Psyllid ID: psy5915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
REQIRPGRESNPRPSAYKADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEcccEEEEEcccccEEEEEEcccccHHHHHHHHcccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHccccccccEEEEEEEEEEEEccEEEEEcccccEEEEEEcccccHHHHHHHccccEEEccccccccHccc
Coil and Loop (DISEMBL)
reqirpgresnprpsaykadalptkptrlgltalssdvlsrdcvfevdkerGLTLIEiaegvevpeiivstgcdfavspdlkpmgqvet
Flexible Loop (DISEMBL)
reqirpgresnprpsaykadalptkptrlgltalssdvlsrdCVFEVDKERGLTLieiaegvevpeIIVSTgcdfavspdlkpmgqvet
Low Complexity Region (SEG)
REQIRPGRESNPRPSAYKADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET
Disordered region (IsUnstruct)
****************************LGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAV************
Disordered Region (DISOPRED)
****************YKADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMG****
Disordered Region (DISEMBL)
***************AYKADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET
Disordered Region (DISPRO)
****************Y*ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
REQIRPGRESNPRPSAYKADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
B2GV06	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.584	0.1	0.576	7e-11
Q9D0K2	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.584	0.1	0.576	1e-10
P55809	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.561	0.096	0.56	2e-10
Q29551	520	Succinyl-CoA:3-ketoacid c	yes	N/A	0.584	0.1	0.576	4e-10
Q9JJN4	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.573	0.098	0.490	7e-09
Q9ESL0	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.573	0.098	0.490	8e-09
Q5XIJ9	520	Succinyl-CoA:3-ketoacid c	no	N/A	0.584	0.1	0.442	2e-08
Q9BYC2	517	Succinyl-CoA:3-ketoacid c	no	N/A	0.561	0.096	0.5	3e-07
Q09450	521	Probable succinyl-CoA:3-k	yes	N/A	0.573	0.097	0.450	2e-05

>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VDK+ GLTLIE+ EG+ V +I  STGCDFAVSP+L PM Q+ T
Sbjct: 469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIRKSTGCDFAVSPNLMPMQQIST 520

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: 5

>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Mus musculus GN=Oxct1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VDK+ GLTLIE+ EG+ V +I  STGCDFAVSP+L PM Q+ T
Sbjct: 469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQIST 520

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct: 469 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Sus scrofa GN=OXCT1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD ++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 469 IITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 520

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9JJN4|SCO2A_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial OS=Mus musculus GN=Oxct2a PE=2 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++   VFEV+  +GLTL+E+ EG  V +I  +T C FAVSP+LKPM Q++
Sbjct: 467 IITEKAVFEVNHSKGLTLVELWEGSSVDDIKATTACSFAVSPNLKPMQQIK 517

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9ESL0|SCO2B_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial OS=Mus musculus GN=Oxct2b PE=2 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++   VFEV+  +GLTL+E+ EG  V +I  +T C FAVSP+LKPM Q++
Sbjct: 467 IITEKAVFEVNHSKGLTLVELWEGSSVDDIKATTACSFAVSPNLKPMQQIK 517

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q5XIJ9|SCO2A_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial OS=Rattus norvegicus GN=Oxct2a PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 37/52 (71%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VFEVD+ +GL L+E+ EG  + E+  +TGC F V P+LKPM Q+++
Sbjct: 467 IITEKAVFEVDRSKGLKLVELWEGSSLDEVKATTGCSFKVCPNLKPMQQIKS 518

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity). Probably play and important roles in the energy metabolism of spermatozoa.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial OS=Homo sapiens GN=OXCT2 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF+V +++ LTL E+ EG+ V +I  STGC FAVSP+L+PM QV
Sbjct: 466 IITEKAVFDVHRKKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQV 515

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid coenzyme A transferase, mitochondrial OS=Caenorhabditis elegans GN=C05C10.3 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 36  SDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQ 86
           S +++   VF+VD + GLTLIE+ + + V +I   T C F +S +LKPMGQ
Sbjct: 465 SRIITDMAVFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMGQ 515

Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
170052272	515	succinyl-coa:3-ketoacid-coenzyme a trans	0.561	0.097	0.7	2e-12
157128446	456	succinyl-coa:3-ketoacid-coenzyme a trans	0.573	0.111	0.666	5e-12
312383545	978	hypothetical protein AND_03297 [Anophele	0.561	0.051	0.64	9e-11
158295326	524	AGAP006096-PA [Anopheles gambiae str. PE	0.584	0.099	0.596	3e-10
405975710	354	Succinyl-CoA:3-ketoacid-coenzyme A trans	0.584	0.146	0.538	4e-10
395511446	445	PREDICTED: succinyl-CoA:3-ketoacid-coenz	0.584	0.116	0.615	5e-10
193659714	537	PREDICTED: succinyl-CoA:3-ketoacid-coenz	0.573	0.094	0.568	1e-09
427789327	513	Putative succinyl-coa:alpha-ketoacid-coa	0.573	0.099	0.588	1e-09
321478252	522	hypothetical protein DAPPUDRAFT_220335 [	0.561	0.095	0.6	1e-09
291395294	520	PREDICTED: 3-oxoacid CoA transferase 1 [	0.584	0.1	0.576	2e-09

>gi|170052272|ref|XP_001862147.1| succinyl-coa:3-ketoacid-coenzyme a transferase [Culex quinquefasciatus] gi|167873172|gb|EDS36555.1| succinyl-coa:3-ketoacid-coenzyme a transferase [Culex quinquefasciatus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF VD+ERGLTL EIA+GV V EII STGC+F VSPDLKPMGQV
Sbjct: 464 IITEKAVFNVDRERGLTLAEIADGVTVEEIITSTGCNFEVSPDLKPMGQV 513

