 177/470 (37%), Gaps = 126/470 (26%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IG D GT N VAV+ +GKP+++ PS + + + + ++
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPTREAVSEWLYRHLDVPAYDD 61
Query: 66 -TLYAIKRLIGRKYTDEI---VQTVLKMVPYKIVAADNGDAWVE-------VKDKK---- 110
++R I ++I Q+V ++E VK K
Sbjct: 62 ERQALLRRAIRYNREEDIDVTAQSVF-------FGLAALAQYLEDPEEVYFVKSPKSFLG 114
Query: 111 ---LAPPQIS------AEILKKMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQAT- 155
L P Q++ ++ +K AE L I +AVI P F ++ RQA
Sbjct: 115 ASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEG 174
Query: 156 --KDAGKIAGLEVLRIINEPTAAALAY--GLDKKPDDRIIVVYDLGGGTFDISVIE---- 207
+ A K AG + + EP AA L + L + + R++VV D+GGGT D S++
Sbjct: 175 ILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE--EKRVLVV-DIGGGTTDCSMLLMGPS 231
Query: 208 -IANVDGETQFEVLSTNGDTFLGGEDFDMRI-INHLIYEF----KIENGVDL-------- 253
D L +G +GG D D+ + L+ + E G+ L
Sbjct: 232 WRGRADRSASL--LGHSGQR-IGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNA 288
Query: 254 -------------SGDSLAM--QRLKEAAE------------------------KAKIEL 274
S + + +++A E +AKI L
Sbjct: 289 VAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIAL 348
Query: 275 SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK 334
S+ +T +L +I+ L +I++ LE + +++ L+ ++AL+ A++ K
Sbjct: 349 SDQAETRASLDFISDG------LATEISQQGLEEAISQPLARILELVQLALDQAQV---K 399
Query: 335 ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG---ASVQAG 381
I L GG R PL++ +++ P + G SV AG
Sbjct: 400 PDVIYLTGGSARSPLIRAALAQQL---------PGIPIVGGDDFGSVTAG 440
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-12
Identities = 79/345 (22%), Positives = 135/345 (39%), Gaps = 100/345 (28%)
Query: 753 PPQIS------AEILKKMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQAT---KDA 798
P Q++ ++ +K AE L I +AVI P F ++ RQA + A
Sbjct: 120 PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERA 179
Query: 799 GKIAGLEVLRIINEPTAAALAY--GLDKKPDDRIIVVYDLGGGTFDISVIE-----IANV 851
K AG + + EP AA L + L + + R++VV D+GGGT D S++
Sbjct: 180 AKRAGFKDVEFQFEPVAAGLDFEATLTE--EKRVLVV-DIGGGTTDCSMLLMGPSWRGRA 236
Query: 852 DGETQFEVLSTNGDTFLGGEDFDMRI-INHLIYEF----KIENGVDL------------- 893
D L +G +GG D D+ + L+ + E G+ L
Sbjct: 237 DRSASL--LGHSGQR-IGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293
Query: 894 --------SGDSLAM--QRLKEAAE------------------------KAKIELSNAEQ 919
S + + +++A E +AKI LS+ +
Sbjct: 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAE 353
Query: 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEII 979
T +L +I+ L +I++ LE + +++ L+ ++AL+ A++ K I
Sbjct: 354 TRASLDFISDG------LATEISQQGLEEAISQPLARILELVQLALDQAQV---KPDVIY 404
Query: 980 LVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG---ASVQAG 1021
L GG R PL++ +++ P + G SV AG
Sbjct: 405 LTGGSARSPLIRAALAQQL---------PGIPIVGGDDFGSVTAG 440
|
Length = 450 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-11
Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 131/407 (32%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V V G V+ +E PSVV T+ +I+ VG AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VL--NE-----PSVVAIDTKTGKILAVGEEAKE------ 45
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
++GR P I E+++
Sbjct: 46 ---------MLGR-----------------------------------TPGNI--EVIRP 59
Query: 124 MKS-------TAETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLE 165
+K E L I+K VI VP+ + +R+A DA AG
Sbjct: 60 LKDGVIADFEATEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAR 119
Query: 166 VLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 224
+ +I EP AAA+ GLD +P ++V D+GGGT +I+VI G V+S
Sbjct: 120 EVYLIEEPLAAAIGAGLDIFEPKGNMVV--DIGGGTTEIAVIS----LGGI---VVS--- 167
Query: 225 DTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI 282
+ GG+DFD II ++ ++ + G + AE+ KIE+ +A D
Sbjct: 168 -KSIRVGGDDFDEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLDE 213
Query: 283 NLPYITADKNG----PKHLNV--KITRSKLESLVE---DLISKSLKPC--EVALNDAKID 331
++ P+ + V + R L+ ++ + I L+ E+A
Sbjct: 214 EETMEVKGRDLVTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPELA------- 266
Query: 332 KSKISE--IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 376
+ I + I+L GG + + +++SE V+ +P VA GA
Sbjct: 267 -ADILDRGIVLTGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGA 312
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|216249 pfam01025, GrpE, GrpE | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 8e-11
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKL 569
E E E ++ L EL++ EE+ + K+ + +L E +K T+ + ++ +K
Sbjct: 4 EEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEF-----ENYRKRTEREREEAKKY 58
Query: 570 KEIVIENIIIELIPITDSMEMFAKNFDSNQTKES--EIIFLIFKLIKKFYKKFNIKQISE 627
IE +L+P+ D++E N+ +S E + +I K + K +K +++I
Sbjct: 59 A---IEKFAKDLLPVLDNLERALAAAKENEDVKSLVEGVEMILKQLLKVLEKHGVEKIEP 115
Query: 628 TGVLFNPDIHEAIGIYPTFGKKKGT 652
G F+P++HEA+ P+ K GT
Sbjct: 116 EGEPFDPNLHEAVSQVPSDEKPPGT 140
|
Length = 165 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 4e-10
Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 61/276 (22%)
Query: 768 AETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
E L I+K VI VP+ + +R+A DA AG + +I EP AA
Sbjct: 71 TEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAA 130
Query: 817 ALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL--GGEDF 873
A+ GLD +P ++V D+GGGT +I+VI G V+S + GG+DF
Sbjct: 131 AIGAGLDIFEPKGNMVV--DIGGGTTEIAVIS----LGGI---VVS----KSIRVGGDDF 177
Query: 874 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG 933
D II ++ ++ + G + AE+ KIE+ +A D ++
Sbjct: 178 DEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLDEEETMEVKGRDL 224
Query: 934 ----PKHLNV--KITRSKLESLVE---DLISKSLKPC--EVALNDAKIDKSKISE--IIL 980
P+ + V + R L+ ++ + I L+ E+A + I + I+L
Sbjct: 225 VTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPELA--------ADILDRGIVL 276
Query: 981 VGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 1016
GG + + +++SE V+ +P VA GA
Sbjct: 277 TGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGA 312
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-09
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 76/284 (26%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAIT 61
K IGIDLGT N+ V V G ++ N PSVV T+ +++ VG AK
Sbjct: 9 KDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIDTKTGKVLAVGEEAKE---- 55
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
++GR P I A +KD +A + + +L
Sbjct: 56 -----------MLGR-------------TPGNIEAIR------PLKDGVIADFEATEAML 85
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+ A + + VI VP+ + +R+A ++A + AG + +I EP AAA+ G
Sbjct: 86 RYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAG 145
Query: 182 LD-KKPDDRIIVVYDLGGGTFDISVI---EIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
L +P ++V D+GGGT +++VI I V E+ + G++ D I
Sbjct: 146 LPVTEPVGNMVV--DIGGGTTEVAVISLGGI--VYSES----------IRVAGDEMDEAI 191
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTD 281
+ ++ ++ + L G+ AE+ KIE+ +A D
Sbjct: 192 VQYVRRKYNL-----LIGER--------TAEEIKIEIGSAYPLD 222
|
Length = 335 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 76/281 (27%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N+ V V K + I +E PSVV A R
Sbjct: 5 IGIDLGTANTLVYV----KGRGIVLNE-----PSVV-------------AIRTDRDAKTK 42
Query: 66 TLYAI----KRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
++ A+ K ++G+ P IVA +KD +A +++ +++
Sbjct: 43 SILAVGHEAKEMLGK-------------TPGNIVAIR------PMKDGVIADFEVTEKMI 83
Query: 122 K---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
K K + ++F +I VI VP+ +R+A K++ AG + +I EP AAA+
Sbjct: 84 KYFIKQVHSRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAI 140
Query: 179 AYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
GL ++P ++V D+GGGT +++VI + + V+S + +GG++FD I
Sbjct: 141 GAGLPVEEPTGSMVV--DIGGGTTEVAVISLGGI-------VVSRS--IRVGGDEFDEAI 189
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 278
IN++ + + G ++ AE+ KIE+ +A
Sbjct: 190 INYIRRTYNLLIG-------------EQTAERIKIEIGSAY 217
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 2e-09
Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 91/387 (23%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V V G ++ N PSVV T+ +++ VG AK+
Sbjct: 4 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAINTKTKKVLAVGNEAKK------ 48
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILK- 122
++GR P IVA +KD +A +++ +LK
Sbjct: 49 ---------MLGR-------------TPGNIVAVR------PLKDGVIADFEVTEAMLKY 80
Query: 123 --KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
K + ++ VI VP+ + +R+A K+A K AG + +I EP AAA+
Sbjct: 81 FIKKVHGRRSLSKPRV---VICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGA 137
Query: 181 GLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239
GL ++P ++V D+GGGT +++VI + + V S + G++ D II
Sbjct: 138 GLPVEEPTGNMVV--DIGGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDEAIIK 186
Query: 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG------ 293
++ ++ + G AE+ KIE+ +A T+ + G
Sbjct: 187 YIRKKYNLLIGE-------------RTAERIKIEIGSAYPTEEEE---KMEIRGRDLVTG 230
Query: 294 -PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK-ISE--IILVGGQTRMPL 349
PK ++I+ ++ +++ +S ++ + L + + I + I+L GG +
Sbjct: 231 LPK--TIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRG 288
Query: 350 VQKMVSEFFEKEVKKDINPDEAVAVGA 376
+ K++S+ V +P VA+G
Sbjct: 289 LDKLLSDETGLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 97/382 (25%), Positives = 163/382 (42%), Gaps = 81/382 (21%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N V N G +I N PSVV + + ++ + +
Sbjct: 7 IGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTE--------- 48
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
K +IG+ P KIVA +KD +A ++ ++LK++
Sbjct: 49 ----AKNMIGK-------------TPGKIVAVR------PMKDGVIADYDMTTDLLKQIM 85
Query: 126 STAETFLNEKIEK--AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
A + K V+ P+ +R+A DA K G + + +I EP AAA+ G D
Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GAD 143
Query: 184 KKPDDRII-VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242
D+ + VV D+GGGT ++++I V+S + +GG+ D I++ +
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISFGG--------VVSCH-SIRIGGDQLDEDIVSFVR 194
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA--EQTDINLPYITAD-KNG-PKHLN 298
++ + G + AE+ K+E+ A E + D G PK +
Sbjct: 195 KKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT 241
Query: 299 V---KITRSKLESLVEDL--ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
+ +I + ESL+ L I +L+ C L+ +D+ +IL GG + +++
Sbjct: 242 LESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGIKEW 297
Query: 354 VSEFFEKEVKKDINPDEAVAVG 375
+SE V NP E+VA+G
Sbjct: 298 LSEEIVVPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 556 KKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIF---LIFKL 612
+K T+ + ++ RK IE +L+P+ D++E A + + ++ + K
Sbjct: 19 RKRTEREREEARKY---AIEKFAKDLLPVLDNLER-ALEAAKKEEELKNLVEGVEMTLKQ 74
Query: 613 IKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
+ +K +++I G F+P++HEA+ P+ + GT V VL G
Sbjct: 75 LLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGT---VVEVLQKG 122
|
The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Length = 137 |
| >gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 26/147 (17%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 509 SEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRK 568
E + ++ + +EL+ + EEL ++ + + +F + T++E +
Sbjct: 31 EPEEENELEEEQQEIAELEAQLEEL----KDKYLRAQAEFENLRKRTERE-------REE 79
Query: 569 LKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIF---LIFKLIKKFYKKFNIKQI 625
K+ IE +L+P+ D++E + + ++ E ++ + + +K +++I
Sbjct: 80 AKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEKLGVEEI 139
Query: 626 SETGVLFNPDIHEAIGIYPTFGKKKGT 652
G F+P++HEA+ + + T
Sbjct: 140 GPEGEKFDPNLHEAVQRVESEDVEPNT 166
|
Length = 193 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 67/275 (24%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N+ V V G I +E PSVV + + V L +A
Sbjct: 9 IGIDLGTANTLVYVKGKG----IVLNE-----PSVVAIESEGKTKVVLAVGEEA------ 53
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK-M 124
K+++GR P IVA +KD +A +++ +LK +
Sbjct: 54 -----KQMLGR-------------TPGNIVAI------RPMKDGVIADFEVTELMLKYFI 89
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD- 183
K + + + VI VP+ D +R+A K+A + AG + +I EP AAA+ GL
Sbjct: 90 KKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPI 149
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTF-LGGEDFDMRIINHLI 242
+P +V D+GGGT +++VI G + + +GG+ D II ++
Sbjct: 150 MEPTGS--MVVDIGGGTTEVAVI----SLGGI------VSSSSVRVGGDKMDEAIIVYVR 197
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
++ + G + AEK KIE+ +A
Sbjct: 198 KKYNLLIG-------------ERTAEKIKIEIGSA 219
|
Length = 342 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 67/250 (26%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N V V GK V+ PSVV AI N
Sbjct: 6 IGIDLGTAN--VLVYVKGKGIVLNE-------PSVV-----------------AIDKNTN 39
Query: 66 TLYAI----KRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
+ A+ +R++GR P IVA ++D +A ++ ++L
Sbjct: 40 KVLAVGEEARRMVGR-------------TPGNIVAIR------PLRDGVIADYDVTEKML 80
Query: 122 KKMKSTA---ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
K + A F +I +I +P +++A ++A + AG + + +I EP AAA+
Sbjct: 81 KYFINKACGKRFFSKPRI---MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAI 137
Query: 179 AYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
GLD +P ++V D+GGGT DI+V+ + + V S++ + G+ FD I
Sbjct: 138 GAGLDISQPSGNMVV--DIGGGTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAI 186
Query: 238 INHLIYEFKI 247
I ++ ++K+
Sbjct: 187 IRYIRKKYKL 196
|
Length = 336 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ I++++K+T E L ++ A +P ++ +A + + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 207
A G+D V D+GGGT IS+++
Sbjct: 129 AAVLGIDNG------AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ I++++K+T E L ++ A +P ++ +A + + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 847
A G+D V D+GGGT IS+++
Sbjct: 129 AAVLGIDNG------AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 104 VEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT-------- 155
+ + E L+++ A L +I+ IT P R+
Sbjct: 30 PVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLI 89
Query: 156 --KDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 207
A + G + ++N+ AAALA GL K +D ++VV DLG GT I+++E
Sbjct: 90 PLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVV-DLGTGTTGIAIVE 142
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT----------KDAGKIAGLEVL 807
E L+++ A L +I+ IT P R+ A + G +
Sbjct: 44 EEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPV 103
Query: 808 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 847
++N+ AAALA GL K +D ++VV DLG GT I+++E
Sbjct: 104 AVVNDAVAAALAEGLFGKEEDTVLVV-DLGTGTTGIAIVE 142
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 42/170 (24%)
Query: 767 TAETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 815
E L I+KA VI VP+ + +R+A ++A + AG + +I EP A
Sbjct: 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMA 139
Query: 816 AALAYGLD-KKPDDRIIVVYDLGGGTFDISVI---EIANVDGETQFEVLSTNGDTFLGGE 871
AA+ GL +P ++V D+GGGT +++VI I V E+ + G+
Sbjct: 140 AAIGAGLPVTEPVGNMVV--DIGGGTTEVAVISLGGI--VYSES----------IRVAGD 185
Query: 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTD 921
+ D I+ ++ ++ + L G+ AE+ KIE+ +A D
Sbjct: 186 EMDEAIVQYVRRKYNL-----LIGER--------TAEEIKIEIGSAYPLD 222
|
Length = 335 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ EI++++K T E L ++ A +P + + + + AG+EVL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 211
A + V D+GGGT IS+++ V
Sbjct: 102 AAVLQIKNG------AVVDVGGGTTGISILKKGKV 130
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ EI++++K T E L ++ A +P + + + + AG+EVL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
A + V D+GGGT IS+++ V
Sbjct: 102 AAVLQIKNG------AVVDVGGGTTGISILKKGKV 130
|
Length = 239 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 778 KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDL 836
+ +I +P +++A ++A + AG + + +I EP AAA+ GLD +P ++V D+
Sbjct: 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVV--DI 154
Query: 837 GGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
GGGT DI+V+ + + V S++ + G+ FD II ++ ++K+
Sbjct: 155 GGGTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAIIRYIRKKYKL 196
|
Length = 336 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ EI++++K T E L + A +P + + + + AGLEVL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 211
A LD V D+GGGT IS+++ V
Sbjct: 134 ADVLQLDDG------GVVDIGGGTTGISIVKKGKV 162
|
Length = 277 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ EI++++K T E L + A +P + + + + AGLEVL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
A LD V D+GGGT IS+++ V
Sbjct: 134 ADVLQLDDG------GVVDIGGGTTGISIVKKGKV 162
|
Length = 277 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 40/250 (16%)
Query: 778 KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDL 836
+ VI VP+ + +R+A K+A K AG + +I EP AAA+ GL ++P ++V D+
Sbjct: 95 RVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVV--DI 152
Query: 837 GGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGD 896
GGGT +++VI + + V S + G++ D II ++ ++ + G
Sbjct: 153 GGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDEAIIKYIRKKYNLLIGE----- 198
Query: 897 SLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG-------PKHLNVKITRSKLESL 949
AE+ KIE+ +A T+ + G PK ++I+ ++
Sbjct: 199 --------RTAERIKIEIGSAYPTEEEE---KMEIRGRDLVTGLPK--TIEISSEEVREA 245
Query: 950 VEDLISKSLKPCEVALNDAKIDKSK-ISE--IILVGGQTRMPLVQKMVSEFFEKEVKKDI 1006
+++ +S ++ + L + + I + I+L GG + + K++S+ V
Sbjct: 246 LKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDETGLPVHIAE 305
Query: 1007 NPDEAVAVGA 1016
+P VA+G
Sbjct: 306 DPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 64/355 (18%)
Query: 677 TPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI----KRLIGRKYTDEIVQKDIKMVPY 732
T +++ Y+++ II+ P+ A+ + AI K +IG+ P
Sbjct: 13 TANILVYSKNKGIILNEPSV-VAVDTETKAVLAIGTEAKNMIGK-------------TPG 58
Query: 733 KIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEK--AVITVPAYFNDS 790
KIVA +KD A ++ ++LK++ A + K V+ P+
Sbjct: 59 KIVAVR------PMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAV 112
Query: 791 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRII-VVYDLGGGTFDISVIEIA 849
+R+A DA K G + + +I EP AAA+ G D D+ + VV D+GGGT ++++I
Sbjct: 113 ERRAISDAVKNCGAKNVHLIEEPVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISFG 170
Query: 850 NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK 909
V+S + +GG+ D I++ + ++ + G + AE+
Sbjct: 171 G--------VVSCH-SIRIGGDQLDEDIVSFVRKKYNLLIG-------------ERTAEQ 208
Query: 910 AKIELSNA--EQTDINLPYITAD-KNG-PKHLNV---KITRSKLESLVEDL--ISKSLKP 960
K+E+ A E + D G PK + + +I + ESL+ L I +L+
Sbjct: 209 VKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLED 268
Query: 961 CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015
C L+ +D+ +IL GG + +++ +SE V NP E+VA+G
Sbjct: 269 CPPELSGDIVDRG----VILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 31/176 (17%)
Query: 747 KDQYCAPPQISAEILK---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 803
KD A +++ +++K K + ++F +I VI VP+ +R+A K++ AG
Sbjct: 69 KDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRI---VICVPSGITPVERRAVKESALSAG 125
Query: 804 LEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLST 862
+ +I EP AAA+ GL ++P ++V D+GGGT +++VI + + V+S
Sbjct: 126 AREVYLIEEPMAAAIGAGLPVEEPTGSMVV--DIGGGTTEVAVISLGGI-------VVSR 176
Query: 863 NGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 918
+ +GG++FD IIN++ + + G ++ AE+ KIE+ +A
Sbjct: 177 S--IRVGGDEFDEAIINYIRRTYNLLIG-------------EQTAERIKIEIGSAY 217
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 27/140 (19%)
Query: 780 VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGG 838
VI VP+ D +R+A K+A + AG + +I EP AAA+ GL +P +V D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGS--MVVDIGG 162
Query: 839 GTFDISVIEIANVDGETQFEVLSTNGDTF-LGGEDFDMRIINHLIYEFKIENGVDLSGDS 897
GT +++VI G + + +GG+ D II ++ ++ + G
Sbjct: 163 GTTEVAVI----SLGGI------VSSSSVRVGGDKMDEAIIVYVRKKYNLLIG------- 205
Query: 898 LAMQRLKEAAEKAKIELSNA 917
+ AEK KIE+ +A
Sbjct: 206 ------ERTAEKIKIEIGSA 219
|
Length = 342 |
| >gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-05
Identities = 76/292 (26%), Positives = 118/292 (40%), Gaps = 105/292 (35%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNP 63
+GIDLGT N+ V V GK V+ +E PSVV D + + VG AK+
Sbjct: 8 LGIDLGTANTLVYV--KGKGIVL--NE-----PSVVAIRTDTKKVLAVGEEAKQ------ 52
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
++GR P IVA ++
Sbjct: 53 ---------MLGR-------------TPGNIVA------------------------IRP 66
Query: 124 MKS-------TAETFLNEKIEKA----------VITVPAYFNDSQRQATKDAGKIAGLEV 166
MK E L I+K VI VP+ + +R+A +++ AG
Sbjct: 67 MKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESALGAGARE 126
Query: 167 LRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGD 225
+ +I EP AAA+ GL +P ++V D+GGGT +++VI + + V S +
Sbjct: 127 VYLIEEPMAAAIGAGLPVTEPTGSMVV--DIGGGTTEVAVISLGGI-------VYSKS-- 175
Query: 226 TFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
+GG+ FD IIN++ + + L G+ AE+ KIE+ +A
Sbjct: 176 VRVGGDKFDEAIINYVRRNYNL-----LIGER--------TAERIKIEIGSA 214
|
Length = 334 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 59/280 (21%), Positives = 100/280 (35%), Gaps = 55/280 (19%)
Query: 145 AYFNDSQRQATKDAGKIAGL--EVLRIINEPTA--------AALAYGLDKKPDDRIIVVY 194
+F+ ++R +K+ L L + E + A GL + V
Sbjct: 177 GWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG----VPVA- 231
Query: 195 DLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE-----DFDMRI--INHLIYEFKI 247
GGG I VD L T+G D + H + +
Sbjct: 232 -AGGGDNAAGAIGTGTVDPGDAMMSLGTSG-VVYAVTDKPLPDPAGAVHGFCHALPGGWL 289
Query: 248 ENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDIN------LPYITADK---NGPK- 295
GV LS S +++ +E K +E N AEQ+ LPY+ ++ P+
Sbjct: 290 PMGVTLSATS-SLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA 348
Query: 296 ----------HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 345
+TR+ LE ++ +L+ L +A I I L+GG
Sbjct: 349 RGSFIGLTHNTTRADLTRAVLEG-----VTFALRDSLDILREAGGIP--IQSIRLIGGGA 401
Query: 346 RMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385
+ P ++M+++ F V +E A+GA++ A G
Sbjct: 402 KSPAWRQMLADIFGTPVDV-PEGEEGPALGAAILAAWALG 440
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 59/280 (21%), Positives = 100/280 (35%), Gaps = 55/280 (19%)
Query: 785 AYFNDSQRQATKDAGKIAGL--EVLRIINEPTA--------AALAYGLDKKPDDRIIVVY 834
+F+ ++R +K+ L L + E + A GL + V
Sbjct: 177 GWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG----VPVA- 231
Query: 835 DLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE-----DFDMRI--INHLIYEFKI 887
GGG I VD L T+G D + H + +
Sbjct: 232 -AGGGDNAAGAIGTGTVDPGDAMMSLGTSG-VVYAVTDKPLPDPAGAVHGFCHALPGGWL 289
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDIN------LPYITADK---NGPK- 935
GV LS S +++ +E K +E N AEQ+ LPY+ ++ P+
Sbjct: 290 PMGVTLSATS-SLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA 348
Query: 936 ----------HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 985
+TR+ LE ++ +L+ L +A I I L+GG
Sbjct: 349 RGSFIGLTHNTTRADLTRAVLEG-----VTFALRDSLDILREAGGIP--IQSIRLIGGGA 401
Query: 986 RMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 1025
+ P ++M+++ F V +E A+GA++ A G
Sbjct: 402 KSPAWRQMLADIFGTPVDV-PEGEEGPALGAAILAAWALG 440
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 509 SEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCS-------FVLETKKETD- 560
+E+E + +AEL ELD + +I LE + VL + E +
Sbjct: 19 AEVEQQEEADEAELEDELD--------EADARIAELEAQLAEAQAEERDSVLRARAEVEN 70
Query: 561 ------YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIK 614
D +K K +E EL+P+ D++E + D +I + +K
Sbjct: 71 IRRRAEQDVEKAHKF---ALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLK 127
Query: 615 KFY---KKFNIKQISETGVLFNPDIHEAIGIYPT 645
KF ++ + G FNP++H+AI + +
Sbjct: 128 SLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQES 161
|
Length = 193 |
| >gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 525 ELDKKFEELVKCKNEQIII---LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIEL 581
EL +K ++ E + I L+ +F ++ T+KE + + KE VI +EL
Sbjct: 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEK---SEMVEYGKEQVI----LEL 101
Query: 582 IPITDSME-MFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAI 640
+P+ D+ E A + D N KE I LI++ KK KF +K+I G +F+P H A+
Sbjct: 102 LPVMDNFERALASSGDYNSLKEG--IELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAV 159
Query: 641 GIYPTFGKK 649
GK+
Sbjct: 160 MQEEVEGKQ 168
|
Length = 196 |
| >gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 5e-04
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 574 IENIIIELIPITDSMEMFAKNFDSNQTKE-SEIIFLIFKLIKKFYKKFNIKQISETGVLF 632
+E +I L+P+ DS+E + D N E + L KL +KF+++QI G F
Sbjct: 94 VEKLISALLPVVDSLEQALQLADKNSDPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTF 153
Query: 633 NPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
+P HEA+ + P G NS + V G
Sbjct: 154 DPQQHEAMSMQPAPGAPP---NSVITVFQKG 181
|
Length = 199 |
| >gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 21/129 (16%)
Query: 523 NSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEI------VIEN 576
E E KC E+I L+E+ + ++D + R +E+ V+E
Sbjct: 32 EPEDSTADSETEKC-REEIESLKEQL------FRLAAEFDNFRKRTAREMEENRKFVLEQ 84
Query: 577 IIIELIPITDSMEMFAKNFDSNQTKE--SEIIFLIFKLIKKFY---KKFNIKQISETGVL 631
++++L+ +TD+ F + +S +T E + I+ I + K+F+ +K+ +++I G
Sbjct: 85 VLLDLLEVTDN---FERALESARTAEDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEE 141
Query: 632 FNPDIHEAI 640
F+P HEA+
Sbjct: 142 FDPHRHEAM 150
|
Length = 194 |
| >gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 35/162 (21%)
Query: 767 TAETFLNEKIEKA----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
E L I+K VI VP+ + +R+A +++ AG + +I EP AA
Sbjct: 77 VTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAA 136
Query: 817 ALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 875
A+ GL +P ++V D+GGGT +++VI + + V S + +GG+ FD
Sbjct: 137 AIGAGLPVTEPTGSMVV--DIGGGTTEVAVISLGGI-------VYSKS--VRVGGDKFDE 185
Query: 876 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 917
IIN++ + + L G+ AE+ KIE+ +A
Sbjct: 186 AIINYVRRNYNL-----LIGER--------TAERIKIEIGSA 214
|
Length = 334 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP--DEAVAVGASVQA-GVLSG-VVKD 389
K +EI L+GG + P ++++++ EV + P +EA A+GA++QA L+G D
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEV---VVPDTEEAAALGAAIQAAWCLTGEDGAD 450
Query: 390 VLLLDVT 396
V L ++
Sbjct: 451 VALAELC 457
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP--DEAVAVGASVQA-GVLSG-VVKD 1029
K +EI L+GG + P ++++++ EV + P +EA A+GA++QA L+G D
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEV---VVPDTEEAAALGAAIQAAWCLTGEDGAD 450
Query: 1030 VLLLDVT 1036
V L ++
Sbjct: 451 VALAELC 457
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1242 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| KOG0102|consensus | 640 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| KOG0103|consensus | 727 | 100.0 | ||
| KOG0104|consensus | 902 | 100.0 | ||
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.98 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.97 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.96 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.95 | |
| PRK14148 | 195 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.94 | |
| PRK14147 | 172 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14153 | 194 | heat shock protein GrpE; Provisional | 99.94 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.94 | |
| PRK14145 | 196 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14161 | 178 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14139 | 185 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14159 | 176 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14151 | 176 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14162 | 194 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14155 | 208 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK14141 | 209 | heat shock protein GrpE; Provisional | 99.94 | |
| PRK10325 | 197 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14158 | 194 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14163 | 214 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14140 | 191 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14150 | 193 | heat shock protein GrpE; Provisional | 99.93 | |
| COG0576 | 193 | GrpE Molecular chaperone GrpE (heat shock protein) | 99.93 | |
| PRK14144 | 199 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14146 | 215 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14160 | 211 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14154 | 208 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14149 | 191 | heat shock protein GrpE; Provisional | 99.93 | |
| PRK14143 | 238 | heat shock protein GrpE; Provisional | 99.92 | |
| PRK14157 | 227 | heat shock protein GrpE; Provisional | 99.92 | |
| PRK14156 | 177 | heat shock protein GrpE; Provisional | 99.91 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.91 | |
| PRK14142 | 223 | heat shock protein GrpE; Provisional | 99.91 | |
| PRK14164 | 218 | heat shock protein GrpE; Provisional | 99.89 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.87 | |
| KOG3003|consensus | 236 | 99.87 | ||
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.85 | |
| cd00446 | 137 | GrpE GrpE is the adenine nucleotide exchange facto | 99.83 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.8 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.75 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.74 | |
| PF01025 | 165 | GrpE: GrpE; InterPro: IPR000740 Molecular chaperon | 99.73 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.68 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.62 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.57 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.56 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.52 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.45 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.45 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.41 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.39 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.38 | |
| PTZ00452 | 375 | actin; Provisional | 99.37 | |
| PTZ00281 | 376 | actin; Provisional | 99.34 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.3 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.28 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.25 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.2 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.16 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.15 | |
| PTZ00452 | 375 | actin; Provisional | 99.15 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.14 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.06 | |
| PTZ00281 | 376 | actin; Provisional | 99.04 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.01 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.97 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.95 | |
| KOG0679|consensus | 426 | 98.86 | ||
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.83 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.75 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.66 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.64 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.61 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.57 | |
| KOG0679|consensus | 426 | 98.57 | ||
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.47 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.44 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.26 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.25 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.25 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.18 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.16 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.09 | |
| KOG0676|consensus | 372 | 98.01 | ||
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.0 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.79 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.79 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 97.7 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.65 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.62 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.54 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.36 | |
| PRK15027 | 484 | xylulokinase; Provisional | 97.3 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.24 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 97.23 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.23 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.23 | |
| KOG0797|consensus | 618 | 97.02 | ||
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 96.98 | |
| KOG0676|consensus | 372 | 96.97 | ||
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.97 | |
| KOG0677|consensus | 389 | 96.91 | ||
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 96.78 | |
| KOG0797|consensus | 618 | 96.78 | ||
| PRK10331 | 470 | L-fuculokinase; Provisional | 96.73 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.62 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.61 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 96.51 | |
| PRK15027 | 484 | xylulokinase; Provisional | 96.49 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.42 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 96.39 | |
| KOG0677|consensus | 389 | 96.36 | ||
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 96.3 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 96.22 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.2 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 96.11 | |
| KOG0680|consensus | 400 | 95.96 | ||
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.81 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 95.71 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 95.69 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 95.67 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 95.45 | |
| PLN02669 | 556 | xylulokinase | 95.41 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 95.19 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 95.18 | |
| PLN02295 | 512 | glycerol kinase | 95.02 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 94.98 | |
| PLN02669 | 556 | xylulokinase | 94.89 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 94.87 | |
| PRK04123 | 548 | ribulokinase; Provisional | 94.77 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 94.77 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.62 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 94.57 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 94.21 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 94.15 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 94.05 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 94.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 93.97 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 93.8 | |
| PRK04123 | 548 | ribulokinase; Provisional | 93.78 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 93.74 | |
| KOG2517|consensus | 516 | 93.59 | ||
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 93.52 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 93.5 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 93.37 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 93.33 | |
| PLN02295 | 512 | glycerol kinase | 93.21 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 93.03 | |
| KOG2531|consensus | 545 | 92.97 | ||
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 92.8 | |
| KOG2517|consensus | 516 | 92.64 | ||
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 92.5 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 92.49 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 92.32 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 92.01 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 91.73 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 91.68 | |
| KOG0680|consensus | 400 | 91.55 | ||
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 91.42 | |
| KOG2531|consensus | 545 | 91.38 | ||
| KOG0681|consensus | 645 | 90.05 | ||
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 89.45 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 89.23 | |
| PF13941 | 457 | MutL: MutL protein | 88.91 | |
| KOG0681|consensus | 645 | 88.57 | ||
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 88.44 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 86.13 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 85.41 | |
| PRK09604 | 332 | UGMP family protein; Validated | 84.66 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 83.57 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 83.17 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 82.66 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 81.74 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 80.69 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 80.51 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-126 Score=992.29 Aligned_cols=591 Identities=51% Similarity=0.796 Sum_probs=568.5
Q ss_pred ccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCCh
Q psy5911 642 IYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 721 (1242)
Q Consensus 642 ~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~ 721 (1242)
+..++|||+||+++||+|+.+|++++|.|++|+|.+||+|+|+++ ++++|++|++++..||+||+++.||||||.++|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 445899999999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred hHHhhcccCceEEEEcCCCCeEEE--Ec---CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 722 IVQKDIKMVPYKIVAADNGDAWVE--VK---DQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATK 796 (1242)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~ 796 (1242)
.+|++++.|||+++. .++++.+. +. .+.|+|+++++|+|.++++.|+.|+|.++.++|+||||||++.||++++
T Consensus 114 ~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999999884 34455554 44 2589999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHH
Q psy5911 797 DAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 876 (1242)
Q Consensus 797 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~ 876 (1242)
+|..+|||+++|+||||+|||++||+++...++++||||+||||||||++.+++ +.|+|+++.||.+|||+|||.+
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdn----GVFeVlaTnGDThLGGEDFD~r 268 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQR 268 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcC----ceEEEEecCCCcccCccchHHH
Confidence 999999999999999999999999999998999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHH
Q psy5911 877 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISK 956 (1242)
Q Consensus 877 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~ 956 (1242)
.++|+.+-|+++++.|++.+.+++++|+++||+||+.||++.++.+.++++.++. +|+-++||+.||++..++|.+
T Consensus 269 vm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~----DfSEtLtRAkFEElNmDLFr~ 344 (663)
T KOG0100|consen 269 VMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGV----DFSETLTRAKFEELNMDLFRK 344 (663)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccc----cccchhhhhHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764 499999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhh-cccccccCCcchhhhhhHHHhhhhhccc--ccceEEe
Q psy5911 957 SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLL 1033 (1242)
Q Consensus 957 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~v~~~~~p~~aVa~GAa~~a~~l~~~--~~~~~~~ 1033 (1242)
++.+++++|+++++.+++|+.|+|||||+|||.||++|+++| |+++.+.+||+||||+|||.+|+.+||. ..++++.
T Consensus 345 TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLL 424 (663)
T KOG0100|consen 345 TLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLL 424 (663)
T ss_pred hhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEE
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999994 5689999
Q ss_pred ecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEE
Q psy5911 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQI 1113 (1242)
Q Consensus 1034 ~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i 1113 (1242)
|++|+++||++.+|.|..+||||+.||+++++.|+|..|+|+.+.|++|+||+++..+|+.||.|.|+||||+|+|.|+|
T Consensus 425 Dv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqI 504 (663)
T KOG0100|consen 425 DVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQI 504 (663)
T ss_pred eeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeeEEEEEEecCCCceEEEEEccCC-CCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhh
Q psy5911 1114 EVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLK 1192 (1242)
Q Consensus 1114 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~ 1192 (1242)
+|||++|.||+|+|+|.++.+|+..+++|.++. +|++++|++|+++++++.++|+..+++.++||+||+|.|++++.+.
T Consensus 505 EVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~ 584 (663)
T KOG0100|consen 505 EVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIG 584 (663)
T ss_pred EEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999885 5999999999999999999999999999999999999999999994
Q ss_pred ---hccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1193 ---DENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1193 ---~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
.....+++++++.+..++++..+||+++ +.++|++++++|+.+|.||+++
T Consensus 585 dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~Piisk 640 (663)
T KOG0100|consen 585 DKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISK 640 (663)
T ss_pred chhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999987 6899999999999999999863
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-120 Score=951.08 Aligned_cols=575 Identities=51% Similarity=0.799 Sum_probs=550.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|..|||||||||||||+++++|+++||.|.+|+|.+||+|+|+++ ++++|++|+++...||+||+++.|||||++|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 678999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEE--c---CeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEV--K---DKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATK 156 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~ 156 (1242)
.+|++.++|||+++.. ++.+++++ + .+.|+|+++++|+|.++++.|+.|+|.++.++|+||||||++.||++++
T Consensus 114 ~vq~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 9999999999999854 44555554 4 3679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 157 DAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
+|..+|||+++|+||||+|||++|++++...++++||||+||||||||++.+++ +.|+|+++.||.+|||+|||++
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdn----GVFeVlaTnGDThLGGEDFD~r 268 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQR 268 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcC----ceEEEEecCCCcccCccchHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHH
Q psy5911 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISK 316 (1242)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~ 316 (1242)
+++|+.+-|+++++.|++.+.+++++|+++||++|+.||+..++.++++++.++ .+|+-++||..||++..++|.+
T Consensus 269 vm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~ 344 (663)
T KOG0100|consen 269 VMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRK 344 (663)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 6799999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc-ccccccCCCcchhhHhHHHHhhhhhcC--CccceEEE
Q psy5911 317 SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLLL 393 (1242)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~l~~--~~~~~~~~ 393 (1242)
++.+++++|+++++.+.+|+.|+|||||+|||.||++|+++| |+++...+||+||||+|||++|+.+|| ...++++.
T Consensus 345 TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLL 424 (663)
T KOG0100|consen 345 TLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLL 424 (663)
T ss_pred hhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEE
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999 46789999
Q ss_pred eeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEE
Q psy5911 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQI 473 (1242)
Q Consensus 394 d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i 473 (1242)
|++|+++||++-+|.|..+|||||.||+++++.|+++.|||+.+.|++|+|||.+..+|+.||+|.++|+||+|+|.|+|
T Consensus 425 Dv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqI 504 (663)
T KOG0100|consen 425 DVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQI 504 (663)
T ss_pred eeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhH
Q psy5911 474 EVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFV 552 (1242)
Q Consensus 474 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~ 552 (1242)
+|+|++|.||+|+|+|.|+.+|+..+++|+++ ..|++|++++|+.++++++++|+..+++.+.+|++ +.|.+.+
T Consensus 505 EVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~L-----E~Yaysl 579 (663)
T KOG0100|consen 505 EVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNEL-----ESYAYSL 579 (663)
T ss_pred EEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH-----HHHHHHh
Confidence 99999999999999999999999999999987 56999999999999999999999999999999999 6677777
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy5911 553 LETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMF 591 (1242)
Q Consensus 553 a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a 591 (1242)
...-+.+..+...+++..|..+++.+++.+.||+.-+.|
T Consensus 580 Knqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a 618 (663)
T KOG0100|consen 580 KNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDA 618 (663)
T ss_pred hhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccc
Confidence 777777777888888888999999999999999855444
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-97 Score=901.17 Aligned_cols=591 Identities=54% Similarity=0.856 Sum_probs=562.3
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
.++|||+||+++++++++.|++++++|..|.+.+||+|+|.++ .+++|..|+.+...+|.++++++||+||+.+.++.+
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 3789999999999999999999999999999999999999865 689999999999999999999999999999999999
Q ss_pred HhhcccCceEEEEcCCCCeEEEE-cCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEV-KDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
+...+.|||.++...++...+.. .++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~A 186 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIA 186 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHc
Confidence 99999999999988888887776 36789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
||+++++++||+|||++|+.... .+++++|||+||||||+|++++.+ +.++++++.|+.+|||+|||.+|++|+.
T Consensus 187 Gl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~----g~~~V~at~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 187 GLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred CCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeC----CEEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 99999999999999999998764 568999999999999999999987 8999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.++..++.+.|||++|+++++|+++++..+++
T Consensus 262 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~ 341 (657)
T PTZ00186 262 EEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCK 341 (657)
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999988766555556789999999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
++|+++++++.+|+.|+||||+||||.|+++|+++||.++....||++|||+|||++|+++++..+++.+.|++|++|||
T Consensus 342 ~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi 421 (657)
T PTZ00186 342 QCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGI 421 (657)
T ss_pred HHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999988899999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.++.|.+|||||++||+++++.|++..|||+.+.|+||||++..+.+|..||+|.|.++||.|+|.++|+|+|++|.|
T Consensus 422 e~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~n 501 (657)
T PTZ00186 422 ETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDAN 501 (657)
T ss_pred eecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.++.||++.++.|..+.+|+++++++|+++++++..+|+..++..+++|+++.+++.+++.+++. ..+++++
T Consensus 502 GiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 580 (657)
T PTZ00186 502 GICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAE 580 (657)
T ss_pred CEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHH
Confidence 999999999999999999999888899999999999999999999999999999999999999999999653 4689999
Q ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGD--DIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~--~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
++.+...++.+++||.++ +.+.+++++++|++.+.+++.
T Consensus 581 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 621 (657)
T PTZ00186 581 KENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGR 621 (657)
T ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 459999999999999988764
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=906.10 Aligned_cols=592 Identities=54% Similarity=0.842 Sum_probs=563.8
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
.++|||+||+|++++++++|.+.+++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+.+.++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 4789999999999999999999999999999999999999877789999999999999999999999999999998864
Q ss_pred HhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 803 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AG 803 (1242)
...+++||.++...++.+.+.+.+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 160 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAG 160 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 3567899999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHH
Q psy5911 804 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883 (1242)
Q Consensus 804 l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 883 (1242)
|+++++++||+|||++|+......++++||||+||||||+|++++.+ +.++++++.|+.+|||++||..|++|+.+
T Consensus 161 l~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~----~~~~V~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 161 LEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGD----GVFEVKATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred CCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeC----CEEEEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999987665678899999999999999999987 89999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 963 (1242)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 963 (1242)
+|+.+++.++..+++++.+|+.+||++|+.||....+.+.++++..+..++.++.+.|||++|++++.|+++++..+|++
T Consensus 237 ~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~ 316 (653)
T PRK13411 237 NFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQ 316 (653)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888899999999999999999999999999999887655545677899999999999999999999999999
Q ss_pred HHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc-ccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 964 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 964 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
+|+++++.+.+|+.|+||||+||||+|++.|+++|+ .++..++||++|||+|||++|+++++..+++.+.|++|++||+
T Consensus 317 ~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi 396 (653)
T PRK13411 317 ALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGI 396 (653)
T ss_pred HHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeE
Confidence 999999999999999999999999999999999996 6788899999999999999999999888999999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.++.|.+|||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.+.++|+.|.|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 476 (653)
T PRK13411 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVN 476 (653)
T ss_pred EecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.+..+|++..+.+....+|++++++++++++.++.++|+..+++.+++|+||+|+|.+++.|+++..++++++
T Consensus 477 Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~e 556 (653)
T PRK13411 477 GILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEEL 556 (653)
T ss_pred CeEEEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999977778999999
Q ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGD--DIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~--~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
|+++...++++++||+++ +.+++++++++|++.+.+++.
T Consensus 557 r~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~ 597 (653)
T PRK13411 557 KQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGA 597 (653)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 489999999999999999875
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-97 Score=906.61 Aligned_cols=593 Identities=60% Similarity=0.929 Sum_probs=569.6
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
+++|||+||+|+++++++.|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+.++|+.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 47899999999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred HhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 803 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AG 803 (1242)
+...+.+||.++..+++...+.+++..++|+++++++|++|++.++.++|.++.++|||||+||++.||++|++||++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 201 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAG 201 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHH
Q psy5911 804 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883 (1242)
Q Consensus 804 l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 883 (1242)
|+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.++||++||..|++|+.+
T Consensus 202 l~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~----g~~~v~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 202 LDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred CceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecC----CeeEEEecccCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999998754 567899999999999999999976 88999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 963 (1242)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 963 (1242)
+|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..++.++.++|||++|+++|+|++.++.+++++
T Consensus 277 ~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~ 356 (663)
T PTZ00400 277 EFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEK 356 (663)
T ss_pred HhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999899999887766556678999999999999999999999999999
Q ss_pred HHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeEE
Q psy5911 964 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIE 1043 (1242)
Q Consensus 964 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi~ 1043 (1242)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+||+++||+|||++|+++++..+++.+.|++|++||++
T Consensus 357 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~ 436 (663)
T PTZ00400 357 CIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIE 436 (663)
T ss_pred HHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEE
Confidence 99999999999999999999999999999999999998999999999999999999999999888999999999999999
Q ss_pred EeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCCe
Q psy5911 1044 TMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 1123 (1242)
Q Consensus 1044 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g 1123 (1242)
+.+|.|.++||+|++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.+.++|+.|.|.++|+|+|++|.||
T Consensus 437 ~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~G 516 (663)
T PTZ00400 437 TLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANG 516 (663)
T ss_pred ecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHHH
Q psy5911 1124 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEK 1203 (1242)
Q Consensus 1124 ~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~~ 1203 (1242)
+|+|++.+..+|++.++.|....+|++++++++++++.++.++|+..+++.+++|+||+|+|.+++.|+++...++++++
T Consensus 517 il~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~er 596 (663)
T PTZ00400 517 IMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADK 596 (663)
T ss_pred CEEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999999999999768889999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1204 ESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1204 ~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
+++.+.++++++||++++.+++++++++|++.+.+++.
T Consensus 597 e~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~ 634 (663)
T PTZ00400 597 DELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQ 634 (663)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-96 Score=898.64 Aligned_cols=591 Identities=50% Similarity=0.817 Sum_probs=557.9
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|||+||++|+++++++|++.++.|..|.+.+||+|+|.+++++++|..|+.++..+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 357899999999999999999999999999999999999998777899999999999999999999999999999865
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEc--CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVK--DQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
++...+.+||.+...++|.+.+.+. ++.++|+++++++|++|++.++.++|.++.++|||||+||++.||++|++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 159 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR 159 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 4556788999999988888888763 57899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 880 (1242)
+|||+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.+|||++||..|++|
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~----g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcC----CeEEEEEeecCCCCChhHHHHHHHHH
Confidence 9999999999999999999998764 567899999999999999999987 89999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHH
Q psy5911 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP 960 (1242)
Q Consensus 881 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~ 960 (1242)
+.++|..+++.++..+++++.+|+.+||++|+.||....+.+.++++..+.++..++.+.|||++|+++|.|+++++..+
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~ 314 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRP 314 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999999999999988766666678899999999999999999999999
Q ss_pred HHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeeccccee
Q psy5911 961 CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTL 1040 (1242)
Q Consensus 961 i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~ 1040 (1242)
|+++|+++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++|
T Consensus 315 i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~sl 394 (668)
T PRK13410 315 VKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSL 394 (668)
T ss_pred HHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccc
Confidence 99999999999999999999999999999999999999998999999999999999999999999889999999999999
Q ss_pred eEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEc
Q psy5911 1041 GIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 1120 (1242)
Q Consensus 1041 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d 1120 (1242)
|+++.+|.+.++||+|++||++++.+|++..|||+.+.|++|||++..+.+|..||+|.|.++||.|.|.++|+|+|++|
T Consensus 395 gie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id 474 (668)
T PRK13410 395 GLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDID 474 (668)
T ss_pred cceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhh----ccC
Q psy5911 1121 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKD----ENT 1196 (1242)
Q Consensus 1121 ~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~----~~~ 1196 (1242)
.||+|+|++.+..||++.+++|....+|+++|++++++++.++.++|+..+++.+++|++|+|+|.++++|.+ +..
T Consensus 475 ~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~ 554 (668)
T PRK13410 475 ANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGP 554 (668)
T ss_pred CCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999877789999999999999999999999999999999999999999999953 568
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy5911 1197 KITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENII 1240 (1242)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~ 1240 (1242)
++++++|+++...++++++||+.++.+.+++++++|.+.+.++.
T Consensus 555 ~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~ 598 (668)
T PRK13410 555 YFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLN 598 (668)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999888777777777777666654
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-98 Score=817.91 Aligned_cols=573 Identities=61% Similarity=0.915 Sum_probs=544.8
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
..|+|||+||||||+|++.++.+.++.|.+|.|.+||+|+|+.++.+++|..|+.+...||.|+++.-||+||++|.|+.
T Consensus 27 ~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~e 106 (640)
T KOG0102|consen 27 GKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPE 106 (640)
T ss_pred CceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHH
Confidence 35999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 162 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~A 162 (1242)
++.+.+..||+++...++..+++..|+.++|.++.+++|.+++++|+.+++..+..+|+||||||++.||+++++|.++|
T Consensus 107 vq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~ia 186 (640)
T KOG0102|consen 107 VQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIA 186 (640)
T ss_pred HHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHH
Q psy5911 163 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242 (1242)
Q Consensus 163 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~ 242 (1242)
|+++++++|||+|||++|+++.+. +..++|||+||||||++++.+.+ +.|++.++.||.++||+|||..+++|+.
T Consensus 187 gl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~----gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 187 GLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIED----GVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred cceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhcc----ceeEEEeccCccccChhHHHHHHHHHHH
Confidence 999999999999999999999886 88999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 322 (1242)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 322 (1242)
.+|++..++|+..+..+++||++++|++|+.||+...+.+.+|++..+..|+..+++++||.+||+++.+++++.+++++
T Consensus 262 ~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~ 341 (640)
T KOG0102|consen 262 SEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCK 341 (640)
T ss_pred HhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeEE
Q psy5911 323 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 402 (1242)
Q Consensus 323 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sigi 402 (1242)
++|++|++...+|+.|+||||.+|+|.+++.+++.||.......||+++||.|||++++.+++.+++.++.||+|+++||
T Consensus 342 ~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgi 421 (640)
T KOG0102|consen 342 KALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGI 421 (640)
T ss_pred HHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecCC
Q psy5911 403 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482 (1242)
Q Consensus 403 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~ 482 (1242)
++.+|.|..|||||++||+++++.|+++.|+|+.+.|.++||++.+..+|.++|+|.+.++||.|+|.|+|+|+|++|.|
T Consensus 422 etlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdan 501 (640)
T KOG0102|consen 422 ETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDAN 501 (640)
T ss_pred HhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhccchhh
Q psy5911 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYD 562 (1242)
Q Consensus 483 g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~ 562 (1242)
|+++|+|.|+.+||.++++|..+++|++++++.|+.+++.+...|...++..+..+.++.. +-+.++..++.
T Consensus 502 GI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~--------~~~te~~~~~~ 573 (640)
T KOG0102|consen 502 GIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSI--------IYDTEKSLKEF 573 (640)
T ss_pred ceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhhe--------ecCchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988888887433 33444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhh
Q psy5911 563 EDKIRKLKEIVIENIIIELIPITDSM 588 (1242)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~ll~v~d~~ 588 (1242)
.........+.++..+.+|-..+.++
T Consensus 574 ~~~~~~~~~~~i~~~i~~l~~~~~~~ 599 (640)
T KOG0102|consen 574 EEKIPAEECEKLEEKISDLRELVANK 599 (640)
T ss_pred hhhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555556566665555544
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-98 Score=817.40 Aligned_cols=591 Identities=62% Similarity=0.913 Sum_probs=574.8
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|+|+||+|+|++++..+++.++.|..|.|.+||+|+|..++++++|..|+.+...||.|+++.-||+|||++.|+.++
T Consensus 29 vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq 108 (640)
T KOG0102|consen 29 VIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQ 108 (640)
T ss_pred eeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHH
Confidence 57999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 804 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl 804 (1242)
++++..||+++..++|..+++..|+.++|.++.+++|.+++++|+.+++.++..+|+||||||++.||+++++|.++||+
T Consensus 109 ~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl 188 (640)
T KOG0102|consen 109 KDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGL 188 (640)
T ss_pred HHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 805 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
++++++|||+|||++|+++... ++.++|||+||||||++++.+.+ +.+++.++.||.++||+|||..+++|+..+
T Consensus 189 ~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~----gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 189 NVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIED----GVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred eeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhcc----ceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9999999999999999999875 88999999999999999999998 999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy5911 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA 964 (1242)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~ 964 (1242)
|++..++++..+..+++||++++|++|+.||....+.+.+|++..+..|+.++++++||.+||+++.+++++.++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeEEE
Q psy5911 965 LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIET 1044 (1242)
Q Consensus 965 l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi~~ 1044 (1242)
|++|++..++|+.|+||||.+|+|.+++.+++.||..+....||+++||.|||++++.+++.++++.+.||+|+++||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCCee
Q psy5911 1045 MGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 1124 (1242)
Q Consensus 1045 ~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 1124 (1242)
.+|.|..+||||+.||+++++.|.+..|+|+.+.|.++|||+.+..+|..+|+|.+.|+||.|+|.|+|+|+|.+|.||+
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHHHH
Q psy5911 1125 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKE 1204 (1242)
Q Consensus 1125 l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~~~ 1204 (1242)
++|+|.++.|||.+++++..+.+|++.|++.|+++++++...|+..++..+..|..+++++.....+..+...++.++.+
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHh
Q psy5911 1205 SIEKSISNLELLIKG---DDIELIKKGNEDLLKISENII 1240 (1242)
Q Consensus 1205 ~~~~~~~~~~~wl~~---~~~~~~~~~~~~l~~~~~~~~ 1240 (1242)
+|...+.++.+.+.. .+.+.++.+...|+...-+++
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~ 622 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLF 622 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHH
Confidence 999999999998874 356777777777777666665
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-95 Score=880.62 Aligned_cols=543 Identities=57% Similarity=0.905 Sum_probs=513.1
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
+.+||||||||||+||++++|.+++++|..|.+.+||+|+|.++ .+++|..|+.+...+|.++++++||+||+++.++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 46999999999999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEecCCCCeEEEE-cCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEV-KDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
++...+.+||.++...++...+.. +++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 999999999999988888887775 4678999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||+++++++||+|||++|+.... .++++|||||||||||+|++++.+ +.++++++.|+.+|||+|||.+|++|+
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~----g~~~V~at~Gd~~LGG~DfD~~l~~~~ 260 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYI 260 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeC----CEEEEEEecCCCCCCchhHHHHHHHHH
Confidence 999999999999999999998654 568999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|+.+++.|+..+++++.+|+.+||++|+.||....+.+.++.+..+.++..++.+.|||++|+++++|+++++..++
T Consensus 261 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v 340 (657)
T PTZ00186 261 LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPC 340 (657)
T ss_pred HHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHH
Confidence 99999999989988999999999999999999999999999998876655555678999999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|+++++++.+|+.|+||||+||||.|+++|+++||.++....||++|||+|||++|+.+++..+++.+.|++|++||
T Consensus 341 ~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slg 420 (657)
T PTZ00186 341 KQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLG 420 (657)
T ss_pred HHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeecccccc
Confidence 99999999999999999999999999999999999999888899999999999999999999998889999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
|++.+|.+.+|||||++||+++++.|++..|||+.+.|+||||++..+.+|..||+|+|.++||.|+|.++|+|+|++|.
T Consensus 421 ie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~ 500 (657)
T PTZ00186 421 IETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDA 500 (657)
T ss_pred ceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFV 552 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~ 552 (1242)
||+|+|+|.++.||++.+++|..+.+|+++++++|.+++++++.+|...++..+++++++..+ ....+.+
T Consensus 501 nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~ 570 (657)
T PTZ00186 501 NGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQL-TTAERQL 570 (657)
T ss_pred CCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 999999999999999999999988889999999999999999999999999999999886665 3333333
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-95 Score=888.98 Aligned_cols=592 Identities=53% Similarity=0.810 Sum_probs=561.4
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|||+||++++++++++|.+.+++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 347899999999999999999999999999999999999998777899999999999999999999999999999876
Q ss_pred HHhhcccCceEEEEcCCCCeEEEE--cCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEV--KDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
++...+.+||.++..+++.+.+.+ .+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 196 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 456778899999988888887775 467899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 880 (1242)
+|||+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.+|||++||..|++|
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~----~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGD----GVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecC----CEEEEEEecCCCccCHHHHHHHHHHH
Confidence 9999999999999999999998764 567899999999999999999976 89999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHH
Q psy5911 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP 960 (1242)
Q Consensus 881 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~ 960 (1242)
+.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++++..+.++..++++.|||++|++++.|+++++..+
T Consensus 272 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~ 351 (673)
T PLN03184 272 LASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTP 351 (673)
T ss_pred HHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999999999998877655555567899999999999999999999999
Q ss_pred HHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeeccccee
Q psy5911 961 CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTL 1040 (1242)
Q Consensus 961 i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~ 1040 (1242)
|+++|+++++.+.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++|
T Consensus 352 i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~sl 431 (673)
T PLN03184 352 VENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSL 431 (673)
T ss_pred HHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999888999999999999
Q ss_pred eEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEc
Q psy5911 1041 GIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 1120 (1242)
Q Consensus 1041 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d 1120 (1242)
|+++.++.+.++||+|++||+++++.|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.|.|.++|+|+|++|
T Consensus 432 gi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 511 (673)
T PLN03184 432 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 511 (673)
T ss_pred eEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCH
Q psy5911 1121 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITD 1200 (1242)
Q Consensus 1121 ~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~ 1200 (1242)
.||+|+|++.+..++++.+++|....+|++++++++++++.++.++|+..+++.+++|+||+|+|.+++.|+++..++++
T Consensus 512 ~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~ 591 (673)
T PLN03184 512 ANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPA 591 (673)
T ss_pred CCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCH
Confidence 99999999999999999999998777899999999999999999999999999999999999999999999767789999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1201 EEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1201 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
++++++.+.++++++||++++.+.+++++++|.+.+.++..
T Consensus 592 eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 592 DVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888764
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-94 Score=890.71 Aligned_cols=592 Identities=66% Similarity=0.986 Sum_probs=566.4
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.+++|||+||++++++++++|.+++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 347899999999999999999999999999999999999998667899999999999999999999999999998 667
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
++...+.+||.++..+++...+.+++..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88888999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
||+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.++||++||.+|++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGD----GVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred CCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeC----CeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999998764 568899999999999999999987 8999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+.+|+.++.+.|||++|+++|+|+++++..+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 314 (627)
T PRK00290 235 DEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCK 314 (627)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999988776545567789999999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
++|+++++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++..+++.+.|++|++||+
T Consensus 315 ~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi 394 (627)
T PRK00290 315 QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGI 394 (627)
T ss_pred HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.++.+.+|||+|+++|++++++|++..|+|+.+.|.+|+|++..+.+|..||+|.|+++|+.|+|.++|+|+|++|.|
T Consensus 395 ~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~ 474 (627)
T PRK00290 395 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDAN 474 (627)
T ss_pred EecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.+..+|+..+++|....++++++++++++++.++.++|+..+++.+++|+||+|+|.++++|+++..++++++
T Consensus 475 gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e 554 (627)
T PRK00290 475 GIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADE 554 (627)
T ss_pred ceEEEEEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999999999999999887789999999999999999999999999999999999999999999976778999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
++++.+.++++++||+.++.+.+++++++|++.+.+++.
T Consensus 555 ~~~i~~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~ 593 (627)
T PRK00290 555 KEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGE 593 (627)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998999999999999999999875
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-96 Score=842.76 Aligned_cols=591 Identities=49% Similarity=0.769 Sum_probs=565.1
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|+|+||+++|++++++|+++++.|+.|++.+||+|+|.++ ++++|.+|..+...+|.++++++||++|+.++|+.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 45789999999999999999999999999999999999999976 78999999999999999999999999999999999
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEc----CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHH
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA 798 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~A 798 (1242)
++..+++|||.+....++.+.+.+. .+.++|+++++++|.++++.++.++|.++.++|+|||+||++.||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 9999999999999777767777764 258999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHccCCCC-CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHH
Q psy5911 799 GKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 877 (1242)
Q Consensus 799 a~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 877 (1242)
+.+|||+++++++||+|||++|++.+. ....++||+|+||||||+|++.+.. +.+.+.++.|+.++||++||+.|
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~g----G~~~vkat~gd~~lGGedf~~~l 241 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEG----GIFEVKATAGDTHLGGEDFDNKL 241 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEecc----chhhhhhhcccccccchhhhHHH
Confidence 999999999999999999999998765 4567899999999999999999987 78899999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 878 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 957 (1242)
Q Consensus 878 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~ 957 (1242)
++|+..+|+.+++.++..++++.++|+.+||.+|+.||+...+.+.++++..+.+ +...+||.+|+.++.+++.++
T Consensus 242 ~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d----~~~~itrarfe~l~~dlf~~~ 317 (620)
T KOG0101|consen 242 VNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITRARFEELNADLFRST 317 (620)
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcccc----ccceeehhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887654 888999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhh-cccccccCCcchhhhhhHHHhhhhhccc----ccceEE
Q psy5911 958 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSGV----VKDVLL 1032 (1242)
Q Consensus 958 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~v~~~~~p~~aVa~GAa~~a~~l~~~----~~~~~~ 1032 (1242)
+.++.++|+++++++.+|+.|+||||++|+|.+++.++++| ++.+..++||||+||+|||++||.+++. ..++.+
T Consensus 318 ~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~l 397 (620)
T KOG0101|consen 318 LEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLL 397 (620)
T ss_pred HHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceee
Confidence 99999999999999999999999999999999999999999 6788899999999999999999999983 478999
Q ss_pred eecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCE
Q psy5911 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 1112 (1242)
Q Consensus 1033 ~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~ 1112 (1242)
.|+.|+++||++.++.|.++|++|+++|++++++|++..|||+.+.|.||+||+.++++|..+|.|.|.+|||.|+|.++
T Consensus 398 id~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~ 477 (620)
T KOG0101|consen 398 IDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 477 (620)
T ss_pred eecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEecCCCceEEEEEccCC-CCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhh
Q psy5911 1113 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNL 1191 (1242)
Q Consensus 1113 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l 1191 (1242)
|+++|.+|.||+|+|++.++.|||..+++|.+.. .||+++|++|..++++++.+|...+++.+++|.||+|+|+++..+
T Consensus 478 IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~ 557 (620)
T KOG0101|consen 478 IEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATV 557 (620)
T ss_pred eeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhh
Confidence 9999999999999999999999999999999886 599999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1192 KDENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
++....++++++.++.+.++++.+||+.+ ..++|++|.++|+..|.|+|++
T Consensus 558 ~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~ 611 (620)
T KOG0101|consen 558 EDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISK 611 (620)
T ss_pred hhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHh
Confidence 87668999999999999999999999987 5789999999999999999974
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-93 Score=879.05 Aligned_cols=590 Identities=61% Similarity=0.931 Sum_probs=562.9
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||++++++++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+. .++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHH
Confidence 579999999999999999999999999999999999999977789999999999999999999999999999983 466
Q ss_pred hhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 804 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl 804 (1242)
...+.+||. +..+++.+.+.+++..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||++|||
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 158 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGL 158 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 778899999 6677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 805 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
+++++++||+|||++|+......++++||||+||||||+|++++.+ +.++++++.|+.++||++||..|++|+.++
T Consensus 159 ~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~----~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~ 234 (595)
T TIGR02350 159 EVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGD----GVFEVLSTAGDTHLGGDDFDQRIIDWLADE 234 (595)
T ss_pred ceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecC----CeEEEEEecCCcccCchhHHHHHHHHHHHH
Confidence 9999999999999999987645678999999999999999999986 899999999999999999999999999999
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy5911 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA 964 (1242)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~ 964 (1242)
|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+.+|+.++.+.|||++|+++++|+++++.++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~ 314 (595)
T TIGR02350 235 FKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQA 314 (595)
T ss_pred HHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999998877665556778999999999999999999999999999
Q ss_pred HHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeEEE
Q psy5911 965 LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIET 1044 (1242)
Q Consensus 965 l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi~~ 1044 (1242)
|+++++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||.|||++|+.+++..+++.+.|++|++||+++
T Consensus 315 l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~ 394 (595)
T TIGR02350 315 LKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIET 394 (595)
T ss_pred HHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEe
Confidence 99999999999999999999999999999999999889999999999999999999999998899999999999999999
Q ss_pred eCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCCee
Q psy5911 1045 MGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 1124 (1242)
Q Consensus 1045 ~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 1124 (1242)
.++.+.++||+|++||++++++|++..|+|+.+.|.+|+|++..+.+|..||++.++++|+.+.|.++|+|+|++|.||+
T Consensus 395 ~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~ 474 (595)
T TIGR02350 395 LGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGI 474 (595)
T ss_pred cCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHHHH
Q psy5911 1125 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKE 1204 (1242)
Q Consensus 1125 l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~~~ 1204 (1242)
|+|++.+..+|++.++++....++++++++++++++.++.++|+..+++.+++|+||+|+|.+++.|+++..++++++++
T Consensus 475 l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~ 554 (595)
T TIGR02350 475 LHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKE 554 (595)
T ss_pred EEEEEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999988778999999999999999999999999999999999999999999997667889999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1205 SIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1205 ~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
++...++++++||+.++..++++++++|++.+++++.
T Consensus 555 ~l~~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~ 591 (595)
T TIGR02350 555 KIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAE 591 (595)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-93 Score=875.30 Aligned_cols=591 Identities=58% Similarity=0.871 Sum_probs=560.2
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
.++|||+||++++++++++|.+.+++|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 47899999999999999999999999999999999999998777899999999999999999999999999999865 5
Q ss_pred HhhcccCceEEEEcCCCCeEEEE--cCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEV--KDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 801 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~ 801 (1242)
+...+.|||.++..+++.+.+.+ .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 160 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKI 160 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56667899999988888887765 4678999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHH
Q psy5911 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 881 (1242)
Q Consensus 802 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 881 (1242)
|||+++++++||+|||++|+.... .+..+||||+||||||+|++++.. +.++++++.|+.++||++||..|++|+
T Consensus 161 AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 161 AGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGD----GVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred cCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcC----CEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 999999999999999999998754 457899999999999999999976 889999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 882 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 961 (1242)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i 961 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++++..+.+++.++...|||++|++++.|+++++..+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999998776554455678899999999999999999999999
Q ss_pred HHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceee
Q psy5911 962 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 1041 (1242)
Q Consensus 962 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~g 1041 (1242)
+++|+++++.+.+|+.|+||||+||+|.|++.|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++||
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lg 395 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLG 395 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeee
Confidence 99999999999999999999999999999999999999989999999999999999999999998889999999999999
Q ss_pred EEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcC
Q psy5911 1042 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 1121 (1242)
Q Consensus 1042 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 1121 (1242)
++..++.+.+|||+|++||+++++.|++..++|+.+.|.+|||++..+.+|..||+|.+.++|+.+.|.++|+|+|++|.
T Consensus 396 i~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~ 475 (621)
T CHL00094 396 VETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDA 475 (621)
T ss_pred eeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHH
Q psy5911 1122 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDE 1201 (1242)
Q Consensus 1122 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~ 1201 (1242)
||+|+|++.+..||++.++.|....+|++++++++++++.++.++|+..+++.+++|.||+|+|.++++|+.+..+++++
T Consensus 476 ~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~ 555 (621)
T CHL00094 476 NGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEE 555 (621)
T ss_pred CCeEEEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHH
Confidence 99999999999999999999987778999999999999999999999999999999999999999999997677889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1202 EKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1202 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
+|+++...++++++||+.++.+.+++++++|++.+.+++.
T Consensus 556 ~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 595 (621)
T CHL00094 556 KKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGK 595 (621)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-92 Score=864.84 Aligned_cols=536 Identities=54% Similarity=0.899 Sum_probs=509.6
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|++|||||||||||+||++++|.+.+|.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 6789999999999999999999999999999999999999998777899999999999999999999999999999865
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEE--cCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEV--KDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 159 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa 159 (1242)
++...+.+||.+...+++.+.+.+ .++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 455667899999988888888776 35789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHH
Q psy5911 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239 (1242)
Q Consensus 160 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~ 239 (1242)
++|||+++++|+||+|||++|+.... .+.++||||+||||||+|++++.+ +.++++++.|+.+|||++||.+|++
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~----g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcC----CeEEEEEeecCCCCChhHHHHHHHH
Confidence 99999999999999999999998764 578899999999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHH
Q psy5911 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLK 319 (1242)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~ 319 (1242)
|+..+|..+++.++..+++++.+|+.+||++|+.||....+.+.++++..+.+++.++...|||++|+++|.|+++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999999988876655667889999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccce
Q psy5911 320 PCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLT 399 (1242)
Q Consensus 320 ~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~s 399 (1242)
+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++..+++.+.|++|++
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~s 393 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLS 393 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred eEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEe
Q psy5911 400 LGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDL 479 (1242)
Q Consensus 400 igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~ 479 (1242)
||+++.+|.+.+|||+|++||++++.+|++..|||+.+.|++|||++..+.+|..||+|.|.++|+.|+|.++|+|+|++
T Consensus 394 lgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~i 473 (668)
T PRK13410 394 LGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDI 473 (668)
T ss_pred ccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 480 DANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 480 d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|.||+|+|++.+..||++..++|....+|++++++++.++++++.++|...+++.+++|+++.++
T Consensus 474 d~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i 538 (668)
T PRK13410 474 DANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLI 538 (668)
T ss_pred CCCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877889999999999999999999999999999999997765
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-92 Score=870.84 Aligned_cols=590 Identities=48% Similarity=0.776 Sum_probs=553.8
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
+++|||+||+|++++++++|++++++|..|++.+||+|+|.++ .+++|..|+.+...+|.++++++||+||+.++++.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred cEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 4689999999999999999999999999999999999999865 689999999999999999999999999999999999
Q ss_pred HhhcccCceEEEEcCCCCeEEEEc--C--eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVK--D--QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
+...+.|||.++..+++...+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999888887766653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCCC-CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 878 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 878 (1242)
++|||+++++++||+|||++|+.... ..++++||||+||||||+|++++.. +.++++++.|+.+|||++||.+|+
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~----~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeC----CeEEEEEecCCCCCChHHHHHHHH
Confidence 99999999999999999999998654 2467899999999999999999987 889999999999999999999999
Q ss_pred HHHHHHhhhhc-CCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 879 NHLIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 957 (1242)
Q Consensus 879 ~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~ 957 (1242)
+|+.++|+.++ +.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .+++++|||++|+++|+|+++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~ 315 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNT 315 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHH
Confidence 99999998876 46777889999999999999999999999999999876654 45899999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc-ccccccCCcchhhhhhHHHhhhhhccc----ccceEE
Q psy5911 958 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGV----VKDVLL 1032 (1242)
Q Consensus 958 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~v~~~~~p~~aVa~GAa~~a~~l~~~----~~~~~~ 1032 (1242)
..+|+++|+++++++.+|+.|+||||+||||.|+++|+++|+ .++...+||++|||+|||++|+++++. .+++.+
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~ 395 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLL 395 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEE
Confidence 999999999999999999999999999999999999999996 578889999999999999999999873 568899
Q ss_pred eecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCE
Q psy5911 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 1112 (1242)
Q Consensus 1033 ~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~ 1112 (1242)
.|++|++||++..++.+.++||+|++||++++++|++..|+|+.+.|.+|||++....+|..||+|.+.++|+.++|.++
T Consensus 396 ~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~ 475 (653)
T PTZ00009 396 LDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQ 475 (653)
T ss_pred EeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred EEEEEEEcCCeeEEEEEEecCCCceEEEEEccC-CCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhh
Q psy5911 1113 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNL 1191 (1242)
Q Consensus 1113 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l 1191 (1242)
|+|+|++|.||+|+|++.+..+|+..++.|... ..+++++++++++++.++..+|+..+++.+++|+||+|+|.+|++|
T Consensus 476 i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L 555 (653)
T PTZ00009 476 IEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTL 555 (653)
T ss_pred EEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999988754 4699999999999999999999999999999999999999999999
Q ss_pred hh--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1192 KD--ENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1192 ~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
++ +..++++++++++...++++++||+++ +.++|++++++|++.++|++.|
T Consensus 556 ~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r 611 (653)
T PTZ00009 556 QDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTK 611 (653)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 63 778999999999999999999999976 5789999999999999999864
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-92 Score=857.65 Aligned_cols=579 Identities=42% Similarity=0.675 Sum_probs=545.1
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||+||+++++++|++++++|..|++.+||+|+|.+++.+++|..|+.+...+|.++++++|||||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 3689999999999999999999999999999999999998777899999999999999999999999999999877432
Q ss_pred hhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 804 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl 804 (1242)
.+.+||.++..+++.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999888888998888788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 805 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.+|||++||..|++|+.++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTK----GVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred CceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcC----CeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998765 567899999999999999999987 889999999999999999999999999976
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy5911 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA 964 (1242)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~ 964 (1242)
++ .+...++..+.+|+.+||++|+.||....+.+.++. .+.++.++|||++|+++++|+++++.++++++
T Consensus 233 ~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 233 LG----ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL------DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred hC----CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE------CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 444568889999999999999999999988888764 13568999999999999999999999999999
Q ss_pred HHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhccc--ccceEEeecccceeeE
Q psy5911 965 LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 965 l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~--~~~~~~~~~~~~~~gi 1042 (1242)
|+++++.+.+|+.|+||||+||||+|+++|++.|+.++..++||++|||+|||++|+.+++. .+++.+.|++|++||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999874 3578999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.+|.+.++||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.|.|.++|+|+|++|.|
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 462 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDAD 462 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.++.||++.++.|..+.++++++++++.+++.++..+|+..++..+++|++|+|++.+++.+.++...+++++
T Consensus 463 gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (599)
T TIGR01991 463 GLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDE 542 (599)
T ss_pred CeEEEEEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 99999999999999999999887789999999999999999999999999999999999999999999976667899999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
|+++...++++++||++++.+.++++.++|++.+.+++.
T Consensus 543 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 543 RAAIDAAMEALQKALQGDDADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-92 Score=862.48 Aligned_cols=537 Identities=58% Similarity=0.909 Sum_probs=510.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.+||||||||||+||++.+|.+.+|+|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 57899999999999999999999999999999999999999987778999999999999999999999999999999886
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
. ...+.+||.++...++.+.+.+.+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 158 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI 158 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHH
Confidence 4 34678999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||+++++++||+|||++|+......+.++|||||||||||+|++++.+ +.++++++.|+.+|||++||..|++|+
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~----~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGD----GVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeC----CEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999987665678899999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++++..+..++.++.+.|||++|+++++|+++++..+|
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 99999988889989999999999999999999999999999998876554455788999999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcc-cccccCCCcchhhHhHHHHhhhhhcCCccceEEEeecccee
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTL 400 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~si 400 (1242)
+++|+++++.+.+|+.|+||||+||+|+|+++|+++|+ .++..+.||++|||+|||++|+.+++..+++.+.|++|++|
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~sl 394 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSL 394 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeeccccee
Confidence 99999999999999999999999999999999999996 67888999999999999999999998888999999999999
Q ss_pred EEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEec
Q psy5911 401 GIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 480 (1242)
Q Consensus 401 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d 480 (1242)
|+++.++.|.+|||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|++|+|.++|+|+|++|
T Consensus 395 gi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 474 (653)
T PRK13411 395 GIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEID 474 (653)
T ss_pred eEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 481 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 481 ~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
.||+|+|++.+..+|++..+.+....+|++++++++.++++++.++|+..+++.+++|++++++
T Consensus 475 ~~Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~i 538 (653)
T PRK13411 475 VNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLL 538 (653)
T ss_pred CCCeEEEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877889999999999999999999999999999999997765
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-91 Score=859.65 Aligned_cols=537 Identities=64% Similarity=0.988 Sum_probs=514.3
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
+.+||||||||||+||++++|.+++++|..|++.+||+|+|.+++++++|..|+.+..++|.++++++||+||+++.++.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 46999999999999999999999999999999999999999877789999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 162 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~A 162 (1242)
++...+.+||.++..+++.+.+.++++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++||++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHH
Q psy5911 163 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242 (1242)
Q Consensus 163 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~ 242 (1242)
||+++++++||+|||++|+.... .++++|||||||||||+|++++.+ +.++++++.|+.+|||++||..|++|+.
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~----g~~~v~a~~gd~~LGG~d~D~~l~~~l~ 275 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLI 275 (663)
T ss_pred CCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecC----CeeEEEecccCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998654 578999999999999999999976 8899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 322 (1242)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 322 (1242)
.+|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+..++.++.++|||++|+++++|+++++.++++
T Consensus 276 ~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~ 355 (663)
T PTZ00400 276 AEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCE 355 (663)
T ss_pred HHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999989999887776655667899999999999999999999999999
Q ss_pred HHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeEE
Q psy5911 323 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 402 (1242)
Q Consensus 323 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sigi 402 (1242)
++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++....||+++||+|||++|+.+++..+++.+.|++|++||+
T Consensus 356 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi 435 (663)
T PTZ00400 356 KCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGI 435 (663)
T ss_pred HHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecCC
Q psy5911 403 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482 (1242)
Q Consensus 403 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~ 482 (1242)
++.+|.+.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.|
T Consensus 436 ~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 515 (663)
T PTZ00400 436 ETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDAN 515 (663)
T ss_pred EecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 483 g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|+|+|++.+..+|++..+.|....+|++++++++.+++++++++|+..+++.+++|+++.++
T Consensus 516 Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~i 577 (663)
T PTZ00400 516 GIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLI 577 (663)
T ss_pred CCEEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877889999999999999999999999999999999997764
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-91 Score=849.26 Aligned_cols=575 Identities=41% Similarity=0.682 Sum_probs=539.9
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||++|+++++++|++++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++++|||||+.+.+ ++
T Consensus 21 ~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 21 AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred EEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 689999999999999999999999999999999999999876 489999999999999999999999999999876 34
Q ss_pred hhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 804 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl 804 (1242)
...+.+||.+...++|.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++|||
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl 177 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGL 177 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 45677899998888888888887778999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 805 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
+++++++||+|||++|+.... .+++++|||+||||||+|++++.. +.++++++.|+.+|||++||..|++|+.++
T Consensus 178 ~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~----~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 178 NVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSK----GVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred CeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeC----CEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999998764 467899999999999999999987 889999999999999999999999999988
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy5911 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA 964 (1242)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~ 964 (1242)
|+. +...+++.+.+|+.+||++|+.||....+.+.++. +...|||++|++++.|+++++..+++++
T Consensus 253 ~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 253 AGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL----------WQGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred cCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec----------CCCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 33467889999999999999999999888887742 1124999999999999999999999999
Q ss_pred HHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhccc--ccceEEeecccceeeE
Q psy5911 965 LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 965 l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~--~~~~~~~~~~~~~~gi 1042 (1242)
|+++++.+.+|+.|+||||+||||.|++.|+++||.++..+.||++|||+|||++|+.+++. .+++.+.|++|++||+
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999888889999999999999999999875 4589999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.+|.+.++||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|.|
T Consensus 399 ~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~ 478 (616)
T PRK05183 399 ETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDAD 478 (616)
T ss_pred eecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.++.+|++.++.|..+.++++++++++++++.++..+|+..+++.+++|++|.|++.+++.+++....+++++
T Consensus 479 Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 558 (616)
T PRK05183 479 GLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAE 558 (616)
T ss_pred CeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999976667899999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
|+++...++++++||.+++.+.+++++++|++.+.+++.
T Consensus 559 ~~~~~~~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~ 597 (616)
T PRK05183 559 RAAIDAAMAALREVAQGDDADAIEAAIKALDKATQEFAA 597 (616)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-90 Score=847.12 Aligned_cols=537 Identities=56% Similarity=0.875 Sum_probs=508.6
Q ss_pred CCCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCC
Q psy5911 1 QYCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 80 (1242)
Q Consensus 1 q~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 80 (1242)
|++.|||||||||||+||++.+|.+.+++|..|++.+||+|+|.+++.+++|..|+.+...+|.++++++|||||+++.+
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 57789999999999999999999999999999999999999998777899999999999999999999999999999876
Q ss_pred hHHHHHhccCCeEEEecCCCCeEEEE--cCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHH
Q psy5911 81 EIVQTVLKMVPYKIVAADNGDAWVEV--KDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA 158 (1242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~A 158 (1242)
++...+.+||.++..+++.+.+.+ .++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|
T Consensus 117 --~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 --VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred --hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 456678899999988888887765 4688999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHH
Q psy5911 159 GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 238 (1242)
Q Consensus 159 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~ 238 (1242)
|++|||+++++++||+|||++|+.... .+.++|||||||||||+|++++.+ +.++++++.|+.+|||++||+.|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~----~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGD----GVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecC----CEEEEEEecCCCccCHHHHHHHHH
Confidence 999999999999999999999998764 567899999999999999999976 899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHH
Q psy5911 239 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSL 318 (1242)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~ 318 (1242)
+|+..+|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++....+++.++++.|||++|++++.|+++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999999999888766544455678999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccc
Q psy5911 319 KPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPL 398 (1242)
Q Consensus 319 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~ 398 (1242)
.+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||.++...+||+++||+|||++|+.+++..+++.+.|++|+
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~ 429 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPL 429 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccc
Confidence 99999999999999999999999999999999999999999988899999999999999999999998889999999999
Q ss_pred eeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEE
Q psy5911 399 TLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFD 478 (1242)
Q Consensus 399 sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~ 478 (1242)
+||+++.++.+.+|||+|++||++++++|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.++|.++|+|+|+
T Consensus 430 slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 509 (673)
T PLN03184 430 SLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 509 (673)
T ss_pred cceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 479 LDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 479 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
+|.||+|+|++.+..+|++..++|..+.+|++++++++.++.++++.+|+..+++.+++|++++++
T Consensus 510 id~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~i 575 (673)
T PLN03184 510 IDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVV 575 (673)
T ss_pred eCCCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999877889999999999999999999999999999999997665
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-89 Score=844.15 Aligned_cols=536 Identities=69% Similarity=1.045 Sum_probs=511.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+++||||||||||++|++++|.+++++|..|++.+||+|+|..++.+++|..|+.+..++|.++++++||+||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 6789999999999999999999999999999999999999998667899999999999999999999999999998 56
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.++...+.+||.++...++...+.++++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||++|++||++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 158 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 158 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 78888899999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||++++|++||+|||++|+.... .++++|||||||||||+|++++.+ +.++++++.|+.++||.+||.+|++|+
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~~~ 233 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGD----GVFEVLSTNGDTHLGGDDFDQRIIDYL 233 (627)
T ss_pred cCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeC----CeEEEEEecCCCCcChHHHHHHHHHHH
Confidence 999999999999999999998764 578999999999999999999977 899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.+.|||++|+++|+|+++++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 313 (627)
T PRK00290 234 ADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPC 313 (627)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 99999999989988999999999999999999999999999998876654455788999999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|+.+++.+.+|+.|+||||+||+|+|++.|+++||.++..+.||++|||+|||++|+.+++..+++.+.|++|++||
T Consensus 314 ~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slg 393 (627)
T PRK00290 314 KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLG 393 (627)
T ss_pred HHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.++.+.+|||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.++|.++|+|+|++|.
T Consensus 394 i~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~ 473 (627)
T PRK00290 394 IETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDA 473 (627)
T ss_pred EEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
||+|+|++.+..+|+..+++|....+|++++++++.+++.++.++|+..++..+++|+++.++
T Consensus 474 ~gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i 536 (627)
T PRK00290 474 NGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLI 536 (627)
T ss_pred CceEEEEEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999887889999999999999999999999999999999997764
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-90 Score=791.58 Aligned_cols=573 Identities=51% Similarity=0.778 Sum_probs=531.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
++.++|||||||+||++++.+|.++++.|.+|++.+||+|+|.++ +.++|.+|..+...+|.++++++||++|+.++++
T Consensus 6 ~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred ccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 457899999999999999999999999999999999999999975 7889999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEc----CeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
.++.+.++|||.+....++.+.+.+. .+.++|+++++++|.++++.++.+++..+.++|+|||+||++.||+++.+
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~ 164 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKD 164 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHH
Confidence 99999999999999777767777764 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCC-CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
|+.+|||+++++|+||+|||++|++.+. ....+|||||+||||||+|++.+.. +.+.+.++.|+.++||++||+.
T Consensus 165 A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~g----G~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 165 AALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEG----GIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred HHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEecc----chhhhhhhcccccccchhhhHH
Confidence 9999999999999999999999998765 4578899999999999999999987 7889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHH
Q psy5911 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISK 316 (1242)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~ 316 (1242)
|++|+..+|+.+++.++..+.+++.+|+.+||.+|+.||+...+.+.++++.++ .++...|||.+|+.++.+++.+
T Consensus 241 l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~ 316 (620)
T KOG0101|consen 241 LVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRS 316 (620)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 5688999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc-ccccccCCCcchhhHhHHHHhhhhhcC----CccceE
Q psy5911 317 SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSG----VVKDVL 391 (1242)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~l~~----~~~~~~ 391 (1242)
+..++.++|+++++++.+|+.|+||||++|+|.+|..++++| ++.+..++||+++||+|||++||.+++ ...+++
T Consensus 317 ~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~ 396 (620)
T KOG0101|consen 317 TLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLL 396 (620)
T ss_pred HHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcccccccee
Confidence 999999999999999999999999999999999999999999 677889999999999999999999998 347889
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|+.|+++||++.++.|.++|++||++|++++++|++..|||+.+.|.||+|++.+.++|.++|.|.|.++||+|+|++
T Consensus 397 lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp 476 (620)
T KOG0101|consen 397 LIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVP 476 (620)
T ss_pred eeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCS 550 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~ 550 (1242)
+|+++|.+|.||+|+|++.|+.|||...++|.+. ..|+.+++++|..+++..+.+|+..+++.+.++.++.+..+....
T Consensus 477 ~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~ 556 (620)
T KOG0101|consen 477 QIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKAT 556 (620)
T ss_pred ceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhh
Confidence 9999999999999999999999999999999877 569999999999999999999999999999999997765322221
Q ss_pred hHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy5911 551 FVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMF 591 (1242)
Q Consensus 551 ~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a 591 (1242)
. +..+ ..+.+..+.+++.-+.+.+.|+|.-..|
T Consensus 557 ~--~~~~------~~i~~~~~~~~~~~~~~~i~wl~~~~~~ 589 (620)
T KOG0101|consen 557 V--EDEK------GKINEEDKQKILDKCNEVINWLDKNQLA 589 (620)
T ss_pred h--hhhc------cccChhhhhhHHHHHHHHHHHhhhcccc
Confidence 1 2222 2445556666777788888888865544
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-88 Score=829.06 Aligned_cols=536 Identities=60% Similarity=0.928 Sum_probs=506.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+++||||||||||++|++++|.+.+++|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 5689999999999999999999999999999999999999998777899999999999999999999999999999865
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEE--cCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEV--KDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 159 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa 159 (1242)
++...+.+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 80 -ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred -HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 455667899999988888877765 46789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHH
Q psy5911 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239 (1242)
Q Consensus 160 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~ 239 (1242)
+.|||+++++++||+|||++|+.... .+.++|||||||||||+|++++.+ +.++++++.|+.++||++||..|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGD----GVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcC----CEEEEEEEecCCCcChHHHHHHHHH
Confidence 99999999999999999999998654 567899999999999999999876 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHH
Q psy5911 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLK 319 (1242)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~ 319 (1242)
|+.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++...|||++|++++.|+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999887765444556788999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccce
Q psy5911 320 PCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLT 399 (1242)
Q Consensus 320 ~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~s 399 (1242)
+|+++|+++++.+.+|+.|+||||+||+|.|+++|+++||.++....||+++||+|||++|+.+++..+++.+.|++|++
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~ 393 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLS 393 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeecee
Confidence 99999999999999999999999999999999999999999899999999999999999999999988899999999999
Q ss_pred eEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEe
Q psy5911 400 LGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDL 479 (1242)
Q Consensus 400 igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~ 479 (1242)
||++..++.+.+|||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.++|.++|+|+|++
T Consensus 394 lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~i 473 (621)
T CHL00094 394 LGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDI 473 (621)
T ss_pred eeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 480 DANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 480 d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|.||+|+|++.+..+|++.++.|....+|++++++++.+++.++..+|+..+++.+++|++++++
T Consensus 474 d~~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i 538 (621)
T CHL00094 474 DANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLC 538 (621)
T ss_pred CCCCeEEEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHH
Confidence 99999999999999999999999877789999999999999999999999999999999997764
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-88 Score=830.71 Aligned_cols=534 Identities=65% Similarity=0.980 Sum_probs=507.6
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHH
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 83 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 83 (1242)
.|||||||||||++|++++|.+.+++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 4899999999999999999999999999999999999999977789999999999999999999999999999983 46
Q ss_pred HHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 84 QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 163 (1242)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AG 163 (1242)
+...+.+||. +..+++.+.+.++++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+.||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 6777899999 667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy5911 164 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243 (1242)
Q Consensus 164 l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~ 243 (1242)
|+++++++||+|||++|+......+.++|||||||||||+|++++.+ +.++++++.|+.++||.+||+.|++|+..
