Psyllid ID: psy5916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MDSNSGSYYSNETSQVPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDENCPEHLSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPVQQPDTPPPSTSDPSNVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdsnsgsyysnetsqvpgrrtplgnvglggfyfppsvsavsagppsdencpehlshnsrfqdpthsgamgslqplakknrqgktvrLNINARERRRMHDLNDALDELRAvipyahspsvrkLSKIATLLLAKNYILMQANALEELRRIITYIQaqgtmtmppgfdlqatmlpvqqpdtpppstsdpsnvs
Flexible Loop (DISEMBL)
mdsnsgsyysnetsqvpgrrTPLGNVGLGGFYFPPSVSAVSAGPPSDENCPEHLSHNSRFQDPTHSGAMGSlqplakknrqgktvrlninarerrrMHDLNDALDELRAVIPyahspsvrkLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPVQQpdtpppstsdpsnvs
Low Complexity Region (SEG)
MDSNSGSYYSNETSQVPGRRTPLGNVGLGGFYFppsvsavsagppsDENCPEHLSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLpvqqpdtpppstsdpsnvs
Disordered region (IsUnstruct)
***********************GNVGLGGFYF*******************************************************************NDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTM******************************
Disordered Region (DISOPRED)
***********************************************************************************************RMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE**********************************************
Disordered Region (DISEMBL)
****************PGRRTPLGNVGLGGFYFPPSVS***************LSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPVQ****************
Disordered Region (DISPRO)
****************PGRRTPLGNVG******************************************************GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPV*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSNSGSYYSNETSQVPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDENCPEHLSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNIxxxxxxxxxxxxxxxxxxxxxIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPVQQPDTPPPSTSDPSNVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q8NFJ8	381	Class E basic helix-loop-	yes	N/A	0.4	0.199	0.842	8e-33
Q0V9X5	296	Class E basic helix-loop-	yes	N/A	0.4	0.256	0.842	9e-33
Q71T09	311	Class E basic helix-loop-	yes	N/A	0.405	0.247	0.831	1e-32
Q8C6A8	355	Class E basic helix-loop-	yes	N/A	0.368	0.197	0.885	2e-31
O09029	365	Class E basic helix-loop-	N/A	N/A	0.368	0.191	0.885	2e-31
Q8BGW3	223	Class E basic helix-loop-	no	N/A	0.421	0.358	0.777	9e-31
Q8NDY6	225	Class E basic helix-loop-	no	N/A	0.421	0.355	0.753	2e-29
Q13516	323	Oligodendrocyte transcrip	no	N/A	0.368	0.216	0.685	3e-23
Q9EQW6	323	Oligodendrocyte transcrip	no	N/A	0.368	0.216	0.685	5e-23
Q90XB3	298	Oligodendrocyte transcrip	no	N/A	0.368	0.234	0.685	5e-23

>sp|Q8NFJ8|BHE22_HUMAN Class E basic helix-loop-helix protein 22 OS=Homo sapiens GN=BHLHE22 PE=2 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 72/76 (94%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 235 KKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 294

Query: 137 MQANALEELRRIITYI 152
           MQA ALEE+RR++ Y+
Sbjct: 295 MQAQALEEMRRLVAYL 310

Inhibits DNA binding of TCF3/E47 homodimers and TCF3 (E47)/NEUROD1 heterodimers and acts as a strong repressor of Neurod1 and Myod-responsive genes, probably by heterodimerization with class a basic helix-loop-helix factors. Despite the presence of an intact basic domain, does not bind to DNA.
Homo sapiens (taxid: 9606)

>sp|Q0V9X5|BHE22_XENTR Class E basic helix-loop-helix protein 22 OS=Xenopus tropicalis GN=bhlhe22 PE=2 SV=1

 Score =  139 bits (351), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 73/76 (96%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           KK+++ +T+RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 146 KKSKEQRTLRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 205

Query: 137 MQANALEELRRIITYI 152
           MQA ALEE+RR++ Y+
Sbjct: 206 MQAQALEEMRRLVAYL 221

May acts as a transcriptional repressor.

Xenopus tropicalis (taxid: 8364)

>sp|Q71T09|BHE22_CHICK Class E basic helix-loop-helix protein 22 OS=Gallus gallus GN=BHLHE22 PE=2 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 73/77 (94%)

Query: 76  AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
           +KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI
Sbjct: 163 SKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 222

Query: 136 LMQANALEELRRIITYI 152
           LMQA ALEE+RR++ Y+
Sbjct: 223 LMQAQALEEMRRLVAYL 239

May acts as a transcriptional repressor.

Gallus gallus (taxid: 9031)

>sp|Q8C6A8|BHE22_MOUSE Class E basic helix-loop-helix protein 22 OS=Mus musculus GN=Bhlhe22 PE=1 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 67/70 (95%)

Query: 83  KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
           K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA AL
Sbjct: 215 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 274

Query: 143 EELRRIITYI 152
           EE+RR++ Y+
Sbjct: 275 EEMRRLVAYL 284

Inhibits DNA binding of TCF3/E47 homodimers and TCF3 (E47)/NEUROD1 heterodimers and acts as a strong repressor of Neurod1 and Myod-responsive genes, probably by heterodimerization with class a basic helix-loop-helix factors. Despite the presence of an intact basic domain, does not bind to DNA (By similarity). In the brain, may function as an area-specific transcription factor that regulates the postmitotic acquisition of area identities and elucidate the genetic hierarchy between progenitors and postmitotic neurons driving neocortical arealization. May be required for the survival of a specific population of inhibitory neurons in the superficial laminae of the spinal chord dorsal horn that may regulate pruritis. Seems to play a crucial role in the retinogenesis, in the specification of amacrine and bipolar subtypes.

Mus musculus (taxid: 10090)

>sp|O09029|BHE22_MESAU Class E basic helix-loop-helix protein 22 OS=Mesocricetus auratus GN=BHLHE22 PE=2 SV=2

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 67/70 (95%)

Query: 83  KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
           K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA AL
Sbjct: 225 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 284

Query: 143 EELRRIITYI 152
           EE+RR++ Y+
Sbjct: 285 EEMRRLVAYL 294

Inhibits DNA binding of TCF3/E47 homodimers and TCF3 (E47)/NEUROD1 heterodimers and acts as a strong repressor of Neurod1 and Myod-responsive genes, probably by heterodimerization with class a basic helix-loop-helix factors. Despite the presence of an intact basic domain, does not bind to DNA.

Mesocricetus auratus (taxid: 10036)

>sp|Q8BGW3|BHE23_MOUSE Class E basic helix-loop-helix protein 23 OS=Mus musculus GN=Bhlhe23 PE=2 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 74/81 (91%), Gaps = 1/81 (1%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           ++ R+ +++RL+INARERRRMHDLNDALD LRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 91  RRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYIL 150

Query: 137 MQANALEELRRIITYI-QAQG 156
           MQA ALEE+RR++ Y+ Q QG
Sbjct: 151 MQAQALEEMRRLVAYLNQGQG 171

May function as transcriptional repressor. May modulate the expression of genes required for the differentiation and/or maintenance of pancreatic and neuronal cell types. May be important for rod bipolar cell maturation.