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128446|ref|XP_001661431.1| succinyl-coa:3-ketoacid-coenzyme a transferase [Aedes aegypti] gi|108872573|gb|EAT36798.1| AAEL011137-PA [Aedes aegypti]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++   VF+VD+ERGL L EIA+GV V E+I STGC+F VSPDLKPMGQVE
Sbjct: 405 IITEKAVFDVDQERGLILKEIADGVSVEEVITSTGCNFEVSPDLKPMGQVE 455

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383545|gb|EFR28596.1| hypothetical protein AND_03297 [Anopheles darlingi]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF VDKE+GLTL+E+AE   V E+I STGCDF+VSPDLK MGQV
Sbjct: 926 IVTEKAVFNVDKEQGLTLMELAEDCTVEEVITSTGCDFSVSPDLKKMGQV 975

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295326|ref|XP_316153.4| AGAP006096-PA [Anopheles gambiae str. PEST] gi|157015983|gb|EAA11282.4| AGAP006096-PA [Anopheles gambiae str. PEST]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF VDKERGLTL+E+AE   V E+I STGC+F+VSPDLK M QV++
Sbjct: 472 IITEKAVFSVDKERGLTLMELAEDCTVEEVITSTGCEFSVSPDLKKMAQVDS 523

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405975710|gb|EKC40259.1| Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Crassostrea gigas]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 43/52 (82%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++  CVFEVDKE+GL L EIAE  ++P I+ +TGC+F V+P++KPMGQ+++
Sbjct: 303 IITDKCVFEVDKEKGLILTEIAETEDIPSIVGATGCEFVVAPEVKPMGQIKS 354

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|395511446|ref|XP_003759970.1| PREDICTED: succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial [Sarcophilus harrisii]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VDKE+GLTLIEI EG+ V +I  STGCDFAVSP L PM Q+ T
Sbjct: 394 IITEKAVFDVDKEKGLTLIEIWEGLTVDDIKKSTGCDFAVSPKLMPMKQIVT 445

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193659714|ref|XP_001943295.1| PREDICTED: succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial-like [Acyrthosiphon pisum]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 41/51 (80%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++  CVF+VD E GLTL+EIA+GVE+ +I+ STGC+F  + +LK MGQVE
Sbjct: 487 IITEKCVFDVDPENGLTLVEIADGVEIVDIVQSTGCEFVKADNLKIMGQVE 537

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789327|gb|JAA60115.1| Putative succinyl-coa:alpha-ketoacid-coa transferase [Rhipicephalus pulchellus]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 42/51 (82%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++  CVFEV++++GLTLIEIA+G++V +I  ST C F VSP+LKPM QVE
Sbjct: 462 IITEKCVFEVNEKKGLTLIEIADGLKVDDITNSTACPFEVSPNLKPMQQVE 512

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478252|gb|EFX89209.1| hypothetical protein DAPPUDRAFT_220335 [Daphnia pulex]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VFEV K RGL L E+AEGV V E++ +TGC F VSPDLKPMGQ+
Sbjct: 470 IITEKAVFEVAKGRGLVLTELAEGVTVQEVVDATGCMFEVSPDLKPMGQI 519

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291395294|ref|XP_002714049.1| PREDICTED: 3-oxoacid CoA transferase 1 [Oryctolagus cuniculus]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VDK++GLTLIE+ EG+ V +I  STGCDFAVSP L PM Q+ T
Sbjct: 469 IITEKAVFDVDKKKGLTLIELWEGLTVEDIQKSTGCDFAVSPKLMPMQQITT 520

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
UNIPROTKB|B7Z528	123	OXCT1 "Succinyl-CoA:3-ketoacid	0.561	0.406	0.56	7.4e-11
UNIPROTKB|E9PDW2	334	OXCT1 "Succinyl-CoA:3-ketoacid	0.561	0.149	0.56	2.8e-10
MGI|MGI:1914291	520	Oxct1 "3-oxoacid CoA transfera	0.584	0.1	0.576	3.3e-10
RGD|1584008	520	Oxct1 "3-oxoacid CoA transfera	0.584	0.1	0.576	3.3e-10
UNIPROTKB|F1PJ13	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.584	0.1	0.557	7e-10
UNIPROTKB|P55809	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.561	0.096	0.56	7e-10
UNIPROTKB|Q29551	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.584	0.1	0.576	8.9e-10
UNIPROTKB|Q5R5W4	520	DKFZp459B1627 "Succinyl-CoA:3-	0.561	0.096	0.56	8.9e-10
UNIPROTKB|Q24JZ7	520	OXCT1 "Succinyl-CoA:3-ketoacid	0.584	0.1	0.538	2.4e-09
FB|FBgn0035298	516	CG1140 [Drosophila melanogaste	0.561	0.096	0.58	5e-09

UNIPROTKB|B7Z528 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
             +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct:    72 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 121

GO:0005739 "mitochondrion" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

GO:0071229 "cellular response to acid" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

UNIPROTKB|E9PDW2 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
             +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct:   283 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 332

GO:0008410 "CoA-transferase activity" evidence=IEA

MGI|MGI:1914291 Oxct1 "3-oxoacid CoA transferase 1" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
             +++   VF+VDK+ GLTLIE+ EG+ V +I  STGCDFAVSP+L PM Q+ T
Sbjct:   469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQIST 520

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISO;IDA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0042182 "ketone catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046950 "cellular ketone body metabolic process" evidence=ISO;IDA

GO:0046952 "ketone body catabolic process" evidence=IMP

GO:0071229 "cellular response to acid" evidence=ISO

GO:0071333 "cellular response to glucose stimulus" evidence=ISO

RGD|1584008 Oxct1 "3-oxoacid CoA transferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
             +++   VF+VDK+ GLTLIE+ EG+ V +I  STGCDFAVSP+L PM Q+ T
Sbjct:   469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIRKSTGCDFAVSPNLMPMQQIST 520