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~----~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGD----GVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecC----CeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 99999999999999999987655688999999999999999999976 89999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 323 (1242)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 323 (1242)
+|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..++.++.+.|||++|+++++|+++++..++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998898899999999999999999999999999999887665555678899999999999999999999999999
Q ss_pred HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeEEE
Q psy5911 324 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIE 403 (1242)
Q Consensus 324 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sigi~ 403 (1242)
+|+++++++.+|+.|+||||+||+|+|++.|+++||.++..+.||++|||+|||++|+.+++..+++.+.|++|++||++
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~ 393 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIE 393 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEE
Confidence 99999999999999999999999999999999999988999999999999999999999999888999999999999999
Q ss_pred eeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecCCe
Q psy5911 404 TMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483 (1242)
Q Consensus 404 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~g 483 (1242)
+.++.+.+|||+|++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|+++++.++|.++|+|+|++|.||
T Consensus 394 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G 473 (595)
T TIGR02350 394 TLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANG 473 (595)
T ss_pred ecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 484 ~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
+|+|++.+..+|++..+.+....+|++++++++.++..++...|+..++..+++|++++++
T Consensus 474 ~l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~i 534 (595)
T TIGR02350 474 ILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLA 534 (595)
T ss_pred eEEEEEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999887889999999999999999999999999999999997664
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-87 Score=818.95 Aligned_cols=522 Identities=45% Similarity=0.718 Sum_probs=490.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHHH
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 84 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 84 (1242)
+||||||||||+||++++|++++++|..|.+.+||+|+|.+++.+++|..|+.+...+|.++++++||+||+++.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999999777899999999999999999999999999999876432
Q ss_pred HHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 85 TVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 164 (1242)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AGl 164 (1242)
.+.+||.++...++.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+.|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999888889999888788999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHH
Q psy5911 165 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244 (1242)
Q Consensus 165 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~ 244 (1242)
+++++++||+|||++|+.... .+.++||||+||||||+|++++.+ +.++++++.|+.+|||++||+.|++|+.++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~----~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTK----GVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred CceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcC----CeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998764 578899999999999999999987 889999999999999999999999999976
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy5911 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA 324 (1242)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~ 324 (1242)
+ +.+...++..+.+|+.+||++|+.||....+.+.++. . +.++.++|||++|+++++|+++++..+++++
T Consensus 233 ~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~----g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 233 L----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--D----GKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred h----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--C----CcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4455668889999999999999999999888888764 1 2578999999999999999999999999999
Q ss_pred HHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC--ccceEEEeeccceeEE
Q psy5911 325 LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGI 402 (1242)
Q Consensus 325 l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~--~~~~~~~d~~~~sigi 402 (1242)
|+++++.+.+|+.|+||||+||+|+|+++|+++|+.++..+.||++|||+|||++|+.+++. .+++.+.|++|++||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999874 3578999999999999
Q ss_pred EeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecCC
Q psy5911 403 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482 (1242)
Q Consensus 403 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~~ 482 (1242)
++.+|.+.+|||||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|.|
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 462 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDAD 462 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 483 g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|+|+|++.+..||++..+.|..+.+|++++++++.+++++++.+|...++..++++++++++
T Consensus 463 gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 524 (599)
T TIGR01991 463 GLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERIL 524 (599)
T ss_pred CeEEEEEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999886665
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-88 Score=814.92 Aligned_cols=550 Identities=35% Similarity=0.550 Sum_probs=499.5
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCCh---
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE--- 721 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~--- 721 (1242)
++|||+||++++++++..|++++++|..|++.+||+|+|.++ .+++|..| +++++||+||+.+++.
T Consensus 21 viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred EEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 689999999999999999999999999999999999999865 58999987 7999999999998752
Q ss_pred -hHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 722 -IVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 722 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
......+. ......+...+.+.++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++||+
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~ 165 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAK 165 (595)
T ss_pred hhhHhhhhh----eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 22222221 1222344556777788999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 880 (1242)
+||++++++++||+|||++|+.... ..+++||||+||||||+|++++.+ +.++++++.|+.++||+|||.+|++|
T Consensus 166 ~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~----~~~~V~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 166 IAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQE----GIFQVIATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred HcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeC----CeEEEEEEcCCcccChHHHHHHHHHH
Confidence 9999999999999999999998764 456899999999999999999987 89999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHH
Q psy5911 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP 960 (1242)
Q Consensus 881 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~ 960 (1242)
+..+|... .+.. .++.||++|+.||....... ..++|||++|+++++|+++++..+
T Consensus 241 ~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 241 LCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 99887532 2222 23459999999998764311 267899999999999999999999
Q ss_pred HHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeeccccee
Q psy5911 961 CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTL 1040 (1242)
Q Consensus 961 i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~ 1040 (1242)
++++|++++ ..+|+.|+||||+||+|+|+++|+++||.++..+.||++|||+|||++|+.+++...++.+.|++|++|
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~sl 374 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSL 374 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccce
Confidence 999999998 568999999999999999999999999998889999999999999999999998778899999999999
Q ss_pred eEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEc
Q psy5911 1041 GIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 1120 (1242)
Q Consensus 1041 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d 1120 (1242)
|+++.+|.+.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|+++||.|+|.++|+|+|++|
T Consensus 375 gi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id 454 (595)
T PRK01433 375 GMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAID 454 (595)
T ss_pred EEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCH
Q psy5911 1121 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITD 1200 (1242)
Q Consensus 1121 ~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~ 1200 (1242)
.||+|+|++.+..||++.++.|..+.+++++|+++++++++++..+|...++..+++|+++++++.+++.++++...+++
T Consensus 455 ~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 534 (595)
T PRK01433 455 ADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSE 534 (595)
T ss_pred CCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 99999999999999999999998877899999999999999999999999999999999999999999999776677899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy5911 1201 EEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENII 1240 (1242)
Q Consensus 1201 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~ 1240 (1242)
++|+++...++++++||..++...+++.+++|++.+.+.+
T Consensus 535 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 574 (595)
T PRK01433 535 SEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSM 574 (595)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888877777777776643
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-87 Score=821.17 Aligned_cols=534 Identities=51% Similarity=0.815 Sum_probs=500.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
...+||||||||||+||++++|.+++++|..|++.+||+|+|.++ .+++|..|+.+..++|.++++++||+||++++++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 457999999999999999999999999999999999999999864 6799999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEc----CeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
.++...+.|||.++...++...+.+. .+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999999998888887766653 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCCC-CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKKP-DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~-~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
||++|||++++|++||+|||++|+..... .+.++|||||||||||+|++++.. +.++++++.|+.+|||++||.+
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~----~~~~v~a~~gd~~lGG~d~D~~ 237 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNR 237 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeC----CeEEEEEecCCCCCChHHHHHH
Confidence 99999999999999999999999986543 468899999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 237 IINHLIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 315 (1242)
Q Consensus 237 l~~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~ 315 (1242)
|++|+.++|+.++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .+++++|||++|+++++|+++
T Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~ 313 (653)
T PTZ00009 238 LVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFR 313 (653)
T ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHH
Confidence 9999999998876 46778889999999999999999999999999999876654 568999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcc-cccccCCCcchhhHhHHHHhhhhhcCC----ccce
Q psy5911 316 KSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGV----VKDV 390 (1242)
Q Consensus 316 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~l~~~----~~~~ 390 (1242)
++..+++++|+++++++.+|+.|+||||+||+|+|+++|+++|+ .++...+||++|||+|||++|+.+++. .+++
T Consensus 314 ~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~ 393 (653)
T PTZ00009 314 NTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDL 393 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccce
Confidence 99999999999999999999999999999999999999999996 578889999999999999999999873 4678
Q ss_pred EEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCc
Q psy5911 391 LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 470 (1242)
Q Consensus 391 ~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 470 (1242)
.+.|++|++||++..++.+.+|||+|++||++++++|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.++|.
T Consensus 394 ~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~ 473 (653)
T PTZ00009 394 LLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGV 473 (653)
T ss_pred EEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 471 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 471 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
++|+|+|++|.||+|+|++.+..+|++..+.|... ..|+.++++++.+++.++..+|...+++.+++|+++.++
T Consensus 474 ~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~I 548 (653)
T PTZ00009 474 PQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYC 548 (653)
T ss_pred ceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999988744 569999999999999999999999999999999997765
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-87 Score=814.83 Aligned_cols=519 Identities=44% Similarity=0.717 Sum_probs=485.4
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHH
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 83 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 83 (1242)
.+||||||||||+||++.+|.+++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++++||+||+++.+.
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~-- 96 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLADI-- 96 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--
Confidence 6899999999999999999999999999999999999999876 4899999999999999999999999999998763
Q ss_pred HHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 84 QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 163 (1242)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AG 163 (1242)
+...+.+||.+....++.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++||
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 176 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAG 176 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 44567789999888888888888878999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy5911 164 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243 (1242)
Q Consensus 164 l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~ 243 (1242)
|+++++++||+|||++|+.... .++++||||+||||||+|++++.+ +.++++++.|+.+|||++||..|++|+.+
T Consensus 177 l~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~----~~~evlat~gd~~lGG~d~D~~l~~~~~~ 251 (616)
T PRK05183 177 LNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSK----GVFEVLATGGDSALGGDDFDHLLADWILE 251 (616)
T ss_pred CCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeC----CEEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999998654 478899999999999999999987 78999999999999999999999999998
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 323 (1242)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 323 (1242)
+|+ .+...+++++.+|+.+||++|+.||....+.+.++.. ...|||++|+++++|+++++..++++
T Consensus 252 ~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~ 317 (616)
T PRK05183 252 QAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRR 317 (616)
T ss_pred HcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 775 3344678899999999999999999998888877421 12499999999999999999999999
Q ss_pred HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC--ccceEEEeeccceeE
Q psy5911 324 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLG 401 (1242)
Q Consensus 324 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~--~~~~~~~d~~~~sig 401 (1242)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||.++..+.||+++||+|||++|+.+++. ..++.+.|++|++||
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 318 ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccc
Confidence 999999999999999999999999999999999999888889999999999999999999874 458999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.+|.+.+|||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|.
T Consensus 398 i~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~ 477 (616)
T PRK05183 398 LETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDA 477 (616)
T ss_pred ceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
||+|+|++.++.+|++.++.|..+.+|++++++++.+++++++.+|...++..+.+++++.++
T Consensus 478 ~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i 540 (616)
T PRK05183 478 DGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVL 540 (616)
T ss_pred CCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999877889999999999999999999999999999999987665
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-86 Score=792.78 Aligned_cols=568 Identities=59% Similarity=0.889 Sum_probs=541.3
Q ss_pred ccccccCCceEEEEEEEeCC-cceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 644 PTFGKKKGTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.++|||+||+|||+++++.| .+.++.|..|.+.+||+|+|..++++++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 47899999999999999988 79999999999999999999987789999999999999999999999999998711
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
.....+.+.++.++|+++++++|++|++.++.+++.++.++||||||||++.||+++++|+++|
T Consensus 83 ----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~ia 146 (579)
T COG0443 83 ----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIA 146 (579)
T ss_pred ----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 1124566777899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
||+++++++||+|||++|+.+.. .+.+|||||+||||||+|++++.. +.++++++.|+.+|||+|||.+|++|+.
T Consensus 147 Gl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~----g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 147 GLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGD----GVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred CCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcC----CEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 99999999999999999999887 788999999999999999999986 7999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
.+|+.+++.++..++.+++||+.+||++|+.||...++.+.++++..+ .++..+|||++||+++.+++.++...+.
T Consensus 222 ~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 222 MEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876654 4578899999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
+++.+++++..+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++..+++++.|++|+++|+
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgi 377 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGI 377 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.++.+.++|++|+++|++++..|.+..|+|+.+.+++++|++.+..+|..+|.|.+.++||.|+|.++|+|+|.+|.|
T Consensus 378 e~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~ 457 (579)
T COG0443 378 ETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDAN 457 (579)
T ss_pred ccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+++|++.++.+|++.+++|..+.+|+++++++|.+.+..+.+.|+..++..+.+|.++.+++.++..|.+.. .+++++
T Consensus 458 gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 536 (579)
T COG0443 458 GILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEE 536 (579)
T ss_pred cceEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHH
Confidence 9999999999999999999999888999999999999999999999999999999999999999999997766 899999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q psy5911 1203 KESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIK 1241 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~ 1241 (1242)
++++..++.++++||+.. .++++.+.++|+....++..
T Consensus 537 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~ 574 (579)
T COG0443 537 KEKIEEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAE 574 (579)
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999984 88999999999998887764
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-85 Score=789.32 Aligned_cols=505 Identities=37% Similarity=0.584 Sum_probs=451.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|..+||||||||||+||++.+|.+++++|..|++.+||+|+|.++ .++||..| +++++||+||+++++.
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhh
Confidence 346999999999999999999999999999999999999999865 58999987 7999999999998752
Q ss_pred ----HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 ----IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
......+ .......+...+.+.++.++|+++++++|++|++.|+.+++.++.++||||||||++.||+++++
T Consensus 87 ~~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~ 162 (595)
T PRK01433 87 LNTPALFSLVK----DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVML 162 (595)
T ss_pred ccchhhHhhhh----heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 2211111 11222344556777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l 237 (1242)
||+.||++++++++||+|||++|+.... ...++||||+||||||+|++++.+ +.++|+++.|+.+|||+|||.+|
T Consensus 163 Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~----~~~~V~at~gd~~lGG~d~D~~l 237 (595)
T PRK01433 163 AAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQE----GIFQVIATNGDNMLGGNDIDVVI 237 (595)
T ss_pred HHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeC----CeEEEEEEcCCcccChHHHHHHH
Confidence 9999999999999999999999998764 456899999999999999999987 89999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 317 (1242)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i 317 (1242)
++|+..+|... .+.. .++.||++|+.||.+..... ..++|||++|+++++|+++++
T Consensus 238 ~~~~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~ 293 (595)
T PRK01433 238 TQYLCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERT 293 (595)
T ss_pred HHHHHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHH
Confidence 99999887422 2222 23469999999998764211 167899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeecc
Q psy5911 318 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTP 397 (1242)
Q Consensus 318 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~ 397 (1242)
..+++++|++++ ..+|+.|+||||+||+|+|+++|+++||.++..+.||+++||+|||++|+.+++...++.+.|++|
T Consensus 294 ~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p 371 (595)
T PRK01433 294 INIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVP 371 (595)
T ss_pred HHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecc
Confidence 999999999998 568999999999999999999999999998889999999999999999999998778899999999
Q ss_pred ceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEE
Q psy5911 398 LTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSF 477 (1242)
Q Consensus 398 ~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~ 477 (1242)
++||+++.+|.+.+|||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.|+|.++|+|+|
T Consensus 372 ~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf 451 (595)
T PRK01433 372 LSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451 (595)
T ss_pred cceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5911 478 DLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVL 553 (1242)
Q Consensus 478 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~a 553 (1242)
++|.||+|+|++.+..||++.++.|..+.+|++++++++.++++++..++...++..+.+++++..+ ....+.+.
T Consensus 452 ~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~ 526 (595)
T PRK01433 452 AIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALI-FNIERAIA 526 (595)
T ss_pred EECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999999999999887889999999999999989889988888888888876554 33444443
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-84 Score=777.46 Aligned_cols=514 Identities=62% Similarity=0.937 Sum_probs=489.6
Q ss_pred CeEEEEEcCccceEEEEEECC-eEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
..+|||||||||||||+++++ .+.++.|..|.+.+||+|+|..++++++|..|+.+...+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 479999999999999999988 79999999999999999999987789999999999999999999999999998611
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.....+.+.++.++|+++++++|++|++.++.+++..+.++||||||||++.||+++++|+++
T Consensus 83 -----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 83 -----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred -----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 112455667789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||+++++++||+|||++|+.+.. .+.+|||||+||||||+|++++.. +.++++++.||.+|||+|||.+|++|+
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~----g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGD----GVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcC----CEEEEeecCCCcccCchhHHHHHHHHH
Confidence 999999999999999999999887 788999999999999999999986 799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
..+|+.+++.++..++.++++|+.+||++|+.||+..++.+.+++...+ .++..+|||++||+++.+++.++..++
T Consensus 221 ~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~ 296 (579)
T COG0443 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPV 296 (579)
T ss_pred HHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876654 567889999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|.+++++..+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++..+++++.|++|+++|
T Consensus 297 ~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslg 376 (579)
T COG0443 297 EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLG 376 (579)
T ss_pred HHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.++.+..+|++|+++|++++..|++..|+|+.+.++++||++.+..+|..+|.|.+.++||.|+|.++|+|+|.+|.
T Consensus 377 ie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~ 456 (579)
T COG0443 377 IETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDA 456 (579)
T ss_pred cccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
||+++|++.++.+|++..++|..+.+|++++++.|.++++..++.|...+++.+.+++.+...
T Consensus 457 ~gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~ 519 (579)
T COG0443 457 NGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLI 519 (579)
T ss_pred CcceEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999988889999999999999999999988888888888886654
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-82 Score=793.02 Aligned_cols=590 Identities=45% Similarity=0.715 Sum_probs=534.7
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||++++++++++|.++++.|..|++.+||+|+|.++ ++++|..|...+.++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 469999999999999999999999999999999999999977 7899999999999999999999999999999999999
Q ss_pred hhcccCceEEEEcCCCCeEEEEc--Ce--eeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVK--DQ--YCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
...+.+||.++..+++...+.+. +. .++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999998898888775 54 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 880 (1242)
.|||+++++++||+|||++|+......++++||||+||||+|+|++++.+ +.++++++.++..+||.+||.+|++|
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~----~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSN----GQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhccc----ccccccccccccccccceecceeecc
Confidence 99999999999999999999988776788999999999999999999987 89999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccC--CceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHH
Q psy5911 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSL 958 (1242)
Q Consensus 881 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~ 958 (1242)
+.++|+.+++.+...+++.+.+|+.+||++|+.||. .....+.++.+..+ +.++.+.|||++|++++.|+++++.
T Consensus 236 ~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~---~~~~~~~itr~~fe~l~~~~~~~~~ 312 (602)
T PF00012_consen 236 LLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD---GEDFSITITREEFEELCEPLLERII 312 (602)
T ss_dssp HHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT---TEEEEEEEEHHHHHHHTHHHHHHTH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccceecccccccccccc
Confidence 999999999888888999999999999999999999 55556666555431 2678999999999999999999999
Q ss_pred HHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcc--cccceEEeecc
Q psy5911 959 KPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLLLDVT 1036 (1242)
Q Consensus 959 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~--~~~~~~~~~~~ 1036 (1242)
.+++++|++++++..+|+.|+||||+||+|+|++.|++.|+.++..++||++|||+|||++|+.+++ ..+++.+.|++
T Consensus 313 ~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~ 392 (602)
T PF00012_consen 313 EPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVT 392 (602)
T ss_dssp HHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBE
T ss_pred cccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccc
Confidence 9999999999999999999999999999999999999999988999999999999999999999988 56788999999
Q ss_pred cceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEE
Q psy5911 1037 PLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVS 1116 (1242)
Q Consensus 1037 ~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~ 1116 (1242)
|++|||+..++.+.+++|+|+++|+..+..|.+..++|+.+.+.+|+|++....+|..||++.+.++++.+.|.++|+|+
T Consensus 393 ~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 472 (602)
T PF00012_consen 393 PFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVT 472 (602)
T ss_dssp SSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccC
Q psy5911 1117 FDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENT 1196 (1242)
Q Consensus 1117 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~ 1196 (1242)
|++|.||+|+|++.+..++.+..+.+.....+++++++++.++++++..+|+..++..+++|++|+++|.+|+.+++...
T Consensus 473 f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~ 552 (602)
T PF00012_consen 473 FELDENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKD 552 (602)
T ss_dssp EEEETTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EeeeeeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999877779999999999999999999999999999999999999999999977677
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1197 KITDEEK-ESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1197 ~~~~~~~-~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
.++++++ +++++..+++.+|.++.+.++|++++++|++..+||..|
T Consensus 553 ~~~~~~~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r 599 (602)
T PF00012_consen 553 FVSEEEKKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKR 599 (602)
T ss_dssp GSTHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887 444444444444444447899999999999999999865
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-78 Score=758.73 Aligned_cols=532 Identities=48% Similarity=0.765 Sum_probs=488.9
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHHH
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 84 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 84 (1242)
|||||||||||+||++.+|.++++.|..|++.+||+|+|.++ ++++|..|.....++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999976 8899999999999999999999999999999999999
Q ss_pred HHhccCCeEEEecCCCCeEEEEc--C--eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 85 TVLKMVPYKIVAADNGDAWVEVK--D--KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 160 (1242)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~ 160 (1242)
...+.+||.++..+++.+.+.+. + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999988888888775 4 4899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHH
Q psy5911 161 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240 (1242)
Q Consensus 161 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~ 240 (1242)
.|||++++||+||+|||++|+......++++|||||||||+|+|++++.+ +.++++++.++..+||.+||.+|++|
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~----~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSN----GQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhccc----ccccccccccccccccceecceeecc
Confidence 99999999999999999999988776789999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcC--CceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHH
Q psy5911 241 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSL 318 (1242)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~ 318 (1242)
+.++|+.+++.++..+++.+.+|+.+||++|+.||. .....+.++.+..+ +.++.+.|||++|+++++|+++++.
T Consensus 236 ~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~---~~~~~~~itr~~fe~l~~~~~~~~~ 312 (602)
T PF00012_consen 236 LLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD---GEDFSITITREEFEELCEPLLERII 312 (602)
T ss_dssp HHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT---TEEEEEEEEHHHHHHHTHHHHHHTH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccceecccccccccccc
Confidence 999999999989989999999999999999999999 55666666655542 2689999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC--CccceEEEeec
Q psy5911 319 KPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLLLDVT 396 (1242)
Q Consensus 319 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~--~~~~~~~~d~~ 396 (1242)
.+++++|++++++..+|+.|+||||+||+|+|++.|++.|+.++..+.||++|||+|||++|+.+++ ..+++.+.|++
T Consensus 313 ~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~ 392 (602)
T PF00012_consen 313 EPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVT 392 (602)
T ss_dssp HHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBE
T ss_pred cccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccc
Confidence 9999999999999999999999999999999999999999988999999999999999999999988 56788899999
Q ss_pred cceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEE
Q psy5911 397 PLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVS 476 (1242)
Q Consensus 397 ~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~ 476 (1242)
|++|||+..++.+.+++++|+++|+..+..|++..++|+.+.|.+|+|++....+|..||++.|.++++.+.|.++|+|+
T Consensus 393 ~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 472 (602)
T PF00012_consen 393 PFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVT 472 (602)
T ss_dssp SSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 477 FDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 477 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|++|.||+|+|++.+..++.+..+.+.....+++++++++.++.+++...|+..++..+.+|+++.++
T Consensus 473 f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i 540 (602)
T PF00012_consen 473 FELDENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYI 540 (602)
T ss_dssp EEEETTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeeeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHH
Confidence 99999999999999999999999999877779999999999999999999999999999999997665
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=679.26 Aligned_cols=579 Identities=32% Similarity=0.502 Sum_probs=529.0
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|+|+|..+|+++|.+.|..++|.|+.++|.+|++|+|.++ .+++|.+|..+..+|+.|++..+||++|+.|+||.+|
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 789999999999999999999999999999999999999987 6889999999999999999999999999999999999
Q ss_pred hhcccCceEEEEcCCCCeEEEEc----CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
...+.+|+.++..++|.+.+.++ .+.++|+++++|+|.+|+..++..+..++.+|||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 99999999999999999999886 36899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCC------CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 874 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~------~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D 874 (1242)
+|||+++++++|.+|+|++||..+. .++++++++|+|.+++.+|++.+.. +.++++++.+|.++||++||
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~k----G~lkvl~ta~D~~lGgr~fD 237 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTK----GKLKVLATAFDRKLGGRDFD 237 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeecc----CcceeeeeecccccccchHH
Confidence 9999999999999999999999764 2468899999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHH
Q psy5911 875 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLI 954 (1242)
Q Consensus 875 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~ 954 (1242)
+.|.+|+..+|+.+++++...++++..||+..||+.|+.||.+...+.++++++.+.+ .+..|+|++||+++.|++
T Consensus 238 e~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~d----vs~~i~ReEfEel~~plL 313 (727)
T KOG0103|consen 238 EALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD----VSSKIKREEFEELSAPLL 313 (727)
T ss_pred HHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecch----hhhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999889999999998754 778999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcc--cccceEE
Q psy5911 955 SKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLL 1032 (1242)
Q Consensus 955 ~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~--~~~~~~~ 1032 (1242)
+++..++.++|.++++...||+.|.+|||+||+|.|+++|.++||++..+++|.++|||+|||+++|++|+ .++++.+
T Consensus 314 ~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v 393 (727)
T KOG0103|consen 314 ERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSV 393 (727)
T ss_pred HhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 5778999
Q ss_pred eecccceeeEEEe----C-ceEEEEecCCCCcccceEEEeeeccCCCceEEEEeeccc-ccccccCcceeeEEecCCCCC
Q psy5911 1033 LDVTPLTLGIETM----G-GVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGE-RKKASQNKSLGKFDLNDISPA 1106 (1242)
Q Consensus 1033 ~~~~~~~~gi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~-~~~~~~n~~lg~~~l~~~~~~ 1106 (1242)
.|+.|++|.+.+. + +....+||+|.++|..+..+|....+ +.+.++++. ...+.....|+++++.++.+.
T Consensus 394 ~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~ 469 (727)
T KOG0103|consen 394 EDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGVTPS 469 (727)
T ss_pred ecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEecccccC
Confidence 9999999998864 2 45577999999999999999988764 556655554 555556678999999999987
Q ss_pred CCC-cCEEEEEEEEcCCeeEEEEEEec----------------------------CCCc----eEEEEEc--cCCCCCHH
Q psy5911 1107 PRG-VPQIEVSFDLDANGILNVTAKDK----------------------------KTGK----EQSIIIK--SSGGLSEI 1151 (1242)
Q Consensus 1107 ~~g-~~~i~v~~~~d~~g~l~v~~~~~----------------------------~~~~----~~~~~i~--~~~~l~~~ 1151 (1242)
..| ..+++|.++++.+|+++|..... ..++ ...+.+. ..++++..
T Consensus 470 ~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~ 549 (727)
T KOG0103|consen 470 EDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITD 549 (727)
T ss_pred ccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHH
Confidence 774 56799999999999999874210 0111 1112222 22469999
Q ss_pred HHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhh-ccCCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Q psy5911 1152 EIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKD-ENTKITDEEKESIEKSISNLELLIKGD----DIELIK 1226 (1242)
Q Consensus 1152 e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wl~~~----~~~~~~ 1226 (1242)
+++..++.+.+|..+|+...++.+++|.||+|+|.||++|.+ |.+++++++++++...|+++++|||++ ....|.
T Consensus 550 ~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~ 629 (727)
T KOG0103|consen 550 ELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYV 629 (727)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHH
Confidence 999999999999999999999999999999999999999964 888999999999999999999999976 478999
Q ss_pred HHHHHHHHHH
Q psy5911 1227 KGNEDLLKIS 1236 (1242)
Q Consensus 1227 ~~~~~l~~~~ 1236 (1242)
.|+.+|+...
T Consensus 630 ~kl~elk~~g 639 (727)
T KOG0103|consen 630 AKLEELKKLG 639 (727)
T ss_pred HHHHHHHhhh
Confidence 9999998765
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-71 Score=623.74 Aligned_cols=529 Identities=33% Similarity=0.517 Sum_probs=484.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+ |+|||||..+|.+|+.+.+..++|.|+.++|.||++|+|.++ .+++|.+|..+..+|+.|++..+||++|+.|+||
T Consensus 1 ms-vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP 78 (727)
T KOG0103|consen 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDP 78 (727)
T ss_pred CC-ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCCh
Confidence 56 999999999999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEc----CeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
.+|...+.+|+.++...++.+.+.++ .+.++|++|.+|+|.+|+..++..+..++.+|||+||+||++.||+++.+
T Consensus 79 ~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravld 158 (727)
T KOG0103|consen 79 EVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLD 158 (727)
T ss_pred HhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHh
Confidence 99999999999999999999998885 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCC------CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 231 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~------~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 231 (1242)
||++|||+++++++|.+|+|++||..+. .++++++++|+|.+++.+|++.+.. +.+.++++.+|.++||+
T Consensus 159 AA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~k----G~lkvl~ta~D~~lGgr 234 (727)
T KOG0103|consen 159 AARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTK----GKLKVLATAFDRKLGGR 234 (727)
T ss_pred HHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeecc----Ccceeeeeecccccccc
Confidence 9999999999999999999999998764 2468899999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHH
Q psy5911 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVE 311 (1242)
Q Consensus 232 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~ 311 (1242)
+||+.|.+|+..+|+.++++|+..++++..||+..||++|+.||++...+.++++++.+ .+.+..|+|++||+++.
T Consensus 235 ~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~ 310 (727)
T KOG0103|consen 235 DFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSA 310 (727)
T ss_pred hHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999987 46788999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC--Cccc
Q psy5911 312 DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKD 389 (1242)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~--~~~~ 389 (1242)
|+++++..++.++|+++++..++|+.|.+|||+||||.|++.|+++||+++.+++|.++|||+|||+++|++|+ ++++
T Consensus 311 plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRe 390 (727)
T KOG0103|consen 311 PLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVRE 390 (727)
T ss_pred HHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 6788
Q ss_pred eEEEeeccceeEEEee----C-CeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecC-cccccCCcceeEEEecCC
Q psy5911 390 VLLLDVTPLTLGIETM----G-GVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGE-RKKASQNKSLGKFDLNDI 463 (1242)
Q Consensus 390 ~~~~d~~~~sigi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~i~~~ 463 (1242)
+.+.|+.|++|.+.+. + +....+||+|.++|..+..+|.... .|.+.++++. ...+.....|+++++.++
T Consensus 391 f~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v 466 (727)
T KOG0103|consen 391 FSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGV 466 (727)
T ss_pred cceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEeccc
Confidence 9999999999999865 2 4557899999999999999998876 4888888776 444556689999999999
Q ss_pred CCCCC-CcCEEEEEEEecCCeeEEEEEEEc----------------------------CCC----cEEEEEEe-c-CCCC
Q psy5911 464 SPAPR-GVPQIEVSFDLDANGILNVTAKDK----------------------------KTG----KEQSIIIK-S-SGGL 508 (1242)
Q Consensus 464 ~~~~~-g~~~i~v~~~~d~~g~l~v~~~~~----------------------------~~~----~~~~~~i~-~-~~~l 508 (1242)
.+... ...+++|..+++.+|+.+|.-... ..+ +...+.+. + .++|
T Consensus 467 ~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l 546 (727)
T KOG0103|consen 467 TPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGAL 546 (727)
T ss_pred ccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeecccc
Confidence 98777 456899999999999999874211 111 11223333 2 2469
Q ss_pred chHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 509 SEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 509 ~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
...+++..++.+-+|..+|...++..+++|.++++.
T Consensus 547 ~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyV 582 (727)
T KOG0103|consen 547 ITDELELYIEKENKMILQDKLEKETVDAKNALEEYV 582 (727)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999999998773
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=564.94 Aligned_cols=585 Identities=28% Similarity=0.412 Sum_probs=502.6
Q ss_pred cccccCCceEEEEEEEeCCcc-eEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~-~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
+.++|+|+.+..++++.+|-| +++.|..++|++|++|+|.+ |+|++|.+|.....++|++++..++.|+|+...++.+
T Consensus 24 vmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~-~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 24 VMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKG-GERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred heeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecC-CceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 458999999999999999976 78889999999999999975 5899999999999999999999999999999999999
Q ss_pred HhhcccCceEEE-EcC-CCCeEEEEcC-eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 724 QKDIKMVPYKIV-AAD-NGDAWVEVKD-QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 724 ~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
....+++|+.-. .++ .+.+.+.+.+ ..|++|+++||+|.+.+..|+.+...++.++|||||.||++.||+++.+||+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~ 182 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQ 182 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHH
Confidence 999888887655 443 4567778877 7899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCC----CCCcEEEEEeeCCCceEEEEEEEeecC------CCceEEEEEecCCCCCCc
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKK----PDDRIIVVYDLGGGTFDISVIEIANVD------GETQFEVLSTNGDTFLGG 870 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~----~~~~~vlV~D~GggT~dvsi~~~~~~~------~~~~~~v~~~~~~~~lGG 870 (1242)
+||++++.||||-+|||+.|+..+. ..+++++|||||+|++.++++.+.-.. ....+++++.++|..|||
T Consensus 183 iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG 262 (902)
T KOG0104|consen 183 IAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGG 262 (902)
T ss_pred hcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccch
Confidence 9999999999999999999999863 467899999999999999999985321 225899999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhcCC--CCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHH
Q psy5911 871 EDFDMRIINHLIYEFKIENGV--DLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948 (1242)
Q Consensus 871 ~~~D~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~ 948 (1242)
..|..+|.+|+.+.|...++. ++..+++++.+|.++|+++|..||.+..+.+.++.+.++.| |+.+|||++||+
T Consensus 263 ~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiD----Fr~kvTRe~fEe 338 (902)
T KOG0104|consen 263 LEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDID----FRLKVTREEFEE 338 (902)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccc----cccceeHHHHHH
Confidence 999999999999999988763 57889999999999999999999999999999999988754 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc-ccccccCCcchhhhhhHHHhhhhhcc--
Q psy5911 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSG-- 1025 (1242)
Q Consensus 949 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~v~~~~~p~~aVa~GAa~~a~~l~~-- 1025 (1242)
+|.++..++..+|.++|..++++.++|+.|+|.||+||+|.||+.|.++.| .++...+|.|||++.||+++||.||.
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999997 47889999999999999999999997
Q ss_pred cccceEEeecccceeeEEEeCc--------eEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceee
Q psy5911 1026 VVKDVLLLDVTPLTLGIETMGG--------VMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGK 1097 (1242)
Q Consensus 1026 ~~~~~~~~~~~~~~~gi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~ 1097 (1242)
.++++.+.|.++++|-++..+. .-..+|++|.++|.++..+|+...|+ +.+.+-.|.-. ..+-.
T Consensus 419 KvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~ 490 (902)
T KOG0104|consen 419 KVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTT 490 (902)
T ss_pred cccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccE
Confidence 4678999999999988875543 22348999999999987788766552 33332222110 22446
Q ss_pred EEecCCCC----CCC---CcCEEEEEEEEcCCeeEEEEEEec------------------C---C---------------
Q psy5911 1098 FDLNDISP----APR---GVPQIEVSFDLDANGILNVTAKDK------------------K---T--------------- 1134 (1242)
Q Consensus 1098 ~~l~~~~~----~~~---g~~~i~v~~~~d~~g~l~v~~~~~------------------~---~--------------- 1134 (1242)
+++.++.. .+. ....|+++|.+|..|++.|+..+. + |
T Consensus 491 velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ 570 (902)
T KOG0104|consen 491 VELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEED 570 (902)
T ss_pred EEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhh
Confidence 77776652 121 133589999999999999886421 0 0
Q ss_pred --------Cc--e------------------------------------EEEEEccC----CCCCHHHHHHHHHHHHhhh
Q psy5911 1135 --------GK--E------------------------------------QSIIIKSS----GGLSEIEIENMIKDAELNS 1164 (1242)
Q Consensus 1135 --------~~--~------------------------------------~~~~i~~~----~~l~~~e~~~~~~~~~~~~ 1164 (1242)
++ + +.+.|... ..|++..++.....++.+.
T Consensus 571 ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~ 650 (902)
T KOG0104|consen 571 AEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFV 650 (902)
T ss_pred hhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHH
Confidence 00 0 01334332 2488899999999999999
Q ss_pred HhhHhhHHHHHhhhhHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q psy5911 1165 ELDKKFEELVKCKNEADSTISIVKKNLKD--ENTKITDEEKESIEKSISNLELLIKGD----DIELIKKGNEDLLKISEN 1238 (1242)
Q Consensus 1165 ~~d~~~~~~~~~~n~le~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~----~~~~~~~~~~~l~~~~~~ 1238 (1242)
+.|+...++.++.|+||.|+|.+...|.+ |..+.+++++..|...+..+.+||+++ ..+.+.+++.+|++.+..
T Consensus 651 ~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~ 730 (902)
T KOG0104|consen 651 QKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETS 730 (902)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999954 678999999999999999999999976 367899999999998877
Q ss_pred HhhC
Q psy5911 1239 IIKK 1242 (1242)
Q Consensus 1239 ~~~~ 1242 (1242)
+..|
T Consensus 731 ~~~R 734 (902)
T KOG0104|consen 731 KNFR 734 (902)
T ss_pred hhHH
Confidence 6543
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=534.28 Aligned_cols=476 Identities=30% Similarity=0.470 Sum_probs=419.8
Q ss_pred CeEEEEEcCccceEEEEEECCeE-EEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~-~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
.+|++||+||.++.||++..|-| +|+.|..++|++|++|+|.+ +++++|.+|.....++|++++..++.++|+...++
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~-~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKG-GERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecC-CceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 47999999999999999999976 78889999999999999985 58999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecC--CCCeEEEEcC-eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAAD--NGDAWVEVKD-KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA 158 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~A 158 (1242)
.++.+.+.+||.-+..+ .+.+.|.+.+ ..|++++++||+|.+.+..|+.+...++.++|||||.||++.||+++.+|
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A 180 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA 180 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHH
Confidence 99999998887655433 5678888887 88999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechHHHHHHHhccCCC----CCCcEEEEEEeCCcceeeeEEEEEeec------CCceEEEEEecCCCCc
Q psy5911 159 GKIAGLEVLRIINEPTAAALAYGLDKK----PDDRIIVVYDLGGGTFDISVIEIANVD------GETQFEVLSTNGDTFL 228 (1242)
Q Consensus 159 a~~AGl~~~~li~Ep~AAal~y~~~~~----~~~~~vlV~D~GggT~Dvsv~~~~~~~------~~~~~~v~~~~~~~~l 228 (1242)
|++||++++.|||+-+|||+.|+..+. ..+++++|||+|+|++.++++.+.-.. ....+++++.++|..|
T Consensus 181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL 260 (902)
T KOG0104|consen 181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 (902)
T ss_pred HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCcc
Confidence 999999999999999999999999863 468899999999999999999985432 2367999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHH
Q psy5911 229 GGEDFDMRIINHLIYEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 306 (1242)
Q Consensus 229 GG~~iD~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~f 306 (1242)
||..|..+|.+|+.+.|.+.++ .++..+++++.+|.++|+++|..||.+..+.+.++.+.++ .+|..+|||++|
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe~f 336 (902)
T KOG0104|consen 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTREEF 336 (902)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHHHH
Confidence 9999999999999999998876 4678899999999999999999999999999999999887 579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcc-cccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 307 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 307 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
|++|.++..++..+|+++|..++++..+|+.|+|.||+||+|.||+.|.++.| .++...+|.|||++.||+++||.||.
T Consensus 337 Eelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk 416 (902)
T KOG0104|consen 337 EELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK 416 (902)
T ss_pred HHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999997 46889999999999999999999998
Q ss_pred --CccceEEEeeccceeEEEeeCC--------eeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcce
Q psy5911 386 --VVKDVLLLDVTPLTLGIETMGG--------VMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSL 455 (1242)
Q Consensus 386 --~~~~~~~~d~~~~sigi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l 455 (1242)
+++++.+.|.++++|-++..+. ....+|++|.++|.++..+|+.+.|+ |.+.+-.|.-. .-+
T Consensus 417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl 488 (902)
T KOG0104|consen 417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNL 488 (902)
T ss_pred cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCc
Confidence 5678999999999988876543 22358999999999988888766553 44444333211 224
Q ss_pred eEEEecCCCCCC----C---CcCEEEEEEEecCCeeEEEEEEE
Q psy5911 456 GKFDLNDISPAP----R---GVPQIEVSFDLDANGILNVTAKD 491 (1242)
Q Consensus 456 g~~~i~~~~~~~----~---g~~~i~v~~~~d~~g~l~v~~~~ 491 (1242)
-.|++.++...- . ....|+++|.+|.+|++.|+..+
T Consensus 489 ~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~e 531 (902)
T KOG0104|consen 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVE 531 (902)
T ss_pred cEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeee
Confidence 477887776321 1 12359999999999999988653
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=494.33 Aligned_cols=342 Identities=27% Similarity=0.429 Sum_probs=291.2
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEe----------------------------------------
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYT---------------------------------------- 44 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 44 (1242)
++|||||||||++|++++|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999995
Q ss_pred cCCcEEEcHHHHHhhhhCCCch--hhhchhhhCCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHH
Q psy5911 45 EDNRIIVGLPAKRQAITNPNNT--LYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILK 122 (1242)
Q Consensus 45 ~~~~~~vG~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~ 122 (1242)
+++.+++|..|+.++..+|.++ +.++||+||.....+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 3457889999999999999988 679999999752110 122348999999999
Q ss_pred HHHHHHHhHhcCCCCcEEEEecCCCC-----HHHHHH---HHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEE
Q psy5911 123 KMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQA---TKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVY 194 (1242)
Q Consensus 123 ~l~~~a~~~~~~~~~~~vitVPa~f~-----~~qr~~---~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~ 194 (1242)
+|++.++.+++.++.++|||||++|+ +.||++ +++||+.||++++++++||+|||++|+.... .++.+|||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~ 214 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVV 214 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEE
Confidence 99999999999999999999999998 788776 6999999999999999999999999987543 67889999
Q ss_pred EeCCcceeeeEEEEEeec---CCceEEEEEecCCCCcchHHHHHHHH-HHHHHHHHH----hcCCCC-------------
Q psy5911 195 DLGGGTFDISVIEIANVD---GETQFEVLSTNGDTFLGGEDFDMRII-NHLIYEFKI----ENGVDL------------- 253 (1242)
Q Consensus 195 D~GggT~Dvsv~~~~~~~---~~~~~~v~~~~~~~~lGG~~iD~~l~-~~l~~~~~~----~~~~~~------------- 253 (1242)
||||||+|+|++++.... .....+++++.| .++||+|||..|+ +++...|.. +.+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 999999999999986421 123578999998 5799999999998 677777742 111110
Q ss_pred ----------------------CCCHHHH------------HHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEE
Q psy5911 254 ----------------------SGDSLAM------------QRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 299 (1242)
Q Consensus 254 ----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~ 299 (1242)
..++..+ .+|+.+||++|+.||..+++.+.++.+.. ++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~------~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD------GLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC------Ccce
Confidence 0123223 36889999999999999999998876542 3678
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
.|||++|+++++|+++++..+++++|+++++. ++.|+||||+|++|.|++.+++.||.......+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 579999999999999999999999876667889999999999999
Q ss_pred hhhh
Q psy5911 380 AGVL 383 (1242)
Q Consensus 380 a~~l 383 (1242)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 8754
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=467.84 Aligned_cols=342 Identities=26% Similarity=0.412 Sum_probs=290.6
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEe----------------------------------------
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYT---------------------------------------- 684 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~---------------------------------------- 684 (1242)
.+|||+||+||+++++++|+++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5799999999999999999999999999999999999994
Q ss_pred cCCcEEEcHHHHHHhhhCCcch--hhHHHHhcCCCCCChhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHH
Q psy5911 685 EDNRIIVGLPAKRQAITNPNNT--LYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILK 762 (1242)
Q Consensus 685 ~~~~~~~G~~A~~~~~~~p~~~--~~~~krllg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~ 762 (1242)
+++..++|..|+.++..+|..+ +.++||+||.....+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 3457889999999999999998 669999999752110 112348999999999
Q ss_pred HHHHHHHhHhCCCCCcEEEEecCCCC-----HHHHHH---HHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEE
Q psy5911 763 KMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQA---TKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVY 834 (1242)
Q Consensus 763 ~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~ 834 (1242)
+|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.... .++.+|||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~ 214 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVV 214 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEE
Confidence 99999999999999999999999998 788776 6999999999999999999999999987554 57889999
Q ss_pred eeCCCceEEEEEEEeecC---CCceEEEEEecCCCCCCchHHHHHHH-HHHHHHhhhh----cCCCC-------------
Q psy5911 835 DLGGGTFDISVIEIANVD---GETQFEVLSTNGDTFLGGEDFDMRII-NHLIYEFKIE----NGVDL------------- 893 (1242)
Q Consensus 835 D~GggT~dvsi~~~~~~~---~~~~~~v~~~~~~~~lGG~~~D~~l~-~~l~~~~~~~----~~~~~------------- 893 (1242)
|+||||+|+|++++.... .....+++++.| .++||+|||..|+ +++...|+.. .+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 999999999999986421 123578999998 5799999999998 6787777521 11110
Q ss_pred ----------------------CCCHHHH------------HHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEE
Q psy5911 894 ----------------------SGDSLAM------------QRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 939 (1242)
Q Consensus 894 ----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~ 939 (1242)
..++..+ .+|+.+||++|+.||..+++.+.++++.. ++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~------~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD------GLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC------Ccce
Confidence 0123223 36889999999999999999998876532 3678
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 940 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 940 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
+|||++|+++++|+++++.++++++|+++++. ++.|+||||+|+||.|++.+++.||.......+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 589999999999999999999999876666889999999999999
Q ss_pred hhhh
Q psy5911 1020 AGVL 1023 (1242)
Q Consensus 1020 a~~l 1023 (1242)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 8754
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=352.70 Aligned_cols=313 Identities=27% Similarity=0.389 Sum_probs=242.8
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC-Cc-EEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
.-+||||||+||+++.. ++..++. .||+|+|..+ +. +.+|.+|+....+.|.+.... +
T Consensus 4 ~~~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~----- 63 (336)
T PRK13928 4 RDIGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R----- 63 (336)
T ss_pred ceeEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c-----
Confidence 34899999999999886 4444553 5999999954 23 479999988765655553321 0
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
| +.+..+...+++..+|+++.+.+..........+|||||++|+..||+++++|++.
T Consensus 64 ---------p--------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ 120 (336)
T PRK13928 64 ---------P--------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQ 120 (336)
T ss_pred ---------c--------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1 11233456678888888888665433223345799999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
||++++.+++||+|||++|+.+.. .+..++|||+||||||+++++... . ...++..+||++||+.|++++
T Consensus 121 ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~-----~----~~~~~~~lGG~did~~i~~~l 190 (336)
T PRK13928 121 AGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGG-----I----VTSSSIKVAGDKFDEAIIRYI 190 (336)
T ss_pred cCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCC-----E----EEeCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999998654 456689999999999999998643 1 134578899999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce----eeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ----TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 317 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i 317 (1242)
..+|....+ ...||++|+.++.... ..+.+.. .+...+....++|+|++|++++.+.++++
T Consensus 191 ~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 191 RKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 977753221 3579999999875421 2222211 11112234578999999999999999999
Q ss_pred HHHHHHHHHHcC--CCcCCcc-eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 318 LKPCEVALNDAK--IDKSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 318 ~~~i~~~l~~~~--~~~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
.+.+++.|+.++ +....++ .|+|+||+|++|.+++++++.|+.++....||+++||+|||+++..+.
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhchH
Confidence 999999999986 3445677 799999999999999999999999999999999999999999987643
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=345.66 Aligned_cols=309 Identities=25% Similarity=0.370 Sum_probs=245.2
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCc--EEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR--IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~--~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
..+||||||+||++ |.+++.. +.| .||+|+++.++. +.+|.+|+.+..++|.++... +-
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~p-------- 65 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RP-------- 65 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ec--------
Confidence 46999999999985 5556554 444 499999986543 679999999888888775542 11
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCC--cEEEEecCCCCHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIE--KAVITVPAYFNDSQRQATKDAG 159 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~--~~vitVPa~f~~~qr~~~~~Aa 159 (1242)
+....+...++++.+|++++..++..++..+. .+|||||++|+..||+++.+|+
T Consensus 66 ------------------------i~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 66 ------------------------MKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred ------------------------CCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 11223445689999999999998888776554 7999999999999999999999
Q ss_pred HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHH
Q psy5911 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239 (1242)
Q Consensus 160 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~ 239 (1242)
+.||++++.+++||+|||++|+.... .+..++|+|+||||+|++++.+.. . + ..++..+||++||+.|.+
T Consensus 122 ~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~-----~---~-~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 122 KNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGG-----V---V-SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCC-----E---E-EecCcCCHHHHHHHHHHH
Confidence 99999999999999999999987654 456789999999999999998653 1 1 345577999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc----eeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----QTDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 315 (1242)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~ 315 (1242)
++...+.. .. . ...||++|+.++... ...+.+... +...+....+.+++++|++++.+++.
T Consensus 192 ~l~~~~~~----~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~ 256 (335)
T PRK13929 192 FVRKKYNL----LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLL 256 (335)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHH
Confidence 99875532 21 1 258999999998642 112222111 11112346789999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--cCCcc-eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 316 KSLKPCEVALNDAKID--KSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 316 ~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
++.+.+.+.|+.+... ...++ .|+|+||+|++|.+++++++.|+.++....||+++||+||+..-
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999998644 35577 69999999999999999999999999989999999999998763
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=330.58 Aligned_cols=312 Identities=27% Similarity=0.392 Sum_probs=233.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC-Cc-EEEcHHHHHhhhhCCCchhhhchhhhCCCCC
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYT 79 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~ 79 (1242)
++..|||||||++++++.. |+..++ .+||+|++.++ +. .++|.+|+.+...+|.++... +
T Consensus 4 ~~~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~------- 65 (334)
T PRK13927 4 FSNDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R------- 65 (334)
T ss_pred CcceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e-------
Confidence 3457999999999998543 332333 27999999865 33 589999998776666543211 1
Q ss_pred ChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 80 DEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 159 (1242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa 159 (1242)
.+....+...+.+..+|+++........ .....+|+|||++|++.||+++++|+
T Consensus 66 -------------------------pi~~G~i~d~~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~ 119 (334)
T PRK13927 66 -------------------------PMKDGVIADFDVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESA 119 (334)
T ss_pred -------------------------cCCCCeecCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1111222334555666776665544332 22248999999999999999999999
Q ss_pred HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHH
Q psy5911 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239 (1242)
Q Consensus 160 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~ 239 (1242)
+.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... . ...++..+||++||+.|.+
T Consensus 120 ~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~----~-----~~~~~~~lGG~~id~~l~~ 189 (334)
T PRK13927 120 LGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGG----I-----VYSKSVRVGGDKFDEAIIN 189 (334)
T ss_pred HHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCC----e-----EeeCCcCChHHHHHHHHHH
Confidence 99999999999999999999987654 456689999999999999997653 1 1334567999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce----eeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ----TDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 315 (1242)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~ 315 (1242)
++.+++... . + ...||++|+.++.... ..+.+.. .+...+.+..+.|+|++|++++.+.++
T Consensus 190 ~l~~~~~~~----~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 190 YVRRNYNLL----I--G-------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHhCcC----c--C-------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 998766421 1 1 3478999999986432 2222211 111112345789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCc--CCcc-eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 316 KSLKPCEVALNDAKIDK--SKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 316 ~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
++.+.+.++|+.++... ..++ .|+|+||+|++|.++++|++.|+.++....+|+++||+|||+++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999886432 2244 5999999999999999999999999999999999999999999765
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=330.38 Aligned_cols=311 Identities=26% Similarity=0.371 Sum_probs=240.4
Q ss_pred ccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC-CcE-EEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NRI-IVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 646 ~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~-~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
+|||+||+++++++. ++..++. .||+|+|..+ +.+ .+|..|+......|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c-------
Confidence 699999999999876 5555554 5999999954 334 68999987765555554320 0
Q ss_pred HhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 803 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AG 803 (1242)
| +.+..+...++...+|+++.+.+..........+|||||++|+..||+++++|++.||
T Consensus 64 -------p--------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 64 -------P--------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -------c--------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 1 0112234556778888888765543222334479999999999999999999999999
Q ss_pred CceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHH
Q psy5911 804 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883 (1242)
Q Consensus 804 l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 883 (1242)
++.+.+++||+|||++|+.... .+..++|||+||||||+++++... . ...++..+||++||+.|.+++..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~-----~----~~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGG-----I----VTSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred CCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCC-----E----EEeCCcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998654 455689999999999999998653 1 23457889999999999999998
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHH
Q psy5911 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----QTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLK 959 (1242)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~ 959 (1242)
+|+...+ ...||++|+.++... ...+.+.. .+...+....++|+|++|++++.+.++++.+
T Consensus 193 ~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~ 257 (336)
T PRK13928 193 KYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQ 257 (336)
T ss_pred HhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHH
Confidence 7753322 357999999987541 12222211 1111224467899999999999999999999
Q ss_pred HHHHHHHhcC--CCccCcc-eEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 960 PCEVALNDAK--IDKSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 960 ~i~~~l~~~~--~~~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
.+++.|+.++ +....++ .|+|+||+|++|.+++++++.|+.++....||+++||.|||+++..+.
T Consensus 258 ~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 258 AVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhchH
Confidence 9999999986 3455677 799999999999999999999999998899999999999999987643
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.06 Aligned_cols=312 Identities=26% Similarity=0.359 Sum_probs=232.1
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC-----C-cEEEcHHHHHhhhhCCCchhhhchhhhCC
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-----N-RIIVGLPAKRQAITNPNNTLYAIKRLIGR 76 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~-~~~vG~~A~~~~~~~~~~~~~~~k~~lg~ 76 (1242)
+.-+||||||+||+++....| .++ ..||+|+|.++ + -+.+|.+|+....+.|.+.. +++-+
T Consensus 2 ~~~~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi-- 68 (333)
T TIGR00904 2 SSDIGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM-- 68 (333)
T ss_pred CceeEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC--
Confidence 345999999999999885433 333 37999999854 2 26799999887655554432 12221
Q ss_pred CCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 77 KYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATK 156 (1242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~ 156 (1242)
.+..+...+.+..+++++........+.....+|+|||++|+..||++++
T Consensus 69 ------------------------------~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~ 118 (333)
T TIGR00904 69 ------------------------------KDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVK 118 (333)
T ss_pred ------------------------------CCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHH
Confidence 11223334555566666665543322222238999999999999999999
Q ss_pred HHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 157 DAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
+|++.||++.+.+++||+|||++|+.... .+..++|+|+||||+|+++++... . ...++..+||++||+.
T Consensus 119 ~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~----~-----~~~~~~~lGG~did~~ 188 (333)
T TIGR00904 119 ESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGG----I-----VVSRSIRVGGDEFDEA 188 (333)
T ss_pred HHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCC----E-----EecCCccchHHHHHHH
Confidence 99999999999999999999999987553 456789999999999999998754 1 1234567999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCcee-----eeeccccccCCCCCeeeEEEEcHHHHHHHHH
Q psy5911 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT-----DINLPYITADKNGPKHLNVKITRSKLESLVE 311 (1242)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~ 311 (1242)
|++++..++.. ... +..||++|+.++..... .+.+.. .+..........|++++|.+++.
T Consensus 189 l~~~l~~~~~~----~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 189 IINYIRRTYNL----LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHhcc----cCC---------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHH
Confidence 99999866531 111 35799999999764221 222211 11011123457899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCc-CCc-c-eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 312 DLISKSLKPCEVALNDAKIDK-SKI-S-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+.++++.+.+.+.++.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999887542 233 3 6999999999999999999999999999999999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=326.52 Aligned_cols=309 Identities=23% Similarity=0.355 Sum_probs=244.3
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCc--EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCCh
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR--IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 721 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~--~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~ 721 (1242)
..+|||+||+++++ +.+|+..++ | .||+|+++.++. +.+|.+|+.+..++|.++... + +.
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi--- 66 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PM--- 66 (335)
T ss_pred CeEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cC---
Confidence 35799999999974 666665443 4 499999985543 579999999988888876442 1 11
Q ss_pred hHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCC--cEEEEecCCCCHHHHHHHHHHH
Q psy5911 722 IVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIE--KAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
....+..-++++.+|++++..++..++..+. .+|||||++|+..||+++.+|+
T Consensus 67 -------------------------~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 67 -------------------------KDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred -------------------------CCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 1112233478899999999998887776554 7999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+.||++++.+++||+|||++|+.... .+..++|+|+||||+|++++.+.. . ...++..+||++||+.|.+
T Consensus 122 ~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~-----~----~~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 122 KNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGG-----V----VSCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCC-----E----EEecCcCCHHHHHHHHHHH
Confidence 99999999999999999999987654 456789999999999999998653 1 1345677999999999999
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----QTDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 955 (1242)
Q Consensus 880 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~ 955 (1242)
++...|+...+ ...||++|+.++... ...+.+.. .+...+....+.+++++|++++.+.+.
T Consensus 192 ~l~~~~~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~ 256 (335)
T PRK13929 192 FVRKKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLL 256 (335)
T ss_pred HHHHHhCcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHH
Confidence 99876542211 258999999998632 11222211 111122346789999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--ccCcc-eEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 956 KSLKPCEVALNDAKID--KSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 956 ~~~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++.+.+.+.|+++... ...++ .|+|+||+|++|.+.+++++.|+.++....||+++||.||+..-
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999998643 35577 69999999999999999999999999988999999999998763
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=321.68 Aligned_cols=314 Identities=26% Similarity=0.359 Sum_probs=237.9
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC-C-cEEEcHHHHHhhhhCCCchhhhchhhhCCCCC
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-N-RIIVGLPAKRQAITNPNNTLYAIKRLIGRKYT 79 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~-~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~ 79 (1242)
|+..+||||||++|+++++.++ .++ .+||+|++..+ + .+++|.+|+......|.+.. +++
T Consensus 7 ~~~~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------- 68 (335)
T PRK13930 7 FSKDIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR------- 68 (335)
T ss_pred hccceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee-------
Confidence 4566999999999999987433 233 25999999853 2 46899999887655554321 111
Q ss_pred ChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 80 DEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 159 (1242)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa 159 (1242)
| +....+...+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+|+
T Consensus 69 -----------p--------------i~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 69 -----------P--------------LKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred -----------c--------------CCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 1 122233345667888888887665544444678999999999999999999999
Q ss_pred HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHH
Q psy5911 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239 (1242)
Q Consensus 160 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~ 239 (1242)
+.+|++.+.+++||+|||++|+.... .....+|||+||||||++++.... ++ ..+...+||.+||+.|.+
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~--------~~-~~~~~~lGG~~id~~l~~ 193 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGG--------IV-YSESIRVAGDEMDEAIVQ 193 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCC--------EE-eecCcCchhHHHHHHHHH
Confidence 99999999999999999999987544 344578999999999999997643 11 245678999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCcee----eeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT----DINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 315 (1242)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~ 315 (1242)
++..++. .+.. ...||++|+.++..... .+.+.. .+...+....+.|++++|++++.+.++
T Consensus 194 ~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~ 258 (335)
T PRK13930 194 YVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQ 258 (335)
T ss_pred HHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHH
Confidence 9987653 2111 25799999999865321 122211 111111234788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCc--CCcce-EEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhh
Q psy5911 316 KSLKPCEVALNDAKIDK--SKISE-IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 316 ~i~~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l 383 (1242)
++.+.+.++|+.+.... ..++. |+|+||+|++|.++++|++.|+.++....+|+++||+|||+.+...
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999999999875332 23454 9999999999999999999999999989999999999999987643
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=308.45 Aligned_cols=309 Identities=27% Similarity=0.384 Sum_probs=229.4
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC-Cc-EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~-~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.++||+||+++++.. .|+..++ .+||+|+|..+ ++ .++|.+|+.+...+|.++... +
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~---------- 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R---------- 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e----------
Confidence 468999999999743 4443333 38999999855 33 589999998876666553211 0
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
|. ....+..-+.+..+|+++........ .....+|+|||++|++.+|++++.|++.|
T Consensus 66 --------pi--------------~~G~i~d~~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~~a 122 (334)
T PRK13927 66 --------PM--------------KDGVIADFDVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESALGA 122 (334)
T ss_pred --------cC--------------CCCeecCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 10 11111122344556666555443332 11248999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
|++.+.+++||+|||++|+.... .+..++|||+||||||+++++... . ...++..+||++||+.|.+++.
T Consensus 123 g~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~----~-----~~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 123 GAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGG----I-----VYSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred CCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCC----e-----EeeCCcCChHHHHHHHHHHHHH
Confidence 99999999999999999988654 355689999999999999997653 1 1334567999999999999998
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce----eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ----TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSL 958 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~ 958 (1242)
+++..... ...||++|+.++.... ..+.+.. .+...+.+..+.|+|++|++++.+.+.++.
T Consensus 193 ~~~~~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~ 257 (334)
T PRK13927 193 RNYNLLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIV 257 (334)
T ss_pred HHhCcCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHH
Confidence 77642211 3478999999875432 2222211 111122345789999999999999999999
Q ss_pred HHHHHHHHhcCCC--ccCcc-eEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 959 KPCEVALNDAKID--KSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 959 ~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+.|.++|++++.. ...++ .|+|+||+|++|.++++|++.|+.++....+|+++||+|||+++..
T Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 258 EAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999988643 22244 5999999999999999999999999999999999999999999765
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=306.28 Aligned_cols=309 Identities=25% Similarity=0.339 Sum_probs=228.0
Q ss_pred ccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC-----C-cEEEcHHHHHHhhhCCcchhhHHHHhcCCCCC
Q psy5911 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-----N-RIIVGLPAKRQAITNPNNTLYAIKRLIGRKYT 719 (1242)
Q Consensus 646 ~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~-----~-~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~ 719 (1242)
+|||+||++|++++..+| .++ ..||+|+|..+ + -+.+|.+|+....+.|.+... ++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCC----
Confidence 699999999998885433 344 37999999844 2 266999998776555554321 11111
Q ss_pred ChhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 720 DEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 720 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
+..+..-+.+..+++++........+.....+|+|||++|+..+|+++++|+
T Consensus 70 ----------------------------~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 70 ----------------------------DGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ----------------------------CCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1111122344455555554443322222238999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+.+|++.+.+++||+|||++|+.... .+..++|+|+||||||+++++... . ...++..+||++||+.|++
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~----~-----~~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGG----I-----VVSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCC----E-----EecCCccchHHHHHHHHHH
Confidence 99999999999999999999987654 456789999999999999998754 1 1335567999999999999
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce-----eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHH
Q psy5911 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ-----TDINLPYITADKNGPKHLNVKITRSKLESLVEDLI 954 (1242)
Q Consensus 880 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~ 954 (1242)
++.+++..... +..||++|+.++.... ..+.+.. .+...+....+.+++++|.+++.+.+
T Consensus 192 ~l~~~~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~ 256 (333)
T TIGR00904 192 YIRRTYNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPV 256 (333)
T ss_pred HHHHHhcccCC-------------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHH
Confidence 99876642111 3579999999875322 1222211 11111223457899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc-cCc-c-eEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 955 SKSLKPCEVALNDAKIDK-SKI-S-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 955 ~~~~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.++.+.+.+.++.+.... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 257 ~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 257 NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999887542 233 3 6999999999999999999999999999999999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=298.77 Aligned_cols=311 Identities=24% Similarity=0.314 Sum_probs=233.3
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC-C-cEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-N-RIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~-~-~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.+++|+||+++++++..+ ..++ .+||+|++... + .+++|.+|+......|.+.-. +
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GIVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CEEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e-----------
Confidence 378999999999988633 2333 25999999752 3 368999998776555544211 0
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
.| +....+..-+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+|++.+
T Consensus 68 -------~p--------------i~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 68 -------RP--------------LKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred -------ec--------------CCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 01 111112223557777888876655543444678999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
|++.+.+++||+|||++|+.... .....+|||+||||||++++.... . ...+...+||.+||+.|.+++.
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~--------~-~~~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGG--------I-VYSESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCC--------E-EeecCcCchhHHHHHHHHHHHH
Confidence 99999999999999999987654 344568999999999999997643 1 1245678999999999999998
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCcee----eEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT----DINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSL 958 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~ 958 (1242)
+++.. +.. ...||++|+.++..... .+.+.. .+...+....+.|++++|++++.+.+.++.
T Consensus 197 ~~~~~----~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~ 261 (335)
T PRK13930 197 RKYNL----LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIV 261 (335)
T ss_pred HHhCC----CCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHH
Confidence 87542 111 25789999999754321 222211 111122335788999999999999999999
Q ss_pred HHHHHHHHhcCCCc--cCcce-EEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhh
Q psy5911 959 KPCEVALNDAKIDK--SKISE-IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 959 ~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l 1023 (1242)
+.+.++++.+.... ..++. |+|+||+|++|.++++|++.|+.++....+|+++||.||++.+...
T Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 262 EAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999999875332 23454 9999999999999999999999999888999999999999998643
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=289.38 Aligned_cols=310 Identities=30% Similarity=0.406 Sum_probs=223.3
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC--cEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN--RIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~--~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
.-+||||||+++.++.-..| .++ + .||+|+++.+. -..+|.+|+....+.|.+.
T Consensus 2 ~~igIDLGT~~t~i~~~~~G--iv~-~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG--IVL-N------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE--EEE-E------EES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred CceEEecCcccEEEEECCCC--EEE-e------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 45899999999998543333 222 2 39999999652 3459999977555444331
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.+..++.+..+...++...+|+++.+.+.......-.+++++||+.-++.+|+++.+|+..
T Consensus 58 -------------------~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 58 -------------------EVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp -------------------EEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred -------------------EEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1222345566777789999999999988764333456899999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
||...+.+++||.|||+..+.+-. .+...+|+|+||||+|++++.... ++.+.. ...||++||++|.+|+
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislgg--------iv~s~s-i~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGG--------IVASRS-IRIGGDDIDEAIIRYI 188 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTE--------EEEEEE-ES-SHHHHHHHHHHHH
T ss_pred cCCCEEEEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCC--------EEEEEE-EEecCcchhHHHHHHH
Confidence 999999999999999999998765 445567779999999999997544 122222 3569999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce----eeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ----TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 317 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i 317 (1242)
.++|.-..+ ...||++|+.+++... ..+.+ ...+...+..-++.|+.+++.+.+.+.+.++
T Consensus 189 r~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v--~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I 253 (326)
T PF06723_consen 189 REKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEV--RGRDLITGLPKSIEITSSEVREAIEPPVDQI 253 (326)
T ss_dssp HHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEE--EEEETTTTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEE--ECccccCCCcEEEEEcHHHHHHHHHHHHHHH
Confidence 999864444 5689999999986532 22333 2222333456789999999999999999999
Q ss_pred HHHHHHHHHHcCCCc-CCc--ceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 318 LKPCEVALNDAKIDK-SKI--SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 318 ~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
.+.++++|+...... .|| ++|+|+||+|+++.+.++|++.++.++....+|.++||.||.....
T Consensus 254 ~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 254 VEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999765432 132 5699999999999999999999999999999999999999987643
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=251.27 Aligned_cols=316 Identities=27% Similarity=0.354 Sum_probs=242.5
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEec--CC--cEEEcHHHHHhhhhCCCchhhhchhhhCCCC
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE--DN--RIIVGLPAKRQAITNPNNTLYAIKRLIGRKY 78 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~~--~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~ 78 (1242)
+..+||||||.|+.|..-..| ++.++ ||+|++.. +. -..+|.+|+...-+.|.+.
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni------------ 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI------------ 64 (342)
T ss_pred cccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc------------
Confidence 567999999999998775333 45544 99999987 22 2458999876544444332
Q ss_pred CChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhc-CCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 79 TDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLN-EKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~-~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
...-+.++..+...++...+|+|+.+.....-+ ....++++.||..-++..|+++++
T Consensus 65 ----------------------~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~e 122 (342)
T COG1077 65 ----------------------VAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKE 122 (342)
T ss_pred ----------------------eEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHH
Confidence 122234556677788999999999998864333 445579999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l 237 (1242)
|++.||...+.++.||.|||+..++.-.....+ +|+|+||||+|++++.+.+...... ..+||+.||+.+
T Consensus 123 a~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~-mvvDIGgGTTevaVISlggiv~~~S---------irv~GD~~De~I 192 (342)
T COG1077 123 AAESAGAREVYLIEEPMAAAIGAGLPIMEPTGS-MVVDIGGGTTEVAVISLGGIVSSSS---------VRVGGDKMDEAI 192 (342)
T ss_pred HHHhccCceEEEeccHHHHHhcCCCcccCCCCC-EEEEeCCCceeEEEEEecCEEEEee---------EEEecchhhHHH
Confidence 999999999999999999999998876644445 5569999999999999876222222 345999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCcee----eeeccccccCCCCCeeeEEEEcHHHHHHHHHHH
Q psy5911 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT----DINLPYITADKNGPKHLNVKITRSKLESLVEDL 313 (1242)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~ 313 (1242)
..|+.++|+--.+ .+.+|++|....+.-.. ...++....+...+..-.++++-+++.+.+++.
T Consensus 193 i~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~ 259 (342)
T COG1077 193 IVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEP 259 (342)
T ss_pred HHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHH
Confidence 9999999876555 34689999987654321 111222222222223456899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCc--CCcce-EEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 314 ISKSLKPCEVALNDAKIDK--SKISE-IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 314 ~~~i~~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
++.|.+.++..|+...... +-++. ++|+||+|.+..+.+.|++..+.++....+|..|||+|+......+.
T Consensus 260 v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 260 LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999866432 22455 99999999999999999999999999999999999999987766543
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=264.05 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=175.4
Q ss_pred eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCC
Q psy5911 109 KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 188 (1242)
Q Consensus 109 ~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~ 188 (1242)
..+...+.++++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 345557889999999999999999989999999999999999999999999999999999999999999999753
Q ss_pred cEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q psy5911 189 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE 268 (1242)
Q Consensus 189 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 268 (1242)
..+|+|+||||+|+++++-.. ++. ..+..+||++||+.|.+.+. ++ ...||
T Consensus 109 -~~~vvDiGggtt~i~i~~~G~--------i~~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE 159 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKKGK--------VIY-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAE 159 (239)
T ss_pred -CcEEEEeCCCcEEEEEEECCe--------EEE-EEeeecchHHHHHHHHHHhC--------CC-----------HHHHH
Confidence 248999999999999986332 222 34567899999998875542 21 36899
Q ss_pred HHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChH
Q psy5911 269 KAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMP 348 (1242)
Q Consensus 269 ~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip 348 (1242)
++|+.++. .+++.+++.++++++...+++.|++. .++.|+|+||+|++|
T Consensus 160 ~~K~~~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ip 208 (239)
T TIGR02529 160 EYKRGHKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFS 208 (239)
T ss_pred HHHHhcCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcch
Confidence 99987531 35577899999999999999999864 367899999999999
Q ss_pred HHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 349 LVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 349 ~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
.+++.+++.|+.++..+.||++++|.|||+
T Consensus 209 gl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 209 GFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 999999999999999999999999999986
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=269.71 Aligned_cols=311 Identities=29% Similarity=0.380 Sum_probs=220.8
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCC-c-EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN-R-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~-~-~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.+|+|+||+++.+.+ +++-.++. .||+|+++.+. + ..+|.+|+....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTE----------------
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc----------------
Confidence 468999999998744 44333442 39999998642 3 458999976554444332
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
.+...+.+..+.-.++...+|+++.+.+.......-.+++++||+.-++.+|+++.+|+..+
T Consensus 58 ------------------~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 58 ------------------EVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------------------EEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------------------EEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 11122334455667888889999988876642334558999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
|...+.++.||.|||+..+.+-... ...+|+|+||||||++++.... ++.+. ....||++||++|.+|++
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i~~~-~g~miVDIG~GtTdiavislgg--------iv~s~-si~~gG~~~DeaI~~~ir 189 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDIFEP-RGSMIVDIGGGTTDIAVISLGG--------IVASR-SIRIGGDDIDEAIIRYIR 189 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--TTSS-S-EEEEEE-SS-EEEEEEETTE--------EEEEE-EES-SHHHHHHHHHHHHH
T ss_pred CCCEEEEecchHHHHhcCCCCCCCC-CceEEEEECCCeEEEEEEECCC--------EEEEE-EEEecCcchhHHHHHHHH
Confidence 9999999999999999999887644 4456669999999999997653 11222 245699999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCcee--eEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT--DINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP 960 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~ 960 (1242)
++|.-..+ ...||++|+.+++.... .-.+.....+...+..-++.|+-+++.+++.+.+.++.+.
T Consensus 190 ~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~ 256 (326)
T PF06723_consen 190 EKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEA 256 (326)
T ss_dssp HHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 99875544 66899999998764221 1122223334445567889999999999999999999999
Q ss_pred HHHHHHhcCCCc-cCc--ceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhh
Q psy5911 961 CEVALNDAKIDK-SKI--SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 961 i~~~l~~~~~~~-~~i--~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
++++|+...... .|| ++|+|+||+|+++.+.++|++.++.++....+|..+||.||.....
T Consensus 257 i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 257 IKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999765332 132 5699999999999999999999999999999999999999987654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=250.99 Aligned_cols=205 Identities=22% Similarity=0.310 Sum_probs=175.7
Q ss_pred eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCC
Q psy5911 749 QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828 (1242)
Q Consensus 749 ~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~ 828 (1242)
..+...+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+...
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~~---- 109 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIKN---- 109 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCCC----
Confidence 3455668899999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred cEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHH
Q psy5911 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE 908 (1242)
Q Consensus 829 ~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 908 (1242)
.+|+|+||||+|+++++... ++. ..+..+||++||+.|.+.+. ++ ..+||
T Consensus 110 --~~vvDiGggtt~i~i~~~G~--------i~~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE 159 (239)
T TIGR02529 110 --GAVVDVGGGTTGISILKKGK--------VIY-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAE 159 (239)
T ss_pred --cEEEEeCCCcEEEEEEECCe--------EEE-EEeeecchHHHHHHHHHHhC--------CC-----------HHHHH
Confidence 48899999999999986332 222 34567899999998876542 11 36899
Q ss_pred HhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchH
Q psy5911 909 KAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMP 988 (1242)
Q Consensus 909 ~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip 988 (1242)
++|+.++. .+++.+++.|+++++.+.+++.|++. .++.|+|+||+|++|
T Consensus 160 ~~K~~~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ip 208 (239)
T TIGR02529 160 EYKRGHKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFS 208 (239)
T ss_pred HHHHhcCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcch
Confidence 99987531 35677899999999999999999865 367899999999999
Q ss_pred HHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 989 LVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 989 ~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
.+++.+++.|+.++..+.||++++|.|||+
T Consensus 209 gl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 209 GFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 999999999999999999999999999986
|
|
| >PRK14148 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=235.44 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc--chhhhHHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN--QTKESEIIFLIF 610 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~--~~~~~~g~~~~~ 610 (1242)
+.+++.+++ .++++|+|..||++|+|||+++|++++++||.++|+++||||+||||||+.+.... ..++.+|++||+
T Consensus 49 l~~l~~e~~-elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~ 127 (195)
T PRK14148 49 IKELEDSCD-QFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTA 127 (195)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHH
Confidence 333444443 35799999999999999999999999999999999999999999999999986542 357999999999
Q ss_pred HHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 611 KLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 611 ~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
++|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+|- ..+++ .-|+.|...
T Consensus 128 k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~---~gtVv~V~qkGY------~l~dRVLRpA~V~Va 193 (195)
T PRK14148 128 KMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFE---DNTIFDVFQKGY------MLNGRIVRAAKVVIV 193 (195)
T ss_pred HHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCC---cCEEEEEeeCCc------EeCCEeeeccEEEeC
Confidence 999999999999999999999999999999987665544 677999999992 22233 347777653
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=245.63 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEE
Q psy5911 114 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVV 193 (1242)
Q Consensus 114 ~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV 193 (1242)
.+.....|+++++.++.+++.++..++++||++|+..+|.++.+|++.||+++..+++||.|++.+|.... .+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~------~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN------GAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC------cEE
Confidence 56778899999999999989889999999999999999999999999999999999999999999886531 488
Q ss_pred EEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHH
Q psy5911 194 YDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIE 273 (1242)
Q Consensus 194 ~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 273 (1242)
+|+||||||+++++-. .+ .. .++..+||++||+.|++++. .+ +.+||++|+.
T Consensus 140 vDIGggtt~i~v~~~g------~~--~~-~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 140 VDIGGGTTGISILKDG------KV--VY-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred EEeCCCcEEEEEEECC------eE--EE-EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 8999999999998532 22 22 24678999999999987752 11 4578999876
Q ss_pred hcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHH
Q psy5911 274 LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353 (1242)
Q Consensus 274 Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~ 353 (1242)
++ +++++.++++|+++++.+.+++.++.. .++.|+|+||+|++|.+++.
T Consensus 192 ~~--------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~ 240 (267)
T PRK15080 192 PK--------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEV 240 (267)
T ss_pred cC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHH
Confidence 42 247788999999999999999999864 57899999999999999999
Q ss_pred HHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 354 VSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 354 l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+++.|+.++..+.+|+.++|.|||++|
T Consensus 241 l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 241 FEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 999999999999999999999999875
|
|
| >PRK14147 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=232.66 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHH
Q psy5911 532 ELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFK 611 (1242)
Q Consensus 532 e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~ 611 (1242)
++.+++.++.. ++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+.+...+..++.+|++||++
T Consensus 26 ~l~~l~~e~~e-lkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k 104 (172)
T PRK14147 26 EVESLRSEIAL-VKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYK 104 (172)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHH
Confidence 34444444433 46999999999999999999999999999999999999999999999998876556789999999999
Q ss_pred HHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 612 LIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 612 ~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
+|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.++|+| ...+.+ .-|+.|.+.
T Consensus 105 ~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~---~g~Vv~v~qkG------Y~l~~RvLRpA~V~Va 169 (172)
T PRK14147 105 QLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVA---PGHVVQVFQKG------YLLNERLLRPALVVVA 169 (172)
T ss_pred HHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCC---cCEEEEEeeCC------cEeCCEeccCceEEeC
Confidence 99999999999999999999999999999987655544 66799999999 222333 337777654
|
|
| >PRK14153 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=232.18 Aligned_cols=166 Identities=23% Similarity=0.337 Sum_probs=130.0
Q ss_pred CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcch
Q psy5911 506 GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPIT 585 (1242)
Q Consensus 506 ~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~ 585 (1242)
+|-+.++.+++.++.+ ....+. ++.+++.++. .++++|+|..||++|+|||+++|++++++||.++|+++||||+
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~---ei~~l~~e~~-elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~ 93 (194)
T PRK14153 19 SGSSAEEAEELKEEPE-DSTADS---ETEKCREEIE-SLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVT 93 (194)
T ss_pred cCCCHHHHHHHhhhhh-cccchH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4566677666654443 222222 2333344433 3469999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCC--cchhhhHHHHHHHHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 586 DSMEMFAKNFDS--NQTKESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 586 d~~e~a~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|||+||+++... +..++.+|++||+++|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+|
T Consensus 94 DnLerAl~~~~~~~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~---~gtVi~V~qkG 170 (194)
T PRK14153 94 DNFERALESARTAEDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVP---DNTIVDVCKPG 170 (194)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCC---cCEEEEEeeCC
Confidence 999999987653 3468999999999999999999999999999999999999999976655444 67799999999
Q ss_pred cceEEecCCCCc-ccceEEEEec
Q psy5911 664 KPQVIENSEGGR-TTPSVVGYTE 685 (1242)
Q Consensus 664 ~~~ii~~~~g~~-~~PS~v~~~~ 685 (1242)
= ..+.+ .-|+.|.+..
T Consensus 171 Y------~l~dRVLRPA~V~Vak 187 (194)
T PRK14153 171 Y------ALNSKVIRPAMVSVAR 187 (194)
T ss_pred c------EeCCEEeeCcEEEECC
Confidence 2 22223 3477777653
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=231.56 Aligned_cols=314 Identities=25% Similarity=0.351 Sum_probs=238.6
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC--Cc--EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCC
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED--NR--IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 720 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~--~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d 720 (1242)
.+|+|+||.|+.+.+-.+| ++.+ -||+|++... .. ..+|.+|+...-+.|.+..
T Consensus 8 diGIDLGTanTlV~~k~kg---IVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~------------- 65 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV------------- 65 (342)
T ss_pred cceeeecccceEEEEcCce---EEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCce-------------
Confidence 5799999999998776333 3333 4999999862 22 3489988755433333321
Q ss_pred hhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhC-CCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 721 EIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLN-EKIEKAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
..-.+.+..+...++...+|+|+.+......+ ....++++.||..-++-.|+++++|+
T Consensus 66 ---------------------aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~ 124 (342)
T COG1077 66 ---------------------AIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA 124 (342)
T ss_pred ---------------------EEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence 11123345566778889999999888764333 34457999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+.||...+.++.||.|||+..++.-....+++ |||+||||+|++++.+.... ++....+||+.||+.+.+
T Consensus 125 ~~aGa~~V~lieEp~aAAIGaglpi~ep~G~m-vvDIGgGTTevaVISlggiv---------~~~Sirv~GD~~De~Ii~ 194 (342)
T COG1077 125 ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSM-VVDIGGGTTEVAVISLGGIV---------SSSSVRVGGDKMDEAIIV 194 (342)
T ss_pred HhccCceEEEeccHHHHHhcCCCcccCCCCCE-EEEeCCCceeEEEEEecCEE---------EEeeEEEecchhhHHHHH
Confidence 99999999999999999999988766555564 45999999999999987521 122244699999999999
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce---e-eEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHH
Q psy5911 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ---T-DINLPYITADKNGPKHLNVKITRSKLESLVEDLIS 955 (1242)
Q Consensus 880 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~-~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~ 955 (1242)
|+.++|+--.+ ...+|++|......-. . ...++....+.-.+..-.++++-+++.+.+++.++
T Consensus 195 yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~ 261 (342)
T COG1077 195 YVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLN 261 (342)
T ss_pred HHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHH
Confidence 99999886555 3468899988764322 1 12222222233334556789999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--ccCcce-EEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 956 KSLKPCEVALNDAKID--KSKISE-IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 956 ~~~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
.|.+.++..|+..... .+-++. ++|+||+|.+..+.+.|++..+.++....+|-.|||.|+......+.
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999986533 222555 99999999999999999999999999999999999999988776543
|
|
| >PRK14145 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=231.19 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=107.4
Q ss_pred HHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHHHHHHHHhccc
Q psy5911 543 ILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNI 622 (1242)
Q Consensus 543 ~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 622 (1242)
.+.++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+++.. +..++.+|++||+++|.++|+++||
T Consensus 63 el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~-~~~~l~~Gv~mi~k~l~~vL~k~GV 141 (196)
T PRK14145 63 EYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG-DYNSLKEGIELIYRQFKKILDKFGV 141 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356999999999999999999999999999999999999999999999998843 3467899999999999999999999
Q ss_pred eecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 623 KQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 623 ~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
++|++.|++|||++||||++.+..+.+ .++++.|+|+|
T Consensus 142 e~I~~~Ge~FDP~~HEAv~~~~~~~~~---~gtVv~V~qkG 179 (196)
T PRK14145 142 KEIEAEGQIFDPYKHHAVMQEEVEGKQ---PNEIIEVFQKG 179 (196)
T ss_pred EEeCCCCCCCCchhhheeeeeCCCCCC---cCEEEEEeeCC
Confidence 999999999999999999987665554 67799999999
|
|
| >PRK14161 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=227.11 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc----chhhhHHHHHH
Q psy5911 534 VKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN----QTKESEIIFLI 609 (1242)
Q Consensus 534 ~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~----~~~~~~g~~~~ 609 (1242)
.+++.+++ .++++|+|..||++|+|||+++|++++++||.++|+++||||+|||+||+.+.+.+ ..++.+|++||
T Consensus 29 ~~l~~e~~-elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi 107 (178)
T PRK14161 29 TALKAEIE-ELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMT 107 (178)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 33444443 34699999999999999999999999999999999999999999999999986543 24789999999
Q ss_pred HHHHHHHHHhccceeccc-CCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 610 FKLIKKFYKKFNIKQISE-TGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 610 ~~~~~~~~~~~g~~~i~~-~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
+++|.++|+++||++|++ .|++|||++||||++.+..+.+ .++++.|+|+| ...+++ .-|+.|...
T Consensus 108 ~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~---~gtVi~v~q~G------Y~l~dRVLRpA~V~Va 175 (178)
T PRK14161 108 KDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHA---PNSIITLMQSG------YKIRDRLLRPATVQVV 175 (178)
T ss_pred HHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCC---cCEEEEEeeCC------cEeCCEeecCceEEeC
Confidence 999999999999999998 6999999999999987655444 67799999999 222333 337777654
|
|
| >PRK14139 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=229.02 Aligned_cols=141 Identities=25% Similarity=0.384 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKL 612 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~ 612 (1242)
+.+++.++. .++++|+|..||++|+|||+++|++++++|+.++|+++||||+|||+||+.+.+.+..++.+|++||+++
T Consensus 41 l~~le~e~~-elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~ 119 (185)
T PRK14139 41 LAEAEAKAA-ELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQ 119 (185)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 334444443 3579999999999999999999999999999999999999999999999988766667899999999999
Q ss_pred HHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 613 IKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 613 ~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
|.++|+++||++|++.|++|||++||||++.+. +. ..++++.|+|+| ...+++ .-|+.|.+.
T Consensus 120 l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~---~~gtVi~V~qkG------Y~l~dRVLRPA~V~Va 182 (185)
T PRK14139 120 LTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQ---EPNTVVAVLQKG------YTIADRVLRPALVTVA 182 (185)
T ss_pred HHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CC---CcCEEEEEeeCC------cEeCCEeccCceEEeC
Confidence 999999999999999999999999999997664 32 467899999999 222333 347777654
|
|
| >PRK14159 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=226.79 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=105.9
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc--chhhhHHHHHHHHHHHHHHHhcc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN--QTKESEIIFLIFKLIKKFYKKFN 621 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~g 621 (1242)
++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+++...+ ..++.+|++||+++|.++|+++|
T Consensus 42 lkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~k~G 121 (176)
T PRK14159 42 LKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHDEISLKIKEGVQNTLDLFLKKLEKHG 121 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4689999999999999999999999999999999999999999999999876543 35789999999999999999999
Q ss_pred ceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 622 ~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|++|++.| +|||++||||++.+..+.+ .++++.|+|+|
T Consensus 122 v~~I~~~G-~FDP~~HEAv~~~~~~~~~---~gtVv~v~qkG 159 (176)
T PRK14159 122 VALIKEEK-EFDPNLHEAMFHVDSENHQ---SGEVVQVLQKG 159 (176)
T ss_pred CEecCCCC-CCChHHhhhhheeCCCCCC---cCeEEEEeeCC
Confidence 99999999 6999999999987765544 67799999999
|
|
| >PRK14151 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=228.16 Aligned_cols=127 Identities=17% Similarity=0.305 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc---chhhhHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN---QTKESEIIFLI 609 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~---~~~~~~g~~~~ 609 (1242)
+.+++.++. .++++|+|..||++|+|||+++|++++++|+.++|+++||||+||||||+++...+ ..++.+|++||
T Consensus 29 i~~le~e~~-el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi 107 (176)
T PRK14151 29 VQELEEQLA-AAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELT 107 (176)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHH
Confidence 344444443 34689999999999999999999999999999999999999999999999875432 35789999999
Q ss_pred HHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 610 FKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 610 ~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
+++|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+|
T Consensus 108 ~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~---~gtI~~v~qkG 158 (176)
T PRK14151 108 LKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVE---PNSVLKVFQKG 158 (176)
T ss_pred HHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCC---cCeEEEEeeCC
Confidence 9999999999999999999999999999999987665544 67799999999
|
|
| >PRK14162 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=230.36 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=106.6
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc--chhhhHHHHHHHHHHHHHHHhcc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN--QTKESEIIFLIFKLIKKFYKKFN 621 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~g 621 (1242)
++++|+|.+||++|+|||+++|++++++||+++|+++||||+|||+||+.+...+ ..++.+|++||+++|.++|+++|
T Consensus 58 lkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL~~~G 137 (194)
T PRK14162 58 LEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKALKDHG 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5699999999999999999999999999999999999999999999999876543 36799999999999999999999
Q ss_pred ceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 622 ~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|++|++.|++|||++||||++.+.. +....++++.|+|+|
T Consensus 138 V~~I~~~G~~FDP~~HEAv~~~~~~--~~~~~gtVv~v~qkG 177 (194)
T PRK14162 138 VTEIKADGEKFDPTLHQAVQTVAAE--NDDQKDHVVQVLQKG 177 (194)
T ss_pred CEEeCCCCCCCChhHhhhheeecCC--CCCCcCEEEEEeeCC
Confidence 9999999999999999999976542 122367899999999
|
|
| >PRK14155 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=232.72 Aligned_cols=144 Identities=15% Similarity=0.204 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc-----chhhhHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN-----QTKESEIIF 607 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~-----~~~~~~g~~ 607 (1242)
+.+++.++. .++++|+|..||++|+|||+++|++++++|++++|+++||||+||||||+.+...+ ..++.+|++
T Consensus 22 l~~le~e~~-elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gve 100 (208)
T PRK14155 22 IEALKAEVA-ALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVE 100 (208)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHH
Confidence 334444443 34699999999999999999999999999999999999999999999999986532 357899999
Q ss_pred HHHHHHHHHHHhccceeccc-CCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCC-CcccceEEEEec
Q psy5911 608 LIFKLIKKFYKKFNIKQISE-TGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEG-GRTTPSVVGYTE 685 (1242)
Q Consensus 608 ~~~~~~~~~~~~~g~~~i~~-~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g-~~~~PS~v~~~~ 685 (1242)
||+++|.++|+++||++|++ .|++|||++||||++.+..+.+ .++++.|+|+|= ..+ +-.-|+.|.+..
T Consensus 101 mi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~---~gtVi~V~qkGY------~l~dRVLRPA~V~Vak 171 (208)
T PRK14155 101 MTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVA---AGGVLQVMQAGY------ELMGRLVRPAMVAVAA 171 (208)
T ss_pred HHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCC---cCeEEEEeeCCe------EeCCEeeccceEEECC
Confidence 99999999999999999998 7999999999999987765555 677999999992 222 334488888864
Q ss_pred C
Q psy5911 686 D 686 (1242)
Q Consensus 686 ~ 686 (1242)
.
T Consensus 172 ~ 172 (208)
T PRK14155 172 K 172 (208)
T ss_pred C
Confidence 3
|
|
| >PRK14141 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=232.28 Aligned_cols=143 Identities=17% Similarity=0.286 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC--------cchhhhH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS--------NQTKESE 604 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~--------~~~~~~~ 604 (1242)
+.+++.++. .++++|+|.+||++|+|||+++|++++++||+++|+++||||+||||||+++... ...++.+
T Consensus 40 i~~le~e~~-elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~e 118 (209)
T PRK14141 40 LEALKAENA-ELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIE 118 (209)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHH
Confidence 333333433 3468999999999999999999999999999999999999999999999987543 2357999
Q ss_pred HHHHHHHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEE
Q psy5911 605 IIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGY 683 (1242)
Q Consensus 605 g~~~~~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~ 683 (1242)
|++||+++|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+| ...+.+ .-|+.|.+
T Consensus 119 Gv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~---~gtVv~V~qkG------Y~l~dRVLRpA~V~V 189 (209)
T PRK14141 119 GVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVP---NNTVVQVVQAG------YTIGERVLRPAMVGV 189 (209)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCC---cCEEEEEeeCC------cEeCCEeecccEEEE
Confidence 999999999999999999999999999999999999976654443 67899999999 222333 34888877
Q ss_pred ec
Q psy5911 684 TE 685 (1242)
Q Consensus 684 ~~ 685 (1242)
..
T Consensus 190 sk 191 (209)
T PRK14141 190 AK 191 (209)
T ss_pred CC
Confidence 64
|
|
| >PRK10325 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-26 Score=232.10 Aligned_cols=132 Identities=23% Similarity=0.344 Sum_probs=115.0
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC---cchhhhHHHHHHHHHHHHHHHhc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS---NQTKESEIIFLIFKLIKKFYKKF 620 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~ 620 (1242)
++++|+|..|+++|+|||+++|++++++||.++|+++||||+||||||+++.+. ...++.+|++||+++|.++|+++
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l~~~L~~~ 137 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRKF 137 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999999999999999999999987542 34689999999999999999999
Q ss_pred cceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 621 NIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 621 g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
||++|++.|++|||++||||++.+..+.+ .++++.|+|+| ...+.+ .-|+.|.+.