Mus musculus (taxid: 10090)

>sp|Q8NDY6|BHE23_HUMAN Class E basic helix-loop-helix protein 23 OS=Homo sapiens GN=BHLHE23 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 74/81 (91%), Gaps = 1/81 (1%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           ++ R+ +++RL+INARERRRMHDLNDALD LRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 93  RRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYIL 152

Query: 137 MQANALEELRRIITYI-QAQG 156
           MQA AL+E+RR++ ++ Q QG
Sbjct: 153 MQAQALDEMRRLVAFLNQGQG 173

May function as transcriptional repressor. May modulate the expression of genes required for the differentiation and/or maintenance of pancreatic and neuronal cell types. May be important for rod bipolar cell maturation.

Homo sapiens (taxid: 9606)

>sp|Q13516|OLIG2_HUMAN Oligodendrocyte transcription factor 2 OS=Homo sapiens GN=OLIG2 PE=1 SV=2

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 61/70 (87%)

Query: 83  KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
           + +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM  N+L
Sbjct: 107 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 166

Query: 143 EELRRIITYI 152
           EE++R+++ I
Sbjct: 167 EEMKRLVSEI 176

Required for oligodendrocyte and motor neuron specification in the spinal cord, as well as for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 to establish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and of NKX2-2-induced V3 interneuron development.

Homo sapiens (taxid: 9606)

>sp|Q9EQW6|OLIG2_MOUSE Oligodendrocyte transcription factor 2 OS=Mus musculus GN=Olig2 PE=1 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 61/70 (87%)

Query: 83  KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
           + +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM  N+L
Sbjct: 107 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 166

Query: 143 EELRRIITYI 152
           EE++R+++ I
Sbjct: 167 EEMKRLVSEI 176

Required for oligodendrocyte and motor neuron specification in the spinal cord, as well as for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 to establish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and of NKX2-2-induced V3 interneuron development.

Mus musculus (taxid: 10090)

>sp|Q90XB3|OLIG2_CHICK Oligodendrocyte transcription factor 2 OS=Gallus gallus GN=OLIG2 PE=2 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 61/70 (87%)

Query: 83  KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
           + +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM  N+L
Sbjct: 105 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 164

Query: 143 EELRRIITYI 152
           EE++R+++ I
Sbjct: 165 EEMKRLVSEI 174

Required for oligodendrocyte and motor neuron specification in the spinal cord.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
193664445	196	PREDICTED: class E basic helix-loop-heli	0.863	0.836	0.642	3e-58
91083927	263	PREDICTED: similar to Olig family CG5545	0.857	0.619	0.651	5e-53
242021169	289	Oligodendrocyte transcription factor, pu	0.863	0.567	0.626	3e-49
170029169	239	basic helix-loop-helix protein [Culex qu	0.810	0.644	0.619	6e-45
322786100	276	hypothetical protein SINV_05295 [Solenop	0.784	0.539	0.622	4e-44
307178936	273	Class B basic helix-loop-helix protein 5	0.784	0.545	0.622	5e-44
157130050	469	basic helix-loop-helix protein [Aedes ae	0.731	0.296	0.671	6e-44
307192831	285	Class B basic helix-loop-helix protein 5	0.784	0.522	0.622	6e-44
118791884	250	AGAP009227-PA [Anopheles gambiae str. PE	0.805	0.612	0.563	1e-42
350404674	276	PREDICTED: hypothetical protein LOC10074	0.789	0.543	0.609	6e-42

>gi|193664445|ref|XP_001950802.1| PREDICTED: class E basic helix-loop-helix protein 22-like [Acyrthosiphon pisum]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 143/193 (74%), Gaps = 29/193 (15%)

Query: 6   GSYYSNETSQVPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDENCP----EHLSHNSRFQ 61
           G+Y++ E++QVPGRRTPL  VGLGG+YFP   S  S     DEN P    +  ++ S  +
Sbjct: 12  GTYFACESNQVPGRRTPLSAVGLGGYYFPQPSSVAS-----DENSPGPACQQFNNGSDNR 66

Query: 62  DP-------THSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYA 114
            P       T SGA G       K++QGK+VRLNINARERRRMHDLNDALDELR+VIPYA
Sbjct: 67  IPNNGQGTSTMSGAGGK-----SKSKQGKSVRLNINARERRRMHDLNDALDELRSVIPYA 121

Query: 115 HSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPPGFDLQATMLPVQ 174
           HSPSVRKLSKIATLLLAKNYILMQANALEELRR+ITYIQAQGTMTMPPGFDLQA+M P++
Sbjct: 122 HSPSVRKLSKIATLLLAKNYILMQANALEELRRLITYIQAQGTMTMPPGFDLQASMYPIK 181

Query: 175 --------QPDTP 179
                    PD+P
Sbjct: 182 PSLASPNASPDSP 194

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083927|ref|XP_974793.1| PREDICTED: similar to Olig family CG5545-PA [Tribolium castaneum] gi|270007964|gb|EFA04412.1| hypothetical protein TcasGA2_TC014712 [Tribolium castaneum]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 112/172 (65%), Positives = 130/172 (75%), Gaps = 9/172 (5%)

Query: 3   SNSGSYYSNETSQVPGRRTPLGNVGLGGFYFP---PSVSAVSAGPPSDENCPEHLSHNSR 59
           +N   + S E  Q+PGRRTPLG VGLGGFYF    P+++  S GPPSDEN P+  + +++
Sbjct: 62  TNFAPFTSTEEGQIPGRRTPLGAVGLGGFYFQGCQPNIA--SHGPPSDENTPDP-TDSTQ 118

Query: 60  FQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSV 119
              P HS A  +  P   KNRQGK+VRLNINARERRRMHDLNDALDELRAVIPYAHSPSV
Sbjct: 119 PNRPQHSRASQNANPSKAKNRQGKSVRLNINARERRRMHDLNDALDELRAVIPYAHSPSV 178

Query: 120 RKLSKIATLLLAKNYILMQANALEELRRIITYIQAQ---GTMTMPPGFDLQA 168
           RKLSKIATLLLAKNYILMQANALEE++R+I Y+Q       +  PPGFDLQ 
Sbjct: 179 RKLSKIATLLLAKNYILMQANALEEMKRLIAYLQGTAGGAAIVAPPGFDLQG 230

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021169|ref|XP_002431018.1| Oligodendrocyte transcription factor, putative [Pediculus humanus corporis] gi|212516247|gb|EEB18280.1| Oligodendrocyte transcription factor, putative [Pediculus humanus corporis]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 127/182 (69%), Gaps = 18/182 (9%)

Query: 14  SQVPGRRTPLGNVGLGGFYFPPSV--SAVSAGPPSDENCPEHLSHNS------RFQDPTH 65
           +Q+PGRRTPLG VGLGGFYFPPS+     S   P DEN PE    NS      R Q  + 
Sbjct: 92  NQIPGRRTPLGAVGLGGFYFPPSLLQQQASCSGPRDENSPEPNVSNSNIPSTNRVQT-SR 150