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0007420 "brain development" evidence=IEP

GO:0007507 "heart development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISO;IDA

GO:0008410 "CoA-transferase activity" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0014823 "response to activity" evidence=IEP

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0042182 "ketone catabolic process" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042594 "response to starvation" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0046950 "cellular ketone body metabolic process" evidence=IEP;ISO

GO:0046952 "ketone body catabolic process" evidence=IEA;ISO

GO:0060612 "adipose tissue development" evidence=IEP

GO:0071229 "cellular response to acid" evidence=IMP

GO:0071333 "cellular response to glucose stimulus" evidence=IMP

UNIPROTKB|F1PJ13 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Canis lupus familiaris (taxid:9615)]

 Score = 151 (58.2 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
             +++   VF+VD ++GLTLIE+ EG+ V +I  STGCDFAVSP L PM Q+ T
Sbjct:   469 IITEKAVFDVDNKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLMPMQQITT 520

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IEA

UNIPROTKB|P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
             +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct:   469 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042594 "response to starvation" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0060612 "adipose tissue development" evidence=IEA

GO:0071229 "cellular response to acid" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA;NAS

GO:0042803 "protein homodimerization activity" evidence=NAS

GO:0046950 "cellular ketone body metabolic process" evidence=IMP;TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046952 "ketone body catabolic process" evidence=TAS

UNIPROTKB|Q29551 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 8.9e-10, P = 8.9e-10
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
             +++   VF+VD ++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct:   469 IITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 520

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS;IDA

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

UNIPROTKB|Q5R5W4 DKFZp459B1627 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Pongo abelii (taxid:9601)]

 Score = 150 (57.9 bits), Expect = 8.9e-10, P = 8.9e-10
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
             +++   VF+VDK++GLTL+E+ EG+ V +I  STGCDFAVSP L PM Q+
Sbjct:   469 IITEKAVFDVDKKKGLTLVELWEGLTVGDIQKSTGCDFAVSPKLMPMQQI 518

GO:0005739 "mitochondrion" evidence=ISS

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

UNIPROTKB|Q24JZ7 OXCT1 "Succinyl-CoA:3-ketoacid-coenzyme A transferase" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
             +++   VF+VD ++GLTLIE+ EG+ V +I  STGCDF VSP L PM Q+ T
Sbjct:   469 IITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFTVSPKLIPMRQIST 520

GO:0046950 "cellular ketone body metabolic process" evidence=ISS

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=IEA

GO:0042182 "ketone catabolic process" evidence=IEA

FB|FBgn0035298 CG1140 [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 29/50 (58%), Positives = 36/50 (72%)

Query:    38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
             ++S   VF V+K  GLTLIE+AEG  V +II STG  F VSP+LK MGQ+
Sbjct:   465 IISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGAKFTVSPNLKKMGQI 514

GO:0008260 "3-oxoacid CoA-transferase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0046952 "ketone body catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D0K2	SCOT1_MOUSE	2, ., 8, ., 3, ., 5	0.5769	0.5842	0.1	yes	N/A
P55809	SCOT1_HUMAN	2, ., 8, ., 3, ., 5	0.56	0.5617	0.0961	yes	N/A
Q29551	SCOT1_PIG	2, ., 8, ., 3, ., 5	0.5769	0.5842	0.1	yes	N/A
B2GV06	SCOT1_RAT	2, ., 8, ., 3, ., 5	0.5769	0.5842	0.1	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
COG2057	225	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA tra	3e-05
TIGR02428	207	TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferas	3e-04
COG4670	527	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA	0.002

>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 43  CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPM 84
            VFE D    LTL+E+A GV + +++  TG +F V+  ++  
Sbjct: 179 AVFEFDPGGELTLVELAPGVTIEDVVEKTGAEFKVADAVEET 220

Length = 225

>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 28  RLGLTALS--SDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAV 77
            L LT       +++   VFEV    GL L E+A GV V E+   T  D  +
Sbjct: 157 TLPLTGAKCVDRIVTELAVFEVTDG-GLILRELAPGVTVEELQAKTEADLII 207

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144. Length = 207

>gnl|CDD|227016 COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)

Query: 43  CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDF--AVSPDLKPM 84
            VF++    GLTLIEIA GV++ + I+    +F   ++ DLK M
Sbjct: 464 AVFKL-TPDGLTLIEIAPGVDLEKDILDQ-MEFEPIIADDLKEM 505

Length = 527

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
COG2057	225	AtoA Acyl CoA:acetate/3-ketoacid CoA transferase,	99.85
KOG3822|consensus	516		99.81
TIGR02428	207	pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit	99.6
COG4670	527	Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid	98.91
PF01144	217	CoA_trans: Coenzyme A transferase; InterPro: IPR00	94.2

>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

Probab=99.85  E-value=1.1e-21  Score=147.71  Aligned_cols=67  Identities=27%  Similarity=0.396  Sum_probs=61.9

Q ss_pred             CccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeecCCCCCCCc
Q psy5915          20 DALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQ   86 (89)
Q Consensus        20 ~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m~~   86 (89)
                      |++++|+||||+.+||++||||||||+|+++++|+|.|+|||+|+|||+++|||+|++++.+.+|+.
T Consensus       156 ki~~~ctlplt~~~~v~~iiTdl~V~~~~~~~~~~l~el~pgvT~e~V~~~T~~~~~~~~~~~~~~~  222 (225)
T COG2057         156 KILKECTLPLTGNGCVDRVITDLAVFEFDPGGELTLVELAPGVTIEDVVEKTGAEFKVADAVEETRA  222 (225)
T ss_pred             cccCcccccccCCCCceEEEeccEEEEecCCCeEEEEEeCCCCCHHHHHhhcCceEEeccccccccc
Confidence            5899999999999999999999999999555569999999999999999999999999998877654