T Consensus 138 Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~---~~~Vv~v~qkG------Y~l~drvlRpA~V~Vs 193 (197)
T PRK10325 138 GVEVIAETNVPLDPNVHQAIAMVESDDVA---PGNVLGIMQKG------YTLNGRTIRAAMVTVA 193 (197)
T ss_pred cCeeeCCCCCCCChhHhceeeeeCCCCCC---cCeEEEEeeCC------cEeCCEeccCceEEeC
Confidence 99999999999999999999987665554 67799999999 222333 347777664
|
|
| >PRK14158 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-26 Score=228.79 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=107.1
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC-cchhhhHHHHHHHHHHHHHHHhccc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS-NQTKESEIIFLIFKLIKKFYKKFNI 622 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~g~ 622 (1242)
++++|+|..||++|+|||+++|++++++||.++|+++||||+||||||+.+.+. +..++.+|++||+++|.++|+++||
T Consensus 59 l~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~vLek~Gv 138 (194)
T PRK14158 59 NWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKKFGV 138 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 469999999999999999999999999999999999999999999999987654 3467999999999999999999999
Q ss_pred eeccc-CCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 623 KQISE-TGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 623 ~~i~~-~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
++|++ .|++|||++||||++.+..+.+ .++|+.|+|+|
T Consensus 139 ~~I~~~~G~~FDP~~HEAv~~~~~~~~~---~gtVv~v~qkG 177 (194)
T PRK14158 139 TPVEAEKGTPFDPAYHQAMCQVESAEQE---PNTVVAVFQKG 177 (194)
T ss_pred EEecCCCCCCCChHHhhhheeecCCCCC---cCEEEEEeeCC
Confidence 99997 7999999999999976654444 67899999999
|
|
| >PRK14163 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-26 Score=228.81 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKL 612 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~ 612 (1242)
+.+++.++. .++++|+|..||++|+|||++||++++++|+.++|+++||||+|||+||+.+. .+.+|++||+++
T Consensus 49 l~~l~~e~~-el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~-----~l~~Gv~mi~k~ 122 (214)
T PRK14163 49 LDQVRTALG-ERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG-----ELVGGFKSVAES 122 (214)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch-----hHHHHHHHHHHH
Confidence 344444443 34699999999999999999999999999999999999999999999999874 488999999999
Q ss_pred HHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEec
Q psy5911 613 IKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYTE 685 (1242)
Q Consensus 613 ~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~~ 685 (1242)
|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+| ...+.| .-|+.|.+..
T Consensus 123 l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~---~gtVv~v~qkG------Y~l~~RVLRPA~V~Vsk 187 (214)
T PRK14163 123 LETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVT---ETTCVAILQPG------YRIGERTIRPARVAVAE 187 (214)
T ss_pred HHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCC---cCEEEEEeeCC------cCcCCEeccCceEEECC
Confidence 9999999999999999999999999999987665554 67799999999 233333 3488887764
|
|
| >PRK14140 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=227.63 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=107.3
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc--chhhhHHHHHHHHHHHHHHHhcc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN--QTKESEIIFLIFKLIKKFYKKFN 621 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~g 621 (1242)
++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+++.+.+ ..++.+|++||+++|.++|+++|
T Consensus 56 lkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~k~G 135 (191)
T PRK14140 56 LEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALKKEG 135 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5799999999999999999999999999999999999999999999999976543 36789999999999999999999
Q ss_pred ceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 622 ~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|++|++.|++|||++||||++.+..+. ..++++.|+|+|
T Consensus 136 V~~i~~~Ge~FDP~~HEAv~~~~~~~~---~~gtVv~V~qkG 174 (191)
T PRK14140 136 VEVIEAVGEQFDPNLHQAVMQDEDEDF---ESNEVVEELQKG 174 (191)
T ss_pred CEeeCCCCCCCChHHhccceeeCCCCC---CcCeEEEEeeCC
Confidence 999999999999999999997665444 467799999999
|
|
| >PRK14150 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-26 Score=229.69 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=107.5
Q ss_pred HHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC---cchhhhHHHHHHHHHHHHHHHh
Q psy5911 543 ILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS---NQTKESEIIFLIFKLIKKFYKK 619 (1242)
Q Consensus 543 ~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~---~~~~~~~g~~~~~~~~~~~~~~ 619 (1242)
.++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+++... ...++.+|++||+++|.++|++
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~L~~ 135 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLKSLLDTVAK 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999986542 2367999999999999999999
Q ss_pred ccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 620 FNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 620 ~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
+||++|++.|++|||++||||++.+..+.+ .++++.|+|+|
T Consensus 136 ~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~---~gtI~~v~q~G 176 (193)
T PRK14150 136 FGVEVVGPVGEPFNPEVHQAISMQESEDHE---PNTVMMVMQKG 176 (193)
T ss_pred CCCeeeCCCCCCCCHhHcceeeeeCCCCCC---cCEEEEEeeCC
Confidence 999999999999999999999987665544 67799999999
|
|
| >COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-26 Score=230.29 Aligned_cols=143 Identities=20% Similarity=0.312 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcc---hhhhHHHHH
Q psy5911 532 ELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQ---TKESEIIFL 608 (1242)
Q Consensus 532 e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~---~~~~~g~~~ 608 (1242)
++.++++++++ +++.|+|..|+++|+|||++++++++++||+++|+.+||||+|||||||.+.+.+. .++.+|++|
T Consensus 44 ~i~~Le~q~~e-~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem 122 (193)
T COG0576 44 EIAELEAQLEE-LKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEM 122 (193)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 44555555544 56999999999999999999999999999999999999999999999988754422 369999999
Q ss_pred HHHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 609 IFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 609 ~~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
|+++|.++|.++||++|++.|+.|||++||||++.+..+. ..++++.|+|+| ...++| .-|+.|...
T Consensus 123 ~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~---~~~tVv~v~qkG------Y~l~dRVLRpA~V~Va 190 (193)
T COG0576 123 TLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDV---EPNTVVEVLQKG------YKLNDRVLRPAMVKVA 190 (193)
T ss_pred HHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCC---CCCeEEEEeecC------eeeCCEeccceEEEEe
Confidence 9999999999999999999999999999999997655444 478899999999 222333 448888765
|
|
| >PRK14144 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-26 Score=225.78 Aligned_cols=131 Identities=27% Similarity=0.365 Sum_probs=113.2
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc-chhhhHHHHHHHHHHHHHHHhccc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN-QTKESEIIFLIFKLIKKFYKKFNI 622 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~g~ 622 (1242)
++++|+|..|+++|+|||+++|++++++||+++|+++||||+|||+||+.+...+ ..++.+|++||+++|.++|+++||
T Consensus 64 lkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~~L~k~GV 143 (199)
T PRK14144 64 NWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKNSDPSMHEGLELTMKLFLDALQKFDV 143 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHcccccchhHHHHHHHHHHHHHHHHHHHCCC
Confidence 4699999999999999999999999999999999999999999999999876542 357899999999999999999999
Q ss_pred eecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEE
Q psy5911 623 KQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGY 683 (1242)
Q Consensus 623 ~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~ 683 (1242)
++|++.|++|||++||||++.+..+.+ .++++.|+|+| ...+.+ .-|+.|.+
T Consensus 144 ~~I~~~G~~FDP~~HEAv~~~~~~~~~---~gtVv~V~qkG------Y~l~dRVLRpA~V~V 196 (199)
T PRK14144 144 EQIDPLGQTFDPQQHEAMSMQPAPGAP---PNSVITVFQKG------YKLSDRVIRPARVIV 196 (199)
T ss_pred EEeCCCCCCCChhHhceeeeeCCCCCC---cCeEEEEeeCC------cEECCEEecccEEEe
Confidence 999999999999999999987665444 67799999999 222233 33776655
|
|
| >PRK14146 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=230.41 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC--cchhhhHHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS--NQTKESEIIFLIF 610 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~--~~~~~~~g~~~~~ 610 (1242)
+.+++.++. .++++|+|..|+++|+|||+++|++++++||+++|+++||||+|||+||+.+... +..++.+|++||+
T Consensus 63 l~~l~~e~~-el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~ 141 (215)
T PRK14146 63 LDNAKKEIE-SLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMIL 141 (215)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344444443 3569999999999999999999999999999999999999999999999987543 3467999999999
Q ss_pred HHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecC-CCCcccceEEEEec
Q psy5911 611 KLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENS-EGGRTTPSVVGYTE 685 (1242)
Q Consensus 611 ~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~-~g~~~~PS~v~~~~ 685 (1242)
++|.++|+++||++|++.|++|||++||||++.+..+.+ .++++.|+|+|- .+... ++.-.-|+.|.+..
T Consensus 142 k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~---~g~Vv~v~qkGY--~l~~r~~~RvLRpA~V~Vak 212 (215)
T PRK14146 142 KEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYS---EETVIDVYQAGY--YYKENEDKFTLRPARVRIGK 212 (215)
T ss_pred HHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCC---cCEEEEEeeCCe--EeCCccCCeeccCceEEeCC
Confidence 999999999999999999999999999999987665554 677999999992 12110 11245588887653
|
|
| >PRK14160 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=227.49 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=105.6
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHHHHHHHHhccce
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIK 623 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 623 (1242)
++++|+|..|+++|+|||++|+++++++||.++|+++||||+|||+||+++... ..++++|++||+++|.++|+++||+
T Consensus 80 lkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~~-~~~l~~Gv~mi~kql~~vL~k~GVe 158 (211)
T PRK14160 80 LKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEGS-VEDLKKGIEMTVKQFKTSLEKLGVE 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHCCCE
Confidence 579999999999999999999999999999999999999999999999987443 3579999999999999999999999
Q ss_pred ecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 624 QISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 624 ~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
+|++.| +|||++||||++.+..+.+ .++++.|+|+|
T Consensus 159 ~I~~~G-~FDP~~HEAv~~~~~~e~~---~gtVveV~qkG 194 (211)
T PRK14160 159 EISTEG-EFDPNLHNAVMHVEDENYG---ENEIVEVFQKG 194 (211)
T ss_pred EeCCCC-CCChHHhceeeeeCCCCCC---cCeEEEEeeCC
Confidence 999999 8999999999987655444 67799999999
|
|
| >PRK14154 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=227.17 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC---cchhhhHHHHH
Q psy5911 532 ELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS---NQTKESEIIFL 608 (1242)
Q Consensus 532 e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~---~~~~~~~g~~~ 608 (1242)
++.++++++. .++++|+|..||++|+|||++||++++++||.++|+++||||+|||+||+.+... ...++.+||+|
T Consensus 60 el~~le~e~~-elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvem 138 (208)
T PRK14154 60 QLTRMERKVD-EYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSL 138 (208)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHH
Confidence 3344444443 3469999999999999999999999999999999999999999999999986432 24689999999
Q ss_pred HHHHHHHHHHhccceeccc-CCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 609 IFKLIKKFYKKFNIKQISE-TGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 609 ~~~~~~~~~~~~g~~~i~~-~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|+++|.++|+++||++|++ .|++|||++||||++.+..+.+ .++++.|+|+|
T Consensus 139 i~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~---~gtVveV~qkG 191 (208)
T PRK14154 139 TLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAK---PDTIIQVLQKG 191 (208)
T ss_pred HHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCC---cCEEEEEeeCC
Confidence 9999999999999999998 5999999999999976655544 56799999999
|
|
| >PRK14149 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=223.23 Aligned_cols=141 Identities=19% Similarity=0.229 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC--cchhhhHHHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS--NQTKESEIIFLIF 610 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~--~~~~~~~g~~~~~ 610 (1242)
+.+++.++. .++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+.+... +..++.+|++||+
T Consensus 45 ~~~l~~e~~-elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~ 123 (191)
T PRK14149 45 KEDFELKYK-EMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTM 123 (191)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHH
Confidence 344444443 3469999999999999999999999999999999999999999999999987654 3357999999999
Q ss_pred HHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 611 KLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 611 ~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
++|.++|+++||++|++.| +|||++||||++.+..+. ..++++.|+|+|= ..+.+ .-|+.|...
T Consensus 124 k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~---~~gtVv~V~QkGY------~l~dRVLRPA~V~Va 188 (191)
T PRK14149 124 EKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEK---ENGKIVQVLQQGY------KYKGRVLRPAMVSIA 188 (191)
T ss_pred HHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCC---CcCEEEEEeeCCc------EeCCEEeeccEEEeC
Confidence 9999999999999999998 599999999997665443 4678999999992 22233 337777664
|
|
| >PRK14143 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=229.19 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=115.0
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC---cchhhhHHHHHHHHHHHHHHHhc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS---NQTKESEIIFLIFKLIKKFYKKF 620 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~ 620 (1242)
++++|+|..|+++|+|||++||++++++||+++|+++||||+|||+||+.+... ....+.+|++||+++|.++|+++
T Consensus 86 lkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~k~ 165 (238)
T PRK14143 86 LNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKRL 165 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999999999999999999999987543 23578999999999999999999
Q ss_pred cceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEec
Q psy5911 621 NIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYTE 685 (1242)
Q Consensus 621 g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~~ 685 (1242)
||++|++.|++|||++||||++.+..+.+ .++++.++|+| ...+.| .-|+.|....
T Consensus 166 GV~~i~~~G~~FDP~~HEAv~~~~~~~~~---~gtVv~v~qkG------Y~l~~RVLRpA~V~Vsk 222 (238)
T PRK14143 166 GVSPMRVVGQEFDPNLHEAVLREPSDEHP---EDVVLEELQRG------YHLGGRVLRHAMVKVSM 222 (238)
T ss_pred CCeeeCCCCCCCChHHhheeeeecCCCCC---cCeEEEEeeCC------ceeCCEecccceEEECC
Confidence 99999999999999999999987765554 67799999999 222333 3477777753
|
|
| >PRK14157 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=221.08 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHH
Q psy5911 529 KFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFL 608 (1242)
Q Consensus 529 ~~~e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~ 608 (1242)
...++.+++.++.+ ++++|+|..||++|+|||++||++++++|++++|+++||||+|||+||+.+.. +.+|++|
T Consensus 82 ~~~~l~~le~e~~e-~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~-----~~~~~~~ 155 (227)
T PRK14157 82 TLTPLGQAKKEAAE-YLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSE-----MDDSFKA 155 (227)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc-----cchHHHH
Confidence 34455555555544 46999999999999999999999999999999999999999999999998753 4579999
Q ss_pred HHHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 609 IFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 609 ~~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
|+++|.++|+++||++|++.|++|||++||||++.+..+.. .++|+.|+|+| ...+.| .-|+.|.+.
T Consensus 156 i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~---~gtVi~V~QkG------Y~l~dRVLRPA~V~Va 223 (227)
T PRK14157 156 VAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAE---KETVDTVVEAG------YRIGDRVIRAARVVVA 223 (227)
T ss_pred HHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCC---cCEEEEEeeCC------ceeCCEeccCceEEeC
Confidence 99999999999999999999999999999999987665544 57799999999 222333 347777664
|
|
| >PRK14156 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=211.22 Aligned_cols=126 Identities=13% Similarity=0.193 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHH
Q psy5911 532 ELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFK 611 (1242)
Q Consensus 532 e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~ 611 (1242)
++.+++.++. .++++|+|..|+++|+|||+++|++++++||.++|+++||||+|||+||+++... ..++.+|++||++
T Consensus 35 ~l~~l~~e~~-elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-~~~l~~Gv~mi~k 112 (177)
T PRK14156 35 ELELANERAD-EFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL-TDDVKKGLEMVQE 112 (177)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc-chhHHHHHHHHHH
Confidence 3344444443 3569999999999999999999999999999999999999999999999987543 3578999999999
Q ss_pred HHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 612 LIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 612 ~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
+|.++|+++||++|++. +|||++||||++.+.. +....++++.++|+|
T Consensus 113 ~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~--~~~~~gtVv~V~qkG 160 (177)
T PRK14156 113 SLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPAD--DEHPADSIAQVFQKG 160 (177)
T ss_pred HHHHHHHHCCCeecCCC--CCChhHhhcceeecCC--CCCCcCEEEEEeeCC
Confidence 99999999999999985 9999999999975532 112367899999999
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=228.00 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEE
Q psy5911 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVV 833 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV 833 (1242)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.... .+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~------~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN------GAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC------cEE
Confidence 57778899999999999989889999999999999999999999999999999999999999999886531 478
Q ss_pred EeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhh
Q psy5911 834 YDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIE 913 (1242)
Q Consensus 834 ~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 913 (1242)
+|+||||||+++++-.. + .. .++..+||++||+.|.+++. .+ +.+||++|+.
T Consensus 140 vDIGggtt~i~v~~~g~------~--~~-~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 140 VDIGGGTTGISILKDGK------V--VY-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred EEeCCCcEEEEEEECCe------E--EE-EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 89999999999985322 2 22 24678999999999987752 11 4678888886
Q ss_pred ccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHH
Q psy5911 914 LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 993 (1242)
Q Consensus 914 Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~ 993 (1242)
++ +++++.++++|.++++.+.+++.++.. .++.|+|+||+|++|.+++.
T Consensus 192 ~~--------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~ 240 (267)
T PRK15080 192 PK--------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEV 240 (267)
T ss_pred cC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHH
Confidence 42 246788999999999999999999864 57899999999999999999
Q ss_pred HHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 994 VSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 994 l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
+++.|+.++....+|+.++|.|||++|
T Consensus 241 l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 241 FEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 999999999999999999999999875
|
|
| >PRK14142 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=214.40 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=109.2
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHHHHHHHHhccce
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIK 623 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 623 (1242)
++++|+|..||++|+|||++||++++++||+++|+++||||+||||||+++...+. ++++||+++|.++|+++||+
T Consensus 52 lkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~~----~~v~~I~kqL~~iLek~GVe 127 (223)
T PRK14142 52 LTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLES----GPLKSVADKLDSALTGLGLV 127 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhcccccc----HHHHHHHHHHHHHHHHCCCE
Confidence 35889999999999999999999999999999999999999999999998764332 46899999999999999999
Q ss_pred ecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEec
Q psy5911 624 QISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYTE 685 (1242)
Q Consensus 624 ~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~~ 685 (1242)
+|++.|++|||++||||++.+..+. ...++|+.|+|+| ...+.+ .-|+.|....
T Consensus 128 ~I~~~Ge~FDP~~HEAv~~ve~~e~--~~~~tVveV~QkG------YkL~dRVLRPA~V~Vsk 182 (223)
T PRK14142 128 AFGAEGEDFDPVLHEAVQHEGDGGQ--GSKPVIGTVMRQG------YQLGEQVLRHALVGVVD 182 (223)
T ss_pred EeCCCCCCCChhhhceeeeecCCCC--CCCCEEEEEecCC------cEeCCEeccCceEEECC
Confidence 9999999999999999997554332 2345799999999 222333 3488877753
|
|
| >PRK14164 heat shock protein GrpE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=210.87 Aligned_cols=135 Identities=18% Similarity=0.232 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHH-HHHHHH
Q psy5911 533 LVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEI-IFLIFK 611 (1242)
Q Consensus 533 ~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g-~~~~~~ 611 (1242)
+.+++.++.+ ++++|+|..|+++|+|||++||++++++|++++|+++||||+|||+||+++.+. .+| ++||++
T Consensus 79 ~~~le~el~e-l~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-----~~g~l~~i~~ 152 (218)
T PRK14164 79 ASTVEAQLAE-RTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDL-----NEGPLKAFSD 152 (218)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-----cccHHHHHHH
Confidence 3444444433 358899999999999999999999999999999999999999999999987543 245 899999
Q ss_pred HHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCc-ccceEEEEe
Q psy5911 612 LIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGR-TTPSVVGYT 684 (1242)
Q Consensus 612 ~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~-~~PS~v~~~ 684 (1242)
+|.++|+++||++|++.|++|||++||||++.+.. + .++++.|+|+| ...+.| .-|+.|.+.
T Consensus 153 ~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~--~---~~~V~~V~qkG------Y~l~dRVLRPA~V~Va 215 (218)
T PRK14164 153 KLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSG--D---EKVLGTVLRKG------YRMGDRVLRTAMVIIA 215 (218)
T ss_pred HHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCC--C---CCEeeEEeeCC------cEECCEeccCceEEeC
Confidence 99999999999999999999999999999976542 2 35688899999 222333 337777654
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=219.02 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcc
Q psy5911 150 SQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 229 (1242)
Q Consensus 150 ~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lG 229 (1242)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||+|++++.-.. +.. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-~~~~~~~vvDiG~gtt~i~i~~~g~------~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-EKELGVCLIDIGGGTTDIAVYTGGS------IRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-hhcCCEEEEEeCCCcEEEEEEECCE------EEE---Eeeecch
Confidence 44677888999999999999999999999986433 3456789999999999999996332 211 2335689
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCC------ceeeeeccccccCCCCCeeeEEEEcH
Q psy5911 230 GEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA------EQTDINLPYITADKNGPKHLNVKITR 303 (1242)
Q Consensus 230 G~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr 303 (1242)
|++||+.+.+.+. ....+||++|+.++.. ....+.++... .+....++|
T Consensus 228 G~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~ 282 (371)
T TIGR01174 228 GNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSR 282 (371)
T ss_pred HHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcH
Confidence 9999998876531 1256899999999864 23445555432 234579999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHcCCCcCCcce-EEEecCccChHHHHHHHHHhccccccc------------CCCcc
Q psy5911 304 SKLESLVEDLISKSLKPCE-VALNDAKIDKSKISE-IILVGGQTRMPLVQKMVSEFFEKEVKK------------DINPD 369 (1242)
Q Consensus 304 ~~fe~l~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~~~~------------~~~p~ 369 (1242)
++|++++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++++++.|+.++.. ..+|.
T Consensus 283 ~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~ 361 (371)
T TIGR01174 283 KELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPE 361 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcH
Confidence 9999999999999999997 999998876 56776 999999999999999999999876432 12688
Q ss_pred hhhHhHHHHh
Q psy5911 370 EAVAVGASVQ 379 (1242)
Q Consensus 370 ~ava~GAa~~ 379 (1242)
.++|.|.++|
T Consensus 362 ~~~a~Gl~~~ 371 (371)
T TIGR01174 362 YSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHhC
Confidence 8889888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >KOG3003|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=195.44 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=114.9
Q ss_pred HHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCc---------chhhhHHHHHHHHH
Q psy5911 542 IILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSN---------QTKESEIIFLIFKL 612 (1242)
Q Consensus 542 ~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~---------~~~~~~g~~~~~~~ 612 (1242)
..+.++|+|..||++|.|+|+.|..++++.||+++|+++||.|.|||++|++...+. ...+.+|+.||+++
T Consensus 87 ~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~~~~L~~l~eGl~mte~q 166 (236)
T KOG3003|consen 87 QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQKKDLKDLFEGLSMTEAQ 166 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcccccchHHHHHHhHHHHHHHH
Confidence 446799999999999999999999999999999999999999999999998876542 24677999999999
Q ss_pred HHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCC-CCcccceEEEEec
Q psy5911 613 IKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSE-GGRTTPSVVGYTE 685 (1242)
Q Consensus 613 ~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~-g~~~~PS~v~~~~ 685 (1242)
|.++|.|||++..+|+|++||||.|||++|.|..+.+ .++|.-+.+.| ... |...-|+.|....
T Consensus 167 l~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~---pgtV~~v~k~G------y~L~~R~IRPA~VgV~~ 231 (236)
T KOG3003|consen 167 LKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKE---PGTVALVTKKG------YKLNGRVIRPAMVGVVK 231 (236)
T ss_pred HHHHHHHcCceecCCCCCCCCcchhheeEeccccCCC---CCeEEEEeccC------cccCCeeechhheeeec
Confidence 9999999999999999999999999999998776655 45577777777 222 3334588877653
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=214.40 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=146.5
Q ss_pred HHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHH
Q psy5911 153 QATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232 (1242)
Q Consensus 153 ~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~ 232 (1242)
+.+.+|++.|||++..++.||.|+|.++.... ..+..++|+|+||||||+++++- +.+. ......+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-e~~~gv~vvDiGggtTdisv~~~------G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-ERELGVCVVDIGGGTMDIAVYTG------GALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-hhhcCeEEEEeCCCceEEEEEEC------CEEE---EEeeeechHHH
Confidence 34467999999999999999999999986543 34667899999999999999963 2221 22234569999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCC------ceeeeeccccccCCCCCeeeEEEEcHHHH
Q psy5911 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA------EQTDINLPYITADKNGPKHLNVKITRSKL 306 (1242)
Q Consensus 233 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~f 306 (1242)
|++.|...+. . -...||++|+.+... ....+.++..... ....++|.+|
T Consensus 239 it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~------~~~~i~~~~l 293 (420)
T PRK09472 239 VTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR------PPRSLQRQTL 293 (420)
T ss_pred HHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC------CCeEEcHHHH
Confidence 9999876542 1 146899999775532 2334555432211 1248899999
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhccccccc------------CCC
Q psy5911 307 ESLVEDLISKSLKPCEV-------ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK------------DIN 367 (1242)
Q Consensus 307 e~l~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~------------~~~ 367 (1242)
.+++.+.++++.+.+++ .+..+++....++.|+|+||+|++|.+++++++.|+.++.. ..+
T Consensus 294 ~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~ 373 (420)
T PRK09472 294 AEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQE 373 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCC
Confidence 99999977777766654 55677777778999999999999999999999999866543 248
Q ss_pred cchhhHhHHHHhhh
Q psy5911 368 PDEAVAVGASVQAG 381 (1242)
Q Consensus 368 p~~ava~GAa~~a~ 381 (1242)
|..++|.|.++|+.
T Consensus 374 P~~ata~Gl~~~~~ 387 (420)
T PRK09472 374 PYYSTAVGLLHYGK 387 (420)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999999975
|
|
| >cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=184.70 Aligned_cols=117 Identities=21% Similarity=0.341 Sum_probs=106.2
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC--cchhhhHHHHHHHHHHHHHHHhcc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS--NQTKESEIIFLIFKLIKKFYKKFN 621 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~g 621 (1242)
+++.|+|..|+++|+|||++++++++++++.++++++||||+|||+||+++... +...+.+|++|++++|.++|+++|
T Consensus 4 ~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~~~L~~~G 83 (137)
T cd00446 4 LKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLLDVLEKHG 83 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHCC
Confidence 357899999999999999999999999999999999999999999999988654 345788999999999999999999
Q ss_pred ceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 622 ~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
|++|++.|++|||++|||+++.+..+. ..++++.++++|
T Consensus 84 v~~i~~~g~~FDp~~Heav~~~~~~~~---~~~~I~~v~~~G 122 (137)
T cd00446 84 VEKIEPEGEPFDPNLHEAVMQVPSPDV---EPGTVVEVLQKG 122 (137)
T ss_pred CEEECCCCCCCCHHHheeeeeecCCCC---CcCEEEEEeecC
Confidence 999999999999999999997655443 467799999998
|
The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. |
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=197.36 Aligned_cols=195 Identities=22% Similarity=0.327 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCC
Q psy5911 789 DSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL 868 (1242)
Q Consensus 789 ~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~l 868 (1242)
....+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+||||||++++.-.. .. ......+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-~~~~~~vvDiG~gtt~i~i~~~g~------~~---~~~~i~~ 226 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-KELGVCLIDIGGGTTDIAVYTGGS------IR---YTKVIPI 226 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-hcCCEEEEEeCCCcEEEEEEECCE------EE---EEeeecc
Confidence 3456778889999999999999999999999865433 355688999999999999996332 21 1233568
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC------ceeeEEeccccccCCCCeeeEEEEc
Q psy5911 869 GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA------EQTDINLPYITADKNGPKHLNVKIT 942 (1242)
Q Consensus 869 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~it 942 (1242)
||++||+.+.+.+. ....+||++|+.++.. ....+.++... .+....++
T Consensus 227 GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is 281 (371)
T TIGR01174 227 GGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLS 281 (371)
T ss_pred hHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEc
Confidence 99999998876531 1256899999999863 23445554432 23567999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCCccCcce-EEEecCcCchHHHHHHHHhhhcccccc------------cCCc
Q psy5911 943 RSKLESLVEDLISKSLKPCE-VALNDAKIDKSKISE-IILVGGQTRMPLVQKMVSEFFEKEVKK------------DINP 1008 (1242)
Q Consensus 943 r~~fe~~~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~ip~v~~~l~~~f~~~v~~------------~~~p 1008 (1242)
|++|++++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++++++.|+.++.. .-+|
T Consensus 282 ~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p 360 (371)
T TIGR01174 282 RKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDP 360 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCc
Confidence 99999999999999999997 999998876 56777 999999999999999999999865421 1267
Q ss_pred chhhhhhHHHh
Q psy5911 1009 DEAVAVGASVQ 1019 (1242)
Q Consensus 1009 ~~aVa~GAa~~ 1019 (1242)
..++|.|.++|
T Consensus 361 ~~~~a~Gl~~~ 371 (371)
T TIGR01174 361 EYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhC
Confidence 88888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-17 Score=190.11 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=145.0
Q ss_pred HHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchH
Q psy5911 793 QATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 872 (1242)
Q Consensus 793 ~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~ 872 (1242)
+.+.+|++.|||++..++.||.|+|.++..... .+..++|+|+||||||++++.- +.+ .......+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-~~~gv~vvDiGggtTdisv~~~------G~l---~~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-RELGVCVVDIGGGTMDIAVYTG------GAL---RHTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-hhcCeEEEEeCCCceEEEEEEC------CEE---EEEeeeechHHH
Confidence 334569999999999999999999999865533 4556888899999999999973 222 122335579999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC------ceeeEEeccccccCCCCeeeEEEEcHHHH
Q psy5911 873 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA------EQTDINLPYITADKNGPKHLNVKITRSKL 946 (1242)
Q Consensus 873 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~f 946 (1242)
+++.|...+.- -...||++|+..... ....+.++... +. ....++|.+|
T Consensus 239 it~dIa~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~----~~--~~~~i~~~~l 293 (420)
T PRK09472 239 VTSDIAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVG----GR--PPRSLQRQTL 293 (420)
T ss_pred HHHHHHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCC----CC--CCeEEcHHHH
Confidence 99998765421 146899999765432 22345554322 11 1248899999
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccc------------cCC
Q psy5911 947 ESLVEDLISKSLKPCE-------VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK------------DIN 1007 (1242)
Q Consensus 947 e~~~~~~~~~~~~~i~-------~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~------------~~~ 1007 (1242)
.+++.+.++++.+.++ ..+.++++....++.|+|+||+|++|.+++++++.|+.++.. ..+
T Consensus 294 ~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~ 373 (420)
T PRK09472 294 AEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQE 373 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCC
Confidence 9999997666666665 455677777778999999999999999999999999865432 248
Q ss_pred cchhhhhhHHHhhh
Q psy5911 1008 PDEAVAVGASVQAG 1021 (1242)
Q Consensus 1008 p~~aVa~GAa~~a~ 1021 (1242)
|..++|.|.++++.
T Consensus 374 P~~ata~Gl~~~~~ 387 (420)
T PRK09472 374 PYYSTAVGLLHYGK 387 (420)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999999975
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=179.35 Aligned_cols=325 Identities=24% Similarity=0.359 Sum_probs=214.9
Q ss_pred eEEEEEcCccceEEEEEE--CC-eEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCC
Q psy5911 4 KIIGIDLGTTNSCVAVLN--NG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 80 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~--~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 80 (1242)
.++|+|+||+..++.+.. ++ ...++.- -..||-= .. +|. +.--.+..+.. +..+....+..|....+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~SrG-ik-~G~-I~di~~~~~sI---~~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSRG-IK-KGV-IVDLDAAAQSI---KKAVEAAERMAGCEIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCcc-cc-cce-EEcHHHHHHHH---HHHHHHHHHhcCCCcce
Confidence 699999999999988773 34 4555532 1223211 11 122 22222222211 23455555666654331
Q ss_pred hHHHHHhccCCeEEEecCCCCeEEEEcC-eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCC-H---------
Q psy5911 81 EIVQTVLKMVPYKIVAADNGDAWVEVKD-KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFN-D--------- 149 (1242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~-~--------- 149 (1242)
..+ .++-......+....+.+.+ +.++.+++- .+.+.|......+-..++-..|-.|. +
T Consensus 77 v~v-----s~sG~~i~s~~~~g~v~i~~~~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~ 146 (418)
T COG0849 77 VIV-----SLSGNHIKSQNVNGEVSISEEKEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPL 146 (418)
T ss_pred EEE-----EeccceeEEEeeEEEEEcCCCCccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCccccCCcc
Confidence 110 11111112222233344445 666666664 44444444333333445555554443 1
Q ss_pred ------------------HHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEee
Q psy5911 150 ------------------SQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 211 (1242)
Q Consensus 150 ------------------~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 211 (1242)
.--+.+.+|.+.+|+++..++.+|.|+|.+...+ ..++..++++|+||||+|+++++-..
T Consensus 147 gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~-dEkelGv~lIDiG~GTTdIai~~~G~- 224 (418)
T COG0849 147 GMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTE-DEKELGVALIDIGGGTTDIAIYKNGA- 224 (418)
T ss_pred ccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCc-ccHhcCeEEEEeCCCcEEEEEEECCE-
Confidence 1256788999999999999999999999988543 44666788889999999999997543
Q ss_pred cCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc------eeeeecc
Q psy5911 212 DGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE------QTDINLP 285 (1242)
Q Consensus 212 ~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~ 285 (1242)
+...+--.+||++++..|+.-|.-. ...||++|..+.... ...+.++
T Consensus 225 --------l~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~ 277 (418)
T COG0849 225 --------LRYTGVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVP 277 (418)
T ss_pred --------EEEEeeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecc
Confidence 2222334579999999998776433 348999999886543 2335555
Q ss_pred ccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhccccccc-
Q psy5911 286 YITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK- 364 (1242)
Q Consensus 286 ~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~- 364 (1242)
....+ ....+||.++.+++++.+.++..+++..|++.+....-...|+|+||++.+|.+.+..++.|+.+++.
T Consensus 278 ~vg~~------~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig 351 (418)
T COG0849 278 SVGSD------IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLG 351 (418)
T ss_pred cCCCc------ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeC
Confidence 44332 25789999999999999999999999999999998777899999999999999999999999765432
Q ss_pred -----------CCCcchhhHhHHHHhhhhh
Q psy5911 365 -----------DINPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 365 -----------~~~p~~ava~GAa~~a~~l 383 (1242)
..+|..+.|.|..++++..
T Consensus 352 ~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 352 VPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 2368999999999988753
|
|
| >PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-18 Score=173.34 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=99.7
Q ss_pred HHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccC--CcchhhhHHHHHHHHHHHHHHHhccc
Q psy5911 545 EEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFD--SNQTKESEIIFLIFKLIKKFYKKFNI 622 (1242)
Q Consensus 545 ~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~g~ 622 (1242)
.+.|.+..++++|+++|+.++.+++++++.++|+++|||++|+|+||+.+.. .+...+.+|++|++++|.++|+++||
T Consensus 31 ~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~Gv 110 (165)
T PF01025_consen 31 KERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILEKNGV 110 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999999999999999999999999999853 45568999999999999999999999
Q ss_pred eecccCCCCCCcCccccccccccccccCCceEEEEEEEeCC
Q psy5911 623 KQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663 (1242)
Q Consensus 623 ~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g 663 (1242)
++|++.|++|||++|+|+++.+..+.+ .++++.|+++|
T Consensus 111 ~~i~~~G~~FDp~~heav~~~~~~~~~---~~~I~~v~~~G 148 (165)
T PF01025_consen 111 EEIEPVGEPFDPNLHEAVETVPDPDKE---PGTIVEVVRPG 148 (165)
T ss_dssp EEE--TSSB--TTTEEEEEEECSSSS----CTBEEEECC-E
T ss_pred EecCCCCCCCCHHHheeheecCcCCCC---cCeEEEEEecC
Confidence 999999999999999999987666655 45588888887
|
The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B. |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=179.24 Aligned_cols=309 Identities=17% Similarity=0.165 Sum_probs=195.4
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC---------CcEEEcHHHHHhhhhCCCchhhhchhhhC
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED---------NRIIVGLPAKRQAITNPNNTLYAIKRLIG 75 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~vG~~A~~~~~~~~~~~~~~~k~~lg 75 (1242)
.|.||+||+++++++..++.|..+ +||+++...+ ...++|.+|...... +
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------~ 59 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------G 59 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------c
Confidence 378999999999999876644432 3666665432 356778776542110 0
Q ss_pred CCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHH
Q psy5911 76 RKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 155 (1242)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~ 155 (1242)
. .-.+| +.+..+...+....+++++...... ....-..+++++|..++..+|+.+
T Consensus 60 ~----------~~~~P--------------~~~G~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 60 L----------ELIYP--------------IEHGIVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred e----------EEccc--------------ccCCEEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHH
Confidence 0 00111 1222334456667777777654321 122346799999999998888888
Q ss_pred HH-HHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHH
Q psy5911 156 KD-AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234 (1242)
Q Consensus 156 ~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD 234 (1242)
.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.-.. .+........+||.++|
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~G~-------~~~~~~~~~~~GG~~l~ 181 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYDGY-------VLPHAIKRLDLAGRDLT 181 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEECCE-------EchhhheeccccHHHHH
Confidence 77 5677999999999999999999864 5678999999999999885321 12222334568999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCcee---e-----eeccccccCCCCCeeeEEEEcHHHH
Q psy5911 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT---D-----INLPYITADKNGPKHLNVKITRSKL 306 (1242)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~-----i~i~~~~~~~~~~~~~~~~itr~~f 306 (1242)
+.|.+++..+.. ..+. ..-...++.+|+.+...... . ...........-+....+.++.+.|
T Consensus 182 ~~l~~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~ 251 (371)
T cd00012 182 RYLKELLRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF 251 (371)
T ss_pred HHHHHHHHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh
Confidence 999998865431 0011 11234567777775432110 0 0000000000000123466666544
Q ss_pred H---HHHHHH-----HHHHHHHHHHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhccc----------ccccCC
Q psy5911 307 E---SLVEDL-----ISKSLKPCEVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFEK----------EVKKDI 366 (1242)
Q Consensus 307 e---~l~~~~-----~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~~----------~~~~~~ 366 (1242)
. .++.|. ...+.+.|.+++.....+. .-.+.|+|+||+|++|.+.++|.+.++. .+....
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 2 233332 2367788888888765332 2378899999999999999999888741 234567
Q ss_pred CcchhhHhHHHHhhhh
Q psy5911 367 NPDEAVAVGASVQAGV 382 (1242)
Q Consensus 367 ~p~~ava~GAa~~a~~ 382 (1242)
+|..++-.||+++|..
T Consensus 332 ~~~~~aw~G~si~as~ 347 (371)
T cd00012 332 ERKYSVWLGGSILASL 347 (371)
T ss_pred CccccEEeCchhhcCc
Confidence 8999999999999865
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-15 Score=171.94 Aligned_cols=300 Identities=18% Similarity=0.168 Sum_probs=189.5
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC--------cEEEcHHHHHhhhhCCCchhhhchhhhC
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN--------RIIVGLPAKRQAITNPNNTLYAIKRLIG 75 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~--------~~~vG~~A~~~~~~~~~~~~~~~k~~lg 75 (1242)
..|+||+||.++.+++..+..|.++ +||+|+...++ ..++|.+|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 4799999999999999876666544 48888876432 246676663211 000
Q ss_pred CCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHH
Q psy5911 76 RKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 155 (1242)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~ 155 (1242)
.-.+| +.+..+...+....+++++...... ....-..+++|.|...+..+|+.+
T Consensus 61 -----------~~~~P--------------~~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~ 114 (373)
T smart00268 61 -----------ELKYP--------------IEHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKI 114 (373)
T ss_pred -----------eecCC--------------CcCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHH
Confidence 00112 1233445567778888888764211 112235789999999999999999
Q ss_pred HHHH-HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHH
Q psy5911 156 KDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234 (1242)
Q Consensus 156 ~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD 234 (1242)
.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++++++.+.-.. .+.....-..+||.++|
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~~G~-------~~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVVDGY-------VLPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEECCE-------EchhhheeccCcHHHHH
Confidence 8876 5779999999999999999986 35678899999999999986221 12222233468999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce-------------------eeeeccccccCCCCCe
Q psy5911 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ-------------------TDINLPYITADKNGPK 295 (1242)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------------~~i~i~~~~~~~~~~~ 295 (1242)
+.|.+++...- ...+. ..-...++.+|+.+..... ....+| +
T Consensus 182 ~~l~~~l~~~~---~~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp----d----- 242 (373)
T smart00268 182 DYLKELLSERG---YQFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP----D----- 242 (373)
T ss_pred HHHHHHHHhcC---CCCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC----C-----
Confidence 99998886511 00111 1123446666665432210 011111 1
Q ss_pred eeEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCCcC--CcceEEEecCccChHHHHHHHHHhcc------
Q psy5911 296 HLNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKIDKS--KISEIILVGGQTRMPLVQKMVSEFFE------ 359 (1242)
Q Consensus 296 ~~~~~itr~~fe---~l~~~~-----~~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~------ 359 (1242)
...+.+..+.|. .++.|. ...+.+.|.+++..+..+.. -.+.|+|+||+|++|.+.++|.+.+.
T Consensus 243 g~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~ 322 (373)
T smart00268 243 GNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKK 322 (373)
T ss_pred CCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCC
Confidence 112344433331 233331 23677788888876653321 25679999999999999999987772
Q ss_pred c--ccccCCCcchhhHhHHHHhhhh
Q psy5911 360 K--EVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 360 ~--~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
. .+....++..++=.||+++|..
T Consensus 323 ~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 323 LKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred ceeEEecCCCCccceEeCcccccCc
Confidence 1 2334556677888888888754
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-15 Score=144.63 Aligned_cols=196 Identities=26% Similarity=0.389 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCC
Q psy5911 119 EILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGG 198 (1242)
Q Consensus 119 ~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~Gg 198 (1242)
.+.+++++.+++.+|..++++.=++|..-.....+...+..+.||++++..++||||||.-.+++.. .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4678899999999999999999999999877777778888899999999999999999977766444 5779999
Q ss_pred cceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc
Q psy5911 199 GTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 278 (1242)
Q Consensus 199 gT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 278 (1242)
||+-+|+++-.+ |..+ .|..-||.++...|+-+ ++++ .++||..|+.-...
T Consensus 150 GTTGIsi~kkGk--------Viy~-ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 150 GTTGISIVKKGK--------VIYS-ADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred CcceeEEEEcCc--------EEEe-ccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc-
Confidence 999999997554 3333 34556887776554432 3333 45777777643111
Q ss_pred eeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc
Q psy5911 279 QTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358 (1242)
Q Consensus 279 ~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f 358 (1242)
+|.-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+.+++.|
T Consensus 201 -------------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 201 -------------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred -------------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh
Confidence 11112468999999999999998765 667999999999999999999999
Q ss_pred ccccccCCCcchhhHhHHHHh
Q psy5911 359 EKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 359 ~~~~~~~~~p~~ava~GAa~~ 379 (1242)
+.++..+..|....-+|-|.-
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccccccCCCcceechhhhhhc
Confidence 999999988888777776654
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-13 Score=152.10 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=160.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEE
Q psy5911 779 AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE 858 (1242)
Q Consensus 779 ~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~ 858 (1242)
.++|+|..+ -+.+.+|.+.+|+++..++.+|.|+|.+...+.. ++-.++++|+||||||++++.-..
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-kelGv~lIDiG~GTTdIai~~~G~-------- 224 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-KELGVALIDIGGGTTDIAIYKNGA-------- 224 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-HhcCeEEEEeCCCcEEEEEEECCE--------
Confidence 355666544 4678899999999999999999999998876554 444566679999999999998544
Q ss_pred EEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCc------eeeEEeccccccCC
Q psy5911 859 VLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE------QTDINLPYITADKN 932 (1242)
Q Consensus 859 v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~ 932 (1242)
+.+.+...+||++++..|..-|.-. ...||+.|....... ...+.++....+
T Consensus 225 -l~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~-- 282 (418)
T COG0849 225 -LRYTGVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD-- 282 (418)
T ss_pred -EEEEeeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc--
Confidence 2333445679999999998766433 347888988876442 223455443322
Q ss_pred CCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccc--------
Q psy5911 933 GPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK-------- 1004 (1242)
Q Consensus 933 ~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~-------- 1004 (1242)
....+||.++.+++++-+.+++.+++..|++.+....-...|+|+||++.+|.+.+..++.|+.++..
T Consensus 283 ----~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~G 358 (418)
T COG0849 283 ----IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVG 358 (418)
T ss_pred ----ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccC
Confidence 25689999999999999999999999999999998666889999999999999999999999755321
Q ss_pred ----cCCcchhhhhhHHHhhhhh
Q psy5911 1005 ----DINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 1005 ----~~~p~~aVa~GAa~~a~~l 1023 (1242)
..+|..+.|.|..++++..
T Consensus 359 l~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 359 LTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred chhhccCchhhhhHHHHHHHhhc
Confidence 2358889999999888754
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=158.18 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHccCCCCCCCcEEE
Q psy5911 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 832 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 832 (1242)
-+....+++++...... ....-..+++++|..++..+|+.+.+ +.+..|++.+.++++|.+|+++++. .+-+
T Consensus 74 ~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~l 146 (371)
T cd00012 74 WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGL 146 (371)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEE
Confidence 34556677766654221 12224579999999999888888877 5677999999999999999999875 4678
Q ss_pred EEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhh
Q psy5911 833 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKI 912 (1242)
Q Consensus 833 V~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 912 (1242)
|+|+|+++++++.+.-. ..+........+||.++|+.|.+++..+... .+. ..-...++..|+
T Consensus 147 VVDiG~~~t~i~pv~~G-------~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~~~-------~~~~~~~~~iKe 209 (371)
T cd00012 147 VVDSGDGVTHVVPVYDG-------YVLPHAIKRLDLAGRDLTRYLKELLRERGYE---LNS-------SDEREIVRDIKE 209 (371)
T ss_pred EEECCCCeeEEEEEECC-------EEchhhheeccccHHHHHHHHHHHHHhcCCC---ccc-------hhHHHHHHHHHH
Confidence 88999999999988632 2222233445689999999999998664320 011 111334566666
Q ss_pred hccCCcee---e-----EEeccccccCCCCeeeEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHhcCCCc--cC
Q psy5911 913 ELSNAEQT---D-----INLPYITADKNGPKHLNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKIDK--SK 974 (1242)
Q Consensus 913 ~Ls~~~~~---~-----i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~-----~~~~~~~i~~~l~~~~~~~--~~ 974 (1242)
.+..-... . ...........-+....+.++.+.|. .++.|. ...+.+.|.+++.....+. .-
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l 289 (371)
T cd00012 210 KLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDL 289 (371)
T ss_pred hheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHH
Confidence 64321100 0 00000000000011234666655442 233332 2367788888888765332 23
Q ss_pred cceEEEecCcCchHHHHHHHHhhhcc----------cccccCCcchhhhhhHHHhhhh
Q psy5911 975 ISEIILVGGQTRMPLVQKMVSEFFEK----------EVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 975 i~~ViLvGG~s~ip~v~~~l~~~f~~----------~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.+.|+|+||+|++|.+.++|.+.++. .+....+|..++-.||+++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 78899999999999999999988752 2345678899999999999865
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=152.61 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=183.4
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCC--------cEEEcHHHHHHhhhCCcchhhHHHHhcCC
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN--------RIIVGLPAKRQAITNPNNTLYAIKRLIGR 716 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~--------~~~~G~~A~~~~~~~p~~~~~~~krllg~ 716 (1242)
.+.+|.|+.++.+.+.....|.+ .+||+|+...++ ..++|.+|.... ...
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~---------- 60 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL---------- 60 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcC----CCc----------
Confidence 46789999998888765443433 358888876432 245676663211 000
Q ss_pred CCCChhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 717 KYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATK 796 (1242)
Q Consensus 717 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~ 796 (1242)
.-.+|+ .+..+.--+....+++++...... ....-..+++|.|...+..+|+.+.
T Consensus 61 ----------~~~~P~--------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~ 115 (373)
T smart00268 61 ----------ELKYPI--------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKIL 115 (373)
T ss_pred ----------eecCCC--------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHH
Confidence 011221 112233456667777777664211 1112356899999999999999998
Q ss_pred HHH-HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHH
Q psy5911 797 DAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 875 (1242)
Q Consensus 797 ~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~ 875 (1242)
+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++++++.+.-. ..+........+||.++|+
T Consensus 116 e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~~G-------~~~~~~~~~~~~GG~~l~~ 182 (373)
T smart00268 116 EIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVVDG-------YVLPHAIKRIDIAGRDLTD 182 (373)
T ss_pred HHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEECC-------EEchhhheeccCcHHHHHH
Confidence 876 6779999999999999999987 3457888999999999998622 2222223335689999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCc-------------------eeeEEeccccccCCCCee
Q psy5911 876 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-------------------QTDINLPYITADKNGPKH 936 (1242)
Q Consensus 876 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~i~i~~~~~~~~~~~~ 936 (1242)
.|.+++...-. .+ +. ..-...++.+|+.+..-. ...+.+| ++
T Consensus 183 ~l~~~l~~~~~-~~--~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp------dg--- 243 (373)
T smart00268 183 YLKELLSERGY-QF--NS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP------DG--- 243 (373)
T ss_pred HHHHHHHhcCC-CC--Cc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC------CC---
Confidence 99998866210 00 00 011234555555542210 0011111 11
Q ss_pred eEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHhcCCCcc--CcceEEEecCcCchHHHHHHHHhhhc-------
Q psy5911 937 LNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKIDKS--KISEIILVGGQTRMPLVQKMVSEFFE------- 999 (1242)
Q Consensus 937 ~~~~itr~~fe---~~~~~~-----~~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~------- 999 (1242)
..+.+..+.|. .++.|. ...+.+.|.+++..+..+.. -.+.|+|+||+|++|.+.++|.+.+.
T Consensus 244 ~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 244 NTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred CEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 12344433331 223331 23677788888877653321 15779999999999999999987772
Q ss_pred -ccccccCCcchhhhhhHHHhhhh
Q psy5911 1000 -KEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 1000 -~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
..+....++..++=.||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 12344556777888898888754
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-12 Score=148.94 Aligned_cols=292 Identities=16% Similarity=0.126 Sum_probs=177.5
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC------------cEEEcHHHHHhhhhCCCchhhhch
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN------------RIIVGLPAKRQAITNPNNTLYAIK 71 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~------------~~~vG~~A~~~~~~~~~~~~~~~k 71 (1242)
..|.||+||.++++++..+..|.++ +||+|+...+. ..++|++|....
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~------------ 64 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS------------ 64 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc------------
Confidence 4799999999999999876666543 47777664321 233444433210
Q ss_pred hhhCCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHH
Q psy5911 72 RLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ 151 (1242)
Q Consensus 72 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~q 151 (1242)
..+ .+...+....+...+....+++++...... ....-..+++|.|..++..+
T Consensus 65 ------------------~~~--------~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~ 117 (414)
T PTZ00280 65 ------------------KSY--------TLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPEN 117 (414)
T ss_pred ------------------CCc--------EEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHH
Confidence 000 111222334455667777788876543211 12223468999999999999
Q ss_pred HHHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCC----CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCC
Q psy5911 152 RQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKP----DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 226 (1242)
Q Consensus 152 r~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~----~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~ 226 (1242)
|+.+.+.+ +..+++-+.+..+|.+|++++...... ...+-||+|+|.|+++++.+.-+. . +.....-.
T Consensus 118 Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~------~-l~~~~~~~ 190 (414)
T PTZ00280 118 REYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY------V-IGSSIKHI 190 (414)
T ss_pred HHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE------E-cccceEEe
Confidence 99987765 555999999999999999987432221 233558889999999998875221 1 11111224
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce-------------eeeeccccccCCCC
Q psy5911 227 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ-------------TDINLPYITADKNG 293 (1242)
Q Consensus 227 ~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~~~~~~~ 293 (1242)
.+||.++++.|.++|..+. ..+... .....++.+|+.++.... ......+...+..+
T Consensus 191 ~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~ 260 (414)
T PTZ00280 191 PLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVT 260 (414)
T ss_pred cCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCC
Confidence 6799999999999886431 112111 112356677776643211 00000011111111
Q ss_pred CeeeEEEEcHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhcc
Q psy5911 294 PKHLNVKITRSKLES---LVEDLI------SKSLKPCEVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFE 359 (1242)
Q Consensus 294 ~~~~~~~itr~~fe~---l~~~~~------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~ 359 (1242)
+....+.|..+.|.. ++.|-+ ..+.++|.+.+..+..+. .-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 261 g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 261 KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 233467788777753 444532 145677777877665432 226779999999999999999988774
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-11 Score=138.23 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=138.1
Q ss_pred CCCcE--EEEecCCCCHHHH-HHHHHHHHHc------------CCCeeeeechHHHHHHHhccCCC-------CCCcEEE
Q psy5911 135 KIEKA--VITVPAYFNDSQR-QATKDAGKIA------------GLEVLRIINEPTAAALAYGLDKK-------PDDRIIV 192 (1242)
Q Consensus 135 ~~~~~--vitVPa~f~~~qr-~~~~~Aa~~A------------Gl~~~~li~Ep~AAal~y~~~~~-------~~~~~vl 192 (1242)
.+..+ +...|..+-..++ +.+++..... -+..+.+++||.+|.+.+..+.. .....++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 34444 4599998854443 6666654321 12446789999999887765422 2345689
Q ss_pred EEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhH
Q psy5911 193 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKI 272 (1242)
Q Consensus 193 V~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 272 (1242)
|+|+|+||+|++++.- +.+ +...++....|..++.+.+.+++..+. .+..+ +.. .++++
T Consensus 189 vIDIG~~TtD~~v~~~------~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~--~~~-------~ie~~-- 247 (344)
T PRK13917 189 VIDFGSGTTDLDTIQN------LKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASI--TPY-------MLEKG-- 247 (344)
T ss_pred EEEcCCCcEEEEEEeC------cEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCC--CHH-------HHHHH--
Confidence 9999999999999862 222 223344456799999999988885432 12222 111 12222
Q ss_pred HhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHH
Q psy5911 273 ELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQK 352 (1242)
Q Consensus 273 ~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~ 352 (1242)
|... .+.+. +... +.+ ++++.++++++++++.+.+...+.+ ..+++.|+|+||++++ +++
T Consensus 248 -l~~g---~i~~~-------~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 248 -LEYG---ACKLN-------QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred -HHcC---cEEeC-------CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 2111 11110 0011 222 4667788999999998888888753 3478999999999987 889
Q ss_pred HHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 353 MVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 353 ~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.|++.|+. +....||..|.|+|...+|..+.+
T Consensus 308 ~lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSD-VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCC-eEEcCChHHHHHHHHHHHHHHHhc
Confidence 99999975 467789999999999999876654
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=148.36 Aligned_cols=311 Identities=21% Similarity=0.252 Sum_probs=185.7
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC----cEEEcHHHHHhhhhCCCchhhhchhhhCCCC
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN----RIIVGLPAKRQAITNPNNTLYAIKRLIGRKY 78 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~----~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~ 78 (1242)
..+|-||+|+.++++++..+..|..+ +||+++...+. ...+|..+... .+. .
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~---~---------- 59 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN---L---------- 59 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG---E----------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh---e----------
Confidence 35789999999999999766655533 48888765443 35677663321 000 0
Q ss_pred CChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHH
Q psy5911 79 TDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA 158 (1242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~A 158 (1242)
.....+.+..+...+....+++++.... -.....-..++++.|..++..+|+.+.+.
T Consensus 60 ----------------------~~~~p~~~g~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 60 ----------------------ELRSPIENGVIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ----------------------EEEESEETTEESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ----------------------eeeeeccccccccccccccccccccccc-cccccccceeeeeccccCCchhhhhhhhh
Confidence 0011122334445666677777776643 11223345799999999999999987765
Q ss_pred -HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHH
Q psy5911 159 -GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237 (1242)
Q Consensus 159 -a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l 237 (1242)
.+..|++.+.++++|.+|+++++.. +-||+|+|.+.+.++-+.- + +.+........+||.++++.|
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~d------G-~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVVD------G-YVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEET------T-EE-GGGBEEES-SHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc------cccccccceeeeeeeeeee------c-cccccccccccccHHHHHHHH
Confidence 4577999999999999999999764 3488899999999987741 1 111112223467999999999
Q ss_pred HHHHHHH-HHHhcCCCCC------CCHHHHHHHHHHHHHHhHHhcCC---------------ceeeeeccccccCCCCCe
Q psy5911 238 INHLIYE-FKIENGVDLS------GDSLAMQRLKEAAEKAKIELSNA---------------EQTDINLPYITADKNGPK 295 (1242)
Q Consensus 238 ~~~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~~---------------~~~~i~i~~~~~~~~~~~ 295 (1242)
.++|..+ +......... ........-...++.+|+.+... ....+.+| + +
T Consensus 184 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP----d--g-- 255 (393)
T PF00022_consen 184 KELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP----D--G-- 255 (393)
T ss_dssp HHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T----T--S--
T ss_pred HHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc----c--c--
Confidence 9988874 1110000000 01111111233344555443211 11122222 1 1
Q ss_pred eeEEEEcHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCcCC--cceEEEecCccChHHHHHHHHHh
Q psy5911 296 HLNVKITRSKLESLVEDLIS----------------KSLKPCEVALNDAKIDKSK--ISEIILVGGQTRMPLVQKMVSEF 357 (1242)
Q Consensus 296 ~~~~~itr~~fe~l~~~~~~----------------~i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~ip~v~~~l~~~ 357 (1242)
..+.+..+.|. +.+.+++ .+.++|.+++.....+... .+.|+|+||+|++|.+.++|...
T Consensus 256 -~~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 256 -QTIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp -SEEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred -ccccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 25666666653 3343332 4778888888876543322 57899999999999999999877
Q ss_pred ccc--------ccccCC-CcchhhHhHHHHhhhhh
Q psy5911 358 FEK--------EVKKDI-NPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 358 f~~--------~~~~~~-~p~~ava~GAa~~a~~l 383 (1242)
+.. ++.... +|..++=.||+++|..-
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 622 234445 89999999999998753
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-13 Score=131.79 Aligned_cols=197 Identities=26% Similarity=0.387 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeC
Q psy5911 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLG 837 (1242)
Q Consensus 758 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~G 837 (1242)
-.+.+++++.+++.+|..++++.-++|..-.....+...+..+.||++++..++||+|||.-.+++.. .|+|+|
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiG 148 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeC
Confidence 34778999999999999999999999999877777788888999999999999999999977766543 677999
Q ss_pred CCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC
Q psy5911 838 GGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 917 (1242)
Q Consensus 838 ggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 917 (1242)
|||+-+|+++-.+ +..+ .|..-||.++.-.|+-+ ++++ ++++|+.|..-...
T Consensus 149 GGTTGIsi~kkGk--------Viy~-ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~ 200 (277)
T COG4820 149 GGTTGISIVKKGK--------VIYS-ADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG 200 (277)
T ss_pred CCcceeEEEEcCc--------EEEe-ccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc
Confidence 9999999997544 2222 34445887665444322 3333 45677776642111
Q ss_pred ceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhh
Q psy5911 918 EQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 997 (1242)
Q Consensus 918 ~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~ 997 (1242)
+|.-..+.|+++++.+.+.+-++..+ +..+.|+||+|.-|.+.+.+++.
T Consensus 201 --------------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~ 249 (277)
T COG4820 201 --------------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQ 249 (277)
T ss_pred --------------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHH
Confidence 11122468999999999999988765 66799999999999999999999
Q ss_pred hcccccccCCcchhhhhhHHHh
Q psy5911 998 FEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 998 f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
|+.++..+..|....-.|-|+-
T Consensus 250 l~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 250 LALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred hccccccCCCcceechhhhhhc
Confidence 9999998888888777776654
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=141.66 Aligned_cols=306 Identities=16% Similarity=0.157 Sum_probs=185.9
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC---------cEEEcHHHHHhhhhCCCchhhhchh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN---------RIIVGLPAKRQAITNPNNTLYAIKR 72 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~vG~~A~~~~~~~~~~~~~~~k~ 72 (1242)
|...|-||+|+.++++++..+..|.++ +||+|....+. ..++|.+|.... ..
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~~----- 64 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------GV----- 64 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc------cC-----
Confidence 345789999999999999977777644 47776654321 233444432100 00
Q ss_pred hhCCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHH
Q psy5911 73 LIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQR 152 (1242)
Q Consensus 73 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr 152 (1242)
+ .+...+++..+...+....+++|+...... ....-..+++|-|...+..+|
T Consensus 65 -------------------~--------~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~R 116 (375)
T PTZ00452 65 -------------------L--------AIKEPIQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNR 116 (375)
T ss_pred -------------------c--------EEcccCcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHH
Confidence 0 111123344455566777777776543211 222345789999999999999
Q ss_pred HHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchH
Q psy5911 153 QATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 231 (1242)
Q Consensus 153 ~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 231 (1242)
+.|.+.+ +..+++.+.+.+.|.+++++++. .+-||+|+|.|.+.++-+.-+ +.+.....-..+||.
T Consensus 117 e~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~dG-------~~l~~~~~r~~~gG~ 183 (375)
T PTZ00452 117 ERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVFEG-------HQIPQAITKINLAGR 183 (375)
T ss_pred HHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEECC-------EEeccceEEeeccch
Confidence 9987754 56788999999999999998764 345888999999999877522 122222223457999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce------------eeeeccccccCCCCCeeeEE
Q psy5911 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ------------TDINLPYITADKNGPKHLNV 299 (1242)
Q Consensus 232 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~~~~~~~~ 299 (1242)
++++.|.+.|..+ +..+.... . ...++.+|+.++.... .....++...| .-.+
T Consensus 184 ~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD-----g~~i 248 (375)
T PTZ00452 184 LCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD-----GNIL 248 (375)
T ss_pred HHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC-----CCEE
Confidence 9999998877532 21221111 0 2235556666542210 00000111111 1246
Q ss_pred EEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhccc--------c
Q psy5911 300 KITRSKLE---SLVEDLI-----SKSLKPCEVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFEK--------E 361 (1242)
Q Consensus 300 ~itr~~fe---~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~ 361 (1242)
.+..+.|. -+++|.+ ..+.+++.+.+..+..+. .-.+.|+|+||+|.+|.+.++|.+.+.. +
T Consensus 249 ~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~ 328 (375)
T PTZ00452 249 TIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQ 328 (375)
T ss_pred EeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeE
Confidence 67777663 2344432 235667777777665332 2267899999999999999999876621 2
Q ss_pred cccCCCcchhhHhHHHHhhhh
Q psy5911 362 VKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 362 ~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+..+.++..++=.|++++|..
T Consensus 329 v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 329 VAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred EecCCCcceeEEECchhhcCc
Confidence 333445667777888888753
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=141.56 Aligned_cols=304 Identities=14% Similarity=0.146 Sum_probs=184.7
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC---------cEEEcHHHHHhhhhCCCchhhhchhhh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN---------RIIVGLPAKRQAITNPNNTLYAIKRLI 74 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~vG~~A~~~~~~~~~~~~~~~k~~l 74 (1242)
..|-||+|+.++++++..+..|..+ +||+|+...+. ..++|+.|.... .
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~----------- 64 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G----------- 64 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---c-----------
Confidence 3688999999999999876666543 46766654321 233444432100 0
Q ss_pred CCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHH
Q psy5911 75 GRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQA 154 (1242)
Q Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~ 154 (1242)
.+ .+...+++..+...+....+++++..... .....-..+++|-|..+...+|+.
T Consensus 65 ----------------~~--------~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~ 119 (376)
T PTZ00281 65 ----------------IL--------TLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREK 119 (376)
T ss_pred ----------------Cc--------EEeccCcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHH
Confidence 00 01112233445556677777777654211 122233568889999999999999
Q ss_pred HHH-HHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHH
Q psy5911 155 TKD-AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 233 (1242)
Q Consensus 155 ~~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~i 233 (1242)
|.+ ..+..+++-+.+...|.+++++++. .+-||+|+|.+.+.++-+.-+. .+........+||.++
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~PV~dG~-------~~~~~~~~~~~GG~~l 186 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVMDSGDGVSHTVPIYEGY-------ALPHAILRLDLAGRDL 186 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcCC------ceEEEEECCCceEEEEEEEecc-------cchhheeeccCcHHHH
Confidence 877 5567899999999999999998764 3558889999999987654221 1222223346899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce------------eeeeccccccCCCCCeeeEEEE
Q psy5911 234 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ------------TDINLPYITADKNGPKHLNVKI 301 (1242)
Q Consensus 234 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~~~~~~~~~i 301 (1242)
++.|.+.|..+ +..... .. -...++.+|+.++.... ......+...+ ...+.+
T Consensus 187 t~~L~~lL~~~-----~~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd-----g~~i~i 251 (376)
T PTZ00281 187 TDYMMKILTER-----GYSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD-----GQVITI 251 (376)
T ss_pred HHHHHHHHHhc-----CCCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCC-----CCEEEe
Confidence 99998887543 111111 10 12346677776542210 00000111111 124566
Q ss_pred cHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC--CcceEEEecCccChHHHHHHHHHhcc--------cccc
Q psy5911 302 TRSKLE---SLVEDLI-----SKSLKPCEVALNDAKIDKS--KISEIILVGGQTRMPLVQKMVSEFFE--------KEVK 363 (1242)
Q Consensus 302 tr~~fe---~l~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~~~ 363 (1242)
..+.|. -+++|.+ ..+.++|.+++..+..+.. -.+.|+|+||+|.+|.+.++|+..+. .++.
T Consensus 252 ~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 252 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 665542 2444432 1456677777776543321 25789999999999999999987662 1234
Q ss_pred cCCCcchhhHhHHHHhhhh
Q psy5911 364 KDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 364 ~~~~p~~ava~GAa~~a~~ 382 (1242)
.+.++..++=+||+++|..
T Consensus 332 ~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 332 APPERKYSVWIGGSILASL 350 (376)
T ss_pred cCCCCceeEEECcccccCc
Confidence 4556778888899888863
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=137.68 Aligned_cols=298 Identities=15% Similarity=0.171 Sum_probs=183.8
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC---------CcEEEcHHHHHhhhhCCCchhhhchhhh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED---------NRIIVGLPAKRQAITNPNNTLYAIKRLI 74 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~vG~~A~~~~~~~~~~~~~~~k~~l 74 (1242)
..|-||+|+.++++++..+..|..+ +||+++...+ ...++|+.+.... . ..
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~-~~------ 66 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----G-IL------ 66 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----c-cc------
Confidence 4689999999999999876666533 4777765432 1234554442200 0 00
Q ss_pred CCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhc--CCCCcEEEEecCCCCHHHH
Q psy5911 75 GRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLN--EKIEKAVITVPAYFNDSQR 152 (1242)
Q Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~--~~~~~~vitVPa~f~~~qr 152 (1242)
.+...+.+..+.-.+....+++++... .++ ..-..+++|-|..++..+|
T Consensus 67 --------------------------~l~~Pi~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~~~~~r 117 (378)
T PTZ00004 67 --------------------------TLKYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANR 117 (378)
T ss_pred --------------------------eEcccCcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCCcHHHH
Confidence 011122333455567777778775432 222 2345688999999999999
Q ss_pred HHHHHH-HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchH
Q psy5911 153 QATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 231 (1242)
Q Consensus 153 ~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 231 (1242)
+.+.+. .+..|++.+.+.++|.+|+++++. .+-+|+|+|.+.++++-+.-+ +.+.....-.++||.
T Consensus 118 ~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~dG-------~~l~~~~~~~~~GG~ 184 (378)
T PTZ00004 118 EKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEG-------YSLPHAIHRLDVAGR 184 (378)
T ss_pred HHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEECC-------EEeecceeeecccHH
Confidence 887665 467799999999999999998754 345888999999999877421 122222333468999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc-----------------eeeeeccccccCCCCC
Q psy5911 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-----------------QTDINLPYITADKNGP 294 (1242)
Q Consensus 232 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~~ 294 (1242)
++++.|.+.|..+ +..+... . -...++.+|+.+.... .....+| +
T Consensus 185 ~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP----d---- 246 (378)
T PTZ00004 185 DLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP----D---- 246 (378)
T ss_pred HHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC----C----
Confidence 9999999987543 1111111 0 1223555665543211 0111221 1
Q ss_pred eeeEEEEcHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhcc----
Q psy5911 295 KHLNVKITRSKLE---SLVEDL------ISKSLKPCEVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFE---- 359 (1242)
Q Consensus 295 ~~~~~~itr~~fe---~l~~~~------~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~---- 359 (1242)
.-.+.+..+.|. -+++|- ...+.++|.+++..+..+. .-...|+|+||+|.+|.+.++|...+.
T Consensus 247 -g~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p 325 (378)
T PTZ00004 247 -GTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAP 325 (378)
T ss_pred -CCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCC
Confidence 123556666553 345553 2245677777777665432 225779999999999999999987662
Q ss_pred ----cccccCCCcchhhHhHHHHhhhh
Q psy5911 360 ----KEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 360 ----~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
.++....++..++=.||+++|..
T Consensus 326 ~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 326 STMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred CCccEEEecCCCCceeEEECcccccCc
Confidence 12334556777778888888753
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=134.27 Aligned_cols=302 Identities=18% Similarity=0.157 Sum_probs=184.9
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC---------cEEEcHHHHHhhhhCCCchhhhchhhhC
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN---------RIIVGLPAKRQAITNPNNTLYAIKRLIG 75 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~vG~~A~~~~~~~~~~~~~~~k~~lg 75 (1242)
.|-||+|+.++++++..+..|.++ +||+|+..... ..++|.+|.... .
T Consensus 14 ~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--~------------- 70 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--G------------- 70 (380)
T ss_pred eEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC--c-------------
Confidence 588999999999999876666543 46666654321 234454443210 0
Q ss_pred CCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHH
Q psy5911 76 RKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 155 (1242)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~ 155 (1242)
.-.+...+....+.-.+....+++++.+... ....-..+++|-|..++..+|+.+
T Consensus 71 -----------------------~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~ 125 (380)
T PTZ00466 71 -----------------------LLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKI 125 (380)
T ss_pred -----------------------CceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHH
Confidence 0001122334456667777888888764321 222345688999999999999998
Q ss_pred HHH-HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHH
Q psy5911 156 KDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234 (1242)
Q Consensus 156 ~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD 234 (1242)
.+. .+..+++.+.+.+.|.+|+++++. .+-+|+|+|.+.+.++-+.-+ +.+........+||.+++
T Consensus 126 ~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tglVVD~G~~~t~v~PV~~G-------~~~~~~~~~~~~GG~~lt 192 (380)
T PTZ00466 126 AEVFFETFNVPALFISIQAILSLYSCGK------TNGTVLDCGDGVCHCVSIYEG-------YSITNTITRTDVAGRDIT 192 (380)
T ss_pred HHHHhccCCCCeEEEecchHHHHHhcCC------ceEEEEeCCCCceEEEEEECC-------EEeecceeEecCchhHHH
Confidence 665 566789999999999999998864 356888999999999766421 112222223468999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc-----------eeeeeccccccCCCCCeeeEEEEcH
Q psy5911 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-----------QTDINLPYITADKNGPKHLNVKITR 303 (1242)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~~~~~~~~~~~~~~~~itr 303 (1242)
+.|.+.|..+ +..... . .-+..++.+|+.++... ......++...+ ...+.+..
T Consensus 193 ~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPd-----g~~i~l~~ 257 (380)
T PTZ00466 193 TYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPD-----GSQILIGS 257 (380)
T ss_pred HHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCC-----CcEEEEch
Confidence 9998877532 111111 0 11334556666554211 000001111111 23466777
Q ss_pred HHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhccc--------ccccC
Q psy5911 304 SKLE---SLVEDLI-----SKSLKPCEVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKD 365 (1242)
Q Consensus 304 ~~fe---~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~~~~~ 365 (1242)
+.|. -+++|-+ ..+.++|.+.+..+..+. .-...|+|+||+|.+|.+.++|+..+.. .+...
T Consensus 258 er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~ 337 (380)
T PTZ00466 258 ERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAP 337 (380)
T ss_pred HHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecC
Confidence 6663 2444422 145667777777665432 2267899999999999999999877621 23344
Q ss_pred CCcchhhHhHHHHhhhh
Q psy5911 366 INPDEAVAVGASVQAGV 382 (1242)
Q Consensus 366 ~~p~~ava~GAa~~a~~ 382 (1242)
.++..++=+||+++|..
T Consensus 338 ~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 338 PERKFSTFIGGSILASL 354 (380)
T ss_pred CCCceeEEECchhhcCc
Confidence 56667778898888753
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-10 Score=132.69 Aligned_cols=229 Identities=15% Similarity=0.086 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHccCCCCC----C
Q psy5911 753 PPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKP----D 827 (1242)
Q Consensus 753 ~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~----~ 827 (1242)
--+....+++++...... ....-..+++|.|..++..+|+.+.+.+ +..+++.+.+..+|.+|++++...... .
T Consensus 80 dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred CHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 345556677765432111 1222345899999999999999987755 566999999999999999987432211 2
Q ss_pred CcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Q psy5911 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 907 (1242)
Q Consensus 828 ~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 907 (1242)
..+-||+|+|.|+++++.+.-. . .+.....-..+||.++++.|.++|.++.. .+... .....+
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~G------~-~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~ 221 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVDG------Y-VIGSSIKHIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLA 221 (414)
T ss_pred ceeEEEEECCCCceEEEEEECC------E-EcccceEEecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHH
Confidence 2345888999999999887522 1 11122223468999999999999865321 11111 012345
Q ss_pred HHhhhhccCCce-------------eeEEeccccccCCCCeeeEEEEcHHHHHH---HHHHHH------HHHHHHHHHHH
Q psy5911 908 EKAKIELSNAEQ-------------TDINLPYITADKNGPKHLNVKITRSKLES---LVEDLI------SKSLKPCEVAL 965 (1242)
Q Consensus 908 e~~K~~Ls~~~~-------------~~i~i~~~~~~~~~~~~~~~~itr~~fe~---~~~~~~------~~~~~~i~~~l 965 (1242)
+.+|+.++.... ......+...+..++....+.+..+.|.- ++.|-+ ..+.++|.+++
T Consensus 222 ~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI 301 (414)
T PTZ00280 222 QRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAI 301 (414)
T ss_pred HHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHH
Confidence 566665532110 00000011111111233467777777653 444532 14567777888
Q ss_pred HhcCCCcc--CcceEEEecCcCchHHHHHHHHhhhc
Q psy5911 966 NDAKIDKS--KISEIILVGGQTRMPLVQKMVSEFFE 999 (1242)
Q Consensus 966 ~~~~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~ 999 (1242)
..+..+.. -.+.|+|+||+|.+|.+.++|++.+.
T Consensus 302 ~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 302 QSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred HhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 77654322 26779999999999999999988774
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=126.11 Aligned_cols=208 Identities=17% Similarity=0.253 Sum_probs=136.9
Q ss_pred CCcEE--EEecCCCCHHHH-HHHHHHHHHc------C------CceeeeechhHHHHHHccCCCC-------CCCcEEEE
Q psy5911 776 IEKAV--ITVPAYFNDSQR-QATKDAGKIA------G------LEVLRIINEPTAAALAYGLDKK-------PDDRIIVV 833 (1242)
Q Consensus 776 ~~~~V--itVPa~~~~~qr-~~~~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~~-------~~~~~vlV 833 (1242)
+..++ ...|..+-..++ +.+++..... | +..+.++.||.+|.+.+..+.. .....++|
T Consensus 110 ~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilv 189 (344)
T PRK13917 110 VVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSV 189 (344)
T ss_pred cceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEE
Confidence 44444 588998854443 6666654321 1 2346789999999887765422 13456899
Q ss_pred EeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhh
Q psy5911 834 YDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIE 913 (1242)
Q Consensus 834 ~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 913 (1242)
+|+|+||+|++++.- +.+ +...++....|..++.+.+.+++..+.. +..+ +.. ++.+..+.-
T Consensus 190 IDIG~~TtD~~v~~~------~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~~---~ie~~l~~g--- 251 (344)
T PRK13917 190 IDFGSGTTDLDTIQN------LKR-VEEESFVIPKGTIDVYKRIASHISKKEE---GASI--TPY---MLEKGLEYG--- 251 (344)
T ss_pred EEcCCCcEEEEEEeC------cEE-cccccccccchHHHHHHHHHHHHHhhCC---CCCC--CHH---HHHHHHHcC---
Confidence 999999999999862 222 2233444567999999999888854322 2221 111 122121111
Q ss_pred ccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHH
Q psy5911 914 LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 993 (1242)
Q Consensus 914 Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~ 993 (1242)
.+.+. +.. .+.+ ++++.++++++++++.+.+...+.+ ..+++.|+|+||++++ +++.
T Consensus 252 -------~i~~~-------~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~ 308 (344)
T PRK13917 252 -------ACKLN-------QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDS 308 (344)
T ss_pred -------cEEeC-------CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHH
Confidence 11110 001 1223 4567788999999998888888754 3479999999999987 7899
Q ss_pred HHhhhcccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 994 VSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 994 l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
|++.|+. +....||..|.|+|...+|..+.+
T Consensus 309 lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 309 LSHWYSD-VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHcCC-eEEcCChHHHHHHHHHHHHHHHhc
Confidence 9999975 356789999999999999876654
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-10 Score=131.23 Aligned_cols=309 Identities=19% Similarity=0.226 Sum_probs=178.8
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCC----cEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCC
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN----RIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 720 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~----~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d 720 (1242)
++-+|.|+.++.+++.....|. ..+||++....+. ...+|..+... .+..
T Consensus 6 ~vViD~Gs~~~k~G~age~~P~--------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~--------------- 59 (393)
T PF00022_consen 6 PVVIDNGSSTIKAGFAGEDLPR--------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL--------------- 59 (393)
T ss_dssp EEEEEECSSEEEEEETTSSS-S--------EEEESEEEEESSSSSSSSCEETHHHHHT---GTGE---------------
T ss_pred EEEEECCCceEEEEECCCCCCC--------CcCCCccccccccccceeEEeecccccc---hhhe---------------
Confidence 4568999999988885433333 2357887765432 35677663321 0000
Q ss_pred hhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHH-H
Q psy5911 721 EIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA-G 799 (1242)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~A-a 799 (1242)
. ....+....+.--+....+++++..... .....-..++++.|..++..+|+.+.+. .
T Consensus 60 ------------~--------~~~p~~~g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lf 118 (393)
T PF00022_consen 60 ------------E--------LRSPIENGVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILF 118 (393)
T ss_dssp ------------E--------EEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHH
T ss_pred ------------e--------eeeecccccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhh
Confidence 0 0001112223334555666666655431 1222345699999999999999988775 5
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+..|++.+.++++|.+|+++++... -||+|+|.+.+.++.+.- + +.+........+||.++++.|.+
T Consensus 119 E~~~~~~v~~~~~~~~a~~~~g~~t------glVVD~G~~~t~v~pV~d------G-~~~~~~~~~~~~GG~~lt~~l~~ 185 (393)
T PF00022_consen 119 EKFGVPSVYFIPSPLLALYASGRTT------GLVVDIGYSSTSVVPVVD------G-YVLPHSIKRSPIGGDDLTEYLKE 185 (393)
T ss_dssp HTS--SEEEEEEHHHHHHHHTTBSS------EEEEEESSS-EEEEEEET------T-EE-GGGBEEES-SHHHHHHHHHH
T ss_pred cccccceeeeeeccccccccccccc------ccccccceeeeeeeeeee------c-cccccccccccccHHHHHHHHHH
Confidence 6789999999999999999997753 488899999999988741 1 22222222356799999999999
Q ss_pred HHHHH-hhhhcCCCCC------CCHHHHHHHHHHHHHhhhhcc---C------------CceeeEEeccccccCCCCeee
Q psy5911 880 HLIYE-FKIENGVDLS------GDSLAMQRLKEAAEKAKIELS---N------------AEQTDINLPYITADKNGPKHL 937 (1242)
Q Consensus 880 ~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls---~------------~~~~~i~i~~~~~~~~~~~~~ 937 (1242)
+|..+ +......... ........-....+.+|+.+. . .....+.+| ++ .
T Consensus 186 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~ 256 (393)
T PF00022_consen 186 LLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---Q 256 (393)
T ss_dssp HHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---S
T ss_pred HHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---c
Confidence 98874 1111000000 011101111222333333321 1 111222222 11 2
Q ss_pred EEEEcHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCCccC--cceEEEecCcCchHHHHHHHHhhhc
Q psy5911 938 NVKITRSKLESLVEDLIS----------------KSLKPCEVALNDAKIDKSK--ISEIILVGGQTRMPLVQKMVSEFFE 999 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~----------------~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~ip~v~~~l~~~f~ 999 (1242)
.+.+..+.|. +.+.+|. .+.++|.+++.....+... .+.|+|+||+|++|.+.++|...+.
T Consensus 257 ~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~ 335 (393)
T PF00022_consen 257 TIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELR 335 (393)
T ss_dssp EEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHH
T ss_pred cccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhh
Confidence 5666665553 3343332 5778888888877643322 6789999999999999999987763
Q ss_pred c--------cccccC-CcchhhhhhHHHhhhhh
Q psy5911 1000 K--------EVKKDI-NPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 1000 ~--------~v~~~~-~p~~aVa~GAa~~a~~l 1023 (1242)
. ++.... +|..++=.||+++|..-
T Consensus 336 ~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 336 SLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhccccceeccCchhhhhcccccceeeeccc
Confidence 2 244455 89999999999999754
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=124.62 Aligned_cols=205 Identities=20% Similarity=0.213 Sum_probs=127.0
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHHHHc---------CCCeeeeechHHHHHHHhccCCC---CCCcEEEEEEeCCccee
Q psy5911 135 KIEKAVITVPAYFNDSQRQATKDAGKIA---------GLEVLRIINEPTAAALAYGLDKK---PDDRIIVVYDLGGGTFD 202 (1242)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~~~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~~---~~~~~vlV~D~GggT~D 202 (1242)
.+..+|+..|..+...+|+.+++..... -+..+.+++||.+|.+.+..+.. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3567999999999998999998876532 23557899999999888754321 24566899999999999
Q ss_pred eeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeee
Q psy5911 203 ISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI 282 (1242)
Q Consensus 203 vsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 282 (1242)
+.++. + ..+ +....+....|-.++-+.+.+.+.+++. .+...+.. ..+.+ |..... +
T Consensus 181 ~~~~~--~----~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~-------~i~~~---l~~g~~--~ 237 (320)
T TIGR03739 181 WLVAR--G----MRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID-------RIDLA---LRTGKQ--P 237 (320)
T ss_pred eehcc--C----CEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH-------HHHHH---HHhCCc--e
Confidence 98774 2 223 3445555667888888887777766553 22101111 11111 111100 0
Q ss_pred eccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhccc-c
Q psy5911 283 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK-E 361 (1242)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~-~ 361 (1242)
.+ . + + .+.|+ +..+.....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+. .
T Consensus 238 ~~---~-g----k--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~ 299 (320)
T TIGR03739 238 RI---Y-Q----K--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHR 299 (320)
T ss_pred ee---c-c----e--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCe
Confidence 00 0 0 1 11222 2222333444444443433332 1245899999999987 567889999975 3
Q ss_pred cccCCCcchhhHhHHHHhh
Q psy5911 362 VKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 362 ~~~~~~p~~ava~GAa~~a 380 (1242)
+....||..|.|+|-..++
T Consensus 300 i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 300 IVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred eEecCCcHHHHHHHHHHhh
Confidence 4567899999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=126.51 Aligned_cols=236 Identities=16% Similarity=0.128 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcEEE
Q psy5911 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 832 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 832 (1242)
-+....+++|+...... ....-..+++|-|...+..+|+.|.+. .+..+++.+.+.+.|.+++++++.. +-+
T Consensus 79 wd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~------tgl 151 (375)
T PTZ00452 79 WDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKT------IGL 151 (375)
T ss_pred HHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCc------eee
Confidence 34445566665432211 222345689999999999999998775 4667888999999999999988653 458
Q ss_pred EEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhh
Q psy5911 833 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKI 912 (1242)
Q Consensus 833 V~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 912 (1242)
|+|+|.|.+.++-+.- | +.+........+||.++++.|.++|..+ +....... . ...++.+|+
T Consensus 152 VVDiG~~~t~v~PV~d------G-~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe 214 (375)
T PTZ00452 152 VVDSGEGVTHCVPVFE------G-HQIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKE 214 (375)
T ss_pred eecCCCCcceEEEEEC------C-EEeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHH
Confidence 8899999999987752 1 2222233335689999999998887542 11111111 0 112344454
Q ss_pred hccCCc----------------eeeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhc
Q psy5911 913 ELSNAE----------------QTDINLPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDA 968 (1242)
Q Consensus 913 ~Ls~~~----------------~~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~ 968 (1242)
.++.-. ...+.+| | .-.+.+..+.|. -+++|-+ ..+.+++.+++..+
T Consensus 215 ~~c~v~~d~~~e~~~~~~~~~~~~~y~LP----D-----g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c 285 (375)
T PTZ00452 215 RLCYTALDPQDEKRIYKESNSQDSPYKLP----D-----GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKC 285 (375)
T ss_pred HhccccCcHHHHHHHhhccCCcCceEECC----C-----CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhC
Confidence 443110 0112222 1 134667766663 2344432 23567777777766
Q ss_pred CCCc--cCcceEEEecCcCchHHHHHHHHhhhcc--------cccccCCcchhhhhhHHHhhhh
Q psy5911 969 KIDK--SKISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 969 ~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
..+. .-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=.|++++|..
T Consensus 286 ~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 286 DLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred CHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 5332 2267899999999999999999877621 2334456667788899888863
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=125.32 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechHHHHHHHhc-----cCCCCCCc-EEEEEEeCCcceeeeEEEEEeecCCceEEEEEe
Q psy5911 149 DSQRQATKDAGKIAGLEVLRIINEPTAAALAYG-----LDKKPDDR-IIVVYDLGGGTFDISVIEIANVDGETQFEVLST 222 (1242)
Q Consensus 149 ~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~-----~~~~~~~~-~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~ 222 (1242)
....+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|++|++++++.-+. +..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~------~~~--- 212 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGR------MLF--- 212 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCe------EEE---
Confidence 455778889999999999999999999876663 22222233 388889999999999996332 111
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEc
Q psy5911 223 NGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT 302 (1242)
Q Consensus 223 ~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~it 302 (1242)
.....+||.+|++.+.+.+ +.+ ...||+.|...+... ..
T Consensus 213 ~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------------~~----- 251 (348)
T TIGR01175 213 TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------------LY----- 251 (348)
T ss_pred EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------------ch-----
Confidence 1224479999998886433 221 357888887532110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcCCcceEEEecCccChHHHHHHHHHhccccccc----------------
Q psy5911 303 RSKLESLVEDLISKSLKPCEVALNDA--KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK---------------- 364 (1242)
Q Consensus 303 r~~fe~l~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~---------------- 364 (1242)
-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.||.++..
T Consensus 252 ---~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~ 328 (348)
T TIGR01175 252 ---DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAG 328 (348)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHH
Confidence 02345666677777777777532 223345999999999999999999999999765432
Q ss_pred ---CCCcchhhHhHHHHhh
Q psy5911 365 ---DINPDEAVAVGASVQA 380 (1242)
Q Consensus 365 ---~~~p~~ava~GAa~~a 380 (1242)
...|..++|.|+|+++
T Consensus 329 ~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 329 RLAVDAPALMTALGLALRG 347 (348)
T ss_pred HHHhhhHHHHHHhhHhhcC
Confidence 1345667888887764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-09 Score=121.68 Aligned_cols=234 Identities=15% Similarity=0.138 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHhHhC--CCCCcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcE
Q psy5911 754 PQISAEILKKMKSTAETFLN--EKIEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~ 830 (1242)
-+....++.++.. ..++ ..-..+++|-|..++..+|+.+.+. .+..|++.+.+..+|.+|+++++. .+
T Consensus 80 ~d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~t 150 (378)
T PTZ00004 80 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TT 150 (378)
T ss_pred HHHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ce
Confidence 4555566666432 1222 2334688999999999999887664 577899999999999999998864 34
Q ss_pred EEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHh
Q psy5911 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 910 (1242)
Q Consensus 831 vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 910 (1242)
-+|+|+|.+.++++.+.- + +.+........+||.++++.|.+.|..+- + .+... . -...++..
T Consensus 151 glVVDiG~~~t~v~pV~d------G-~~l~~~~~~~~~GG~~lt~~L~~lL~~~~---~--~~~~~--~---~~~~~~~i 213 (378)
T PTZ00004 151 GIVLDSGDGVSHTVPIYE------G-YSLPHAIHRLDVAGRDLTEYMMKILHERG---T--TFTTT--A---EKEIVRDI 213 (378)
T ss_pred EEEEECCCCcEEEEEEEC------C-EEeecceeeecccHHHHHHHHHHHHHhcC---C--CCCcH--H---HHHHHHHH
Confidence 588899999999987752 1 22223333456899999999999885431 1 11111 1 11234445
Q ss_pred hhhccCC---------------c--eeeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHH------HHHHHHHHHHH
Q psy5911 911 KIELSNA---------------E--QTDINLPYITADKNGPKHLNVKITRSKLE---SLVEDL------ISKSLKPCEVA 964 (1242)
Q Consensus 911 K~~Ls~~---------------~--~~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~------~~~~~~~i~~~ 964 (1242)
|+.+..- . ...+.+| + .-.+.+..+.|. -++.|- ...+.++|.++
T Consensus 214 Ke~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP----d-----g~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~s 284 (378)
T PTZ00004 214 KEKLCYIALDFDEEMGNSAGSSDKYEESYELP----D-----GTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQS 284 (378)
T ss_pred hhcceeecCCHHHHHhhhhcCccccceEEECC----C-----CCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHH
Confidence 5443211 0 1112222 1 123556665553 245553 23456777788
Q ss_pred HHhcCCCcc--CcceEEEecCcCchHHHHHHHHhhhcc--------cccccCCcchhhhhhHHHhhhh
Q psy5911 965 LNDAKIDKS--KISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 965 l~~~~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+..+..+.. -...|+|+||+|.+|.+.++|...+.. ++....++..++=.||+++|..
T Consensus 285 I~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 285 INKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred HHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCc
Confidence 777654321 267899999999999999999877631 2344556778888888888753
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=127.05 Aligned_cols=238 Identities=13% Similarity=0.135 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHhHhC--CCCCcEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHccCCCCCCCcE
Q psy5911 754 PQISAEILKKMKSTAETFLN--EKIEKAVITVPAYFNDSQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~~~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~ 830 (1242)
-+....++.++... .+. ..-..+++|-|..++..+|+.|.+ ..+..+++.+.+...|.+++++++. .+
T Consensus 80 wd~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~t 150 (376)
T PTZ00281 80 WDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TT 150 (376)
T ss_pred HHHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ce
Confidence 34455566665432 222 223468889999999999999887 5577899999999999999998765 25
Q ss_pred EEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHh
Q psy5911 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 910 (1242)
Q Consensus 831 vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 910 (1242)
-+|+|+|.+.+.++-+.-. +.+........+||.++++.|.+.|..+- ..... .. . ...++.+
T Consensus 151 glVVDiG~~~t~v~PV~dG-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~~-~---~~~~~~i 213 (376)
T PTZ00281 151 GIVMDSGDGVSHTVPIYEG-------YALPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-TA-E---REIVRDI 213 (376)
T ss_pred EEEEECCCceEEEEEEEec-------ccchhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-HH-H---HHHHHHH
Confidence 5888999999998766422 22222333456899999999998875531 11111 10 0 2235556
Q ss_pred hhhccCCc---e---------eeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCC
Q psy5911 911 KIELSNAE---Q---------TDINLPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDAKI 970 (1242)
Q Consensus 911 K~~Ls~~~---~---------~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~~ 970 (1242)
|+.+..-. . ......+..+| .-.+++..+.|. -++.|-+ ..+.++|.+++..+..
T Consensus 214 Ke~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd-----g~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~ 288 (376)
T PTZ00281 214 KEKLAYVALDFEAEMQTAASSSALEKSYELPD-----GQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV 288 (376)
T ss_pred HHhcEEecCCchHHHHhhhcCcccceeEECCC-----CCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCCh
Confidence 66543110 0 00000111111 123556655442 2444432 1456777777776643
Q ss_pred Ccc--CcceEEEecCcCchHHHHHHHHhhhcc--------cccccCCcchhhhhhHHHhhhh
Q psy5911 971 DKS--KISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 971 ~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+.. -.+.|+|+||+|.+|.+.++|+..+.. ++..+.++..++=.||+++|..