Query: 66  SGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 125
           +   G++     K+RQGK VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSKI
Sbjct: 151 NNTTGNVS--KGKSRQGKLVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKI 208

Query: 126 ATLLLAKNYILMQANALEELRRIITYIQAQGTMTMP-----PG--FDLQATMLPVQQPDT 178
           ATLLLAKNYILMQANALEE+RRII Y+Q QG + MP     PG  FD Q     + Q   
Sbjct: 209 ATLLLAKNYILMQANALEEMRRIIAYMQTQGAVAMPGMQTSPGAAFDPQTFTNNIPQKIQ 268

Query: 179 PP 180
           PP
Sbjct: 269 PP 270

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029169|ref|XP_001842466.1| basic helix-loop-helix protein [Culex quinquefasciatus] gi|167880673|gb|EDS44056.1| basic helix-loop-helix protein [Culex quinquefasciatus]

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 113/163 (69%), Gaps = 9/163 (5%)

Query: 16  VPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDENCPEHLSHNSRFQDPTHSGAMGSLQPL 75
           VPGRRTPLG VGLGGFY  P  +  ++   +DEN P   S  S F  P H          
Sbjct: 33  VPGRRTPLGTVGLGGFYSQPHAAGSTSAALTDENRPSG-SAESHFSPPVHHPVAPVPTGG 91

Query: 76  AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
            +KNRQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSKIATLLLAKNYI
Sbjct: 92  KQKNRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLLAKNYI 151

Query: 136 LMQANALEELRRIITYIQAQGTM--------TMPPGFDLQATM 170
           LMQANAL+ELRR++ YIQ+            TMP    LQ  +
Sbjct: 152 LMQANALDELRRLLAYIQSAAGAGAPTVDLRTMPSAIKLQQLL 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786100|gb|EFZ12709.1| hypothetical protein SINV_05295 [Solenopsis invicta]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 115/167 (68%), Gaps = 18/167 (10%)

Query: 7   SYYSNETSQVPGRRTPLGNVGLGGFYFP--PSVSAVSAGPPSDENCPEHLSHNSRFQDPT 64
           +Y S  T   PGRRTPLG VGLGGFYF   P   A S+   SDEN P+     SR   P 
Sbjct: 77  AYSSEHTQSAPGRRTPLGAVGLGGFYFQQQPQPHASSSAL-SDENRPDERPTGSRLNCP- 134

Query: 65  HSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSK 124
                    P +K  RQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSK
Sbjct: 135 ---------PKSKTTRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSK 185

Query: 125 IATLLLAKNYILMQANALEELRRIITYIQA--QGTMTMPP---GFDL 166
           IATLLLAKNYILMQ NALEELRR+I  +Q+    T  +PP    +DL
Sbjct: 186 IATLLLAKNYILMQGNALEELRRVIAVLQSPHAHTTALPPTPVSYDL 232

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178936|gb|EFN67458.1| Class B basic helix-loop-helix protein 5 [Camponotus floridanus]

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 115/167 (68%), Gaps = 18/167 (10%)

Query: 7   SYYSNETSQVPGRRTPLGNVGLGGFYFP--PSVSAVSAGPPSDENCPEHLSHNSRFQDPT 64
           +Y S  T   PGRRTPLG VGLGGFYF   P   A S+   SDEN P+     SR   P 
Sbjct: 77  AYSSEHTQSAPGRRTPLGAVGLGGFYFQQQPQPHASSSAL-SDENRPDERPTGSRLNCP- 134

Query: 65  HSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSK 124
                    P +K  RQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSK
Sbjct: 135 ---------PKSKTTRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSK 185

Query: 125 IATLLLAKNYILMQANALEELRRIITYIQA--QGTMTMPP---GFDL 166
           IATLLLAKNYILMQ NALEELRR+I  +Q+    T  +PP    +DL
Sbjct: 186 IATLLLAKNYILMQGNALEELRRVIAVLQSPHAHTTALPPTPVSYDL 232

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130050|ref|XP_001655535.1| basic helix-loop-helix protein [Aedes aegypti] gi|108884418|gb|EAT48643.1| AAEL000341-PA [Aedes aegypti]

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 111/146 (76%), Gaps = 7/146 (4%)

Query: 16  VPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDENCPEHLSHNSRFQDPTHSGAMGSLQPL 75
           VPGRRTPLG VGLGGFY  P  SA ++   +DEN P   + ++       SGA G     
Sbjct: 268 VPGRRTPLGTVGLGGFYAQPHASASASL--TDENRPSGSAESAAPHHQPPSGAGGK---- 321

Query: 76  AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
            +KNRQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSKIATLLLAKNYI
Sbjct: 322 -QKNRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLLAKNYI 380

Query: 136 LMQANALEELRRIITYIQAQGTMTMP 161
           LMQANAL+ELRR++ YIQ+      P
Sbjct: 381 LMQANALDELRRLLAYIQSAAGAGAP 406

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192831|gb|EFN75891.1| Class B basic helix-loop-helix protein 5 [Harpegnathos saltator]

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 115/167 (68%), Gaps = 18/167 (10%)

Query: 7   SYYSNETSQVPGRRTPLGNVGLGGFYFP--PSVSAVSAGPPSDENCPEHLSHNSRFQDPT 64
           +Y S  T   PGRRTPLG VGLGGFYF   P   A S+   SDEN P+     SR   P 
Sbjct: 87  AYSSEHTQSAPGRRTPLGAVGLGGFYFQQQPQPHASSSAL-SDENRPDERPGASRLNCP- 144

Query: 65  HSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSK 124
                    P +K  RQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSK
Sbjct: 145 ---------PKSKTTRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSK 195

Query: 125 IATLLLAKNYILMQANALEELRRIITYIQA--QGTMTMPP---GFDL 166
           IATLLLAKNYILMQ NALEELRR+I  +Q+    T  +PP    +DL
Sbjct: 196 IATLLLAKNYILMQGNALEELRRVIAVLQSPHAHTTALPPTPVSYDL 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118791884|ref|XP_553165.2| AGAP009227-PA [Anopheles gambiae str. PEST] gi|116117813|gb|EAL39075.2| AGAP009227-PA [Anopheles gambiae str. PEST]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 118/188 (62%), Gaps = 35/188 (18%)

Query: 16  VPGRRTPLGNVGLGGFYFPPSVSAVSAGPPSDEN-------------CPEHLSHNSRFQD 62
           VPGRRTPLG VGLGGFY  P  S+ +    +DEN             C    S       
Sbjct: 41  VPGRRTPLGTVGLGGFYAQPHASSATH---TDENRPSGSAERKQANKCLISTSPPPHHHV 97

Query: 63  PTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKL 122
           P   GA G      +KNRQGK+VRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKL
Sbjct: 98  PVPPGAAGK-----QKNRQGKSVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKL 152

Query: 123 SKIATLLLAKNYILMQANALEELRRIITYIQAQGTM--------TMPPGFDLQATM---- 170
           SKIATLLLAKNYILMQANAL+ELRR++ YIQ+            TMP    LQ  +    
Sbjct: 153 SKIATLLLAKNYILMQANALDELRRLLAYIQSAAGASIPTVDLRTMPSALKLQQLLQAPH 212