>KOG3822|consensus

Probab=99.81  E-value=1e-20  Score=151.88  Aligned_cols=71  Identities=42%  Similarity=0.680  Sum_probs=67.8

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeecCCCCCCCcccC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET   89 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m~~~~~   89 (89)
                      ++|+.+|+|||||++||++||||+|||++|...+|+|+|+..|.|+|||+..||++|.||++++.|+|++.
T Consensus       446 pKIme~C~lPLTGK~~v~rIItekAVFdV~~k~gLTLiE~~eglTVDDi~ksTgc~F~vSpnLkpM~Qi~~  516 (516)
T KOG3822|consen  446 PKIMEKCTLPLTGKGCVDRIITEKAVFDVDKKKGLTLIELWEGLTVDDIKKSTGCKFAVSPNLKPMQQIAP  516 (516)
T ss_pred             chhhhhccccccCcchHhhhhhhheeEEeecCCCcEEeeeccCCcHHHHHhccCcceeeCCCccccccCCC
Confidence            56888999999999999999999999999888899999999999999999999999999999999999863

>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit

Probab=99.60  E-value=1.8e-15  Score=111.58  Aligned_cols=57  Identities=30%  Similarity=0.377  Sum_probs=53.3

Q ss_pred             CccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceee
Q psy5915          20 DALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAV   77 (89)
Q Consensus        20 ~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~v   77 (89)
                      +|+++|++|+|+.++++.||||+|||++++ .+|+|.|+|||+|+|||+++|||+|.+
T Consensus       151 ~iv~~~~~~~t~~~~v~~vVTe~gV~~l~~-~~l~L~~~~pgv~~~dv~~~tg~~l~~  207 (207)
T TIGR02428       151 KILKECTLPLTGAGCVDRIVTELAVFEVTD-GGLILRELAPGVTVEELQAKTEADLII  207 (207)
T ss_pred             EEcccCCCccCCCCcccEEECCCEEEEEeC-CcEEEEEECCCCCHHHHHHhcCCceeC
Confidence            588999999999999999999999999954 499999999999999999999999974

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.

>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]

Probab=98.91  E-value=1.5e-09  Score=89.80  Aligned_cols=49  Identities=35%  Similarity=0.544  Sum_probs=46.9

Q ss_pred             EEEcCceEEEeccCCcEEEEEecCCCCHH-HHHHhhCCceeecCCCCCCCc
Q psy5915          37 DVLSRDCVFEVDKERGLTLIEIAEGVEVP-EIIVSTGCDFAVSPDLKPMGQ   86 (89)
Q Consensus        37 ~IITdlaVf~~d~~~~l~L~ei~pGvt~e-eV~~~Tg~~l~va~~l~~m~~   86 (89)
                      ..|||+|||++ ++++|.|+|+|||++++ ||+.+++|++.|+++++.|++
T Consensus       458 ~YVTERaVF~L-t~~GL~L~EIAPGvDlekDIL~qmef~piia~~Lk~MD~  507 (527)
T COG4670         458 LYVTERAVFKL-TPDGLTLIEIAPGVDLEKDILDQMEFEPIIADDLKEMDE  507 (527)
T ss_pred             EEEEeeEEEEE-cCCCEEEEEecCCCChhhhHHhccCCCccccccccccCH
Confidence            79999999999 88999999999999998 999999999999999999964

>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another

Probab=94.20  E-value=0.0086  Score=43.30  Aligned_cols=48  Identities=17%  Similarity=0.023  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCcc--EEEcCceEEEeccC-CcEEEEEecCCCCHHHHHHh
Q psy5915          23 PTKPTRLGLTALSS--DVLSRDCVFEVDKE-RGLTLIEIAEGVEVPEIIVS   70 (89)
Q Consensus        23 ~~CtlPLTg~~~V~--~IITdlaVf~~d~~-~~l~L~ei~pGvt~eeV~~~   70 (89)
                      -.++.+......+.  ..+|.++|+++++. +.+.+..++||+++|+|.++
T Consensus       167 ~~~~~~~~~~~~~a~a~~~tiv~ve~iv~~~~~~~~~~~iPg~~Vd~Vvea  217 (217)
T PF01144_consen  167 FEGSPGHFDDPAIAMAAKITIVTVEEIVEEGRRDPLRVVIPGVLVDAVVEA  217 (217)
T ss_dssp             SSGSSHTTHSHHHHHCEEEEEEEEEEEECTTTSEEEEEEBTGGGHSEEEET
T ss_pred             EeCCCCccccccccccceEEEEEEEEEeccCCccceEEEeCCCchHHeEeC
Confidence            34455555544443  89999999999655 48999999999999988653

They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	89
2nrb_A	481	C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		9e-12
2nrc_A	481	C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transfer		9e-12
1o9l_A	481	Succinate:coenzyme-A Transferase (Pig Heart) Length		1e-11
3oxo_A	488	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		2e-11
3dlx_A	489	Crystal Structure Of Human 3-Oxoacid Coa Transferas		2e-11
1ooz_A	475	Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Tran		2e-11
1m3e_A	481	Succinyl-Coa:3-Ketoacid Coa Transferase From Pig He		7e-11

>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481

>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Length = 481

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481

>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart) Length = 481

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481

>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart Covalently Bound To Coa Length = 488

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM Q+E
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQLE 480

>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1 Length = 489

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct: 431 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 480

>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase From Pig Heart Length = 475

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 424 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 475

>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart (Selenomethionine) Length = 481

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L P  QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPXQQVTT 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	4e-17
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	4e-13
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	2e-09
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	1e-08

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Length = 481

 Score = 73.3 bits (180), Expect = 4e-17
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 43  CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
            VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 435 AVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Length = 531

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 43  CVFEVDKERGLTLIEIAEGVEV-PEIIVSTGCDFAVSPDLKPMGQ 86
            VF + ++ GL LIEIA GV++  +I+        +SP+LK M +
Sbjct: 471 AVFTLKED-GLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDE 514