T Consensus 289 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 289 DIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred hHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 321 257899999999999999999877631 2444567778888999988864
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=117.85 Aligned_cols=236 Identities=16% Similarity=0.119 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcEE
Q psy5911 753 PPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRII 831 (1242)
Q Consensus 753 ~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~v 831 (1242)
--+....+++++.+... ....-..+++|-|..++..+|+.+.+. .+..+++.+.+.++|.+|+++++. .+-
T Consensus 85 dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tg 156 (380)
T PTZ00466 85 NWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNG 156 (380)
T ss_pred CHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceE
Confidence 34455566666653211 122234688899999999999998664 577788999999999999998864 355
Q ss_pred EEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhh
Q psy5911 832 VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAK 911 (1242)
Q Consensus 832 lV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 911 (1242)
+|+|+|.+.+.++-+.- + +.+........+||.++++.|.+.+..+ +..... . .-+..++.+|
T Consensus 157 lVVD~G~~~t~v~PV~~------G-~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iK 219 (380)
T PTZ00466 157 TVLDCGDGVCHCVSIYE------G-YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMK 219 (380)
T ss_pred EEEeCCCCceEEEEEEC------C-EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHH
Confidence 88899999999976652 1 2222233335689999999999887542 111110 1 1122344555
Q ss_pred hhccCC-------------c--eeeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhc
Q psy5911 912 IELSNA-------------E--QTDINLPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDA 968 (1242)
Q Consensus 912 ~~Ls~~-------------~--~~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~ 968 (1242)
+.+..- . ...+.+| + ...+.+..+.|. -++.|-+ ..+.++|.+.+.++
T Consensus 220 e~~c~v~~d~~~e~~~~~~~~~~~~y~LP------d---g~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c 290 (380)
T PTZ00466 220 ENCCYVSFNMNKEKNSSEKALTTLPYILP------D---GSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRA 290 (380)
T ss_pred HhCeEecCChHHHHhhccccccceeEECC------C---CcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhC
Confidence 544210 0 0112221 1 134667766663 2444422 14566777777766
Q ss_pred CCCcc--CcceEEEecCcCchHHHHHHHHhhhcc--------cccccCCcchhhhhhHHHhhhh
Q psy5911 969 KIDKS--KISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 969 ~~~~~--~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
..+.. -...|+|+||+|.+|.+.++|+..+.. .+....++..++=.||+++|..
T Consensus 291 ~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 291 DMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred ChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCc
Confidence 54322 267899999999999999999877721 2344556677888899888863
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=118.11 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=120.3
Q ss_pred HHHHHHHHhHhcCCCCcEEE--------------------EecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhc
Q psy5911 122 KKMKSTAETFLNEKIEKAVI--------------------TVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181 (1242)
Q Consensus 122 ~~l~~~a~~~~~~~~~~~vi--------------------tVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~ 181 (1242)
..+.-.+++++..++.++++ ++| ...-+...++++.|||++..+=-+|.|.+-.|.
T Consensus 92 ~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~ 167 (340)
T PF11104_consen 92 EAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFE 167 (340)
T ss_dssp HHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGH
T ss_pred HHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHH
Confidence 34556677777766555433 222 344666788999999999888777777655443
Q ss_pred cC-----CCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy5911 182 LD-----KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGD 256 (1242)
Q Consensus 182 ~~-----~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~ 256 (1242)
.. .......++++|+|+.++.++++.-+. +.. ......||.++++.+.+.+.-.
T Consensus 168 ~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~------~~f---~R~i~~G~~~l~~~i~~~~~i~------------ 226 (340)
T PF11104_consen 168 FLEPQLPDEEDAETVALVDIGASSTTVIIFQNGK------PIF---SRSIPIGGNDLTEAIARELGID------------ 226 (340)
T ss_dssp HHHHTST----T-EEEEEEE-SS-EEEEEEETTE------EEE---EEEES-SHHHHHHHHHHHTT--------------
T ss_pred HHHHhCCcccccceEEEEEecCCeEEEEEEECCE------EEE---EEEEeeCHHHHHHHHHHhcCCC------------
Confidence 31 112456789999999999999986322 111 1123579999999998764322
Q ss_pred HHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCcCC
Q psy5911 257 SLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALN--DAKIDKSK 334 (1242)
Q Consensus 257 ~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~--~~~~~~~~ 334 (1242)
..+||+.|..-+-.. +...+.+.+.++++...|++.++ .+......
T Consensus 227 -------~~~Ae~~k~~~~l~~-------------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~ 274 (340)
T PF11104_consen 227 -------FEEAEELKRSGGLPE-------------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGES 274 (340)
T ss_dssp -------HHHHHHHHHHT-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred -------HHHHHHHHhcCCCCc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 346677776421100 22345566666666666666666 22234457
Q ss_pred cceEEEecCccChHHHHHHHHHhccccccc---------CC----------CcchhhHhHHHHhh
Q psy5911 335 ISEIILVGGQTRMPLVQKMVSEFFEKEVKK---------DI----------NPDEAVAVGASVQA 380 (1242)
Q Consensus 335 i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~---------~~----------~p~~ava~GAa~~a 380 (1242)
|+.|+|+||++++|.+.+.|++.++.++.. +. .|..++|.|.|+.+
T Consensus 275 i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 275 IERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp -SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 999999999999999999999999765431 11 36678999999864
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=114.07 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=126.6
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHHHHc---------CCceeeeechhHHHHHHccCCCC---CCCcEEEEEeeCCCceE
Q psy5911 775 KIEKAVITVPAYFNDSQRQATKDAGKIA---------GLEVLRIINEPTAAALAYGLDKK---PDDRIIVVYDLGGGTFD 842 (1242)
Q Consensus 775 ~~~~~VitVPa~~~~~qr~~~~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~~---~~~~~vlV~D~GggT~d 842 (1242)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..+.. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3567999999999999999998876532 23457899999999887754321 24566899999999999
Q ss_pred EEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeE
Q psy5911 843 ISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI 922 (1242)
Q Consensus 843 vsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 922 (1242)
+.++. + ..+ +...++....|..++-+.+.+.+.+++. .+...+... +..+.+.-|. +
T Consensus 181 ~~~~~--~----~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~~---i~~~l~~g~~---------~ 237 (320)
T TIGR03739 181 WLVAR--G----MRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDIDR---IDLALRTGKQ---------P 237 (320)
T ss_pred eehcc--C----CEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHHH---HHHHHHhCCc---------e
Confidence 98774 1 222 3444555667888887777777766654 221011111 1111111110 0
Q ss_pred EeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcc-c
Q psy5911 923 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK-E 1001 (1242)
Q Consensus 923 ~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~-~ 1001 (1242)
.+ .+ -.+.|+ +.-+.....++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+. .
T Consensus 238 ~~--------~g--k~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~ 299 (320)
T TIGR03739 238 RI--------YQ--KPVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHR 299 (320)
T ss_pred ee--------cc--eecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCe
Confidence 00 00 112222 2222333444444443433332 1245899999999998 567889999975 4
Q ss_pred ccccCCcchhhhhhHHHhh
Q psy5911 1002 VKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 1002 v~~~~~p~~aVa~GAa~~a 1020 (1242)
+....||..|.|+|-..++
T Consensus 300 i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 300 IVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred eEecCCcHHHHHHHHHHhh
Confidence 5567899999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=102.01 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=123.1
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEec--------CCcEEEcHHHHHhhhhCCCchhhhchhhhC
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE--------DNRIIVGLPAKRQAITNPNNTLYAIKRLIG 75 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--------~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg 75 (1242)
..|-||.|+..+.+++....-|..+ +||++...- .+..+++..|...
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~----------------- 66 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV----------------- 66 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC-----------------
Confidence 3578999999999999877766544 488776421 1122444443321
Q ss_pred CCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHH
Q psy5911 76 RKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 155 (1242)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~ 155 (1242)
+. ++..+.-.+++..+...++..+.++|..+.-.. ....-..++||-|++=+.+.|+.+
T Consensus 67 -pr-------------------~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~ 125 (426)
T KOG0679|consen 67 -PR-------------------PGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKL 125 (426)
T ss_pred -CC-------------------CCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHH
Confidence 00 111122223345566788888999888854322 233345689999998889999887
Q ss_pred HHH-HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHH
Q psy5911 156 KDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234 (1242)
Q Consensus 156 ~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD 234 (1242)
.+. .+...++...|..+|+++|++-|. .+-||+|+|++++.++-+.- |.+-..+.. -..+||+.++
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~Gr------stalVvDiGa~~~svsPV~D------G~Vlqk~vv-ks~laGdFl~ 192 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGR------STALVVDIGATHTSVSPVHD------GYVLQKGVV-KSPLAGDFLN 192 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCC------CceEEEEecCCCceeeeeec------ceEeeeeeE-ecccchHHHH
Confidence 765 567788899999999999998764 35688899999999997752 222222222 3568999999
Q ss_pred HHHHHHHHHH
Q psy5911 235 MRIINHLIYE 244 (1242)
Q Consensus 235 ~~l~~~l~~~ 244 (1242)
..+.++|..+
T Consensus 193 ~~~~q~l~~~ 202 (426)
T KOG0679|consen 193 DQCRQLLEPK 202 (426)
T ss_pred HHHHHHHhhc
Confidence 9999998755
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=113.06 Aligned_cols=172 Identities=19% Similarity=0.275 Sum_probs=97.0
Q ss_pred CeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEE-EEEecCCCCcchHHHHHHHHHHHHH
Q psy5911 165 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE-VLSTNGDTFLGGEDFDMRIINHLIY 243 (1242)
Q Consensus 165 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~-v~~~~~~~~lGG~~iD~~l~~~l~~ 243 (1242)
..+.+++||.||.+.+..... +...+||+|+||+|+|++++. +.+. +-...+...+|-..+-..+.+.|..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~-------~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVR-------GGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEE-------GGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeec-------CCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 457889999999998866533 346789999999999999885 2222 2234455578988888887776654
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 323 (1242)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 323 (1242)
. . .+. +. ..++++-.... ....+. ....+ .=..+++.++++..++++.+-|.+
T Consensus 213 ~-~----~~~--s~-------~~~~~ii~~~~--~~~~~~--~~i~~---------~~~~~~v~~~i~~~~~~l~~~i~~ 265 (318)
T PF06406_consen 213 A-G----IDT--SE-------LQIDDIIRNRK--DKGYLR--QVIND---------EDVIDDVSEVIEEAVEELINRILR 265 (318)
T ss_dssp --S----BHH--HH-------HHHHHHHHTTT---HHHHH--HHSSS---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-c----CCC--cH-------HHHHHHHHhhh--ccceec--ccccc---------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 000 00 01111100000 000000 00000 001344455555555555555555
Q ss_pred HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcc---cccccCCCcchhhHhHHH
Q psy5911 324 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE---KEVKKDINPDEAVAVGAS 377 (1242)
Q Consensus 324 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~---~~~~~~~~p~~ava~GAa 377 (1242)
.+.+ ..+++.|+||||++. .+.+.|++.|+ ..+....||..|-|+|-+
T Consensus 266 ~~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 266 ELGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHhh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5432 346889999999975 67888999986 357788999999999954
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=109.86 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHcCCceeeeechhHHHHHHcc-----CCCCCCCc-EEEEEeeCCCceEEEEEEEeecCCCceEEEEE
Q psy5911 788 NDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG-----LDKKPDDR-IIVVYDLGGGTFDISVIEIANVDGETQFEVLS 861 (1242)
Q Consensus 788 ~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~-----~~~~~~~~-~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~ 861 (1242)
.....+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|++++++++++-.. + .
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~------~---~ 211 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGR------M---L 211 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCe------E---E
Confidence 3456778899999999999999999999876652 22222233 378889999999999996332 1 1
Q ss_pred ecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEE
Q psy5911 862 TNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 941 (1242)
Q Consensus 862 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~i 941 (1242)
......+||.++++.+.+.+ +.+ ...||+.|..-+.... .
T Consensus 212 ~~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~-----------------~---- 251 (348)
T TIGR01175 212 FTREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL-----------------Y---- 251 (348)
T ss_pred EEEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc-----------------h----
Confidence 12234579999998886543 111 3577877764321100 0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccCcceEEEecCcCchHHHHHHHHhhhcccccc---------------
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALNDA--KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK--------------- 1004 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~--------------- 1004 (1242)
-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.|+.++..
T Consensus 252 ----~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~ 327 (348)
T TIGR01175 252 ----DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDA 327 (348)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCH
Confidence 02345666666766677776532 222345999999999999999999999999865431
Q ss_pred ----cCCcchhhhhhHHHhh
Q psy5911 1005 ----DINPDEAVAVGASVQA 1020 (1242)
Q Consensus 1005 ----~~~p~~aVa~GAa~~a 1020 (1242)
...|..++|.|+|+++
T Consensus 328 ~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 328 GRLAVDAPALMTALGLALRG 347 (348)
T ss_pred HHHHhhhHHHHHHhhHhhcC
Confidence 1334667788887764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-07 Score=104.07 Aligned_cols=193 Identities=16% Similarity=0.129 Sum_probs=120.8
Q ss_pred EEEEcCccceEEEEEECCeEEEEe-CCCCCcc-cceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHH
Q psy5911 6 IGIDLGTTNSCVAVLNNGKPQVIE-NSEGGRT-TPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 83 (1242)
Q Consensus 6 vGID~GTt~s~va~~~~g~~~ii~-~~~g~~~-~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 83 (1242)
+-||.||..+++++..+..|..+. +..+.+. ..++..-...+...+|.++...... +
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~-------------------- 67 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-S-------------------- 67 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-c--------------------
Confidence 889999999999999887776553 3333332 2222221112233445444321100 0
Q ss_pred HHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHH-HhHhcCCCCcEEEEecCCCCHHHHHHHHH-HHHH
Q psy5911 84 QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTA-ETFLNEKIEKAVITVPAYFNDSQRQATKD-AGKI 161 (1242)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a-~~~~~~~~~~~vitVPa~f~~~qr~~~~~-Aa~~ 161 (1242)
.......+....+...+....+++++...- .......-..+++|-|..+...+|+.+.+ ..+.
T Consensus 68 ---------------~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~ 132 (444)
T COG5277 68 ---------------LLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFET 132 (444)
T ss_pred ---------------cceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHh
Confidence 001111223344555667777777776653 11112223479999999999999988765 4567
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
..++.+.+..++.+++++.+... .+.+|+|+|.+.++|+-+--+ +.+.....-..+||++++..|.+.|
T Consensus 133 ~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG-------~~l~~a~~ri~~gG~~it~~l~~lL 201 (444)
T COG5277 133 LNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDG-------IVLPKAVKRIDIGGRDITDYLKKLL 201 (444)
T ss_pred cCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeecc-------ccccccceeeecCcHHHHHHHHHHH
Confidence 78888888888888888776532 467899999999999877422 2222223334579999999998888
Q ss_pred HHHH
Q psy5911 242 IYEF 245 (1242)
Q Consensus 242 ~~~~ 245 (1242)
....
T Consensus 202 ~~~~ 205 (444)
T COG5277 202 REKY 205 (444)
T ss_pred hhcc
Confidence 7643
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-06 Score=93.23 Aligned_cols=171 Identities=17% Similarity=0.189 Sum_probs=100.7
Q ss_pred eeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHH
Q psy5911 168 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 247 (1242)
Q Consensus 168 ~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~ 247 (1242)
..++|.+|-+.+...-.+ ..+ .|+|+||..+-+..++ + +.+.-.........|+..|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~~-~~~--~vidiGgqd~k~i~~~--~----g~~~~~~~n~~ca~Gtg~f~e~~a~~l~----- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP-EAR--GVIDIGGQDSKVIKID--D----GKVDDFTMNDKCAAGTGRFLEVTARRLG----- 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC-CCC--EEEEecCCeeEEEEEC--C----CcEeeeeecCcccccccHHHHHHHHHcC-----
Confidence 467788887655432222 222 4779999988877775 3 3443333444455677777777665542
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhHHhcC----CceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 248 ENGVDLSGDSLAMQRLKEAAEKAKIELSN----AEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 323 (1242)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 323 (1242)
++ .++++.++..-.. +....+..+.-.. ..+.-..++ ++++..+++.+...+.+
T Consensus 139 ---~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi-----~~l~~g~~~---~di~~~~~~~va~~i~~ 196 (248)
T TIGR00241 139 ---VS-----------VEELGSLAEKADRKAKISSMCTVFAESELI-----SLLAAGVKK---EDILAGVYESIAERVAE 196 (248)
T ss_pred ---CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHH-----HHHHCCCCH---HHHHHHHHHHHHHHHHH
Confidence 21 1233333322100 0011111100000 000001122 34566666666666666
Q ss_pred HHHHcCCCcCCcc-eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 324 ALNDAKIDKSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 324 ~l~~~~~~~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
.+...+ ++ .|+|+||.++.|++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 197 ~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 197 MLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 665443 44 7999999999999999999999999999999999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=105.91 Aligned_cols=178 Identities=20% Similarity=0.242 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHHccC-----CCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecC
Q psy5911 790 SQRQATKDAGKIAGLEVLRIINEPTAAALAYGL-----DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 864 (1242)
Q Consensus 790 ~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~-----~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~ 864 (1242)
..-+...++++.|||++..+=-+|.|.+-.+.. ........++++|+|+.++.++++.-.. +. ...
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~------~~---f~R 206 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGK------PI---FSR 206 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTE------EE---EEE
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCE------EE---EEE
Confidence 445667888999999998777777776544433 1112346789999999999999987332 11 112
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHH
Q psy5911 865 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 944 (1242)
Q Consensus 865 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~ 944 (1242)
....||.++++.+.+.+.-. ..++|+.|..-+-. .+
T Consensus 207 ~i~~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~-------------------------~~ 242 (340)
T PF11104_consen 207 SIPIGGNDLTEAIARELGID-------------------FEEAEELKRSGGLP-------------------------EE 242 (340)
T ss_dssp EES-SHHHHHHHHHHHTT---------------------HHHHHHHHHHT------------------------------
T ss_pred EEeeCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCC-------------------------cc
Confidence 34579999999998764322 34666666542100 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcCCCccCcceEEEecCcCchHHHHHHHHhhhccccc---------ccC-------
Q psy5911 945 KLESLVEDLISKSLKPCEVALN--DAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK---------KDI------- 1006 (1242)
Q Consensus 945 ~fe~~~~~~~~~~~~~i~~~l~--~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~---------~~~------- 1006 (1242)
...+.+.+.++++...|.+.++ .+......|+.|+|+||++++|.+.+.|++.++.++. .+.
T Consensus 243 ~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~ 322 (340)
T PF11104_consen 243 YDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYL 322 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhh
Confidence 2345566667777777777766 2223345799999999999999999999999986543 111
Q ss_pred ---CcchhhhhhHHHhh
Q psy5911 1007 ---NPDEAVAVGASVQA 1020 (1242)
Q Consensus 1007 ---~p~~aVa~GAa~~a 1020 (1242)
.|..++|.|.|++.
T Consensus 323 ~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 323 QEDAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcC
Confidence 26678999999864
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-06 Score=88.00 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCCCeeeeechHHHHHHHhccC-----CCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCC
Q psy5911 152 RQATKDAGKIAGLEVLRIINEPTAAALAYGLD-----KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 226 (1242)
Q Consensus 152 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~-----~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~ 226 (1242)
-....+|++.|||+..-+=-|.-|.--+|... .....-.++|+|+|+..+.++++.-+. ..|+ .+.
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk----~ly~-----r~~ 221 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK----ILYT-----REV 221 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe----eeeE-----eec
Confidence 34457899999999887877888876666421 112233478999999999999987443 2222 245
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHH
Q psy5911 227 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 306 (1242)
Q Consensus 227 ~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~f 306 (1242)
.+||+.+.+.+.+.+ +.+ ...++.+|....... +--
T Consensus 222 ~~g~~Qlt~~i~r~~--------~L~-----------~~~a~~~k~~~~~P~-------------------------~y~ 257 (354)
T COG4972 222 PVGTDQLTQEIQRAY--------SLT-----------EEKAEEIKRGGTLPT-------------------------DYG 257 (354)
T ss_pred cCcHHHHHHHHHHHh--------CCC-----------hhHhHHHHhCCCCCC-------------------------chh
Confidence 679999998876542 222 235667776543211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--cCCCcCCcceEEEecCccChHHHHHHHHHhcccc
Q psy5911 307 ESLVEDLISKSLKPCEVALND--AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361 (1242)
Q Consensus 307 e~l~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~ 361 (1242)
.++..++++.+...|.+.|+- +.-...+|+.|+|.||++.+-.+.+.+.+.++.+
T Consensus 258 ~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 258 SEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 234555555555555555542 1223456999999999999999999999998754
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-06 Score=92.15 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcEEE
Q psy5911 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 832 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 832 (1242)
=++..+.++|..+.-.. .+..-.-++||-|++=+.+.|+.+.+. .+...++...+..+|+++|++.|.. +-|
T Consensus 85 WD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs------tal 157 (426)
T KOG0679|consen 85 WDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRS------TAL 157 (426)
T ss_pred HHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCC------ceE
Confidence 36677777777643222 222234689999999999999887764 5777888999999999999988753 468
Q ss_pred EEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 833 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 833 V~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
|+|+|++++.++-+.= |.+-..+. --..+||+.++..+.++|..+
T Consensus 158 VvDiGa~~~svsPV~D------G~Vlqk~v-vks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 158 VVDIGATHTSVSPVHD------GYVLQKGV-VKSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEecCCCceeeeeec------ceEeeeee-EecccchHHHHHHHHHHHhhc
Confidence 8899999999998752 22222222 335689999999999998765
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=97.87 Aligned_cols=336 Identities=20% Similarity=0.262 Sum_probs=188.8
Q ss_pred EEEcHHHHHhhh----hCCCchhhhchhhhCCC--------CCChHH--HH--HhccCCeEEEecCCCCeEEEE-c----
Q psy5911 49 IIVGLPAKRQAI----TNPNNTLYAIKRLIGRK--------YTDEIV--QT--VLKMVPYKIVAADNGDAWVEV-K---- 107 (1242)
Q Consensus 49 ~~vG~~A~~~~~----~~~~~~~~~~k~~lg~~--------~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~-~---- 107 (1242)
+-||.+|..... ......+++.||+|... |+.... +. .....|+.-..++.|.+.+.+ .
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 348988876543 23445577889988743 111110 00 011222333345566665544 1
Q ss_pred ----CeecChHHHHHHHHHHHHHHHHhHhcCC--------------CCcEEEEecCCCCHHHHHHHHHHHHHc-------
Q psy5911 108 ----DKKLAPPQISAEILKKMKSTAETFLNEK--------------IEKAVITVPAYFNDSQRQATKDAGKIA------- 162 (1242)
Q Consensus 108 ----~~~~~~~~v~a~~L~~l~~~a~~~~~~~--------------~~~~vitVPa~f~~~qr~~~~~Aa~~A------- 162 (1242)
.-.+|=.-+..++|..+..+|.-+.+.+ .+++++|||..-.-.+|+.++++++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1235556677788888877776655432 557999999999999999988887765
Q ss_pred -CCC---------------------eeeeechHHHHHHHhccC------------------C--C--------CCCcEEE
Q psy5911 163 -GLE---------------------VLRIINEPTAAALAYGLD------------------K--K--------PDDRIIV 192 (1242)
Q Consensus 163 -Gl~---------------------~~~li~Ep~AAal~y~~~------------------~--~--------~~~~~vl 192 (1242)
|.. +..=-+|.||.=+-|.+. + . ...-.|.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 431 111135666655444221 1 0 1234688
Q ss_pred EEEeCCcceeeeEEEEEeecCCc-eEEEE---EecCCCCcchHHHHHHHHHHH-HHHHHH----------------hcCC
Q psy5911 193 VYDLGGGTFDISVIEIANVDGET-QFEVL---STNGDTFLGGEDFDMRIINHL-IYEFKI----------------ENGV 251 (1242)
Q Consensus 193 V~D~GggT~Dvsv~~~~~~~~~~-~~~v~---~~~~~~~lGG~~iD~~l~~~l-~~~~~~----------------~~~~ 251 (1242)
-+|+||||||+.|-.+.-..+.+ ...+. --.-+-.+.|+||=..+++.+ ...+.. -+|.
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 89999999999998876322212 11111 112234568888877666544 322221 1121
Q ss_pred CCCCCH-H-------------HHHHHHHHHHHHhH-------------Hhc-CCceeeeeccccc-------cCC--CCC
Q psy5911 252 DLSGDS-L-------------AMQRLKEAAEKAKI-------------ELS-NAEQTDINLPYIT-------ADK--NGP 294 (1242)
Q Consensus 252 ~~~~~~-~-------------~~~~L~~~~e~~K~-------------~Ls-~~~~~~i~i~~~~-------~~~--~~~ 294 (1242)
+-.... + ...+++.++|+.=. -|. ...+..+ +.++. .+. -.-
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~v-l~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAV-LDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHH-HHHHHHHHhhcCCCCCCcce
Confidence 200000 0 01234455554321 011 0000000 00000 000 111
Q ss_pred eeeEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccc--------
Q psy5911 295 KHLNVKITRSKLESLVE---DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK-------- 363 (1242)
Q Consensus 295 ~~~~~~itr~~fe~l~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~-------- 363 (1242)
.++.+.|+..++...+. -.+.+++..+-+++...+ .|.++|+|--||+|.||.++++....++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34568899999998775 566666666666766544 67899999999999999999998854432
Q ss_pred ------------cCCCcchhhHhHHHHhhhhhcCCccce
Q psy5911 364 ------------KDINPDEAVAVGASVQAGVLSGVVKDV 390 (1242)
Q Consensus 364 ------------~~~~p~~ava~GAa~~a~~l~~~~~~~ 390 (1242)
.-.||.+.||.||.+++.......+++
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF 842 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNF 842 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCc
Confidence 235999999999988765444234444
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.6e-06 Score=100.38 Aligned_cols=337 Identities=19% Similarity=0.237 Sum_probs=192.0
Q ss_pred EEcHHHHHHhh----hCCcchhhHHHHhcCCCCC--------ChhH--Hh--hcccCceEEEEcCCCCeEEEE-c--C--
Q psy5911 690 IVGLPAKRQAI----TNPNNTLYAIKRLIGRKYT--------DEIV--QK--DIKMVPYKIVAADNGDAWVEV-K--D-- 748 (1242)
Q Consensus 690 ~~G~~A~~~~~----~~p~~~~~~~krllg~~~~--------d~~~--~~--~~~~~~~~~~~~~~~~~~~~~-~--~-- 748 (1242)
-||.+|...+. +.....+.+.||+|+.... .... +. .....|+....++.|.+.+.+ . .
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 47888875432 3455567789999985421 1110 00 112223333345666666655 1 1
Q ss_pred ----eeeChHHHHHHHHHHHHHHHHhHhCCC--------------CCcEEEEecCCCCHHHHHHHHHHHHHc--------
Q psy5911 749 ----QYCAPPQISAEILKKMKSTAETFLNEK--------------IEKAVITVPAYFNDSQRQATKDAGKIA-------- 802 (1242)
Q Consensus 749 ----~~~~~~~v~a~~L~~l~~~a~~~~~~~--------------~~~~VitVPa~~~~~qr~~~~~Aa~~A-------- 802 (1242)
-.|+-.-+..++|..|..+|.-+++.+ ..++++|||......+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 245556778888888877776555432 457999999999999999999888765
Q ss_pred CCc---------------------eeeeechhHHHHHHccCC------------------C-C---------CCCcEEEE
Q psy5911 803 GLE---------------------VLRIINEPTAAALAYGLD------------------K-K---------PDDRIIVV 833 (1242)
Q Consensus 803 Gl~---------------------~~~li~Ep~AAal~y~~~------------------~-~---------~~~~~vlV 833 (1242)
|.. +..=-+|.||.=+-|.+. + . .+.-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111125666654433221 0 0 11235888
Q ss_pred EeeCCCceEEEEEEEeecCCCc-eEEEEE---ecCCCCCCchHHHHHHHHHH-HHHhhh----------------hcCCC
Q psy5911 834 YDLGGGTFDISVIEIANVDGET-QFEVLS---TNGDTFLGGEDFDMRIINHL-IYEFKI----------------ENGVD 892 (1242)
Q Consensus 834 ~D~GggT~dvsi~~~~~~~~~~-~~~v~~---~~~~~~lGG~~~D~~l~~~l-~~~~~~----------------~~~~~ 892 (1242)
+|+||||||+.|-++.-..+.+ ...+.. -.-+-.+.|+|+=..+++.+ ...+.. -+|.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998876322212 222211 11234478988877666554 222221 11212
Q ss_pred CCCCH-H-------------HHHHHHHHHHHhhhhccCCceeeEEec--------------cccc-------cC--CCCe
Q psy5911 893 LSGDS-L-------------AMQRLKEAAEKAKIELSNAEQTDINLP--------------YITA-------DK--NGPK 935 (1242)
Q Consensus 893 ~~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~i~i~--------------~~~~-------~~--~~~~ 935 (1242)
-.... + ...+++.++|..-..-.. ......+. ++.. +. -...
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~-~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPS-AEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC-ccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 00000 0 112355555553321000 00011110 1110 00 1123
Q ss_pred eeEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhccccc---------
Q psy5911 936 HLNVKITRSKLESLVE---DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK--------- 1003 (1242)
Q Consensus 936 ~~~~~itr~~fe~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~--------- 1003 (1242)
+..+.|+..++...+. -.+.+++..+-+++...+ .|-++|+|--||+|.|+.+++.....++.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4568899999998775 666677776777776554 67899999999999999999998855432
Q ss_pred -----------ccCCcchhhhhhHHHhhhhhcccccceEE
Q psy5911 1004 -----------KDINPDEAVAVGASVQAGVLSGVVKDVLL 1032 (1242)
Q Consensus 1004 -----------~~~~p~~aVa~GAa~~a~~l~~~~~~~~~ 1032 (1242)
+--||...||.||.+.+-......+++.+
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~f 844 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFYF 844 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCceE
Confidence 34589999999997765433324445443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=97.17 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=56.4
Q ss_pred cEEEEecCCCCHHHHHHHHHHHH--------HcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEE
Q psy5911 138 KAVITVPAYFNDSQRQATKDAGK--------IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIA 209 (1242)
Q Consensus 138 ~~vitVPa~f~~~qr~~~~~Aa~--------~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~ 209 (1242)
-.+||-++..-.+-++.+..+.. .||+++..++. |.|++.+...+ +++..++++|+||||+++++++-.
T Consensus 90 ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--Eke~gVa~IDIGgGTT~iaVf~~G 166 (475)
T PRK10719 90 AVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--ERNTRVLNIDIGGGTANYALFDAG 166 (475)
T ss_pred EEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--hccCceEEEEeCCCceEEEEEECC
Confidence 46778776554444444433211 26777777766 99998887643 567778889999999999999754
Q ss_pred eecCCceEEEEEecCCCCcchHHHH
Q psy5911 210 NVDGETQFEVLSTNGDTFLGGEDFD 234 (1242)
Q Consensus 210 ~~~~~~~~~v~~~~~~~~lGG~~iD 234 (1242)
. + ...+...+||+.+.
T Consensus 167 ~--------l-~~T~~l~vGG~~IT 182 (475)
T PRK10719 167 K--------V-IDTACLNVGGRLIE 182 (475)
T ss_pred E--------E-EEEEEEecccceEE
Confidence 3 2 22233456888765
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=96.35 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=96.6
Q ss_pred ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEE-EEEecCCCCCCchHHHHHHHHHHHH
Q psy5911 805 EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE-VLSTNGDTFLGGEDFDMRIINHLIY 883 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~-v~~~~~~~~lGG~~~D~~l~~~l~~ 883 (1242)
..+.+++||.||.+.+..... +...+||+|+||+|+|++++. +.+. +....+...+|-..+-..+.+.+..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~-------~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVR-------GGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEE-------GGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeec-------CCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 457889999999998865533 345688999999999999986 2222 2233445567888877777776654
Q ss_pred HhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy5911 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEV 963 (1242)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~ 963 (1242)
... .. +.. .++++-..... .. .+..... ..-..+++.++++..++++.+.|.+
T Consensus 213 ~~~-~~------s~~-------~~~~ii~~~~~--~~-----~~~~~i~------~~~~~~~v~~~i~~~~~~l~~~i~~ 265 (318)
T PF06406_consen 213 AGI-DT------SEL-------QIDDIIRNRKD--KG-----YLRQVIN------DEDVIDDVSEVIEEAVEELINRILR 265 (318)
T ss_dssp -SB-HH------HHH-------HHHHHHHTTT---HH-----HHHHHSS------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CC------cHH-------HHHHHHHhhhc--cc-----eeccccc------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00 000 11111000000 00 0000000 0001344555555555555555555
Q ss_pred HHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc---ccccccCCcchhhhhhHH
Q psy5911 964 ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE---KEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 964 ~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~---~~v~~~~~p~~aVa~GAa 1017 (1242)
.+.+ ..+++.|+||||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 266 ~~~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 266 ELGD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHTT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHhh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5543 246889999999985 57888999986 467788999999999953
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-05 Score=89.98 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHH-HhHhCCCCCcEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHccCCCCCCCcEEE
Q psy5911 755 QISAEILKKMKSTA-ETFLNEKIEKAVITVPAYFNDSQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 832 (1242)
Q Consensus 755 ~v~a~~L~~l~~~a-~~~~~~~~~~~VitVPa~~~~~qr~~~~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 832 (1242)
+....+++++...- .......-..+++|-|..+...+|..+-+ ..+...++.+.+..++.+++++.+... .+.+
T Consensus 84 ~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ 159 (444)
T COG5277 84 DAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGL 159 (444)
T ss_pred HHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceE
Confidence 34445555554442 11112223469999999999999988766 557778888888888888888776642 4678
Q ss_pred EEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHh
Q psy5911 833 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 885 (1242)
Q Consensus 833 V~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~ 885 (1242)
|+|+|.+.++++-+-=. +.+.....-..+||++++..|.+.|....
T Consensus 160 ViD~G~~~t~v~PV~DG-------~~l~~a~~ri~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 160 VIDSGDSVTHVIPVVDG-------IVLPKAVKRIDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred EEEcCCCceeeEeeecc-------ccccccceeeecCcHHHHHHHHHHHhhcc
Confidence 89999999999977522 22333333456899999999999887743
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-05 Score=85.98 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=43.1
Q ss_pred eEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 337 EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 337 ~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
.|+++||.++.+.+.+.+++.++.++..+.+|..+.|.|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 599999999999999999999999999999999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00026 Score=77.15 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=42.0
Q ss_pred eEEEecCccChHHHHHHHHHhcccccc-cCCCcchhhHhHHHHhhhh
Q psy5911 337 EIILVGGQTRMPLVQKMVSEFFEKEVK-KDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 337 ~ViLvGG~s~ip~v~~~l~~~f~~~~~-~~~~p~~ava~GAa~~a~~ 382 (1242)
.|+|+||.++.|.+.+.+++.++.++. .+.+|..+.|.|||++|..
T Consensus 242 ~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 589999999999999999999998877 5778999999999999853
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=78.03 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 307 ESLVEDLISKSLKPCEV-ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 307 e~l~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
|.++..+...+..-+-. +++...+.. -|+|+||.+....+.+++++.+|.++..+.+|...-|.|||+++..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 44455555554443333 555443322 2999999999999999999999999999999999999999999854
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=8e-05 Score=83.79 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=123.9
Q ss_pred ecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCCCC
Q psy5911 110 KLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDD 188 (1242)
Q Consensus 110 ~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~ 188 (1242)
.++-.+-...+++|+...-.... .....+++|-|..+...-|+.|.+.. +..+.+-+.+ .-.|..++++.
T Consensus 74 iv~~wd~me~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~------ 144 (372)
T KOG0676|consen 74 IVTDWDDMEKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGR------ 144 (372)
T ss_pred cccchHHHHHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCC------
Confidence 34445555777777773222211 22357999999999999999887754 3334444333 22332323332
Q ss_pred cEEEEEEeCCcce-eeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy5911 189 RIIVVYDLGGGTF-DISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 267 (1242)
Q Consensus 189 ~~vlV~D~GggT~-Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 267 (1242)
.+=+|+|+|.|-+ -+-+++ -+.+.+.-....+||+|+...+...|.+ .+....... -++-+
T Consensus 145 ttG~VvD~G~gvt~~vPI~e--------G~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv 206 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYE--------GYALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIV 206 (372)
T ss_pred eeEEEEEcCCCceeeeeccc--------ccccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHH
Confidence 2347889999966 444543 2233334445668999999877666655 222221111 12235
Q ss_pred HHHhHHhcCCc------------eeeeeccccccCCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHH
Q psy5911 268 EKAKIELSNAE------------QTDINLPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALND 327 (1242)
Q Consensus 268 e~~K~~Ls~~~------------~~~i~i~~~~~~~~~~~~~~~~itr~~fe---~l~~~~~-----~~i~~~i~~~l~~ 327 (1242)
+.+|+.++... ...+...+. ..++. .+.+.-+.|. -+++|-+ ..+.+.+-+.+.+
T Consensus 207 ~diKeklCyvald~~~e~~~~~~~~~l~~~y~--lPDg~---~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~k 281 (372)
T KOG0676|consen 207 RDIKEKLCYVALDFEEEEETANTSSSLESSYE--LPDGQ---KITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMK 281 (372)
T ss_pred HHhHhhhcccccccchhhhccccccccccccc--CCCCC---EEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHh
Confidence 55555554221 111111111 11111 1444444433 2333322 1222333333333
Q ss_pred cC--CCcCCcceEEEecCccChHHHHHHHHHhcc--------cccccCCCcchhhHhHHHHhhh
Q psy5911 328 AK--IDKSKISEIILVGGQTRMPLVQKMVSEFFE--------KEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 328 ~~--~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
+. +.+.-...|+|+||++..|.+.+++.+... .++..+.+...+|=.|+++.|.
T Consensus 282 cd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 282 CDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred CChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 32 223336779999999999999998877652 1122333333455567666654
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=80.03 Aligned_cols=170 Identities=17% Similarity=0.196 Sum_probs=100.2
Q ss_pred eeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhh
Q psy5911 808 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887 (1242)
Q Consensus 808 ~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~ 887 (1242)
..++|.+|-+.+...-.. ..+ .|+|+||..+-+..++ . +.+.-.........|+-.|.+.+.+.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~~-~~~--~vidiGgqd~k~i~~~-~-----g~~~~~~~n~~ca~Gtg~f~e~~a~~l~----- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP-EAR--GVIDIGGQDSKVIKID-D-----GKVDDFTMNDKCAAGTGRFLEVTARRLG----- 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC-CCC--EEEEecCCeeEEEEEC-C-----CcEeeeeecCcccccccHHHHHHHHHcC-----
Confidence 467788776654432221 222 4779999998888886 2 3333233444445577767666665532
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHhhhhccC----CceeeEEecc-ccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSN----AEQTDINLPY-ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 888 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----~~~~~i~i~~-~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++ .++++..+..-.. +....+..+. +... +.-..++ ++++..++..+...+.
T Consensus 139 ---~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~------l~~g~~~---~di~~~~~~~va~~i~ 195 (248)
T TIGR00241 139 ---VS-----------VEELGSLAEKADRKAKISSMCTVFAESELISL------LAAGVKK---EDILAGVYESIAERVA 195 (248)
T ss_pred ---CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHH------HHCCCCH---HHHHHHHHHHHHHHHH
Confidence 11 1223333222100 0111111110 0000 0001222 4566666666666666
Q ss_pred HHHHhcCCCccCcc-eEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 963 VALNDAKIDKSKIS-EIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~-~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
+.+...+ ++ .|+|+||.++.|.+.+.+++.++.++..+.+|..+.|+|||++
T Consensus 196 ~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 196 EMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 6665443 44 7999999999999999999999999999999999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0003 Score=73.70 Aligned_cols=193 Identities=21% Similarity=0.237 Sum_probs=102.2
Q ss_pred HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHH
Q psy5911 159 GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 238 (1242)
Q Consensus 159 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~ 238 (1242)
-+..|.++.--=-|+.+|.+....... .+..+.++|+|||++|.|++.-. +.+.-+.-.| .|+.++..|.
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~-----g~v~~iHlAG----AG~mVTmlI~ 174 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRD-----GEVTAIHLAG----AGNMVTMLIN 174 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TT-----S-EEEEEEE-----SHHHHHHHHH
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCC-----CcEEEEEecC----CchhhHHHHH
Confidence 345688888888899999998754433 45668999999999999998633 5666666666 6777766554
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc-----------eeeeeccccccC---------CCCCeeeE
Q psy5911 239 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-----------QTDINLPYITAD---------KNGPKHLN 298 (1242)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~~~~~~---------~~~~~~~~ 298 (1242)
.. .+++. +.-||.+|+---..- +..+.-..+... .++...+.
T Consensus 175 sE--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~ 236 (332)
T PF08841_consen 175 SE--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIP 236 (332)
T ss_dssp HH--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEES
T ss_pred Hh--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecC
Confidence 32 23211 446788887421110 000000000000 01111122
Q ss_pred EEEcHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CcCCcceEEEecCccChHHHHHHHHHhc-------c-cccccCCC
Q psy5911 299 VKITRSKLESLVEDLISKS-LKPCEVALNDAKI--DKSKISEIILVGGQTRMPLVQKMVSEFF-------E-KEVKKDIN 367 (1242)
Q Consensus 299 ~~itr~~fe~l~~~~~~~i-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f-------~-~~~~~~~~ 367 (1242)
..++-+++..+=...=+++ ..-+-++|++... +..+|+.|+|||||+.=.-|-+++.+.+ | -++.-..-
T Consensus 237 ~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eG 316 (332)
T PF08841_consen 237 GDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEG 316 (332)
T ss_dssp STS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTST
T ss_pred CCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccC
Confidence 2233344433333222222 2233445554332 2356999999999997555555555554 2 24666778
Q ss_pred cchhhHhHHHHh
Q psy5911 368 PDEAVAVGASVQ 379 (1242)
Q Consensus 368 p~~ava~GAa~~ 379 (1242)
|..|||.|.++.
T Consensus 317 PRNAVATGLvls 328 (332)
T PF08841_consen 317 PRNAVATGLVLS 328 (332)
T ss_dssp TSTHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 999999998774
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0023 Score=70.70 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=42.9
Q ss_pred CcceEEEec-CccChHHHHHHHHHhc---ccccccCCCcchhhHhHHHHhhh
Q psy5911 334 KISEIILVG-GQTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 334 ~i~~ViLvG-G~s~ip~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 7999999999999988 67788899999999999999874
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.001 Score=71.95 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHccCC-----CCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCC
Q psy5911 792 RQATKDAGKIAGLEVLRIINEPTAAALAYGLD-----KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 866 (1242)
Q Consensus 792 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~-----~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~ 866 (1242)
-....+|.+.|||+...+=-|.-|.--+|... .....-.++|+|+|+..+.+.++.-.. ..| ....
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk----~ly-----~r~~ 221 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK----ILY-----TREV 221 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe----eee-----Eeec
Confidence 34456789999999887777888776666421 111223378999999999999997543 222 2346
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHH
Q psy5911 867 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946 (1242)
Q Consensus 867 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~f 946 (1242)
.+||+.+...+.+.+ +.+ ...++.+|....... +--
T Consensus 222 ~~g~~Qlt~~i~r~~--------~L~-----------~~~a~~~k~~~~~P~-------------------------~y~ 257 (354)
T COG4972 222 PVGTDQLTQEIQRAY--------SLT-----------EEKAEEIKRGGTLPT-------------------------DYG 257 (354)
T ss_pred cCcHHHHHHHHHHHh--------CCC-----------hhHhHHHHhCCCCCC-------------------------chh
Confidence 679999988876543 222 235666666543211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCCccCcceEEEecCcCchHHHHHHHHhhhccc
Q psy5911 947 ESLVEDLISKSLKPCEVALND--AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 1001 (1242)
Q Consensus 947 e~~~~~~~~~~~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~ 1001 (1242)
.++..|++..+.+.|.+.|+- +.-...+|++|+|.||++.+-.+.+.+.+.++.+
T Consensus 258 ~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 258 SEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 234555555555555555542 1223457999999999999999999999998754
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0055 Score=66.10 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=37.6
Q ss_pred eEEEecCccChHHHHHHHHHhcc-cc----cccCCCcchhhHhHHHHhh
Q psy5911 337 EIILVGGQTRMPLVQKMVSEFFE-KE----VKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 337 ~ViLvGG~s~ip~v~~~l~~~f~-~~----~~~~~~p~~ava~GAa~~a 380 (1242)
.|+|+||.++.+.+.+.|++.++ .+ +..+.+|..+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999884 22 4556788999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0028 Score=66.76 Aligned_cols=192 Identities=21% Similarity=0.242 Sum_probs=100.7
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+..|.++...=-|+.+|++....... .+.-+.++|+|||++|.|++.-. +.+....-+| .|+-++..+..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~-----g~v~~iHlAG----AG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRD-----GEVTAIHLAG----AGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TT-----S-EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCC-----CcEEEEEecC----CchhhHHHHHH
Confidence 45577777778899999998866544 34457888999999999999744 4555555555 56665555432
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCc-----------eeeEEecccccc---------CCCCeeeEE
Q psy5911 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-----------QTDINLPYITAD---------KNGPKHLNV 939 (1242)
Q Consensus 880 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~~~~~~---------~~~~~~~~~ 939 (1242)
. .+.+. +.-+|..|+---..- +..+.-..+... .++-..+..
T Consensus 176 E--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 E--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp H--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred h--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 2 22211 345677776311000 000000000000 011112222
Q ss_pred EEcHHHHHHHHHHHHHHH-HHHHHHHHHhcCC--CccCcceEEEecCcCchHHHHHHHHhhhc--------ccccccCCc
Q psy5911 940 KITRSKLESLVEDLISKS-LKPCEVALNDAKI--DKSKISEIILVGGQTRMPLVQKMVSEFFE--------KEVKKDINP 1008 (1242)
Q Consensus 940 ~itr~~fe~~~~~~~~~~-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~v~~~~~p 1008 (1242)
.++-+++..+=...-++. ..-..++|++... +..+|+.|+|||||+.=.-|-+++.+.+. -.+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 333444444333322222 2223445554332 23569999999999986666666666652 245667789
Q ss_pred chhhhhhHHHh
Q psy5911 1009 DEAVAVGASVQ 1019 (1242)
Q Consensus 1009 ~~aVa~GAa~~ 1019 (1242)
..|||.|.++.
T Consensus 318 RNAVATGLvls 328 (332)
T PF08841_consen 318 RNAVATGLVLS 328 (332)
T ss_dssp STHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999764
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=80.02 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=55.4
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHH--------HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEE
Q psy5911 777 EKAVITVPAYFNDSQRQATKDAGK--------IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI 848 (1242)
Q Consensus 777 ~~~VitVPa~~~~~qr~~~~~Aa~--------~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~ 848 (1242)
.-.+||.++..-.+-++.+..+.. .||++...++. |.|++.+...+ .++..++++|+||||+++++++-
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--Eke~gVa~IDIGgGTT~iaVf~~ 165 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--ERNTRVLNIDIGGGTANYALFDA 165 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--hccCceEEEEeCCCceEEEEEEC
Confidence 346788876654444444433221 26777666666 99888877643 45566788899999999999975
Q ss_pred eecCCCceEEEEEecCCCCCCchHHH
Q psy5911 849 ANVDGETQFEVLSTNGDTFLGGEDFD 874 (1242)
Q Consensus 849 ~~~~~~~~~~v~~~~~~~~lGG~~~D 874 (1242)
.. +.+.+...+||+.+.
T Consensus 166 G~---------l~~T~~l~vGG~~IT 182 (475)
T PRK10719 166 GK---------VIDTACLNVGGRLIE 182 (475)
T ss_pred CE---------EEEEEEEecccceEE
Confidence 43 222333556887654
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0053 Score=67.17 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=42.4
Q ss_pred ceEEEecCcCchHHHHHHHHhhhccccc-ccCCcchhhhhhHHHhhhh
Q psy5911 976 SEIILVGGQTRMPLVQKMVSEFFEKEVK-KDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 976 ~~ViLvGG~s~ip~v~~~l~~~f~~~v~-~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+.|+|+||.++.|.+++.+++.++.++. .+.+|..+.|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999998877 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0053 Score=74.82 Aligned_cols=215 Identities=17% Similarity=0.176 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCc---eeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEe-cCCCC-
Q psy5911 793 QATKDAGKIAGLE---VLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLST-NGDTF- 867 (1242)
Q Consensus 793 ~~~~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~-~~~~~- 867 (1242)
....++++..||. ++.-..+..|++++.+.... + .+++-+|.+.+-..+..-........+..... ..+..
T Consensus 211 ~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~~---g-~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (484)
T PRK15027 211 ALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDA---N-QAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWH 286 (484)
T ss_pred cccHHHHHHhCCCCCeEEecccHHHHHHhccCcccC---C-cEEEEecCceEEEEecCCcccCchhceeecceecCCceE
Confidence 3345777888864 44556688888888776432 2 24445666654333222100011111111111 11111
Q ss_pred -CCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccC----C----C-Ceee
Q psy5911 868 -LGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADK----N----G-PKHL 937 (1242)
Q Consensus 868 -lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~----~----~-~~~~ 937 (1242)
.|+....-..++|+.+.+.. .. ...+.+.+.++... ...-+-+|++.-.. + + ...+
T Consensus 287 ~~~~~~~~g~~~~W~~~~~~~-------~~---~~~~~~~a~~~~~g----~~gl~~~P~l~G~r~P~~~~~arg~f~gl 352 (484)
T PRK15027 287 LMSVMLSAASCLDWAAKLTGL-------SN---VPALIAAAQQADES----AEPVWFLPYLSGERTPHNNPQAKGVFFGL 352 (484)
T ss_pred EEEEehhhHHHHHHHHHHhCC-------cc---HHHHHHHHhhCCCC----CCceEEecccccCCCcCCCCCcceEEECC
Confidence 13333333456677666531 01 22333333332211 11123445442110 1 1 1123
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHH
Q psy5911 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa 1017 (1242)
+...+|.+|-..+-+-+.-....+-+.+++.+. .++.|+++||+++++.+.+++.+.+|.++....+.+++.++|||
T Consensus 353 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 353 THQHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHH
Confidence 344567777765554444444444455555443 47899999999999999999999999999777777778999999
Q ss_pred Hhhhhhccccc
Q psy5911 1018 VQAGVLSGVVK 1028 (1242)
Q Consensus 1018 ~~a~~l~~~~~ 1028 (1242)
+.|+.-.|..+
T Consensus 430 ~lA~~~~G~~~ 440 (484)
T PRK15027 430 RLAQIAANPEK 440 (484)
T ss_pred HHHHHhcCCcC
Confidence 99987766433
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.02 Score=66.82 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=60.5
Q ss_pred eeEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhccccc---------
Q psy5911 936 HLNVKITRSKLESLVEDL---ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK--------- 1003 (1242)
Q Consensus 936 ~~~~~itr~~fe~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~--------- 1003 (1242)
++.+.|.-.++++.+-.. +....+.+-+++.. .+.|-++|+|--||.|.|+..++.....++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344677777777755443 44444444444443 3467899999999999999999877643321
Q ss_pred -----------ccCCcchhhhhhHHHhhhhhcccccceE
Q psy5911 1004 -----------KDINPDEAVAVGASVQAGVLSGVVKDVL 1031 (1242)
Q Consensus 1004 -----------~~~~p~~aVa~GAa~~a~~l~~~~~~~~ 1031 (1242)
+--||...+|.||.+.+..+.-...++.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 2358999999999877655444444443
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.033 Score=67.95 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=49.8
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
.-+|.+|-..+-+-+.-.....-+.|.+.. ...++.|.++||+|+.+...+++.+.+|.++..+...+.+.+-||++.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~ 446 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALA 446 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHH
Confidence 346666554333222222233334444431 234678999999999999999999999999885555444445445444
Q ss_pred hhh
Q psy5911 380 AGV 382 (1242)
Q Consensus 380 a~~ 382 (1242)
+..
T Consensus 447 ~~~ 449 (502)
T COG1070 447 AAA 449 (502)
T ss_pred HHH
Confidence 433
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.019 Score=66.99 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=58.8
Q ss_pred eEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccc----------
Q psy5911 297 LNVKITRSKLESLVEDL---ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK---------- 363 (1242)
Q Consensus 297 ~~~~itr~~fe~l~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~---------- 363 (1242)
+-+.|.-.++++.+-.- +......+-+++.. .+.|.++|+|--||+|.+|..++.....++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34667777777655433 33334444444432 3467899999999999999999877643322
Q ss_pred ----------cCCCcchhhHhHHHHhhhhhcCCccce
Q psy5911 364 ----------KDINPDEAVAVGASVQAGVLSGVVKDV 390 (1242)
Q Consensus 364 ----------~~~~p~~ava~GAa~~a~~l~~~~~~~ 390 (1242)
+-.||...+|.||.+++..+.-...++
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF 854 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNF 854 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhhccCcce
Confidence 235899999999988876554444443
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0061 Score=67.41 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 946 LESLVEDLISKSLKPCEV-ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 946 fe~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.|+++..+...+..-+-. +++...+.. . |+|+||.+....+.+++.+.+|.++..+.+|...-|+|||++|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~~--~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIEE--P--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC--C--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 355555665555544444 555444322 2 999999999999999999999999999999999999999999854
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0068 Score=68.74 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred CeeeChHHHHHHHHHHHHHHHHhHhCCCCC-----cEEEEecCCCCHHHHHHHH-HHHHHcCCceeeeechhHHHHHHcc
Q psy5911 748 DQYCAPPQISAEILKKMKSTAETFLNEKIE-----KAVITVPAYFNDSQRQATK-DAGKIAGLEVLRIINEPTAAALAYG 821 (1242)
Q Consensus 748 ~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~~~-~Aa~~AGl~~~~li~Ep~AAal~y~ 821 (1242)
....+..++++.+-+-+.-...+.+..+.+ .+|+-||-.|....-+.+. -.....||....++-|+.||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345566666666544444444555554443 5899999999987755554 4567789999999999999999888
Q ss_pred CCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHH
Q psy5911 822 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883 (1242)
Q Consensus 822 ~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 883 (1242)
+. .-.|+|+|+-+|.++.++-.- ....+.--...||.|+++.|+-++..
T Consensus 274 ls------s~CVVdiGAQkTsIaCVEdGv-------s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 274 LS------SACVVDIGAQKTSIACVEDGV-------SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cc------ceeEEEccCcceeEEEeecCc-------cccCceEEeccCCchHHHHHHHHHHh
Confidence 75 247779999999999997322 11112222345999999999877654
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=71.47 Aligned_cols=87 Identities=23% Similarity=0.250 Sum_probs=63.1
Q ss_pred eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhH
Q psy5911 937 LNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 1016 (1242)
Q Consensus 937 ~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GA 1016 (1242)
++..-+|.+|-..+-+-+.-....+-+.+++.+. ..++.|.++||++++|.+.+++.+.||.++....++ ++.++||
T Consensus 358 l~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGa 434 (465)
T TIGR02628 358 LTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGA 434 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHH
Confidence 3445567776665555444444444455555431 247889999999999999999999999999766554 6889999
Q ss_pred HHhhhhhccc
Q psy5911 1017 SVQAGVLSGV 1026 (1242)
Q Consensus 1017 a~~a~~l~~~ 1026 (1242)
|+.|+.-.|.
T Consensus 435 A~~a~~a~G~ 444 (465)
T TIGR02628 435 AMFGFYGVGE 444 (465)
T ss_pred HHHHHHhcCc
Confidence 9999876653
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.004 Score=70.39 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEee
Q psy5911 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDL 836 (1242)
Q Consensus 758 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~ 836 (1242)
..+..|+...-.... .....+++|-|..+....|+.|.+.. +.-+.+-+.+ .-.|..++++.. +=+|+|+
T Consensus 82 e~iw~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~t------tG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGRT------TGLVVDS 152 (372)
T ss_pred HHHHHHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCCe------eEEEEEc
Confidence 666666662222211 22357999999999999999988764 3334443333 222323233332 3478899
Q ss_pred CCCce-EEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhcc
Q psy5911 837 GGGTF-DISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS 915 (1242)
Q Consensus 837 GggT~-dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 915 (1242)
|.|-+ -+.+++ .+.+...-....+||+|+...+...|.+ .+........ +.-++.+|+.++
T Consensus 153 G~gvt~~vPI~e--------G~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~-----~eIv~diKeklC 214 (372)
T KOG0676|consen 153 GDGVTHVVPIYE--------GYALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAE-----FEIVRDIKEKLC 214 (372)
T ss_pred CCCceeeeeccc--------ccccchhhheecccchhhHHHHHHHHHh-----cccccccccH-----HHHHHHhHhhhc
Confidence 99966 455553 2333444455678999999977777665 1211111110 112333444332
Q ss_pred CC------------ceeeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhcC--CCcc
Q psy5911 916 NA------------EQTDINLPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDAK--IDKS 973 (1242)
Q Consensus 916 ~~------------~~~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~--~~~~ 973 (1242)
.. ....+...+. ..|+.. +.+.-+.|. -+++|-+ ..+-+.+-..+.++. +.+.
T Consensus 215 yvald~~~e~~~~~~~~~l~~~y~--lPDg~~---i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~ 289 (372)
T KOG0676|consen 215 YVALDFEEEEETANTSSSLESSYE--LPDGQK---ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKD 289 (372)
T ss_pred ccccccchhhhccccccccccccc--CCCCCE---EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHH
Confidence 11 0111111111 112211 344433332 1233222 122233333333332 2233
Q ss_pred CcceEEEecCcCchHHHHHHHHhhhcc--------cccccCCcchhhhhhHHHhhh
Q psy5911 974 KISEIILVGGQTRMPLVQKMVSEFFEK--------EVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 974 ~i~~ViLvGG~s~ip~v~~~l~~~f~~--------~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
-...|+|+||++..|.+.+++.+.... ++..+.+...++=.|+++.|.
T Consensus 290 L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 290 LYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 367899999999999999988776621 233343444556677777664
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.005 Score=70.05 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=43.4
Q ss_pred ceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhh
Q psy5911 976 SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 976 ~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
+.|+++||.++.+.+.+.+++.++.++..+.+|..+.|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3499999999999999999999999999999999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=61.03 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=131.1
Q ss_pred CCcEEEEecCCCCHHHHHHHHHH-HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCC
Q psy5911 136 IEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 214 (1242)
Q Consensus 136 ~~~~vitVPa~f~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~ 214 (1242)
-.++.+|-|.--....|+.|.+. .+.-||.-+.+.-...-+.++-++... +|+|-|.|-+-+.-+.-+
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------vVvDSGDGVTHi~PVye~----- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------VVVDSGDGVTHIVPVYEG----- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------EEEecCCCeeEEeeeecc-----
Confidence 44789999999888889988776 467788777665544444444443222 677999998877654311
Q ss_pred ceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc-----------eeeee
Q psy5911 215 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE-----------QTDIN 283 (1242)
Q Consensus 215 ~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~ 283 (1242)
+..-.-.+-..+.|+|+++-|.++|..+ .+..+-+.+ .+..+..|+.|+.-. ++.+-
T Consensus 170 --~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvL 237 (389)
T KOG0677|consen 170 --FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVL 237 (389)
T ss_pred --eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheee
Confidence 1111122234569999999999888654 122211122 234455566554210 11111
Q ss_pred ccccccCCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcCC--cceEEEecCccChHHHHHH
Q psy5911 284 LPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDAKIDKSK--ISEIILVGGQTRMPLVQKM 353 (1242)
Q Consensus 284 i~~~~~~~~~~~~~~~~itr~~fe---~l~~~~~-----~~i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~ip~v~~~ 353 (1242)
++...-. ..-.+.+--+.|| .+++|.+ ..+.+++-.+++.+.++... -.+|+|.|||+.-|.+-..
T Consensus 238 v~~YtLP----DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSR 313 (389)
T KOG0677|consen 238 VESYTLP----DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSR 313 (389)
T ss_pred eeeeecC----CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHH
Confidence 1111110 1123566666665 3666644 24566777777777654322 4689999999999988877
Q ss_pred HHHhc----------cc-------c--cccCCCcchhhHhHHHHhhhhhcC
Q psy5911 354 VSEFF----------EK-------E--VKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 354 l~~~f----------~~-------~--~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
|++.+ |. + +-.++.-..-|-.|.|..|.++..
T Consensus 314 LEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 314 LEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 76543 11 1 122333456788888888877664
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.035 Score=68.01 Aligned_cols=203 Identities=17% Similarity=0.158 Sum_probs=105.2
Q ss_pred cCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEE-EEeecCCCceEEEEEec-CC----CCCCchHHHH
Q psy5911 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVI-EIANVDGETQFEVLSTN-GD----TFLGGEDFDM 875 (1242)
Q Consensus 802 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~-~~~~~~~~~~~~v~~~~-~~----~~lGG~~~D~ 875 (1242)
+|.+++.-..+-.|++++.+.... +..+++ +|.+++-.... .-...+..+.+...... .+ ...|+...--
T Consensus 236 ~g~pV~~g~~D~~aa~~G~G~~~~--g~~~~~--~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g 311 (498)
T PRK00047 236 GEVPIAGIAGDQQAALFGQLCFEP--GMAKNT--YGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAG 311 (498)
T ss_pred CCceEEEEccHHHHHHHhCcCCCC--CceEEe--eccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHH
Confidence 577787777888888888876432 222222 45443322221 00011111111111111 11 1234555555
Q ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEecccccc----CCC-----CeeeEEEEcHHHH
Q psy5911 876 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITAD----KNG-----PKHLNVKITRSKL 946 (1242)
Q Consensus 876 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~-----~~~~~~~itr~~f 946 (1242)
..++|+.+.|... ... ..+...++.. ... ..-+.+|++.-. .+. ...++..-+|.++
T Consensus 312 ~~l~W~~~~~~~~------~~~---~~~~~~a~~~----~~~-~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l 377 (498)
T PRK00047 312 SAIQWLRDGLKII------SDA---SDSEALARKV----EDN-DGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI 377 (498)
T ss_pred HHHHHHHHHhcCC------CCH---HHHHHHHhcC----CCC-CCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH
Confidence 6778888877411 111 1121222221 111 123556665411 010 1112333456655
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 947 ESLVEDLISKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 947 e~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
-..+-+-+.--...+-+.+++ .+. .++.|.++||.+++|.+.+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 378 ~rAvlEgia~~~r~~~e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 378 IRATLESIAYQTRDVLDAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 543333222222222234442 243 478899999999999999999999999997544 456889999999987666
Q ss_pred c
Q psy5911 1026 V 1026 (1242)
Q Consensus 1026 ~ 1026 (1242)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 4
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=67.25 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=85.4
Q ss_pred eecChHHHHHHHHHHHHHHHHhHhcCCCC-----cEEEEecCCCCHHHHHHH-HHHHHHcCCCeeeeechHHHHHHHhcc
Q psy5911 109 KKLAPPQISAEILKKMKSTAETFLNEKIE-----KAVITVPAYFNDSQRQAT-KDAGKIAGLEVLRIINEPTAAALAYGL 182 (1242)
Q Consensus 109 ~~~~~~~v~a~~L~~l~~~a~~~~~~~~~-----~~vitVPa~f~~~qr~~~-~~Aa~~AGl~~~~li~Ep~AAal~y~~ 182 (1242)
...+..++++++-+-+.-.....+..+.+ ++|+-||-.|.....+.+ .-.....||....++-|+.||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34566666666554444444555554433 589999999997775554 445678899999999999999988877
Q ss_pred CCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy5911 183 DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243 (1242)
Q Consensus 183 ~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~ 243 (1242)
.. -+|+|+|+-++.++.++-+-.-+...+. ...||.||++.|+-++..
T Consensus 275 ss------~CVVdiGAQkTsIaCVEdGvs~~ntri~-------L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVEDGVSLPNTRII-------LPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cc------eeEEEccCcceeEEEeecCccccCceEE-------eccCCchHHHHHHHHHHh
Confidence 42 3777999999999988743211212222 245999999999877654
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.032 Score=67.78 Aligned_cols=210 Identities=19% Similarity=0.148 Sum_probs=110.6
Q ss_pred HHHHHHHcCC----ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCC------ceEEEEEe-c
Q psy5911 795 TKDAGKIAGL----EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE------TQFEVLST-N 863 (1242)
Q Consensus 795 ~~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~------~~~~v~~~-~ 863 (1242)
..+++...|| +++.-..+..||+++.+.. .+. +++-+|.+.+ -.+........ +....... .
T Consensus 219 ~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~---~g~--~~~~~GT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
T PRK10331 219 QPSAAALLGLPVGIPVISAGHDTQFALFGSGAG---QNQ--PVLSSGTWEI--LMVRSAQVDTSLLSQYAGSTCELDSQS 291 (470)
T ss_pred CHHHHHHhCCCCCCeEEEccccHHHHHhCCCCC---CCC--EEEecchhhh--heeecCCCcccccccccccceeccccC
Confidence 3466666666 4666678888888888752 233 2324554433 22211110000 10101111 1
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCC-CeeeEEEEc
Q psy5911 864 GDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG-PKHLNVKIT 942 (1242)
Q Consensus 864 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~-~~~~~~~it 942 (1242)
+.-..|+..+....++|+.+.|.. ....+..|.+.++++... ....+-+|.+.....+ ...++..-+
T Consensus 292 ~~~~~~~~~~~g~~~~W~~~~~~~--------~~~~y~~l~~~a~~~~~g----~~gl~~~p~~~g~~rg~~~Gl~~~~~ 359 (470)
T PRK10331 292 GLYNPGMQWLASGVLEWVRKLFWT--------AETPYQTMIEEARAIPPG----ADGVKMQCDLLACQNAGWQGVTLNTT 359 (470)
T ss_pred ceeeechhhHHHHHHHHHHHHhcc--------cCchHHHHHHHHhcCCCC----CCceEecccccccCceeEECCCCCcC
Confidence 111123333444467888877641 012234444444433211 1112234444321111 122334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 943 RSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 943 r~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
|.++-..+-+-+.-....+-+.+++.+ ...++.|.++||++++|.+.+++.+.+|.++.... ..++.++|||+.|+.
T Consensus 360 ~~~l~rAvlEgia~~~~~~~~~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~ 436 (470)
T PRK10331 360 RGHFYRAALEGLTAQLKRNLQVLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWY 436 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHH
Confidence 777665444433333333333444432 12478999999999999999999999999997555 456889999999987
Q ss_pred hccc
Q psy5911 1023 LSGV 1026 (1242)
Q Consensus 1023 l~~~ 1026 (1242)
-.|.
T Consensus 437 ~~G~ 440 (470)
T PRK10331 437 GVGE 440 (470)
T ss_pred hcCC
Confidence 6653
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.025 Score=63.70 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc-----ccccccCCcchhhhhhHHHhh
Q psy5911 950 VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-----KEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 950 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-----~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
+..+...+..-+...+.+.+ .--+.|+|+||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 360 aAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 360 LAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 33444444444444444331 112469999999999999999999994 568889999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=65.61 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred ceEEEecCccChHHHHHHHHHhcc-----cccccCCCcchhhHhHHHHhh
Q psy5911 336 SEIILVGGQTRMPLVQKMVSEFFE-----KEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 336 ~~ViLvGG~s~ip~v~~~l~~~f~-----~~~~~~~~p~~ava~GAa~~a 380 (1242)
..|+|+||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999993 667889999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.055 Score=66.16 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=45.5
Q ss_pred CcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhccc
Q psy5911 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 1026 (1242)
Q Consensus 974 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~ 1026 (1242)
.++.|.++||.++++.+.+++.+.||.++.... ..++.++|||+.|+...+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 478999999999999999999999999987554 6678899999999876653
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.05 Score=66.32 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=59.1
Q ss_pred EEcHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 300 KITRSKLESL-VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 300 ~itr~~fe~l-~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
.-+|.+|-.. ++.+.-.+...+ +.+++.+. .++.|+++||+++++.+.+++.+.+|.++....+.+++.|+|||+
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~ 430 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAAR 430 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHH
Confidence 3356665442 233333333333 33444442 478999999999999999999999999997777777789999999
Q ss_pred hhhhhcCC
Q psy5911 379 QAGVLSGV 386 (1242)
Q Consensus 379 ~a~~l~~~ 386 (1242)
.|+.-.|.
T Consensus 431 lA~~~~G~ 438 (484)
T PRK15027 431 LAQIAANP 438 (484)
T ss_pred HHHHhcCC
Confidence 99876654
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0048 Score=65.43 Aligned_cols=48 Identities=29% Similarity=0.471 Sum_probs=43.5
Q ss_pred CcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 974 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.++.|+++||.++.|.+.+++.+.|+.++..... .++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4899999999999999999999999998876555 89999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.016 Score=62.52 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=37.8
Q ss_pred eEEEecCcCchHHHHHHHHhhhc-cc----ccccCCcchhhhhhHHHhh
Q psy5911 977 EIILVGGQTRMPLVQKMVSEFFE-KE----VKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 977 ~ViLvGG~s~ip~v~~~l~~~f~-~~----v~~~~~p~~aVa~GAa~~a 1020 (1242)
.|+|+||.++.+.+.+.+++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999884 22 5556789999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=60.32 Aligned_cols=223 Identities=19% Similarity=0.215 Sum_probs=131.5
Q ss_pred CCcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCC
Q psy5911 776 IEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 854 (1242)
Q Consensus 776 ~~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~ 854 (1242)
-.++.+|-|.--....|+.|-+. .+.-||.-+.+.-...-+.++-|+... +|+|-|-|-+-+.-+.-.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------vVvDSGDGVTHi~PVye~----- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------VVVDSGDGVTHIVPVYEG----- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------EEEecCCCeeEEeeeecc-----
Confidence 44789999999999999998775 577899877766555544444444322 677999998877654311
Q ss_pred ceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC-----------ceeeEE
Q psy5911 855 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA-----------EQTDIN 923 (1242)
Q Consensus 855 ~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~ 923 (1242)
+..-.-.+-..+.|+|+++-|++++..+= +..+-..+ .+..+..|+.|..- .++++-
T Consensus 170 --~~l~HLtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvL 237 (389)
T KOG0677|consen 170 --FVLPHLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVL 237 (389)
T ss_pred --eehhhhhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheee
Confidence 11112223345699999999999887541 11111111 22334445544311 111111
Q ss_pred eccccccCCCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCCCcc--CcceEEEecCcCchHHHHHH
Q psy5911 924 LPYITADKNGPKHLNVKITRSKLE---SLVEDLI-----SKSLKPCEVALNDAKIDKS--KISEIILVGGQTRMPLVQKM 993 (1242)
Q Consensus 924 i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~ip~v~~~ 993 (1242)
++.... +..-.+.+-.+.|| .+++|.+ ..+.+++-.+++.+.++.. --.+|+|.|||+.-|.+-++
T Consensus 238 v~~YtL----PDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSR 313 (389)
T KOG0677|consen 238 VESYTL----PDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSR 313 (389)
T ss_pred eeeeec----CCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHH
Confidence 111110 01123555556665 3556543 2355666777777665432 25689999999999988777
Q ss_pred HHhhhc-------------------ccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 994 VSEFFE-------------------KEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 994 l~~~f~-------------------~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
|++.+. ..+-.++.-...|-.|.|.+|.++..
T Consensus 314 LEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 314 LEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 764431 11233445567788999998887764
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.083 Score=64.83 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred EEcHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 940 KITRSKLESLVE-DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 940 ~itr~~fe~~~~-~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
.-+|.+|-..+- .+.-.+...+....+..+. .++.|.++||.++++.+.+++.+.||.++....++ ++.++|||+
T Consensus 369 ~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~ 444 (505)
T TIGR01314 369 SHKKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACI 444 (505)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHH
Confidence 335565554332 2222333333333332332 58899999999999999999999999999766555 688999999
Q ss_pred hhhhhccc
Q psy5911 1019 QAGVLSGV 1026 (1242)
Q Consensus 1019 ~a~~l~~~ 1026 (1242)
.|+.-.|.
T Consensus 445 la~~~~G~ 452 (505)
T TIGR01314 445 LGLKALGL 452 (505)
T ss_pred HHHHhcCc
Confidence 99876653
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.026 Score=65.62 Aligned_cols=224 Identities=20% Similarity=0.227 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCce----eeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCC---ceEEEEEecCC
Q psy5911 793 QATKDAGKIAGLEV----LRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE---TQFEVLSTNGD 865 (1242)
Q Consensus 793 ~~~~~Aa~~AGl~~----~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~---~~~~v~~~~~~ 865 (1242)
..+.++|+..||.. ..-+-+.-|.+++.+... ++ -|++=+|.+||++.+-+-....+. .....+-.+.-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---~~-~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---PG-SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC---CC-eEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 45677888888843 222334444444443222 22 244457888888877653311100 11222222222
Q ss_pred CCCCchHHHHHHHHHHHHHhhh---------hcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccC----C
Q psy5911 866 TFLGGEDFDMRIINHLIYEFKI---------ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADK----N 932 (1242)
Q Consensus 866 ~~lGG~~~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~----~ 932 (1242)
..=||..-.-.+++|+.+...- +++.++ ......++..-+++.+...+.... -+-++.+.-+. |
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aD 384 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLAD 384 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCC
Confidence 3347888888888888765310 111000 112333444444555544432211 12222111100 0
Q ss_pred ----C-CeeeEEEEcHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccc
Q psy5911 933 ----G-PKHLNVKITRSKLESLVEDLISKSL---KPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 1004 (1242)
Q Consensus 933 ----~-~~~~~~~itr~~fe~~~~~~~~~~~---~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~ 1004 (1242)
| ..++++.-+.+.+-.+..-.+.-+. ..|-+++++.++ .|+.|+.+||-.+.|.+.+.+.+..|.++..
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~v~i 461 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRPVVI 461 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCeEEe
Confidence 0 1123344455544455555555443 344555556554 6899999999999999999999999998876
Q ss_pred cCCcchhhhhhHHHhhhhhcccc
Q psy5911 1005 DINPDEAVAVGASVQAGVLSGVV 1027 (1242)
Q Consensus 1005 ~~~p~~aVa~GAa~~a~~l~~~~ 1027 (1242)
+ ..+++++.|+|+.|+.-.+..
T Consensus 462 ~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 462 P-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred e-cccchhhhHHHHHHHHHhccC
Confidence 6 678899999999999877643
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0078 Score=63.77 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-cCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 308 SLVEDLISKSLKPCEVALNDAKID-KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 308 ~l~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+++.-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 344444444444444444333111 234889999999999999999999999998876655 89999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.25 Score=60.60 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=105.9
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEE-EeecCCCceEEEEEecC--C-----CCCCchH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE-IANVDGETQFEVLSTNG--D-----TFLGGED 872 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~-~~~~~~~~~~~v~~~~~--~-----~~lGG~~ 872 (1242)
..|.+++.-..+..||+++.+.... +. ++.-+|.+++-+..+. .......+.+....... + ...|+..
T Consensus 236 ~~g~pV~~g~~D~~aa~~G~g~~~~--g~--~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (504)
T PTZ00294 236 LEGVPITGCIGDQQAALIGHGCFEK--GD--AKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIA 311 (504)
T ss_pred CCCCcEEEEecHHHHHHHhCcCCCC--Cc--eEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhh
Confidence 4577888888899999998876422 22 2223454433111111 00111112222222111 0 1123433
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccc----cCC----C-CeeeEEEEcH
Q psy5911 873 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA----DKN----G-PKHLNVKITR 943 (1242)
Q Consensus 873 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~----~-~~~~~~~itr 943 (1242)
.--..++|+++.|.. ..+ ...+.+.+++.+ .. ..-+.+|++.. ..+ + ...++..-++
T Consensus 312 ~~g~~~~W~~~~~~~------~~~---~~~~~~~a~~~~---g~--~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~ 377 (504)
T PTZ00294 312 VAGAGVEWLRDNMGL------ISH---PSEIEKLARSVK---DT--GGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTR 377 (504)
T ss_pred hhHHHHHHHHHHhCC------CCC---HHHHHHHHHhCC---CC--CCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCH
Confidence 344556788776631 011 112333333332 11 12244555431 111 0 1122233456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 944 SKLESLVEDLISKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 944 ~~fe~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.++-..+-+-+.-....+-+.+++ .+. .++.|.++||.++++.+.+++.+.||.++.... ..++.++|||+.|+.
T Consensus 378 ~~i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~ 453 (504)
T PTZ00294 378 AHIVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGL 453 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHh
Confidence 665543333222222222233333 243 378899999999999999999999999987555 555889999999987
Q ss_pred hcccc
Q psy5911 1023 LSGVV 1027 (1242)
Q Consensus 1023 l~~~~ 1027 (1242)
-.|..
T Consensus 454 a~G~~ 458 (504)
T PTZ00294 454 AVGVW 458 (504)
T ss_pred hcCcc
Confidence 76643
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.27 Score=53.09 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCCHHHHHHH-HHHHHHcCCCeeeeechHHHHHHHhc---cCCC----CCCcEEEEEEeCCcceeeeEEE
Q psy5911 136 IEKAVITVPAYFNDSQRQAT-KDAGKIAGLEVLRIINEPTAAALAYG---LDKK----PDDRIIVVYDLGGGTFDISVIE 207 (1242)
Q Consensus 136 ~~~~vitVPa~f~~~qr~~~-~~Aa~~AGl~~~~li~Ep~AAal~y~---~~~~----~~~~~vlV~D~GggT~Dvsv~~ 207 (1242)
-.++++|=|.+--++-.+.+ .-..+.-+++.+ ..-+.|+..++. .+.. ..+...+|+|-|-+-+-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 45789999976554444444 334556666543 333333333332 2221 1355899999999876665443
Q ss_pred EEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy5911 208 IANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243 (1242)
Q Consensus 208 ~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~ 243 (1242)
-.........+ ..+||..++..|.+.+.-
T Consensus 171 ~g~~~~qaV~R-------iDvGGK~LTn~LKE~iSy 199 (400)
T KOG0680|consen 171 KGIPYYQAVKR-------IDVGGKALTNLLKETISY 199 (400)
T ss_pred cCcchhhceEE-------eecchHHHHHHHHHHhhh
Confidence 22211112222 246999999999887753
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.25 Score=60.50 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC
Q psy5911 309 LVEDLISKSLKPCEVALNDAK-IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386 (1242)
Q Consensus 309 l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~ 386 (1242)
++.-+++.+.-.++..++... .....++.|.++||.+++|.+.+++.+.||.++..... .++.|+|||+.|+.-.|.
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVV-AETTALGAAYLAGLAVGF 454 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCc-ccchHHHHHHHHhhhcCc
Confidence 344444444444443333221 11124789999999999999999999999999875554 468899999999876553
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.018 Score=71.05 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=63.5
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHH
Q psy5911 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa 1017 (1242)
+..-+|..+..++.-+++.+.-.++.+++...-....++.|.++||.++++.+.+++.+.+|.++....++ ++.++|||
T Consensus 407 ~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA 485 (541)
T TIGR01315 407 SMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAA 485 (541)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHH
Confidence 34446766666666666666555444444332111247899999999999999999999999999766554 57899999
Q ss_pred Hhhhhhccc
Q psy5911 1018 VQAGVLSGV 1026 (1242)
Q Consensus 1018 ~~a~~l~~~ 1026 (1242)
+.|+.-.|.
T Consensus 486 ~lA~~~~G~ 494 (541)
T TIGR01315 486 MLGAKAAGT 494 (541)
T ss_pred HHHHHhcCc
Confidence 999876653
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.086 Score=61.11 Aligned_cols=85 Identities=25% Similarity=0.310 Sum_probs=53.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCeeeee---chHHHHHHHhccCC--CCCCcEEEEEEeCCcceeeeEEEEEeecC
Q psy5911 139 AVITVPAYFNDSQRQATKDAGKIAGLEVLRII---NEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIEIANVDG 213 (1242)
Q Consensus 139 ~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li---~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~Dvsv~~~~~~~~ 213 (1242)
+.||==+--.++.|..+..-+..||==++.-- -|+.-|+-..|... ......|+=+|+||||+.+++++-.+
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~--- 164 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE--- 164 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE---
Confidence 56676666677888888888888873222211 35554544333221 13567788899999999999997654
Q ss_pred CceEEEEEecCCCCcchHH
Q psy5911 214 ETQFEVLSTNGDTFLGGED 232 (1242)
Q Consensus 214 ~~~~~v~~~~~~~~lGG~~ 232 (1242)
++.+.. .++||+-
T Consensus 165 -----v~~T~c-l~IGGRL 177 (473)
T PF06277_consen 165 -----VIDTAC-LDIGGRL 177 (473)
T ss_pred -----EEEEEE-EeeccEE
Confidence 333332 4468864
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.19 Score=61.50 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=55.5
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 939 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
..-+|.+|-..+-+-+.-.....-+.|.+.. ...++.|.++||+|+++.+.+++.+.+|.++..+...+.+.+-||++
T Consensus 368 ~~~~~~~l~ravlEgva~~l~~~~~~l~~~~--g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~ 445 (502)
T COG1070 368 LPHTRAHLARAVLEGVAFALADGLEALEELG--GKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAAL 445 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHH
Confidence 4457777776655555555555555666552 13467899999999999999999999999998555544444444444
Q ss_pred hhh
Q psy5911 1019 QAG 1021 (1242)
Q Consensus 1019 ~a~ 1021 (1242)
.+.
T Consensus 446 ~~~ 448 (502)
T COG1070 446 AAA 448 (502)
T ss_pred HHH
Confidence 443
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=95.45 E-value=5.1 Score=44.64 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc-----ccccccCCCcchhhHhHHHHhh
Q psy5911 308 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-----EKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 308 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-----~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+++....+.+...+...+......... |+|+||..+.+.+.+.+.+.+ ..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 455555566666666666655543222 999999999987777775555 2345567789999999999976
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.037 Score=68.22 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=54.7
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 941 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
.+|.++- +-+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+++.+.||.++.....+ ++.|+|||+.|
T Consensus 416 ~~~~~~~---RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A 490 (556)
T PLN02669 416 FDPPSEV---RAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRA 490 (556)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHH
Confidence 3565543 334444433333333333322 358899999999999999999999999988766555 68899999999
Q ss_pred hh
Q psy5911 1021 GV 1022 (1242)
Q Consensus 1021 ~~ 1022 (1242)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 75
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.057 Score=66.67 Aligned_cols=84 Identities=17% Similarity=0.294 Sum_probs=62.8
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCc-CchHHHHHHHHhhhcccccccCCcchhhhhhHH
Q psy5911 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ-TRMPLVQKMVSEFFEKEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 939 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa 1017 (1242)
..-+|.+|-..+-+-+.-....+-+.|++.+. .++.|+++||. ++++.+.+++.+.||.++....++ ++.|.|||
T Consensus 403 ~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA 478 (536)
T TIGR01234 403 LATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAA 478 (536)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHH
Confidence 44567776665554444444444555555443 58899999999 999999999999999999766654 68899999
Q ss_pred Hhhhhhccc
Q psy5911 1018 VQAGVLSGV 1026 (1242)
Q Consensus 1018 ~~a~~l~~~ 1026 (1242)
+.|+.-.|.
T Consensus 479 ~lA~~~~G~ 487 (536)
T TIGR01234 479 IFAAVAAGV 487 (536)
T ss_pred HHHHHHcCC
Confidence 999876653
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.047 Score=67.41 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=64.7
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
.-+|..+..++.-+++.+.-.++.+++...-....++.|.++||.++++.+.+++.+.+|.++....++ ++.++|||+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHH
Confidence 335666777777777777666665555432112347899999999999999999999999999876655 5789999999
Q ss_pred hhhhcC
Q psy5911 380 AGVLSG 385 (1242)
Q Consensus 380 a~~l~~ 385 (1242)
|+.-.|
T Consensus 488 A~~~~G 493 (541)
T TIGR01315 488 GAKAAG 493 (541)
T ss_pred HHHhcC
Confidence 987555
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.072 Score=65.38 Aligned_cols=87 Identities=17% Similarity=0.220 Sum_probs=58.5
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhh
Q psy5911 939 VKITRSKLESLVEDLISKSLKPCEVALNDA-KI--DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015 (1242)
Q Consensus 939 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~G 1015 (1242)
..-+|.++-..+-+-+.--...+-+.+++. +. ....++.|.++||++++|.+.+++.+.||.++... +..++.|+|
T Consensus 374 ~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alG 452 (512)
T PLN02295 374 RFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALG 452 (512)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHH
Confidence 334566665544333332233333344433 21 12347889999999999999999999999999644 445788999
Q ss_pred HHHhhhhhccc
Q psy5911 1016 ASVQAGVLSGV 1026 (1242)
Q Consensus 1016 Aa~~a~~l~~~ 1026 (1242)
||+.|+.-.|.
T Consensus 453 aA~~A~~~~G~ 463 (512)
T PLN02295 453 AAYAAGLAVGL 463 (512)
T ss_pred HHHHHHhhcCc
Confidence 99999876653
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.071 Score=64.45 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=62.4
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhH
Q psy5911 938 NVKITRSKLESLVEDLISKSLKPCEVALNDA-KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 1016 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GA 1016 (1242)
+..-+|.++-..+-+-+.-....+-+.+++. +. .++.|.++||+++++.+.+++.+.+|.++... . .++.|+||
T Consensus 353 ~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~Ga 427 (454)
T TIGR02627 353 PIPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGN 427 (454)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHH
Confidence 3445777776655544444444445555543 32 47899999999999999999999999999643 3 67899999
Q ss_pred HHhhhhhccccc
Q psy5911 1017 SVQAGVLSGVVK 1028 (1242)
Q Consensus 1017 a~~a~~l~~~~~ 1028 (1242)
|+.|+.-.|..+
T Consensus 428 A~~a~~~~G~~~ 439 (454)
T TIGR02627 428 IGVQLMALDEIN 439 (454)
T ss_pred HHHHHHhcCCcC
Confidence 999987666433
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.067 Score=65.93 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
+|.+ ++.-+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+++.+.||.++.....+ ++.|+|||+.|+
T Consensus 417 ~~~~---~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~ 491 (556)
T PLN02669 417 DPPS---EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAA 491 (556)
T ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHH
Confidence 4544 34455555544444454444332 357899999999999999999999999988766665 688999999997
Q ss_pred h
Q psy5911 382 V 382 (1242)
Q Consensus 382 ~ 382 (1242)
.
T Consensus 492 ~ 492 (556)
T PLN02669 492 H 492 (556)
T ss_pred H
Confidence 5
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.05 Score=66.55 Aligned_cols=84 Identities=19% Similarity=0.284 Sum_probs=58.9
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHH
Q psy5911 939 VKITRSKLESLVEDLISKSLKPCEVALNDA-KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 939 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa 1017 (1242)
..-+|.++-..+-+-+.--...+-+.+++. +. .++.|.++||.++++.+.+++.+.||.++.. .+..++.|+|||
T Consensus 366 ~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA 441 (493)
T TIGR01311 366 RGTTKAHIARAALEAIAFQTRDVLEAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAA 441 (493)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHH
Confidence 444566666544433333333333444432 32 4789999999999999999999999999975 444578899999
Q ss_pred Hhhhhhccc
Q psy5911 1018 VQAGVLSGV 1026 (1242)
Q Consensus 1018 ~~a~~l~~~ 1026 (1242)
+.|+.-.|.
T Consensus 442 ~~a~~~~G~ 450 (493)
T TIGR01311 442 YAAGLAVGY 450 (493)
T ss_pred HHHHhhcCc
Confidence 999876653
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.054 Score=67.18 Aligned_cols=82 Identities=16% Similarity=0.328 Sum_probs=58.1
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCc-CchHHHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 940 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ-TRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 940 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
.-+|.++-..+-+-+.--...+-+.|++.+. .++.|.++||+ ++++.+.+++.+.||.++.... +.|+.|+|||+
T Consensus 407 ~~~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~ 482 (548)
T PRK04123 407 GTDAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAI 482 (548)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHH
Confidence 4466665544333333333334444444443 47889999999 9999999999999999986444 56788999999
Q ss_pred hhhhhcc
Q psy5911 1019 QAGVLSG 1025 (1242)
Q Consensus 1019 ~a~~l~~ 1025 (1242)
.|+.-.|
T Consensus 483 lA~~~~G 489 (548)
T PRK04123 483 FAAVAAG 489 (548)
T ss_pred HHHHHhc
Confidence 9987655
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.27 Score=57.61 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 302 TRSKLESLVEDLISKSLKP---CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~---i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
+.+.+-.+..-.++-+.-- |-+++++.+ -.|+.|+.+||-.+.|.+.+.+.+..|.++..+ ..+++++.|+|+
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm 474 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAM 474 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHH
Confidence 4444445555555544433 333444444 458999999999999999999999999988766 667899999999
Q ss_pred hhhhhcCC
Q psy5911 379 QAGVLSGV 386 (1242)
Q Consensus 379 ~a~~l~~~ 386 (1242)
.|+.-.+.
T Consensus 475 ~~avAag~ 482 (544)
T COG1069 475 FAAVAAGV 482 (544)
T ss_pred HHHHHhcc
Confidence 99876654
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.098 Score=64.40 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
+|.++-..+-+-+.-....+-+.+++ .+. .++.|.++||+++++.+.+++.+.+|.++....++ ++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHH
Confidence 56666554444433333344444444 243 47899999999999999999999999999866654 57899999999
Q ss_pred hhhccc
Q psy5911 1021 GVLSGV 1026 (1242)
Q Consensus 1021 ~~l~~~ 1026 (1242)
+.-.|.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 876653
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.11 Score=62.83 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALNDA-KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
+|.+|-..+-+-+.-....+-+.|++. +. .++.|.++||+++++.+.+++.+.+|.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 666666555444444444444455543 32 478899999999999999999999999996543 379999999999
Q ss_pred hhhccc
Q psy5911 1021 GVLSGV 1026 (1242)
Q Consensus 1021 ~~l~~~ 1026 (1242)
+.-.|.
T Consensus 420 ~~a~G~ 425 (471)
T PRK10640 420 LMTLDE 425 (471)
T ss_pred HHHcCC
Confidence 876664
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.097 Score=63.46 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=56.8
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHH
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEV---ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 376 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GA 376 (1242)
.-+|.+| +.-+++.+.-.++. .+++.+ ...++.|.++||.+++|.+.+++.+.||.++....++ ++.++||
T Consensus 361 ~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGa 434 (465)
T TIGR02628 361 NTTRGHI---YRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGA 434 (465)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHH
Confidence 3345554 44445544443333 333332 1247889999999999999999999999999766665 6789999
Q ss_pred HHhhhhhcC
Q psy5911 377 SVQAGVLSG 385 (1242)
Q Consensus 377 a~~a~~l~~ 385 (1242)
|+.|+.-.|
T Consensus 435 A~~a~~a~G 443 (465)
T TIGR02628 435 AMFGFYGVG 443 (465)
T ss_pred HHHHHHhcC
Confidence 999987655
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.11 Score=63.66 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=44.9
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~ 386 (1242)
.++.|.++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.|.