Query: 171 --LPVQQP 176
             L +QQP
Sbjct: 213 QDLALQQP 220

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404674|ref|XP_003487181.1| PREDICTED: hypothetical protein LOC100743779 isoform 1 [Bombus impatiens] gi|350404676|ref|XP_003487182.1| PREDICTED: hypothetical protein LOC100743779 isoform 2 [Bombus impatiens]

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 114/169 (67%), Gaps = 19/169 (11%)

Query: 6   GSYYSNETSQVPGRRTPLGNVGLGGFYFP--PSVSAVSAGPPSDENCPEHLSHN-SRFQD 62
            SY S      PGRRTPLG VGLGGFYF   P   A S+   SDEN P+      SR   
Sbjct: 76  ASYSSEHPQSAPGRRTPLGAVGLGGFYFQQQPQPHASSSAL-SDENRPDQERPGASRLNC 134

Query: 63  PTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKL 122
           P          P +K  RQGK++RLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKL
Sbjct: 135 P----------PKSKTTRQGKSMRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKL 184

Query: 123 SKIATLLLAKNYILMQANALEELRRIITYIQA--QGTMTMPP---GFDL 166
           SKIATLLLAKNYILMQ NALEELRR+I  +Q+    T  +PP    +DL
Sbjct: 185 SKIATLLLAKNYILMQGNALEELRRVIAVLQSPHAHTTALPPTPVSYDL 233

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0032651	232	Oli "Olig family" [Drosophila	0.463	0.379	0.853	3.2e-41
UNIPROTKB|F1RTA8	369	BHLHE22 "Uncharacterized prote	0.473	0.243	0.758	8.8e-31
ZFIN|ZDB-GENE-040426-1411	261	bhlhe22 "basic helix-loop-heli	0.542	0.394	0.672	8.8e-31
UNIPROTKB|Q8NFJ8	381	BHLHE22 "Class E basic helix-l	0.468	0.233	0.755	1.4e-30
MGI|MGI:1930001	355	Bhlhe22 "basic helix-loop-heli	0.568	0.304	0.663	1.4e-30
UNIPROTKB|E1BEW2	330	LOC525275 "Uncharacterized pro	0.473	0.272	0.758	2.3e-30
RGD|1305451	352	Bhlhe22 "basic helix-loop-heli	0.563	0.303	0.672	2.3e-30
UNIPROTKB|Q71T09	311	BHLHE22 "Class E basic helix-l	0.421	0.257	0.814	4.9e-30
ZFIN|ZDB-GENE-050913-22	227	bhlhe23 "basic helix-loop-heli	0.547	0.458	0.618	7.9e-30
UNIPROTKB|Q71T10	220	BHLHE23 "BHLH transcription fa	0.484	0.418	0.697	1.5e-28

FB|FBgn0032651 Oli "Olig family" [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 76/89 (85%), Positives = 80/89 (89%)

Query:    67 GAMGSLQPLAK-KNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 125
             GA GS     K KNRQGKTVRLNINARERRRMHDLNDALDELR+VIPYAHSPSVRKLSKI
Sbjct:   110 GASGSGSNSGKQKNRQGKTVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKI 169

Query:   126 ATLLLAKNYILMQANALEELRRIITYIQA 154
             ATLLLAKNYILMQ NALEELRR++ YIQ+
Sbjct:   170 ATLLLAKNYILMQQNALEELRRLLAYIQS 198

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F1RTA8 BHLHE22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/91 (75%), Positives = 78/91 (85%)

Query:    66 SGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 125
             SG  G     +KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI
Sbjct:   212 SGGSGGSGGSSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 271

Query:   126 ATLLLAKNYILMQANALEELRRIITYIQAQG 156
             ATLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   272 ATLLLAKNYILMQAQALEEMRRLVAYLN-QG 301

GO:0060040 "retinal bipolar neuron differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0021960 "anterior commissure morphogenesis" evidence=IEA

GO:0021957 "corticospinal tract morphogenesis" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1411 bhlhe22 "basic helix-loop-helix family, member e22" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 74/110 (67%), Positives = 83/110 (75%)

Query:    47 DENCPEHLSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDE 106
             DE C   L  + R   P      G+     KKN++ K +RLNINARERRRMHDLNDALDE
Sbjct:    99 DERCEMMLMTDGRTTVP------GAKSEGGKKNKEQKMLRLNINARERRRMHDLNDALDE 152

Query:   107 LRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQG 156
             LRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   153 LRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLN-QG 201

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q8NFJ8 BHLHE22 "Class E basic helix-loop-helix protein 22" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/90 (75%), Positives = 78/90 (86%)

Query:    67 GAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIA 126
             G+  S    +KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIA
Sbjct:   225 GSSSSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIA 284

Query:   127 TLLLAKNYILMQANALEELRRIITYIQAQG 156
             TLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   285 TLLLAKNYILMQAQALEEMRRLVAYLN-QG 313

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IEA

GO:0021957 "corticospinal tract morphogenesis" evidence=IEA

GO:0021960 "anterior commissure morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0060040 "retinal bipolar neuron differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1930001 Bhlhe22 "basic helix-loop-helix family, member e22" [Mus musculus (taxid:10090)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 75/113 (66%), Positives = 84/113 (74%)

Query:    48 ENCPE-HLSHNSRFQD--PTHSGAMGSLQP-LAKKNRQGKTVRLNINARERRRMHDLNDA 103
             E C   HL   S      PT  G  G      +KK+++ K +RLNINARERRRMHDLNDA
Sbjct:   176 EGCSNAHLHGGSGLPPGGPTSGGGSGGGGGGSSKKSKEQKALRLNINARERRRMHDLNDA 235

Query:   104 LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQG 156
             LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   236 LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLN-QG 287

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IMP

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IMP

GO:0021957 "corticospinal tract morphogenesis" evidence=IGI;IMP

GO:0021960 "anterior commissure morphogenesis" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0060040 "retinal bipolar neuron differentiation" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

UNIPROTKB|E1BEW2 LOC525275 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/91 (75%), Positives = 78/91 (85%)

Query:    66 SGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 125
             SG  G     +KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI
Sbjct:   204 SGGGGGGSGGSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKI 263

Query:   126 ATLLLAKNYILMQANALEELRRIITYIQAQG 156
             ATLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   264 ATLLLAKNYILMQAQALEEMRRLVAYLN-QG 293

GO:0060040 "retinal bipolar neuron differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0021960 "anterior commissure morphogenesis" evidence=IEA

GO:0021957 "corticospinal tract morphogenesis" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

RGD|1305451 Bhlhe22 "basic helix-loop-helix family, member e22" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 76/113 (67%), Positives = 85/113 (75%)

Query:    48 ENCPE-HLSHNSRFQD--PTH-SGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDA 103
             E C   HL   S      PT  SG  G     +KK+++ K +RLNINARERRRMHDLNDA
Sbjct:   174 EGCSNAHLHGGSGLPPGGPTSGSGGNGG-GGSSKKSKEQKALRLNINARERRRMHDLNDA 232