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Length = 260

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 15  SAYKADALPTKPTRLGLTALS--SDVLSRDCVFEVDKERG-LTLIEIAEGVEVPEIIVST 71
           ++      P    RLGL        V++   + + D++   + L          +++ +T
Sbjct: 164 TSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDVLENT 223

Query: 72  GCDFAVSPDLK 82
           G D  VS  ++
Sbjct: 224 GFDLDVSKAVE 234

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B Length = 207

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 43  CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVS 78
            VFE      + L+E+ EGV + ++   T  +F V 
Sbjct: 172 AVFEFSNN-AMKLVELQEGVSLDQVKEKTEAEFEVR 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	99.79
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	99.74
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	99.68
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	99.55
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	98.36
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	97.96
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	97.31
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	97.16
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	97.16
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	97.07
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	96.57
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	96.49
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	94.98
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	85.62

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=99.79  E-value=7.7e-20  Score=147.43  Aligned_cols=71  Identities=44%  Similarity=0.671  Sum_probs=67.0

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeecCCCCCCCcccC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET   89 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m~~~~~   89 (89)
                      .+|+++|++|+|+.++|++||||+|||++|++++|+|+|+|||+|+|||+++|||++.+++++++|+|+++
T Consensus       411 ~~Iv~~~~~~~t~~~~v~~vVTE~gV~~l~~~~gl~L~eiapGv~~edv~~~t~~~~~v~~~l~~m~~~~~  481 (481)
T 3k6m_A          411 HKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT  481 (481)
T ss_dssp             BSEESSCSSCCSBSSCCCEEECSSEEEEEETTTEEEEEEECTTCCHHHHHHTCBSCCEEEEEEEECCCCC-
T ss_pred             eEEecccccCCCCCCcceEEEcCcEEEEecCCCcEEEEEeCCCCCHHHHHHhcCCceEeCCCcccCCCCCC
Confidence            46899999999999999999999999999767899999999999999999999999999999999999875

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B

Probab=99.74  E-value=3e-18  Score=125.45  Aligned_cols=59  Identities=20%  Similarity=0.342  Sum_probs=55.5

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeec
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVS   78 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va   78 (89)
                      .+|+++|++|+|+.++|++||||+|||++ .+++|+|+|+|||+|+|||+++|||+|.++
T Consensus       148 ~kiv~~~~~~~t~~~~v~~vVTe~gV~~l-~~~~l~L~eiapGv~~e~v~~~t~~~~~v~  206 (207)
T 3rrl_B          148 SKVKKECSLPLTGKGVVHQLITDLAVFEF-SNNAMKLVELQEGVSLDQVKEKTEAEFEVR  206 (207)
T ss_dssp             BSEESSCSSCCSBSSCCSEEECSSEEEEE-ETTEEEEEEECTTCCHHHHHHHCCSCCEEC
T ss_pred             ceECccccccCCCCCceEEEECCceEEEE-cCCeEEEEEeCCCCCHHHHHHhcCCceEee
Confidence            46899999999999999999999999999 455999999999999999999999999986

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3

Probab=99.68  E-value=4.8e-17  Score=122.24  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             CccCCCC----------------CCCCCCCCccEEEcCceEEEeccC-CcEEEEEecCCCCHHHHHHhhCCceeecCCCC
Q psy5915          20 DALPTKP----------------TRLGLTALSSDVLSRDCVFEVDKE-RGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLK   82 (89)
Q Consensus        20 ~~~~~Ct----------------lPLTg~~~V~~IITdlaVf~~d~~-~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~   82 (89)
                      +++++|+                +|||+.+.+++||||+|||+++++ ++|+|+|+|||+|+|||+++|||++.++++++
T Consensus       155 k~V~~v~~vt~~G~~~~~~~r~~~~~t~~r~~~~vVTe~gV~~~~~~~~~l~L~e~~Pgvt~edv~~~t~f~~~v~~~~~  234 (260)
T 1poi_B          155 RFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDVLENTGFDLDVSKAVE  234 (260)
T ss_dssp             TBCSSCSCCSBCCSTTSTTHHHHTTCCTTCCEEEEEETTEEEEECTTTCCEEEEEECTTCCHHHHHHTCSSCCCCTTCEE
T ss_pred             eecccCceeeccCcccccccccccccccCCCCCEEEeCceEEEecCCCCcEEEEEeCCCCCHHHHHHhcCCCeecCCCCC
Confidence            6999999                999988234999999999999665 48999999999999999999999999999888


Q ss_pred             CCCc
Q psy5915          83 PMGQ   86 (89)
Q Consensus        83 ~m~~   86 (89)
                       |+.
T Consensus       235 -~~~  237 (260)
T 1poi_B          235 -LEA  237 (260)
T ss_dssp             -CCC
T ss_pred             -CCC
Confidence             754

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=99.55  E-value=1.5e-15  Score=123.03  Aligned_cols=67  Identities=31%  Similarity=0.485  Sum_probs=61.6

Q ss_pred             cCccCCCC-CCCCCC-----CCccEEEcCceEEEeccCCcEEEEEecCCCCHHH-HHHhhCCceeecCCCCCCCc
Q psy5915          19 ADALPTKP-TRLGLT-----ALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPE-IIVSTGCDFAVSPDLKPMGQ   86 (89)
Q Consensus        19 ~~~~~~Ct-lPLTg~-----~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~ee-V~~~Tg~~l~va~~l~~m~~   86 (89)
                      +++|++|+ +|+||.     ++|++||||+|||++ .+++|.|+|+|||+|+|+ |+++|||++.+++++++|+.
T Consensus       441 ~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l-~~~gl~l~e~apgv~~e~dv~~~t~~~~~v~~~~~~~~~  514 (531)
T 2ahu_A          441 KKFIRELPEITFSGKIALERGLDVRYITERAVFTL-KEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDE  514 (531)
T ss_dssp             ESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEE-ETTEEEEEEECTTCCHHHHTGGGSSSCCEEEEEEEECCG
T ss_pred             ceECCCCccCCCCCcccccCCCcEEEECCCEEEEe-cCCCceeeeeCCCCCHHHHHHHhcCCCeeecCccccccH
Confidence            56999999 999998     899999999999999 445999999999999998 99999999999988887754