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 378899999999999999999999999987665 4557899999999876653
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.11 Score=63.68 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=44.3
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|.++||.++++.+.+++.+.||.++..... .++.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 4789999999999999999999999999976444 57889999999987655
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.18 Score=48.27 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=27.2
Q ss_pred EEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcc--hHHHH--HHHHHHHH
Q psy5911 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG--GEDFD--MRIINHLI 242 (1242)
Q Consensus 191 vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lG--G~~iD--~~l~~~l~ 242 (1242)
|+++|+|++++.+++++.... +.++++.......-| |..|. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~---~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD---GYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE---EEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCC---CcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 578899999999999987331 445554322111111 66666 55555443
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.13 Score=62.93 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=44.9
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|+++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcC
Confidence 478999999999999999999999999987655 666889999999987665
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=63.38 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=45.0
Q ss_pred CcceEEEecCc-cChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQ-TRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~-s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|+++||. ++++.+.+++.+.||.++....++ ++.|+|||+.|+.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 58899999999 999999999999999999776664 6889999999987655
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.13 Score=63.78 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCc-cChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ-TRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+|.++ +.-+++.+.-.++.+++...-....++.|.++||. ++++.+.+++.+.||.++.... +.|+.|+|||+.|
T Consensus 409 ~~~~l---~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA 484 (548)
T PRK04123 409 DAPDI---YRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFA 484 (548)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHH
Confidence 45544 44444444433333333221112247899999999 9999999999999999986554 4578899999999
Q ss_pred hhhcC
Q psy5911 381 GVLSG 385 (1242)
Q Consensus 381 ~~l~~ 385 (1242)
+.-.|
T Consensus 485 ~~~~G 489 (548)
T PRK04123 485 AVAAG 489 (548)
T ss_pred HHHhc
Confidence 87554
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=62.23 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=56.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEVALNDAK-IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
.-+|.++ +.-+++.+.-.++..++... .....++.|.++||.+++|.+.+++.+.||.++..... .++.++|||+
T Consensus 357 ~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~ 432 (470)
T PRK10331 357 NTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAM 432 (470)
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHH
Confidence 3456554 34444444433333333221 11224789999999999999999999999999976654 4688999999
Q ss_pred hhhhhcC
Q psy5911 379 QAGVLSG 385 (1242)
Q Consensus 379 ~a~~l~~ 385 (1242)
.|+.-.|
T Consensus 433 la~~~~G 439 (470)
T PRK10331 433 FGWYGVG 439 (470)
T ss_pred HHHHhcC
Confidence 9987655
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.17 Score=59.73 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=48.9
Q ss_pred cCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhccc
Q psy5911 973 SKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 1026 (1242)
Q Consensus 973 ~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~ 1026 (1242)
..++.+.+.||.|+.|.+.+.+++.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 46888999999999999999999999999999999888 999999999988764
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.16 Score=62.40 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=45.0
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|.++||.++++.+.+++.+.||.++....++ ++.++|||+.|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 48899999999999999999999999999766655 5889999999987655
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.62 Score=51.27 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=39.5
Q ss_pred CCcceEEEecC-ccChHHHHHHHHHhc---ccccccCCCcchhhHhHHHH
Q psy5911 333 SKISEIILVGG-QTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 333 ~~i~~ViLvGG-~s~ip~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~ 378 (1242)
..+..|+++|| .+..|.+++.+...+ +.+...+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 677999999998777 56678888999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.16 Score=61.36 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=44.1
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~ 386 (1242)
.++.|.++||+++.+.+.+++.+.+|.++... +.++.|+|||+.|+.-.|.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999643 3678999999999876653
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.25 Score=54.71 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=42.8
Q ss_pred CcceEEEec-CcCchHHHHHHHHhhh---cccccccCCcchhhhhhHHHhhh
Q psy5911 974 KISEIILVG-GQTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 974 ~i~~ViLvG-G~s~ip~v~~~l~~~f---~~~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 7999999999999888 57788899999999999999875
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.2 Score=61.47 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=44.3
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|.++||++++|.+.+++.+.||.++.... ..++.|+|||+.|+.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHHHHhhcC
Confidence 478899999999999999999999999996544 457889999999987665
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=5.3 Score=46.14 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=35.8
Q ss_pred CcceEEEecCccChHHHHHHHHHhcc----cccccCCCcchhhHhHHHH
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFE----KEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~----~~~~~~~~p~~ava~GAa~ 378 (1242)
++|.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999988887763 3445556667899999854
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.27 Score=55.79 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=48.3
Q ss_pred HhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhh
Q psy5911 966 NDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 966 ~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+..+........|+.|||.||...|-+.|.+.||.+++.. +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3445556678999999999999999999999999999855 8888999999999864
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.22 Score=61.28 Aligned_cols=51 Identities=27% Similarity=0.419 Sum_probs=44.7
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.++.|.++||.++++.+.+++.+.+|.++....++ ++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 47899999999999999999999999999866655 5789999999987655
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.31 Score=57.56 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC
Q psy5911 311 EDLISKSLKPCEVALNDAKIDK-SKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386 (1242)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~ 386 (1242)
.-.++.+.--.+..|+...... ..|+.+.+.||.|+-|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 390 ~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 390 RAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 3444444333333443332222 56888999999999999999999999999999999888 999999999988775
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.4 Score=45.94 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=26.2
Q ss_pred EEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCC--chHHH--HHHHHHH
Q psy5911 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG--GEDFD--MRIINHL 881 (1242)
Q Consensus 831 vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lG--G~~~D--~~l~~~l 881 (1242)
++++|+|++++.+++++.... +.++++..+....-| |..+. +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~---~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD---GYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE---EEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCC---CcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 577899999999999997431 455665443222111 55555 5554443
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.28 Score=59.49 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=43.9
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~ 386 (1242)
.++.|.++||+++++.+.+++.+.+|.++.... .++.++|||+.|+.-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999999996543 378999999999876653
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.3 Score=49.69 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=40.0
Q ss_pred eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHH
Q psy5911 297 LNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355 (1242)
Q Consensus 297 ~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~ 355 (1242)
-.+.||..+++++.. .-.-+..-++-.|++++++.++|+.|+|.||++.---+++.+.
T Consensus 291 ~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 357899999987532 3345667788899999999999999999999998666665553
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=2 Score=52.36 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCeeeeechHHHHHHHh-ccCCC-CCCcEEEEEEeCCcceeeeEEE
Q psy5911 150 SQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK-PDDRIIVVYDLGGGTFDISVIE 207 (1242)
Q Consensus 150 ~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~-~~~~~vlV~D~GggT~Dvsv~~ 207 (1242)
+....+.++-+..|+++ ++|+..+=|.+.| +.... +.....+|+|+|||++.+++++
T Consensus 92 N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 92 NADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence 34555666667789987 5666555555544 33222 2234578899999999999875
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.2 Score=49.04 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=39.7
Q ss_pred cCcceEEEecC-cCchHHHHHHHHhhh---cccccccCCcchhhhhhHHH
Q psy5911 973 SKISEIILVGG-QTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 973 ~~i~~ViLvGG-~s~ip~v~~~l~~~f---~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
..+..|+++|| .+..|.+++.+...+ +.+...+.++...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35788999999 778999999998777 46778899999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.3 Score=54.06 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCeeeeechHHHHHHHh-ccCCC-CCCcEEEEEEeCCcceeeeEEE
Q psy5911 151 QRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK-PDDRIIVVYDLGGGTFDISVIE 207 (1242)
Q Consensus 151 qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~-~~~~~vlV~D~GggT~Dvsv~~ 207 (1242)
....+.++-+..|+++ ++|+..+=|.+.| +.... +..+..+|+|+|||++.+++++
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEec
Confidence 3444555566679987 5666665555555 33322 1234578899999999999986
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=91.55 E-value=7.6 Score=42.50 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=55.5
Q ss_pred CCcEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHcc---CCCC----CCCcEEEEEeeCCCceEEEEEE
Q psy5911 776 IEKAVITVPAYFNDSQRQATKD-AGKIAGLEVLRIINEPTAAALAYG---LDKK----PDDRIIVVYDLGGGTFDISVIE 847 (1242)
Q Consensus 776 ~~~~VitVPa~~~~~qr~~~~~-Aa~~AGl~~~~li~Ep~AAal~y~---~~~~----~~~~~vlV~D~GggT~dvsi~~ 847 (1242)
-.++++|-|.+--+.-.+.+.+ ..+.-+|+.+ ..-+.|+..++. .+.. ......+|+|-|-+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 4578999998765554444444 4455666543 333333333332 2221 1245789999999877665443
Q ss_pred EeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 848 IANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 848 ~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
-...-..... -..+||..++..|.+++.
T Consensus 171 ~g~~~~qaV~-------RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 KGIPYYQAVK-------RIDVGGKALTNLLKETIS 198 (400)
T ss_pred cCcchhhceE-------EeecchHHHHHHHHHHhh
Confidence 2211111111 235699999999888774
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.2 Score=48.50 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=40.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCeeee---echHHHHHHHhccCC--CCCCcEEEEEEeCCcceeeeEEEEEe
Q psy5911 139 AVITVPAYFNDSQRQATKDAGKIAGLEVLRI---INEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIEIAN 210 (1242)
Q Consensus 139 ~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~l---i~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~Dvsv~~~~~ 210 (1242)
+.||=-..-..+.|.++..-...||==++.- --|+.-|.-..+... .+....++=+|+||||+..|++.-.+
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk 166 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK 166 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc
Confidence 4556555555666666655555555322211 123333332222211 12456688899999999999986554
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.55 Score=53.36 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=48.0
Q ss_pred HHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 326 NDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 326 ~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+..+........|+.|||.|+-..|-+.|.+.||.++... +-.++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3455566678999999999999999999999999998865 7788999999998764
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=90.05 E-value=3 Score=48.68 Aligned_cols=123 Identities=9% Similarity=0.008 Sum_probs=70.7
Q ss_pred eecChHHHHHHHHHHHHHHHHhHhcCC----CCcEEEEecCCCCHHHHHHHHHH-HHHcCCCeeeeechHHHHHHHhccC
Q psy5911 109 KKLAPPQISAEILKKMKSTAETFLNEK----IEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLD 183 (1242)
Q Consensus 109 ~~~~~~~v~a~~L~~l~~~a~~~~~~~----~~~~vitVPa~f~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~ 183 (1242)
..++-.++...+|.|+..+ +|.. ...+++|=+..=...+|+.|.+- .+.-|++-+.+=-...=+.++ ..
T Consensus 89 nVvtNwel~E~ilDY~F~~----LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--N~ 162 (645)
T KOG0681|consen 89 NVVTNWELMEQILDYIFGK----LGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--NY 162 (645)
T ss_pred CccccHHHHHHHHHHHHHh----cCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh--cc
Confidence 3456667777777777665 4432 23477787776667788888765 455688765443222222111 11
Q ss_pred CCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHH
Q psy5911 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244 (1242)
Q Consensus 184 ~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~ 244 (1242)
........+|+++|..+|-|-.+--+. . ++....-.++||...-.-|.+++..+
T Consensus 163 ~~~~~~~~liis~g~~~T~vipvldG~----~---il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 163 GKSSNKSGLIISMGHSATHVIPVLDGR----L---ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred CcccCcceEEEecCCCcceeEEEecCc----h---hhhcceeeccCcchHHHHHHHHHhcc
Confidence 112333678889999999887664222 1 22333345679987665555554433
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.4 Score=44.29 Aligned_cols=30 Identities=43% Similarity=0.367 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCeeeeechHHHHHHH
Q psy5911 150 SQRQATKDAGKIAGLEVLRIINEPTAAALA 179 (1242)
Q Consensus 150 ~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~ 179 (1242)
...+.+.++.+.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 347778899999999999999999998754
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=89.23 E-value=3 Score=47.18 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCeeeeechHHHHHHHh-ccCCCCCCcEEEEEEeCCcceeeeEEE
Q psy5911 153 QATKDAGKIAGLEVLRIINEPTAAALAY-GLDKKPDDRIIVVYDLGGGTFDISVIE 207 (1242)
Q Consensus 153 ~~~~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~vlV~D~GggT~Dvsv~~ 207 (1242)
..+...-...|+++ ++++...=|.+.| +....-.....+++|+|||++.++.+.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEec
Confidence 33444445679877 6777777776665 222111112238889999999999875
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.5 Score=49.93 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHH-----HcCCCe------eeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEE
Q psy5911 149 DSQRQATKDAGK-----IAGLEV------LRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 207 (1242)
Q Consensus 149 ~~qr~~~~~Aa~-----~AGl~~------~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~ 207 (1242)
+..|+++++... .-|++. -.+++-|.|+..+...-.......+|++|+||-||||-.+.
T Consensus 197 ~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 197 EPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhc
Confidence 344666665542 225533 34666676665443222222556789999999999997665
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.43 Score=55.22 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCcCC--cceEEEecCccChHHHHHHHHHhc------cc--ccccCCCcchhhHhHHHHhhhh
Q psy5911 317 SLKPCEVALNDAKIDKSK--ISEIILVGGQTRMPLVQKMVSEFF------EK--EVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 317 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~ip~v~~~l~~~f------~~--~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+.+++..+|.....+... +..|+|+||+|.+|.+.+.|..-+ |. .+....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 445566666654333222 889999999999999999998765 43 4667889999999999999975
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=88.44 E-value=3.5 Score=48.27 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=56.0
Q ss_pred cEEEEecCCCCHHHHHHHHHHHHHcCCceeee---echhHHHHHHccCCC--CCCCcEEEEEeeCCCceEEEEEEEeecC
Q psy5911 778 KAVITVPAYFNDSQRQATKDAGKIAGLEVLRI---INEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIEIANVD 852 (1242)
Q Consensus 778 ~~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~l---i~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~dvsi~~~~~~~ 852 (1242)
-+.||==+.-.+++|..+..-+..||==++.- =.|+.-|+-..|... ......|+-+|+||||+.+++++-..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 36777777778888888888888887322221 135555554433322 13456789999999999999998654
Q ss_pred CCceEEEEEecCCCCCCchH
Q psy5911 853 GETQFEVLSTNGDTFLGGED 872 (1242)
Q Consensus 853 ~~~~~~v~~~~~~~~lGG~~ 872 (1242)
+..+.. .++||+.
T Consensus 165 ------v~~T~c-l~IGGRL 177 (473)
T PF06277_consen 165 ------VIDTAC-LDIGGRL 177 (473)
T ss_pred ------EEEEEE-EeeccEE
Confidence 333333 4568864
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=86.13 E-value=3.3 Score=45.26 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=45.8
Q ss_pred cceEEEecC--ccChH-HHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEe
Q psy5911 335 ISEIILVGG--QTRMP-LVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLD 394 (1242)
Q Consensus 335 i~~ViLvGG--~s~ip-~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d 394 (1242)
...|+|.|- +++.| .+++.|++.+..++..- .. ++.|.|+|+.|.-+.+..++++-++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L-~~-ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVL-DS-ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEe-cc-hhhhhhHHHHHHHHhCCcceEeeee
Confidence 458999987 99999 99999999998665432 22 8899999999988887766665443
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=85.41 E-value=3.4 Score=45.18 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=45.7
Q ss_pred cceEEEecC--cCchH-HHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEee
Q psy5911 975 ISEIILVGG--QTRMP-LVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLD 1034 (1242)
Q Consensus 975 i~~ViLvGG--~s~ip-~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~ 1034 (1242)
...|+|.|- +++.| .+++.|++.+..++.. +.. +..|.|+|+.|.-+.+..++++-++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCCcceEeeee
Confidence 458999997 99999 9999999999866543 333 8899999999988877666655433
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=84.66 E-value=52 Score=37.78 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=36.4
Q ss_pred CcceEEEecCccChHHHHHHHHHhc---ccccccCC---CcchhhHhHHHHhh
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFF---EKEVKKDI---NPDEAVAVGASVQA 380 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a 380 (1242)
+++.|+|+||.+.-.++++.|.+.+ +.++..+. --|.+++.|+|=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4778999999999999999999887 55555443 34788888887443
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.57 E-value=7 Score=46.96 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCC---CHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCC-Cc
Q psy5911 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYF---NDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD-DR 829 (1242)
Q Consensus 754 ~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~---~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~~ 829 (1242)
++.....+..|+..++..-+.++.++.+ |=... -.+.-+.+..+-+..|+++--+=-|-+|--.++|....-. ..
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~ 129 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKG 129 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCC
Confidence 4455555666666665555555555322 21111 1223455777778889988555555565544444433322 66
Q ss_pred EEEEEeeCCCceEEEEEEE
Q psy5911 830 IIVVYDLGGGTFDISVIEI 848 (1242)
Q Consensus 830 ~vlV~D~GggT~dvsi~~~ 848 (1242)
..+|+|+|||+|.+++..-
T Consensus 130 ~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 130 DGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CEEEEEecCCeEEEEEecC
Confidence 7899999999999999863
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.17 E-value=5.6 Score=42.04 Aligned_cols=69 Identities=23% Similarity=0.262 Sum_probs=39.9
Q ss_pred HHHHHHHHHhHhcCCCCcEEEEecCCCCHH-HHHHHHHHHHHcCCCeeeeechHHHHHHHhccCC---CCCCcEEEEEEe
Q psy5911 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDS-QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK---KPDDRIIVVYDL 196 (1242)
Q Consensus 121 L~~l~~~a~~~~~~~~~~~vitVPa~f~~~-qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~~~~vlV~D~ 196 (1242)
..++.+..+..++.++ .++++-..|... .....++. |||-+.+..+ ....+.++++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEec
Confidence 4566777777777655 789999888764 22212222 1221111100 113444566699
Q ss_pred CCcceeeeEEE
Q psy5911 197 GGGTFDISVIE 207 (1242)
Q Consensus 197 GggT~Dvsv~~ 207 (1242)
|..|+|+.-+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987664
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.66 E-value=8 Score=46.47 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCC---CHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCC-Cc
Q psy5911 114 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYF---NDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD-DR 189 (1242)
Q Consensus 114 ~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f---~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~~ 189 (1242)
++.+...+..|+..++..-+.++.++.+ |=... -.+.-+.+..+-+..|+++--+=-|-+|--.++|....-. ..
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~ 129 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKG 129 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCC
Confidence 3444555555555555544555555322 22111 1334556777888889987555555555444444433322 66
Q ss_pred EEEEEEeCCcceeeeEEEE
Q psy5911 190 IIVVYDLGGGTFDISVIEI 208 (1242)
Q Consensus 190 ~vlV~D~GggT~Dvsv~~~ 208 (1242)
..+|+|+|||++.+++..-
T Consensus 130 ~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 130 DGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CEEEEEecCCeEEEEEecC
Confidence 7889999999999999863
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.74 E-value=3.7 Score=47.79 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 949 LVEDLISKSLKPCEVAL----NDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 949 ~~~~~~~~~~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
+++-.++.+.-...+++ ++++. ++..+-+=||.|+..++.+...+.+|.+|.++.+ .|+.|+|||+.|+.-.
T Consensus 376 i~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~ 451 (499)
T COG0554 376 IARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhhhh
Confidence 44444444444434333 34443 5888889999999999999999999999886665 5678999999998877
Q ss_pred cc
Q psy5911 1025 GV 1026 (1242)
Q Consensus 1025 ~~ 1026 (1242)
|.
T Consensus 452 G~ 453 (499)
T COG0554 452 GF 453 (499)
T ss_pred Cc
Confidence 63
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=15 Score=42.56 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=36.3
Q ss_pred CcceEEEecCcCchHHHHHHHHhhhc----ccccccCCcchhhhhhHHH
Q psy5911 974 KISEIILVGGQTRMPLVQKMVSEFFE----KEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 974 ~i~~ViLvGG~s~ip~v~~~l~~~f~----~~v~~~~~p~~aVa~GAa~ 1018 (1242)
++|.|+|.||.+..+.+++.|++.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999998887763 3455566667899999864
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=80.51 E-value=5.7 Score=44.25 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhh-----cccccccCCcchhhhhhHHHhh
Q psy5911 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-----EKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 948 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-----~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++++...+.+.+.+...+.+....... |+|+||..+.+.+++.+.+.+ ..++..+..|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 455555666666677777766543322 999999999977777775554 2345667889999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1242 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 0.0 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 0.0 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-157 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-154 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-156 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-153 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-135 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-133 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-135 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-133 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-133 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-131 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-101 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-98 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-96 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 3e-94 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 2e-96 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 2e-94 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 2e-96 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 2e-94 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 2e-96 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 2e-94 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-96 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 3e-94 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 2e-96 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 2e-94 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 2e-96 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 3e-94 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-96 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-94 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 4e-96 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 5e-94 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-96 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 6e-94 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 5e-96 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 7e-94 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-96 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 7e-94 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-96 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-94 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 5e-96 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 7e-94 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 7e-96 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-93 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 7e-96 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-93 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 8e-96 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-93 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 8e-96 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-94 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 8e-96 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-93 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 8e-96 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-93 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 9e-96 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-93 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 9e-96 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-93 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-95 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-93 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 2e-95 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 3e-93 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-95 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-93 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 2e-95 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 3e-93 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 3e-95 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 4e-93 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 4e-95 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 5e-93 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-95 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-93 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 7e-95 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 9e-93 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 8e-95 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-92 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-94 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-92 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-94 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-91 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-94 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-91 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 6e-94 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 2e-91 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 6e-94 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-91 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 7e-94 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 2e-91 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 7e-94 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 2e-91 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 7e-94 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-91 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-93 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 3e-91 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 6e-93 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 4e-91 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-92 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 3e-90 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 5e-89 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 5e-87 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-57 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-57 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 7e-57 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 8e-56 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 6e-47 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 4e-44 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 5e-44 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 3e-43 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 6e-44 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-43 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 9e-44 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 5e-43 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 9e-44 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 5e-43 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-42 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-42 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-42 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-42 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 2e-38 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 2e-38 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 1e-35 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 1e-35 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 2e-35 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 2e-35 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-32 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-32 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-32 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-32 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 9e-27 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 2e-24 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 5e-26 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 6e-08 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-07 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 3e-06 | ||
| 3h1q_A | 272 | Crystal Structure Of Ethanolamine Utilization Prote | 7e-06 | ||
| 3h1q_A | 272 | Crystal Structure Of Ethanolamine Utilization Prote | 2e-05 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj From Carboxydothermus Hydrogenoformans Length = 272 | Back alignment and structure |
|
| >pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj From Carboxydothermus Hydrogenoformans Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1242 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-109 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 4e-92 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 1e-104 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 5e-87 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-101 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 6e-97 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 1e-86 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 4e-85 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 1e-80 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 1e-80 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 7e-76 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 4e-75 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 7e-75 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 3e-74 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 2e-74 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 9e-74 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 2e-38 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 7e-35 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 3e-23 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 8e-22 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 2e-21 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 6e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 1e-11 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 5e-09 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 4e-10 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 4e-10 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 8e-10 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 3e-07 | |
| 1dkg_A | 197 | Nucleotide exchange factor GRPE; HSP70, GRPE, nucl | 1e-09 | |
| 3a6m_A | 177 | Protein GRPE, HSP-70 cofactor; coiled-coil, four-h | 2e-07 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 3e-07 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 3e-05 | |
| 4ani_A | 213 | Protein GRPE; chaperone cycle, complementary assay | 3e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 7e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 7e-06 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 1e-05 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 1e-05 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 7e-04 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 7e-04 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1036 bits (2681), Expect = 0.0
Identities = 389/592 (65%), Positives = 498/592 (84%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA+VQ GVL+G VKDVLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTA
Sbjct: 370 AVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AK
Sbjct: 430 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KF+ELV+ +N+ D + +K
Sbjct: 490 DKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQ 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+++ K+ ++K +IE +++ LE +KG+D I+ ++L ++S+ +++
Sbjct: 550 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 601
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1007 bits (2607), Expect = 0.0
Identities = 392/616 (63%), Positives = 500/616 (81%), Gaps = 13/616 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K +R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 302
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLESLVEDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 303 AKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPR 362
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
KD+NPDEAVA+GA+VQ GVL+G VKDVLLLDVTPL+LGIETMGGVMT LI KNTTIPT+
Sbjct: 363 KDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKH 422
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTAEDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+G
Sbjct: 423 SQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADG 482
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIII 543
IL+V+AKDK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KF+ELV+ +N+
Sbjct: 483 ILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGD-- 540
Query: 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKES 603
+ T+K+ + DK+ + IE+ + L +++ ++ + + K
Sbjct: 541 ------HLLHSTRKQVEEAGDKLPADDKTAIESALTAL---ETALK--GEDKAAIEAKMQ 589
Query: 604 EIIFLIFKLIKKFYKK 619
E+ + KL++ ++
Sbjct: 590 ELAQVSQKLMEIAQQQ 605
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 915 bits (2367), Expect = 0.0
Identities = 315/536 (58%), Positives = 397/536 (74%), Gaps = 31/536 (5%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAVL G+ +VI N EG RTTPSVV + R+ VG AKRQAITNP
Sbjct: 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERL-VGEVAKRQAITNP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
N T+ +IKR +G Y VE++ K+ P +ISA IL+
Sbjct: 62 N-TIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIILQY 96
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+KS AE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +D+ I+VYDLGGGTFD+S++E+ G+ FEV +T GD LGG+DFD II++L+
Sbjct: 157 KE-EDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDYLVN 211
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+FK E+G+DLS D +A+QRLK+AAEKAK ELS QT I+LP+I+A++NGP HL + +TR
Sbjct: 212 QFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTR 271
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L L+ +++ P AL DA + + I ++ILVGG TR+P VQ+ + KE
Sbjct: 272 AKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPH 331
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GV++G VKDV+LLDVTPL+LGIETMGGV T LIE+NTTIPT K
Sbjct: 332 KGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSK 391
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVF+TA DNQT+V IH LQGER A+ NKSLG+F L I PAPRGVPQIEV+FD+DANG
Sbjct: 392 SQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANG 451
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
I++V AKD T KEQSI IKSS GLSE EI+ MIK+AE N+E D+K +E + +NE
Sbjct: 452 IVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNE 507
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 897 bits (2320), Expect = 0.0
Identities = 309/531 (58%), Positives = 391/531 (73%), Gaps = 31/531 (5%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL G+ +VI N EG RTTPSVV + R+ VG AKRQAITNPN T+ +I
Sbjct: 10 GTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERL-VGEVAKRQAITNPN-TIISI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +G Y VE++ + P +ISA IL+ +KS AE
Sbjct: 68 KRHMGTDY------------------------KVEIEGKQYTPQEISAIILQYLKSYAED 103
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK+ +D+
Sbjct: 104 YLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE-EDQT 162
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+VYDLGGGTFD+S++E+ G+ FEV +T GD LGG+DFD II++L+ +FK E+G
Sbjct: 163 ILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHG 218
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRLK+AAEKAK ELS QT I+LP+I+A++NGP HL + +TR+K E L
Sbjct: 219 IDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELS 278
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
L+ +++ P AL DA + + I ++ILVGG TR+P VQ+ + KE K +NPDE
Sbjct: 279 AHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDE 338
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GV++G VKDV+LLDVTPL+LGIETMGGV T LIE+NTTIPT K+QVF+TA
Sbjct: 339 VVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTA 398
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQT+V IH LQGER A+ NKSLG+F L I PAPRGVPQIEV+FD+DANGI++V AK
Sbjct: 399 ADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAK 458
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181
D T KEQSI IKSS GLSE EI+ MIK+AE N+E D+K +E + +NEAD
Sbjct: 459 DLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 864 bits (2234), Expect = 0.0
Identities = 288/548 (52%), Positives = 372/548 (67%), Gaps = 19/548 (3%)
Query: 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAIT 61
+GIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAM 61
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVA-ADNGDAWVEVK--DKKLAPPQISA 118
NP NT++ KRLIGR++ D +VQ+ +K P+ +V A VE K K P ++S+
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSS 121
Query: 119 EILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
+L KMK AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+
Sbjct: 122 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 181
Query: 179 AYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
AYGLDKK +R ++++DLGGGTFD+S++ I FEV ST GDT LGGEDFD R+
Sbjct: 182 AYGLDKKVGAERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDNRM 237
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL 297
+NH I EFK ++ D+S + A++RL+ A E+AK LS++ Q I + +
Sbjct: 238 VNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DF 293
Query: 298 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 357
ITR++ E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +F
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF 353
Query: 358 FE-KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPL 412
F KE+ K INPDEAVA GA+VQA +LSG V+D+LLLDVTPL+LGIET GGVMT L
Sbjct: 354 FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVL 413
Query: 413 IEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 472
I++NTTIPT++TQ F+T DNQ V I +GER N LGKF+L I PAPRGVPQ
Sbjct: 414 IKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 473
Query: 473 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFE 531
IEV+FD+DANGILNV+A DK TGKE I I + G LS+ +IE M+++AE D+K
Sbjct: 474 IEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR 533
Query: 532 ELVKCKNE 539
+ V KN
Sbjct: 534 DKVSSKNS 541
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 859 bits (2223), Expect = 0.0
Identities = 286/552 (51%), Positives = 373/552 (67%), Gaps = 19/552 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q NP NT++
Sbjct: 12 GTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAMNPTNTVFDA 70
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVA-ADNGDAWVEVKDQ--YCAPPQISAEILKKMKST 767
KRLIGR++ D +VQ D+K P+ +V A VE K + P ++S+ +L KMK
Sbjct: 71 KRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEI 130
Query: 768 AETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD 827
AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYGLDKK
Sbjct: 131 AEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVG 190
Query: 828 -DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+R ++++DLGGGTFD+S++ I FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 191 AERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 246
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 247 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARF 302
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKD 1005
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 303 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 362
Query: 1006 INPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 1061
INPDEAVA GA+VQA +LSG V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT
Sbjct: 363 INPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPT 422
Query: 1062 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 1121
++TQ F+T DNQ V I +GER N LGKF+L I PAPRGVPQIEV+FD+DA
Sbjct: 423 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDA 482
Query: 1122 NGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFEELVKCKNEA 1180
NGILNV+A DK TGKE I I + G LS+ +IE M+++AE D+K + V KN
Sbjct: 483 NGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSL 542
Query: 1181 DSTISIVKKNLK 1192
+S +K ++
Sbjct: 543 ESYAFNMKATVE 554
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 769 bits (1989), Expect = 0.0
Identities = 149/619 (24%), Positives = 272/619 (43%), Gaps = 42/619 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G NS +AV N ++ N R+TPSVVG+ NR + G K + +N NT+ +
Sbjct: 10 GNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKNTVANL 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR+IG Y +++ K K+V D+ EV + + Q++A + K+K
Sbjct: 69 KRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKD 128
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK- 825
T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++YG+ K
Sbjct: 129 TVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTD 188
Query: 826 -----PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
RI+ D+G ++ S++ + Q +VL T D GG DFD+ I H
Sbjct: 189 LPEGEEKPRIVAFVDIGHSSYTCSIMAF----KKGQLKVLGTACDKHFGGRDFDLAITEH 244
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVK 940
EFK + +D+ + A R+ AAEK K LS ++ + ++ +
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVM----NDVDVSSQ 300
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 1000
++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +SE F K
Sbjct: 301 LSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGK 360
Query: 1001 EVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGV----MTPLIE 1054
+ +N DEA+A GA+ + S V+ D+ P ++ V +
Sbjct: 361 PLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFP 420
Query: 1055 KNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS--PAPRGVPQ 1112
++ P+ K + D + + + + + +++ + VP
Sbjct: 421 AGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP- 477
Query: 1113 IEVSFDLDANGILNV----------TAKDKKTGKEQSIIIK-SSGGLSEIEIENMIKDAE 1161
+++ D +G+ + D KT K+ + I + GL ++ +I+
Sbjct: 478 VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKEN 537
Query: 1162 LNSELDKKFEELVKCKNEADSTISIVKKNLKDE-NTKITDEEKESIEKSISNLELLIKGD 1220
DK E KN + I ++ L++E +D EK ++ ++ E + +
Sbjct: 538 EMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDE 597
Query: 1221 DIELIKKGNEDLLKISENI 1239
+ IK + ++
Sbjct: 598 GFDSIKAKYIAKYEELASL 616
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 755 bits (1951), Expect = 0.0
Identities = 149/647 (23%), Positives = 274/647 (42%), Gaps = 53/647 (8%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
G+DLG NS +AV N ++ N R+TPSVVG+ NR + G K + +N
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNI 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAE 119
NT+ +KR+IG Y + K K+V D+ EV + + Q++A
Sbjct: 62 KNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAM 121
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
+ K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 180 YGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 233
YG+ K RI+ D+G ++ S++ + Q +VL T D GG DF
Sbjct: 182 YGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF----KKGQLKVLGTACDKHFGGRDF 237
Query: 234 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG 293
D+ I H EFK + +D+ + A R+ AAEK K LS ++ +
Sbjct: 238 DLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVM----N 293
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++
Sbjct: 294 DVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 353
Query: 354 VSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGV--- 408
+SE F K + +N DEA+A GA+ + S V+ D+ P ++ V
Sbjct: 354 ISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDE 413
Query: 409 -MTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS--P 465
+ ++ P+ K + D + + + + + +++ +
Sbjct: 414 DHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPE 471
Query: 466 APRGVPQIEVSFDLDANGILNV----------TAKDKKTGKEQSIIIK-SSGGLSEIEIE 514
VP +++ D +G+ + D KT K+ + I + GL ++
Sbjct: 472 GQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLN 530
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKE-TDYDEDKIRKLKEIV 573
+I+ DK E KN LE ++ + + + ++
Sbjct: 531 ELIEKENEMLAQDKLVAETEDRKNT----LE----EYIYTLRGKLEEEYAPFASDAEKTK 582
Query: 574 IENIIIELIP-ITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKK 619
++ ++ + + D K + +E + + ++ K
Sbjct: 583 LQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGN--IIRGRYLAK 627
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 732 bits (1892), Expect = 0.0
Identities = 270/381 (70%), Positives = 328/381 (86%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K +R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 302
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLESLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 303 AKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPR 362
Query: 364 KDINPDEAVAVGASVQAGVLS 384
KD+NPDEAVA+GA+VQ GVL+
Sbjct: 363 KDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 715 bits (1848), Expect = 0.0
Identities = 264/374 (70%), Positives = 321/374 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLS 1024
AVA+GA+VQ GVL+
Sbjct: 370 AVAIGAAVQGGVLT 383
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 591 bits (1525), Expect = 0.0
Identities = 198/392 (50%), Positives = 260/392 (66%), Gaps = 16/392 (4%)
Query: 1 QYCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAI 60
Q IGIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVA 79
Query: 61 TNPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVA-ADNGDAWVEVK--DKKLAPPQIS 117
NP NT++ KRLIGRK+ D VQ+ +K P+++V+ VE K K P +IS
Sbjct: 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 118 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
+ +L KMK AE +L K+ AVITVPAYFNDSQRQATKDAG I GL VLRIINEPTAAA
Sbjct: 140 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 199
Query: 178 LAYGLDKKPD---DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234
+AYGLDKK ++ ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD
Sbjct: 200 IAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFD 255
Query: 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGP 294
R+++HL EFK ++ D+ + A++RL+ A E+AK LS++ Q I + +
Sbjct: 256 NRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG---- 311
Query: 295 KHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMV 354
ITR++ E L DL +L+P E AL DAK+DK +I EI+LVGG TR+P +QK++
Sbjct: 312 VDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLL 371
Query: 355 SEFFE-KEVKKDINPDEAVAVGASVQAGVLSG 385
+FF KE+ K INPDEAVA GA+VQA +L G
Sbjct: 372 QDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 576 bits (1488), Expect = 0.0
Identities = 196/394 (49%), Positives = 258/394 (65%), Gaps = 22/394 (5%)
Query: 639 AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQ 698
AIGI GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 25 AIGI------DLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQ 77
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVA-ADNGDAWVEVKDQYC--APPQ 755
NP NT++ KRLIGRK+ D VQ D+K P+++V+ VE K + P +
Sbjct: 78 VAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEE 137
Query: 756 ISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 815
IS+ +L KMK AE +L K+ AVITVPAYFNDSQRQATKDAG I GL VLRIINEPTA
Sbjct: 138 ISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTA 197
Query: 816 AALAYGLDKKPD---DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 872
AA+AYGLDKK ++ ++++DLGGGTFD+S++ I + FEV ST GDT LGGED
Sbjct: 198 AAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGED 253
Query: 873 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKN 932
FD R+++HL EFK ++ D+ + A++RL+ A E+AK LS++ Q I + +
Sbjct: 254 FDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG-- 311
Query: 933 GPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQK 992
ITR++ E L DL +L+P E AL DAK+DK +I EI+LVGG TR+P +QK
Sbjct: 312 --VDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQK 369
Query: 993 MVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSG 1025
++ +FF KE+ K INPDEAVA GA+VQA +L G
Sbjct: 370 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-109
Identities = 121/210 (57%), Positives = 170/210 (80%)
Query: 1030 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 1089
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++VTIH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 1090 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLS 1149
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 1150 EIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKS 1209
E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K +++ K+ ++K +IE +
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 1210 ISNLELLIKGDDIELIKKGNEDLLKISENI 1239
++ LE +KG+D I+ ++L ++S+ +
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKL 210
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 4e-92
Identities = 114/192 (59%), Positives = 150/192 (78%), Gaps = 8/192 (4%)
Query: 390 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 449
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++VTIH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 450 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLS 509
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKL 569
E EI+ M++DAE N+E D+KFEELV+ +N+ + T+K+ + DK+
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGD--------HLLHSTRKQVEEAGDKLPAD 172
Query: 570 KEIVIENIIIEL 581
+ IE+ + L
Sbjct: 173 DKTAIESALTAL 184
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-104
Identities = 78/207 (37%), Positives = 131/207 (63%)
Query: 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 1092
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1093 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIE 1152
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S GL++ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISN 1212
I +MIKD+ +E D K L + K EA + + L + ++ E++ I+ + ++
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 1213 LELLIKGDDIELIKKGNEDLLKISENI 1239
L + +GDD++ I++ +++ K +++
Sbjct: 181 LSEVAQGDDVDAIEQAIKNVDKQTQDF 207
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 5e-87
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 8/189 (4%)
Query: 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 452
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 453 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIE 512
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S GL++ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 513 IENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEI 572
I +MIKD+ +E D K L + K E + D + +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAA--------RVLESLHGALAADAALLSAAERQ 172
Query: 573 VIENIIIEL 581
VI++ L
Sbjct: 173 VIDDAAAHL 181
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-101
Identities = 96/174 (55%), Positives = 125/174 (71%)
Query: 1019 QAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVT 1078
L +DVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA D QT V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 1079 IHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQ 1138
I QGER+ A NK LG+F L I PAPRGVPQIEV+FD+DANGI++V+AKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 1139 SIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLK 1192
I+I+SSGGLS+ +IENM+K+AE +E D++ +E V+ N A+ I + ++
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 6e-97
Identities = 98/171 (57%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Query: 379 QAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVT 438
L +DVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA D QT V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 439 IHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQ 498
I QGER+ A NK LG+F L I PAPRGVPQIEV+FD+DANGI++V+AKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 499 SIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN--EQIIILEEK 547
I+I+SSGGLS+ +IENM+K+AE +E D++ +E V+ N E II E
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTET 179
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 1e-86
Identities = 96/148 (64%), Positives = 122/148 (82%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DVTPL+LGIET+GG+MT LI +NTTIPT+K+QVFSTA D QT V I QGER+ A+ NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEI 1153
LG+F L I PAPRGVPQ+EV+FD+DANGI+NV+A+D+ TGKEQ I+I+SSGGLS+ +I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 1154 ENMIKDAELNSELDKKFEELVKCKNEAD 1181
ENMIK+AE N+ D K +ELV+ N+A+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 4e-85
Identities = 95/146 (65%), Positives = 120/146 (82%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DVTPL+LGIET+GG+MT LI +NTTIPT+K+QVFSTA D QT V I QGER+ A+ NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEI 513
LG+F L I PAPRGVPQ+EV+FD+DANGI+NV+A+D+ TGKEQ I+I+SSGGLS+ +I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 514 ENMIKDAELNSELDKKFEELVKCKNE 539
ENMIK+AE N+ D K +ELV+ N+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQ 149
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 1e-80
Identities = 89/135 (65%), Positives = 113/135 (83%)
Query: 374 VGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDN 433
+G+S V + ++DVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 434 QTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKK 493
Q++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 494 TGKEQSIIIKSSGGL 508
+GKEQ I IK+S GL
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 1e-80
Identities = 89/135 (65%), Positives = 113/135 (83%)
Query: 1014 VGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDN 1073
+G+S V + ++DVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 1074 QTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKK 1133
Q++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 1134 TGKEQSIIIKSSGGL 1148
+GKEQ I IK+S GL
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 7e-76
Identities = 79/149 (53%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV PLTLGIET+GGVMT LI +NT IPT+K+QVFSTA D+Q++V+I +GER N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LG FD+ I PAPRGVPQIEV+F++D NGIL+V+A+DK TG + + I + LS +
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
IE MI DA+ + D+ +E V+ +NE +
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 4e-75
Identities = 79/147 (53%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV PLTLGIET+GGVMT LI +NT IPT+K+QVFSTA D+Q++V+I +GER N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LG FD+ I PAPRGVPQIEV+F++D NGIL+V+A+DK TG + + I + LS +
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
IE MI DA+ + D+ +E V+ +NE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNE 150
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 7e-75
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV LTLGIET GGVMTPLI++NT IPT+K+Q+FSTA DNQ +V I +GER + N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LGKF+L I PAPRGVPQIEV+F LDANGIL V+A DK TGK +SI I + G L++ E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
I+ M+++AE + D + V+ +N+ +
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 3e-74
Identities = 82/147 (55%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV LTLGIET GGVMTPLI++NT IPT+K+Q+FSTA DNQ +V I +GER + N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LGKF+L I PAPRGVPQIEV+F LDANGIL V+A DK TGK +SI I + G L++ E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
I+ M+++AE + D + V+ +N+
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNK 150
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 2e-74
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV PL+LGIET GGVMT LI++NT IPT+ + F+T DNQ V+I +GER N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LG F+L+ I PAPRGVPQIEV+F++DANGILNV+A+DK TGK I I++ G L++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
I+ M+ +A+ + D + E V+ +N+ +
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 9e-74
Identities = 74/147 (50%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV PL+LGIET GGVMT LI++NT IPT+ + F+T DNQ V+I +GER N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LG F+L+ I PAPRGVPQIEV+F++DANGILNV+A+DK TGK I I++ G L++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
I+ M+ +A+ + D + E V+ +N+
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQ 150
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 63/377 (16%), Positives = 113/377 (29%), Gaps = 112/377 (29%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNP 63
+ L N + + P VG I V +
Sbjct: 6 LEQKLNLLNDLI---VREIVNPLP-------PPYKVGVDLGTADIVLVVTDQEGI----- 50
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
V + A VKD + + +I+++
Sbjct: 51 -------------------------PVAGALKWAS------VVKDGLVVDYIGAIQIVRE 79
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K+ E L ++ +A +P +A AGLE++ +++EP AAA A G++
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
+V D+GGGT I+VIE + + D GG + +
Sbjct: 140 DG------IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLAGSYKI 184
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F E AE K + S +
Sbjct: 185 PF-------------------EEAETIKKDFSRHRE------------------------ 201
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ +V +I K + + + + + +VGG + + S F KEV+
Sbjct: 202 --IMRVVRPVIEKMALIVKEVIKNY----DQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQ 255
Query: 364 KDINPDEAVAVGASVQA 380
I+P +G ++
Sbjct: 256 VPIHPLLVTPLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 7e-35
Identities = 62/372 (16%), Positives = 110/372 (29%), Gaps = 112/372 (30%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNPNNTLY 708
N + + P VG I V +
Sbjct: 11 NLLNDLI---VREIVNPLP-------PPYKVGVDLGTADIVLVVTDQEGI---------- 50
Query: 709 AIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTA 768
V + A VKD + +I++++K+
Sbjct: 51 --------------------PVAGALKWAS------VVKDGLVVDYIGAIQIVRELKAKV 84
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E L ++ +A +P +A AGLE++ +++EP AAA A G++
Sbjct: 85 ERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDG--- 141
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+V D+GGGT I+VIE + + D GG + + F
Sbjct: 142 ---IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLAGSYKIPF--- 186
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
E AE K + S + +
Sbjct: 187 ----------------EEAETIKKDFSRHRE--------------------------IMR 204
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+V +I K + + + + + +VGG + + S F KEV+ I+P
Sbjct: 205 VVRPVIEKMALIVKEVIKNY----DQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHP 260
Query: 1009 DEAVAVGASVQA 1020
+G ++
Sbjct: 261 LLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 3e-23
Identities = 46/381 (12%), Positives = 119/381 (31%), Gaps = 68/381 (17%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++ ID G+TN + E+ + S + + + G N
Sbjct: 2 LVFIDDGSTNIKLQW--------QESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGE 53
Query: 65 NTLY---AIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
+ + ++ + + V + ++ + + V++ L
Sbjct: 54 QYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDI-----------VCTL 102
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+ + + + + +++ T + G ++ ++++ E A
Sbjct: 103 P-----LTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVL 157
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
+ D ++++ DLGG T DIS + + GD+ LG + + L
Sbjct: 158 QELDELDSLLII-DLGGTTLDISQVMGKLSG------ISKIYGDSSLGVSLVTSAVKDAL 210
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ LA + + + +I
Sbjct: 211 SLARTKGS------SYLADDIIIHRKDNNYL-------------------------KQRI 239
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM--PLVQKMVSEFFE 359
S+V + ++++L+ E + + + S + ++++GG + V+K E
Sbjct: 240 NDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDE 299
Query: 360 KEVKKDINPDEAVAVGASVQA 380
+ K + N + G +
Sbjct: 300 RFFKTN-NSQYDLVNGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 8e-22
Identities = 34/254 (13%), Positives = 85/254 (33%), Gaps = 41/254 (16%)
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
+ + + + + +++ T + G ++ ++++ E A + D
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELD 164
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
++++ DLGG T DIS + + GD+ LG + + L
Sbjct: 165 SLLII-DLGGTTLDISQVMGKLSG------ISKIYGDSSLGVSLVTSAVKDALSLARTKG 217
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
+ LA + + + +I S
Sbjct: 218 S------SYLADDIIIHRKDNNYL-------------------------KQRINDENKIS 246
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM--PLVQKMVSEFFEKEVKKDI 1006
+V + ++++L+ E + + + S + ++++GG + V+K E+ K +
Sbjct: 247 IVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTN- 305
Query: 1007 NPDEAVAVGASVQA 1020
N + G +
Sbjct: 306 NSQYDLVNGMYLIG 319
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 2e-21
Identities = 57/391 (14%), Positives = 115/391 (29%), Gaps = 94/391 (24%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
++G+D+G ++ + +GK + PS TE +G +
Sbjct: 22 VVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
K A + V D +LA + I
Sbjct: 72 QTKFIYGKY------------------------ASGNNIRVPQGDGRLASKEAFPLIAAA 107
Query: 124 MKSTAETFLNEKIEKAVIT-VPAYFNDSQRQATKDA------------GKIAGLEVLRII 170
+ + ++ + + P D + +A K+A G++ + R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 171 NEPTAAALAYGL----DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 226
P A L + VV D+G T D+ I + +++ V+ +
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-----VVELSFSL 222
Query: 227 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPY 286
+G D + + E D L + A + +Q
Sbjct: 223 QIGVGDAISALSRKIAKETGFVVPFD----------LAQEALSHPVMFRQ-KQVGGP--- 268
Query: 287 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346
+++ LE L +I + + + +++ +I VGG +
Sbjct: 269 -------------EVSGPILEDLANRIIEN-------IRLNLRGEVDRVTSLIPVGGGSN 308
Query: 347 MPLVQKMVSEFFEKEVKKDI--NPDEAVAVG 375
L+ E + K + A A+G
Sbjct: 309 --LIGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 82.9 bits (204), Expect = 6e-17
Identities = 57/404 (14%), Positives = 112/404 (27%), Gaps = 100/404 (24%)
Query: 637 HEAIGIYPTFGKKK------GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII 690
H + G+ P G ++ + +GK + PS TE
Sbjct: 9 HHSSGLVPRGSHMVVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWG 58
Query: 691 VGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQY 750
+G + K A + V D
Sbjct: 59 IGGKIPVLSTDGGQTKFIYGKY------------------------ASGNNIRVPQGDGR 94
Query: 751 CAPPQISAEILKKMKSTAETFLNEKIEKAVIT-VPAYFNDSQRQATKDA----------- 798
A + I + + ++ + + P D + +A K+A
Sbjct: 95 LASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGP 154
Query: 799 -GKIAGLEVLRIINEPTAAALAYGL----DKKPDDRIIVVYDLGGGTFDISVIEIANVDG 853
G++ + R+I P A L + VV D+G T D+ I + +++
Sbjct: 155 EGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP 214
Query: 854 ETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIE 913
V+ + +G D + + E D L + A +
Sbjct: 215 -----VVELSFSLQIGVGDAISALSRKIAKETGFVVPFD----------LAQEALSHPVM 259
Query: 914 LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKS 973
+Q +++ LE L +I + + +
Sbjct: 260 FRQ-KQVGGP----------------EVSGPILEDLANRIIEN-------IRLNLRGEVD 295
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI--NPDEAVAVG 1015
+++ +I VGG + L+ E + K + A A+G
Sbjct: 296 RVTSLIPVGGGSN--LIGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 5e-16
Identities = 69/406 (16%), Positives = 147/406 (36%), Gaps = 109/406 (26%)
Query: 872 DFDM--------RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI- 922
DF+ I++ F + K+ + K LS E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFD--------CKDVQDMPKSILSKEEIDHII 55
Query: 923 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP----CEVALNDAKIDKSKISEI 978
+G L SK E +V+ + + L+ + + S ++ +
Sbjct: 56 MSK---DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 979 -------ILVGGQ-------TRMPLVQKMVSEFFEKEVKKDINPDEAVAV-GASVQAGVL 1023
+ Q +R+ K+ ++ ++ P + V + G G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKL------RQALLELRPAKNVLIDG---VLG-- 160
Query: 1024 SGVVKDVLLLDVTPLTLGIE----------TMGGVMTP--LIEKNTTIPTRKTQVFSTAE 1071
SG K + LDV L+ ++ + +P ++E + + +++
Sbjct: 161 SG--KTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 1072 DNQTSV--TIHTLQGERKKASQNKSLGK--FDLNDISPAPRGVPQIEVSFDLDANGILNV 1127
D+ +++ IH++Q E ++ ++K L ++ + +F+L IL +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCK-IL-L 270
Query: 1128 TAKDK--------KTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 1179
T + K T S+ S L+ E++++ L LD + ++L E
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSL-----LLKYLDCRPQDL---PRE 321
Query: 1180 ADST----ISIVKKNLKD-----ENTKITDEEK--ESIEKSISNLE 1214
+T +SI+ ++++D +N K + +K IE S++ LE
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 85/685 (12%), Positives = 193/685 (28%), Gaps = 223/685 (32%)
Query: 232 DFDM--------RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI- 282
DF+ I++ F + K+ + K LS E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFD--------CKDVQDMPKSILSKEEIDHII 55
Query: 283 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVG 342
+G L SK E +V+ + + L+ + K S I
Sbjct: 56 MSK---DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRI------NYKFLMSPIKT----- 100
Query: 343 GQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLL-LDVTPLTLG 401
+ R P M++ + ++ + N D V +V ++ LL L +
Sbjct: 101 -EQRQP---SMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VL 154
Query: 402 IETMGG----VMTPLIEKNTTIPTRKT-QVF--STAEDNQTSVTIHTLQGERKKASQNKS 454
I+ + G + + + + + ++F + N + LQ + N +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 455 LGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIE 514
+D S + +I L K K E +++ L ++
Sbjct: 215 ----SRSDHSSNIK--LRIH-----SIQAELRRLLKSKP--YENCLLV-----LLNVQ-- 254
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVI 574
N++ F + CK I++ T+ + D I +
Sbjct: 255 --------NAKAWNAFN--LSCK---ILLT----------TRFKQVTDFLSAATTTHISL 291
Query: 575 ENIIIELIPITDSMEMFAKNFDSNQTKESE--------IIFLIFKLIK------KFYKKF 620
++ + L P + + K D + +I + I+ +K
Sbjct: 292 DHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 621 NIKQISET-----GVLFNPDIH----EAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIE-- 669
N +++ VL P + + + ++P + ++
Sbjct: 351 NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFP-----PSA---------HIPTILLSLI 395
Query: 670 --NSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI----------------- 710
+ ++ ++ L P + +I
Sbjct: 396 WFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 711 -KRLIG-----RKY-TDEIVQKDIKM-----VPYKIVAADNGD------------AWVEV 746
+ ++ + + +D+++ + + + + ++ + ++E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 747 K-----DQYCAPPQISAEI--LKKMK--------------STAETFLNEKIEKAVITVP- 784
K + A I + LK K + FL KIE+ +I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKY 564
Query: 785 -------------AYFNDSQRQATK 796
A F ++ +Q +
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 85/628 (13%), Positives = 187/628 (29%), Gaps = 198/628 (31%)
Query: 458 FDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMI 517
FD D+ P+ + LS+ EI+++I
Sbjct: 33 FDCKDVQDMPKSI-------------------------------------LSKEEIDHII 55
Query: 518 KDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYD--EDKIR---KLKEI 572
+ S + F L+ K E+++ +KF +E +Y I+ + +
Sbjct: 56 MSKDAVSGTLRLFWTLLS-KQEEMV---QKF----VEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 573 VIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNI---------K 623
+ I + + + ++FAK N ++ + L L + N+ K
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGK 163
Query: 624 QISETGVLFNPDIHEAI--GIY-PTFGKKKGTTNSCVAVLNN----GKPQVIENSEGGRT 676
V + + + I+ + + + +L P S+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 677 TPSVV--GYTEDNRIIVGLPAKRQAIT-----NPNNTLYAI----KRLI---GRKYTDEI 722
+ E R++ P + + N A K L+ ++ TD +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 723 ---VQKDIKMVPYKIV-AADNGDA----WVEVKDQYCAPPQ--------IS--AEILKKM 764
I + + + D + +++ + Q P + +S AE ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDG 340
Query: 765 KSTAETFLNEKIEKAVITVPAYFN----DSQRQATKDAG------KI--AGLEVL----- 807
+T + + + +K + + N R+ I L ++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 808 -----RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE---V 859
++N+ +L ++K+P + I + + ++ ++ E V
Sbjct: 401 KSDVMVVVNKLHKYSL---VEKQPKESTISIPSI---YLELK----VKLENEYALHRSIV 450
Query: 860 LSTNGDTFLGGEDF-----DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE------ 908
N +D D +H+ + K ++ +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK------------NIEHPERMTLFRMVFL 498
Query: 909 -----KAKIELS----NAEQTDINL--------PYITADKNGPKHLNVKITRSKLESLVE 951
+ KI NA + +N PYI N PK+ E LV
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKY----------ERLVN 546
Query: 952 DLISKSLKPCEVALNDAKIDKSKISEII 979
++ L E + SK ++++
Sbjct: 547 AIL-DFLPKIE-----ENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-12
Identities = 115/789 (14%), Positives = 233/789 (29%), Gaps = 251/789 (31%)
Query: 457 KFDLNDISPAPRGVPQIEVSF--DLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIE 514
++ DI + E +F + D + ++ +SI LS+ EI+
Sbjct: 15 QYQYKDI------LSVFEDAFVDNFDCKDVQDMP---------KSI-------LSKEEID 52
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYD--EDKIR---KL 569
++I + S + F L+ K E+++ +KF +E +Y I+ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLS-KQEEMV---QKF----VEEVLRINYKFLMSPIKTEQRQ 104
Query: 570 KEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQISETG 629
++ I + + + ++FAK N ++ + KL + +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYL----KLRQALLE-----LRPAKN 152
Query: 630 VLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRI 689
VL I +G GK + VA+ V ++
Sbjct: 153 VL----IDGVLG----SGK------TWVAL-------------------DVC---LSYKV 176
Query: 690 IVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQ 749
+ ++ + + + E V + ++ + Y+I W D
Sbjct: 177 Q----------CKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDH 219
Query: 750 YCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRI 809
I +++ L K Y N L VL
Sbjct: 220 SSNIKLRIHSIQAELR----RLLKSK---------PYEN--------------CLLVLLN 252
Query: 810 INEP-TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL 868
+ A +I++ T V + + T L + T
Sbjct: 253 VQNAKAWNAFNLSC------KILLT------TRFKQVTDFLSAATTTHI-SLDHHSMTLT 299
Query: 869 GGEDFDM--RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPY 926
E + + ++ + E L+ + L AE + L+ + N +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE---VLTTNPRR---LSIIAESIRDGLATWD----NWKH 349
Query: 927 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986
+ DK L I S L L K V A I + + +I
Sbjct: 350 VNCDK-----LTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKS 402
Query: 987 MPLVQKMVSEFFEKE-VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETM 1045
V +V++ + V+K P E +S + + L++
Sbjct: 403 --DVMVVVNKLHKYSLVEKQ--PKE----------STIS--IPS-IYLEL---------- 435
Query: 1046 GGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISP 1105
K ++ +N+ + +H R FD +D+ P
Sbjct: 436 -----------------KVKL-----ENEYA--LH-----RSIVDHYNIPKTFDSDDLIP 466
Query: 1106 AP-------------RGVPQIEVSFDLDANGILN---VTAKDKKTGKEQSIIIKSSGGLS 1149
+ + E L L+ + K + + L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1150 EIEI-ENMIKDAE------LNSELD--KKFEE-LVKCKNEADSTISIVKKNLKDENTKIT 1199
+++ + I D + +N+ LD K EE L+ K D +++ L E+ I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTD----LLRIALMAEDEAIF 580
Query: 1200 DEEKESIEK 1208
+E + +++
Sbjct: 581 EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 4e-09
Identities = 58/387 (14%), Positives = 114/387 (29%), Gaps = 134/387 (34%)
Query: 3 CKIIGIDLGTTNSCVA-VLNNGKPQVIENSEGGRTTPSVVGYTED----------NRIIV 51
CKI+ L T V L+ I + T D +
Sbjct: 266 CKIL---LTTRFKQVTDFLSAATTTHISLDH------HSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 52 GLPAKRQAI-TNPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKK 110
LP R+ + TNP + +I D + D W V K
Sbjct: 317 DLP--REVLTTNP----RRLS-IIAESIRDGLATW---------------DNWKHVNCDK 354
Query: 111 LAPP-QISAEILK--KMKSTAETFL----NEKIEKAVITVPAYFNDSQRQATKDAGKIAG 163
L + S +L+ + + + + I ++++ + D +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKS---------- 402
Query: 164 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE---VL 220
+V+ ++N+ +L ++K+P + I + + ++ ++ E V
Sbjct: 403 -DVMVVVNKLHKYSL---VEKQPKESTISIPSI---YLELK----VKLENEYALHRSIVD 451
Query: 221 STNGDTFLGGEDF-----DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE------- 268
N +D D +H+ + K ++ +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK------------NIEHPERMTLFRMVFLD 499
Query: 269 ----KAKIELS----NAEQTDINL--------PYITADKNGPKHLNVKITRSKLESLVED 312
+ KI NA + +N PYI N PK+ E LV
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKY----------ERLVNA 547
Query: 313 LISKSLKPCEVALNDAKIDKSKISEII 339
++ L E + SK ++++
Sbjct: 548 IL-DFLPKIE-----ENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 6e-07
Identities = 84/564 (14%), Positives = 165/564 (29%), Gaps = 149/564 (26%)
Query: 46 DNRIIVGLPAKR-QAITNPNNTLYAIKRLIGRKYTDEIV--------QTVL-KMV--PYK 93
DN++ R Q L ++ ++ +T + V YK
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYK 175
Query: 94 IVAA-DNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ- 151
+ D W+ +K+ P+ E+L+K+ + + + + + + Q
Sbjct: 176 VQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQA 232
Query: 152 --RQATKDAGKIAGLEVLRIINEP-TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI 208
R+ K L VL + A +I++ T V +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------KILLT------TRFKQVTDF 280
Query: 209 ANVDGETQFEVLSTNGDTFLGGEDFDM--RIINHLIYEFKIENGVDLSGDSLAMQRLKEA 266
+ T L + T E + + ++ + E L+ + L
Sbjct: 281 LSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRR---LSII 333
Query: 267 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALN 326
AE + L+ + N ++ DK L I S L L K V
Sbjct: 334 AESIRDGLATWD----NWKHVNCDK-----LTTIIESS-LNVLEPAEYRKMFDRLSVFPP 383
Query: 327 DAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE-VKKDINPDEAVAVGASVQAGVLSG 385
A I + + +I V +V++ + V+K P E +S
Sbjct: 384 SAHI-PTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQ--PKE----------STIS- 427
Query: 386 VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGE 445
+ + L++ K ++ +N+ + +H
Sbjct: 428 -IPS-IYLEL---------------------------KVKL-----ENEYA--LH----- 446
Query: 446 RKKASQNKSLGKFDLNDISPAP-------------RGVPQIEVSFDLDANGILN---VTA 489
R FD +D+ P + + E L L+ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQ 505
Query: 490 KDKKTGKEQSIIIKSSGGLSEIEI-ENMIKDAELNSELDKKFEELVKC------KNEQII 542
K + + L +++ + I D D K+E LV K E+ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDN------DPKYERLVNAILDFLPKIEENL 559
Query: 543 ILEEKFCSFV---LETKKETDYDE 563
I K+ + L + E ++E
Sbjct: 560 I-CSKYTDLLRIALMAEDEAIFEE 582
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 53/391 (13%), Positives = 111/391 (28%), Gaps = 85/391 (21%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
++ +D G V N + VI PS +G + +
Sbjct: 5 YVMALDFGNGF--VKGKINDEKFVI---------PSRIGRKTNENNQLKGFVDN----KL 49
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
+ + + I + + N + + +
Sbjct: 50 DVSEFIINGNNDEVL----------LFGNDLDKTTNTGKDTASTNDRYDIKSFKDLVECS 99
Query: 124 MKSTAETFLNEKIEKAVIT---VPAYFNDSQRQATKDAGKIAGLEV-----------LRI 169
+ A E + + T D Q + K K +E+ ++I
Sbjct: 100 IGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 170 INEPTAAALAYGLDKKPDDRI-----IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 224
+ +P L ++ + V D G GT I + E F +
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVIN---- 215
Query: 225 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINL 284
G DF RI +H+ + + G S+ + +++ E + +L+ D
Sbjct: 216 ---KGTIDFYKRIASHVSKKSE--------GASITPRMIEKGLEYKQCKLNQKTVIDFK- 263
Query: 285 PYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ 344
+ +SL+E+++S + + I II+ GG
Sbjct: 264 ---------------DEFYKEQDSLIEEVMS--------NFEITVGNINSIDRIIVTGGG 300
Query: 345 TRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 375
+ +S ++ +K + + G
Sbjct: 301 AN--IHFDSLSHYYSDVFEKADDSQFSNVRG 329
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 65/341 (19%)
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISA 758
I N +K + K + + D KD +
Sbjct: 30 RIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDI 89
Query: 759 EILKKMKSTAETFLNEKIEKA------VITVPAYFNDSQRQATK-------------DAG 799
+ K + + L ++ + +P+ + +QA
Sbjct: 90 KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIA 149
Query: 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRI-----IVVYDLGGGTFDISVIEIANVDGE 854
K ++ ++I+ +P L ++ + V D G GT I + E
Sbjct: 150 KTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEE 209
Query: 855 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIEL 914
F + G DF RI +H+ + + G S+ + +++ E + +L
Sbjct: 210 ESFVIN-------KGTIDFYKRIASHVSKKSE--------GASITPRMIEKGLEYKQCKL 254
Query: 915 SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK 974
+ D + +SL+E+++S + +
Sbjct: 255 NQKTVIDFK----------------DEFYKEQDSLIEEVMS--------NFEITVGNINS 290
Query: 975 ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015
I II+ GG + +S ++ +K + + G
Sbjct: 291 IDRIIVTGGGAN--IHFDSLSHYYSDVFEKADDSQFSNVRG 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 33/250 (13%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 140 VITVPA--YFNDSQRQATKDA------------GKIAGLEVLRIINEPTAAALAYGLDKK 185
V+ P N ++ +D K E+ I + + + + +
Sbjct: 109 VLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQEN 168
Query: 186 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 245
++ + V D GG S+ + G +D +R+ +
Sbjct: 169 FKNKNVAVIDFGGLNMGFSLYR----NCVVNPSERFIEE---HGVKDLIIRVGD----AL 217
Query: 246 KIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSK 305
N +L + A L K E+ T I +
Sbjct: 218 TDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------------------KKV 257
Query: 306 LESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD 365
E ++D I + ++ +I +GG T+ +++ +S+ +
Sbjct: 258 KEKFLKDAIKL--------IEKRGFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIIT 307
Query: 366 INPDEAVAVG 375
N G
Sbjct: 308 NNSQWTTCEG 317
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 33/250 (13%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 780 VITVPA--YFNDSQRQATKDA------------GKIAGLEVLRIINEPTAAALAYGLDKK 825
V+ P N ++ +D K E+ I + + + + +
Sbjct: 109 VLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQEN 168
Query: 826 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 885
++ + V D GG S+ + G +D +R+ +
Sbjct: 169 FKNKNVAVIDFGGLNMGFSLYR----NCVVNPSERFIEE---HGVKDLIIRVGD----AL 217
Query: 886 KIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSK 945
N +L + A L K E+ T I +
Sbjct: 218 TDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------------------KKV 257
Query: 946 LESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD 1005
E ++D I + ++ +I +GG T+ +++ +S+ +
Sbjct: 258 KEKFLKDAIKL--------IEKRGFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIIT 307
Query: 1006 INPDEAVAVG 1015
N G
Sbjct: 308 NNSQWTTCEG 317
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 54/389 (13%), Positives = 128/389 (32%), Gaps = 67/389 (17%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+ +G+++G + + ++ P + + R TP ++ + P
Sbjct: 14 EALGLEIGASALKLVEVSGNPPAL--KALASRPTPP--------GLL-----MEGMVAEP 58
Query: 64 NNTLYAIKRLI---GRKYTDEIV-----QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQ 115
IK L+ + + +L+ + + + V + ++ P
Sbjct: 59 AALAQEIKELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFP 118
Query: 116 ISAEIL--KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEP 173
I +L + +E E+++ V +A + AGL + + +P
Sbjct: 119 IDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRG----AGLVPVVLDVKP 174
Query: 174 TAAALAYG-LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
A + DR+ +V D+G + + ++ + L G+D
Sbjct: 175 FAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR----GDKPLA-----VRVLTLSGKD 225
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKN 292
F I + AAE+ K A + +
Sbjct: 226 FTEAIARSFNLDL-------------------LAAEEVKRTYGMATLPTEDEELLLDFDA 266
Query: 293 GPKHLNVKITRSKLESLVEDL---ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 349
+ + + ++ +L + +SL+ + L +A + L+GG +++
Sbjct: 267 ERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEV-----GYLLGGGSKLRG 321
Query: 350 VQKMVSEFFEKEVKKDINPDEAVAVGASV 378
+ ++++ ++ +NP EAVAV
Sbjct: 322 LASLLTDTLGVNLEP-VNPWEAVAVDPKR 349
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 36/230 (15%), Positives = 79/230 (34%), Gaps = 38/230 (16%)
Query: 793 QATKDAGKIAGLEVLRIINEPTAAALAYG-LDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
+A + AGL + + +P A + DR+ +V D+G + + ++
Sbjct: 154 AGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR---- 209
Query: 852 DGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAK 911
+ L G+DF I + AAE+ K
Sbjct: 210 GDKPLA-----VRVLTLSGKDFTEAIARSFNLDL-------------------LAAEEVK 245
Query: 912 IELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDL---ISKSLKPCEVALNDA 968
A + + + + + ++ +L + +SL+ + L +A
Sbjct: 246 RTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEA 305
Query: 969 KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018
+ L+GG +++ + ++++ ++ +NP EAVAV
Sbjct: 306 SPEV-----GYLLGGGSKLRGLASLLTDTLGVNLEP-VNPWEAVAVDPKR 349
|
| >1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Length = 197 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 15/174 (8%)
Query: 488 TAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEK 547
++K++KT + Q+ EIE AE D+K L E +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 548 FCSFVLETKKETD-----YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKE 602
L K E + + D K + +E I EL+P+ DS++ A +
Sbjct: 62 I----LRVKAEMENLRRRTELDI-EKAHKFALEKFINELLPVIDSLDR-ALEVADKANPD 115
Query: 603 SEIIF----LIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGT 652
+ L K + +KF ++ I+ET V +P++H+AI + + G
Sbjct: 116 MSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGN 169
|
| >3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Length = 177 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLET---KKETDYDEDKI 566
+ KD E + + EE +K E++ L++K+ + + +K + +
Sbjct: 4 RNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAR 63
Query: 567 RKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQIS 626
+ + + L+P+ D ++ + +++ + + I + ++++
Sbjct: 64 ER---EGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVP 120
Query: 627 ETGVLFNPDIHEAIGIYPT 645
G F+P HEA+G+ P
Sbjct: 121 GEGEAFDPRYHEAVGLLPG 139
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 82/281 (29%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V + GK V+ +E PSV+ + I+ VGL AK
Sbjct: 6 IGIDLGTANTLVFL--RGKGIVV--NE-----PSVIAIDSTTGEILKVGLEAKN------ 50
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV---KDKKLAPPQISAEI 120
+IG+ P I A + +D +A ++ +
Sbjct: 51 ---------MIGK-------------TPATIKA---------IRPMRDGVIADYTVALVM 79
Query: 121 LK---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
L+ ++ VI VP D +R+A DAG AG + +I EP AAA
Sbjct: 80 LRYFINKAKGGMNLFKPRV---VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAA 136
Query: 178 LAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236
+ L+ ++P ++V D+GGGT +++VI + ++ V + + G++ D
Sbjct: 137 IGSNLNVEEPSGNMVV--DIGGGTTEVAVISLGSI-------VTWES--IRIAGDEMDEA 185
Query: 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
I+ ++ +++ G+ AE+ KIE+ N
Sbjct: 186 IVQYVRETYRV-----AIGER--------TAERVKIEIGNV 213
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 25/139 (17%)
Query: 780 VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGG 838
VI VP D +R+A DAG AG + +I EP AAA+ L+ ++P ++V D+GG
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV--DIGG 156
Query: 839 GTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSL 898
GT +++VI + ++ V + + G++ D I+ ++ +++ G+
Sbjct: 157 GTTEVAVISLGSI-------VTWES--IRIAGDEMDEAIVQYVRETYRV-----AIGER- 201
Query: 899 AMQRLKEAAEKAKIELSNA 917
AE+ KIE+ N
Sbjct: 202 -------TAERVKIEIGNV 213
|
| >4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 27/172 (15%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 488 TAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEK 547
A + + + ++ +GG E AE + + EL ++ +E +
Sbjct: 26 EAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAEL----EAKLSEMEHR 81
Query: 548 FCSFVLETKKETD-----YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKE 602
+ L + + ++ ++ +++ +L+P+ D+ E K N+ +
Sbjct: 82 Y----LRLYADFENFRRRTRQEM-EAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAK 136
Query: 603 S--EIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGT 652
S + + ++++ + KK ++ I G F+P +H+A+ G + T
Sbjct: 137 SILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNT 188
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 287 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346
+T ++L R+ +E + S + C + I+ I+L+GG +
Sbjct: 389 MTLANTTRENL----ARAFVEG-----LLCSQRDCLELIRSLGA---SITRILLIGGGAK 436
Query: 347 MPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
++ + +V + DE VA+GA+ QA + +
Sbjct: 437 SEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAWVLSGETE 478
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 927 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986
+T ++L R+ +E + S + C + I+ I+L+GG +
Sbjct: 389 MTLANTTRENL----ARAFVEG-----LLCSQRDCLELIRSLGA---SITRILLIGGGAK 436
Query: 987 MPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
++ + +V + DE VA+GA+ QA + +
Sbjct: 437 SEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAWVLSGETE 478
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 278 EQTDINLPYITA------DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID 331
E+T N P ++GP L R+ LE + +L ++ I
Sbjct: 336 ERTPHNNPQAKGVFFGLTHQHGPNEL----ARAVLEG-----VGYALADGMDVVHACGI- 385
Query: 332 KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
K + L+GG R ++M+++ +++ D A+GA+ A + + K +
Sbjct: 386 --KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSL 442
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 918 EQTDINLPYITA------DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID 971
E+T N P ++GP L R+ LE + +L ++ I
Sbjct: 336 ERTPHNNPQAKGVFFGLTHQHGPNEL----ARAVLEG-----VGYALADGMDVVHACGI- 385
Query: 972 KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
K + L+GG R ++M+++ +++ D A+GA+ A + + K +
Sbjct: 386 --KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSL 442
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 330 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
+ K+ + +VGG R +M+++ + + G + A V
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHS 457
Query: 390 V 390
+
Sbjct: 458 I 458
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 970 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
+ K+ + +VGG R +M+++ + + G + A V
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHS 457
Query: 1030 V 1030
+
Sbjct: 458 I 458
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1242 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.97 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.96 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.96 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.96 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.96 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.96 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.95 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.95 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.95 | |
| 4ani_A | 213 | Protein GRPE; chaperone cycle, complementary assay | 99.94 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.94 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.94 | |
| 1dkg_A | 197 | Nucleotide exchange factor GRPE; HSP70, GRPE, nucl | 99.93 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.93 | |
| 3a6m_A | 177 | Protein GRPE, HSP-70 cofactor; coiled-coil, four-h | 99.93 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.93 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.92 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.92 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.91 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.91 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.9 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.9 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.89 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.88 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.87 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.87 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.86 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.86 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.84 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.84 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.75 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.74 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.7 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.64 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.62 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.51 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.49 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.48 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.47 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.46 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.3 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.26 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.24 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.15 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.02 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.0 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.88 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.87 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.87 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 98.78 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 98.55 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.48 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 98.39 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.91 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.85 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.8 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 97.03 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 96.92 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 96.6 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 96.57 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 96.55 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.34 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 96.25 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.1 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.98 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 95.67 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.59 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.56 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.53 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.47 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.44 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.42 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 95.34 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 95.28 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.25 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.23 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 95.18 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.09 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.01 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 94.99 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 94.88 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 94.8 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 94.69 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 94.66 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 94.5 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 94.4 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 94.35 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 94.34 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 94.3 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 94.27 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 94.16 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 94.14 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 94.12 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 94.1 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 94.09 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 94.06 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 93.93 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 93.75 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 93.65 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 93.65 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 93.56 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 93.11 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 93.03 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 92.31 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 91.91 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 91.4 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 91.36 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 91.28 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 91.11 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 90.73 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 88.95 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 85.7 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 80.63 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 80.16 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-99 Score=932.33 Aligned_cols=601 Identities=65% Similarity=1.003 Sum_probs=581.8
Q ss_pred ccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCCh
Q psy5911 642 IYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 721 (1242)
Q Consensus 642 ~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~ 721 (1242)
|..++|||+||++|++++++.|.++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++|||||+.++++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 34578999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 722 IVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 801 (1242)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~ 801 (1242)
.++...+.+||.++..+++.+.+.+.++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++|++.
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~ 160 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHH
Q psy5911 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 881 (1242)
Q Consensus 802 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 881 (1242)
|||+++++++||+|||++|+......+..++|||+||||||+|++++....+.+.++++++.|+.+|||++||+.|++|+
T Consensus 161 AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l 240 (605)
T 4b9q_A 161 AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (605)
T ss_dssp TTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHH
Confidence 99999999999999999999887666789999999999999999999887777899999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 882 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 961 (1242)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i 961 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++++..+..++.++.++|||++|+++++|+++++..++
T Consensus 241 ~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v 320 (605)
T 4b9q_A 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPL 320 (605)
T ss_dssp HHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999888777777889999999999999999999999999
Q ss_pred HHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceee
Q psy5911 962 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 1041 (1242)
Q Consensus 962 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~g 1041 (1242)
+++|+++++...+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++..+++.+.|++|++||
T Consensus 321 ~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~slg 400 (605)
T 4b9q_A 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLG 400 (605)
T ss_dssp HHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSCEE
T ss_pred HHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcC
Q psy5911 1042 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 1121 (1242)
Q Consensus 1042 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 1121 (1242)
+++.+|.|.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|.++||.|+|.++|+|+|++|.
T Consensus 401 ie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 480 (605)
T 4b9q_A 401 IETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480 (605)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECT
T ss_pred EEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHH
Q psy5911 1122 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDE 1201 (1242)
Q Consensus 1122 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~ 1201 (1242)
||+|+|++.++.||++.+++|.++.+||++|+++|++++++++++|+..+++.+++|+||+|+|++++.|+++..+++++
T Consensus 481 ~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~ 560 (605)
T 4b9q_A 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 560 (605)
T ss_dssp TSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred CcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1202 EKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1202 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
+|+++..+++++++||++++.++|++++++|+..+.+++.+
T Consensus 561 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 4b9q_A 561 DKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999863
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-96 Score=905.75 Aligned_cols=600 Identities=65% Similarity=1.010 Sum_probs=571.1
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|||+||++|+++++++|.++++.|+.|.+.+||+|+|.++++++||..|+.+...+|.++++++||+||+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp --CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 34789999999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
++...+.+||.++...++.+.+.++++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++|++.|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~A 161 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999988889999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
||+++++++||+|||++|+......+..+||||+||||||+|++++....+.+.++++++.|+.++||++||+.|++|+.
T Consensus 162 Gl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 2kho_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHH
T ss_pred CCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999998765457889999999999999999998433348899999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.+|+.++.++|||++|+++++|+++++..+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 321 (605)
T 2kho_A 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999889999987776544446678899999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
++|+++++...+|+.|+||||+||+|+|++.|++.||.++..+.||++|||+|||++|+.+++..+++.+.|++|++||+
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~slgi 401 (605)
T 2kho_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI 401 (605)
T ss_dssp HHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCEEE
T ss_pred HHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeeccc
Confidence 99999999989999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.+|.|.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|+++||.|+|.++|+|+|++|.|
T Consensus 402 ~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 481 (605)
T 2kho_A 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD 481 (605)
T ss_dssp EETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTT
T ss_pred cccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEE 1202 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~ 1202 (1242)
|+|+|++.++.||++.+++|+.+.+||++|+++|+++++++.++|+..+++.+++|+||+|+|++++.|+++..++++++
T Consensus 482 gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~ 561 (605)
T 2kho_A 482 GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADD 561 (605)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred CceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1203 KESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1203 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
|+++..+++++++||++++.++|++++++|++.+.+++.|
T Consensus 562 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 2kho_A 562 KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999889999999999999999999864
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-93 Score=881.96 Aligned_cols=543 Identities=70% Similarity=1.069 Sum_probs=525.6
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.|||||||||||+||++.+|.+++++|..|++.+||+|+|.+++.++||..|+.+...+|.++++++||+||++++++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 78899999999999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.++...+.+||.++...++.+.+.+.++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++|++.
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~ 160 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||+++++++||+|||++|+......+.++||||+||||||+|++++....+.+.++++++.|+.+|||++||++|++|+
T Consensus 161 AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l 240 (605)
T 4b9q_A 161 AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (605)
T ss_dssp TTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHH
Confidence 99999999999999999999887667889999999999999999999887777899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
..+|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++.++|||++|+++++|+++++..++
T Consensus 241 ~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v 320 (605)
T 4b9q_A 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPL 320 (605)
T ss_dssp HHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776677889999999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|+++++...+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++..+++++.|++|+|||
T Consensus 321 ~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~slg 400 (605)
T 4b9q_A 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLG 400 (605)
T ss_dssp HHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSCEE
T ss_pred HHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.+|.|.+|||||++||++++++|++..|||+.+.|++|||++.++.+|..||+|.|.++||+|+|.++|+|+|++|.
T Consensus 401 ie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 480 (605)
T 4b9q_A 401 IETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480 (605)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECT
T ss_pred EEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
||+|+|++.++.||++.+++|.++.+|+++++++|++++++++++|+..+++.+++|+++.++
T Consensus 481 ~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~ 543 (605)
T 4b9q_A 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLL 543 (605)
T ss_dssp TSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998999999999999999999999999999999999997765
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-92 Score=874.13 Aligned_cols=587 Identities=25% Similarity=0.400 Sum_probs=546.6
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
.++|||+||+||++++++.|.++++.|+.|++.+||+|+|.++ .++||..|+.+...+|.++++++|||||+.++++.+
T Consensus 3 ~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 81 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDF 81 (675)
T ss_dssp CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTH
T ss_pred cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHH
Confidence 4789999999999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred HhhcccCceEEEEcCCCCeEEEEc--C--eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVK--D--QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
+...+++||.++...+|.+.+.+. + +.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++|+
T Consensus 82 ~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 161 (675)
T 3d2f_A 82 EQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161 (675)
T ss_dssp HHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999888888887664 4 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCCC------CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 873 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~------~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~ 873 (1242)
+.|||+++++++||+|||++|+..+. ..+.++||||+||||||+|++++.+ +.++++++.|+.++||++|
T Consensus 162 ~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~----g~~~V~a~~gd~~lGG~d~ 237 (675)
T 3d2f_A 162 RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK----GQLKVLGTACDKHFGGRDF 237 (675)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHH
T ss_pred HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecC----CeEEEEEEcCCCCccHHHH
Confidence 99999999999999999999987542 3568899999999999999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHH
Q psy5911 874 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDL 953 (1242)
Q Consensus 874 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~ 953 (1242)
|+.|++|+..+|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++.++|||++|++++.|+
T Consensus 238 D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~~l 313 (675)
T 3d2f_A 238 DLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVKPL 313 (675)
T ss_dssp HHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHHHH
Confidence 999999999999999999988999999999999999999999988888888876543 3588999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhccc--ccceE
Q psy5911 954 ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVL 1031 (1242)
Q Consensus 954 ~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~--~~~~~ 1031 (1242)
++++..+++++|+++++++.+|+.|+||||+||+|+|++.|++.||.++..+.||++|||+|||++|+.+++. .+++.
T Consensus 314 ~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~ 393 (675)
T 3d2f_A 314 LERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFK 393 (675)
T ss_dssp HTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCE
T ss_pred HHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 67899
Q ss_pred EeecccceeeEEEeCc----eEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccc-cCcceeeEEecCCCCC
Q psy5911 1032 LLDVTPLTLGIETMGG----VMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKAS-QNKSLGKFDLNDISPA 1106 (1242)
Q Consensus 1032 ~~~~~~~~~gi~~~~~----~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~-~n~~lg~~~l~~~~~~ 1106 (1242)
+.|++|+|||+++.++ .+.++||||++||++++++|++..+++ +.+. |+|++.++. +|..||+|.|.|+||.
T Consensus 394 l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~ 470 (675)
T 3d2f_A 394 FEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLP 470 (675)
T ss_dssp EEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCC
T ss_pred EEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCC
Confidence 9999999999999877 499999999999999999999887654 3333 789999887 9999999999999999
Q ss_pred CCCcC-EEEEEEEEcCCeeEEEEEE----------ecCCCceEEEEEccCC-CCCHHHHHHHHHHHHhhhHhhHhhHHHH
Q psy5911 1107 PRGVP-QIEVSFDLDANGILNVTAK----------DKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELV 1174 (1242)
Q Consensus 1107 ~~g~~-~i~v~~~~d~~g~l~v~~~----------~~~~~~~~~~~i~~~~-~l~~~e~~~~~~~~~~~~~~d~~~~~~~ 1174 (1242)
|.|.+ +|+|+|++|.||+|+|++. ++.||++.+++|..+. +||++|+++|+++++++.++|+..+++.
T Consensus 471 ~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ 550 (675)
T 3d2f_A 471 EGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETE 550 (675)
T ss_dssp SSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99975 9999999999999999995 7899999999998765 8999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHhhhh-ccCCCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1175 KCKNEADSTISIVKKNLKD-ENTKITDEEKESIEKSISNLELLIKGD----DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1175 ~~~n~le~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
+++|+||+|+|++|+.|++ +..++++++++++...|+++++||+++ +.++|++++++|++.+.||+.|
T Consensus 551 ~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r 623 (675)
T 3d2f_A 551 DRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGR 623 (675)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999965 778999999999999999999999864 3789999999999999999864
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-91 Score=855.63 Aligned_cols=543 Identities=70% Similarity=1.076 Sum_probs=514.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.+||||||||||+||++.+|.+++++|+.|.+.+||+|+|..+++++||+.|+.+...+|.++++++||+||+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~ 80 (605)
T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp ---CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSST
T ss_pred CCCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcH
Confidence 67899999999999999999999999999999999999999987788999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.++...+.+||.++...++.+.+.++++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|++.
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~ 160 (605)
T 2kho_A 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (605)
T ss_dssp THHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999998888899999998899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
|||+++++++||+|||++|+.+....+..+||||+||||||+|++++....+.+.++++++.|+.+|||++||+.|++|+
T Consensus 161 AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l 240 (605)
T 2kho_A 161 AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (605)
T ss_dssp TTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHH
T ss_pred cCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999876546788999999999999999999843334889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..|+.++.++|||++|+++++|+++++..+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i 320 (605)
T 2kho_A 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPL 320 (605)
T ss_dssp HHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999998776654444677889999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|+++++...+|+.|+||||+|++|+|+++|++.||.++..+.||++|||+|||++|+.+++..+++++.|++|++||
T Consensus 321 ~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~slg 400 (605)
T 2kho_A 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLG 400 (605)
T ss_dssp HHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCEE
T ss_pred HHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeecc
Confidence 99999999998999999999999999999999999999999999999999999999999999987788999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.+|.|.+|||||++||++++++|++..|+|+.+.|++|||++.++.+|..||+|.|.++||.|+|.++|+|+|++|.
T Consensus 401 i~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 480 (605)
T 2kho_A 401 IETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480 (605)
T ss_dssp EEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECT
T ss_pred ccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
||+|+|++.++.||++.+++|+.+.+|+++++++|++++++++++|+..+++.+++|++++++
T Consensus 481 ~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~ 543 (605)
T 2kho_A 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLL 543 (605)
T ss_dssp TSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999999999999999999999999997775
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-86 Score=817.49 Aligned_cols=531 Identities=26% Similarity=0.422 Sum_probs=493.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|..+||||||||||+||++.+|.++++.|+.|++.+||+|+|.++ .++||..|+.+...+|.++++++||+||++++++
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 79 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHP 79 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCT
T ss_pred CCcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcH
Confidence 556999999999999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEc--C--eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVK--D--KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
.++...+++||.++...++.+.+.+. + +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 80 ~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 159 (675)
T 3d2f_A 80 DFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIAD 159 (675)
T ss_dssp THHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999888888877664 3 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCC------CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 231 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~------~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 231 (1242)
|++.|||+++++++||+|||++|+..+. ..+.++||||+||||||+|++++.+ +.++++++.|+.+|||+
T Consensus 160 Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~----g~~~V~a~~gd~~lGG~ 235 (675)
T 3d2f_A 160 AARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK----GQLKVLGTACDKHFGGR 235 (675)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHH
T ss_pred HHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecC----CeEEEEEEcCCCCccHH
Confidence 9999999999999999999999987542 3578899999999999999999987 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHH
Q psy5911 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVE 311 (1242)
Q Consensus 232 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~ 311 (1242)
+||++|++|+..+|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|++++.
T Consensus 236 d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~ 311 (675)
T 3d2f_A 236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVK 311 (675)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHH
Confidence 99999999999999999999988999999999999999999999988888888876543 46889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCC--ccc
Q psy5911 312 DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKD 389 (1242)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~--~~~ 389 (1242)
|+++++..+++++|+.++++..+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++. .++
T Consensus 312 ~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~ 391 (675)
T 3d2f_A 312 PLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP 391 (675)
T ss_dssp HHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 678
Q ss_pred eEEEeeccceeEEEeeCC----eeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCccccc-CCcceeEEEecCCC
Q psy5911 390 VLLLDVTPLTLGIETMGG----VMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKAS-QNKSLGKFDLNDIS 464 (1242)
Q Consensus 390 ~~~~d~~~~sigi~~~~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~-~~~~lg~~~i~~~~ 464 (1242)
+.+.|++|+|||+++.++ .+.+|||||++||++++++|++..++| +.+. |+|++.++. +|..||+|.|+++|
T Consensus 392 ~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~ 468 (675)
T 3d2f_A 392 FKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQ 468 (675)
T ss_dssp CEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCC
T ss_pred eEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcC
Confidence 999999999999999877 499999999999999999999876654 3333 779999887 99999999999999
Q ss_pred CCCCCcC-EEEEEEEecCCeeEEEEEE----------EcCCCcEEEEEEecCC-CCchHHHHHHHHHHHhhchhhhhHHH
Q psy5911 465 PAPRGVP-QIEVSFDLDANGILNVTAK----------DKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEE 532 (1242)
Q Consensus 465 ~~~~g~~-~i~v~~~~d~~g~l~v~~~----------~~~~~~~~~~~i~~~~-~l~~eei~~~~~~~~~~~~~d~~~~e 532 (1242)
|.|+|.+ +|+|+|++|.||+|+|++. ++.+|++.+++|..+. +|+++++++|++++++++++|+..++
T Consensus 469 ~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~ 548 (675)
T 3d2f_A 469 LPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAE 548 (675)
T ss_dssp CCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999985 9999999999999999995 7899999999998764 89999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy5911 533 LVKCKNEQIIIL 544 (1242)
Q Consensus 533 ~~e~~~~~~~~~ 544 (1242)
+.+++|++++++
T Consensus 549 ~~~~~n~le~~i 560 (675)
T 3d2f_A 549 TEDRKNTLEEYI 560 (675)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997765
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-86 Score=808.48 Aligned_cols=530 Identities=54% Similarity=0.837 Sum_probs=497.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.++ .++||+.|+.+...+|.++++++||+||++++++
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 81 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDA 81 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCS
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcH
Confidence 567999999999999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEc--C--eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVK--D--KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~ 157 (1242)
.++...+.+||.++. .++.+.+.+. + +.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 82 ~v~~~~~~~p~~v~~-~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 82 VVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEe-cCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 999999999999884 3666666553 3 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechHHHHHHHhccCCC-CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 158 AGKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 158 Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
|++.||++++++++||+|||++|+.... ..+..+||||+||||||+|++++.+ +.++++++.|+.++||++||++
T Consensus 161 A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~----g~~~v~a~~g~~~lGG~d~d~~ 236 (554)
T 1yuw_A 161 AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAA----GIFEVKSTAGDTHLGGEDFDNR 236 (554)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcC----CcEEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999998765 2578899999999999999999986 7899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHH
Q psy5911 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISK 316 (1242)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~ 316 (1242)
|++|+..+|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|+++++|++++
T Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~ 312 (554)
T 1yuw_A 237 MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRG 312 (554)
T ss_dssp HHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHH
Confidence 999999999999999998999999999999999999999999888888866543 4678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcc-cccccCCCcchhhHhHHHHhhhhhcCC----ccceE
Q psy5911 317 SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGV----VKDVL 391 (1242)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~l~~~----~~~~~ 391 (1242)
+..+++++|+++++...+|+.|+||||+|++|+|+++|++.|+ .++..+.||++|||+|||++|+.+++. .+++.