Query:   104 LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQG 156
             LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA ALEE+RR++ Y+  QG
Sbjct:   233 LDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLN-QG 284

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0021540 "corpus callosum morphogenesis" evidence=IEA;ISO

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=ISO

GO:0021957 "corticospinal tract morphogenesis" evidence=IEA;ISO

GO:0021960 "anterior commissure morphogenesis" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0060040 "retinal bipolar neuron differentiation" evidence=IEA;ISO

GO:0060042 "retina morphogenesis in camera-type eye" evidence=ISO

UNIPROTKB|Q71T09 BHLHE22 "Class E basic helix-loop-helix protein 22" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 66/81 (81%), Positives = 75/81 (92%)

Query:    76 AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
             +KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI
Sbjct:   163 SKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 222

Query:   136 LMQANALEELRRIITYIQAQG 156
             LMQA ALEE+RR++ Y+  QG
Sbjct:   223 LMQAQALEEMRRLVAYLN-QG 242

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-050913-22 bhlhe23 "basic helix-loop-helix family, member e23" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 68/110 (61%), Positives = 84/110 (76%)

Query:    52 EHLSHNSRFQDPTHSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVI 111
             E     + F +  H G+      L KK+++ +++RL+INARERRRMHDLNDALD LR+VI
Sbjct:    78 ESRKRGAGFDEEKHPGS------LTKKSKEQRSLRLSINARERRRMHDLNDALDGLRSVI 131

Query:   112 PYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMP 161
             PYAHSPSVRKLSKIATLLLAKNYILMQA ALEE+RR++ Y+    T+T P
Sbjct:   132 PYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLNQGQTITSP 181

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q71T10 BHLHE23 "BHLH transcription factor neuroAB" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/96 (69%), Positives = 79/96 (82%)

Query:    75 LAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNY 134
             L KK ++ +++RL+INARERRRMHDLNDALD LR+VIPYAHSPSVRKLSKIATLLLAKNY
Sbjct:    88 LGKKPKEQRSLRLSINARERRRMHDLNDALDGLRSVIPYAHSPSVRKLSKIATLLLAKNY 147

Query:   135 ILMQANALEELRRIITYIQAQGTMTMPPGFDLQATM 170
             ILMQA ALEE+RR++ Y+  QG     P   L AT+
Sbjct:   148 ILMQAQALEEMRRLVAYLN-QGQALSAP---LPATL 179

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046671 "negative regulation of retinal cell programmed cell death" evidence=IEA

GO:0048050 "post-embryonic eye morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q71T09	BHE22_CHICK	No assigned EC number	0.8311	0.4052	0.2475	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	3e-16
smart00353	53	smart00353, HLH, helix loop helix domain	3e-16
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-15

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 69.0 bits (170), Expect = 3e-16
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILM 137
           R   N RERRR   +NDA +ELR ++P   +   +KLSK   L LA  YI  
Sbjct: 2   RKAHNERERRRRDRINDAFEELRELLPTPPN---KKLSKAEILRLAIEYIKH 50

Length = 52

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 68.8 bits (169), Expect = 3e-16
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 90  NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE 144
           NARERRR   +N+A DELR+++P    P  +KLSK   L LA  YI      L++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTL--PKNKKLSKAEILRLAIEYIKSLQEELQK 53

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 67.6 bits (166), Expect = 1e-15
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
           R   N RERRR   +NDA DELR+++P    P  +KLSK   L  A +YI      L+
Sbjct: 5   REAHNLRERRRRERINDAFDELRSLLPT--LPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG4029|consensus	228		99.72
KOG3960|consensus	284		99.68
KOG3898|consensus	254		99.68
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.47
KOG4395|consensus	285		99.46
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.35
smart00353	53	HLH helix loop helix domain.	99.29
KOG3910|consensus	632		99.29
KOG0561|consensus	373		99.21
KOG4447|consensus	173		99.19
KOG1319|consensus	229		98.37
KOG1318|consensus	411		97.99
KOG2483|consensus	232		97.63
KOG4447|consensus	173		96.54
KOG2588|consensus	953		96.19
PLN03217	93	transcription factor ATBS1; Provisional	96.12
KOG4304|consensus	250		96.08
KOG3561|consensus	803		95.73
KOG3558|consensus	768		87.46

>KOG4029|consensus

Probab=99.72  E-value=3.5e-18  Score=145.04  Aligned_cols=68  Identities=41%  Similarity=0.574  Sum_probs=61.2

Q ss_pred             cccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPS-VRKLSKIATLLLAKNYILMQANALEELR  146 (190)
Q Consensus        77 ~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~-~kKLSKietLr~Ai~YI~~L~~~L~e~~  146 (190)
                      .+......+|.++|+|||.||++||.||++||.+||..  +. ++|||||+|||+||.||.+|.++|+...
T Consensus       101 ~~~~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~--~~~~kklSKveTLr~A~~YI~~L~~lL~~~~  169 (228)
T KOG4029|consen  101 SKSSQTSAQRQARNARERQRVQSVNSAFAELRALLPTE--PPQSKKLSKVETLRLATSYIRYLTKLLATQE  169 (228)
T ss_pred             ccccchhhhhhhhhhhhhhcccchhhhhHHHHhcCCCC--CCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence            44455677899999999999999999999999999996  46 9999999999999999999999997655

>KOG3960|consensus

Probab=99.68  E-value=1.6e-16  Score=138.98  Aligned_cols=69  Identities=26%  Similarity=0.353  Sum_probs=61.4

Q ss_pred             cccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRI  148 (190)
Q Consensus        77 ~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~  148 (190)
                      ||+...-+||.+|.+|||+|++.||+|||.|+++.=.+   ++++|.||||||.||.||+.|+.+|.+....
T Consensus       110 krks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~N---PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  110 KRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSN---PNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---ccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35556778999999999999999999999999998665   7899999999999999999999999876543

>KOG3898|consensus

Probab=99.68  E-value=4.5e-17  Score=141.73  Aligned_cols=64  Identities=55%  Similarity=0.603  Sum_probs=58.2

Q ss_pred             cchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          81 QGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELR  146 (190)
Q Consensus        81 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~  146 (190)
                      ..+.+|.++|+|||+|||+||+|||.||.+||..  +.+.||+|||||++|-+||..|+.++....
T Consensus        68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~--~~~~klskIetl~~a~~yi~als~~~ls~~  131 (254)
T KOG3898|consen   68 ALTLRRLKANARERTRMHDLNDALDALREVIPHG--LHPPKLSKIETLRLAANYIAALSEVLLSGI  131 (254)
T ss_pred             hhhhhcccccchhhccccchhHHHHHhHhhccCc--CCCCCCCcchhHHhhhcchhhhccccccCC
Confidence            4678999999999999999999999999999974  689999999999999999999998875443

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.47  E-value=1.4e-13  Score=92.90  Aligned_cols=55  Identities=44%  Similarity=0.565  Sum_probs=49.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA  139 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~  139 (190)
                      +|...|.+||.|...||++|+.|+..||........|++|++||..||+||.+|+
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            5788999999999999999999999999841236788999999999999999885