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=98.36  E-value=2.4e-08  Score=80.72  Aligned_cols=61  Identities=5%  Similarity=-0.046  Sum_probs=54.5

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCC-----CCHHHHHHhhCCceeecCCC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEG-----VEVPEIIVSTGCDFAVSPDL   81 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pG-----vt~eeV~~~Tg~~l~va~~l   81 (89)
                      ++||++|++|+|+.++|+.||||+|||+.  ..++.|.|.+++     .+.|++++++...+.+++++
T Consensus       418 skIV~~~~~v~t~~~~V~~iVTE~Gva~~--l~g~~l~Era~~l~iAh~~~e~L~~~a~~~~~~p~~~  483 (509)
T 1xr4_A          418 PCVVEKVLTTVTPGASVDVLVTDHGIAVN--PARQDLLDNLRAAGVALMTIEQLQQRAEQLTGKPQPI  483 (509)
T ss_dssp             ESBCSSCSSCSBCGGGCCEEEETTEEEEC--TTCHHHHHHHHHTTCCCBCHHHHHHHHHHHHCCCCCC
T ss_pred             CeEeeCCCCcccCcCeeCEEECCcEEEEc--CCCCCHHHHhhccCCCcCCHHHHHHHHHHhhCCCccC
Confidence            57999999999999999999999999994  348999999998     89999999998888777654

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=97.96  E-value=7.7e-07  Score=72.16  Aligned_cols=61  Identities=10%  Similarity=0.025  Sum_probs=51.6

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEE------ecCCCCHHHHHHhhCCceeecCCCC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIE------IAEGVEVPEIIVSTGCDFAVSPDLK   82 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~e------i~pGvt~eeV~~~Tg~~l~va~~l~   82 (89)
                      ++||++|++++|+.++|+.||||+|||+.  -.++.|.|      ++. .+.|++++++...+.+++++.
T Consensus       422 skiV~~~~~vtt~~~~V~~VVTE~Gva~~--l~g~~l~Era~~l~ia~-~~~~~L~~~a~~~~~~~~~~~  488 (519)
T 2hj0_A          422 PTFVDKVNTVITPGTSVDVVVTEVGIAIN--PNRPDLIEYFKDLKVPQ-LTIEELKEKAYAIVGNPQPIQ  488 (519)
T ss_dssp             ESBCSSCSSCSBCGGGCCEEECSSCEEEC--TTCHHHHHHTTTCSSCE-ECHHHHHHHHHHHHCSCCCCC
T ss_pred             CeeccCCCCcccCCCCCCEEECCCEEEEC--CCCCCHHHHHHHcCCCc-ccHHHHHHHHHHhhCCCcccC
Confidence            46999999999999999999999999993  23677777      666 899999999988888776653

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=97.31  E-value=1.3e-05  Score=64.56  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV   62 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv   62 (89)
                      ++||+.|+.++|+.++|+.||||+|||++ .  ++.+.|.++++
T Consensus       407 skIv~~~~~v~t~~~~v~~vVTE~gva~l-~--G~~~~era~~l  447 (497)
T 2g39_A          407 SSVVPMVSHVDHTEHDVDILVTEQGLADL-R--GLAPRERARVI  447 (497)
T ss_dssp             ESEESSCSSCSBCGGGCCEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred             CeEeeCCCCeecCCCceeEEECCCEEEEc-c--CCCHHHHHHHH
Confidence            46999999999999999999999999999 3  77777777766

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=97.16  E-value=2e-05  Score=62.06  Aligned_cols=41  Identities=20%  Similarity=0.136  Sum_probs=32.3

Q ss_pred             cCccCCC---CCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915          19 ADALPTK---PTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV   62 (89)
Q Consensus        19 ~~~~~~C---tlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv   62 (89)
                      .+||++|   +++.|..++|+.||||+|||++ .  ++.|.|.++++
T Consensus       367 s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l-~--g~~l~e~a~~l  410 (439)
T 3d3u_A          367 SRIVPILKEGACVTTGRNEVDYVVTEYGVARL-R--GATLRQRAEAL  410 (439)
T ss_dssp             ESEESSCC------CCSTTCSEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred             CeEeECccCCCCceeCCCcceEEECCCEEEEe-C--CCCHHHHHHHH
Confidence            4699999   6999999999999999999998 3  77788887776

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=97.16  E-value=3.7e-05  Score=61.53  Aligned_cols=59  Identities=17%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             cCccCCCCC---CCCCCCCccEEEcCceEEEeccCC-----cEEEEEecCCCCHHHHHHhhCCceeec
Q psy5915          19 ADALPTKPT---RLGLTALSSDVLSRDCVFEVDKER-----GLTLIEIAEGVEVPEIIVSTGCDFAVS   78 (89)
Q Consensus        19 ~~~~~~Ctl---PLTg~~~V~~IITdlaVf~~d~~~-----~l~L~ei~pGvt~eeV~~~Tg~~l~va   78 (89)
                      ++||+.|+.   ++|..++|+.||||+||+++ ...     ...|++++..-..+++++.+...+.++
T Consensus       371 s~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L-~G~~~~era~~li~iAhp~fr~~L~~~~~~~~~~~  437 (448)
T 3gk7_A          371 SKIVPFIDHGAAVTTSRNDADYVVTEYGIAEM-KGKSLQDRARALINIAHPDFKDELKAEFEKRFNAA  437 (448)
T ss_dssp             ESEESSCCTTCCCSBCTTTCCEEEETTEEEEC-TTCCHHHHHHHHHHTSCGGGHHHHHHHHHHHHSSC
T ss_pred             CeEeecCCCCCCceeCcCceEEEEeceEEEEc-cCCCHHHHHHHHHhcCCCcCHHHHHHHHHHhhccc
Confidence            569999999   99999999999999999999 421     255778999999999998887665554