T Consensus 313 i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~ 392 (554)
T 1yuw_A 313 TLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392 (554)
T ss_dssp TTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSC
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceE
Confidence 9999999999999999999999999999999999999999995 788899999999999999999999874 57889
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|++|++||+++.+|.|.++||||++||++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++||.|+|.+
T Consensus 393 ~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 472 (554)
T 1yuw_A 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVP 472 (554)
T ss_dssp CCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCC
T ss_pred EEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHH
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQI 541 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~ 541 (1242)
+|+|+|++|.||+|+|++.++.+|++.+++|.++ .+|++++++++++++++++++|+..+++.+++|+++
T Consensus 473 ~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e 543 (554)
T 1yuw_A 473 QIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543 (554)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred EEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877 569999999999999999999988888888877763
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-86 Score=811.61 Aligned_cols=542 Identities=53% Similarity=0.812 Sum_probs=509.6
Q ss_pred ccccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCC
Q psy5911 640 IGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYT 719 (1242)
Q Consensus 640 ~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~ 719 (1242)
|+|..++|||+||+||+++++++|.++++.|+.|++.+||+|+|.++ .++||..|+.+...+|.++++++|||||+.++
T Consensus 1 M~m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~ 79 (554)
T 1yuw_A 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFD 79 (554)
T ss_dssp CCSCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSS
T ss_pred CCCCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCC
Confidence 34556899999999999999999999999999999999999999865 78999999999999999999999999999999
Q ss_pred ChhHHhhcccCceEEEEcCCCCeEEEEc--C--eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHH
Q psy5911 720 DEIVQKDIKMVPYKIVAADNGDAWVEVK--D--QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 795 (1242)
Q Consensus 720 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~ 795 (1242)
|+.++...+.+||.++. .++.+.+.+. + +.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|
T Consensus 80 d~~v~~~~~~~p~~v~~-~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~ 158 (554)
T 1yuw_A 80 DAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQAT 158 (554)
T ss_dssp CSHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHH
T ss_pred cHHHHHHhhcCCeEEEe-cCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 99999999999999884 3677766653 3 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeeechhHHHHHHccCCCC-CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHH
Q psy5911 796 KDAGKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 874 (1242)
Q Consensus 796 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D 874 (1242)
++|++.||++++++++||+|||++|+.... ..+..++|||+||||||+|++++.+ +.++++++.|+.++||++||
T Consensus 159 ~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~----g~~~v~a~~g~~~lGG~d~d 234 (554)
T 1yuw_A 159 KDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAA----GIFEVKSTAGDTHLGGEDFD 234 (554)
T ss_dssp HHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHH
T ss_pred HHHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcC----CcEEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999999998764 2468899999999999999999986 78999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHH
Q psy5911 875 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLI 954 (1242)
Q Consensus 875 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~ 954 (1242)
+.|++|+.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++...|+|++|+++++|++
T Consensus 235 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~ 310 (554)
T 1yuw_A 235 NRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLF 310 (554)
T ss_dssp HHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999998888888865543 45789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc-ccccccCCcchhhhhhHHHhhhhhccc----ccc
Q psy5911 955 SKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSGV----VKD 1029 (1242)
Q Consensus 955 ~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~-~~v~~~~~p~~aVa~GAa~~a~~l~~~----~~~ 1029 (1242)
+++..+++++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. .++
T Consensus 311 ~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~ 390 (554)
T 1yuw_A 311 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQD 390 (554)
T ss_dssp HHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999999999999999999999999995 788899999999999999999999874 578
Q ss_pred eEEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCC
Q psy5911 1030 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRG 1109 (1242)
Q Consensus 1030 ~~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g 1109 (1242)
+.+.|++|++||+++.+|.|.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|+++||.|+|
T Consensus 391 ~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g 470 (554)
T 1yuw_A 391 LLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470 (554)
T ss_dssp SCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTT
T ss_pred eEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCC-CCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHH
Q psy5911 1110 VPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188 (1242)
Q Consensus 1110 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~ 1188 (1242)
.++|+|+|++|.||+|+|++.++.||++.+++|..+. +||++|+++|++++++++++|+..+++.+++|+||+|+|.++
T Consensus 471 ~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~ 550 (554)
T 1yuw_A 471 VPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMK 550 (554)
T ss_dssp CCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSC
T ss_pred ccEEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998874 599999999999999999999999999999999999999988
Q ss_pred Hhh
Q psy5911 1189 KNL 1191 (1242)
Q Consensus 1189 ~~l 1191 (1242)
++|
T Consensus 551 ~~l 553 (554)
T 1yuw_A 551 ATV 553 (554)
T ss_dssp CCC
T ss_pred Hhh
Confidence 765
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-83 Score=773.08 Aligned_cols=508 Identities=62% Similarity=0.931 Sum_probs=475.6
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.+||||||||||+||++.+|.+++++|+.|.+.+||+|+|. ++.++||++|+.+...+| ++++++||+||+++.
T Consensus 1 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~-~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~-- 76 (509)
T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK-NGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK-- 76 (509)
T ss_dssp CCCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES-SSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC--
T ss_pred CCCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC-CCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE--
Confidence 6789999999999999999999999999999999999999994 568999999999999999 999999999998432
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
+.+++..++|+++++++|++|+..++.+++.++.++|||||++|++.||++|++|++.
T Consensus 77 ----------------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~ 134 (509)
T 2v7y_A 77 ----------------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRI 134 (509)
T ss_dssp ----------------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----------------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 2335667899999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
||++++++++||+|||++|+.... .+.++||||+||||||+|++++.+ +.++++++.|+.++||.+||+.|++|+
T Consensus 135 AGl~~~~li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~----g~~~v~a~~g~~~lGG~d~d~~l~~~l 209 (509)
T 2v7y_A 135 AGLEVERIINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGD----GVFEVKATAGDNHLGGDDFDQVIIDYL 209 (509)
T ss_dssp TTCEEEEEEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cCCCeEEEecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcC----CeEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999998764 678999999999999999999876 789999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.+|+.++.++|||++|+++++|+++++..++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i 289 (509)
T 2v7y_A 210 VNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPV 289 (509)
T ss_dssp HHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999988889988776544344567889999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCccceEEEeeccceeE
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLG 401 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~d~~~~sig 401 (1242)
+++|+++++...+|+.|+||||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.+++..+++.+.|++|++||
T Consensus 290 ~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slg 369 (509)
T 2v7y_A 290 RQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLG 369 (509)
T ss_dssp HHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEE
T ss_pred HHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccc
Confidence 99999999998999999999999999999999999999999999999999999999999999987788999999999999
Q ss_pred EEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCEEEEEEEecC
Q psy5911 402 IETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481 (1242)
Q Consensus 402 i~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~~~~d~ 481 (1242)
+++.++.|.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|+++||.|+|.++|+|+|++|.
T Consensus 370 i~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 449 (509)
T 2v7y_A 370 IETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDA 449 (509)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECT
T ss_pred eeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy5911 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQ 540 (1242)
Q Consensus 482 ~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~ 540 (1242)
||+|+|++.++.||++.+++|..+.+|++++++++++++++++++|+..+++.+++|++
T Consensus 450 ~gil~v~a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~ 508 (509)
T 2v7y_A 450 NGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEA 508 (509)
T ss_dssp TSCEEEEEEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC----
T ss_pred CceEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhc
Confidence 99999999999999999999998889999999999999999999999998888888876
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-81 Score=754.68 Aligned_cols=508 Identities=61% Similarity=0.914 Sum_probs=475.0
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|||+||++++++++.+|.+++++|+.|++.+||+|+| .+++++||..|+.+...+| ++++++||+||+++.
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~--- 76 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK--- 76 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC---
T ss_pred CCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE---
Confidence 35789999999999999999999999999999999999999 4568999999999999999 999999999998432
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
+.+++..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|++.|
T Consensus 77 ---------------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~A 135 (509)
T 2v7y_A 77 ---------------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIA 135 (509)
T ss_dssp ---------------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred ---------------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 23456678999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
|++++++++||+|||++|+.... .+..+||||+||||||+|++++.+ +.++++++.++.++||++||+.|++|+.
T Consensus 136 Gl~~~~li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~----g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 210 (509)
T 2v7y_A 136 GLEVERIINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGD----GVFEVKATAGDNHLGGDDFDQVIIDYLV 210 (509)
T ss_dssp TCEEEEEEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred CCCeEEEecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcC----CeEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998764 678899999999999999999976 7899999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++|+.+++.++..+++++.+|+.+||++|+.||....+.+.+|.+..+.+|..++.++|||++|+++++|+++++.++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 290 (509)
T 2v7y_A 211 NQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVR 290 (509)
T ss_dssp HHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999999888999887765444445678899999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcccccceEEeecccceeeE
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGI 1042 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~~~~gi 1042 (1242)
++|+++++...+++.|+||||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.+++..+++.+.|++|++||+
T Consensus 291 ~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slgi 370 (509)
T 2v7y_A 291 QALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGI 370 (509)
T ss_dssp HHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEEE
T ss_pred HHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccce
Confidence 99999999888999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred EEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCEEEEEEEEcCC
Q psy5911 1043 ETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 1122 (1242)
Q Consensus 1043 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 1122 (1242)
++.++.|.++||||++||+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|+++||.|+|.++|+|+|++|.|
T Consensus 371 ~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 450 (509)
T 2v7y_A 371 ETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDAN 450 (509)
T ss_dssp EETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTT
T ss_pred eecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1123 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1123 g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
|+|+|++.++.||++.+++|..+.+||++|+++|++++++++++|+..+++.+++|+||
T Consensus 451 gil~v~a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 451 GIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred ceEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 99999999999999999999998889999999999999999999999999999999986
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-59 Score=548.92 Aligned_cols=383 Identities=70% Similarity=1.081 Sum_probs=351.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCCh
Q psy5911 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 81 (1242)
Q Consensus 2 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 81 (1242)
|+.+||||||||||++|++.+|.++++.|+.|.+.+||+|+|.++++++||+.|+.+...+|.++++++||+||+.+.++
T Consensus 1 m~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 80 (383)
T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (383)
T ss_dssp --CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSH
T ss_pred CCcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcH
Confidence 67899999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHH
Q psy5911 82 IVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKI 161 (1242)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~ 161 (1242)
.++...+.+||.++...++...+.++++.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|++.
T Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~ 160 (383)
T 1dkg_D 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (383)
T ss_dssp HHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 89988889999998888888888888889999999999999999999999998899999999999999999999999999
Q ss_pred cCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHH
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l 241 (1242)
||++++.+++||+|||++|+......+..+||||+||||+|+++++.....+.+.++++++.++..+||++||+.|++++
T Consensus 161 aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 240 (383)
T 1dkg_D 161 AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 (383)
T ss_dssp TTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765446778999999999999999998743333678899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q psy5911 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPC 321 (1242)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i 321 (1242)
.++|..+++.++..+++.+.+|+..||++|+.||......+.++.+....+|+.++.+.|||++|+++++|+++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i 320 (383)
T 1dkg_D 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELL 320 (383)
T ss_dssp HHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 99999988988888999999999999999999999888888887665433333567789999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 322 EVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 322 ~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
+++|+.+++...+++.|+|+||+|++|+|+++|++.|+.++..+.||+++||+|||++|+.++
T Consensus 321 ~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 999999999888999999999999999999999999999999999999999999999998764
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=550.23 Aligned_cols=375 Identities=53% Similarity=0.828 Sum_probs=349.1
Q ss_pred CCCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCC
Q psy5911 1 QYCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 80 (1242)
Q Consensus 1 q~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 80 (1242)
|...+||||||||||+||++.+|.+++++++.|++++||+|+|.++ .++||..|+.+...+|.++++++||+||+++++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred ccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 4567999999999999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred hHHHHHhccCCeEEEecCCCCeEEEE--cC--eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 81 EIVQTVLKMVPYKIVAADNGDAWVEV--KD--KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATK 156 (1242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~ 156 (1242)
+.++...+.+||.++. .++...+.+ .+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|+
T Consensus 100 ~~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 178 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178 (404)
T ss_dssp HHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHH
Confidence 9999999999999886 556666555 34 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechHHHHHHHhccCCCC---CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHH
Q psy5911 157 DAGKIAGLEVLRIINEPTAAALAYGLDKKP---DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 233 (1242)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~---~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~i 233 (1242)
+|++.||++++++++||+|||++|+..... .+..++|||+||||+|++++++.+ +.++++++.++..+||.+|
T Consensus 179 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~~ 254 (404)
T 3i33_A 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDF 254 (404)
T ss_dssp HHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHH
T ss_pred HHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeC----CeEEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999877652 578899999999999999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHH
Q psy5911 234 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDL 313 (1242)
Q Consensus 234 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~ 313 (1242)
|+.|++++.++|+.+++.++..+++.+.+|+.+||++|+.||......+.++.+..+ .++.+.|+|++|+++++|+
T Consensus 255 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i~r~~~~~~~~~~ 330 (404)
T 3i33_A 255 DNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSITRARFEELNADL 330 (404)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEEcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888766544 5788999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc-ccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 314 ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 314 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
++++.++++++|+.+++...+|+.|+||||+|++|+|+++|++.| +.++..+.||+++||+|||++|+.+++
T Consensus 331 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 331 FRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999 788999999999999999999999875
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-57 Score=534.56 Aligned_cols=370 Identities=28% Similarity=0.445 Sum_probs=334.6
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
..+||||||||||+||++.+|.++++.++.|.+.+||+|+|.+ +.++||..|..+...+|.++++++|+++|++++++.
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchh
Confidence 3699999999999999999999999999999999999999985 588999999999999999999999999999987765
Q ss_pred HHHHhccCCeEEEecCCCCeEEEEcC--------eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHH
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEVKD--------KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQA 154 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~ 154 (1242)
++.. .+++.+. ..++.+.+.+.. +.++|+++++++|++|++.++.+++.++.++|||||++|++.||++
T Consensus 92 ~~~~--~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~ 168 (409)
T 4gni_A 92 PTHN--HASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAA 168 (409)
T ss_dssp CGGG--TTSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHH
T ss_pred hhhh--cccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHH
Confidence 5443 2333332 346677777643 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeeeeechHHHHHHHhccCC--CCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHH
Q psy5911 155 TKDAGKIAGLEVLRIINEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232 (1242)
Q Consensus 155 ~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~ 232 (1242)
|++|++.|||+++++++||+|||++|+... ...+..++|||+||||+|+|++++.+ +.++++++.++..+||.+
T Consensus 169 ~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~ 244 (409)
T 4gni_A 169 LIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRS----GMYTILATVHDYEYHGIA 244 (409)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEESSSSHHH
T ss_pred HHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeC----CeEEEEEecCCCCcCHHH
Confidence 999999999999999999999999998864 24678899999999999999999987 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q psy5911 233 FDMRIINHLIYEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 310 (1242)
Q Consensus 233 iD~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~ 310 (1242)
||+.|++++..+|..+++ .+...+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|++++
T Consensus 245 ~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~ 320 (409)
T 4gni_A 245 LDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIA 320 (409)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHH
Confidence 999999999999999888 7788899999999999999999999999998988876644 6788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccc--c------ccCCCcchhhHhHHHHhhhh
Q psy5911 311 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE--V------KKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~--~------~~~~~p~~ava~GAa~~a~~ 382 (1242)
+|+++++..+|+++|+++++...+|+.|+||||+|++|+|+++|++.|+.+ + ....||++|||+|||++|+.
T Consensus 321 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~ 400 (409)
T 4gni_A 321 RTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASL 400 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999999999899999999999999999999999999865 3 57899999999999999987
Q ss_pred hc
Q psy5911 383 LS 384 (1242)
Q Consensus 383 l~ 384 (1242)
..
T Consensus 401 ~~ 402 (409)
T 4gni_A 401 IQ 402 (409)
T ss_dssp HH
T ss_pred hh
Confidence 55
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=523.05 Aligned_cols=382 Identities=69% Similarity=1.062 Sum_probs=350.5
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
..++|||+||++++++++++|.++++.|+.|.+.+||+|+|.++++++||..|+.+...+|.++++++||+||+.+.++.
T Consensus 2 ~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp -CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred CcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 35789999999999999999999999999999999999999877789999999999999999999999999999999998
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
++...+.+||.++...++...+.+++..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~a 161 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (383)
T ss_dssp HHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99889999999988889998888888899999999999999999999999988999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHH
Q psy5911 803 GLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 882 (1242)
|++++.+++||+|||++|+......+..++|||+||||||+++++.....+.+.++++++.++..+||++||+.|.+++.
T Consensus 162 Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 241 (383)
T 1dkg_D 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (383)
T ss_dssp TCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHH
T ss_pred CCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988754456789999999999999999987433236788999889899999999999999999
Q ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy5911 883 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCE 962 (1242)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~ 962 (1242)
++|+.+++.++..+++.+.+|+.+||++|+.|+......+.++.+....+|..++.++|+|++|+++++|+++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~ 321 (383)
T 1dkg_D 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLK 321 (383)
T ss_dssp HHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999999999998888888876654433335567899999999999999999999999
Q ss_pred HHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 963 VALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 963 ~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
++|+++++...+++.|+|+||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.++
T Consensus 322 ~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 99999998888999999999999999999999999999999999999999999999998764
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=522.77 Aligned_cols=371 Identities=52% Similarity=0.821 Sum_probs=347.0
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||++++++++.+|.++++.++.|++.+||+|+|.++ .+++|..|..+...+|.++++++||++|+.++++.++
T Consensus 25 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~ 103 (404)
T 3i33_A 25 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQ 103 (404)
T ss_dssp CEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHH
T ss_pred EEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHH
Confidence 789999999999999999999999999999999999999876 7899999999999999999999999999999999999
Q ss_pred hhcccCceEEEEcCCCCeEEEE--cC--eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEV--KD--QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
...+.|||.+.. .++...+.+ .+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|++
T Consensus 104 ~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~ 182 (404)
T 3i33_A 104 SDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGT 182 (404)
T ss_dssp HHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999886 566666555 34 6899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCC---CCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKP---DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 877 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~---~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 877 (1242)
.||++++++++||+|||++|+..... .+..++|||+||||||++++++.+ +.++++++.++..+||.+||+.|
T Consensus 183 ~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~~d~~l 258 (404)
T 3i33_A 183 ITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRM 258 (404)
T ss_dssp HHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHH
T ss_pred HcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeC----CeEEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887652 578899999999999999999987 78999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHH
Q psy5911 878 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKS 957 (1242)
Q Consensus 878 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~ 957 (1242)
.+++.++|+.+++.++..+++.+.+|+.+||++|+.||......+.++.+..+ .++.+.++|++|+++++|+++++
T Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i~r~~~~~~~~~~~~~i 334 (404)
T 3i33_A 259 VSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSITRARFEELNADLFRGT 334 (404)
T ss_dssp HHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEEcHHHHHHHHHHHHHHH
Confidence 99999999999999998999999999999999999999999888888765543 56889999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhh-cccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 958 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 958 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f-~~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
.+++.++|+++++...+++.|+||||+|++|+|+++|++.| +.++..+.||++|||+|||++|+.+++
T Consensus 335 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 335 LEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999899999999999999999999999999 788999999999999999999999875
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-54 Score=508.69 Aligned_cols=370 Identities=27% Similarity=0.428 Sum_probs=334.0
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
.++|+|+||++++++++..|.++++.|+.|.+.+||+|+|.+ +.+++|..|..+...+|.++++++||++|+.++++.+
T Consensus 14 ~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~ 92 (409)
T 4gni_A 14 VVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDP 92 (409)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCC
T ss_pred cEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhh
Confidence 478999999999999999999999999999999999999985 4789999999999999999999999999999887765
Q ss_pred HhhcccCceEEEEcCCCCeEEEEcC--------eeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHH
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEVKD--------QYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT 795 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~ 795 (1242)
+.... ++.. ...++.+.+.+.. ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|
T Consensus 93 ~~~~~--~~~~-~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~ 169 (409)
T 4gni_A 93 THNHA--SAHP-QEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAAL 169 (409)
T ss_dssp GGGTT--SCCC-EEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHH
T ss_pred hhhcc--ccce-ecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 54433 3332 2356677777643 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeeechhHHHHHHccCCC--CCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHH
Q psy5911 796 KDAGKIAGLEVLRIINEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 873 (1242)
Q Consensus 796 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~ 873 (1242)
++|++.|||+++++++||+|||++|+... ...+..++|||+||||||+|++++.+ +.++++++.++..+||.+|
T Consensus 170 ~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~~ 245 (409)
T 4gni_A 170 IAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRS----GMYTILATVHDYEYHGIAL 245 (409)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEESSSSHHHH
T ss_pred HHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeC----CeEEEEEecCCCCcCHHHH
Confidence 99999999999999999999999998874 24678899999999999999999987 8999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcC--CCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHH
Q psy5911 874 DMRIINHLIYEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVE 951 (1242)
Q Consensus 874 D~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~ 951 (1242)
|+.|++++..+|..+++ .+...+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++++
T Consensus 246 d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~ 321 (409)
T 4gni_A 246 DKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIAR 321 (409)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHHH
Confidence 99999999999999888 7788899999999999999999999999998888876543 56889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhccc--c------cccCCcchhhhhhHHHhhhhh
Q psy5911 952 DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE--V------KKDINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 952 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~--v------~~~~~p~~aVa~GAa~~a~~l 1023 (1242)
|+++++.++|+++|+++++...+|+.|+||||+|++|+|++.|++.|+.+ + ....||++|||+|||++|+..
T Consensus 322 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~ 401 (409)
T 4gni_A 322 TVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLI 401 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999889999999999999999999999999865 3 578999999999999999876
Q ss_pred cc
Q psy5911 1024 SG 1025 (1242)
Q Consensus 1024 ~~ 1025 (1242)
..
T Consensus 402 ~~ 403 (409)
T 4gni_A 402 QE 403 (409)
T ss_dssp HC
T ss_pred hh
Confidence 53
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=376.08 Aligned_cols=314 Identities=25% Similarity=0.356 Sum_probs=239.8
Q ss_pred CCCeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC-Cc-EEEcHHHHHhhhhCCCchhhhchhhhCCCC
Q psy5911 1 QYCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKY 78 (1242)
Q Consensus 1 q~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~ 78 (1242)
+|+.+||||||||||++++..++ .++ .+||+|+|..+ ++ +++|++|+....++|.++...
T Consensus 1 ~~~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~--------- 62 (344)
T 1jce_A 1 MLRKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI--------- 62 (344)
T ss_dssp ---CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE---------
T ss_pred CCCceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE---------
Confidence 57889999999999999875443 222 27999999876 44 579999998777777664321
Q ss_pred CChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHh--HhcCCCCcEEEEecCCCCHHHHHHHH
Q psy5911 79 TDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAET--FLNEKIEKAVITVPAYFNDSQRQATK 156 (1242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~--~~~~~~~~~vitVPa~f~~~qr~~~~ 156 (1242)
+|+. ...+...+....+++++.+.+.. .++ ..++|||||++|++.||++++
T Consensus 63 -----------~p~~--------------~g~i~~~~~~~~i~~~~l~~~~~~~~~~--~~~~vitvP~~~~~~~r~~~~ 115 (344)
T 1jce_A 63 -----------RPMR--------------DGVIADYTVALVMLRYFINKAKGGMNLF--KPRVVIGVPIGITDVERRAIL 115 (344)
T ss_dssp -----------CCEE--------------TTEESSHHHHHHHHHHHHHHHHTSCCSC--CCEEEEEECTTCCHHHHHHHH
T ss_pred -----------ecCC--------------CCeeCChHHHHHHHHHHHHHHhhccccC--CCeEEEEECCCCCHHHHHHHH
Confidence 1221 11122333444444444444433 233 478999999999999999999
Q ss_pred HHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 157 DAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
+|++.||++++.+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++..+||.+||+.
T Consensus 116 ~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~--------~~-~~~~~~lGG~~id~~ 185 (344)
T 1jce_A 116 DAGLEAGASKVFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGS--------IV-TWESIRIAGDEMDEA 185 (344)
T ss_dssp HHHHHTTCSEEEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTE--------EE-EEEEESCSHHHHHHH
T ss_pred HHHHHcCCCeEeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCC--------EE-eeCCCCccChhHHHH
Confidence 99999999999999999999999987654 567789999999999999998643 11 245678999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce------eeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q psy5911 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ------TDINLPYITADKNGPKHLNVKITRSKLESLV 310 (1242)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~ 310 (1242)
|.+++.+++.. ++. ...||++|+.|+.... ..+.++... ..++.+..++|+|++|++++
T Consensus 186 l~~~l~~~~~~----~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~i~~~~~~~~~ 250 (344)
T 1jce_A 186 IVQYVRETYRV----AIG---------ERTAERVKIEIGNVFPSKENDELETTVSGID--LSTGLPRKLTLKGGEVREAL 250 (344)
T ss_dssp HHHHHHHHHCE----ECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEE--TTTTEEEEEEEEHHHHHHHT
T ss_pred HHHHHHHHhCc----ccC---------HHHHHHHHHHHhccCccccCCcceEEEeccc--cCCCCceeEEEeHHHHHHHH
Confidence 99999877642 221 4689999999997643 234443211 11224578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC--cCCc-ceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 311 EDLISKSLKPCEVALNDAKID--KSKI-SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~--~~~i-~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
+|.++++.+.|+++|+.++.. ...+ +.|+|+||+|++|+|+++|++.|+.++....||+++||+||+++++.++
T Consensus 251 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 251 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 999999999999999987532 1224 7899999999999999999999999888899999999999999998655
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=332.84 Aligned_cols=212 Identities=57% Similarity=0.901 Sum_probs=206.8
Q ss_pred EEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCc
Q psy5911 1031 LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 1110 (1242)
Q Consensus 1031 ~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~ 1110 (1242)
++.||+|+||||++.+|.|.++||||++||++++++|+|..|||+.+.|++|||++..+.+|..||+|.|.|+||+|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHh
Q psy5911 1111 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190 (1242)
Q Consensus 1111 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~ 1190 (1242)
++|+|+|++|.||+|+|+|.++.||++.+++|.++.+||++||++|++++++++++|+..+++.+++|.||+|+|++++.
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~ 161 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 161 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
|+++..++++++++++..+++++++||++++.++|++++++|+..+.||+.|
T Consensus 162 l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~~~~~~i~~~ 213 (219)
T 4e81_A 162 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 213 (219)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9888889999999999999999999999999999999999999999999864
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=351.52 Aligned_cols=314 Identities=24% Similarity=0.345 Sum_probs=239.3
Q ss_pred cccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC-Cc-EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCC
Q psy5911 643 YPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED-NR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 720 (1242)
Q Consensus 643 ~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~-~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d 720 (1242)
..++|||+||+++++++..+| .++ .+||+|+|.++ ++ .++|++|+.....+|.++...
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~----------- 62 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI----------- 62 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE-----------
T ss_pred CceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE-----------
Confidence 357899999999999875433 333 27999999876 44 479999998777777665321
Q ss_pred hhHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHH
Q psy5911 721 EIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800 (1242)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~ 800 (1242)
+|+. +|. +. ....+++++++++++++.. ..++ ...+|||||++|++.||+++++|++
T Consensus 63 ---------~p~~-----~g~----i~-~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~ 119 (344)
T 1jce_A 63 ---------RPMR-----DGV----IA-DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGL 119 (344)
T ss_dssp ---------CCEE-----TTE----ES-SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ---------ecCC-----CCe----eC-ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 1221 110 00 0112455555555554432 1233 4789999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHH
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 880 (1242)
.||++++.+++||+|||++|+.... .+..++|||+||||||+++++... . + ..++..+||.+||+.|.++
T Consensus 120 ~aG~~~~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~----~----~-~~~~~~lGG~~id~~l~~~ 189 (344)
T 1jce_A 120 EAGASKVFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGS----I----V-TWESIRIAGDEMDEAIVQY 189 (344)
T ss_dssp HTTCSEEEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTE----E----E-EEEEESCSHHHHHHHHHHH
T ss_pred HcCCCeEeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCC----E----E-eeCCCCccChhHHHHHHHH
Confidence 9999999999999999999987654 456789999999999999998643 1 1 2456789999999999999
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce------eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHH
Q psy5911 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ------TDINLPYITADKNGPKHLNVKITRSKLESLVEDLI 954 (1242)
Q Consensus 881 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~ 954 (1242)
+.++++.... ...||++|+.|+.... ..+.++.. +..++.+..++|+|++|+++++|.+
T Consensus 190 l~~~~~~~~~-------------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~i~~~~~~~~~~~~~ 254 (344)
T 1jce_A 190 VRETYRVAIG-------------ERTAERVKIEIGNVFPSKENDELETTVSGI--DLSTGLPRKLTLKGGEVREALRSVV 254 (344)
T ss_dssp HHHHHCEECC-------------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEE--ETTTTEEEEEEEEHHHHHHHTHHHH
T ss_pred HHHHhCcccC-------------HHHHHHHHHHHhccCccccCCcceEEEecc--ccCCCCceeEEEeHHHHHHHHHHHH
Confidence 9887643211 4689999999987642 24444321 1122345788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC--ccCc-ceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 955 SKSLKPCEVALNDAKID--KSKI-SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 955 ~~~~~~i~~~l~~~~~~--~~~i-~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
+++.+.|.++|++++.. ...+ +.|+|+||+|++|.++++|++.|+.++....||+++||+||+++|+.++
T Consensus 255 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 255 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 99999999999987632 1224 7899999999999999999999999888899999999999999998655
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=312.72 Aligned_cols=210 Identities=37% Similarity=0.597 Sum_probs=203.9
Q ss_pred eecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCE
Q psy5911 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 1112 (1242)
Q Consensus 1033 ~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~ 1112 (1242)
.|++|++|||++.+|.|.+|||||++||++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.|+||.|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhh
Q psy5911 1113 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLK 1192 (1242)
Q Consensus 1113 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~ 1192 (1242)
|+|+|++|.||+|+|++.+..+|++.+++|..+.+||++++++|+++++++.++|+..+++.+++|.||+|+|.+++.|+
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999998
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1193 DENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
++..++++++++++..+|+++++||++++.++|++++++|+..+.||+.|
T Consensus 161 ~~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~~~i~~r 210 (227)
T 1u00_A 161 ADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAAR 210 (227)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999889999999999999999999864
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=269.21 Aligned_cols=165 Identities=58% Similarity=0.825 Sum_probs=154.9
Q ss_pred ccceEEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCC
Q psy5911 1027 VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPA 1106 (1242)
Q Consensus 1027 ~~~~~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~ 1106 (1242)
...+.+.|++|+||||++.+|.|.++||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHH
Q psy5911 1107 PRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISI 1186 (1242)
Q Consensus 1107 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~ 1186 (1242)
|+|.++|+|+|++|.||+|+|+|.++.||++.+++|..+.+||++|+++|++++++++++|++.+++.+++|+||+|+|+
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~ 176 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHD 176 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy5911 1187 VKKNL 1191 (1242)
Q Consensus 1187 ~~~~l 1191 (1242)
+|+.|
T Consensus 177 ~~~~l 181 (182)
T 3n8e_A 177 TETKM 181 (182)
T ss_dssp CSCCC
T ss_pred HHHhh
Confidence 98765
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=256.01 Aligned_cols=154 Identities=69% Similarity=1.046 Sum_probs=149.6
Q ss_pred EEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCc
Q psy5911 391 LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 470 (1242)
Q Consensus 391 ~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 470 (1242)
++.|++|+||||++.+|.|.+|||||++||++++++|++..|||+.+.|+||||++.++.+|..||+|.|.|+||+|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 471 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 471 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
++|+|+|++|.||+|+|+|.++.||++..++|.++.+|+++++++|++++++++++|+..+++.+++|+++.++
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i 155 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLL 155 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999997765
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=246.51 Aligned_cols=150 Identities=55% Similarity=0.831 Sum_probs=145.4
Q ss_pred EeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcC
Q psy5911 1032 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111 (1242)
Q Consensus 1032 ~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~ 1111 (1242)
+.|++|+|||+++.+|.|.++||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+||.|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCeeEEEEEEecCCCceEEEEEccC-CCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1112 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
+|+|+|++|.||+|+|+|.++.||++.+++|..+ .+||++|+++|++++++|+++|+..+++.+++|+||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999987 579999999999999999999999999999999876
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=247.34 Aligned_cols=150 Identities=49% Similarity=0.803 Sum_probs=142.3
Q ss_pred EeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcC
Q psy5911 1032 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111 (1242)
Q Consensus 1032 ~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~ 1111 (1242)
+.|++|+|||+++.+|.|.++||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+||.|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCC-CCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1112 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~-l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
+|+|+|++|.||+|+|+|.++.||++.+++|..+.+ ||++|+++|++++++++++|++.+++.+++|+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998765 9999999999999999999999999999999875
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=248.00 Aligned_cols=150 Identities=64% Similarity=0.941 Sum_probs=144.8
Q ss_pred EeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcC
Q psy5911 1032 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111 (1242)
Q Consensus 1032 ~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~ 1111 (1242)
+.|++|+|||+++.+|.|.++||||++||++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||.|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1112 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
+|+|+|++|.||+|+|+|.++.||++.+++|..+.+||++|+++|++++++|+++|++.+++.+++|+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988889999999999999999999999999999999875
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=243.90 Aligned_cols=158 Identities=59% Similarity=0.839 Sum_probs=147.0
Q ss_pred ccceEEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCC
Q psy5911 387 VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPA 466 (1242)
Q Consensus 387 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 466 (1242)
...+.+.|++|+||||++.+|.|.+|||||++||++++++|++..|||+.+.|.+|||++..+.+|..||+|.|.++||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 467 PRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 467 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|+|.++|+|+|++|.||+|+|+|.++.||++..++|..+.+|+++++++|++++++++++|+..+++.+++|+++.++
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~i 174 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGII 174 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988889999999999999999999999999999999995554
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-28 Score=238.51 Aligned_cols=149 Identities=55% Similarity=0.830 Sum_probs=142.2
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|||+.+.|.+|||++..+.+|.+||+|.|.++||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQ 540 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~ 540 (1242)
+|+|+|++|.||+|+|+|.++.||++..++|..+ ++|+++++++|++++++++++|+..++..+++|++
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~l 151 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKL 151 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999977 67999999999999999999999988888777654
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=239.47 Aligned_cols=148 Identities=49% Similarity=0.794 Sum_probs=137.2
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|||+.+.|.+|||++..+.+|.+||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCC-CCchHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~ 539 (1242)
+|+|+|++|.||+|+|+|.++.||++..++|..+. +|+++++++|++++++++++|+..++..+++|+
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~ 150 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQ 150 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSE
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999775 599999999999999999999988777665554
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=240.56 Aligned_cols=147 Identities=65% Similarity=0.944 Sum_probs=137.9
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|||+.+.|.+|||++..+.+|.+||+|.|.++||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHH
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN 538 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~ 538 (1242)
+|+|+|++|.||+|+|+|.++.||++..++|..+.+|+++++++|++++++++++|+..++..+++|
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n 148 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVIN 148 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999988899999999999999999999887665544443
|
| >4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=237.58 Aligned_cols=144 Identities=15% Similarity=0.233 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC--cchhhhHHHHHH
Q psy5911 532 ELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS--NQTKESEIIFLI 609 (1242)
Q Consensus 532 e~~e~~~~~~~~~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~--~~~~~~~g~~~~ 609 (1242)
++.+++.++ ..++++|+|+.|+++|+|||++||++++++||+++|+++||||+|||+||+++... +..++.+|++||
T Consensus 67 ~l~~l~~e~-~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi 145 (213)
T 4ani_A 67 QIAELEAKL-SEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMV 145 (213)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 334444444 33469999999999999999999999999999999999999999999999987654 345899999999
Q ss_pred HHHHHHHHHhccceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEe
Q psy5911 610 FKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYT 684 (1242)
Q Consensus 610 ~~~~~~~~~~~g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~ 684 (1242)
+++|.++|+++||++|++.|++|||++||||++.+..+.+ .++|+.|+|+|= . -.++-.-|+.|...
T Consensus 146 ~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~---~gtVv~V~qkGY--~---l~dRVLRpA~V~Va 212 (213)
T 4ani_A 146 YRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYE---PNTVVEELQKGY--K---LKDRVLRPAMVKVS 212 (213)
T ss_dssp HHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSC---SSSEEEEEECCC--E---ETTSCCSCEEEEEE
T ss_pred HHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCC---CCcEEEEEeCCe--E---ECCEEeeceEEEeC
Confidence 9999999999999999999999999999999987765555 556999999992 1 12334458877653
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=230.96 Aligned_cols=150 Identities=53% Similarity=0.800 Sum_probs=144.5
Q ss_pred EeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcC
Q psy5911 1032 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111 (1242)
Q Consensus 1032 ~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~ 1111 (1242)
+.|++|++||+++.+|.|.+|||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCeeEEEEEEecCCCceEEEEEccC-CCCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1112 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
+|+|+|++|.||+|+|++.+..+|++..++|..+ .+|+++|+++|++++++|+.+|+..+++.+++|+||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999887 469999999999999999999999999999999875
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=233.68 Aligned_cols=152 Identities=45% Similarity=0.683 Sum_probs=147.4
Q ss_pred EeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCE
Q psy5911 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 472 (1242)
Q Consensus 393 ~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 472 (1242)
.|++|+||||++.+|.|.+|||||++||++++++|++..|+|+.+.|++|||++.++.+|..||+|.|.|+||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy5911 473 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIIL 544 (1242)
Q Consensus 473 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~ 544 (1242)
|+|+|++|.||+|+|++.+..+|++..++|..+.+|+++++++|++++++++++|...++..+++|++++++
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i 152 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL 152 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988889999999999999999999999999999999997775
|
| >1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=235.08 Aligned_cols=134 Identities=22% Similarity=0.327 Sum_probs=113.8
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCC---cchhhhHHHHHHHHHHHHHHHhc
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS---NQTKESEIIFLIFKLIKKFYKKF 620 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~ 620 (1242)
++++|+|..|+++|+|||+++|++++++||+++|+++||||+||||||+++... ...++.+|++||+++|.++|+++
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv~~~~~~l~~~L~~~ 137 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLDVVRKF 137 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC
Confidence 458999999999999999999999999999999999999999999999988642 24678999999999999999999
Q ss_pred cceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEec
Q psy5911 621 NIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE 685 (1242)
Q Consensus 621 g~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~ 685 (1242)
||++|++.|++|||++||||++.+..+.+ .++++.|+|+|=. -.++-.-|+.|....
T Consensus 138 Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~---~~tVv~v~qkGY~-----l~dRvLRpA~V~V~~ 194 (197)
T 1dkg_A 138 GVEVIAETNVPLDPNVHQAIAMVESDDVA---PGNVLGIMQKGYT-----LNGRTIRAAMVTVAK 194 (197)
T ss_dssp TEEEECCCSSBCCTTSEEEEEEEECSSSC---TTBEEEEEECEEE-----ETTEEEECEEEEEEE
T ss_pred CCEEeCCCCCCCCHHHhheeeeecCCCCC---cCeEEEEeeCCee-----eCCEEecceEEEecC
Confidence 99999999999999999999987765555 4569999999921 122333478777653
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=266.66 Aligned_cols=231 Identities=17% Similarity=0.132 Sum_probs=170.7
Q ss_pred cCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEE--EEecCCCCHHHHHHHHHHHHHc--------C------CCeeeee
Q psy5911 107 KDKKLAPPQISAEILKKMKSTAETFLNEKIEKAV--ITVPAYFNDSQRQATKDAGKIA--------G------LEVLRII 170 (1242)
Q Consensus 107 ~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~v--itVPa~f~~~qr~~~~~Aa~~A--------G------l~~~~li 170 (1242)
.+..+.++...++++..|+..++.....+ .++| |+||++|++.||+++++|+..+ | ++.++++
T Consensus 91 ~~~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li 169 (346)
T 2fsj_A 91 GDGRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR 169 (346)
T ss_dssp STTCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEE
T ss_pred CCCcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEE
Confidence 34456677788888888877653333333 5699 9999999999999999997775 4 3558899
Q ss_pred chHHHHHHHhc--cCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHh
Q psy5911 171 NEPTAAALAYG--LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 248 (1242)
Q Consensus 171 ~Ep~AAal~y~--~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~ 248 (1242)
+||+|||++|. ........+++|+|+||||||++++++.+ +. .+.+..++..+||.+|++.|.+++..++.
T Consensus 170 ~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~----g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g-- 242 (346)
T 2fsj_A 170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMD----ME-PVVELSFSLQIGVGDAISALSRKIAKETG-- 242 (346)
T ss_dssp ETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTT----TE-ECGGGCEEESCCHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecC----CE-EEeecCCCcchhHHHHHHHHHHHHHHHhC--
Confidence 99999999982 11122347889999999999999998654 44 45555677889999999999888776654
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy5911 249 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL-ESLVEDLISKSLKPCEVALND 327 (1242)
Q Consensus 249 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~f-e~l~~~~~~~i~~~i~~~l~~ 327 (1242)
... .. . ...+| .. ..+.+. + . .++++++ +++++++++++.+.+++.|++
T Consensus 243 --~~~--~i-~----~~~~e-------~~--~~~~~~-------g-~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~ 292 (346)
T 2fsj_A 243 --FVV--PF-D----LAQEA-------LS--HPVMFR-------Q-K----QVGGPEVSGPILEDLANRIIENIRLNLRG 292 (346)
T ss_dssp --CCC--CH-H----HHHHH-------TT--SCEEET-------T-E----EECSHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred --CCc--CC-C----HHHHh-------cC--CeEeEC-------C-c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 310 00 0 11222 01 112221 1 1 3568999 999999999999999999987
Q ss_pred cCCCcCCcceEEEecCccChHHHHHHHHHhccccccc---CCCcchhhHhHHHHhhh
Q psy5911 328 AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK---DINPDEAVAVGASVQAG 381 (1242)
Q Consensus 328 ~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~---~~~p~~ava~GAa~~a~ 381 (1242)
+ .+.++.|+|+||+|++ +++.+++.|+. ... ..||++|+|+|+..++.
T Consensus 293 ~---~~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 293 E---VDRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp G---GGGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred h---hhcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 6 4568999999999999 99999999973 334 67999999999987754
|
| >3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=229.01 Aligned_cols=131 Identities=15% Similarity=0.279 Sum_probs=114.3
Q ss_pred HHHHHhhhHHHhhccchhhHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCcchhhhHHHHHHHHHHHHHHHhccce
Q psy5911 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIK 623 (1242)
Q Consensus 544 ~~~~~~~~~a~~~n~~kr~~~~~~~~~~~~~~~~~~~ll~v~d~~e~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 623 (1242)
++++|+|..||++|+|||+++|++++++||.++|+++||||+||||||+++.+.+..++.+|++||+++|.++|+++||+
T Consensus 38 ~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~~~~l~~~L~k~Gv~ 117 (177)
T 3a6m_A 38 LKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLGVE 117 (177)
T ss_dssp HHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 46889999999999999999999999999999999999999999999998865555679999999999999999999999
Q ss_pred ecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEec
Q psy5911 624 QISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE 685 (1242)
Q Consensus 624 ~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~ 685 (1242)
+|++.|++|||++||||++.+. + .++++.|+|+|=. -.+.-.-|+.|....
T Consensus 118 ~i~~~Ge~FDP~~HeAv~~~~~---~---~gtVv~v~qkGY~-----l~dRvLRpA~V~V~~ 168 (177)
T 3a6m_A 118 EVPGEGEAFDPRYHEAVGLLPG---E---PGKVAKVFQRGFR-----MGEALVRPARVAVGE 168 (177)
T ss_dssp ECCCTTSBCCTTTEEEEEEEES---S---TTBEEEEEECCEE-----ETTEEEECEEEEEEE
T ss_pred EeCCCCCCCCHHHhhhhhcccC---C---cCeEEEEeecCee-----eCCEEecCeEEEEeC
Confidence 9999999999999999997654 3 5679999999921 123334488887764
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=222.93 Aligned_cols=148 Identities=53% Similarity=0.808 Sum_probs=139.0
Q ss_pred EEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcC
Q psy5911 392 LLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 471 (1242)
Q Consensus 392 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 471 (1242)
+.|++|++||+++.+|.|.+||+||++||++++++|++..|||+.+.|.+|||++..+.+|..||+|.|.++||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecC-CCCchHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q psy5911 472 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSS-GGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539 (1242)
Q Consensus 472 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~-~~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~ 539 (1242)
+|+|+|++|.||+|+|++.+..+|++..++|..+ .+|++++++++++++++++.+|+..++..+++|+
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~ 150 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNE 150 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSE
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999877 5699999999999999999988887776665553
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=261.08 Aligned_cols=300 Identities=14% Similarity=0.182 Sum_probs=196.3
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
..++|||+||++++++++.+|.+.+. ..|...+||... . ++ ...++..+...+|+++++.
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~-~-~g-----------~i~d~~~~~~~ik~~~~~~----- 72 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL-M-EG-----------MVAEPAALAQEIKELLLEA----- 72 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE-E-TT-----------EESCHHHHHHHHHHHHHHH-----
T ss_pred CceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc-c-CC-----------CcCCHHHHHHHHHHHHHHc-----
Confidence 35899999999999999887765542 234555566432 1 12 2356677788888887741
Q ss_pred HHHHhccCCeEEEecCCCCe-EEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHH----------
Q psy5911 83 VQTVLKMVPYKIVAADNGDA-WVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ---------- 151 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~q---------- 151 (1242)
..+.... .+.-....+ ...+....++++++... ++..++++++.++.+++|.+| +.+.+
T Consensus 73 ---~~~~~~v-~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~--~~~~~~~~~~~~~~~ 142 (377)
T 2ych_A 73 ---RTRKRYV-VTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFA--PLTPLSEVQEGEQVQ 142 (377)
T ss_dssp ---TCCCCEE-EEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEE--ESSCGGGSCTTSEEE
T ss_pred ---CCCcceE-EEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEE--EeCCCCCCCCcceeE
Confidence 0000001 111111111 11122245777777653 345778889999999999998 33332
Q ss_pred ----------HHHHHHHHHHcCCCeeeeechHHHHHHHhccCC-CCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEE
Q psy5911 152 ----------RQATKDAGKIAGLEVLRIINEPTAAALAYGLDK-KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVL 220 (1242)
Q Consensus 152 ----------r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~-~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~ 220 (1242)
.+++++|++.|||++..++.||+|||++|+... ...+..++|+|+||||||+++++.. .+.
T Consensus 143 v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g------~~~-- 214 (377)
T 2ych_A 143 VMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGD------KPL-- 214 (377)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETT------EEE--
T ss_pred EEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECC------EEE--
Confidence 388999999999999999999999999986432 2345678999999999999999732 221
Q ss_pred EecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccCCCCCeeeEEE
Q psy5911 221 STNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVK 300 (1242)
Q Consensus 221 ~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~ 300 (1242)
..++..+||.+||+.|.+. ++.+ ...||++|+.++............... ......
T Consensus 215 -~~~~~~~GG~~i~~~i~~~--------~~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~----~~~~~~ 270 (377)
T 2ych_A 215 -AVRVLTLSGKDFTEAIARS--------FNLD-----------LLAAEEVKRTYGMATLPTEDEELLLDF----DAERER 270 (377)
T ss_dssp -EEEEESCSHHHHHHHHHHH--------TTCC-----------HHHHHHHHHHTC-------------------------
T ss_pred -EEEeeechHHHHHHHHHHH--------hCCC-----------HHHHHHHHhhccccccccccccccccc----cccccc
Confidence 2356789999999999873 2222 468999999998643221110000000 113457
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcCCcceEEEecCccChHHHHHHHHHhccccccc
Q psy5911 301 ITRSKLESLVEDLISKSLKPCEVALND--AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364 (1242)
Q Consensus 301 itr~~fe~l~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~ 364 (1242)
++|++|+++++|.++++...|++.|+. ++.....++.|+|+||+|++|.+++.+++.|+.++..
T Consensus 271 i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~ 336 (377)
T 2ych_A 271 YSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEP 336 (377)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEe
Confidence 899999999999999999999999985 3555667999999999999999999999999876554
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=236.83 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=176.0
Q ss_pred cChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcE
Q psy5911 111 LAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 190 (1242)
Q Consensus 111 ~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~ 190 (1242)
+...+....+|+++++.++.+.+.....+++|+|++|+..+|++++++++.+|+++..++.||+|++++|+...
T Consensus 67 i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~------ 140 (272)
T 3h1q_A 67 VVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIND------ 140 (272)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCSS------
T ss_pred EEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCCC------
Confidence 33456778899999999998888888999999999999999999999999999999999999999999997632
Q ss_pred EEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy5911 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 270 (1242)
Q Consensus 191 vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 270 (1242)
.+|+|+||||++++++.- +.+. ......+||.+||+.+.+++. .+ ...+|++
T Consensus 141 ~~viDiGggst~~~~~~~------g~~~---~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~ 192 (272)
T 3h1q_A 141 GIVVDIGGGTTGIAVIEK------GKIT---ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETI 192 (272)
T ss_dssp EEEEEECSSCEEEEEEET------TEEE---EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHH
T ss_pred EEEEEECCCcEEEEEEEC------CEEE---EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHH
Confidence 489999999999999862 2221 346678999999999988763 11 4578899
Q ss_pred hHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHH
Q psy5911 271 KIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLV 350 (1242)
Q Consensus 271 K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v 350 (1242)
|+.++ +++++++++.+.++++...+.+.++..+ +++.|+|+||+|++|.+
T Consensus 193 k~~~~--------------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l 242 (272)
T 3h1q_A 193 KKDFS--------------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGF 242 (272)
T ss_dssp HHSST--------------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTH
T ss_pred HHhcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhH
Confidence 98765 5889999999999999999999998664 47899999999999999
Q ss_pred HHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 351 QKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 351 ~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
++++++.|+.++..+.+|++++|+|||++|
T Consensus 243 ~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 243 SEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 999999999999999999999999999875
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=252.80 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=200.9
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC---------CcEEEcHHHHHhhhhCCCchhhhchhhh
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED---------NRIIVGLPAKRQAITNPNNTLYAIKRLI 74 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~vG~~A~~~~~~~~~~~~~~~k~~l 74 (1242)
..|+||+||+++++++..++.|..+ +||+|+.... ...++|++|.... . ...+++
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~--~~~~~~-- 69 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----G--ILTLKY-- 69 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----T--SEEEEC--
T ss_pred ceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----c--ccceec--
Confidence 4689999999999999866655422 2555544322 3467888887531 0 011111
Q ss_pred CCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCC--CCcEEEEecCCCCHHHH
Q psy5911 75 GRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQR 152 (1242)
Q Consensus 75 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~--~~~~vitVPa~f~~~qr 152 (1242)
| +.+..+.-.+....+++++.. +.++.. ...++||+|++++..+|
T Consensus 70 ----------------P--------------i~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r 116 (375)
T 2fxu_A 70 ----------------P--------------IEHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANR 116 (375)
T ss_dssp ----------------S--------------EETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHH
T ss_pred ----------------c--------------ccCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHH
Confidence 1 122333445566666666653 223332 34699999999999999
Q ss_pred HHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchH
Q psy5911 153 QATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 231 (1242)
Q Consensus 153 ~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 231 (1242)
+++.+++ +.+|++.+.+++||+|||++|+. .+.+|+|+||||||++.+. + + +.+....+...+||+
T Consensus 117 ~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~------~~~lVvDiG~gtt~v~~v~--~----G-~~~~~~~~~~~~GG~ 183 (375)
T 2fxu_A 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVTHNVPIY--E----G-YALPHAIMRLDLAGR 183 (375)
T ss_dssp HHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC------SSEEEEEECSSCEEEEEEE--T----T-EECGGGCEEESCCHH
T ss_pred HHHHHHHHHhcCcceEEEccchheeeeecCC------CeEEEEEcCCCceEEeEeE--C----C-EEeccceEEeccCHH
Confidence 9888764 88899999999999999999985 3579999999999998774 2 3 223333445689999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcC----------------CceeeeeccccccCCCCCe
Q psy5911 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSN----------------AEQTDINLPYITADKNGPK 295 (1242)
Q Consensus 232 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----------------~~~~~i~i~~~~~~~~~~~ 295 (1242)
++|+.|.+++..+. + .+.. . .-...+|++|+.++. .....+.+|.
T Consensus 184 ~lt~~l~~~l~~~~---~--~~~~-~----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpd--------- 244 (375)
T 2fxu_A 184 DLTDYLMKILTERG---Y--SFVT-T----AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD--------- 244 (375)
T ss_dssp HHHHHHHHHHHHHT---C--CCCS-H----HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTT---------
T ss_pred HHHHHHHHHHHhcC---C--CCCc-H----HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCC---------
Confidence 99999999997651 1 2211 0 012345556655532 2233344431
Q ss_pred eeEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCC--CcCCcceEEEecCccChHHHHHHHHHhcc------
Q psy5911 296 HLNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKI--DKSKISEIILVGGQTRMPLVQKMVSEFFE------ 359 (1242)
Q Consensus 296 ~~~~~itr~~fe---~l~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f~------ 359 (1242)
...+.++++.|+ .+++|. ...+.++|.+.|..+.. ....++.|+|+||+|++|.++++|++.++
T Consensus 245 g~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~ 324 (375)
T 2fxu_A 245 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPST 324 (375)
T ss_dssp SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTT
T ss_pred CCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCC
Confidence 135788988883 344543 24577888888886532 23346889999999999999999998875
Q ss_pred --cccccCCCcchhhHhHHHHhhhh
Q psy5911 360 --KEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 360 --~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
.++..+.+|..++++||+++|..
T Consensus 325 ~~v~v~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 325 MKIKIIAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp CCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred eeEEEEcCCCCCccEEcchHHhhCc
Confidence 34456789999999999999973
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=254.09 Aligned_cols=308 Identities=17% Similarity=0.163 Sum_probs=206.0
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCC-----------------cEEEcHHHHHhhhhCCCch
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDN-----------------RIIVGLPAKRQAITNPNNT 66 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~-----------------~~~vG~~A~~~~~~~~~~~ 66 (1242)
.+|+||+||+++++++..++.|.. .+||+|+...+. ..++|++|... + +
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~--------~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~-~- 71 (418)
T 1k8k_A 6 PACVVDCGTGYTKLGYAGNTEPQF--------IIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----P-T- 71 (418)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSE--------EEESCEEECC-----------CCCTTGGGCEEEGGGGTSC----T-T-
T ss_pred CeEEEECCCCeEEEeeCCCCCCCC--------cCCceEEEECcccccccccccccccccccCeEEChHHHhc----C-C-
Confidence 579999999999999976555542 357777765321 24455544331 0 0
Q ss_pred hhhchhhhCCCCCChHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcC--CCCcEEEEec
Q psy5911 67 LYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNE--KIEKAVITVP 144 (1242)
Q Consensus 67 ~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~--~~~~~vitVP 144 (1242)
..++ ..+....+...+....+++++.. +.++. ....++||+|
T Consensus 72 -~~~~--------------------------------~pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p 115 (418)
T 1k8k_A 72 -YATK--------------------------------WPIRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEP 115 (418)
T ss_dssp -SEEE--------------------------------CCEETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEEC
T ss_pred -CEEe--------------------------------ccccCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEEeC
Confidence 1111 11223334445555566666653 23432 2457999999
Q ss_pred CCCCHHHHHHHHHHH-HHcCCCeeeeechHHHHHHH-hccCC-CCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEE
Q psy5911 145 AYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALA-YGLDK-KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLS 221 (1242)
Q Consensus 145 a~f~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~-y~~~~-~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~ 221 (1242)
++|+..+|++|.+++ +.+|++.+.+++||+||+++ |.... ...+.+.+|+|+||||||++++.- +. .+..
T Consensus 116 ~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~~------G~-~~~~ 188 (418)
T 1k8k_A 116 PLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAE------GY-VIGS 188 (418)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEET------TE-ECGG
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeEC------CE-Eccc
Confidence 999999999999999 88999999999999999988 52111 111226799999999999999852 22 2323
Q ss_pred ecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCce-----------------eeeec
Q psy5911 222 TNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ-----------------TDINL 284 (1242)
Q Consensus 222 ~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~i~i 284 (1242)
..+...+||+++|+.|.++|..++. ..+.. .-...+|++|+.++.... ..+.+
T Consensus 189 ~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~-------~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~l 258 (418)
T 1k8k_A 189 CIKHIPIAGRDITYFIQQLLRDREV---GIPPE-------QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTG 258 (418)
T ss_dssp GCEEESCSHHHHHHHHHHHHHTTCC---CCCGG-------GHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEE
T ss_pred ceEEEeCcHHHHHHHHHHHHHhcCC---CCCCH-------HHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEEC
Confidence 3356789999999999999876532 11110 113567888888764321 22333
Q ss_pred cccccCCCCCeeeEEEEcHHHH---HHHHHHHH------HHHHHHHHHHHHHcCC--CcCCcceEEEecCccChHHHHHH
Q psy5911 285 PYITADKNGPKHLNVKITRSKL---ESLVEDLI------SKSLKPCEVALNDAKI--DKSKISEIILVGGQTRMPLVQKM 353 (1242)
Q Consensus 285 ~~~~~~~~~~~~~~~~itr~~f---e~l~~~~~------~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~ 353 (1242)
|. ...+....+++++++| |.+++|.+ ..+.++|.+.|..+.. ....++.|+|+||+|++|.++++
T Consensus 259 pd----~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~r 334 (418)
T 1k8k_A 259 IN----AISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRR 334 (418)
T ss_dssp EC----TTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHH
T ss_pred CC----CCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHH
Confidence 32 1223456789999999 55555542 5688889999987653 34457899999999999999999
Q ss_pred HHHhcccc------------------------cccCCCcchhhHhHHHHhhhh
Q psy5911 354 VSEFFEKE------------------------VKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 354 l~~~f~~~------------------------~~~~~~p~~ava~GAa~~a~~ 382 (1242)
|++.++.. +..+.+|..++.+||+++|..
T Consensus 335 l~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 335 LQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 98766321 233457889999999999864
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=249.19 Aligned_cols=230 Identities=17% Similarity=0.129 Sum_probs=170.2
Q ss_pred CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEE--EEecCCCCHHHHHHHHHHHHHc--------C------Cceeeeec
Q psy5911 748 DQYCAPPQISAEILKKMKSTAETFLNEKIEKAV--ITVPAYFNDSQRQATKDAGKIA--------G------LEVLRIIN 811 (1242)
Q Consensus 748 ~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~V--itVPa~~~~~qr~~~~~Aa~~A--------G------l~~~~li~ 811 (1242)
+..+.++...++++..|+..++...+.+ .++| ++||++|++.||+++++++..+ | +..+++++
T Consensus 92 ~~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~ 170 (346)
T 2fsj_A 92 DGRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRP 170 (346)
T ss_dssp TTCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEE
T ss_pred CCcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEc
Confidence 3445667788888888887653333333 5699 9999999999999999997765 4 35588999
Q ss_pred hhHHHHHHc--cCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhc
Q psy5911 812 EPTAAALAY--GLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIEN 889 (1242)
Q Consensus 812 Ep~AAal~y--~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~ 889 (1242)
||+|||++| ........+.++|+|+||||||++++++.+ +. .+.+.+++..+||.++++.|.+++..+++...
T Consensus 171 Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~----g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g~~~ 245 (346)
T 2fsj_A 171 QGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMD----ME-PVVELSFSLQIGVGDAISALSRKIAKETGFVV 245 (346)
T ss_dssp TTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTT----TE-ECGGGCEEESCCHHHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecC----CE-EEeecCCCcchhHHHHHHHHHHHHHHHhCCCc
Confidence 999999998 211122347899999999999999998754 44 45555677889999999999988777654200
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q psy5911 890 GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL-ESLVEDLISKSLKPCEVALNDA 968 (1242)
Q Consensus 890 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~f-e~~~~~~~~~~~~~i~~~l~~~ 968 (1242)
++. ...+| . ...+.+. + . .++++++ +++++++++++.+.+++.|+++
T Consensus 246 --~i~---------~~~~e-------~--~~~~~~~-------g-~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~ 293 (346)
T 2fsj_A 246 --PFD---------LAQEA-------L--SHPVMFR-------Q-K----QVGGPEVSGPILEDLANRIIENIRLNLRGE 293 (346)
T ss_dssp --CHH---------HHHHH-------T--TSCEEET-------T-E----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred --CCC---------HHHHh-------c--CCeEeEC-------C-c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 110 11222 0 0112221 1 1 3568999 9999999999999999999876
Q ss_pred CCCccCcceEEEecCcCchHHHHHHHHhhhcccccc---cCCcchhhhhhHHHhhh
Q psy5911 969 KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK---DINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 969 ~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~---~~~p~~aVa~GAa~~a~ 1021 (1242)
.+.++.|+|+||+|++ +++.+++.|+. +.. ..||++|+|.|+..++.
T Consensus 294 ---~~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 294 ---VDRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp ---GGGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred ---hhcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 4578999999999999 99999999973 334 67999999999988764
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=240.06 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcch
Q psy5911 151 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGG 230 (1242)
Q Consensus 151 qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG 230 (1242)
..+.+.+|++.|||++..++.||+|||++|.... ..+..++|+|+||||||+++++- +.+.. .++..+||
T Consensus 169 ~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~-~~~~gv~vvDiGggttdisi~~~------g~~~~---~~~i~~GG 238 (419)
T 4a2a_A 169 VYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTP-EKDRGVVVVNLGYNFTGLIAYKN------GVPIK---ISYVPVGM 238 (419)
T ss_dssp HHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHH-HHHHCEEEEEECSSSEEEEEEET------TEEEE---EEEESCCH
T ss_pred HHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccc-cccCCEEEEEECCCcEEEEEEEC------CEEEE---EEecccHH
Confidence 4578899999999999999999999999986432 23456899999999999999872 33322 34567999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCC-----ceeeeeccccccCCCCCeeeEEEEcHHH
Q psy5911 231 EDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA-----EQTDINLPYITADKNGPKHLNVKITRSK 305 (1242)
Q Consensus 231 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~~~~~itr~~ 305 (1242)
++||+.|+..+.- ....||++|+.++.. ....+.++.... .....++|++
T Consensus 239 ~~it~dIa~~l~~-------------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~------~~~~~is~~~ 293 (419)
T 4a2a_A 239 KHVIKDVSAVLDT-------------------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG------NTIKTTTAKK 293 (419)
T ss_dssp HHHHHHHHHHHTC-------------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS------CSEEEEEHHH
T ss_pred HHHHHHHHHHHCC-------------------CHHHHHHHHHHhccCcccCCCCceEEEeecCC------ccceEEcHHH
Confidence 9999999875421 156899999998753 334455554321 2467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC------CcCCcceEEEecCccChHHHHHHHHHhcccccccC--------------
Q psy5911 306 LESLVEDLISKSLKPCEVALNDAKI------DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD-------------- 365 (1242)
Q Consensus 306 fe~l~~~~~~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~-------------- 365 (1242)
|.++++|.++++...+++.|+.++. ....++.|+|+||+|++|.+++++++.||.++...
T Consensus 294 l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~ 373 (419)
T 4a2a_A 294 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINAD 373 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcc
Confidence 9999999999999999999999987 34568999999999999999999999998765422
Q ss_pred ---CCcchhhHhHHHHhhhh
Q psy5911 366 ---INPDEAVAVGASVQAGV 382 (1242)
Q Consensus 366 ---~~p~~ava~GAa~~a~~ 382 (1242)
.+|..+.|.|.++++..
T Consensus 374 ~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 374 EVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp HHHTCGGGHHHHHTTCC---
T ss_pred cccCCchHHHHHHHHHHHhh
Confidence 38999999999988754
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=243.61 Aligned_cols=298 Identities=14% Similarity=0.178 Sum_probs=196.5
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|+|+||+++++.++++|++.+. ..|...+||... .+| ...+++.+...+|+++++.-
T Consensus 15 ~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~--~~g-----------~i~d~~~~~~~ik~~~~~~~------ 73 (377)
T 2ych_A 15 ALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL--MEG-----------MVAEPAALAQEIKELLLEAR------ 73 (377)
T ss_dssp CEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE--ETT-----------EESCHHHHHHHHHHHHHHHT------
T ss_pred eEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc--cCC-----------CcCCHHHHHHHHHHHHHHcC------
Confidence 579999999999999887766552 335555665432 122 34577888888999887510
Q ss_pred hhcccCceEEEEcCCCCeE-EEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHH------------
Q psy5911 725 KDIKMVPYKIVAADNGDAW-VEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ------------ 791 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~q------------ 791 (1242)
...+.. .+.-+...+. ..+....++++++... ++..++.+++.++.+++|.+|. .+.+
T Consensus 74 ~~~~~v---~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~~~v~ 144 (377)
T 2ych_A 74 TRKRYV---VTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQVQVM 144 (377)
T ss_dssp CCCCEE---EEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSEEEEE
T ss_pred CCcceE---EEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE--eCCCCCCCCcceeEEE
Confidence 001111 1111111111 1122245777777653 3557788899999999999983 3332
Q ss_pred --------HHHHHHHHHHcCCceeeeechhHHHHHHccCCC-CCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEe
Q psy5911 792 --------RQATKDAGKIAGLEVLRIINEPTAAALAYGLDK-KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLST 862 (1242)
Q Consensus 792 --------r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~-~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~ 862 (1242)
.+++++|++.|||++..++.||+|||++|+... ...+..++|+|+||||||+++++... + ..
T Consensus 145 ~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~------~---~~ 215 (377)
T 2ych_A 145 VAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDK------P---LA 215 (377)
T ss_dssp EEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTE------E---EE
T ss_pred EEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCE------E---EE
Confidence 388999999999999999999999999986432 22456789999999999999997422 2 12
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEc
Q psy5911 863 NGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT 942 (1242)
Q Consensus 863 ~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~it 942 (1242)
.++..+||.+||+.|.+.+ +.+ ...||++|+.++.............. . ......++
T Consensus 216 ~~~~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~-~---~~~~~~i~ 272 (377)
T 2ych_A 216 VRVLTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLD-F---DAERERYS 272 (377)
T ss_dssp EEEESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC---------------------------
T ss_pred EEeeechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhcccccccccccccccc-c---ccccccCC
Confidence 3567799999999998732 221 46899999998754322111000000 0 01345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCccCcceEEEecCcCchHHHHHHHHhhhcccccc
Q psy5911 943 RSKLESLVEDLISKSLKPCEVALNDA--KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 1004 (1242)
Q Consensus 943 r~~fe~~~~~~~~~~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~ 1004 (1242)
|++|+++++|.++++...|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+.++..
T Consensus 273 ~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~ 336 (377)
T 2ych_A 273 PGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEP 336 (377)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEe
Confidence 99999999999999999999999853 455667999999999999999999999999876543
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=220.43 Aligned_cols=204 Identities=25% Similarity=0.354 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEE
Q psy5911 753 PPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 832 (1242)
Q Consensus 753 ~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 832 (1242)
..+....+|+++++.++...+.....+++|+|++|+..+|++++.+++.+|+++..++.||+|++++|+... .+
T Consensus 69 d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~------~~ 142 (272)
T 3h1q_A 69 DYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIND------GI 142 (272)
T ss_dssp THHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCSS------EE
T ss_pred cHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCCC------EE
Confidence 346778899999999998888888899999999999999999999999999999999999999999998642 48
Q ss_pred EEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhh
Q psy5911 833 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKI 912 (1242)
Q Consensus 833 V~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 912 (1242)
|+|+||||++++++... .+. ......+||.+||+.+.+++. .+ ...+|++|+
T Consensus 143 viDiGggst~~~~~~~g------~~~---~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~k~ 194 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIEKG------KIT---ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETIKK 194 (272)
T ss_dssp EEEECSSCEEEEEEETT------EEE---EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHHHH
T ss_pred EEEECCCcEEEEEEECC------EEE---EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHHHH
Confidence 89999999999998732 221 346678999999999988763 11 457888988
Q ss_pred hccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHH
Q psy5911 913 ELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQK 992 (1242)
Q Consensus 913 ~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~ 992 (1242)
.++ +++++++++.+.++++...+.+.++..+ +++.|+|+||+|++|.+++
T Consensus 195 ~~~--------------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~ 244 (272)
T 3h1q_A 195 DFS--------------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSE 244 (272)
T ss_dssp SST--------------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHH
T ss_pred hcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHH
Confidence 865 5889999999999999999999998764 4789999999999999999
Q ss_pred HHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 993 MVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 993 ~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++++.|+.++..+.+|++++|+|||++|
T Consensus 245 ~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 245 EFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 9999999999999999999999999875
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=194.21 Aligned_cols=122 Identities=70% Similarity=1.080 Sum_probs=111.6
Q ss_pred ccceEEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCC
Q psy5911 387 VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPA 466 (1242)
Q Consensus 387 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 466 (1242)
.+++.+.|++|++||+++.++.|.+||+||++||++++++|++..|||+.+.|.+|||++..+.+|..||+|.|.++||+
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCCC
Q psy5911 467 PRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGL 508 (1242)
Q Consensus 467 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l 508 (1242)
|+|.++|+|+|++|.||+|+|+|.|+.||++.+++|..+.+|
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 999999999999999999999999999999999999877554
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=191.45 Aligned_cols=122 Identities=70% Similarity=1.080 Sum_probs=111.4
Q ss_pred ccceEEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCC
Q psy5911 1027 VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPA 1106 (1242)
Q Consensus 1027 ~~~~~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~ 1106 (1242)
.+++.+.|++|++||+++.++.|.++||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.++||.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCCC
Q psy5911 1107 PRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGL 1148 (1242)
Q Consensus 1107 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~l 1148 (1242)
|+|.++|+|+|++|.||+|+|+|.++.||++.+++|..+.+|
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 999999999999999999999999999999999999876543
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-22 Score=230.57 Aligned_cols=304 Identities=14% Similarity=0.136 Sum_probs=195.2
Q ss_pred cccccCCceEEEEEEEeCCcce-EEecCCCCcccceE-EEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQ-VIENSEGGRTTPSV-VGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~-ii~~~~g~~~~PS~-v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.+++|.||.++.+++...+.|. ++++--|....|+. +.+. ....++|++|.... .. ..++
T Consensus 7 ~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~-~~~~~vG~~a~~~~----~~--~~~~----------- 68 (375)
T 2fxu_A 7 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-QKDSYVGDEAQSKR----GI--LTLK----------- 68 (375)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC--------CCEEHHHHHHHT----TS--EEEE-----------
T ss_pred eEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCC-CCCeEechhHhhcC----cc--ccee-----------
Confidence 5689999999999887655544 34333332222221 1111 12467888886541 00 0011
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCC--CCcEEEEecCCCCHHHHHHHHHH-H
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQRQATKDA-G 799 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~~~~A-a 799 (1242)
+|+ ....+.--+....+++++.. +.++.. ...++||+|++++..+|+++.++ .
T Consensus 69 -------~Pi--------------~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~f 124 (375)
T 2fxu_A 69 -------YPI--------------EHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMF 124 (375)
T ss_dssp -------CSE--------------ETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred -------ccc--------------cCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHH
Confidence 111 11112222344455555542 233332 34599999999999999988876 4
Q ss_pred HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHH
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 879 (1242)
+.+|++.+.+++||+|||++|+.. ..+|+|+|+||||++.+. . + +.+....+...+||+++|+.|.+
T Consensus 125 e~~g~~~~~~~~e~~aaa~a~g~~------~~lVvDiG~gtt~v~~v~--~----G-~~~~~~~~~~~~GG~~lt~~l~~ 191 (375)
T 2fxu_A 125 ETFNVPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVTHNVPIY--E----G-YALPHAIMRLDLAGRDLTDYLMK 191 (375)
T ss_dssp HTTCCSEEEEEEHHHHHHHHTTCS------SEEEEEECSSCEEEEEEE--T----T-EECGGGCEEESCCHHHHHHHHHH
T ss_pred HhcCcceEEEccchheeeeecCCC------eEEEEEcCCCceEEeEeE--C----C-EEeccceEEeccCHHHHHHHHHH
Confidence 888999999999999999999863 468999999999998774 1 3 23333345577999999999999
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhcc----------------CCceeeEEeccccccCCCCeeeEEEEcH
Q psy5911 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS----------------NAEQTDINLPYITADKNGPKHLNVKITR 943 (1242)
Q Consensus 880 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls----------------~~~~~~i~i~~~~~~~~~~~~~~~~itr 943 (1242)
++..+. + .... .. -...+|++|+.++ ......+.+|. ...+++++
T Consensus 192 ~l~~~~---~--~~~~-~~----~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpd---------g~~i~i~~ 252 (375)
T 2fxu_A 192 ILTERG---Y--SFVT-TA----EREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD---------GQVITIGN 252 (375)
T ss_dssp HHHHHT---C--CCCS-HH----HHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTT---------SCEEEEST
T ss_pred HHHhcC---C--CCCc-HH----HHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCC---------CCEEEECh
Confidence 998751 1 1111 00 0223444444432 22233444441 13578898
Q ss_pred HHHH---HHHHHH-----HHHHHHHHHHHHHhcCC--CccCcceEEEecCcCchHHHHHHHHhhhc--------cccccc
Q psy5911 944 SKLE---SLVEDL-----ISKSLKPCEVALNDAKI--DKSKISEIILVGGQTRMPLVQKMVSEFFE--------KEVKKD 1005 (1242)
Q Consensus 944 ~~fe---~~~~~~-----~~~~~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~v~~~ 1005 (1242)
+.|+ .+++|. ...+.++|.+.|..+.. ....++.|+|+||+|++|.++++|++.++ .++..+
T Consensus 253 erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~ 332 (375)
T 2fxu_A 253 ERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332 (375)
T ss_dssp HHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECC
T ss_pred hheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcC
Confidence 8883 344543 24577888888886642 23346889999999999999999999885 344567
Q ss_pred CCcchhhhhhHHHhhhh
Q psy5911 1006 INPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 1006 ~~p~~aVa~GAa~~a~~ 1022 (1242)
.+|..+++.||+++|..
T Consensus 333 ~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 333 PERKYSVWIGGSILASL 349 (375)
T ss_dssp TTTTSHHHHHHHHHHHC
T ss_pred CCCCccEEcchHHhhCc
Confidence 89999999999999973
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=232.21 Aligned_cols=242 Identities=15% Similarity=0.135 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCC--CCcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHH-cc---CCCCCC
Q psy5911 755 QISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALA-YG---LDKKPD 827 (1242)
Q Consensus 755 ~v~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~-y~---~~~~~~ 827 (1242)
+....+++++.. ..++.. ...++||+|++|+..+|++|.+++ +.+|++.+.+++||+||+++ |. .... .
T Consensus 87 d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~-~ 162 (418)
T 1k8k_A 87 DLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER-T 162 (418)
T ss_dssp HHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC-C
T ss_pred HHHHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC-C
Confidence 334445555542 234322 357999999999999999999999 99999999999999999988 52 2212 2
Q ss_pred CcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Q psy5911 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 907 (1242)
Q Consensus 828 ~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 907 (1242)
. +.+|+|+||||||++++.- + ..+....+...+||+++|+.|.++|..++. ..+... -...+
T Consensus 163 ~-~glVvDiG~gtt~v~~v~~------G-~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~ 224 (418)
T 1k8k_A 163 L-TGTVIDSGDGVTHVIPVAE------G-YVIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETA 224 (418)
T ss_dssp C-CEEEEEESSSCEEEEEEET------T-EECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHH
T ss_pred C-eEEEEEcCCCceEEEEeEC------C-EEcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHH
Confidence 2 5699999999999999862 2 223333356789999999999999986542 111111 13466
Q ss_pred HHhhhhccCCc-----------------eeeEEeccccccCCCCeeeEEEEcHHHH---HHHHHHHH------HHHHHHH
Q psy5911 908 EKAKIELSNAE-----------------QTDINLPYITADKNGPKHLNVKITRSKL---ESLVEDLI------SKSLKPC 961 (1242)
Q Consensus 908 e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~~~~~~~~itr~~f---e~~~~~~~------~~~~~~i 961 (1242)
|++|+.++... ...+.+|. ...+....+++++++| |.++.|.+ ..+.++|
T Consensus 225 e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd----~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i 300 (418)
T 1k8k_A 225 KAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGIN----AISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVV 300 (418)
T ss_dssp HHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEEC----TTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHH
T ss_pred HHHHHhhchhcccHHHHHHhhcccccccceeEECCC----CCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHH
Confidence 77777765321 12344432 2223456789999999 55555542 5688889
Q ss_pred HHHHHhcCC--CccCcceEEEecCcCchHHHHHHHHhhhccc------------------------ccccCCcchhhhhh
Q psy5911 962 EVALNDAKI--DKSKISEIILVGGQTRMPLVQKMVSEFFEKE------------------------VKKDINPDEAVAVG 1015 (1242)
Q Consensus 962 ~~~l~~~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~------------------------v~~~~~p~~aVa~G 1015 (1242)
.++|..+.. ....++.|+|+||+|++|.++++|++.++.. +..+.+|..++..|
T Consensus 301 ~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~G 380 (418)
T 1k8k_A 301 DEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFG 380 (418)
T ss_dssp HHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHh
Confidence 999987653 3445789999999999999999998776421 23345788999999
Q ss_pred HHHhhhh
Q psy5911 1016 ASVQAGV 1022 (1242)
Q Consensus 1016 Aa~~a~~ 1022 (1242)
|+++|..
T Consensus 381 gsilasl 387 (418)
T 1k8k_A 381 GSMLAST 387 (418)
T ss_dssp HHHHTTS
T ss_pred HHHHHcC
Confidence 9999974
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=219.42 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=153.5
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCch
Q psy5911 792 RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 871 (1242)
Q Consensus 792 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~ 871 (1242)
.+.+.+|++.|||++..++.||.|||++|..... .+..++|+|+||||||+++++- +.+. ..++..+||+
T Consensus 170 v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~-~~~gv~vvDiGggttdisi~~~------g~~~---~~~~i~~GG~ 239 (419)
T 4a2a_A 170 YEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE-KDRGVVVVNLGYNFTGLIAYKN------GVPI---KISYVPVGMK 239 (419)
T ss_dssp HHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH-HHHCEEEEEECSSSEEEEEEET------TEEE---EEEEESCCHH
T ss_pred HHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc-ccCCEEEEEECCCcEEEEEEEC------CEEE---EEEecccHHH
Confidence 3578899999999999999999999999865432 3456889999999999999973 3232 2345779999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC-----ceeeEEeccccccCCCCeeeEEEEcHHHH
Q psy5911 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA-----EQTDINLPYITADKNGPKHLNVKITRSKL 946 (1242)
Q Consensus 872 ~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~~~~~itr~~f 946 (1242)
+||+.|...+.- ....||++|+.++.. ....+.++... + .....++|++|
T Consensus 240 ~it~dIa~~l~~-------------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~----~--~~~~~is~~~l 294 (419)
T 4a2a_A 240 HVIKDVSAVLDT-------------------SFEESERLIITHGNAVYNDLKEEEIQYRGLD----G--NTIKTTTAKKL 294 (419)
T ss_dssp HHHHHHHHHHTC-------------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTT----S--CSEEEEEHHHH
T ss_pred HHHHHHHHHHCC-------------------CHHHHHHHHHHhccCcccCCCCceEEEeecC----C--ccceEEcHHHH
Confidence 999999876421 156899999998752 33455555432 1 24678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC------ccCcceEEEecCcCchHHHHHHHHhhhccccccc---------------
Q psy5911 947 ESLVEDLISKSLKPCEVALNDAKID------KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD--------------- 1005 (1242)
Q Consensus 947 e~~~~~~~~~~~~~i~~~l~~~~~~------~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~--------------- 1005 (1242)
.++++|.++++.+.+++.|+.++.+ ...++.|+|+||+|++|.+++++++.||.++...
T Consensus 295 ~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~ 374 (419)
T 4a2a_A 295 SVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADE 374 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCccc
Confidence 9999999999999999999999873 4568999999999999999999999998765322
Q ss_pred --CCcchhhhhhHHHhhhhh
Q psy5911 1006 --INPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 1006 --~~p~~aVa~GAa~~a~~l 1023 (1242)
.+|..+.|.|.++++...
T Consensus 375 ~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 375 VANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp HHTCGGGHHHHHTTCC----
T ss_pred ccCCchHHHHHHHHHHHhhc
Confidence 388999999999988543
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=223.62 Aligned_cols=226 Identities=17% Similarity=0.171 Sum_probs=150.3
Q ss_pred eecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCC-CCHH--HH--HHHHH--------H----HHHcCCCeeeeec
Q psy5911 109 KKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAY-FNDS--QR--QATKD--------A----GKIAGLEVLRIIN 171 (1242)
Q Consensus 109 ~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~-f~~~--qr--~~~~~--------A----a~~AGl~~~~li~ 171 (1242)
..+++..+++.+ ..|+. +.. .+.+ .++|+++|.. |... || +++.+ + ++.+++..+.+++
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 356777666643 44443 211 1222 3699999987 6531 22 11211 1 2345567889999
Q ss_pred hHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCC
Q psy5911 172 EPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGV 251 (1242)
Q Consensus 172 Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~ 251 (1242)
||.||+++|.... ..+..++|+|+||||+|+++++ + +.+.+.+..++..+||.+||+.|.+++..+ +.
T Consensus 148 e~~aa~~~~~~~~-~~~~~~~vvDiGggttd~~v~~--~----g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~ 215 (320)
T 2zgy_A 148 ESIPAGYEVLQEL-DELDSLLIIDLGGTTLDISQVM--G----KLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RT 215 (320)
T ss_dssp SSHHHHHHHHHHS-CTTCEEEEEEECSSCEEEEEEE--G----GGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SB
T ss_pred CcHHHHHhhhccc-cCCCCEEEEEcCCCeEEEEEEe--C----CeeEEeeecCCccccHHHHHHHHHHHHHHc-----CC
Confidence 9999999986432 3467899999999999999997 2 445566667888899999999999988632 22
Q ss_pred CCCCCHHHHHHHHHHHHHH-hHHhc-CCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy5911 252 DLSGDSLAMQRLKEAAEKA-KIELS-NAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAK 329 (1242)
Q Consensus 252 ~~~~~~~~~~~L~~~~e~~-K~~Ls-~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~ 329 (1242)
++. ...+|++ |..-. ......+.++ -+.+++.+++++.++++.+.+.+.+++.
T Consensus 216 ~i~---------~~~ae~~lk~~~~~~~~~~~i~~~---------------~~~~~~~~~i~~~~~~~~~~i~~~i~~~- 270 (320)
T 2zgy_A 216 KGS---------SYLADDIIIHRKDNNYLKQRINDE---------------NKISIVTEAMNEALRKLEQRVLNTLNEF- 270 (320)
T ss_dssp GGG---------HHHHHHHHHTTTCHHHHHHHSSSS---------------CTHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCC---------HHHHHHHHHHhhhhhcccceecCc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 221 1234444 33200 0000000000 1345666677777777777777666652
Q ss_pred CCcCCcceEEEecCccChHHHHHHHHHhccc---ccccCCCcchhhHhHHHHhh
Q psy5911 330 IDKSKISEIILVGGQTRMPLVQKMVSEFFEK---EVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 330 ~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~---~~~~~~~p~~ava~GAa~~a 380 (1242)
.+++.|+|+||+|++ +++.|++.|+. ++....||++|+|+||++++
T Consensus 271 ---~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 271 ---SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp ---CCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred ---cCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 468999999999998 99999999987 57889999999999999875
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-19 Score=203.16 Aligned_cols=225 Identities=17% Similarity=0.175 Sum_probs=149.2
Q ss_pred eeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCC-CCHH--HH--HHHHH--------H----HHHcCCceeeeech
Q psy5911 750 YCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAY-FNDS--QR--QATKD--------A----GKIAGLEVLRIINE 812 (1242)
Q Consensus 750 ~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~-~~~~--qr--~~~~~--------A----a~~AGl~~~~li~E 812 (1242)
.+++..+++.+ ..|+. +.. .+.+ .++|+++|.. |... || +++.+ + ++.+++..+.+++|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 45666666543 44443 211 1222 3699999987 6541 22 21211 1 23445677899999
Q ss_pred hHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCC
Q psy5911 813 PTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVD 892 (1242)
Q Consensus 813 p~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 892 (1242)
|.||+++|.... ..+..++|+|+||||+|+++++ . +...+.+..++..+||.+||+.|.+++.++ +.+
T Consensus 149 ~~aa~~~~~~~~-~~~~~~~vvDiGggttd~~v~~--~----g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~ 216 (320)
T 2zgy_A 149 SIPAGYEVLQEL-DELDSLLIIDLGGTTLDISQVM--G----KLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTK 216 (320)
T ss_dssp SHHHHHHHHHHS-CTTCEEEEEEECSSCEEEEEEE--G----GGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBG
T ss_pred cHHHHHhhhccc-cCCCCEEEEEcCCCeEEEEEEe--C----CeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCC
Confidence 999999986432 2456899999999999999997 2 344566667788899999999999988642 222
Q ss_pred CCCCHHHHHHHHHHHHHh-hhhc-cCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5911 893 LSGDSLAMQRLKEAAEKA-KIEL-SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKI 970 (1242)
Q Consensus 893 ~~~~~~~~~~L~~~~e~~-K~~L-s~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~ 970 (1242)
+. ...+|++ |..- .......+.. .-+++++.+++++.++++.+.+.+.+++.
T Consensus 217 i~---------~~~ae~~lk~~~~~~~~~~~i~~---------------~~~~~~~~~~i~~~~~~~~~~i~~~i~~~-- 270 (320)
T 2zgy_A 217 GS---------SYLADDIIIHRKDNNYLKQRIND---------------ENKISIVTEAMNEALRKLEQRVLNTLNEF-- 270 (320)
T ss_dssp GG---------HHHHHHHHHTTTCHHHHHHHSSS---------------SCTHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CC---------HHHHHHHHHHhhhhhcccceecC---------------chhhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 21 1234444 3320 0000000000 01345666677777777777777777652
Q ss_pred CccCcceEEEecCcCchHHHHHHHHhhhcc---cccccCCcchhhhhhHHHhh
Q psy5911 971 DKSKISEIILVGGQTRMPLVQKMVSEFFEK---EVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 971 ~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~---~v~~~~~p~~aVa~GAa~~a 1020 (1242)
.+++.|+|+||+|++ +++.+++.|+. ++....||++|+|+||++++
T Consensus 271 --~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 271 --SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp --CCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred --cCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 468999999999998 99999999987 57889999999999999875
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-19 Score=207.03 Aligned_cols=213 Identities=19% Similarity=0.175 Sum_probs=91.5
Q ss_pred CcEEEEecCCCCHHHHHHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCc
Q psy5911 137 EKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGET 215 (1242)
Q Consensus 137 ~~~vitVPa~f~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~ 215 (1242)
..+++|+|+.++..+|+++.+++ +.+|++.+.+++||.|||++++. .+.+|+|+|+|||+++.+.- +
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~------~~~lVVDiG~g~T~v~pv~~------G 172 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL------LTGVVVDSGDGVTHICPVYE------G 172 (394)
T ss_dssp -------------------------------------------------------CCEEEECSSCEEEECEET------T
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC------ceEEEEEcCCCceEeeeeEC------C
Confidence 45999999999999999998865 78899999999999999999875 34588899999999987742 2
Q ss_pred eEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc----------------e
Q psy5911 216 QFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----------------Q 279 (1242)
Q Consensus 216 ~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~ 279 (1242)
.. +........+||+++|+.|.++|..+. +......+ ...+|++|+.++... .
T Consensus 173 ~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~ 241 (394)
T 1k8k_B 173 FS-LPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241 (394)
T ss_dssp EE-CSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTC
T ss_pred EE-cccceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCc
Confidence 11 211123357899999999999987541 11111112 235666777665321 1
Q ss_pred eeeeccccccCCCCCeeeEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCC--cCCcceEEEecCccChHH
Q psy5911 280 TDINLPYITADKNGPKHLNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKID--KSKISEIILVGGQTRMPL 349 (1242)
Q Consensus 280 ~~i~i~~~~~~~~~~~~~~~~itr~~fe---~l~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~ip~ 349 (1242)
..+.+|. ...++|++++|+ -+++|. ...+.+.|.+.|..+..+ ..-.+.|+|+||+|++|.
T Consensus 242 ~~~~lpd---------g~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 242 ESYTLPD---------GRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp EEEECTT---------SCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTT
T ss_pred eEEECCC---------CCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCccccccc
Confidence 1222221 125778888773 334442 235777888888877543 223678999999999999
Q ss_pred HHHHHHHhccc-----------------cc--ccCCCcchhhHhHHHHhhh
Q psy5911 350 VQKMVSEFFEK-----------------EV--KKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 350 v~~~l~~~f~~-----------------~~--~~~~~p~~ava~GAa~~a~ 381 (1242)
+.++|++.++. ++ ..+.+|..++.+|++++|.
T Consensus 313 ~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 313 LPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred HHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 99999887743 22 2356778999999999886
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=184.71 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCcEE-EEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCCCCCcEEE
Q psy5911 114 PQISAEILKKMKSTAETFLNEKIEKAV-ITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIV 192 (1242)
Q Consensus 114 ~~v~a~~L~~l~~~a~~~~~~~~~~~v-itVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vl 192 (1242)
.++++.+|+.+++.+... ..++. +++..+ ...++......|+||+|+++++..... ....
T Consensus 36 ~e~a~~vl~~~~~~a~~~----~~~~~~~a~t~~------------~~~a~~~~~~~Vne~~aha~a~~~~~~---~~~~ 96 (276)
T 4ehu_A 36 TTGPSRVLEKLYGKTGLA----REDIKKVVVTGY------------GRMNYSDADKQISELSCHARGVNFIIP---ETRT 96 (276)
T ss_dssp SSHHHHHHHHHHHHHCCC----GGGEEEEEEEST------------TGGGCCSCSEECCHHHHHHHHHHHHST---TCCE
T ss_pred HHHHHHHHHHHHHHCCCc----chhccccccCch------------HHHHhhCCCcccchHHHHHHHHHHhCC---CCCe
Confidence 356667777777766332 22222 222221 124677888999999999998865433 2236
Q ss_pred EEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhH
Q psy5911 193 VYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKI 272 (1242)
Q Consensus 193 V~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 272 (1242)
|+|+|||+++++++. .+ +.++.....+....|+.+|+..+++++.-.+..... .+..++.
T Consensus 97 vl~lgG~~~~~~~~~-~~----g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~~---------------~~~~a~~ 156 (276)
T 4ehu_A 97 IIDIGGQDAKVLKLD-NN----GRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGS---------------ISMNSQN 156 (276)
T ss_dssp EEEECSSCEEEEEEC-TT----SCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHHH---------------HHTTCSS
T ss_pred EEEEcCCCceEEEEE-ec----CceEEEEeCCCcCcchhhHHHHHHHHhccChhhhHH---------------HHhcCCC
Confidence 789999999999884 22 678888888889999999999999887543321100 0000000
Q ss_pred --HhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHH
Q psy5911 273 --ELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLV 350 (1242)
Q Consensus 273 --~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v 350 (1242)
.+++....-...+.... .-.....++++..+.+.+.+.+....... ..++.|+|+||.+++|.|
T Consensus 157 ~~~i~~~~~~f~~s~~~~~----------~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~l 222 (276)
T 4ehu_A 157 EVSISSTCTVFAESEVISH----------LSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGI 222 (276)
T ss_dssp CCCCCCCSHHHHHHHHHHH----------HHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHH
T ss_pred CCCcCCccchhhhhHHHHh----------hhccccHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHH
Confidence 00000000000000000 00001123455555555554444443332 357889999999999999
Q ss_pred HHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 351 QKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 351 ~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
++.+++.||.++..+.+|++++|+|||++|....
T Consensus 223 r~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 223 VRAMAREINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986543
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-17 Score=188.82 Aligned_cols=214 Identities=19% Similarity=0.179 Sum_probs=90.7
Q ss_pred CcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCc
Q psy5911 777 EKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGET 855 (1242)
Q Consensus 777 ~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~ 855 (1242)
..+++|+|+.++..+|+++.+++ +.+|++.+.+++||.||+++++.. ..+|+|+|+|||+++.+.- +
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~------~~lVVDiG~g~T~v~pv~~------G 172 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLL------TGVVVDSGDGVTHICPVYE------G 172 (394)
T ss_dssp -------------------------------------------------------CCEEEECSSCEEEECEET------T
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCc------eEEEEEcCCCceEeeeeEC------C
Confidence 35999999999999999998854 888999999999999999998762 4588899999999988752 2
Q ss_pred eEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC----------------ce
Q psy5911 856 QFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA----------------EQ 919 (1242)
Q Consensus 856 ~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------------~~ 919 (1242)
. .+........+||+++|+.|.++|..+. +......+. ..+|++|+.+... ..