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG4395|consensus

Probab=99.46  E-value=2.2e-13  Score=119.51  Aligned_cols=62  Identities=48%  Similarity=0.618  Sum_probs=57.1

Q ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL  145 (190)
Q Consensus        82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~  145 (190)
                      .+.+|.++|+|||+||+.||.|||.||.+||..  -.++||||.|||++|..||..|..+|+..
T Consensus       171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~--~~d~~LSkyetLqmaq~yi~~l~~~l~~~  232 (285)
T KOG4395|consen  171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDG--DSDKKLSKYETLQMAQGYILALGCLLDLP  232 (285)
T ss_pred             HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCC--CccchhhhhhHHHHHHHHHhhhHHhhcCc
Confidence            456899999999999999999999999999986  38999999999999999999999999543

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.35  E-value=3.8e-12  Score=85.86  Aligned_cols=57  Identities=42%  Similarity=0.528  Sum_probs=51.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL  142 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L  142 (190)
                      .+|...|.+||.|...||.+|+.|+..||...  ...|++|+.||..|++||..|+..+
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~--~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLP--PSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999862  5899999999999999999998754

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.29  E-value=1.1e-11  Score=82.26  Aligned_cols=52  Identities=46%  Similarity=0.645  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5916          90 NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE  143 (190)
Q Consensus        90 N~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~  143 (190)
                      |++||.|...||++|+.|+..||...  ...|++|+.||..|++||..|+..++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~--~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLP--NNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999752  58999999999999999999987654

>KOG3910|consensus

Probab=99.29  E-value=3.8e-12  Score=120.08  Aligned_cols=79  Identities=29%  Similarity=0.321  Sum_probs=68.2

Q ss_pred             CCCCCCCCCccccccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5916          65 HSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE  144 (190)
Q Consensus        65 ~s~~~~~~~~~~~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e  144 (190)
                      ++...+..-....|..+.|+||++.|+|||.||++||+||++|-+.+-. |...+|..+|+-||.+|+..|..|++.+.|
T Consensus       506 sS~dedddl~peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCql-HlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  506 SSSDEDDDLNPEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQL-HLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             CCcccccccChhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHH-hhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            3344445556667888999999999999999999999999999999865 445899999999999999999999998866

>KOG0561|consensus

Probab=99.21  E-value=2.2e-11  Score=109.44  Aligned_cols=70  Identities=33%  Similarity=0.415  Sum_probs=60.0

Q ss_pred             cchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy5916          81 QGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL-------EELRRIITYIQ  153 (190)
Q Consensus        81 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L-------~e~~~~~~~~q  153 (190)
                      +++.||..||-.||+||+.||.+|..||.+||.-   .+.||||..||+...+||..|+..-       .|+++++.+..
T Consensus        56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~---eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~~  132 (373)
T KOG0561|consen   56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRK---EGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEED  132 (373)
T ss_pred             HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc---cchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhhc
Confidence            3457899999999999999999999999999985   7999999999999999999887642       45666666553

>KOG4447|consensus

Probab=99.19  E-value=7.3e-12  Score=103.26  Aligned_cols=72  Identities=36%  Similarity=0.439  Sum_probs=60.9

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPP  162 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~~~~~~~p~  162 (190)
                      .+|.-||.|||+|-++||+||..||+.||+.   +..|||||.||++|..||.+|.++|...    -+++.....+++|
T Consensus        77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptl---PsdklSkiqtLklA~ryidfl~~vl~s~----l~~~~~~~sc~yP  148 (173)
T KOG4447|consen   77 KQRVMANVRERQRTQSLNEAFAALRKIIPTL---PSDKLSKIQTLKLAARYIDFLYQVLQSD----LELDPKMQSCSYP  148 (173)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCC---CccccccccchhhcccCCchhhhccccc----cccccccCCCCCC
Confidence            3799999999999999999999999999997   6689999999999999999999999765    2334444444443

>KOG1319|consensus

Probab=98.37  E-value=2e-06  Score=73.60  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=52.6

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPS---VRKLSKIATLLLAKNYILMQANALEELRRIITY  151 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~---~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~  151 (190)
                      ||.+...-||+|...||.+|+.|+.+||.-. +.   ..||||.-||..+|+||.+|..-......++..
T Consensus        62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq-~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~  130 (229)
T KOG1319|consen   62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQ-QQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST  130 (229)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555677799999999999999999999742 33   369999999999999999998766444444443

>KOG1318|consensus

Probab=97.99  E-value=4.7e-05  Score=71.13  Aligned_cols=64  Identities=33%  Similarity=0.384  Sum_probs=55.4

Q ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELR  146 (190)
Q Consensus        82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~  146 (190)
                      .+.+|..+|+=||+|--+||+...+|...||.... .+-|+.|--||..+++||.-|++.++.++
T Consensus       230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~-~~~~~nKgtILk~s~dYIr~Lqq~~q~~~  293 (411)
T KOG1318|consen  230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNS-EDMKSNKGTILKASCDYIRELQQTLQRAR  293 (411)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCc-chhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence            34466679999999999999999999999998654 67888999999999999999998876443

>KOG2483|consensus

Probab=97.63  E-value=0.0005  Score=60.03  Aligned_cols=58  Identities=24%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q psy5916          82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLS-KIATLLLAKNYILMQANAL  142 (190)
Q Consensus        82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLS-KietLr~Ai~YI~~L~~~L  142 (190)
                      ....|...|+=||+|-..|-+.|+.|+..||..   .+.+-+ -+.+|+.|..||..|+...
T Consensus        56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~---~~~~~~t~lsiL~kA~~~i~~l~~~~  114 (232)
T KOG2483|consen   56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLL---NGETRSTTLSILDKALEHIQSLERKS  114 (232)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCC---CCcchhhhhHhhhhHHHHHHHHHhHH
Confidence            455789999999999999999999999999997   455555 7999999999999887665

>KOG4447|consensus

Probab=96.54  E-value=0.0011  Score=55.19  Aligned_cols=56  Identities=21%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             hHHhhhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINAR-ERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL  142 (190)
Q Consensus        84 ~rR~~aN~R-ER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L  142 (190)
                      ..+.-+|.| ||.|-+.+|+||..|+..+|..   ...+.+|+.||+.+-.||..|.++-
T Consensus        20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgs---pa~gk~~~ktlr~~~~~~~~~dE~q   76 (173)
T KOG4447|consen   20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGS---PADGKRGKKTLRIGTDSIQSLDELQ   76 (173)
T ss_pred             hhhhhhhhHHHHhHHhhhhhhhhhccccCCCC---CCcccccccccccCCCchhhHHHHH
Confidence            345556666 9999999999999999999986   5577899999999999999887654

>KOG2588|consensus

Probab=96.19  E-value=0.0082  Score=61.18  Aligned_cols=58  Identities=29%  Similarity=0.290  Sum_probs=52.1

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE  144 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e  144 (190)
                      +.+|.+.|.=|++=--+||+-..+||+.||.    ..-||.|-++||.||+||..|+.....
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g----~~aKl~kSavLr~ai~~i~dl~~~nq~  331 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPG----TEAKLNKSAVLRKAIDYIEDLQGYNQK  331 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCc----cHhhhhhhhhHHHHHHHHHHhhccccc
Confidence            3789999999999999999999999999997    568999999999999999988766533