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=97.07  E-value=4e-05  Score=61.88  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=36.1

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV   62 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv   62 (89)
                      ++||++|+.+.|..++|+.||||+|||++ .  ++.+.|.++++
T Consensus       403 s~iV~~~~~v~~~~~~v~~vVTE~Gva~L-~--G~~~~era~~i  443 (506)
T 2nvv_A          403 SSFVPMVAHHDHSEHSVKVIISEWGVADL-R--GKNPRERAHEI  443 (506)
T ss_dssp             ESEESSCSSCSBCTTTCCEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred             CeEEeCCCCcccCCCceeEEECCCEEEEc-c--CCCHHHHHHHH
Confidence            46999999999999999999999999999 3  67777777765

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=96.57  E-value=0.00077  Score=53.24  Aligned_cols=29  Identities=3%  Similarity=-0.083  Sum_probs=27.4

Q ss_pred             cCccCCC---CCCCCCCCCccEEEcCceEEEe
Q psy5915          19 ADALPTK---PTRLGLTALSSDVLSRDCVFEV   47 (89)
Q Consensus        19 ~~~~~~C---tlPLTg~~~V~~IITdlaVf~~   47 (89)
                      ++||++|   +.++|+.++|+.||||+||+++
T Consensus       361 skiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l  392 (436)
T 2oas_A          361 SRIASVLSPGAGVVTTRAHVHYIVTEYGAANL  392 (436)
T ss_dssp             ESEESSCCTTCCEEECTTTCCEEEETTEEEEC
T ss_pred             CEEeeccCCCCCcccCcccCCEEECCCEEEEC
Confidence            4699999   9999999999999999999988

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=96.49  E-value=0.0014  Score=52.61  Aligned_cols=29  Identities=3%  Similarity=0.008  Sum_probs=26.5

Q ss_pred             cCccCCCCCCC-CCCCCccEEEcCceEEEe
Q psy5915          19 ADALPTKPTRL-GLTALSSDVLSRDCVFEV   47 (89)
Q Consensus        19 ~~~~~~CtlPL-Tg~~~V~~IITdlaVf~~   47 (89)
                      .+||+.|++|+ |+.++|+.||||+||+++
T Consensus       392 s~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l  421 (455)
T 3qli_A          392 SRIIPRIDGPVTTPRIDTHYIVTEFGAVNL  421 (455)
T ss_dssp             ESEESCCSSSCSBCTTTCCEEEETTEEEEC
T ss_pred             CeEeccCCCCcccCcccccEEEeccEEEEC
Confidence            56999999886 699999999999999998

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=94.98  E-value=0.0091  Score=47.33  Aligned_cols=29  Identities=10%  Similarity=0.077  Sum_probs=27.3

Q ss_pred             cCccCCCCC---CCCCCCCccEEEcCceEEEe
Q psy5915          19 ADALPTKPT---RLGLTALSSDVLSRDCVFEV   47 (89)
Q Consensus        19 ~~~~~~Ctl---PLTg~~~V~~IITdlaVf~~   47 (89)
                      ++||++|+.   +.|..++|+.||||+|||++
T Consensus       370 s~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~L  401 (434)
T 3eh7_A          370 SRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQL  401 (434)
T ss_dssp             ESEESSCCTTCCEEECTTTCCEEEETTEEEEC
T ss_pred             CeEeeCCCCCCCceeCccceeEEEcccEEEEC
Confidence            569999999   99999999999999999997

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=85.62  E-value=0.44  Score=38.11  Aligned_cols=28  Identities=4%  Similarity=0.027  Sum_probs=26.5

Q ss_pred             CccCCCCCCCCCCCCccEEEcCceEEEe
Q psy5915          20 DALPTKPTRLGLTALSSDVLSRDCVFEV   47 (89)
Q Consensus        20 ~~~~~CtlPLTg~~~V~~IITdlaVf~~   47 (89)
                      +||+.|+..-|....|+.||||.||.++
T Consensus       414 ~ivp~~~~v~~~~~~v~~vVTE~Gva~L  441 (514)
T 4eu9_A          414 AIVPMAAHVDHIMQDAQIFVTEQGLADL  441 (514)
T ss_dssp             SEESSCSSCSBCGGGCCEEEETTEEEEC
T ss_pred             ccccCCCCccCCCCcCCEEEcCCEEEEe
Confidence            5899999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	89
d1ooya1	221	c.124.1.3 (A:261-481) Succinate:CoA transferase, C	8e-17
d1poib_	260	c.124.1.3 (B:) Glutaconate:CoA transferase beta {A	2e-09
d2ahua1	247	c.124.1.3 (A:283-529) Putative enzyme YdiF C-termi	3e-09

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 69.4 bits (169), Expect = 8e-17
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 170 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 221

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 5   RPGRESNPRPSAYKADALPTKPTRLGLTALS--SDVLSRDCVFEVDKERG-LTLIEIAEG 61
           R         ++      P    RLGL        V++   + + D++   + L      
Sbjct: 154 RRFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPT 213