T Consensus 173 ~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~ 241 (394)
T 1k8k_B 173 F-SLPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLALETTVLV 241 (394)
T ss_dssp E-ECSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTC
T ss_pred E-EcccceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhccCCcCc
Confidence 1 1221223457899999999999987641 111111122 3445555554321 11
Q ss_pred eeEEeccccccCCCCeeeEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHhcCCC--ccCcceEEEecCcCchHH
Q psy5911 920 TDINLPYITADKNGPKHLNVKITRSKLE---SLVEDL-----ISKSLKPCEVALNDAKID--KSKISEIILVGGQTRMPL 989 (1242)
Q Consensus 920 ~~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~-----~~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~ip~ 989 (1242)
..+.+|. ...+++++++|+ -+++|. ...+.+.|.+.|..+..+ ..-.+.|+|+||+|++|.
T Consensus 242 ~~~~lpd---------g~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 242 ESYTLPD---------GRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp EEEECTT---------SCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTT
T ss_pred eEEECCC---------CCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCccccccc
Confidence 2233321 135778888773 334442 234777888888877543 223678999999999999
Q ss_pred HHHHHHhhhcc-----------------cc--cccCCcchhhhhhHHHhhhh
Q psy5911 990 VQKMVSEFFEK-----------------EV--KKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 990 v~~~l~~~f~~-----------------~v--~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+.++|++.++. ++ ..+.+|..++..|++++|..
T Consensus 313 ~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 313 LPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 99999887753 22 23567789999999998863
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=170.56 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=139.0
Q ss_pred CcEEEEecCCCCHHHH-HHHHHHHHHcCC------------CeeeeechHHHHHHHhccCCCC-----CCcEEEEEEeCC
Q psy5911 137 EKAVITVPAYFNDSQR-QATKDAGKIAGL------------EVLRIINEPTAAALAYGLDKKP-----DDRIIVVYDLGG 198 (1242)
Q Consensus 137 ~~~vitVPa~f~~~qr-~~~~~Aa~~AGl------------~~~~li~Ep~AAal~y~~~~~~-----~~~~vlV~D~Gg 198 (1242)
..+++.+|..+...+| +++++++...+- ..+.+++||.||+++++.+... .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3789999999988887 589998875543 5678999999999999765421 367899999999
Q ss_pred cceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc
Q psy5911 199 GTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 278 (1242)
Q Consensus 199 gT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 278 (1242)
||+|++++. + +.+ +...++...+||..+++.+.+++.+++. +..+. . ...++-+.
T Consensus 194 gTtd~~v~~--~----~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~------ 248 (355)
T 3js6_A 194 GTTIIDTYQ--N----MKR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE------ 248 (355)
T ss_dssp SCEEEEEEE--T----TEE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC------
T ss_pred CcEEEEEEc--C----CEE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc------
Confidence 999999983 2 211 1112233467999999999999877642 11111 1 11111110
Q ss_pred eeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHH--HHHHHHH
Q psy5911 279 QTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL--VQKMVSE 356 (1242)
Q Consensus 279 ~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~--v~~~l~~ 356 (1242)
+.....+ ..-.+.+ .+.+++.++++++++.+.+++.+.+ ...++.|+|+||++.++. |++.|++
T Consensus 249 -------~~~~~~~--~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~ 314 (355)
T 3js6_A 249 -------YKQCKLN--QKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSD 314 (355)
T ss_dssp ----------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSS
T ss_pred -------ccccccc--ccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHH
Confidence 0000000 0001122 3456777888888888888887764 356899999999999998 9999999
Q ss_pred hcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 357 FFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 357 ~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
.|+.. .||..|+|+|+..++..+.+
T Consensus 315 ~~~~~----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 315 VFEKA----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp CEECC----SSGGGHHHHHHHHHHHHHHH
T ss_pred HCCCC----CCcHHHHHHHHHHHHHHHHh
Confidence 88542 89999999999999877654
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=163.08 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=124.8
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecC---CcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCC
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED---NRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTD 80 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 80 (1242)
..|+||+||.++.+++..++.|..+ +||+|+.... ...+||.++.... +.
T Consensus 24 ~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~---------------- 76 (498)
T 3qb0_A 24 SAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RK---------------- 76 (498)
T ss_dssp SCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CT----------------
T ss_pred CeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cC----------------
Confidence 3589999999999998766655433 5999988643 2466776532110 00
Q ss_pred hHHHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcC--CCC-cEEEEecCCCCHHHHHHHHH
Q psy5911 81 EIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNE--KIE-KAVITVPAYFNDSQRQATKD 157 (1242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~--~~~-~~vitVPa~f~~~qr~~~~~ 157 (1242)
.-.+...+.+..+.-.+....+++|+.... ++. .-. .+++|.|.......|++|.+
T Consensus 77 ------------------~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~---L~v~p~~~~pvlltep~~n~~~~Re~~~e 135 (498)
T 3qb0_A 77 ------------------DYELKPIIENGLVIDWDTAQEQWQWALQNE---LYLNSNSGIPALLTEPVWNSTENRKKSLE 135 (498)
T ss_dssp ------------------TEEEEESEETTEESCHHHHHHHHHHHHHHT---SCCSCCTTCCEEEEECTTCCHHHHHHHHH
T ss_pred ------------------ceEEeccCcCCEEccHHHHHHHHHHHHHhh---hCCCcccCCceEEEeCCCCcHHHHHHHHH
Confidence 001122234455666788888888876532 332 123 69999999999999999998
Q ss_pred HH-HHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHH
Q psy5911 158 AG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236 (1242)
Q Consensus 158 Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~ 236 (1242)
.+ +.+|++.+.++.+|.||+++++.. +-||+|+|+|+++++.+.-+. .+.....-..+||+++|+.
T Consensus 136 ilFE~f~vpav~l~~~~vlalya~G~~------tglVVDiG~g~T~vvPI~~G~-------~l~~ai~rl~vgG~~lt~~ 202 (498)
T 3qb0_A 136 VLLEGMQFEACYLAPTSTCVSFAAGRP------NCLVVDIGHDTCSVSPIVDGM-------TLSKSTRRNFIAGKFINHL 202 (498)
T ss_dssp HHHTTSCCSEEEEEEHHHHHHHHHTCS------SEEEEEECSSCEEEEEEETTE-------ECGGGCEEESCSHHHHHHH
T ss_pred HHHhhcCCCeEeecchHHHHHHHcCCC------eEEEEEcCCCcEEEEEEeCCE-------EccccceeccccHHHHHHH
Confidence 65 789999999999999999999762 238889999999999985221 1111111235799999999
Q ss_pred HHHHHHH
Q psy5911 237 IINHLIY 243 (1242)
Q Consensus 237 l~~~l~~ 243 (1242)
|.++|..
T Consensus 203 L~~lL~~ 209 (498)
T 3qb0_A 203 IKKALEP 209 (498)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 9999864
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-14 Score=159.01 Aligned_cols=205 Identities=18% Similarity=0.254 Sum_probs=138.7
Q ss_pred cEEEEecCCCCHHHH-HHHHHHHHHcCC------------ceeeeechhHHHHHHccCCCCC-----CCcEEEEEeeCCC
Q psy5911 778 KAVITVPAYFNDSQR-QATKDAGKIAGL------------EVLRIINEPTAAALAYGLDKKP-----DDRIIVVYDLGGG 839 (1242)
Q Consensus 778 ~~VitVPa~~~~~qr-~~~~~Aa~~AGl------------~~~~li~Ep~AAal~y~~~~~~-----~~~~vlV~D~Ggg 839 (1242)
.+++.+|..+...+| +++++++...+- ..+.+++||.||+++++.+..+ .+..++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 789999999988887 589998875543 4678999999999999765421 3678899999999
Q ss_pred ceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce
Q psy5911 840 TFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ 919 (1242)
Q Consensus 840 T~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 919 (1242)
|||++++. + +.+ +...++...+||..+++.+.+++.+++. +..+. . ...++.+.
T Consensus 195 Ttd~~v~~--~----~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~------- 248 (355)
T 3js6_A 195 TTIIDTYQ--N----MKR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE------- 248 (355)
T ss_dssp CEEEEEEE--T----TEE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC-------
T ss_pred cEEEEEEc--C----CEE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc-------
Confidence 99999993 2 211 1112334568999999999999887642 11111 1 11111111
Q ss_pred eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHH--HHHHHHhh
Q psy5911 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL--VQKMVSEF 997 (1242)
Q Consensus 920 ~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~--v~~~l~~~ 997 (1242)
+. ....+ ..-.+.+ .+.+++.++++++++.+.+++.+.+ ++.++.|+|+||+|.++. +.+.+++.
T Consensus 249 --~~----~~~~~--~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~ 315 (355)
T 3js6_A 249 --YK----QCKLN--QKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDV 315 (355)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSC
T ss_pred --cc----ccccc--ccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHH
Confidence 00 00000 0001122 2456777888888888888887764 356899999999999998 88999998
Q ss_pred hcccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 998 FEKEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 998 f~~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
|+.. .||..|+|+|+..++..+.+
T Consensus 316 ~~~~----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 316 FEKA----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp EECC----SSGGGHHHHHHHHHHHHHHH
T ss_pred CCCC----CCcHHHHHHHHHHHHHHHHh
Confidence 8542 89999999999999877654
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-14 Score=169.34 Aligned_cols=253 Identities=15% Similarity=0.083 Sum_probs=159.5
Q ss_pred cCeecChHHHHHHHHHHHHHHHHhHhcCC--CCcEEEEecCCCCHHHHHHHHHHH-HHcCCCeeeeechHHHHHHHhccC
Q psy5911 107 KDKKLAPPQISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLD 183 (1242)
Q Consensus 107 ~~~~~~~~~v~a~~L~~l~~~a~~~~~~~--~~~~vitVPa~f~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~ 183 (1242)
.+..+.-.+....+++++... .++.. -..+++|.|...+...|+.+.+.+ +.+|++.+.++.+|.+|+++.+..
T Consensus 95 ~~GvI~dwd~~e~iw~~~~~~---~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~ 171 (427)
T 3dwl_A 95 RHGQIENWDHMERFWQQSLFK---YLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTS 171 (427)
T ss_dssp ETTEECCHHHHHHHHHHHHHT---TSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGS
T ss_pred ccCeeccHHHHHHHHHHHHhH---hhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCc
Confidence 344556677777777776542 23322 347999999999999999999887 789999999999999999998854
Q ss_pred CC--CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH
Q psy5911 184 KK--PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQ 261 (1242)
Q Consensus 184 ~~--~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~ 261 (1242)
.. ....+-||+|+|+|+++++.+.-.. .+........+||+++|+.|.++|..+... .
T Consensus 172 ~~~~~~~~tglVVDiG~g~T~v~PV~~G~-------~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~-------------~ 231 (427)
T 3dwl_A 172 SKVTDRSLTGTVVDSGDGVTHIIPVAEGY-------VIGSSIKTMPLAGRDVTYFVQSLLRDRNEP-------------D 231 (427)
T ss_dssp TTTCSCCCCEEEEEESSSCEEEEEEETTE-------ECGGGCEEESCCHHHHHHHHHHTTC-------------------
T ss_pred ccccCCCceEEEEECCCCceEEEEEECCE-------EehhhheeccccHHHHHHHHHHHHHHcCCC-------------c
Confidence 21 1134568889999999999984221 111111123679999999999988655431 0
Q ss_pred HHHHHHHHHhHHhcCCcee---ee--------eccccccCCCCCeeeEEEEcHHHHH---HHHHHH------HHHHHHHH
Q psy5911 262 RLKEAAEKAKIELSNAEQT---DI--------NLPYITADKNGPKHLNVKITRSKLE---SLVEDL------ISKSLKPC 321 (1242)
Q Consensus 262 ~L~~~~e~~K~~Ls~~~~~---~i--------~i~~~~~~~~~~~~~~~~itr~~fe---~l~~~~------~~~i~~~i 321 (1242)
.=...+|.+|+.++..... ++ .+.........+....+.|..++|. -+++|- ...+.+++
T Consensus 232 ~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i 311 (427)
T 3dwl_A 232 SSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELV 311 (427)
T ss_dssp --CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHH
T ss_pred hhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHH
Confidence 0134567777776543210 00 0000000000112235677777763 345552 23577788
Q ss_pred HHHHHHcCCCc--CCcceEEEecCccChHHHHHHHHHhcc----------------------cccccCCCcchhhHhHHH
Q psy5911 322 EVALNDAKIDK--SKISEIILVGGQTRMPLVQKMVSEFFE----------------------KEVKKDINPDEAVAVGAS 377 (1242)
Q Consensus 322 ~~~l~~~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~----------------------~~~~~~~~p~~ava~GAa 377 (1242)
.+.|..+..+. .-...|+|+||+|.+|.+.++|++.+. .++..+.++..++=.|++
T Consensus 312 ~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGS 391 (427)
T 3dwl_A 312 DNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGS 391 (427)
T ss_dssp HHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCce
Confidence 88887654321 114679999999999999999886541 123345577889999999
Q ss_pred Hhhhh
Q psy5911 378 VQAGV 382 (1242)
Q Consensus 378 ~~a~~ 382 (1242)
++|..
T Consensus 392 ilasl 396 (427)
T 3dwl_A 392 LLAQT 396 (427)
T ss_dssp HHHHS
T ss_pred eeccc
Confidence 99863
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-14 Score=165.28 Aligned_cols=204 Identities=16% Similarity=0.172 Sum_probs=140.6
Q ss_pred CcEEEEecCCCCH--HHHHHHHHHHHHc--------C------CCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcc
Q psy5911 137 EKAVITVPAYFND--SQRQATKDAGKIA--------G------LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGT 200 (1242)
Q Consensus 137 ~~~vitVPa~f~~--~qr~~~~~Aa~~A--------G------l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT 200 (1242)
..+++++|..+.. .+|+.+++....- | +..+.+++||.+|.+.+. ....+..++|+|+||||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--~~~~~~~v~vvDiGggT 183 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--ENFKNKNVAVIDFGGLN 183 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--CCCTTCEEEEEEECSSC
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--hhhccCCEEEEEeCCCc
Confidence 4789999988774 3677777766521 1 134778999999887763 22356789999999999
Q ss_pred eeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCcee
Q psy5911 201 FDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT 280 (1242)
Q Consensus 201 ~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~ 280 (1242)
+|++++.- +.+ +....+...+||.++++.+.+++.. .+++..+... .+|++|+. .. .
T Consensus 184 td~~v~~~------g~~-~~~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~~---------~~e~i~~~-g~---~ 240 (329)
T 4apw_A 184 MGFSLYRN------CVV-NPSERFIEEHGVKDLIIRVGDALTD---LNNGNLITNE---------QAESALNN-GY---M 240 (329)
T ss_dssp EEEEEEET------TEE-CGGGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTSB---------TTTTCSSS-CS---S
T ss_pred EEEEEEEC------CEE-eeccccchhhHHHHHHHHHHHHHHh---hccCCCCCHH---------HHHHHHhc-CC---c
Confidence 99999972 222 2222344568999999999887765 0333333211 23344432 11 0
Q ss_pred eeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhccc
Q psy5911 281 DINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 360 (1242)
Q Consensus 281 ~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~ 360 (1242)
. ...+ . ..+..+.+++.+++.++++.+.+++. +.+++.++.|+|+||++.+ +.+.|++.|+.
T Consensus 241 ----~-~g~~------~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~~ 302 (329)
T 4apw_A 241 ----K-KGGE------I-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYPN 302 (329)
T ss_dssp ----C-EECT------T-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHSTT
T ss_pred ----c-cCCc------c-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcCC
Confidence 0 0000 1 13456778888888888888777766 2445558999999999998 56999999997
Q ss_pred ccccCCCcchhhHhHHHHhhhhh
Q psy5911 361 EVKKDINPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 361 ~~~~~~~p~~ava~GAa~~a~~l 383 (1242)
++....||..|+|+|+..++...
T Consensus 303 ~v~v~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 303 NSIITNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp CEECCSSGGGHHHHHHHHHHHHH
T ss_pred CCEecCCChhhHHHHHHHHHhhh
Confidence 78889999999999998877543
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-14 Score=157.66 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=145.8
Q ss_pred CCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEE-EEecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHH
Q psy5911 739 NGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAV-ITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 817 (1242)
Q Consensus 739 ~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~V-itVPa~~~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAa 817 (1242)
++.+....-.....|.++++.+|+.+++.+.. ...+.. +++..+ . ..++......|+||+|++
T Consensus 21 ~~~il~~~~~~~g~~~e~a~~vl~~~~~~a~~----~~~~~~~~a~t~~-~-----------~~a~~~~~~~Vne~~aha 84 (276)
T 4ehu_A 21 GEDIVASETISSGTGTTGPSRVLEKLYGKTGL----AREDIKKVVVTGY-G-----------RMNYSDADKQISELSCHA 84 (276)
T ss_dssp TTEEEEEEEESCCTTSSHHHHHHHHHHHHHCC----CGGGEEEEEEEST-T-----------GGGCCSCSEECCHHHHHH
T ss_pred CCeEEEEEEecCCCCHHHHHHHHHHHHHHCCC----cchhccccccCch-H-----------HHHhhCCCcccchHHHHH
Confidence 33343333223345677888899888887633 222332 222222 1 246777889999999999
Q ss_pred HHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCH
Q psy5911 818 LAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDS 897 (1242)
Q Consensus 818 l~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~ 897 (1242)
+++..... ....|+|+|||+++++++.. + +.++.....+....|+.+|+..+.+++.-.|.....
T Consensus 85 ~a~~~~~~---~~~~vl~lgG~~~~~~~~~~-~----g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~~------- 149 (276)
T 4ehu_A 85 RGVNFIIP---ETRTIIDIGGQDAKVLKLDN-N----GRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGS------- 149 (276)
T ss_dssp HHHHHHST---TCCEEEEECSSCEEEEEECT-T----SCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHHH-------
T ss_pred HHHHHhCC---CCCeEEEEcCCCceEEEEEe-c----CceEEEEeCCCcCcchhhHHHHHHHHhccChhhhHH-------
Confidence 88765433 22367899999999998842 2 678888888888899999999999887544432110
Q ss_pred HHHHHHHHHHHHhhh--hccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCc
Q psy5911 898 LAMQRLKEAAEKAKI--ELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKI 975 (1242)
Q Consensus 898 ~~~~~L~~~~e~~K~--~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i 975 (1242)
.+..++. .+++....-...+.... .-.....++++..+...+.+.+....... ..+
T Consensus 150 --------~~~~a~~~~~i~~~~~~f~~s~~~~~----------~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~ 207 (276)
T 4ehu_A 150 --------ISMNSQNEVSISSTCTVFAESEVISH----------LSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQ 207 (276)
T ss_dssp --------HHTTCSSCCCCCCCSHHHHHHHHHHH----------HHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCC
T ss_pred --------HHhcCCCCCCcCCccchhhhhHHHHh----------hhccccHHHHHHHHHHHHHHHHHHHHHhc----ccC
Confidence 0001110 01100000000000000 00001124455555555555544444433 357
Q ss_pred ceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 976 SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 976 ~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
+.|+|+||.+++|.|++.+++.||.++..+.+|++++|+|||++|....
T Consensus 208 ~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 208 RNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred CeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999996544
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=142.97 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=117.9
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecC---CcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCCh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTED---NRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDE 721 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~---~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~ 721 (1242)
.+.+|.|+.++.+.+...+.|.. .+||+|+.... ...+||.++.... +.+
T Consensus 25 ~iVID~GS~~~kaG~ag~~~P~~--------v~PSvVg~~~~~~~~~~~vG~e~~~~~---r~~---------------- 77 (498)
T 3qb0_A 25 AVVIDPGSYTTNIGYSGSDFPQS--------ILPSVYGKYTADEGNKKIFSEQSIGIP---RKD---------------- 77 (498)
T ss_dssp CEEEECCSSEEEEEETTCSSCSE--------EEESEEEEESSCSSCCEECCTTGGGSC---CTT----------------
T ss_pred eEEEECCCcEEEEEECCCCCeee--------ecCceeEEeccCCCccEEEecHHHhcC---cCc----------------
Confidence 45789999888887765444433 36999988642 2456776532110 000
Q ss_pred hHHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCC--CCC-cEEEEecCCCCHHHHHHHHHH
Q psy5911 722 IVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNE--KIE-KAVITVPAYFNDSQRQATKDA 798 (1242)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~--~~~-~~VitVPa~~~~~qr~~~~~A 798 (1242)
+ .+...+....+.--+....+++|+... .++. .-. .+++|.|.......|+.|.++
T Consensus 78 ----------l--------~l~~Pi~~GvI~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~ei 136 (498)
T 3qb0_A 78 ----------Y--------ELKPIIENGLVIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEV 136 (498)
T ss_dssp ----------E--------EEEESEETTEESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHH
T ss_pred ----------e--------EEeccCcCCEEccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHH
Confidence 0 011112233334445556666666543 2332 123 689999999999999999996
Q ss_pred H-HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHH
Q psy5911 799 G-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 877 (1242)
Q Consensus 799 a-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l 877 (1242)
+ +..|++.+.++.+|.||+++++... -||+|+|+|+|+++.+.-. +.+........+||+++|+.|
T Consensus 137 lFE~f~vpav~l~~~~vlalya~G~~t------glVVDiG~g~T~vvPI~~G-------~~l~~ai~rl~vgG~~lt~~L 203 (498)
T 3qb0_A 137 LLEGMQFEACYLAPTSTCVSFAAGRPN------CLVVDIGHDTCSVSPIVDG-------MTLSKSTRRNFIAGKFINHLI 203 (498)
T ss_dssp HHTTSCCSEEEEEEHHHHHHHHHTCSS------EEEEEECSSCEEEEEEETT-------EECGGGCEEESCSHHHHHHHH
T ss_pred HHhhcCCCeEeecchHHHHHHHcCCCe------EEEEEcCCCcEEEEEEeCC-------EEccccceeccccHHHHHHHH
Confidence 5 8899999999999999999998631 3888999999999998522 111111122468999999999
Q ss_pred HHHHHH
Q psy5911 878 INHLIY 883 (1242)
Q Consensus 878 ~~~l~~ 883 (1242)
.++|..
T Consensus 204 ~~lL~~ 209 (498)
T 3qb0_A 204 KKALEP 209 (498)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 999864
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=151.30 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCC--CCcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHccCCCC--CC
Q psy5911 753 PPQISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKK--PD 827 (1242)
Q Consensus 753 ~~~v~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~--~~ 827 (1242)
--+....+++|+.. ..++.. -..+++|.|...+...|+.|.+.+ +..|++.+.++.+|.+|+++.+.... ..
T Consensus 101 dwd~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~ 177 (427)
T 3dwl_A 101 NWDHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDR 177 (427)
T ss_dssp CHHHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSC
T ss_pred cHHHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCC
Confidence 33455556655543 233332 246999999999999999999987 78999999999999999999885421 11
Q ss_pred CcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Q psy5911 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 907 (1242)
Q Consensus 828 ~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 907 (1242)
..+-||+|+|+|+|+++.+.-. +.+........+||+++|+.|.++|..+..... =...+
T Consensus 178 ~~tglVVDiG~g~T~v~PV~~G-------~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~~~-------------~~~~~ 237 (427)
T 3dwl_A 178 SLTGTVVDSGDGVTHIIPVAEG-------YVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDS-------------SLKTA 237 (427)
T ss_dssp CCCEEEEEESSSCEEEEEEETT-------EECGGGCEEESCCHHHHHHHHHHTTC---------------------CHHH
T ss_pred CceEEEEECCCCceEEEEEECC-------EEehhhheeccccHHHHHHHHHHHHHHcCCCch-------------hHHHH
Confidence 2346888999999999998422 111111122468999999999998876543200 02345
Q ss_pred HHhhhhccCCcee-----------eEEeccccccCCCCeeeEEEEcHHHHH---HHHHHH------HHHHHHHHHHHHHh
Q psy5911 908 EKAKIELSNAEQT-----------DINLPYITADKNGPKHLNVKITRSKLE---SLVEDL------ISKSLKPCEVALND 967 (1242)
Q Consensus 908 e~~K~~Ls~~~~~-----------~i~i~~~~~~~~~~~~~~~~itr~~fe---~~~~~~------~~~~~~~i~~~l~~ 967 (1242)
+.+|+.+..-... ...+.........+....+++..++|. -+++|- ...+.+++.+.|.+
T Consensus 238 ~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~ 317 (427)
T 3dwl_A 238 ERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQS 317 (427)
T ss_dssp HHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHT
T ss_pred HHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHh
Confidence 6666665432100 000000000000112235667777763 344552 24577888888886
Q ss_pred cCCCc--cCcceEEEecCcCchHHHHHHHHhhhc----------------------ccccccCCcchhhhhhHHHhhhh
Q psy5911 968 AKIDK--SKISEIILVGGQTRMPLVQKMVSEFFE----------------------KEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 968 ~~~~~--~~i~~ViLvGG~s~ip~v~~~l~~~f~----------------------~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+..+. .-...|+|+||+|.+|.+.++|++.+. .++..+.++..++=.|++++|..
T Consensus 318 c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 318 SPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp SCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred CCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 65321 114679999999999999999886551 12334567788999999999864
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-12 Score=143.64 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=140.2
Q ss_pred CcEEEEecCCCCH--HHHHHHHHHHHHc--------C------CceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCc
Q psy5911 777 EKAVITVPAYFND--SQRQATKDAGKIA--------G------LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGT 840 (1242)
Q Consensus 777 ~~~VitVPa~~~~--~qr~~~~~Aa~~A--------G------l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT 840 (1242)
..+++++|..+.. .+|+.+++....- | +..+.+++||.+|.+.+. ....+..++|+|+||||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--~~~~~~~v~vvDiGggT 183 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--ENFKNKNVAVIDFGGLN 183 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--CCCTTCEEEEEEECSSC
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--hhhccCCEEEEEeCCCc
Confidence 3789999998774 3677787766521 2 134678999998887763 22356788999999999
Q ss_pred eEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHH-HhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCce
Q psy5911 841 FDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY-EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ 919 (1242)
Q Consensus 841 ~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 919 (1242)
||++++.- +.+ +...++...+||.++++.+.+++.. ++ +..+.. ..+|++|+. ..
T Consensus 184 td~~v~~~------g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~----g~~i~~---------~~~e~i~~~-g~--- 239 (329)
T 4apw_A 184 MGFSLYRN------CVV-NPSERFIEEHGVKDLIIRVGDALTDLNN----GNLITN---------EQAESALNN-GY--- 239 (329)
T ss_dssp EEEEEEET------TEE-CGGGCEEESCCHHHHHHHHHTSSSSCSS----CSCTTS---------BTTTTCSSS-CS---
T ss_pred EEEEEEEC------CEE-eeccccchhhHHHHHHHHHHHHHHhhcc----CCCCCH---------HHHHHHHhc-CC---
Confidence 99999983 222 2223345668999999999887765 33 332221 133444432 11
Q ss_pred eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhc
Q psy5911 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 999 (1242)
Q Consensus 920 ~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~ 999 (1242)
.. .+.+ . ..+..+.+++.+++.++.+.+.+++. . .+++.++.|+|+||+|.+ +.+.+++.|+
T Consensus 240 ~~-------~g~~----~-~~~~~~~i~~~~~e~~~~I~~~i~~~-~---~~~~~~~~IvltGGGA~l--~~~~l~~~~~ 301 (329)
T 4apw_A 240 MK-------KGGE----I-DTESSTVIKKVKEKFLKDAIKLIEKR-G---FKLDQLDSLIFIGGTTQK--LKEQISKTYP 301 (329)
T ss_dssp SC-------EECT----T-CCSTTHHHHHHHHHHHHHHHHHHHHH-T---CCTTSCSEEEEESTTHHH--HHHHHHHHST
T ss_pred cc-------cCCc----c-hhHHHHHHHHHHHHHHHHHHHHHHHc-C---CCHHHccEEEEECChHHH--HHHHHHHHcC
Confidence 00 0000 0 13456788888888888888877766 2 344558999999999998 5699999999
Q ss_pred ccccccCCcchhhhhhHHHhhhh
Q psy5911 1000 KEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 1000 ~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
.++....||..|+|+|+..++..
T Consensus 302 ~~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 302 NNSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp TCEECCSSGGGHHHHHHHHHHHH
T ss_pred CCCEecCCChhhHHHHHHHHHhh
Confidence 77888999999999999887754
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=135.87 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=80.3
Q ss_pred HHHHHHH-hHhcCCCC-----cEEEEecCCCCHHHHHHHHHH-HHHcCCCeeeeechHHHHHHHhccCCCCCCcEEEEEE
Q psy5911 123 KMKSTAE-TFLNEKIE-----KAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYD 195 (1242)
Q Consensus 123 ~l~~~a~-~~~~~~~~-----~~vitVPa~f~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D 195 (1242)
.|++++- ..++.... .+++|.|..++...|+.|.+. .+..|++.+.++.++.+|++++|.. +-||+|
T Consensus 179 ~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~------tglVVD 252 (593)
T 4fo0_A 179 VIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS------STCIVD 252 (593)
T ss_dssp HHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS------EEEEEE
T ss_pred HHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC------ceEEEE
Confidence 3444432 35654433 499999999999999998775 5677999999999999999999753 458889
Q ss_pred eCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHH
Q psy5911 196 LGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244 (1242)
Q Consensus 196 ~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~ 244 (1242)
+|.++|.|+-|.=+-.-.....+ ..+||.++++.|.++|..+
T Consensus 253 iG~~~T~v~PV~dG~~l~~~~~r-------l~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 253 VGDQKTSVCCVEDGVSHRNTRLC-------LAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp ECSSCEEEEEEESSCBCGGGCEE-------ESCCHHHHHHHHHHHHHHT
T ss_pred eCCCceeeeeeECCEEehhheEE-------ecccHHHHHHHHHHHHHhc
Confidence 99999999987522111112222 3579999999999888654
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.9e-11 Score=133.34 Aligned_cols=198 Identities=21% Similarity=0.207 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHc-CC--CeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCC
Q psy5911 150 SQRQATKDAGKIA-GL--EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 226 (1242)
Q Consensus 150 ~qr~~~~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~ 226 (1242)
.+-+.+.+|.+.+ |+ ++-. .||.||+++...+.. .+..++++|+||||||+|++.-.. ...... .
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-~eLGvaiIDmGGGTTd~sVf~~G~-----lv~a~~----i 435 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-TTRPLAILDLGAGSTDASIINPKG-----DIIATH----L 435 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECTTC-----CEEEEE----E
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCc-----EEEEEE----e
Confidence 4477889999999 99 6666 999999999866544 566678889999999999985322 222222 2
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc----------eeeeec--cccccCCCCC
Q psy5911 227 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----------QTDINL--PYITADKNGP 294 (1242)
Q Consensus 227 ~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~~~~~ 294 (1242)
..||++++..|..-|.-. + +..||++|+ ..... ...+.+ +.+....-.
T Consensus 436 p~gG~~VT~DIA~~Lgt~-----------d-------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~- 495 (610)
T 2d0o_A 436 AGAGDMVTMIIARELGLE-----------D-------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFA- 495 (610)
T ss_dssp ECSHHHHHHHHHHHHTCC-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-
T ss_pred ccchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-
Confidence 359999998887655311 0 347899998 53221 112333 222211000
Q ss_pred e------eeEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CcCCcceEEEecCccChHHHHHHHHHhcc
Q psy5911 295 K------HLNVKITRSK--LESLVEDLISKSLKP--CEVALNDAKI-----DKSKISEIILVGGQTRMPLVQKMVSEFFE 359 (1242)
Q Consensus 295 ~------~~~~~itr~~--fe~l~~~~~~~i~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~ip~v~~~l~~~f~ 359 (1242)
. ..-..| +.+ +|+ ++-+-+++.+. +...|+..+. +..+|..|+|+||+|.++.+.++.++.|+
T Consensus 496 Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~ 573 (610)
T 2d0o_A 496 RVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALA 573 (610)
T ss_dssp CEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTT
T ss_pred eeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhC
Confidence 1 112355 566 666 55555554443 3333554332 34567999999999999999999999997
Q ss_pred c-ccc-------cCCCcchhhHhHHHHhhh
Q psy5911 360 K-EVK-------KDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 360 ~-~~~-------~~~~p~~ava~GAa~~a~ 381 (1242)
. +++ ....|..|+|.|.+++.+
T Consensus 574 ~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 574 HYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp TSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred cCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 6 432 245899999999988754
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=129.95 Aligned_cols=196 Identities=19% Similarity=0.167 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHc-CC--CeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCC
Q psy5911 151 QRQATKDAGKIA-GL--EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTF 227 (1242)
Q Consensus 151 qr~~~~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~ 227 (1242)
+-+.+.+|.+.+ |+ ++-. .||.||+++...+.. .+..++++|+||||||+|++.-.. ...... ..
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-~elGvaiIDmGgGTTd~sVf~~g~-----lv~a~~----ip 438 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-CAAPLAILDLGAGSTDAAIVNAEG-----QITAVH----LA 438 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECSSS-----CEEEEE----EE
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCc-----EEEEEE----ec
Confidence 356788899999 99 6666 999999999866544 566678889999999999996332 222222 23
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCc----------eeeeec--cccccCCCCCe
Q psy5911 228 LGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE----------QTDINL--PYITADKNGPK 295 (1242)
Q Consensus 228 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~~~~~~ 295 (1242)
.||++++..|..-|.-. + +..||++|+ ..... ...+.+ +.+....-. .
T Consensus 439 ~gG~~VT~DIA~~Lg~~-----------d-------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~-R 498 (607)
T 1nbw_A 439 GAGNMVSLLIKTELGLE-----------D-------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFA-K 498 (607)
T ss_dssp CCHHHHHHHHHHHHTCS-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-C
T ss_pred cchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-e
Confidence 59999998887655311 0 347899998 53221 112333 222211000 1
Q ss_pred ------eeEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCC-----cCCcceEEEecCccChHHHHHHHHHhccc
Q psy5911 296 ------HLNVKITRSK--LESLVEDLISKSLKP--CEVALNDAKID-----KSKISEIILVGGQTRMPLVQKMVSEFFEK 360 (1242)
Q Consensus 296 ------~~~~~itr~~--fe~l~~~~~~~i~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~ip~v~~~l~~~f~~ 360 (1242)
..-..| +.+ +|+ ++-+-+++.+. +...|+..+.. ..+|..|+|+||+|.++.+.++.++.|+.
T Consensus 499 ~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~ 576 (607)
T 1nbw_A 499 VVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSH 576 (607)
T ss_dssp EEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHT
T ss_pred eecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCc
Confidence 112355 566 666 55555554443 45557776653 34579999999999999999999999966
Q ss_pred -ccc-------cCCCcchhhHhHHHHhh
Q psy5911 361 -EVK-------KDINPDEAVAVGASVQA 380 (1242)
Q Consensus 361 -~~~-------~~~~p~~ava~GAa~~a 380 (1242)
+++ ....|..|+|.|.+++.
T Consensus 577 ~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 577 YGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp TTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred CCeEEecCCccccCCchHHHHHHHHHhh
Confidence 432 24589999999998864
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.3e-10 Score=126.48 Aligned_cols=196 Identities=21% Similarity=0.211 Sum_probs=124.8
Q ss_pred HHHHHHHHHHc-CC--ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCC
Q psy5911 792 RQATKDAGKIA-GL--EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL 868 (1242)
Q Consensus 792 r~~~~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~l 868 (1242)
-+.+.+|.+.+ |+ ++-. .||.||+++.......+ --++++||||||||+|++.-.. . ..... ...
T Consensus 370 m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~e-LGvaiIDmGGGTTd~sVf~~G~----l-v~a~~----ip~ 437 (610)
T 2d0o_A 370 MAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTT-RPLAILDLGAGSTDASIINPKG----D-IIATH----LAG 437 (610)
T ss_dssp HHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCC-SSEEEEEECSSEEEEEEECTTC----C-EEEEE----EEC
T ss_pred HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCc-CCeEEEEeCCCcceEEEEcCCc----E-EEEEE----ecc
Confidence 46677888888 99 5555 99999999998776533 3456669999999999996432 1 11111 235
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC----------ceeeEEe--ccccccCCCCe-
Q psy5911 869 GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA----------EQTDINL--PYITADKNGPK- 935 (1242)
Q Consensus 869 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~~~~~~~~- 935 (1242)
||++++..|..-|.-. + +..||+.|+ .... +.-.+.+ +.+....-. .
T Consensus 438 gG~~VT~DIA~~Lgt~-----------d-------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~-Rv 497 (610)
T 2d0o_A 438 AGDMVTMIIARELGLE-----------D-------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFA-RV 497 (610)
T ss_dssp SHHHHHHHHHHHHTCC-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-CE
T ss_pred chHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-ee
Confidence 9999998887654211 0 347888888 4221 1112333 322211100 1
Q ss_pred -----eeEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHhcCC-----CccCcceEEEecCcCchHHHHHHHHhhhcc-
Q psy5911 936 -----HLNVKITRSK--LESLVEDLISKSLKP--CEVALNDAKI-----DKSKISEIILVGGQTRMPLVQKMVSEFFEK- 1000 (1242)
Q Consensus 936 -----~~~~~itr~~--fe~~~~~~~~~~~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~- 1000 (1242)
..-..| +.+ +|+ ++-+-+++.+. +..+|+..+. +..+|..|+|+||+|.++.+.++.++.|+.
T Consensus 498 ~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y 575 (610)
T 2d0o_A 498 CVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY 575 (610)
T ss_dssp EEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS
T ss_pred ecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC
Confidence 112355 566 666 55444444443 2333444332 245679999999999999999999999976
Q ss_pred ccc-------ccCCcchhhhhhHHHhhh
Q psy5911 1001 EVK-------KDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 1001 ~v~-------~~~~p~~aVa~GAa~~a~ 1021 (1242)
++. ..-.|..|+|.|.+++.+
T Consensus 576 ~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 576 RLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp SCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred CeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 432 245899999999988754
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-10 Score=125.75 Aligned_cols=194 Identities=19% Similarity=0.167 Sum_probs=123.9
Q ss_pred HHHHHHHHHc-CC--ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCC
Q psy5911 793 QATKDAGKIA-GL--EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 869 (1242)
Q Consensus 793 ~~~~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lG 869 (1242)
+.+.+|.+.+ |+ ++-. .||.||+++...+...+ --++++||||||||+|++.-.. . ..... ...|
T Consensus 373 ~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~e-lGvaiIDmGgGTTd~sVf~~g~----l-v~a~~----ip~g 440 (607)
T 1nbw_A 373 QVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCA-APLAILDLGAGSTDAAIVNAEG----Q-ITAVH----LAGA 440 (607)
T ss_dssp CCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCC-SSEEEEEECSSEEEEEEECSSS----C-EEEEE----EECC
T ss_pred HHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCc-CCeEEEEeCCCcceEEEEcCCc----E-EEEEE----eccc
Confidence 4566777777 88 5545 99999999998776533 3456669999999999997443 1 11111 2359
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC----------ceeeEEe--ccccccCCCCe--
Q psy5911 870 GEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA----------EQTDINL--PYITADKNGPK-- 935 (1242)
Q Consensus 870 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~~~~~~~~-- 935 (1242)
|++++..|..-|.-. + +..||+.|+ .... +.-.+.+ +.+....-. .
T Consensus 441 G~~VT~DIA~~Lg~~-----------d-------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~-R~~ 500 (607)
T 1nbw_A 441 GNMVSLLIKTELGLE-----------D-------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFA-KVV 500 (607)
T ss_dssp HHHHHHHHHHHHTCS-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-CEE
T ss_pred hHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-eee
Confidence 999998887654211 0 347888888 4221 1112333 322211100 1
Q ss_pred ----eeEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHhcCCC-----ccCcceEEEecCcCchHHHHHHHHhhhcc-c
Q psy5911 936 ----HLNVKITRSK--LESLVEDLISKSLKP--CEVALNDAKID-----KSKISEIILVGGQTRMPLVQKMVSEFFEK-E 1001 (1242)
Q Consensus 936 ----~~~~~itr~~--fe~~~~~~~~~~~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~ip~v~~~l~~~f~~-~ 1001 (1242)
..-..| +.+ +|+ ++-+-+++.+. +..+|+..+.. ..+|..|+|+||+|.++.+.++.++.|+. +
T Consensus 501 ~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~ 578 (607)
T 1nbw_A 501 YIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYG 578 (607)
T ss_dssp EEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTT
T ss_pred cccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCC
Confidence 112345 555 666 55444444443 45557766543 34569999999999999999999999976 4
Q ss_pred cc-------ccCCcchhhhhhHHHhh
Q psy5911 1002 VK-------KDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 1002 v~-------~~~~p~~aVa~GAa~~a 1020 (1242)
+. ..-.|..|+|.|.+++.
T Consensus 579 VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 579 VVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp CEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred eEEecCCccccCCchHHHHHHHHHhh
Confidence 32 24589999999998764
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-08 Score=121.06 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=83.0
Q ss_pred HHHHHHHHH-hHhCCCCC-----cEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHccCCCCCCCcEEEE
Q psy5911 761 LKKMKSTAE-TFLNEKIE-----KAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVV 833 (1242)
Q Consensus 761 L~~l~~~a~-~~~~~~~~-----~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV 833 (1242)
+..|.+++- ..++.... .+++|.|..++...|+.|.+. .+..|++.+.++.++.+|++++|.. +-+|
T Consensus 177 ~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~------tglV 250 (593)
T 4fo0_A 177 IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS------STCI 250 (593)
T ss_dssp HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS------EEEE
T ss_pred HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC------ceEE
Confidence 344555543 45664433 399999999999999998775 5778999999999999999999764 4588
Q ss_pred EeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHH
Q psy5911 834 YDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884 (1242)
Q Consensus 834 ~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 884 (1242)
+|+|.++|.|+-+.=.-. +..+.-...+||.++++.|.++|..+
T Consensus 251 VDiG~~~T~v~PV~dG~~-------l~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 251 VDVGDQKTSVCCVEDGVS-------HRNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp EEECSSCEEEEEEESSCB-------CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred EEeCCCceeeeeeECCEE-------ehhheEEecccHHHHHHHHHHHHHhc
Confidence 899999999998863211 11111223579999999999988754
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=94.54 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=68.3
Q ss_pred hhHHHHHhhhhHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1169 KFEELVKCKNEADSTISIVKKNLKD--ENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1169 ~~~~~~~~~n~le~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
+.|++.++||.||+|+|.+++.|.+ +..++++++++.|..+|+++.+||+.+ +.++|+.++++|+..+.||+.|
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k 81 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISG 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999976 788999999999999999999999986 4899999999999999999864
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-08 Score=91.56 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=66.7
Q ss_pred hHHHHHhhhhHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1170 FEELVKCKNEADSTISIVKKNLKD--ENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1170 ~~~~~~~~n~le~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
.|++.++||.||+|||.+++.|.+ +...++++++++|..+|+++++||+++ +.++|+.++++|+..+.+|+.|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k 90 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISK 90 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999976 778899999999999999999999965 7899999999999999999753
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-06 Score=89.00 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhh
Q psy5911 309 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 309 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l 383 (1242)
++..+++.+...+.+.++..+. .+.|+++||.++.|.+++.+++.++.++..+.+|..+.|+|||++|...
T Consensus 187 i~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 187 IIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 3344444444444444443221 3679999999999999999999999999888888889999999998754
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-07 Score=85.96 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=62.7
Q ss_pred HHHhhhhHHHHHHHHHHhhh--hccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1173 LVKCKNEADSTISIVKKNLK--DENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1173 ~~~~~n~le~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
+.++||.||+|||.+++.|. .+...+++++|++|..+|+++++||+++ +.++|+.++++|+..+.+|+.|
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~ 76 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 76 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999997 6788999999999999999999999855 6789999999999999999753
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-05 Score=91.53 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCC-----CcEEEEecCCCCHHHHHHHHHHH-HHcCCCeeeeechHHHHHHHhccCCCCC
Q psy5911 114 PQISAEILKKMKSTAETFLNEKI-----EKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPD 187 (1242)
Q Consensus 114 ~~v~a~~L~~l~~~a~~~~~~~~-----~~~vitVPa~f~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~ 187 (1242)
.+....++.|+... ..++... ..+++|.|..++...|+.|.+.+ +..|++.+.++.+|.||+++++.
T Consensus 196 WD~mE~Iw~y~f~~--~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----- 268 (655)
T 4am6_A 196 ISDVTKLLEHALNS--ETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----- 268 (655)
T ss_dssp HHHHHHHHHHHHBS--SSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHhcc--ccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----
Confidence 34555555555431 1344332 46999999999999999998887 56899999999999999999874
Q ss_pred CcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy5911 188 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 267 (1242)
Q Consensus 188 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 267 (1242)
..+-||+|+|+|+++++.+.-+. .+.....-..+||+++|..|.++|..+--.....++ ... .=...+
T Consensus 269 ~ttGLVVDiG~g~T~VvPV~eG~-------vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f--~t~---~e~eiV 336 (655)
T 4am6_A 269 STSTCVVNIGAAETRIACVDEGT-------VLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKI--DSK---HGWLLA 336 (655)
T ss_dssp SSCEEEEEECSSCEEEEEEETTE-------ECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCT--TSH---HHHHHH
T ss_pred CCceEEEcCCCceEEEEEEeCCE-------EEhhheeeecchHHHHHHHHHHHHHHcCCCccccCC--CCc---chHHHH
Confidence 23458889999999999984221 111111124689999999999998764210000111 111 124568
Q ss_pred HHHhHHhcCCceeeeecc--ccc--cCCCCCeeeEEEEcHHHHH
Q psy5911 268 EKAKIELSNAEQTDINLP--YIT--ADKNGPKHLNVKITRSKLE 307 (1242)
Q Consensus 268 e~~K~~Ls~~~~~~i~i~--~~~--~~~~~~~~~~~~itr~~fe 307 (1242)
+.+|+.++......+.+. .+. ........+.+.+--+.|.
T Consensus 337 rdIKEk~CyVs~~Di~~q~~~f~~r~P~~~~~ky~i~vgdErfl 380 (655)
T 4am6_A 337 ERLKKNFTTFQDADVAVQLYNFMNRSPNQPTEKYEFKLFDEVML 380 (655)
T ss_dssp HHHHHHHCCCCGGGCCSEEEEEEECCSSSCEEEEEEEESSHHHH
T ss_pred HHHHHheEEEcccchhhhhhcceeccCCCCCcceEEEECCeehh
Confidence 899999887643333211 110 0111124566777777765
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5.2e-05 Score=89.92 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=87.8
Q ss_pred CcEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCc
Q psy5911 777 EKAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGET 855 (1242)
Q Consensus 777 ~~~VitVPa~~~~~qr~~~~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~ 855 (1242)
..+++|.|..++...|+.|.+.+ +..|++.+.++.+|.||++++|. ...-+|+|+|+|+|+++.+.-.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl-----~ttGLVVDiG~g~T~VvPV~eG------ 290 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI-----STSTCVVNIGAAETRIACVDEG------ 290 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----SSCEEEEEECSSCEEEEEEETT------
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----CCceEEEcCCCceEEEEEEeCC------
Confidence 36999999999999999998877 57899999999999999999875 1235888999999999998521
Q ss_pred eEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCC
Q psy5911 856 QFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 917 (1242)
Q Consensus 856 ~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 917 (1242)
+.+........+||++++..|.++|..+--.....++. ... =...++.+|+.++.-
T Consensus 291 -~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~--t~~---e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 291 -TVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKID--SKH---GWLLAERLKKNFTTF 346 (655)
T ss_dssp -EECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTT--SHH---HHHHHHHHHHHHCCC
T ss_pred -EEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCC--Ccc---hHHHHHHHHHheEEE
Confidence 11111112246899999999999987652100001111 111 134677788887654
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=78.79 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhh
Q psy5911 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 948 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l 1023 (1242)
+++..+++.+...+.+.+...+. .+.|+++||.++.|.+++.+.+.++.++..+.+|+.+.|+|||++|...
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 33444444444444444543321 3679999999999999999999999999888888889999999998653
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0077 Score=72.11 Aligned_cols=207 Identities=15% Similarity=0.153 Sum_probs=110.9
Q ss_pred HHHHHHcCC----ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCce-EEEE------EecC
Q psy5911 796 KDAGKIAGL----EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQ-FEVL------STNG 864 (1242)
Q Consensus 796 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~-~~v~------~~~~ 864 (1242)
.++++..|| +++....+..||+++.+.... + .+++-+|.+++-..+..-...++.+. +... ...+
T Consensus 219 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~---g-~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 294 (504)
T 3ll3_A 219 TEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDS---D-HCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGG 294 (504)
T ss_dssp HHHHHHHTCCTTCEEEEEEEHHHHHHHTTTCCST---T-EEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEccHHHHHHHhCCCCCC---C-cEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEEe
Confidence 355666655 567777888888888865432 2 23445676665444332111111111 1110 0112
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEecccccc--------CCC-Ce
Q psy5911 865 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITAD--------KNG-PK 935 (1242)
Q Consensus 865 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~--------~~~-~~ 935 (1242)
....||. .++|+.+.|.... .. ...+...++++.. .....+.+|++... ..+ ..
T Consensus 295 ~~~~~G~-----~~~W~~~~~~~~~-----~~---~~~~~~~a~~~~~----g~~gl~~~P~~~Ger~P~~d~~arg~~~ 357 (504)
T 3ll3_A 295 PVNNGGI-----VFNWARQTLFDAD-----ET---PQDFLDVAQTAPA----GSRNLIFLPYLGGERAPIWDANARGSFV 357 (504)
T ss_dssp EESCSHH-----HHHHHHHHHTCTT-----CC---HHHHHHHHHTSCT----TGGGCEEECCTTCBCTTTCBTTCCEEEE
T ss_pred ehhhHHH-----HHHHHHHHhccch-----hH---HHHHHHHHhcCCC----CCCCeEEecCccCCCCCCCCCccCeEEE
Confidence 2344665 4467777764211 11 1222222222211 12233455554311 111 01
Q ss_pred eeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhh
Q psy5911 936 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015 (1242)
Q Consensus 936 ~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~G 1015 (1242)
.++..-++.++-..+-+-+.-....+-+.|++.+. .++.|.++||+++++.+.+++.+.||.++..+ .+.|+.|+|
T Consensus 358 Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alG 433 (504)
T 3ll3_A 358 GLTRMHQKPEMARAVIEGIIFNLYDAASNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLA 433 (504)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHH
Confidence 12223356666554333333223333344454442 58899999999999999999999999998764 466799999
Q ss_pred HHHhhhhhcccc
Q psy5911 1016 ASVQAGVLSGVV 1027 (1242)
Q Consensus 1016 Aa~~a~~l~~~~ 1027 (1242)
||+.|+.-.|..
T Consensus 434 aA~lA~~a~G~~ 445 (504)
T 3ll3_A 434 AMFLARQALGLN 445 (504)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCcc
Confidence 999998766643
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.007 Score=72.59 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=112.0
Q ss_pred HHHHHHcCC----ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEE-EeecC-CCceEEEEEec------
Q psy5911 796 KDAGKIAGL----EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE-IANVD-GETQFEVLSTN------ 863 (1242)
Q Consensus 796 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~-~~~~~-~~~~~~v~~~~------ 863 (1242)
.++++..|| +++....+..||+++.+.... +. +++-+|.+++-..+.. -...+ +.+.+...+..
T Consensus 223 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~--g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
T 3hz6_A 223 ALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDD--ED--AYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTL 298 (511)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCST--TC--EEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEE
T ss_pred HHHHHhhCCCCCCeEEEECchHHHHHHhCCCCCC--Cc--EEEEecchhhheeecCCeecccCCCCceEEEEEecCCceE
Confidence 356666665 566677888889988876432 22 3335676666555544 11111 21222111111
Q ss_pred --CCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccccC----CC---C
Q psy5911 864 --GDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADK----NG---P 934 (1242)
Q Consensus 864 --~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~----~~---~ 934 (1242)
+....|| ..++|+++.|... . .. .+..|.+.++++..... .....+.+|++.... +. +
T Consensus 299 ~~g~~~~~G-----~~~~W~~~~~~~~--~--~~---~~~~l~~~a~~~~~g~~-~~~gl~~~P~~~Ger~P~~d~~arg 365 (511)
T 3hz6_A 299 QVAPVLNAG-----NILQWALTLVGHR--P--GE---DCAEYFHMAAAEVQGVT-VPDGLLFVPYLHAERCPVELPAPRG 365 (511)
T ss_dssp EEEEESSSH-----HHHHHHGGGGTCC--T--TS---CSHHHHHHHHHHHTTCC-CCTTCEEEEESSCBCSSSCBSSCEE
T ss_pred EEeehhhHH-----HHHHHHHHHhccc--c--cc---cHHHHHHHHHhCCCCCC-CCCCEEEeCCCCCCCCCCCCCccce
Confidence 2223455 4566776665410 0 01 12344445555433200 011223444332110 00 0
Q ss_pred --eeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhh
Q psy5911 935 --KHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAV 1012 (1242)
Q Consensus 935 --~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aV 1012 (1242)
..++..-+|.++-.. +++.+.-.++..++...- .. ++.|.++||+++++.+.+++.+.+|.++.....+.|+.
T Consensus 366 ~~~Gl~~~~~~~~l~RA---vlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~ 440 (511)
T 3hz6_A 366 ALLGVTGATTRAQILLA---VLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHP 440 (511)
T ss_dssp EEECCCTTCCHHHHHHH---HHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHH
T ss_pred EEEcCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCch
Confidence 012223456666543 333333333333332221 23 78999999999999999999999999982345588999
Q ss_pred hhhHHHhhhhhcccc
Q psy5911 1013 AVGASVQAGVLSGVV 1027 (1242)
Q Consensus 1013 a~GAa~~a~~l~~~~ 1027 (1242)
|+|||+.|+.-.|..
T Consensus 441 alGaA~lA~~a~G~~ 455 (511)
T 3hz6_A 441 LRGLAALAAVELEWS 455 (511)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999998776643
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0091 Score=71.70 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=105.3
Q ss_pred HcCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEE-EEeecCCCceEEEE----------EecCCCCCC
Q psy5911 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVI-EIANVDGETQFEVL----------STNGDTFLG 869 (1242)
Q Consensus 801 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~-~~~~~~~~~~~~v~----------~~~~~~~lG 869 (1242)
-.|.+++....+..||+++.+.... +. +++-+|.+++-.... .-......+.+... ...+....|
T Consensus 255 ~~g~pV~~g~~D~~aa~~g~g~~~~--g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (520)
T 4e1j_A 255 GAAIPILGVAGDQQAATIGQACFKP--GM--LKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVA 330 (520)
T ss_dssp TSCCBEEEECCHHHHHHHHTTCCST--TC--EEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCS
T ss_pred CCCCeEEEECCcHHHHHHhCCCCCC--Cc--EEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhH
Confidence 3688898888999999999875432 22 333456554332222 00001111222111 111223345
Q ss_pred chHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccc--------cCCC-CeeeEEE
Q psy5911 870 GEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA--------DKNG-PKHLNVK 940 (1242)
Q Consensus 870 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~--------~~~~-~~~~~~~ 940 (1242)
|. .++|+.+.+.... ....+...++... .....+.+|++.- +..+ ...++..
T Consensus 331 G~-----~~~W~~~~~~~~~---------~~~~l~~~a~~~~-----~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~ 391 (520)
T 4e1j_A 331 GA-----AVQWLRDGLKVIK---------AAPDTGSLAESAD-----PSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRN 391 (520)
T ss_dssp HH-----HHHHHHHTTCCC--------------CHHHHHTSC-----TTCCCEEECCTTCBCTTTCBTTCCCEEEEECTT
T ss_pred HH-----HHHHHHHHcCCcc---------cHHHHHHHHhcCC-----CCCcEEEEcCccCCCCCCCCCCCCEEEecccCC
Confidence 54 6777777653210 1112222232221 1223345565421 1111 1112223
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 941 ITRSKLESLVEDLISKSLKPCEVALNDAKI-DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 941 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
-+|.++-..+-+-+.--...+-+.|++.+. .. .++.|.++||.+++|.+.+++.+.+|.++..+ .+.|+.|+|||+.
T Consensus 392 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~l 469 (520)
T 4e1j_A 392 TGPAEFARAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWL 469 (520)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHH
Confidence 457666553333322222223333443310 01 47889999999999999999999999998754 4677999999999
Q ss_pred hhhhccccc
Q psy5911 1020 AGVLSGVVK 1028 (1242)
Q Consensus 1020 a~~l~~~~~ 1028 (1242)
|+.-.|..+
T Consensus 470 A~~a~G~~~ 478 (520)
T 4e1j_A 470 AGSRAGVWP 478 (520)
T ss_dssp HHHHHTSSC
T ss_pred HHHHcCCcC
Confidence 988776433
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0058 Score=73.20 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhh
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
++.++-..+-+-+.-....+-+.|++.+. .++.|.++||.+++|.+.+++.+.+|.++..+ .+.|+.|+|||+.|+
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~ 470 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQAA 470 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHHH
Confidence 66666554333332222333334555443 47899999999999999999999999998754 456789999999998
Q ss_pred hhccc
Q psy5911 1022 VLSGV 1026 (1242)
Q Consensus 1022 ~l~~~ 1026 (1242)
.-.+.
T Consensus 471 ~a~G~ 475 (515)
T 3i8b_A 471 WVLSG 475 (515)
T ss_dssp HHHHC
T ss_pred HHcCC
Confidence 76653
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.025 Score=61.33 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=55.6
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecC-ccChHHHHHHHHHhc---ccccccCCCcchhhHhH
Q psy5911 301 ITRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGG-QTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVG 375 (1242)
Q Consensus 301 itr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~ip~v~~~l~~~f---~~~~~~~~~p~~ava~G 375 (1242)
.+++++-. ++.-+.+++..+...+.+..+ ++.|+++|| .+..|.+++.+++.+ +.++..+.+|..+.|.|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 45665543 445555555555444444443 456999999 899999999999885 67888899999999999
Q ss_pred HHHhh
Q psy5911 376 ASVQA 380 (1242)
Q Consensus 376 Aa~~a 380 (1242)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99874
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.023 Score=63.26 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=40.5
Q ss_pred cceEEEecC-ccChHHHHHHHHHhcc------cccccCCCcchhhHhHHHHhh
Q psy5911 335 ISEIILVGG-QTRMPLVQKMVSEFFE------KEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 335 i~~ViLvGG-~s~ip~v~~~l~~~f~------~~~~~~~~p~~ava~GAa~~a 380 (1242)
++.|+++|| .+..|.+++.|++.++ .++..+.+|..+-|.|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 456999999 9999999999999874 577888899999999999975
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.041 Score=59.66 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=53.7
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecC-cCchHHHHHHHHhhh---cccccccCCcchhhhhh
Q psy5911 941 ITRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGG-QTRMPLVQKMVSEFF---EKEVKKDINPDEAVAVG 1015 (1242)
Q Consensus 941 itr~~fe~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~ip~v~~~l~~~f---~~~v~~~~~p~~aVa~G 1015 (1242)
.+++++-. ++.-+.+++..+...+.+..+ ++.|+++|| .+..|.+++.+.+.+ +.++..+.+|..+.|.|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 35555443 334444444444443334333 456999999 899999999999875 67888899999999999
Q ss_pred HHHhh
Q psy5911 1016 ASVQA 1020 (1242)
Q Consensus 1016 Aa~~a 1020 (1242)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99875
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.037 Score=61.70 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=40.7
Q ss_pred cceEEEecC-cCchHHHHHHHHhhhc------ccccccCCcchhhhhhHHHhh
Q psy5911 975 ISEIILVGG-QTRMPLVQKMVSEFFE------KEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 975 i~~ViLvGG-~s~ip~v~~~l~~~f~------~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++.|+++|| .+..|.+++.|++.++ .++..+.+|..+-|.|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 456999999 9999999999999874 578888999999999999975
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.01 Score=72.06 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=62.1
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhh
Q psy5911 938 NVKITRSKLESLVEDLISKSLKPCEV---ALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAV 1014 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~~~~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~ 1014 (1242)
+..-+|.++-.++.-+++.+.-.++. .|++.+ ..++.|.++||.+++|.+.+++.+.||.++..+ ...++.|+
T Consensus 406 ~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g---~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~-~~~e~~al 481 (554)
T 3l0q_A 406 KLSTTPEDMALRYLATIQALALGTRHIIETMNQNG---YNIDTMMASGGGTKNPIFVQEHANATGCAMLLP-EESEAMLL 481 (554)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---CCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEE-SCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEeCccccCHHHHHHHHHhhCCeEEec-CCCcchHH
Confidence 34457888844344444444433333 344443 357899999999999999999999999998764 45679999
Q ss_pred hHHHhhhhhccc
Q psy5911 1015 GASVQAGVLSGV 1026 (1242)
Q Consensus 1015 GAa~~a~~l~~~ 1026 (1242)
|||+.|+.-.|.
T Consensus 482 GAA~lA~~a~G~ 493 (554)
T 3l0q_A 482 GSAMMGTVAAGV 493 (554)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHcCC
Confidence 999999877664
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.019 Score=69.11 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=60.5
Q ss_pred EEcHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 940 KITRSKLESLVEDLI-SKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 940 ~itr~~fe~~~~~~~-~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
.-+|.++-..+-+-+ -.+...++..-+..+. .++.|.++||+++++.+.+++.+.||.++..+ ...|+.|+|||+
T Consensus 370 ~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~-~~~E~~alGAA~ 445 (526)
T 3ezw_A 370 GVNANHIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERP-EVREVTALGAAY 445 (526)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeC-CCCchHHHHHHH
Confidence 346676655433322 2333333333234553 57899999999999999999999999998754 456789999999
Q ss_pred hhhhhcccccc
Q psy5911 1019 QAGVLSGVVKD 1029 (1242)
Q Consensus 1019 ~a~~l~~~~~~ 1029 (1242)
.|+.-.|..++
T Consensus 446 lA~~a~G~~~~ 456 (526)
T 3ezw_A 446 LAGLAVGFWQN 456 (526)
T ss_dssp HHHHHTTSSSC
T ss_pred HHHHHhCCCCC
Confidence 99987775443
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.015 Score=69.39 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=57.4
Q ss_pred EcHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 941 ITRSKLESLV-EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 941 itr~~fe~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
-++.++-..+ +.+.-.+... -+.+++.+ ..++.|.++||.++++.+.+++.+.+|.++..+..++.+.|+|||+.
T Consensus 356 ~~~~~~~rAvlEgia~~~~~~-~~~l~~~g---~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~l 431 (484)
T 2itm_A 356 HGPNELARAVLEGVGYALADG-MDVVHACG---IKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHHTTT---CCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHcC---CCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHH
Confidence 3566654433 2222222222 23334433 35788999999999999999999999999987766665699999999
Q ss_pred hhhhccc
Q psy5911 1020 AGVLSGV 1026 (1242)
Q Consensus 1020 a~~l~~~ 1026 (1242)
|+.-.+.
T Consensus 432 A~~~~g~ 438 (484)
T 2itm_A 432 AQIAANP 438 (484)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 9876653
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.023 Score=68.06 Aligned_cols=211 Identities=20% Similarity=0.194 Sum_probs=109.8
Q ss_pred HHHHHHcCC----ceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEec-CCC-C-C
Q psy5911 796 KDAGKIAGL----EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTN-GDT-F-L 868 (1242)
Q Consensus 796 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~-~~~-~-l 868 (1242)
.++++..|| .+..-..+..||+++.+.... +. +++-+|.+++-..+..-...++ . +...+.. .+. . .
T Consensus 225 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~---g~-~~~s~GTs~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~ 298 (508)
T 3ifr_A 225 AEAAALTGLPTGLPVYGGAADHIASALAAGITRP---GD-VLLKFGGAGDIIVASATAKSDP-R-LYLDYHLVPGLYAPN 298 (508)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCST---TE-EEEEESSSEEEEECBSCCCCBT-T-BBCCBCSSTTCBCCE
T ss_pred HHHHHHhCCCCCCeEEEECchHHHHHHhCCCCCC---Cc-EEEEechhhhheeeCCCcccCC-C-cceeeeecCCceEEe
Confidence 356666665 466677888889998876432 22 3335666655444332110011 1 1111110 010 0 1
Q ss_pred CchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccc--------cCCC-CeeeEE
Q psy5911 869 GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA--------DKNG-PKHLNV 939 (1242)
Q Consensus 869 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~--------~~~~-~~~~~~ 939 (1242)
|+..---..++|+++.|.. .+ .+ ..+..|.+.+++... .....+.+|.+.- +..+ ...++.
T Consensus 299 g~~~~~G~~~~W~~~~~~~-~~----~~-~~~~~l~~~a~~~~~----~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~ 368 (508)
T 3ifr_A 299 GCMAATGSALNWLAKLLAP-EA----GE-AAHAQLDALAAEVPA----GADGLVCLPYFLGEKTPIHDPFASGTFTGLSL 368 (508)
T ss_dssp EEESSSHHHHHHHHHHHST-TC----TT-HHHHHHHHHHHTSCT----TGGGCEEECCTTCCC----CCCCCCEEESCCT
T ss_pred chhhhhHHHHHHHHHHHhh-cC----CC-CCHHHHHHHHhcCCC----CCCCeEEecCCCCCCCCCCCCCcCEEEECCCC
Confidence 1112122446677776631 11 00 123444444443221 1222344554321 1111 011122
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 940 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 940 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
.-++.++-..+-+-+.-....+-+.|++.+. .++.|.++||.++++.+.+++.+.+|.++..+.. .|+.|+|||+.
T Consensus 369 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~l 444 (508)
T 3ifr_A 369 SHTRGHLWRALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWV 444 (508)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHH
Confidence 3367776554433333222333344455443 4788999999999999999999999999876654 56889999999
Q ss_pred hhhhccc
Q psy5911 1020 AGVLSGV 1026 (1242)
Q Consensus 1020 a~~l~~~ 1026 (1242)
|+.-.|.
T Consensus 445 A~~a~G~ 451 (508)
T 3ifr_A 445 AAIGGGD 451 (508)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 9877664
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.02 Score=68.49 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhh
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 1021 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~ 1021 (1242)
++.++-. -+++.+.-.++..++...... .++.|.++||.++++.+.+++.+.+|.++..+. +.++.|+|||+.|+
T Consensus 365 ~~~~l~r---AvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~ 439 (497)
T 2zf5_O 365 GREHLAR---ATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAG 439 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHH
Confidence 5555544 344444444444444333222 578899999999999999999999999987544 45699999999998
Q ss_pred hhccc
Q psy5911 1022 VLSGV 1026 (1242)
Q Consensus 1022 ~l~~~ 1026 (1242)
.-.|.
T Consensus 440 ~~~g~ 444 (497)
T 2zf5_O 440 LAVDY 444 (497)
T ss_dssp HHTTS
T ss_pred HHhCc
Confidence 76653
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.028 Score=67.27 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=58.6
Q ss_pred EcHHHHHHHHHHHH-HHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHH
Q psy5911 941 ITRSKLESLVEDLI-SKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018 (1242)
Q Consensus 941 itr~~fe~~~~~~~-~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~ 1018 (1242)
-+|.++-..+-+-+ -.+...+ +.|++ .+. .++.|.++||.++++.+.+++.+.+|.++.. ..+.|+.|+|||+
T Consensus 373 ~~~~~l~RAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~-~~~~e~~alGaA~ 447 (501)
T 3g25_A 373 TEKEHFIRATLESLCYQTRDVM-EAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVER-PEIQETTALGAAF 447 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEE-ESCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEe-cCCCcchHHHHHH
Confidence 35666655333322 3333333 33333 443 4789999999999999999999999999865 4467899999999
Q ss_pred hhhhhccccc
Q psy5911 1019 QAGVLSGVVK 1028 (1242)
Q Consensus 1019 ~a~~l~~~~~ 1028 (1242)
.|+.-.|..+
T Consensus 448 la~~a~G~~~ 457 (501)
T 3g25_A 448 LAGLAVGFWE 457 (501)
T ss_dssp HHHHHTTSSS
T ss_pred HHHHHhCccC
Confidence 9987766433
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.023 Score=68.47 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhcc
Q psy5911 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 1025 (1242)
Q Consensus 948 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~~ 1025 (1242)
.+++-+++.+.-.++..++..+.....++.|.++||+++++.+.+++.+.||.++..+ .+.|+.|+|||+.|+.-.|
T Consensus 408 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 408 VEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHhC
Confidence 3444445555444555555544434467899999999999999999999999998754 4578999999999987554
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.026 Score=68.38 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=61.8
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 300 ~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
.-||.++-.++.-+++.+.-.++..++...-....++.|.++||.++.+.+.+++.+.||.++..+. ..++.|+|||+.
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~-~~e~~alGAA~l 486 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPE-ESEAMLLGSAMM 486 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEES-CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecC-CCcchHHHHHHH
Confidence 4478887444555555554444444432211223578999999999999999999999999987654 467999999999
Q ss_pred hhhhcCC
Q psy5911 380 AGVLSGV 386 (1242)
Q Consensus 380 a~~l~~~ 386 (1242)
|+.-.|.
T Consensus 487 A~~a~G~ 493 (554)
T 3l0q_A 487 GTVAAGV 493 (554)
T ss_dssp HHHHTTS
T ss_pred HHHHcCC
Confidence 9876654
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=95.34 E-value=0.031 Score=66.90 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=107.0
Q ss_pred cCCceeeeechhHHHHHHccCCCCCCCcEEEEEeeCCCceEEEEEEEee-cCCCceEEEE----------EecCCCCCCc
Q psy5911 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIAN-VDGETQFEVL----------STNGDTFLGG 870 (1242)
Q Consensus 802 AGl~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT~dvsi~~~~~-~~~~~~~~v~----------~~~~~~~lGG 870 (1242)
.|.+++....+..||+++.+.... +. +++-+|.+++-.....-.. ....+.+... ...+....||
T Consensus 236 ~g~pV~~g~~D~~aa~~g~g~~~~--g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G 311 (506)
T 3h3n_X 236 SEVPIAGMAGDQQAALFGQMAFEK--GM--IKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAG 311 (506)
T ss_dssp CCCEEEEEEEHHHHHHHHTTCCST--TC--EEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCSS
T ss_pred CCCeEEEECCcHHHHHHhCCCCCC--Cc--EEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhHH
Confidence 678888888899999998875432 22 3335666554222221110 0111222111 1122234566
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhhhhccCCceeeEEeccccc--------cCCC-CeeeEEEE
Q psy5911 871 EDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA--------DKNG-PKHLNVKI 941 (1242)
Q Consensus 871 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~--------~~~~-~~~~~~~i 941 (1242)
. .++|+.+.|... .+. ..+...++.. .. ...-+.+|.+.- +..+ ...++..-
T Consensus 312 ~-----~~~W~~~~~~~~------~~~---~~l~~~a~~~----~~-~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~ 372 (506)
T 3h3n_X 312 S-----AIQWLRDGLRMI------ETS---PQSEELAAKA----KG-DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGT 372 (506)
T ss_dssp H-----HHHHHHHTSCCC------SST---THHHHHHTTC----CS-CSCCEEECCTTCBCTTTCBTTCCCEEECCCTTC
T ss_pred H-----HHHHHHHHcCCC------CcH---HHHHHHHhcC----CC-CCceEEeccccCCCCCccCCCCCEEEEccCCCC
Confidence 4 567777665321 011 1122222221 11 122344565421 1111 01122334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 942 TRSKLESLVEDLISKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 942 tr~~fe~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++.++-..+-+-+.-....+-+.|++ .+. .++.|.++||+++++.+.+++.+.+|.++.. ..+.|+.|+|||+.|
T Consensus 373 ~~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~-~~~~e~~alGaA~lA 448 (506)
T 3h3n_X 373 TKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQR-AANLETTALGAAYLA 448 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEE-CSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEe-cCCCcchhHHHHHHH
Confidence 67766654333332222223333433 343 4788999999999999999999999999875 456789999999999
Q ss_pred hhhcccc
Q psy5911 1021 GVLSGVV 1027 (1242)
Q Consensus 1021 ~~l~~~~ 1027 (1242)
+.-.|..
T Consensus 449 ~~a~G~~ 455 (506)
T 3h3n_X 449 GLAVGFW 455 (506)
T ss_dssp HHHTTSS
T ss_pred HHHhCcc
Confidence 8776643
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.033 Score=61.79 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCeeeeechHHHHHHHhccCCC-CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcc
Q psy5911 151 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 229 (1242)
Q Consensus 151 qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lG 229 (1242)
+...+..+-+..|+++--+-.|.+|...+.+.... ......+|+|+|||++.+++.+- +.+. ......+|
T Consensus 99 ~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~------~~~~---~~~Sl~~G 169 (315)
T 1t6c_A 99 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKG------YKVR---EVISLPIG 169 (315)
T ss_dssp HHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEET------TEEE---EEEEECCC
T ss_pred HHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeC------Ccee---eEEEEecc
Confidence 34445555557899876666666665554432211 13456899999999999999751 2221 12235679
Q ss_pred hHHHHHHH
Q psy5911 230 GEDFDMRI 237 (1242)
Q Consensus 230 G~~iD~~l 237 (1242)
+..+.+.+
T Consensus 170 ~v~l~e~~ 177 (315)
T 1t6c_A 170 IVNLTETF 177 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877664
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.032 Score=66.86 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
||.++ +.-+++.+.-.++..++...- .. ++.|.++||.++.+.+.+++.+.+|.++.....+.++.|+|||+.|+
T Consensus 375 ~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~ 449 (511)
T 3hz6_A 375 TRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAA 449 (511)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHH
Confidence 56555 444444444444444443322 33 78999999999999999999999999982344588999999999998
Q ss_pred hhcCCc
Q psy5911 382 VLSGVV 387 (1242)
Q Consensus 382 ~l~~~~ 387 (1242)
.-.|..
T Consensus 450 ~a~G~~ 455 (511)
T 3hz6_A 450 VELEWS 455 (511)
T ss_dssp HHTTSC
T ss_pred HHhCCc
Confidence 766643
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.028 Score=66.98 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
++.++ +.-+++.+.-.++..++........++.|.++||.++.+.+.+++.+.+|.++..+..++.+.|+|||+.|+
T Consensus 357 ~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~ 433 (484)
T 2itm_A 357 GPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQ 433 (484)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHH
Confidence 45554 334444443333333332211123477899999999999999999999999998776666568999999998
Q ss_pred hhcCC
Q psy5911 382 VLSGV 386 (1242)
Q Consensus 382 ~l~~~ 386 (1242)
.-.+.
T Consensus 434 ~~~g~ 438 (484)
T 2itm_A 434 IAANP 438 (484)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 76553
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.039 Score=65.90 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhh
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
++.++ +.-+++.+.-.++..++...... .++.|.++||.++.+.+.+++.+.+|.++..+. +.++.|+|||+.|+
T Consensus 365 ~~~~l---~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~ 439 (497)
T 2zf5_O 365 GREHL---ARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAG 439 (497)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHH
Confidence 45444 44455555555555555443323 578899999999999999999999999987654 45699999999998
Q ss_pred hhcCC
Q psy5911 382 VLSGV 386 (1242)
Q Consensus 382 ~l~~~ 386 (1242)
.-.+.
T Consensus 440 ~~~g~ 444 (497)
T 2zf5_O 440 LAVDY 444 (497)
T ss_dssp HHTTS
T ss_pred HHhCc
Confidence 76553
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.9 Score=50.53 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=29.2
Q ss_pred cCCCeeeeechHHHHHHHhccC-CCCCCcEEEEEEeCCcceeeeEE
Q psy5911 162 AGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVI 206 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~-~~~~~~~vlV~D~GggT~Dvsv~ 206 (1242)
.|++ +.+.|+..|||++-... .....++++++-+|.| +-..++
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 139 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGII 139 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEE
Confidence 4776 68999999999974322 2223456777788887 555555
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.045 Score=65.39 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 302 TRSKLESLVEDLISKSLKPCEVA---LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 302 tr~~fe~l~~~~~~~i~~~i~~~---l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
+|.++- .-+++.+.-.++.. |++.+ ..++.|.++||.++.+.+.+++.+.||.++... .+.++.|+|||+
T Consensus 364 ~~~~l~---RAvlEgia~~~r~~~~~l~~~g---~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~ 436 (504)
T 3ll3_A 364 QKPEMA---RAVIEGIIFNLYDAASNLIKNT---KKPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLAAMF 436 (504)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHTTS---CCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHHHHH
Confidence 565553 34444443333333 33333 258899999999999999999999999998764 456799999999
Q ss_pred hhhhhcCC
Q psy5911 379 QAGVLSGV 386 (1242)
Q Consensus 379 ~a~~l~~~ 386 (1242)
.|+.-.|.
T Consensus 437 lA~~a~G~ 444 (504)
T 3ll3_A 437 LARQALGL 444 (504)
T ss_dssp HHHHHTTS
T ss_pred HHHHHcCc
Confidence 99876653
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.05 Score=65.57 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcC
Q psy5911 307 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 307 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~ 385 (1242)
..++.-+++.+.-.++..++..+.....++.|.++||.++.+.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.+
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHhC
Confidence 34455566666555566666555444567899999999999999999999999998754 4578999999999986543
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.055 Score=64.73 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=57.6
Q ss_pred EcHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 941 ITRSKLESLV-EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 941 itr~~fe~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
-++.++-..+ +.+.-.+...++..-+..+. .++.|.++||.++++.+.+++.+.+|.++..+ .+.|+.|+|||+.
T Consensus 372 ~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~l 447 (504)
T 2d4w_A 372 VNRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYA 447 (504)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHH
Confidence 3566665533 33333333333332222343 46789999999999999999999999998754 4567999999999
Q ss_pred hhhhccc
Q psy5911 1020 AGVLSGV 1026 (1242)
Q Consensus 1020 a~~l~~~ 1026 (1242)
|+.-.|.
T Consensus 448 A~~~~G~ 454 (504)
T 2d4w_A 448 AGIAVGF 454 (504)
T ss_dssp HHHHHTS
T ss_pred HHhhcCc
Confidence 9876653
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.067 Score=64.30 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=58.7
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 301 ITRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 301 itr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
-+|.++-. +++.+.-.+...++..-+..+. .++.|.++||+++.+.+.+++.+.||.++..+. ..|+.|+|||+.
T Consensus 371 ~~~~~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~-~~E~~alGAA~l 446 (526)
T 3ezw_A 371 VNANHIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERPE-VREVTALGAAYL 446 (526)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeCC-CCchHHHHHHHH
Confidence 35655543 3333333333334333334453 478999999999999999999999999987654 457899999999
Q ss_pred hhhhcCCcc
Q psy5911 380 AGVLSGVVK 388 (1242)
Q Consensus 380 a~~l~~~~~ 388 (1242)
|+.-.|..+
T Consensus 447 A~~a~G~~~ 455 (526)
T 3ezw_A 447 AGLAVGFWQ 455 (526)
T ss_dssp HHHHTTSSS
T ss_pred HHHHhCCCC
Confidence 988776433
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.044 Score=65.46 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=57.0
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+|.++-. +++.+.-.+...++..-+..+. .++.|.++||.++.+.+.+++.+.+|.++... .+.++.|+|||+.|
T Consensus 374 ~~~~l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la 449 (501)
T 3g25_A 374 EKEHFIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLA 449 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHH
Confidence 4555443 3333333333333333222443 47899999999999999999999999998654 46779999999999
Q ss_pred hhhcCCc
Q psy5911 381 GVLSGVV 387 (1242)
Q Consensus 381 ~~l~~~~ 387 (1242)
+.-.|..
T Consensus 450 ~~a~G~~ 456 (501)
T 3g25_A 450 GLAVGFW 456 (501)
T ss_dssp HHHTTSS
T ss_pred HHHhCcc
Confidence 8766643
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.074 Score=63.59 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=56.2
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccCc-ceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHh
Q psy5911 942 TRSKLESL-VEDLISKSLKPCEVALNDAKIDKSKI-SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 942 tr~~fe~~-~~~~~~~~~~~i~~~l~~~~~~~~~i-~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
++.++-.. ++.+.-.+...++..-+..+. .+ +.|.++||.++++.+.+++.+.+|.++... .+.++.|+|||+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~l 451 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVL 451 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHH
Confidence 56665543 333333333333332222343 35 789999999999999999999999998754 4566999999999
Q ss_pred hhhhccc
Q psy5911 1020 AGVLSGV 1026 (1242)
Q Consensus 1020 a~~l~~~ 1026 (1242)
|+.-.|.
T Consensus 452 a~~~~G~ 458 (503)
T 2w40_A 452 AGLEVKI 458 (503)
T ss_dssp HHHHTTC
T ss_pred HHHHhCc
Confidence 9876653
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.065 Score=63.95 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=55.3
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhh
Q psy5911 942 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 942 tr~~fe~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++.++-. +++.+.-.+...++..-+..+ ..++.|.++||.++++.+.+++.+.+|.++... .+.++.|+|||+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g---~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAG---VRLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMA 443 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTS---CCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHH
Confidence 5666544 333333333333332222233 246789999999999999999999999998754 45669999999999
Q ss_pred hhhcc
Q psy5911 1021 GVLSG 1025 (1242)
Q Consensus 1021 ~~l~~ 1025 (1242)
+.-.+
T Consensus 444 ~~a~G 448 (495)
T 2dpn_A 444 GVGAG 448 (495)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 87655
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.049 Score=65.13 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=55.5
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
++.++-. +++.+.-.+...++ .|++.+. .++.|.++||.++.|.+.+++.+.+|.++..+ .+.++.|+|||+.|
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l~-~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA 469 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCLE-LIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQA 469 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHH
Confidence 5555433 33333333333332 3444443 47899999999999999999999999998764 45678899999999
Q ss_pred hhhcC
Q psy5911 381 GVLSG 385 (1242)
Q Consensus 381 ~~l~~ 385 (1242)
+.-.+
T Consensus 470 ~~a~G 474 (515)
T 3i8b_A 470 AWVLS 474 (515)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 87655
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.043 Score=65.63 Aligned_cols=80 Identities=23% Similarity=0.214 Sum_probs=56.4
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+|.++-. +++.+.-.+...++ .|++.+. .++.|.++||.++.+.+.+++.+.+|.++..... .++.|+|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA 445 (508)
T 3ifr_A 371 TRGHLWRALLEAVALAFRHHVA-VLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVA 445 (508)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHH
Confidence 5665533 33333333333333 3344443 4788999999999999999999999999876654 458899999999
Q ss_pred hhhcCC
Q psy5911 381 GVLSGV 386 (1242)
Q Consensus 381 ~~l~~~ 386 (1242)
+.-.+.
T Consensus 446 ~~a~G~ 451 (508)
T 3ifr_A 446 AIGGGD 451 (508)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 876653
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=7.5 Score=42.35 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=35.5
Q ss_pred CcceEEEecCccChHHHHHHHHHhccc-ccccCCCcchhhHhHHHHhhhh
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEK-EVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~-~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+++.|+|.||.+..+.+.+.+++.+.. ++..+. .+.+.+.||+..+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 457899999988778888888777743 455455 667889999987743
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.038 Score=66.23 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=44.6
Q ss_pred CcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhcCCc
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVV 387 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~~~~ 387 (1242)
.++.|.++||.++.|.+.+++.+.+|.++..+ .+.|+.|+|||+.|+.-.|..
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G~~ 477 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSRAGVW 477 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHHHTSS
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHHcCCc
Confidence 47889999999999999999999999998764 456799999999998766643
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=94.14 E-value=0.052 Score=64.95 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=56.8
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+|.++-. +++.+.-.+...++..-+..+. .++.|.++||.++.+.+.+++.+.+|.++..+ .+.|+.|+|||+.|
T Consensus 373 ~~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA 448 (506)
T 3h3n_X 373 TKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYLA 448 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHHH
Confidence 5665543 3333333333333332222343 47889999999999999999999999998754 46779999999999
Q ss_pred hhhcCC
Q psy5911 381 GVLSGV 386 (1242)
Q Consensus 381 ~~l~~~ 386 (1242)
+.-.|.
T Consensus 449 ~~a~G~ 454 (506)
T 3h3n_X 449 GLAVGF 454 (506)
T ss_dssp HHHTTS
T ss_pred HHHhCc
Confidence 876664
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.10 E-value=2.1 Score=47.70 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc---ccccccCCC---cchhhHhHHHHhhhhhcC
Q psy5911 313 LISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF---EKEVKKDIN---PDEAVAVGASVQAGVLSG 385 (1242)
Q Consensus 313 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f---~~~~~~~~~---p~~ava~GAa~~a~~l~~ 385 (1242)
+.+.+.+.+.++++..+ ++.|+|+||.+....+++.|.+.+ |.++..+.. -|.+++.|+|.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 34445556666666554 578999999999999999999887 556554433 478899998876544343
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.09 E-value=1.9 Score=47.85 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred cceEEEecCccC-hHHHHHHHHHhcc----------cccccCCCcchhhHhHHHHhhhh
Q psy5911 335 ISEIILVGGQTR-MPLVQKMVSEFFE----------KEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 335 i~~ViLvGG~s~-ip~v~~~l~~~f~----------~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
++.|+|.||.+. .|.+.+.+++.+. .++......+.+.++|||..+..
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 568999999886 5776666665552 12333445667899999987653
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=9.5 Score=42.24 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhc---ccccccCC---CcchhhHhHHHHhhhh
Q psy5911 315 SKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF---EKEVKKDI---NPDEAVAVGASVQAGV 382 (1242)
Q Consensus 315 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a~~ 382 (1242)
+.+.+.++++.+..+ ++.|+|+||.+....+++.|.+.+ |.++..+. --|.+++.|+|.+...
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 344445555555433 568999999999999999999876 45555444 2366888998776543
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.12 Score=61.71 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=53.2
Q ss_pred EEcHHHHHHHHHH-HHHHHHHHHHHHHHh-cCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHH
Q psy5911 940 KITRSKLESLVED-LISKSLKPCEVALND-AKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGAS 1017 (1242)
Q Consensus 940 ~itr~~fe~~~~~-~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa 1017 (1242)
.-+|.++-..+-+ +.-.+...+ +.+++ .+. .++.|.++||.++++.+.+++.+.+|.++.... .++.|.|||
T Consensus 361 ~~t~~~l~RAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa 434 (489)
T 2uyt_A 361 PESDAELARCIFDSLALLYADVL-HELAQLRGE---DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNI 434 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHH
Confidence 4567776654333 333333333 33333 343 468899999999999999999999999987543 589999996
Q ss_pred Hhhhh
Q psy5911 1018 VQAGV 1022 (1242)
Q Consensus 1018 ~~a~~ 1022 (1242)
+.|..
T Consensus 435 ~~A~~ 439 (489)
T 2uyt_A 435 GIQLM 439 (489)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.12 Score=61.78 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=55.1
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLE-SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe-~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
++.++- .+++.+.-.+...++..-+..+ ..++.|.++||.++.+.+.+++.+.+|.++... .+.++.|+|||+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g---~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAG---VRLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMA 443 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTS---CCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHH
Confidence 455543 2334444444443333222223 346789999999999999999999999998755 45568999999999
Q ss_pred hhhcC
Q psy5911 381 GVLSG 385 (1242)
Q Consensus 381 ~~l~~ 385 (1242)
+.-.+
T Consensus 444 ~~a~G 448 (495)
T 2dpn_A 444 GVGAG 448 (495)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 87555
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.65 E-value=5.2 Score=44.37 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.3
Q ss_pred CcceEEEecCccChHHHHHHHHHhccc---------ccccCCCcchhhHhHHHHhh
Q psy5911 334 KISEIILVGGQTRMPLVQKMVSEFFEK---------EVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~~~f~~---------~~~~~~~p~~ava~GAa~~a 380 (1242)
+++.|+|-||.+..+.+.+.+++.+.. ++....-.+.+.++|||..+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 357899999988877666667665532 22333445678999998765
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.56 E-value=2 Score=47.69 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=32.4
Q ss_pred CcceEEEecCccCh-HHHHHHHHHhcc----------cccccCCCcchhhHhHHHHhh
Q psy5911 334 KISEIILVGGQTRM-PLVQKMVSEFFE----------KEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 334 ~i~~ViLvGG~s~i-p~v~~~l~~~f~----------~~~~~~~~p~~ava~GAa~~a 380 (1242)
+++.|+|.||.++. +.+.+.|++.+. .++......+.+.++|||.++
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 35789999998876 565555554441 234455566789999999876
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.1 Score=62.44 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=57.2
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 380 (1242)
+|.++-. +++.+.-.+...++..-+..+. .++.|.++||.++.+.+.+++.+.+|.++..+ .+.++.|+|||+.|
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA 448 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAA 448 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHH
Confidence 5655543 3344444444444433233343 36789999999999999999999999998754 45679999999999
Q ss_pred hhhcCC
Q psy5911 381 GVLSGV 386 (1242)
Q Consensus 381 ~~l~~~ 386 (1242)
+.-.|.
T Consensus 449 ~~~~G~ 454 (504)
T 2d4w_A 449 GIAVGF 454 (504)
T ss_dssp HHHHTS
T ss_pred HhhcCc
Confidence 876653
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.099 Score=62.50 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=55.8
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCc-ceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 302 TRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKI-SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 302 tr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i-~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
+|.++-. +++.+.-.+...++..-+..+. .+ +.|.++||.++.+.+.+++.+.+|.++... .+.++.|+|||+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~l 451 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVL 451 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHH
Confidence 4555433 3344444444444333222343 35 789999999999999999999999998754 4556899999999
Q ss_pred hhhhcC
Q psy5911 380 AGVLSG 385 (1242)
Q Consensus 380 a~~l~~ 385 (1242)
|+.-.+
T Consensus 452 a~~~~G 457 (503)
T 2w40_A 452 AGLEVK 457 (503)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 987655
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.31 E-value=11 Score=41.29 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=28.1
Q ss_pred HcCCCeeeeechHHHHHHHhccC-CCCCCcEEEEEEeCCcceeeeEE
Q psy5911 161 IAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVI 206 (1242)
Q Consensus 161 ~AGl~~~~li~Ep~AAal~y~~~-~~~~~~~vlV~D~GggT~Dvsv~ 206 (1242)
..|++ +.+.|+..|||++-... .....++++++-+|.| +-.+++
T Consensus 97 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 97 ATGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HHSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hhCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 34665 57999999999875322 2223456777788877 444444
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.16 Score=60.41 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=52.6
Q ss_pred EEcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHH
Q psy5911 300 KITRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 300 ~itr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 378 (1242)
.-+|.++-. +++.+.-.+...++..-+..+. .++.|.++||.++.+.+.+++.+.+|.++.... .++.|.|||+
T Consensus 361 ~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~ 435 (489)
T 2uyt_A 361 PESDAELARCIFDSLALLYADVLHELAQLRGE---DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIG 435 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHH
Confidence 346666543 3344433433433333222343 467899999999999999999999999987543 5899999965
Q ss_pred hhhh
Q psy5911 379 QAGV 382 (1242)
Q Consensus 379 ~a~~ 382 (1242)
.|..
T Consensus 436 ~A~~ 439 (489)
T 2uyt_A 436 IQLM 439 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=91.40 E-value=12 Score=42.44 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=30.7
Q ss_pred cceEEEecCccCh-HHHHHHHHHhcc--------cccccCCCcchhhHhHHHHhhh
Q psy5911 335 ISEIILVGGQTRM-PLVQKMVSEFFE--------KEVKKDINPDEAVAVGASVQAG 381 (1242)
Q Consensus 335 i~~ViLvGG~s~i-p~v~~~l~~~f~--------~~~~~~~~p~~ava~GAa~~a~ 381 (1242)
++.|+|.||.+.. |.+.+.+++.+. .++......+.+.+.|||..+.