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.12  E-value=0.022  Score=43.51  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          97 MHDLNDALDELRAVIPYAHS-PSVRKLSKIATLLLAKNYILMQANALEELRRIITYI  152 (190)
Q Consensus        97 m~~lN~AF~~LR~~lP~~~~-p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~  152 (190)
                      -.+||+-..+|+..||.... -...|.|-.++|+.+++||..|...++++-.-+.++
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L   75 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL   75 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999998642 245688889999999999999999888876655554

>KOG4304|consensus

Probab=96.08  E-value=0.0063  Score=53.59  Aligned_cols=57  Identities=28%  Similarity=0.322  Sum_probs=46.3

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSP---SVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p---~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      ++...=.=||+|-.-||+.+++||++|+....-   ...||-|.+||.++.+|...|+..
T Consensus        32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~   91 (250)
T KOG4304|consen   32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS   91 (250)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            444566779999999999999999999975321   127899999999999999988764

>KOG3561|consensus

Probab=95.73  E-value=0.018  Score=58.02  Aligned_cols=55  Identities=25%  Similarity=0.373  Sum_probs=49.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        86 R~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      |..+|.=||+|-..+|.=.++|-.+||... .-.+|+=|..|||+|+..|..+..+
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~-~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNA-SLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcch-hcccCchHHHHHHHHHHHHHHHhhh
Confidence            788999999999999999999999999963 3679999999999999999877764

>KOG3558|consensus

Probab=87.46  E-value=0.67  Score=46.59  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy5916          93 ERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL  136 (190)
Q Consensus        93 ER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~  136 (190)
                      -|.|--.=|+-|.+|.++||..+ .-.--|-|+.|+|+||.|..
T Consensus        54 ARsRRsKEn~~FyeLa~~lPlp~-aisshLDkaSimRLtISyLR   96 (768)
T KOG3558|consen   54 ARSRRSKENEEFYELAKLLPLPA-AISSHLDKASIMRLTISYLR   96 (768)
T ss_pred             hhhhcccchHHHHHHHHhCCCcc-hhhhhhhhHHHHHHHHHHHH
Confidence            35566778999999999999765 36788999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2ql2_B	60	Crystal Structure Of The Basic-Helix-Loop-Helix Dom		6e-09

>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains Of The Heterodimer E47NEUROD1 BOUND TO DNA Length = 60

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R+  NARER RMH LN ALD LR V+P  +S + +KLSKI TL LAKNYI     AL E+
Sbjct: 3   RMKANARERNRMHGLNAALDNLRKVVP-CYSKT-QKLSKIETLRLAKNYIW----ALSEI 56
Query: 146 RR 147
            R
Sbjct: 57  LR 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	4e-23
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	2e-16
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	9e-12
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	3e-08
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	9e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	7e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	1e-06
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-05
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	3e-05
1a0a_A	63	BHLH, protein (phosphate system positive regulator	3e-04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 86.2 bits (214), Expect = 4e-23
 Identities = 32/58 (55%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
           R+  NARER RMH LN ALD LR V+P       +KLSKI TL LAKNYI   +  L 
Sbjct: 3   RMKANARERNRMHGLNAALDNLRKVVP--CYSKTQKLSKIETLRLAKNYIWALSEILR 58

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           K+       R     RERRR+  +N+A + L+       +   ++L K+  L  A  YI 
Sbjct: 4   KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN---QRLPKVEILRNAIRYIE 60

Query: 137 MQANALEE 144
                L +
Sbjct: 61  GLQALLRD 68

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 57.2 bits (138), Expect = 9e-12
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 86  RLNINARERRRMHDLNDALDEL-RAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE 144
           R + NA ER+R  D+N+A  EL R      H  S +  +K+  L  A   I      LE+
Sbjct: 6   RAHHNALERKRRRDINEAFRELGRMCQM--HLKSDKAQTKLLILQQAVQVI----LGLEQ 59

Query: 145 LRR 147
             R
Sbjct: 60  QVR 62

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R   N  ER+R ++L  +   LR  IP     +  K  K+  L  A  YIL      ++L
Sbjct: 7   RRTHNVLERQRRNELKRSFFALRDQIP--ELENNEKAPKVVILKKATAYILSVQAEEQKL 64

Query: 146 RRIITYIQAQ 155
                 ++ +
Sbjct: 65  ISEEDLLRKR 74

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 46.7 bits (111), Expect = 9e-08
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 90  NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRII 149
           N  E+ R   L  +L++L+ ++P    P   + + ++ L  AK +I    ++  +    I
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPL--GPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 150 TYIQAQ 155
             +Q +
Sbjct: 64  DQLQRE 69

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI--LMQANA-- 141
           R + NA ER+R   + D+   LR  +P   S    K S+   L  A  YI  + + N   
Sbjct: 3   RAHHNALERKRRDHIKDSFHSLRDSVP---SLQGEKASRAQILDKATEYIQYMRRKNHTH 59

Query: 142 ---LEELRRIITYIQAQ 155
              +++L+R    ++ Q
Sbjct: 60  QQDIDDLKRQNALLEQQ 76

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI--LMQANA-- 141
           R + NA ER+R   + D+   LR  +P   S    K S+   L  A  YI  + + N   
Sbjct: 13  RAHHNALERKRRDHIKDSFHSLRDSVP---SLQGEKASRAQILDKATEYIQYMRRKNHTH 69

Query: 142 ---LEELRR 147
              +++L+R
Sbjct: 70  QQDIDDLKR 78

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVR-KLSKIATLLLAKNYI 135
           R   N  ERRR   +N+ + +L  +IP +   S +   SK   L  A +YI
Sbjct: 6   RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYI 56

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 90  NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
           NA E+R    +ND + EL+ ++    +    KL+K A L  A +YI
Sbjct: 11  NAIEKRYRSSINDKIIELKDLVVGTEA----KLNKSAVLRKAIDYI 52

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 93  ERRRMHDLNDALDELRAVIP--YAHSPSVRKLSKIATLLLAKNYI--LMQANA 141
           E+ R + L  AL EL ++IP  +         SK  T+  A  YI  L Q  +
Sbjct: 10  EQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.89
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.88
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.83
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.81
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.68
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.67
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.63
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.56
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.49
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.42
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.23
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.1
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.1
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.09
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.01
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.38
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.1
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.94
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	87.59

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.89  E-value=8.1e-24  Score=147.44  Aligned_cols=58  Identities=55%  Similarity=0.748  Sum_probs=54.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE  144 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e  144 (190)
                      +|.++|+|||+||++||+||+.||.+||..  +.++|||||+||++||+||.+|+++|++
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~--~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCY--SKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSC--CSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCC--CCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999986  5799999999999999999999998853

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.88  E-value=1.8e-23  Score=149.09  Aligned_cols=61  Identities=26%  Similarity=0.335  Sum_probs=56.2