Query: 62  VEVPEIIVSTGCDFAVSPDLK 82
               +++ +TG D  VS  ++
Sbjct: 214 SSPEDVLENTGFDLDVSKAVE 234

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEV-PEIIVSTGCDFAVSPDLKPM 84
            ++   VF + ++ GL LIEIA GV++  +I+        +SP+LK M
Sbjct: 184 YITERAVFTLKED-GLHLIEIAPGVDLQKDILDKMDFTPVISPELKLM 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1ooya1	221	Succinate:CoA transferase, C-terminal domain {Pig	99.8
d1poib_	260	Glutaconate:CoA transferase beta {Acidaminococcus	99.72
d2ahua1	247	Putative enzyme YdiF C-terminal domain {Escherichi	99.64
d1xr4a2	269	Putative citrate lyase alpha chain, citF2 {Salmone	92.21
d2g39a2	274	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	88.14

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.80  E-value=2.9e-20  Score=132.63  Aligned_cols=71  Identities=44%  Similarity=0.671  Sum_probs=66.9

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeecCCCCCCCcccC
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET   89 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m~~~~~   89 (89)
                      ++.+..|+.++++.++++.||||+|||+||++++|+|+|+|||+|+|||+++|||+|.+++++++|++++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~vVTe~gv~~~~~~~~l~L~~i~pgvt~eei~~~tgf~~~v~~~l~~m~~~~~  221 (221)
T d1ooya1         151 HKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT  221 (221)
T ss_dssp             BSEESSCSSCCSBSSCCCEEECSSEEEEEETTTEEEEEEECTTCCHHHHHHTCBSCCEEEEEEEECCCCCC
T ss_pred             cccceEecccccCcccceEEecccEEEEecCCCeEEEEEeCCCCCHHHHHHhcCCCeEECCCCcccCCCCC
Confidence            35778999999999999999999999999777789999999999999999999999999999999999875

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

Probab=99.72  E-value=1.8e-18  Score=127.99  Aligned_cols=64  Identities=14%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             ccCCCCCCCCCCCCccEEEcCceEEEeccCC-cEEEEEecCCCCHHHHHHhhCCceeecCCCCCC
Q psy5915          21 ALPTKPTRLGLTALSSDVLSRDCVFEVDKER-GLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPM   84 (89)
Q Consensus        21 ~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~-~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m   84 (89)
                      ...+|.+|||+.++|.+||||+|||+||.++ +|+|+|+|||+|+|||+++|||++.+++++.++
T Consensus       172 ~~~r~~~gl~~~~~~~~vVT~l~Vf~f~~~~~~l~L~ei~PGvt~edV~~~tgf~l~i~~~l~~~  236 (260)
T d1poib_         172 PGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDVLENTGFDLDVSKAVELE  236 (260)
T ss_dssp             TTHHHHTTCCTTCCEEEEEETTEEEEECTTTCCEEEEEECTTCCHHHHHHTCSSCCCCTTCEECC
T ss_pred             cccccccCccCCCCcceEEeccEEEEEeCCCCeEEEEEeCCCCCHHHHHHhcCCCeeeCCCCCCC
Confidence            5568889999999999999999999997665 799999999999999999999999999998644

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=3.7e-17  Score=119.93  Aligned_cols=65  Identities=31%  Similarity=0.504  Sum_probs=57.0

Q ss_pred             ccCCCCCCCCC-------CCCccEEEcCceEEEeccCCcEEEEEecCCCCHH-HHHHhhCCceeecCCCCCCCc
Q psy5915          21 ALPTKPTRLGL-------TALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVP-EIIVSTGCDFAVSPDLKPMGQ   86 (89)
Q Consensus        21 ~~~~CtlPLTg-------~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~e-eV~~~Tg~~l~va~~l~~m~~   86 (89)
                      .+..|..++|.       .+++..||||+|||+| ++++|+|+|+|||+|+| ||+++|||++.+++++++|+.
T Consensus       160 ~~~~~v~~it~~~~~~~~~g~~~~vITe~~Vf~~-~~~~l~L~ei~PGvt~e~dV~~~tgf~~~i~~~l~~m~~  232 (247)
T d2ahua1         160 KFIRELPEITFSGKIALERGLDVRYITERAVFTL-KEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDE  232 (247)
T ss_dssp             SEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEE-ETTEEEEEEECTTCCHHHHTGGGSSSCCEEEEEEEECCG
T ss_pred             cccccccccccccccccccCCceEEEcCcEEEEE-eCCeEEEEEeCCCCCHhHHHHHhcCCCeeeCCccccCCH
Confidence            34567778885       5688999999999999 56689999999999998 899999999999999998864

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.21  E-value=0.035  Score=39.81  Aligned_cols=28  Identities=7%  Similarity=-0.078  Sum_probs=25.7

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEE
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFE   46 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~   46 (89)
                      ++|+++|+.+.|...+|+.||||.|+.-
T Consensus       179 s~iv~~~t~~~t~~~~vdviVTE~G~av  206 (269)
T d1xr4a2         179 PCVVEKVLTTVTPGASVDVLVTDHGIAV  206 (269)
T ss_dssp             ESBCSSCSSCSBCGGGCCEEEETTEEEE
T ss_pred             CeEccCCccccCCCcceeEEEccCceEE
Confidence            5689999999999999999999999873

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.14  E-value=0.13  Score=36.98  Aligned_cols=29  Identities=3%  Similarity=-0.004  Sum_probs=26.1

Q ss_pred             cCccCCCCCCCCCCCCccEEEcCceEEEe
Q psy5915          19 ADALPTKPTRLGLTALSSDVLSRDCVFEV   47 (89)
Q Consensus        19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~   47 (89)
                      .+||+.|+.+.|....|+.||||.||.++
T Consensus       184 S~IVp~~t~vttpr~dVd~VVTEyGiA~L  212 (274)
T d2g39a2         184 SSVVPMVSHVDHTEHDVDILVTEQGLADL  212 (274)
T ss_dssp             ESEESSCSSCSBCGGGCCEEEETTEEEEC
T ss_pred             CcEeCCCCCccCCCceeeEEEeCceEEEe
Confidence            35899999888888899999999999998