T Consensus 315 P~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 315 ISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp CCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 5679999998864 666666665542 1233333455689999998763
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.24 Score=54.78 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHccCCCCC-CCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCc
Q psy5911 792 RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKP-DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGG 870 (1242)
Q Consensus 792 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~-~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG 870 (1242)
...+..+-+..|+++-.+-.|.+|...+.+....- .....+|+|+|||+|.+++.+- +.+. ...+..+|+
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~------~~~~---~~~Sl~~G~ 170 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKG------YKVR---EVISLPIGI 170 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEET------TEEE---EEEEECCCH
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeC------Ccee---eEEEEeccH
Confidence 44555555678999866666667655443322111 2456889999999999999852 2221 122356799
Q ss_pred hHHHHHH
Q psy5911 871 EDFDMRI 877 (1242)
Q Consensus 871 ~~~D~~l 877 (1242)
..+.+.+
T Consensus 171 v~l~e~~ 177 (315)
T 1t6c_A 171 VNLTETF 177 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8776665
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.29 Score=57.81 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhh-hcccccccCCcchhhhhhHHHhhhhh
Q psy5911 947 ESLVEDLISK--SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF-FEKEVKKDINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 947 e~~~~~~~~~--~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~-f~~~v~~~~~p~~aVa~GAa~~a~~l 1023 (1242)
..+++-+++. +.-.++.+++...- .+.|.++||++++|.+.+++.+. ||.++..+. ..|+.|+|||+.|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 3445555553 44445555554431 26899999999999999999999 999987665 4568899999999764
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=91.11 E-value=5.8 Score=43.63 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHccCCC--CCCCcEEEEEeeCCCceEEEEEE
Q psy5911 792 RQATKDAGKIAGLEVLRIINEPTAAALAYGLDK--KPDDRIIVVYDLGGGTFDISVIE 847 (1242)
Q Consensus 792 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~~~~~~vlV~D~GggT~dvsi~~ 847 (1242)
...+.++-+..|+++--+-.|-+|...+.+... .......+|+|+|||+|.+++++
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE
Confidence 344566666789988555455555433332211 11234578889999999999986
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=24 Score=39.23 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=40.8
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHHHH-cC--CCeeeeechHHHHHHHhccCCCCCCcEEEEEEeCCcc
Q psy5911 135 KIEKAVITVPAYFNDSQRQATKDAGKI-AG--LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGT 200 (1242)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~~~~Aa~~-AG--l~~~~li~Ep~AAal~y~~~~~~~~~~vlV~D~GggT 200 (1242)
++..+.|++|...+......+.+..+. .| .-.+.+.|+..|||+++ .. ...+++=+|.|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~~-----~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-TP-----DGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-CS-----SCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-CC-----CCcEEEEEcCCc
Confidence 467899999999987665566665544 34 13568999999999984 21 234445566654
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.53 Score=55.53 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=54.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHh-cccccccCCCcchhhHhHHHHhhhhh
Q psy5911 307 ESLVEDLISK--SLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF-FEKEVKKDINPDEAVAVGASVQAGVL 383 (1242)
Q Consensus 307 e~l~~~~~~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~-f~~~~~~~~~p~~ava~GAa~~a~~l 383 (1242)
..++.-+++. +.-.++.+++...- .+.|.++||.+++|.+.+++.+. ||.++..+.. .++.|+|||+.|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~-~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTANA-HNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESS-CCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCC-CchHHHHHHHHhCcc
Confidence 4455555553 44455556655432 26899999999999999999999 9999876654 568899999999764
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=85.70 E-value=32 Score=37.75 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=28.7
Q ss_pred cCCCeeeeechHHHHHHHhccCC-CCCCcEEEEEEeCCcceeeeEE
Q psy5911 162 AGLEVLRIINEPTAAALAYGLDK-KPDDRIIVVYDLGGGTFDISVI 206 (1242)
Q Consensus 162 AGl~~~~li~Ep~AAal~y~~~~-~~~~~~vlV~D~GggT~Dvsv~ 206 (1242)
.|++ +.+.|+..|||++-.... ....+.++++-+|.| +-.+++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4666 689999999999743222 123467777788887 445544
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=80.63 E-value=56 Score=38.79 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCCcEEEEe-cCCCCHHHHHHH--HHHHHHcCCCeeeeechHHHHHHHhccCCC-CCCcEEEEEEeCCcceeeeEEEEEe
Q psy5911 135 KIEKAVITV-PAYFNDSQRQAT--KDAGKIAGLEVLRIINEPTAAALAYGLDKK-PDDRIIVVYDLGGGTFDISVIEIAN 210 (1242)
Q Consensus 135 ~~~~~vitV-Pa~f~~~qr~~~--~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~~~vlV~D~GggT~Dvsv~~~~~ 210 (1242)
.+..+++|. |.+|+....-.. +.-|...|.+.+. |+--.|-+++...... ..+ +++-+-||++.+-.+ ..
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p---~~l~vsGg~t~~~~~--~~ 145 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP---LTLYVSGGNTQVIAY--VS 145 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC---EEEEECSSCEEEEEE--ET
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC---cEEEEcCCCcEEEEE--eC
Confidence 466677766 777765432221 2233445766554 4544444333222111 223 445566777765433 33
Q ss_pred ecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhHHhcCCceeeeeccccccC
Q psy5911 211 VDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITAD 290 (1242)
Q Consensus 211 ~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~ 290 (1242)
+.+++++..-|.. -|+.||.. ..+ .+......+ .|...|...+ ..+.+|....+
T Consensus 146 ----~~~~~lg~t~d~s-~G~~~D~~-a~~--------lgl~~~gg~----~ie~lA~~g~--------~~~~~p~~~~~ 199 (540)
T 3en9_A 146 ----KKYRVFGETLDIA-VGNCLDQF-ARY--------VNLPHPGGP----YIEELARKGK--------KLVDLPYTVKG 199 (540)
T ss_dssp ----TEEEEEEEBSSSC-HHHHHHHH-HHH--------TTCCSSCHH----HHHHHHHTCC--------CCCCCCCCEET
T ss_pred ----CceEEEeeccchH-hHHHHHHH-HHH--------cCCCCCCHH----HHHHHHHcCC--------ccCcCCCCCCC
Confidence 6789988877654 57777742 222 222222222 2222222211 11222221111
Q ss_pred CCCCeeeEEE-------------EcHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHH
Q psy5911 291 KNGPKHLNVK-------------ITRSKLESLVE-DLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSE 356 (1242)
Q Consensus 291 ~~~~~~~~~~-------------itr~~fe~l~~-~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~ 356 (1242)
.++++. .+..++-..++ -+++.+.+.+.++++..+ ++.|+|+||.+.-..+++.+.+
T Consensus 200 ----~~~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~ 270 (540)
T 3en9_A 200 ----MDIAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKA 270 (540)
T ss_dssp ----TEECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHH
T ss_pred ----cceecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHH
Confidence 111100 01222222121 233444555666666655 5689999999999999999998
Q ss_pred hc
Q psy5911 357 FF 358 (1242)
Q Consensus 357 ~f 358 (1242)
..
T Consensus 271 ~~ 272 (540)
T 3en9_A 271 MC 272 (540)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=80.16 E-value=2.2 Score=46.99 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCeeeeechHHHHHHHhccC--CCCCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcc
Q psy5911 152 RQATKDAGKIAGLEVLRIINEPTAAALAYGLD--KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 229 (1242)
Q Consensus 152 r~~~~~Aa~~AGl~~~~li~Ep~AAal~y~~~--~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lG 229 (1242)
...+..+-+..|+++--+=.|-+|...+.+.. ........+|+|+|||+|.+++.+- +.+.. ...-.+|
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~------~~~~~---~~Sl~lG 162 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNK------NEILW---KQSFEIG 162 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECS------SCEEE---EEEESCC
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEEC------CeEee---eEEEech
Confidence 44455566678998754444555543333321 1112356888999999999999852 22211 1124578
Q ss_pred hHHHHHHH
Q psy5911 230 GEDFDMRI 237 (1242)
Q Consensus 230 G~~iD~~l 237 (1242)
.-.+.+.+
T Consensus 163 ~vrl~e~f 170 (315)
T 3mdq_A 163 GQRLIDRF 170 (315)
T ss_dssp HHHHHHHS
T ss_pred hhHHHHHh
Confidence 87766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1242 | ||||
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 7e-82 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 1e-75 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 1e-80 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 1e-80 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 4e-70 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 5e-65 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 1e-65 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 1e-65 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-58 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 1e-57 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 8e-51 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 8e-51 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 1e-44 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 1e-44 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 1e-31 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 2e-26 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 8e-25 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 8e-25 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 1e-20 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 1e-20 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 3e-20 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 6e-05 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 2e-16 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 4e-04 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-15 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-15 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 1e-04 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 1e-04 | |
| d1dkga1 | 59 | b.73.1.1 (A:139-197) Head domain of nucleotide exc | 0.001 |
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 263 bits (673), Expect = 7e-82
Identities = 132/182 (72%), Positives = 159/182 (87%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 121 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 180
Query: 184 KK 185
K
Sbjct: 181 KG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 246 bits (628), Expect = 1e-75
Identities = 126/175 (72%), Positives = 152/175 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 8 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 68 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 825
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK
Sbjct: 128 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 260 bits (665), Expect = 1e-80
Identities = 138/197 (70%), Positives = 169/197 (85%)
Query: 188 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 247
+R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 248 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 307
+ G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLE
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 308 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 367
SLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 368 PDEAVAVGASVQAGVLS 384
PDEAVA+GA+VQ GVL+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 260 bits (665), Expect = 1e-80
Identities = 138/197 (70%), Positives = 169/197 (85%)
Query: 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
+R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 947
+ G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLE
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 1007
SLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 1008 PDEAVAVGASVQAGVLS 1024
PDEAVA+GA+VQ GVL+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 230 bits (587), Expect = 4e-70
Identities = 100/186 (53%), Positives = 130/186 (69%), Gaps = 6/186 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+GIDLG+T SCV V +GK ++I N +G RTTPS V +T+ R+ +G AK Q NP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAE 119
NT++ KRLIGR++ D +VQ+ +K P+ +V D G V+V + K P ++S+
Sbjct: 61 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSM 119
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
+L KMK AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+A
Sbjct: 120 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179
Query: 180 YGLDKK 185
YGLDKK
Sbjct: 180 YGLDKK 185
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 215 bits (549), Expect = 5e-65
Identities = 96/179 (53%), Positives = 125/179 (69%), Gaps = 6/179 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G+T SCV V +GK ++I N +G RTTPS V +T+ R+ +G AK Q NP NT++
Sbjct: 9 GSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPTNTVFDA 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KRLIGR++ D +VQ D+K P+ +V D G V+V + + P ++S+ +L KMK
Sbjct: 68 KRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 825
AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYGLDKK
Sbjct: 127 IAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK 185
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 217 bits (554), Expect = 1e-65
Identities = 95/199 (47%), Positives = 133/199 (66%), Gaps = 9/199 (4%)
Query: 187 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 246
+R ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 3 AERNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 247 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 306
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARF 114
Query: 307 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKD 365
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 174
Query: 366 INPDEAVAVGASVQAGVLS 384
INPDEAVA GA+VQA +LS
Sbjct: 175 INPDEAVAYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 217 bits (554), Expect = 1e-65
Identities = 95/199 (47%), Positives = 133/199 (66%), Gaps = 9/199 (4%)
Query: 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+R ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 3 AERNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARF 114
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKD 1005
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 174
Query: 1006 INPDEAVAVGASVQAGVLS 1024
INPDEAVA GA+VQA +LS
Sbjct: 175 INPDEAVAYGAAVQAAILS 193
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 196 bits (500), Expect = 1e-58
Identities = 91/159 (57%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1024 SGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQ 1083
S V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT++TQ F+T DNQ V I +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 1084 GERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIK 1143
GER N LGKF+L I PAPRGVPQIEV+FD+DANGILNV+A DK TGKE I I
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 1144 S-SGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181
+ G LS+ +IE M+++AE D+K + V KN +
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 193 bits (492), Expect = 1e-57
Identities = 91/157 (57%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 384 SGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQ 443
S V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT++TQ F+T DNQ V I +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 444 GERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIK 503
GER N LGKF+L I PAPRGVPQIEV+FD+DANGILNV+A DK TGKE I I
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 504 S-SGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
+ G LS+ +IE M+++AE D+K + V KN
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNS 157
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 172 bits (437), Expect = 8e-51
Identities = 88/118 (74%), Positives = 108/118 (91%)
Query: 390 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 449
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++V+IH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 450 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 172 bits (437), Expect = 8e-51
Identities = 88/118 (74%), Positives = 108/118 (91%)
Query: 1030 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 1089
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++V+IH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 1090 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 1147
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 155 bits (392), Expect = 1e-44
Identities = 55/115 (47%), Positives = 79/115 (68%)
Query: 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 452
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 453 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 155 bits (392), Expect = 1e-44
Identities = 55/115 (47%), Positives = 79/115 (68%)
Query: 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 1092
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1093 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 1147
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 118 bits (296), Expect = 1e-31
Identities = 42/181 (23%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR-IIVGLPAKRQAITN 62
K IGIDLGT N+ V + G PSV+ I+ + I
Sbjct: 1 KDIGIDLGTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 63 PNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILK 122
T+ AI+ + D ++ +L+
Sbjct: 52 TPATIKAIRPMRDGVIADY---------------------------------TVALVMLR 78
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
+ A+ +N + VI VP D +R+A DAG AG + +I EP AAA+ G
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GS 136
Query: 183 D 183
+
Sbjct: 137 N 137
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 103 bits (258), Expect = 2e-26
Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 45/174 (25%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR-IIVGLPAKRQAITNPNNTLYA 709
GT N+ V + G PSV+ I+ + I T+ A
Sbjct: 8 GTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA 58
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAE 769
I+ ++D A ++ +L+ + A+
Sbjct: 59 IRP---------------------------------MRDGVIADYTVALVMLRYFINKAK 85
Query: 770 TFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 823
+N + VI VP D +R+A DAG AG + +I EP AAA+ G +
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (251), Expect = 8e-25
Identities = 26/189 (13%), Positives = 67/189 (35%), Gaps = 21/189 (11%)
Query: 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 250
+V D+GGGT +++VI + ++ T + G++ D I+ ++ +++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIV---------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 251 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 310
+ +++ + D++ + + ++ +
Sbjct: 60 ERTAERVKIEIGNVFPSKENDELETTVSGIDLS---------TGLPRKLTLKGGEVREAL 110
Query: 311 EDLISKSLKPCEVALNDAKIDKSK---ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 367
++ ++ L + I L GG + + + ++ + V +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 368 PDEAVAVGA 376
P AVA GA
Sbjct: 171 PLTAVAKGA 179
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (251), Expect = 8e-25
Identities = 26/189 (13%), Positives = 67/189 (35%), Gaps = 21/189 (11%)
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+V D+GGGT +++VI + ++ T + G++ D I+ ++ +++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIV---------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+ +++ + D++ + + ++ +
Sbjct: 60 ERTAERVKIEIGNVFPSKENDELETTVSGIDLS---------TGLPRKLTLKGGEVREAL 110
Query: 951 EDLISKSLKPCEVALNDAKIDKSK---ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 1007
++ ++ L + I L GG + + + ++ + V +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 1008 PDEAVAVGA 1016
P AVA GA
Sbjct: 171 PLTAVAKGA 179
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (217), Expect = 1e-20
Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 42/200 (21%)
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
+ + +++ DLGG T DIS + + GD+ LG + + L
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 55
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+ + I + +L +I
Sbjct: 56 ART-------------------------------KGSSYLADDIIIHRKDNNYLKQRIND 84
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
S+V + ++++L+ E + + + S + ++++GG + + V + + +
Sbjct: 85 ENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 142
Query: 364 KDI---NPDEAVAVGASVQA 380
+ N + G +
Sbjct: 143 RFFKTNNSQYDLVNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (217), Expect = 1e-20
Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 42/200 (21%)
Query: 824 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883
+ + +++ DLGG T DIS + + GD+ LG + + L
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 55
Query: 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 943
+ + I + +L +I
Sbjct: 56 ART-------------------------------KGSSYLADDIIIHRKDNNYLKQRIND 84
Query: 944 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
S+V + ++++L+ E + + + S + ++++GG + + V + + +
Sbjct: 85 ENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 142
Query: 1004 KDI---NPDEAVAVGASVQA 1020
+ N + G +
Sbjct: 143 RFFKTNNSQYDLVNGMYLIG 162
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 84.4 bits (209), Expect = 3e-20
Identities = 32/92 (34%), Positives = 62/92 (67%)
Query: 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
L+E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K +++ K+ ++K +IE
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 1208 KSISNLELLIKGDDIELIKKGNEDLLKISENI 1239
+++ LE +KG+D I+ ++L ++S+ +
Sbjct: 61 SALTALETALKGEDKAAIEAKMQELAQVSQKL 92
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (96), Expect = 6e-05
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
L+E EI+ M++DAE N+E D+KFEELV+ +N+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQ 32
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 2e-16
Identities = 23/95 (24%), Positives = 53/95 (55%)
Query: 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
L++ EI +MIKD+ +E D K L + K EA + + L + ++ E++ I+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 1208 KSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+ ++L + +GDD++ I++ +++ K +++ +
Sbjct: 61 DAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAAR 95
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (91), Expect = 4e-04
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIR 567
L++ EI +MIKD+ +E D K L + K E + D +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVE--------AARVLESLHGALAADAALLS 52
Query: 568 KLKEIVIENIIIEL 581
+ VI++ L
Sbjct: 53 AAERQVIDDAAAHL 66
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.1 bits (176), Expect = 3e-15
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 45/196 (22%)
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
++++P VV D+G T D+ I + +++ V+ + +G D + +
Sbjct: 1 IEQQP--GYGVVIDVGSRTTDVLTINLMDME-----PVVELSFSLQIGVGDAISALSRKI 53
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ + ++
Sbjct: 54 ---------------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEV 86
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK- 360
+ LE L +I ++ ++ +I VGG + + + E
Sbjct: 87 SGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGT 137
Query: 361 -EVKKDINPDEAVAVG 375
K + A A+G
Sbjct: 138 LVKIKPEDLQFANALG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.1 bits (176), Expect = 3e-15
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 45/196 (22%)
Query: 822 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 881
++++P VV D+G T D+ I + +++ V+ + +G D + +
Sbjct: 1 IEQQP--GYGVVIDVGSRTTDVLTINLMDME-----PVVELSFSLQIGVGDAISALSRKI 53
Query: 882 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 941
+ + ++
Sbjct: 54 ---------------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEV 86
Query: 942 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK- 1000
+ LE L +I ++ ++ +I VGG + + + E
Sbjct: 87 SGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGT 137
Query: 1001 -EVKKDINPDEAVAVG 1015
K + A A+G
Sbjct: 138 LVKIKPEDLQFANALG 153
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 23/185 (12%)
Query: 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 250
+VV +LG + + +G +G + + L F+
Sbjct: 9 VVVVNLGYNFTGLIAYK----NGVPIK-----ISYVPVGMKHVIKDVSAVLDTSFEE--- 56
Query: 251 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 310
+RL A E+ K I ++L ++
Sbjct: 57 ---------SERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM 107
Query: 311 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 370
K + E + + ++L GG ++P + ++ +E F+ V+ +
Sbjct: 108 S-KSKKFFREVEAKIVEEGEIGI-PGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANS 165
Query: 371 AVAVG 375
Sbjct: 166 DRPSI 170
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 23/185 (12%)
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+VV +LG + + +G +G + + L F+
Sbjct: 9 VVVVNLGYNFTGLIAYK----NGVPIK-----ISYVPVGMKHVIKDVSAVLDTSFEE--- 56
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+RL A E+ K I ++L ++
Sbjct: 57 ---------SERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM 107
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
K + E + + ++L GG ++P + ++ +E F+ V+ +
Sbjct: 108 S-KSKKFFREVEAKIVEEGEIGI-PGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANS 165
Query: 1011 AVAVG 1015
Sbjct: 166 DRPSI 170
|
| >d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Length = 59 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Head domain of nucleotide exchange factor GrpE superfamily: Head domain of nucleotide exchange factor GrpE family: Head domain of nucleotide exchange factor GrpE domain: Head domain of nucleotide exchange factor GrpE species: Escherichia coli [TaxId: 562]
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
++ I+ET V +P++H+AI + + G + ++ G
Sbjct: 1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGN---VLGIMQKG 39
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1242 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.98 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.97 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.91 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.91 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.78 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.77 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.72 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.35 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.33 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.29 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.23 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.15 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.06 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.05 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.92 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.25 | |
| d1dkga1 | 59 | Head domain of nucleotide exchange factor GrpE {Es | 98.14 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.67 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.65 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.63 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.6 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.58 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.38 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.29 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.27 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.26 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.07 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 96.16 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 96.08 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 95.76 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 95.53 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.3 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.11 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 94.03 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 93.52 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 93.01 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 91.91 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 91.7 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 86.5 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 86.44 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 85.8 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 85.6 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 83.14 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 81.64 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=2.1e-36 Score=315.09 Aligned_cols=197 Identities=70% Similarity=1.069 Sum_probs=184.6
Q ss_pred CcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q psy5911 188 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 267 (1242)
Q Consensus 188 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 267 (1242)
+++||||||||||||+|++++....+...++++++.++..+||++||++|++|+.++|.++++.++..+++++.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 46899999999999999999987666688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccCh
Q psy5911 268 EKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM 347 (1242)
Q Consensus 268 e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~i 347 (1242)
|++|+.||.+.++.+.+|.+..+..++.+++++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999999999988877777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 348 PLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 348 p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
|+|+++|++.|+.++..+.||++|||+|||++|+++|
T Consensus 162 p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999876
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=3.6e-36 Score=313.22 Aligned_cols=197 Identities=70% Similarity=1.069 Sum_probs=184.9
Q ss_pred CcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH
Q psy5911 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA 907 (1242)
Q Consensus 828 ~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 907 (1242)
+++|||||+||||||+|++++....+...++++++.++..+||++||++|++|+.++|+++++.++..+++++.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 46899999999999999999987666688999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCch
Q psy5911 908 EKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM 987 (1242)
Q Consensus 908 e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~i 987 (1242)
|++|+.||.+.++++.+|.+..+..++.++.++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999999999988888777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 988 PLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 988 p~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
|+|+++|++.|+.++..+.||++|||+|||++|+++|
T Consensus 162 p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999886
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=6e-36 Score=308.22 Aligned_cols=182 Identities=73% Similarity=1.122 Sum_probs=175.8
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHH
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 83 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 83 (1242)
.|||||||||||+||++.+|.++++.|++|.+.+||+++|.+++.+++|+.|..+..++|.++++++|||||+++.++.+
T Consensus 1 ~VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (183)
T d1dkgd1 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 80 (183)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence 47999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHcC
Q psy5911 84 QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 163 (1242)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~AG 163 (1242)
+...+.+||.++..+++...+.+.++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG 160 (183)
T d1dkgd1 81 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 160 (183)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTT
T ss_pred HhhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeechHHHHHHHhccCCC
Q psy5911 164 LEVLRIINEPTAAALAYGLDKK 185 (1242)
Q Consensus 164 l~~~~li~Ep~AAal~y~~~~~ 185 (1242)
|++++|++||+|||++|++++.
T Consensus 161 ~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 161 LEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp CEESCCCBHHHHHHHHHTCCC-
T ss_pred CCEEEEecCHHHHHHHhcccCC
Confidence 9999999999999999998753
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-34 Score=297.81 Aligned_cols=190 Identities=50% Similarity=0.808 Sum_probs=179.2
Q ss_pred CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy5911 187 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 266 (1242)
Q Consensus 187 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 266 (1242)
.+++||||||||||+|+|++++.+ +.++++++.|+..+||.+||++|++|+.++|..+++.++..+++.+.+|+.+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~----~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTA 78 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeC----CEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 467899999999999999999987 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccC
Q psy5911 267 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346 (1242)
Q Consensus 267 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 346 (1242)
||++|+.||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+|+
T Consensus 79 ~e~~K~~ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr 154 (193)
T d1bupa2 79 CERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTR 154 (193)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGG
T ss_pred HHHHhhccCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccc
Confidence 999999999999999988876654 5688999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcc-cccccCCCcchhhHhHHHHhhhhhc
Q psy5911 347 MPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 347 ip~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
+|+|++.|+++|+ .++..+.||++|||+|||++||++|
T Consensus 155 ~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 155 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp CHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 9999999999994 6788899999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1e-33 Score=294.68 Aligned_cols=190 Identities=50% Similarity=0.808 Sum_probs=178.6
Q ss_pred CCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH
Q psy5911 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 906 (1242)
Q Consensus 827 ~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 906 (1242)
.+++|||||+||||||+|++++.+ +.++++++.|+..+||.+||++|++|+.++|..+++.++..+++.+.+|+.+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~----~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTA 78 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEET----TEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeC----CEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 467899999999999999999987 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCc
Q psy5911 907 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986 (1242)
Q Consensus 907 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 986 (1242)
||++|+.||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||
T Consensus 79 ~e~~K~~ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr 154 (193)
T d1bupa2 79 CERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTR 154 (193)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGG
T ss_pred HHHHhhccCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccc
Confidence 999999999999999988876544 4578999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc-ccccccCCcchhhhhhHHHhhhhhc
Q psy5911 987 MPLVQKMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 987 ip~v~~~l~~~f~-~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
+|+|++.|+++|+ .++..+.||++|||+|||++|+++|
T Consensus 155 ~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 155 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp CHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 9999999999995 6788899999999999999999875
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.1e-34 Score=292.36 Aligned_cols=180 Identities=54% Similarity=0.864 Sum_probs=165.6
Q ss_pred CeEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 3 CKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 3 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
+.|||||||||||+||++++|+++++.+.+|++.+||+|+|.+ +++++|..|..+...+|.++++++|||||+++.++.
T Consensus 1 g~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~-~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~ 79 (185)
T d1bupa1 1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 79 (185)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHH
T ss_pred CCEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECC-CcEEEeechHHHhhcCcccchhHHHHHhCCCCccHH
Confidence 4689999999999999999999999999999999999999985 478899999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEecCCCCeEEEE--c--CeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHH
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEV--K--DKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDA 158 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~A 158 (1242)
++...+.+|+.++... +.....+ . .+.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~A 158 (185)
T d1bupa1 80 VQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDA 158 (185)
T ss_dssp HHHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHH
Confidence 9999999999887643 4443333 2 367999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechHHHHHHHhccCC
Q psy5911 159 GKIAGLEVLRIINEPTAAALAYGLDK 184 (1242)
Q Consensus 159 a~~AGl~~~~li~Ep~AAal~y~~~~ 184 (1242)
|++|||++++||+||+|||++|++++
T Consensus 159 a~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 159 GTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 99999999999999999999999865
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.98 E-value=1.1e-32 Score=283.60 Aligned_cols=181 Identities=70% Similarity=1.085 Sum_probs=174.9
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhHH
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQ 724 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~~ 724 (1242)
++|||+||++|++++++.|+++++.|++|++.+||+++|.+++.+++|..|..+...+|.++++++|||||+.+.++.++
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 68999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy5911 725 KDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL 804 (1242)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~AGl 804 (1242)
.....+||.++..+++...+.+.++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeechhHHHHHHccCCCC
Q psy5911 805 EVLRIINEPTAAALAYGLDKK 825 (1242)
Q Consensus 805 ~~~~li~Ep~AAal~y~~~~~ 825 (1242)
+++++++||+|||++|++++.
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC-
T ss_pred CEEEEecCHHHHHHHhcccCC
Confidence 999999999999999998753
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=2.5e-31 Score=259.56 Aligned_cols=157 Identities=57% Similarity=0.832 Sum_probs=151.8
Q ss_pred ccccceEEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCC
Q psy5911 1025 GVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS 1104 (1242)
Q Consensus 1025 ~~~~~~~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~ 1104 (1242)
+.++++++.||+|+|+||++.+|.|.++||||++||+++++.|+|..|+|+.+.|+|||||+..+.+|.+||+|.|+++|
T Consensus 2 ~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip 81 (159)
T d1yuwa1 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 81 (159)
T ss_dssp CCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCC
T ss_pred CccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCC-CCCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHH
Q psy5911 1105 PAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181 (1242)
Q Consensus 1105 ~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le 1181 (1242)
|.|+|.++|+|+|++|.||+|+|+|.+..||++.+++|..+. .|+++|+++|++++++++.+|+..|++.++||.||
T Consensus 82 ~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 82 PAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred cCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999875 59999999999999999999999999999999875
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.2e-30 Score=268.86 Aligned_cols=179 Identities=54% Similarity=0.853 Sum_probs=165.0
Q ss_pred ccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEecCCcEEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChhH
Q psy5911 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 723 (1242)
Q Consensus 644 ~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~~ 723 (1242)
+++|||+||++|+++++.+|+++++.|.+|++.+||+|+|.++ ++++|..|..+...+|.++++++|||||+.+.++..
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~-~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCC-cEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 5789999999999999999999999999999999999999855 789999999999999999999999999999999999
Q ss_pred HhhcccCceEEEEcCCCCeEEEE--c--CeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHH
Q psy5911 724 QKDIKMVPYKIVAADNGDAWVEV--K--DQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAG 799 (1242)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa 799 (1242)
+...+.+|+.+.... +.....+ . .+.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 999999999887644 4444333 2 3579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHccCCC
Q psy5911 800 KIAGLEVLRIINEPTAAALAYGLDK 824 (1242)
Q Consensus 800 ~~AGl~~~~li~Ep~AAal~y~~~~ 824 (1242)
++|||+++++|+||+|||++|++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999999865
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=3.5e-30 Score=251.43 Aligned_cols=154 Identities=58% Similarity=0.844 Sum_probs=144.5
Q ss_pred CCccceEEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCC
Q psy5911 385 GVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS 464 (1242)
Q Consensus 385 ~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~ 464 (1242)
+.++++++.||+|+|+||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+||||++..+.+|.+||+|.|+++|
T Consensus 2 ~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip 81 (159)
T d1yuwa1 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 81 (159)
T ss_dssp CCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCC
T ss_pred CccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCC-CCchHHHHHHHHHHHhhchhhhhHHHHHHHHH
Q psy5911 465 PAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG-GLSEIEIENMIKDAELNSELDKKFEELVKCKN 538 (1242)
Q Consensus 465 ~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~-~l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~ 538 (1242)
|.|+|.++|+|+|++|.||+|+|+|.+..||++.+++|.... .|++++++++++++++++.+|+..+++.+++|
T Consensus 82 ~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn 156 (159)
T d1yuwa1 82 PAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN 156 (159)
T ss_dssp CCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCE
T ss_pred cCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999764 59999999999999999988877665555444
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.3e-25 Score=201.65 Aligned_cols=117 Identities=74% Similarity=1.138 Sum_probs=113.2
Q ss_pred EEEeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCc
Q psy5911 391 LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 470 (1242)
Q Consensus 391 ~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 470 (1242)
++.|++|+|+||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+|||||+..+.+|..||+|.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCC
Q psy5911 471 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507 (1242)
Q Consensus 471 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~ 507 (1242)
++|+|+|++|.||+|+|+|.|..||++.+++|+...|
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~G 118 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCS
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCCC
Confidence 9999999999999999999999999999999987653
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.7e-24 Score=199.25 Aligned_cols=116 Identities=74% Similarity=1.129 Sum_probs=112.8
Q ss_pred EEeecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCc
Q psy5911 1031 LLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 1110 (1242)
Q Consensus 1031 ~~~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~ 1110 (1242)
++.||+|+|+||++.+|.|.++||||++||+++++.|+|..|||+.+.|++||||+..+.+|..||+|.|+++||.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEcCCeeEEEEEEecCCCceEEEEEccCC
Q psy5911 1111 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSG 1146 (1242)
Q Consensus 1111 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~ 1146 (1242)
++|+|+|++|.||+|+|+|.+..||++.+++|....
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999998764
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.7e-24 Score=197.20 Aligned_cols=115 Identities=48% Similarity=0.776 Sum_probs=111.8
Q ss_pred EeeccceeEEEeeCCeeeEEEcCCCCCCcceEEEeEeccCCceeEEEEEEecCcccccCCcceeEEEecCCCCCCCCcCE
Q psy5911 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 472 (1242)
Q Consensus 393 ~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 472 (1242)
.||+|+|+||++.+|.|.+|||||++||+++++.|++..|+|+.+.|++||||+..+.+|..||+|.|.++|+.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEEEcCCCcEEEEEEecCCC
Q psy5911 473 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507 (1242)
Q Consensus 473 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~ 507 (1242)
|+|+|++|.||+|+|+|.|+.||++.+++|+.++|
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999987654
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.9e-24 Score=195.45 Aligned_cols=115 Identities=48% Similarity=0.776 Sum_probs=111.8
Q ss_pred eecccceeeEEEeCceEEEEecCCCCcccceEEEeeeccCCCceEEEEeecccccccccCcceeeEEecCCCCCCCCcCE
Q psy5911 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 1112 (1242)
Q Consensus 1033 ~~~~~~~~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~n~~lg~~~l~~~~~~~~g~~~ 1112 (1242)
.||+|+|+||++.+|.|.++||||++||+++++.|+|..|+|+.+.|++||||+..+.+|..||+|.|.++||.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEecCCCceEEEEEccCCC
Q psy5911 1113 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 1147 (1242)
Q Consensus 1113 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~ 1147 (1242)
|+|+|++|.||+|+|+|.++.||++.+++|+.++|
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999987654
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=6.3e-21 Score=185.13 Aligned_cols=133 Identities=34% Similarity=0.430 Sum_probs=103.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEec--CCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChH
Q psy5911 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE--DNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 82 (1242)
Q Consensus 5 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 82 (1242)
.||||||||||+||+..+| .++. .|+.+++.. +..+.+|..|......++.+. ...|++
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~~--------- 62 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRPM--------- 62 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECCE---------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEec---------
Confidence 6999999999999875444 3332 256666653 234457777766554444332 222222
Q ss_pred HHHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 83 VQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 162 (1242)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~~~~Aa~~A 162 (1242)
.+..+.+.+..++++++++..++...+..+.++|||||++|++.||+++++||+.|
T Consensus 63 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 63 ------------------------RDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp ------------------------ETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred ------------------------cCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 23456788899999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeechHHHHHHHh
Q psy5911 163 GLEVLRIINEPTAAALAY 180 (1242)
Q Consensus 163 Gl~~~~li~Ep~AAal~y 180 (1242)
||++++||+||+|||+.+
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999964
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=7e-20 Score=190.88 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=127.6
Q ss_pred CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy5911 187 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 266 (1242)
Q Consensus 187 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 266 (1242)
++..+|||||||||||+|+++... .. ..+....||.+++..+..++...+..... ..........
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~----~~-----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 69 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGS----IV-----TWESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKIE 69 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTE----EE-----EEEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHHH
T ss_pred CCCceEEEEcCCCcEEEEEEEcCC----Ee-----EEeeecCCCcccccchhhhhhhhhccccc------chhHHHHHHH
Confidence 567899999999999999998543 22 22345679999999999999887754332 1111111111
Q ss_pred HHHHhHH-hcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC---CcceEEEec
Q psy5911 267 AEKAKIE-LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKS---KISEIILVG 342 (1242)
Q Consensus 267 ~e~~K~~-Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~---~i~~ViLvG 342 (1242)
...++.. .+......+..+... .+......+++.++++++.+++.++...+.++++.+..... .++.|+|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvG 145 (196)
T d1jcea2 70 IGNVFPSKENDELETTVSGIDLS----TGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTG 145 (196)
T ss_dssp HCBCSCCHHHHHCEEEEEEEETT----TTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEES
T ss_pred Hhhhhhhhhccccceeeeeeecc----CCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeC
Confidence 1100000 001111222222222 22456788999999999999999999999999998775432 256799999
Q ss_pred CccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhhhc
Q psy5911 343 GQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384 (1242)
Q Consensus 343 G~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~l~ 384 (1242)
|+|++|+|++++++.||.++....||++|||+|||+++..+.
T Consensus 146 GsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 146 GGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp GGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred chhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 999999999999999999999999999999999999875543
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=3.6e-19 Score=185.46 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=128.3
Q ss_pred CCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH
Q psy5911 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 906 (1242)
Q Consensus 827 ~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 906 (1242)
++..+||||+||||||+|+++... . ...+....||.+++..+..++...+..... ..........
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~----~-----~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 69 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGS----I-----VTWESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKIE 69 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTE----E-----EEEEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHHH
T ss_pred CCCceEEEEcCCCcEEEEEEEcCC----E-----eEEeeecCCCcccccchhhhhhhhhccccc------chhHHHHHHH
Confidence 456789999999999999998654 2 223345679999999999999887754433 1111111111
Q ss_pred HHHhhhhc-cCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---CcceEEEec
Q psy5911 907 AEKAKIEL-SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKS---KISEIILVG 982 (1242)
Q Consensus 907 ~e~~K~~L-s~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~---~i~~ViLvG 982 (1242)
...++... +......+..+.. ..+......+++.++++++.+++.++...+.++++.+..... .++.|+|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvG 145 (196)
T d1jcea2 70 IGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTG 145 (196)
T ss_dssp HCBCSCCHHHHHCEEEEEEEET----TTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEES
T ss_pred Hhhhhhhhhccccceeeeeeec----cCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeC
Confidence 11111100 1111122222221 223456788999999999999999999999999998775432 256799999
Q ss_pred CcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhhc
Q psy5911 983 GQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 1024 (1242)
Q Consensus 983 G~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l~ 1024 (1242)
|+|++|.|++++++.||.++....||++|||+|||+++..+.
T Consensus 146 GsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 146 GGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp GGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred chhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 999999999999999999999999999999999999876543
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=4.5e-18 Score=164.75 Aligned_cols=133 Identities=31% Similarity=0.386 Sum_probs=101.2
Q ss_pred cccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEec-CCc-EEEcHHHHHHhhhCCcchhhHHHHhcCCCCCChh
Q psy5911 645 TFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE-DNR-IIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEI 722 (1242)
Q Consensus 645 ~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~-~~~G~~A~~~~~~~p~~~~~~~krllg~~~~d~~ 722 (1242)
.+|||+||+||++++..+| .++. .|+.+++.. .+. +.+|..|......+|.+. ...|
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k----------- 60 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIR----------- 60 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEEC-----------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEE-----------
Confidence 4699999999999875444 3332 256666643 334 446766665443333332 1111
Q ss_pred HHhhcccCceEEEEcCCCCeEEEEcCeeeChHHHHHHHHHHHHHHHHhHhCCCCCcEEEEecCCCCHHHHHHHHHHHHHc
Q psy5911 723 VQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIA 802 (1242)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~~~~Aa~~A 802 (1242)
.+.+..+.+.+...+++.+++..++...+..+.++|||||++|++.||++|++||+.|
T Consensus 61 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 61 ----------------------PMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp ----------------------CEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred ----------------------eccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 1223456788999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeechhHHHHHHc
Q psy5911 803 GLEVLRIINEPTAAALAY 820 (1242)
Q Consensus 803 Gl~~~~li~Ep~AAal~y 820 (1242)
||++++||+||+|||+.+
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999964
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=9.3e-14 Score=138.88 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=100.7
Q ss_pred CCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q psy5911 187 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 266 (1242)
Q Consensus 187 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 266 (1242)
+..++||+|+||||||+++++ . +...+....++..+||.++++.+++++...+.... ......
T Consensus 5 e~~~ilViDiGggTtDi~v~~--~----~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~-------~~~~~~---- 67 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVM--G----KLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS-------SYLADD---- 67 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEE--G----GGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG-------HHHHHH----
T ss_pred CCCCEEEEECCCCcEEEEEEc--C----CeEEEEEeeccccccchHHHHHHHHhhHHhhchhh-------hhhHHH----
Confidence 457899999999999999975 2 34455666777889999999999887753332110 000000
Q ss_pred HHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccC
Q psy5911 267 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346 (1242)
Q Consensus 267 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 346 (1242)
.++.. ........ .......++.+++++.+.++.+.+.+.+.+. ...+++.|+|+||+|+
T Consensus 68 --~~~~~---~~~~~~~~-----------~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs~ 127 (163)
T d2zgya2 68 --IIIHR---KDNNYLKQ-----------RINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGAE 127 (163)
T ss_dssp --HHHTT---TCHHHHHH-----------HSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTHH
T ss_pred --HHHhh---cccccccc-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchHH
Confidence 00000 00000000 0011234556666666666666666655554 3467899999999986
Q ss_pred hHHHHHHHHHhccc---ccccCCCcchhhHhHHHHhh
Q psy5911 347 MPLVQKMVSEFFEK---EVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 347 ip~v~~~l~~~f~~---~~~~~~~p~~ava~GAa~~a 380 (1242)
.+++.|++.|+. .+....||..|+|+|+.++|
T Consensus 128 --ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 128 --LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp --HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 589999999963 46788999999999998876
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.4e-13 Score=137.50 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH
Q psy5911 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA 906 (1242)
Q Consensus 827 ~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 906 (1242)
+..++||+|+||||||+++++- +...+....++..+||.++++.+.+++...+.... ......+
T Consensus 5 e~~~ilViDiGggTtDi~v~~~------~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~-------~~~~~~~--- 68 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVMG------KLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS-------SYLADDI--- 68 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEEG------GGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG-------HHHHHHH---
T ss_pred CCCCEEEEECCCCcEEEEEEcC------CeEEEEEeeccccccchHHHHHHHHhhHHhhchhh-------hhhHHHH---
Confidence 4568999999999999999862 33445566677889999999999887754332111 1000000
Q ss_pred HHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCc
Q psy5911 907 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986 (1242)
Q Consensus 907 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 986 (1242)
++... .... .... ......++.+++++.+.+..+.+.+.+.+.+ ..+++.|+|+||+|+
T Consensus 69 ---~~~~~---~~~~-----~~~~------~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~~----~~~~~~iil~GGGs~ 127 (163)
T d2zgya2 69 ---IIHRK---DNNY-----LKQR------INDENKISIVTEAMNEALRKLEQRVLNTLNE----FSGYTHVMVIGGGAE 127 (163)
T ss_dssp ---HHTTT---CHHH-----HHHH------SSSSCTHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCCEEEEESTTHH
T ss_pred ---HHhhc---cccc-----cccc------chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccceEEEECchHH
Confidence 10000 0000 0000 0112345666667777777666666666543 457899999999996
Q ss_pred hHHHHHHHHhhhcc---cccccCCcchhhhhhHHHhh
Q psy5911 987 MPLVQKMVSEFFEK---EVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 987 ip~v~~~l~~~f~~---~v~~~~~p~~aVa~GAa~~a 1020 (1242)
.+++.+++.|+. .+....||..|+|+|+.++|
T Consensus 128 --ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 128 --LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp --HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 489999999963 56788999999999998876
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=3e-12 Score=130.46 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=110.2
Q ss_pred cEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q psy5911 189 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE 268 (1242)
Q Consensus 189 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 268 (1242)
..++|+|+|+||+|++++.- +.+.... ...+||++||+.|+..+. ++ ...||
T Consensus 7 ~Gv~vvDiG~~tt~i~i~~~------G~l~~~~---~i~~GG~~iT~~Ia~~l~--------i~-----------~~~AE 58 (191)
T d1e4ft2 7 RGVVVVNLGYNFTGLIAYKN------GVPIKIS---YVPVGMKHVIKDVSAVLD--------TS-----------FEESE 58 (191)
T ss_dssp HCEEEEEECSSCEEEEEEET------TEEEEEE---EESCCHHHHHHHHHHHHT--------CC-----------HHHHH
T ss_pred CCEEEEEeCCCcEEEEEEEC------CeEEEEE---EEeeChHHHHHHHHHHhc--------cc-----------HHHHH
Confidence 45788999999999999863 2222221 235799999999987653 11 55899
Q ss_pred HHhHHhcCCce---eeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------cCCcceEE
Q psy5911 269 KAKIELSNAEQ---TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID------KSKISEII 339 (1242)
Q Consensus 269 ~~K~~Ls~~~~---~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~------~~~i~~Vi 339 (1242)
++|+.+..... ....++....+ ......+++..+.+++.+.++++...+++.++..... ...+..|+
T Consensus 59 ~iK~~~g~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~Iv 134 (191)
T d1e4ft2 59 RLIITHGNAVYNDLKEEEIQYRGLD----GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVV 134 (191)
T ss_dssp HHHHHHCCSCCTTCCCCEEEEECTT----SSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEE
T ss_pred HHHhhccccccccccchhccccccc----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEE
Confidence 99998764321 11112211111 1234578999999999999999999888888753211 11255699
Q ss_pred EecCccChHHHHHHHHHhccccccc-----------------CCCcchhhHhHHHH
Q psy5911 340 LVGGQTRMPLVQKMVSEFFEKEVKK-----------------DINPDEAVAVGASV 378 (1242)
Q Consensus 340 LvGG~s~ip~v~~~l~~~f~~~~~~-----------------~~~p~~ava~GAa~ 378 (1242)
|+||+|++|.+.+++++.|+.++.. ..+|..++|.|.++
T Consensus 135 LtGGgs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 135 LTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp EESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred EecchhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999999999999999876531 23678899999875
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1e-11 Score=126.47 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=108.2
Q ss_pred EEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHH
Q psy5911 830 IIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK 909 (1242)
Q Consensus 830 ~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 909 (1242)
-++|+|+|+|||+++++.-.. +... ....+||++|++.|.+.+.- + ...||+
T Consensus 8 Gv~vvDiG~~tt~i~i~~~G~------l~~~---~~i~~GG~~iT~~Ia~~l~i--------~-----------~~~AE~ 59 (191)
T d1e4ft2 8 GVVVVNLGYNFTGLIAYKNGV------PIKI---SYVPVGMKHVIKDVSAVLDT--------S-----------FEESER 59 (191)
T ss_dssp CEEEEEECSSCEEEEEEETTE------EEEE---EEESCCHHHHHHHHHHHHTC--------C-----------HHHHHH
T ss_pred CEEEEEeCCCcEEEEEEECCe------EEEE---EEEeeChHHHHHHHHHHhcc--------c-----------HHHHHH
Confidence 478889999999999987322 2211 12357999999999876531 1 558999
Q ss_pred hhhhccCCce---eeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ccCcceEEE
Q psy5911 910 AKIELSNAEQ---TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID------KSKISEIIL 980 (1242)
Q Consensus 910 ~K~~Ls~~~~---~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~------~~~i~~ViL 980 (1242)
.|+.++.... ....++.... ++ .....+++..+.+++.+.++++...+.+.++..... ...+..|+|
T Consensus 60 iK~~~g~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvL 135 (191)
T d1e4ft2 60 LIITHGNAVYNDLKEEEIQYRGL--DG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVL 135 (191)
T ss_dssp HHHHHCCSCCTTCCCCEEEEECT--TS--SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEE
T ss_pred HHhhccccccccccchhcccccc--cC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEE
Confidence 9998653211 1112221111 11 234578899999999999999998888888653211 112556999
Q ss_pred ecCcCchHHHHHHHHhhhcccccc-----------------cCCcchhhhhhHHH
Q psy5911 981 VGGQTRMPLVQKMVSEFFEKEVKK-----------------DINPDEAVAVGASV 1018 (1242)
Q Consensus 981 vGG~s~ip~v~~~l~~~f~~~v~~-----------------~~~p~~aVa~GAa~ 1018 (1242)
+||+|++|.+.+.+++.|+.++.. ..+|..++|.|.++
T Consensus 136 tGGgs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 136 TGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp ESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred ecchhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 999999999999999999876521 13577888888875
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=5.4e-11 Score=105.10 Aligned_cols=94 Identities=34% Similarity=0.620 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5911 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKK 1227 (1242)
Q Consensus 1148 l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 1227 (1242)
||++||++|++++++++++|+..|++.+++|.+|+|||.+++.|+.++..+++++++.|...++++..||.+++.+.++.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~d~~~i~~ 80 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEA 80 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy5911 1228 GNEDLLKISENIIK 1241 (1242)
Q Consensus 1228 ~~~~l~~~~~~~~~ 1241 (1242)
+.+.|+..+.+++.
T Consensus 81 ~~~~L~~~~~~l~e 94 (97)
T d1dkza1 81 KMQELAQVSQKLME 94 (97)
T ss_dssp HHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998863
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.1e-10 Score=106.04 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHhhhHhhHhhHHHHHhhhhHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5911 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKK 1227 (1242)
Q Consensus 1148 l~~~e~~~~~~~~~~~~~~d~~~~~~~~~~n~le~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 1227 (1242)
||++||++|++++.++.++|+..|+..+++|++++++|.+++.|..++..++++++..|...++++..||.+++.+.++.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~~ 80 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQ 80 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q psy5911 1228 GNEDLLKISENIIKK 1242 (1242)
Q Consensus 1228 ~~~~l~~~~~~~~~~ 1242 (1242)
.++.|+..+.+++.|
T Consensus 81 ~~~~L~~~~~~~a~~ 95 (112)
T d1u00a1 81 AIKNVDKQTQDFAAR 95 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.06 E-value=1.9e-10 Score=113.80 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=101.1
Q ss_pred CCCcEEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHH
Q psy5911 826 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKE 905 (1242)
Q Consensus 826 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 905 (1242)
++++++||+|+||||||++++...+ ..+ +....+....|+.+++..+.+++..+|..... . .
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~~~----~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~~~~------~-------~ 64 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINLMD----MEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVP------F-------D 64 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEETTT----TEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCCCCC------H-------H
T ss_pred cCCCcEEEEEcCcCeEEEEEEECCC----eEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHhhhh------H-------H
Confidence 3567899999999999999997533 222 22223345579999999999888877652211 1 1
Q ss_pred HHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcC
Q psy5911 906 AAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 985 (1242)
Q Consensus 906 ~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s 985 (1242)
..+.+... . .... + .... -++.+.+.++++++.+...+...+... ...++.|+|+||+|
T Consensus 65 ~~~~~~~~-----~--~~~~-------g---~~~~-~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga 123 (161)
T d2fsja1 65 LAQEALSH-----P--VMFR-------Q---KQVG-GPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGS 123 (161)
T ss_dssp HHHHHTTS-----C--EEET-------T---EEEC-SHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTH
T ss_pred HHHHHHhc-----c--cccc-------c---ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHH
Confidence 11221110 0 1000 0 1111 245677777788888877777776542 34689999999999
Q ss_pred chHHHHHHHHhhhcccc--cccCCcchhhhhhHHHhh
Q psy5911 986 RMPLVQKMVSEFFEKEV--KKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 986 ~ip~v~~~l~~~f~~~v--~~~~~p~~aVa~GAa~~a 1020 (1242)
.+ +++.+++.|+... ..+.||..|.|+|--..|
T Consensus 124 ~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 124 NL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp HH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 87 7888899996543 345799999999986654
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.05 E-value=1.8e-10 Score=114.05 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=99.9
Q ss_pred CCCcEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q psy5911 186 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKE 265 (1242)
Q Consensus 186 ~~~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 265 (1242)
+++.++||+|+||||||++++...+ ..+ +....+....|+.+++..+.+++..++. .... ..
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~~~----~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~----~~~~---------~~ 64 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINLMD----MEP-VVELSFSLQIGVGDAISALSRKIAKETG----FVVP---------FD 64 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEETTT----TEE-CGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCC---------HH
T ss_pred cCCCcEEEEEcCcCeEEEEEEECCC----eEE-EEEEeccHhHHHHHHHHHHHHHHHHHHH----hhhh---------HH
Confidence 3567899999999999999986432 222 1122233457999999999988877664 2221 11
Q ss_pred HHHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCcc
Q psy5911 266 AAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 345 (1242)
Q Consensus 266 ~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 345 (1242)
..+.+. .. .... .. ... -.++.+.+.++++++.+...+...+... ...++.|+|+||+|
T Consensus 65 ~~~~~~----~~-~~~~--~g----------~~~-~~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga 123 (161)
T d2fsja1 65 LAQEAL----SH-PVMF--RQ----------KQV-GGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGS 123 (161)
T ss_dssp HHHHHT----TS-CEEE--TT----------EEE-CSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTH
T ss_pred HHHHHH----hc-cccc--cc----------ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHH
Confidence 111111 11 1110 00 111 1245677777777777777777776532 35689999999999
Q ss_pred ChHHHHHHHHHhccccc--ccCCCcchhhHhHHHHhh
Q psy5911 346 RMPLVQKMVSEFFEKEV--KKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 346 ~ip~v~~~l~~~f~~~~--~~~~~p~~ava~GAa~~a 380 (1242)
.+ +++.+++.|+... ..+.||..|+|+|--..|
T Consensus 124 ~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 124 NL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp HH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 87 7889999996543 345799999999976554
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=6.6e-10 Score=94.84 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHHHHhhhh--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhC
Q psy5911 1176 CKNEADSTISIVKKNLKD--ENTKITDEEKESIEKSISNLELLIKGD---DIELIKKGNEDLLKISENIIKK 1242 (1242)
Q Consensus 1176 ~~n~le~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~~ 1242 (1242)
++|+||+|||.+|..|.+ +...+++++++.|..+|+++++||+.+ +.++|++++++|+..|.|||.|
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k 73 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITK 73 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999964 678899999999999999999999976 6789999999999999999964
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.25 E-value=1.1e-05 Score=85.61 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHhhhh
Q psy5911 310 VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
+...+..+...+...+... .+++.|+++||.++.|++++.+++.++.++..+.+|.++.|+|||++|..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 187 IAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 3344444444444444432 34677999999999999999999999999999999999999999999864
|
| >d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Head domain of nucleotide exchange factor GrpE superfamily: Head domain of nucleotide exchange factor GrpE family: Head domain of nucleotide exchange factor GrpE domain: Head domain of nucleotide exchange factor GrpE species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=4.7e-07 Score=69.59 Aligned_cols=56 Identities=20% Similarity=0.403 Sum_probs=40.4
Q ss_pred ceecccCCCCCCcCccccccccccccccCCceEEEEEEEeCCcceEEecCCCCcccceEEEEec
Q psy5911 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE 685 (1242)
Q Consensus 622 ~~~i~~~g~~fdp~~h~a~~~~~~~~id~Gt~~~~~~v~~~g~~~ii~~~~g~~~~PS~v~~~~ 685 (1242)
|+.|++.|++|||++|||+++.+..+.+. ++++.++|+|=. -.++-.-|+.|....
T Consensus 1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~---~~I~~v~~~GY~-----~~~rvlRpA~V~V~k 56 (59)
T d1dkga1 1 VEVIAETNVPLDPNVHQAIAMVESDDVAP---GNVLGIMQKGYT-----LNGRTIRAAMVTVAK 56 (59)
T ss_dssp EEEECCCSSBCCTTSEEEEEEEECSSSCT---TBEEEEEECEEE-----ETTEEEECEEEEEEE
T ss_pred CceeCCCCCCCCHHHceEeeEecCCCCCC---CEEEEEEeCCcE-----ECCEEeeccEEEEec
Confidence 57899999999999999999877766664 458889988820 112223377776653
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=7.2e-05 Score=76.96 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=96.9
Q ss_pred EEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCC--HHHHHHHHH----
Q psy5911 832 VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGD--SLAMQRLKE---- 905 (1242)
Q Consensus 832 lV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~--~~~~~~L~~---- 905 (1242)
||+|+|.+.+.|+-+.-. +.+........+||.++++.|.++|..+-. +.... ......+..
T Consensus 5 lVVDiG~~~t~v~PV~eG-------~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-----~~~~~~~~~~~~~~ke~~~~ 72 (225)
T d2fxua2 5 IVLDSGDGVTHNVPIYEG-------YALPHAIMRLDLAGRDLTDYLMKILTERGY-----SFVTTAEREIVRDIKEKLCY 72 (225)
T ss_dssp EEEEECSSCEEEEEEETT-------EECGGGCEEESCCHHHHHHHHHHHHHHHTC-----CCCSHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcEEEEEEECC-------EEchhceEEEECcHHHHHHHHHHHHhhccC-----CcCCHHHHHHHHHHHHHHhh
Confidence 788999999999887521 222222233468999999999988865421 11111 011111111
Q ss_pred -----HHHHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHH---HHHHHH-----HHHHHHHHHHHHhcCCC-
Q psy5911 906 -----AAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES---LVEDLI-----SKSLKPCEVALNDAKID- 971 (1242)
Q Consensus 906 -----~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~---~~~~~~-----~~~~~~i~~~l~~~~~~- 971 (1242)
..|..+...+........+| + ...+++..+.|.- ++.|.. ..+.++|.+++..+..+
T Consensus 73 ~~~d~~~e~~~~~~~~~~~~~~~lp------d---g~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~ 143 (225)
T d2fxua2 73 VALDFENEMATAASSSSLEKSYELP------D---GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDI 143 (225)
T ss_dssp CCSSHHHHHHHHHHCSTTCEEEECT------T---SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHH
T ss_pred cccchhHHHhhcccCcccceeEECC------C---CCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcch
Confidence 11111111222222233332 1 1346666555532 222311 13566666676654422
Q ss_pred -ccCcceEEEecCcCchHHHHHHHHhhhc--------ccccccCCcchhhhhhHHHhhhh
Q psy5911 972 -KSKISEIILVGGQTRMPLVQKMVSEFFE--------KEVKKDINPDEAVAVGASVQAGV 1022 (1242)
Q Consensus 972 -~~~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~v~~~~~p~~aVa~GAa~~a~~ 1022 (1242)
+.-...|+|+||+|++|.+.++|...+. ..+..+.++..++=.||+++|..
T Consensus 144 r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 144 RKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred hhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 1125689999999999999999987551 23455667788999999999864
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=6.9e-05 Score=77.13 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=96.0
Q ss_pred EEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy5911 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 270 (1242)
Q Consensus 191 vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 270 (1242)
=||+|+|++.+.|+-+.-+ +.+........+||+++++.|.++|..+. .+... ... ....+.+
T Consensus 4 glVVDiG~~~t~v~PV~eG-------~~l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~-~~~----~~~~~~~ 66 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIYEG-------YALPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVT-TAE----REIVRDI 66 (225)
T ss_dssp EEEEEECSSCEEEEEEETT-------EECGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCS-HHH----HHHHHHH
T ss_pred EEEEEcCCCcEEEEEEECC-------EEchhceEEEECcHHHHHHHHHHHHhhcc-----CCcCC-HHH----HHHHHHH
Confidence 3788999999999887521 12222222245899999999988886432 12211 111 1122333
Q ss_pred hHHhc----------------CCceeeeeccccccCCCCCeeeEEEEcHHHHHH---HHHHHH-----HHHHHHHHHHHH
Q psy5911 271 KIELS----------------NAEQTDINLPYITADKNGPKHLNVKITRSKLES---LVEDLI-----SKSLKPCEVALN 326 (1242)
Q Consensus 271 K~~Ls----------------~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~---l~~~~~-----~~i~~~i~~~l~ 326 (1242)
|+.+. ........+| + ...+.+..+.|.- +++|.. ..+.++|.+.+.
T Consensus 67 ke~~~~~~~d~~~e~~~~~~~~~~~~~~~lp----d-----g~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~ 137 (225)
T d2fxua2 67 KEKLCYVALDFENEMATAASSSSLEKSYELP----D-----GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM 137 (225)
T ss_dssp HHHHCCCCSSHHHHHHHHHHCSTTCEEEECT----T-----SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHhhcccCcccceeEECC----C-----CCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhh
Confidence 33332 2222222332 1 2346676655532 222211 135566666666
Q ss_pred HcCCC--cCCcceEEEecCccChHHHHHHHHHhc--------ccccccCCCcchhhHhHHHHhhhh
Q psy5911 327 DAKID--KSKISEIILVGGQTRMPLVQKMVSEFF--------EKEVKKDINPDEAVAVGASVQAGV 382 (1242)
Q Consensus 327 ~~~~~--~~~i~~ViLvGG~s~ip~v~~~l~~~f--------~~~~~~~~~p~~ava~GAa~~a~~ 382 (1242)
....+ +.-...|+|+||+|.+|.+.++|.+.+ ...+..+.+|..++=.||+++|..
T Consensus 138 ~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 138 KCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp TSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred cCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 54322 112568999999999999999998654 123455667788999999999864
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=9e-05 Score=77.96 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=97.6
Q ss_pred EEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy5911 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 270 (1242)
Q Consensus 191 vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 270 (1242)
=||+|+|.+.++|+-+.-+ +.+.....-..+||.+++..|.++|.++ +.+...... ...++..
T Consensus 5 GlVVDiG~~~T~v~PV~eG-------~~l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~~ 67 (258)
T d1k8ka2 5 GTVIDSGDGVTHVIPVAEG-------YVIGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKAV 67 (258)
T ss_dssp EEEEEESSSCEEEEEEETT-------EECGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHHH
T ss_pred EEEEEcCCCcEEEEEEECC-------EEchhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHhH
Confidence 3788999999999987421 1111122224679999999998877532 222211100 1223333
Q ss_pred hHHhcCC-----------------ceeeeeccccccCCCCCeeeEEEEcHHHHHH---HHHHH------HHHHHHHHHHH
Q psy5911 271 KIELSNA-----------------EQTDINLPYITADKNGPKHLNVKITRSKLES---LVEDL------ISKSLKPCEVA 324 (1242)
Q Consensus 271 K~~Ls~~-----------------~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~---l~~~~------~~~i~~~i~~~ 324 (1242)
|+.++.. .......+ +........+.+..+.|.- ++.|- ...+.++|.++
T Consensus 68 ke~~~~v~~d~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~s 143 (258)
T d1k8ka2 68 KERYSYVCPDLVKEFNKYDTDGSKWIKQYTGI----NAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 143 (258)
T ss_dssp HHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEE----CTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHH
T ss_pred HhhhcccccchHHHHHhhcccccccccccccc----cccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHH
Confidence 3332211 01111111 1112234567777776632 22221 12366777888
Q ss_pred HHHcCCCcCC--cceEEEecCccChHHHHHHHHHhcc------------------------cccccCCCcchhhHhHHHH
Q psy5911 325 LNDAKIDKSK--ISEIILVGGQTRMPLVQKMVSEFFE------------------------KEVKKDINPDEAVAVGASV 378 (1242)
Q Consensus 325 l~~~~~~~~~--i~~ViLvGG~s~ip~v~~~l~~~f~------------------------~~~~~~~~p~~ava~GAa~ 378 (1242)
+..+..+... ...|+|+||+|.+|.+.++|.+.+. .++..+.++..++=.||++
T Consensus 144 i~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsi 223 (258)
T d1k8ka2 144 IQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSM 223 (258)
T ss_dssp HHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHH
T ss_pred HHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHH
Confidence 8776654333 6789999999999999998865441 1223344667788999999
Q ss_pred hhhh
Q psy5911 379 QAGV 382 (1242)
Q Consensus 379 ~a~~ 382 (1242)
+|..
T Consensus 224 la~l 227 (258)
T d1k8ka2 224 LAST 227 (258)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 8864
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.63 E-value=0.00026 Score=64.97 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=90.0
Q ss_pred cEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q psy5911 189 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE 268 (1242)
Q Consensus 189 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 268 (1242)
..+.++|+||||+|.+++.-. +.+.-..-+| .|+.++..+...| +++- +.-||
T Consensus 4 ~plaIlDlG~GStDasii~~~-----g~v~avhlAG----AG~mVTmlI~~eL--------Gl~d----------~~lAE 56 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAE-----GQITAVHLAG----AGNMVSLLIKTEL--------GLED----------LSLAE 56 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSS-----SCEEEEEEEC----CHHHHHHHHHHHH--------TCSC----------HHHHH
T ss_pred CceEEEEcCCCccchhhccCC-----CcEEEEEecC----CchhhHHHHHHHh--------CCCc----------HHHHH
Confidence 347899999999999998533 5566666666 6777776664432 2211 34577
Q ss_pred HHhHHhcCC-----------ceeeeecccccc---------CCCCCeeeEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy5911 269 KAKIELSNA-----------EQTDINLPYITA---------DKNGPKHLNVKITRSKLESLVEDLISKS-LKPCEVALND 327 (1242)
Q Consensus 269 ~~K~~Ls~~-----------~~~~i~i~~~~~---------~~~~~~~~~~~itr~~fe~l~~~~~~~i-~~~i~~~l~~ 327 (1242)
.+|+---.. ....+.-..+.. ..++...+.-.++-+++..+=...=+++ ..-+.++|+.
T Consensus 57 ~IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~ 136 (202)
T d1nbwa3 57 AIKKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQ 136 (202)
T ss_dssp HHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhh
Confidence 777631110 001110000000 0111122233345555554433333332 2234555554
Q ss_pred cCC--CcCCcceEEEecCccChHHHHHHHHHhc-------c-cccccCCCcchhhHhHHHHh
Q psy5911 328 AKI--DKSKISEIILVGGQTRMPLVQKMVSEFF-------E-KEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 328 ~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f-------~-~~~~~~~~p~~ava~GAa~~ 379 (1242)
... +..+|..|+|||||+.=.-|-+++.+.+ | -.+.-..-|..|||.|.++.
T Consensus 137 vsp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 137 VSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp SSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred cCCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 443 2357999999999997444444444443 2 24666778999999998763
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00013 Score=76.69 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred EEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHhh
Q psy5911 832 VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAK 911 (1242)
Q Consensus 832 lV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 911 (1242)
+|+|+|.+.+.|+-+.-. +.+........+||.+++..|.++|.++ +.+...... ...++..|
T Consensus 6 lVVDiG~~~T~v~PV~eG-------~~l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~~k 68 (258)
T d1k8ka2 6 TVIDSGDGVTHVIPVAEG-------YVIGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKAVK 68 (258)
T ss_dssp EEEEESSSCEEEEEEETT-------EECGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHHHH
T ss_pred EEEEcCCCcEEEEEEECC-------EEchhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHhHH
Confidence 788999999999988521 2222222235689999999998887642 112211100 11122222
Q ss_pred hhccC----------------C-ceeeEEeccccccCCCCeeeEEEEcHHHHHH---HHHHH------HHHHHHHHHHHH
Q psy5911 912 IELSN----------------A-EQTDINLPYITADKNGPKHLNVKITRSKLES---LVEDL------ISKSLKPCEVAL 965 (1242)
Q Consensus 912 ~~Ls~----------------~-~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~---~~~~~------~~~~~~~i~~~l 965 (1242)
+.+.. . .......+ +........+.+..+.|.- ++.|- ...+.++|.+++
T Consensus 69 e~~~~v~~d~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si 144 (258)
T d1k8ka2 69 ERYSYVCPDLVKEFNKYDTDGSKWIKQYTGI----NAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVI 144 (258)
T ss_dssp HHHCCCCSCHHHHHHHHHHSGGGTCEEEEEE----CTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHH
T ss_pred hhhcccccchHHHHHhhcccccccccccccc----cccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHH
Confidence 22111 0 01111221 1112234567777776632 22221 123667788888
Q ss_pred HhcCCCccC--cceEEEecCcCchHHHHHHHHhhhc------------------------ccccccCCcchhhhhhHHHh
Q psy5911 966 NDAKIDKSK--ISEIILVGGQTRMPLVQKMVSEFFE------------------------KEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 966 ~~~~~~~~~--i~~ViLvGG~s~ip~v~~~l~~~f~------------------------~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
..+..+... ...|+|+||+|.+|.+.++|...+. .++..+.++..++=.||+++
T Consensus 145 ~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsil 224 (258)
T d1k8ka2 145 QNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSML 224 (258)
T ss_dssp HHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHH
T ss_pred HhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHH
Confidence 876644333 6789999999999999998865552 12233446677889999998
Q ss_pred hhh
Q psy5911 1020 AGV 1022 (1242)
Q Consensus 1020 a~~ 1022 (1242)
|..
T Consensus 225 a~l 227 (258)
T d1k8ka2 225 AST 227 (258)
T ss_dssp TTS
T ss_pred HcC
Confidence 864
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.58 E-value=0.00035 Score=63.94 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=90.9
Q ss_pred cEEEEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q psy5911 189 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE 268 (1242)
Q Consensus 189 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 268 (1242)
..+.++|+||||+|.|++.-+ +.+.-..-+| .|+.++..+...| +++- +.-||
T Consensus 4 ~PlAIlDlGaGStDAsii~~~-----g~v~a~HlAG----AG~mVTmlI~seL--------Gl~d----------~~lAE 56 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIINPK-----GDIIATHLAG----AGDMVTMIIAREL--------GLED----------RYLAE 56 (203)
T ss_dssp SSEEEEEECSSEEEEEEECTT-----CCEEEEEEEC----SHHHHHHHHHHHH--------TCCC----------HHHHH
T ss_pred CceEEEEcCCCcccHHHhCCC-----CcEEEEEecC----cchHhHHHHHHhh--------CCCc----------HHHHH
Confidence 457899999999999998533 5566655666 6777776654332 2211 34577
Q ss_pred HHhHHhcCC-----------ceeeeeccccc---------cCCCCCeeeEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy5911 269 KAKIELSNA-----------EQTDINLPYIT---------ADKNGPKHLNVKITRSKLESLVEDLISKS-LKPCEVALND 327 (1242)
Q Consensus 269 ~~K~~Ls~~-----------~~~~i~i~~~~---------~~~~~~~~~~~~itr~~fe~l~~~~~~~i-~~~i~~~l~~ 327 (1242)
.+|+---.. .+..+.-..+. ...++...+.-.++-+++..+=...=+++ ..-+.++|+.
T Consensus 57 ~IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~ 136 (203)
T d2d0oa3 57 EIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQ 136 (203)
T ss_dssp HHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 777631110 00000000000 00111122222344455544433333332 2334555655
Q ss_pred cCC--CcCCcceEEEecCccChHHHHHHHHHhc-------c-cccccCCCcchhhHhHHHHh
Q psy5911 328 AKI--DKSKISEIILVGGQTRMPLVQKMVSEFF-------E-KEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 328 ~~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f-------~-~~~~~~~~p~~ava~GAa~~ 379 (1242)
... +..+|..|+|||||+.=.-|-+++.+.+ | -.+.-..-|..|||.|.++.
T Consensus 137 vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 137 VSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp HSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred cCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 432 3457999999999998555556666655 2 24566778999999998764
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.38 E-value=0.00099 Score=61.11 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=89.0
Q ss_pred EEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHH
Q psy5911 830 IIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK 909 (1242)
Q Consensus 830 ~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 909 (1242)
-+.++|+||||+|.+++.-. +.+.....+| .|+-++..+...| +++- +.-+|.
T Consensus 5 plaIlDlG~GStDasii~~~-----g~v~avhlAG----AG~mVTmlI~~eL--------Gl~d----------~~lAE~ 57 (202)
T d1nbwa3 5 PLAILDLGAGSTDAAIVNAE-----GQITAVHLAG----AGNMVSLLIKTEL--------GLED----------LSLAEA 57 (202)
T ss_dssp SEEEEEECSSEEEEEEECSS-----SCEEEEEEEC----CHHHHHHHHHHHH--------TCSC----------HHHHHH
T ss_pred ceEEEEcCCCccchhhccCC-----CcEEEEEecC----CchhhHHHHHHHh--------CCCc----------HHHHHH
Confidence 36889999999999999644 4555555555 5666666554332 2110 235666
Q ss_pred hhhhccCC-----------ceeeEEeccccc---------cCCCCeeeEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q psy5911 910 AKIELSNA-----------EQTDINLPYITA---------DKNGPKHLNVKITRSKLESLVEDLISKS-LKPCEVALNDA 968 (1242)
Q Consensus 910 ~K~~Ls~~-----------~~~~i~i~~~~~---------~~~~~~~~~~~itr~~fe~~~~~~~~~~-~~~i~~~l~~~ 968 (1242)
.|+---.. ....+.-..+.. ..++-..+.-.++-+++..+=...-++. ..-+.++|+..
T Consensus 58 IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~v 137 (202)
T d1nbwa3 58 IKKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQV 137 (202)
T ss_dssp HHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhc
Confidence 66531100 000000000000 0112122333455555555443333332 22345556544
Q ss_pred CC--CccCcceEEEecCcCchHHHHHHHHhhh-------c-ccccccCCcchhhhhhHHHh
Q psy5911 969 KI--DKSKISEIILVGGQTRMPLVQKMVSEFF-------E-KEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 969 ~~--~~~~i~~ViLvGG~s~ip~v~~~l~~~f-------~-~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
.. +..+|..|+|||||+.=.-|-+++.+.+ | -.+.-..-|..|||.|.++.
T Consensus 138 sp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 138 SPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp STTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 32 2357999999999998555555555554 2 24556678999999998763
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.00019 Score=71.43 Aligned_cols=147 Identities=21% Similarity=0.237 Sum_probs=81.4
Q ss_pred EEEEeCCcceeeeEEEEEeecCCceEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-----
Q psy5911 192 VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEA----- 266 (1242)
Q Consensus 192 lV~D~GggT~Dvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~----- 266 (1242)
||+|+|.+.+.++-+.-+ +.+........+||+++++.|.+++.+.- .......+......+...
T Consensus 2 lVVDiG~~~T~v~PV~dG-------~~l~~a~~~~~igG~~lt~~l~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~v~ 71 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVYEG-------FSLPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADFETVRMIKEKLCYVG 71 (190)
T ss_dssp CEEEECSSCEEEECEETT-------EECSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTHHHHHHHHHHHCCCC
T ss_pred EEEEcCCCcEEEEEeECC-------EEcccceEEEeccHHHHHHHHHHHHHhcC---CcccchHHHHHHHHHHhhhhhhc
Confidence 588999999998877421 11222222345899999999888775321 111111111111111111
Q ss_pred ----HHHHhHHhcCCceeeeeccccccCCCCCeeeEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCcC
Q psy5911 267 ----AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS---------KSLKPCEVALNDAKIDKS 333 (1242)
Q Consensus 267 ----~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~i~~~i~~~l~~~~~~~~ 333 (1242)
.+..+...+........+| ....+.+..+.|. +.+.+|+ .+.++|.+++..+..+..
T Consensus 72 ~~~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r 141 (190)
T d1k8kb1 72 YNIEQEQKLALETTVLVESYTLP---------DGRIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTR 141 (190)
T ss_dssp SSHHHHHHHHHHCSTTCEEEECT---------TSCEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTH
T ss_pred ccHHHHHHhhhcccceeeeeecC---------CCcEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHH
Confidence 0111111122222222322 1234677777665 2233332 267778888887765432
Q ss_pred C--cceEEEecCccChHHHHHHHHHhc
Q psy5911 334 K--ISEIILVGGQTRMPLVQKMVSEFF 358 (1242)
Q Consensus 334 ~--i~~ViLvGG~s~ip~v~~~l~~~f 358 (1242)
. ...|+|+||+|.+|.+.++|...+
T Consensus 142 ~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 142 SEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp HHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred HHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 2 678999999999999999997665
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.27 E-value=0.0015 Score=59.80 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=89.0
Q ss_pred EEEEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHH
Q psy5911 830 IIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK 909 (1242)
Q Consensus 830 ~vlV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 909 (1242)
.+.++|+|||++|.|++.-. +.+.-..-+| .|+-++..+...| +.+- +.-+|.
T Consensus 5 PlAIlDlGaGStDAsii~~~-----g~v~a~HlAG----AG~mVTmlI~seL--------Gl~d----------~~lAE~ 57 (203)
T d2d0oa3 5 PLAILDLGAGSTDASIINPK-----GDIIATHLAG----AGDMVTMIIAREL--------GLED----------RYLAEE 57 (203)
T ss_dssp SEEEEEECSSEEEEEEECTT-----CCEEEEEEEC----SHHHHHHHHHHHH--------TCCC----------HHHHHH
T ss_pred ceEEEEcCCCcccHHHhCCC-----CcEEEEEecC----cchHhHHHHHHhh--------CCCc----------HHHHHH
Confidence 47889999999999999644 4555555555 5666665553322 2111 335666
Q ss_pred hhhhccCC----------c-eeeEEeccccc---------cCCCCeeeEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q psy5911 910 AKIELSNA----------E-QTDINLPYITA---------DKNGPKHLNVKITRSKLESLVEDLISKS-LKPCEVALNDA 968 (1242)
Q Consensus 910 ~K~~Ls~~----------~-~~~i~i~~~~~---------~~~~~~~~~~~itr~~fe~~~~~~~~~~-~~~i~~~l~~~ 968 (1242)
.|+---.. + ...+.-..+.. ..++-..+.-.++-+++..+=...-++. ..-+.++|+..
T Consensus 58 IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~v 137 (203)
T d2d0oa3 58 IKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQV 137 (203)
T ss_dssp HHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 66531100 0 00000000000 0112122222344555554433332222 22344455543
Q ss_pred C--CCccCcceEEEecCcCchHHHHHHHHhhhc--------ccccccCCcchhhhhhHHHh
Q psy5911 969 K--IDKSKISEIILVGGQTRMPLVQKMVSEFFE--------KEVKKDINPDEAVAVGASVQ 1019 (1242)
Q Consensus 969 ~--~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~--------~~v~~~~~p~~aVa~GAa~~ 1019 (1242)
. -+..+|..|+|||||+.=--|-+++.+.+. -.+.-..-|..|||.|.++.
T Consensus 138 sP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 138 SPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp SSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred CCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 2 234579999999999986666677776662 24556678999999999764
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.26 E-value=0.00023 Score=70.80 Aligned_cols=147 Identities=21% Similarity=0.234 Sum_probs=83.3
Q ss_pred EEEeeCCCceEEEEEEEeecCCCceEEEEEecCCCCCCchHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHH----
Q psy5911 832 VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAA---- 907 (1242)
Q Consensus 832 lV~D~GggT~dvsi~~~~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~---- 907 (1242)
||+|+|.+.|.++-+.- | +.+........+||+++++.|.+++.+.-. .............+...+
T Consensus 2 lVVDiG~~~T~v~PV~d------G-~~l~~a~~~~~igG~~lt~~l~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~v~ 71 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVYE------G-FSLPHLTRRLDIAGRDITRYLIKLLLLRGY---AFNHSADFETVRMIKEKLCYVG 71 (190)
T ss_dssp CEEEECSSCEEEECEET------T-EECSTTCEEESCCHHHHHHHHHHHHHHTTC---CCCTTTTHHHHHHHHHHHCCCC
T ss_pred EEEEcCCCcEEEEEeEC------C-EEcccceEEEeccHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHhhhhhhc
Confidence 58899999999987752 1 222222233458999999998888764311 111111222222222111
Q ss_pred -----HHhhhhccCCceeeEEeccccccCCCCeeeEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCCcc
Q psy5911 908 -----EKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLIS---------KSLKPCEVALNDAKIDKS 973 (1242)
Q Consensus 908 -----e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~fe~~~~~~~~---------~~~~~i~~~l~~~~~~~~ 973 (1242)
+..+...+........+| ....+.+..+.|.- .+.+|+ .+.++|.+++..+..+..
T Consensus 72 ~~~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~~-~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r 141 (190)
T d1k8kb1 72 YNIEQEQKLALETTVLVESYTLP---------DGRIIKVGGERFEA-PEALFQPHLINVEGVGVAELLFNTIQAADIDTR 141 (190)
T ss_dssp SSHHHHHHHHHHCSTTCEEEECT---------TSCEEEECTHHHHT-GGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTH
T ss_pred ccHHHHHHhhhcccceeeeeecC---------CCcEEEEChhhccc-cccccChhhcCcccccHHHHHHHHHHhCCHhHH
Confidence 111111122222233332 12346677776652 233333 267788888887765432
Q ss_pred C--cceEEEecCcCchHHHHHHHHhhh
Q psy5911 974 K--ISEIILVGGQTRMPLVQKMVSEFF 998 (1242)
Q Consensus 974 ~--i~~ViLvGG~s~ip~v~~~l~~~f 998 (1242)
. ...|+|+||+|.+|.+.++|...+
T Consensus 142 ~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 142 SEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp HHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred HHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 2 678999999999999999998765
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.07 E-value=0.0019 Score=67.40 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhHHHhhhhh
Q psy5911 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVL 1023 (1242)
Q Consensus 949 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GAa~~a~~l 1023 (1242)
++...+..+...+...+... .+++.|+++||.++.|.+++.+++.++.++..+.+|+++.|+|||++|...
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 33444444444444444433 246789999999999999999999999999999999999999999999743
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=96.16 E-value=0.0061 Score=62.11 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=62.1
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCcceEEEecCcCchHHHHHHHHhhhcccccccCCcchhhhhhH
Q psy5911 938 NVKITRSKLESLVEDLISKSLKPCEVALN-DAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 1016 (1242)
Q Consensus 938 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~-~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~v~~~~~p~~aVa~GA 1016 (1242)
+..-+|.++-..+-+-+.--...+-+.++ ..+. .++.|.+.||.+++|.+.+++.+.+|.++....++ ++.|+||
T Consensus 113 ~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGa 188 (235)
T d1r59o2 113 TRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGA 188 (235)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHH
Confidence 34457777766544433333333333333 3443 47889999999999999999999999998876665 5889999
Q ss_pred HHhhhhhccccc
Q psy5911 1017 SVQAGVLSGVVK 1028 (1242)
Q Consensus 1017 a~~a~~l~~~~~ 1028 (1242)
|+.|+.-.|..+
T Consensus 189 A~la~~~~G~~~ 200 (235)
T d1r59o2 189 AYLAGLAVGFWK 200 (235)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHHHcCCCC
Confidence 999998776433
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.76 E-value=0.0095 Score=55.28 Aligned_cols=71 Identities=8% Similarity=0.000 Sum_probs=53.7
Q ss_pred CeecChHHHHHHHHHHHHHHHHhHhcCC--CCcEEEEecCCCCHHHHHHHHHH-HHHcCCCeeeeechHHHHHHHhc
Q psy5911 108 DKKLAPPQISAEILKKMKSTAETFLNEK--IEKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYG 181 (1242)
Q Consensus 108 ~~~~~~~~v~a~~L~~l~~~a~~~~~~~--~~~~vitVPa~f~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~ 181 (1242)
...+.-.+....++.++... .++.. -..+++|-|.......|+.+.+. .+..+++.+.+...|..+++++|
T Consensus 67 ~g~v~dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 67 HGIITNWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp TTEECCHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 34455567777777776653 23333 34599999999999999998775 56779999999999999998765
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.53 E-value=0.016 Score=54.76 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=85.2
Q ss_pred eEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEEecCCcEEEcHHHHHhhhhCCCchhhhchhhhCCCCCChHH
Q psy5911 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIV 83 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 83 (1242)
+.|-||+|+.++++++..+..|..+ +||+|+.... ..+|........... .....++|...
T Consensus 4 PavViD~GS~~~KaG~age~~P~~i--------~Ps~vg~~~~--~~~~~~~~~~~~~~~----~~~~~~ig~e~----- 64 (158)
T d1k8ka1 4 PACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKES--AKVGDQAQRRVMKGV----DDLDFFIGDEA----- 64 (158)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-------------CCCTT----GGGCEEEGGGG-----
T ss_pred CcEEEECCCCeEEEEECCCCCCCEE--------eccceeeccc--ccccCchhcccccCC----CccceecChhh-----
Confidence 4678999999999999866655443 4777776532 122332221110000 00011122110
Q ss_pred HHHhccCCeEEEecCCCCeEEEEcCeecChHHHHHHHHHHHHHHHHhHhcC--CCCcEEEEecCCCCHHHHHHHHHH-HH
Q psy5911 84 QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNE--KIEKAVITVPAYFNDSQRQATKDA-GK 160 (1242)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~L~~l~~~a~~~~~~--~~~~~vitVPa~f~~~qr~~~~~A-a~ 160 (1242)
.....+ .....+....+...+....++.++... .+.. .-..+++|-|...+..+|+.+.+. .+
T Consensus 65 ---~~~~~~--------~~~~pi~~G~i~dwd~~e~l~~~~~~~---~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE 130 (158)
T d1k8ka1 65 ---IEKPTY--------ATKWPIRHGIVEDWDLMERFMEQVIFK---YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 130 (158)
T ss_dssp ---TSCTTS--------EEECCEETTEESCHHHHHHHHHHHHHT---TTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ---hhCCCc--------cccccccCCeEecHHHHHHHHHHHHHH---hcccCCCCCceeeeecCCCCHHHHHHHHHHHhh
Confidence 000001 111223344455667777777665432 2332 345699999999999999988774 57
Q ss_pred HcCCCeeeeechHHHHHHHhccCC
Q psy5911 161 IAGLEVLRIINEPTAAALAYGLDK 184 (1242)
Q Consensus 161 ~AGl~~~~li~Ep~AAal~y~~~~ 184 (1242)
..+++-+.+...|..++++++...
T Consensus 131 ~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 131 SFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp TSCCSEEEEEEHHHHHHHHGGGST
T ss_pred hcCCCEEEEEchhhhhheeCCCCC
Confidence 779999999999999999987654
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.30 E-value=0.01 Score=60.33 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=57.9
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEecCccChHHHHHHHHHhcccccccCCCcchhhHhHHHHh
Q psy5911 301 ITRSKLES-LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQ 379 (1242)
Q Consensus 301 itr~~fe~-l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ip~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 379 (1242)
-+|.++-. +++.+.=.+...++..-+..+. .++.|.+.||.++.+.+.+.+.+.+|.++....++ ++.|+|||+.
T Consensus 116 ~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA~l 191 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAAYL 191 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHHHH
Confidence 45666543 3333333333333333333443 47789999999999999999999999998877666 4889999999
Q ss_pred hhhhcCC
Q psy5911 380 AGVLSGV 386 (1242)
Q Consensus 380 a~~l~~~ 386 (1242)
|+.-.+.
T Consensus 192 a~~~~G~ 198 (235)
T d1r59o2 192 AGLAVGF 198 (235)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 9887664
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.064 Score=45.62 Aligned_cols=46 Identities=46% Similarity=0.585 Sum_probs=38.4
Q ss_pred CchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5911 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLE 554 (1242)
Q Consensus 508 l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~a~ 554 (1242)
||+++|++|+.++++++++|...+++.+++|+++.++ -...+.+.+
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i-~~~e~~l~e 46 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLL-HSTRKQVEE 46 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7899999999999999999999999999999997775 233344433
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.2 Score=49.27 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=34.3
Q ss_pred CcceEEEecCccChHHHHHHHH----Hhc---ccccccCCCcchhhHhHHHHhh
Q psy5911 334 KISEIILVGGQTRMPLVQKMVS----EFF---EKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 334 ~i~~ViLvGG~s~ip~v~~~l~----~~f---~~~~~~~~~p~~ava~GAa~~a 380 (1242)
.++.|+++||.+..-.+++.+. +++ +.++..+.+...+.|.||++.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 4778999999776655555543 334 4567778889999999998753
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.11 Score=45.33 Aligned_cols=48 Identities=31% Similarity=0.321 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q psy5911 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETK 556 (1242)
Q Consensus 508 l~~eei~~~~~~~~~~~~~d~~~~e~~e~~~~~~~~~~~~~~~~~a~~~ 556 (1242)
||+++|++|+.+++.++.+|...+++.+.+|++++++ ..+.+.+.+..
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i-~~~e~~L~e~~ 48 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL-ESLHGALAADA 48 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhH
Confidence 7899999999999999999999999999999998775 34445554443
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=91.91 E-value=0.44 Score=46.12 Aligned_cols=32 Identities=3% Similarity=-0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechHHHHHHHh
Q psy5911 149 DSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180 (1242)
Q Consensus 149 ~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~y 180 (1242)
....+.+.++.+.+|+++..++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 44578889999999999999999999999864
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.98 Score=44.03 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=34.7
Q ss_pred CcceEEEecCcCchHHHHHHHH----hhh---cccccccCCcchhhhhhHHHhh
Q psy5911 974 KISEIILVGGQTRMPLVQKMVS----EFF---EKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 974 ~i~~ViLvGG~s~ip~v~~~l~----~~f---~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
.++.|+++||.+..-.+++.+. +++ +.++..+.+...+.|.||.+.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 4788999999776655555553 334 4567778899999999998753
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=86.50 E-value=0.72 Score=46.73 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=38.9
Q ss_pred CcceEEEecCc-CchHHHHHHHHhhh---cccccccCCcchhhhhhHHHhh
Q psy5911 974 KISEIILVGGQ-TRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASVQA 1020 (1242)
Q Consensus 974 ~i~~ViLvGG~-s~ip~v~~~l~~~f---~~~v~~~~~p~~aVa~GAa~~a 1020 (1242)
++..|++.||. +..|.+++.+++++ +.++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 45678888885 66999999999988 3567778889999999999875
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=86.44 E-value=0.76 Score=46.51 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=39.0
Q ss_pred CcceEEEecCc-cChHHHHHHHHHhc---ccccccCCCcchhhHhHHHHhh
Q psy5911 334 KISEIILVGGQ-TRMPLVQKMVSEFF---EKEVKKDINPDEAVAVGASVQA 380 (1242)
Q Consensus 334 ~i~~ViLvGG~-s~ip~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~~a 380 (1242)
++..|++.||. +..|.+++.+++++ +.++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 35688999985 66999999999988 4567778889999999999875
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.80 E-value=0.95 Score=41.95 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHHHHHhHhCC--CCCcEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHccCCC
Q psy5911 752 APPQISAEILKKMKSTAETFLNE--KIEKAVITVPAYFNDSQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDK 824 (1242)
Q Consensus 752 ~~~~v~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~~~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~ 824 (1242)
.--+....++.++.. ..+.. .-..+++|-|...+..+|+.+-+ ..+..+++.+.+...|..++++++...
T Consensus 82 ~dwd~~e~l~~~~~~---~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 82 EDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp SCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGST
T ss_pred ecHHHHHHHHHHHHH---HhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCC
Confidence 334455555554432 22332 23469999999999999998877 457889999999999999999987654
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.60 E-value=0.79 Score=41.54 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCC--CcEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHcc
Q psy5911 753 PPQISAEILKKMKSTAETFLNEKI--EKAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAAALAYG 821 (1242)
Q Consensus 753 ~~~v~a~~L~~l~~~a~~~~~~~~--~~~VitVPa~~~~~qr~~~~~A-a~~AGl~~~~li~Ep~AAal~y~ 821 (1242)
--+....++.++... .++... ..+++|-|...+...|+.|.+. .+..+++.+.+...|..+++++|
T Consensus 72 dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 72 NWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp CHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 345556666665542 333332 3599999999999999999875 57889999999999999998765
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=83.14 E-value=13 Score=38.00 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=17.3
Q ss_pred eEEEEEcCccceEEEEEECC
Q psy5911 4 KIIGIDLGTTNSCVAVLNNG 23 (1242)
Q Consensus 4 ~vvGID~GTt~s~va~~~~g 23 (1242)
+.++||+|.|++++++++..
T Consensus 2 y~L~~DIGGT~ir~glvd~~ 21 (319)
T d1sz2a1 2 YALVGDVGGTNARLALCDIA 21 (319)
T ss_dssp EEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEEChhheeeEEEECC
Confidence 56999999999999998644
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=81.64 E-value=0.53 Score=40.97 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHhHhcCC---CC--cEEEEecCCCCHHHHHHHHHHHHHcCCCeeeeechHHHHHHH
Q psy5911 113 PPQISAEILKKMKSTAETFLNEK---IE--KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179 (1242)
Q Consensus 113 ~~~v~a~~L~~l~~~a~~~~~~~---~~--~~vitVPa~f~~~qr~~~~~Aa~~AGl~~~~li~Ep~AAal~ 179 (1242)
++++...+.+.+.+..+. .+.. +. .+.+.+|.......+..+.... -.+..+.+.|+..||++.
T Consensus 42 ~~~~~~~i~~~i~~~~~~-ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 42 IAKSWQAVLSTLEAAFQQ-AGLPAAPASACAIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCChhhhceeEEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 455555555555554433 2222 12 3567888887777666665432 234578899999999886
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