Q ss_pred             ccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5916          80 RQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE  143 (190)
Q Consensus        80 ~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~  143 (190)
                      .....+|.++|+|||+||+.||+||+.||++||..   .++|||||+||++||+||.+|+++|+
T Consensus         7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~---~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A            7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN---PNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC---TTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            34567999999999999999999999999999974   58999999999999999999999885

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.83  E-value=1.1e-21  Score=140.46  Aligned_cols=51  Identities=24%  Similarity=0.339  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5916          88 NINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAN  140 (190)
Q Consensus        88 ~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~  140 (190)
                      .||+|||+||++||+||+.||++||+.  |.++|||||||||+||+||.+|+.
T Consensus        17 ~a~erER~Rm~~lN~aF~~LR~~VP~~--p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           17 PAAEEPLSLLDDMNHCYSRLRELVPGV--PRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCBCCCSCSSSHHHHHHHHHHHHCCCC--CTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCccHHHHHHHHHHHHHHHHc
Confidence            579999999999999999999999996  699999999999999999999974

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.81  E-value=2.1e-20  Score=141.79  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          88 NINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL  145 (190)
Q Consensus        88 ~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~  145 (190)
                      .+..+||.||++||+||+.||++||+.  |.++|||||||||+||+||.+|+++|++.
T Consensus        28 ~~~~~~r~Rm~~lN~AF~~LR~~vP~~--p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           28 TPVDDPMSLLYNMNDCYSKLKELVPSI--PQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHCTTS--CSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHHHHHHHHHCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            446777999999999999999999986  68999999999999999999999999864

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.68  E-value=3.1e-17  Score=119.01  Aligned_cols=62  Identities=29%  Similarity=0.289  Sum_probs=50.1

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL  145 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~  145 (190)
                      ..+|..+|++||+|+..||++|+.||.+||.. .+.++++||++||+.||+||..|++.|.|.
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~-~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMH-LKSDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCC-CCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999942 135677799999999999999999998774

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.67  E-value=1.9e-16  Score=114.58  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=64.1

Q ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5916          82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQ  155 (190)
Q Consensus        82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~~  155 (190)
                      ...+|..+|++||+|+..||++|+.|+.+||..   .+.|+||++||+.||+||.+|+..++++...+..+..+
T Consensus         9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~---~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~   79 (80)
T 1hlo_A            9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSL---QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ   79 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG---TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCC---CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456899999999999999999999999999985   45789999999999999999999999998888777543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.63  E-value=1.2e-15  Score=110.76  Aligned_cols=65  Identities=26%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYI  152 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~  152 (190)
                      +|..+|.+||+|+..||++|+.|+.+||..   .+.|+||++||+.||+||.+|+..++++...+..+
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~---~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L   66 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL---QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGG---TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999985   46889999999999999999998777666655544

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=1.6e-14  Score=106.82  Aligned_cols=67  Identities=27%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITY  151 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~  151 (190)
                      ..+|..+|+.||+|...||++|+.||.+||..  +.+.|+||+.||+.||+||..|+.....+...++.
T Consensus         4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~--~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~   70 (88)
T 1nkp_A            4 NVKRRTHNVLERQRRNELKRSFFALRDQIPEL--ENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG--TTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999985  46799999999999999999999876655444443

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.49  E-value=1.3e-13  Score=100.59  Aligned_cols=65  Identities=22%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYI  152 (190)
Q Consensus        86 R~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~  152 (190)
                      |..+|+.||+|...||++|+.||..||..  +.+.|+||+.||+.|++||..|+....++......+
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~--~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG--PDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCC--SSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999985  478999999999999999999998876666555544

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.42  E-value=1e-12  Score=95.70  Aligned_cols=66  Identities=27%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQ  153 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q  153 (190)
                      .+|..+|..||+|...||++|..|+..||.    .+.|++|+.||..||+||.+|+..++.+......+.
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~----~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVG----TEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999997    468999999999999999999999988877666554

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.23  E-value=2.1e-12  Score=89.65  Aligned_cols=56  Identities=29%  Similarity=0.292  Sum_probs=48.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSP-SVRKLSKIATLLLAKNYILMQAN  140 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p-~~kKLSKietLr~Ai~YI~~L~~  140 (190)
                      +|..+|+.||+|...||++|++|+.+||..... ...|++|+.||..||+||.+|+.
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999985311 12489999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.10  E-value=2.8e-11  Score=84.56  Aligned_cols=57  Identities=28%  Similarity=0.234  Sum_probs=48.7

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSP--SVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p--~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      +|...+.-||.|...||.+|+.|+.+||.....  .+.++||.+||.+||+||.+|++.
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~   60 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999964211  258999999999999999999763

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.10  E-value=2.7e-10  Score=88.12  Aligned_cols=64  Identities=25%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRI  148 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~  148 (190)
                      .+|...|.-||+|...||+.|..|+..||... ..+.|++|..||..||+||.+|+..++.+..+
T Consensus        26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~-~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSN-DPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778999999999999999999999999853 24679999999999999999999888776643

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.09  E-value=4.5e-10  Score=80.61  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5916          82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE  143 (190)
Q Consensus        82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~  143 (190)
                      ...+|...|..||+|...||+.|.+|+..||.    ...|+.|..||+.||+||..|+..+.
T Consensus         5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~----~~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B            5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS----CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC----CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            34578899999999999999999999999995    46899999999999999999987653

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=81.96  Aligned_cols=58  Identities=29%  Similarity=0.405  Sum_probs=50.9

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      +.+|...|.-||+|...||++|++|+..||... ....|+.|+.||++||+||..|+..
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~-~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCN-AMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH-TCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccc-cccccccHHHHHHHHHHHHHHHhcC
Confidence            457888999999999999999999999999742 2468999999999999999988654

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.38  E-value=4.6e-07  Score=78.91  Aligned_cols=55  Identities=24%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      +.+|..+|..||+|...||..|.+|+.+||.    ...||.|..||++||.||..|..+
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~----~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCS----SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC----CCCCcCHHHHHHHHHHHHHHHHhh
Confidence            3467788999999999999999999999993    468999999999999999988754

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.10  E-value=2e-06  Score=75.97  Aligned_cols=56  Identities=29%  Similarity=0.402  Sum_probs=49.3

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA  139 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~  139 (190)
                      +.+|...|.-||+|...||..|.+|+.+||... ....||.|..||++||.||..|+
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~-~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCN-AMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHHHhh
Confidence            446788999999999999999999999999642 24689999999999999999876

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.94  E-value=3.8e-05  Score=56.63  Aligned_cols=48  Identities=21%  Similarity=0.310  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          99 DLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRR  147 (190)
Q Consensus        99 ~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~  147 (190)
                      +||+.+.+|...||... ..+-|++|-.||+.|++||.+|++....++.
T Consensus         6 nIN~~I~EL~~LiP~~~-~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            6 NINDRIKELGTLIPKSN-DPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHSCCCC-CTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hHHHhhhhhhccCCCCC-CcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999753 3678999999999999999999876544433

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=87.59  E-value=1.1  Score=35.46  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy5916          98 HDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQ  138 (190)
Q Consensus        98 ~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L  138 (190)
                      -.|+-+|.+|.+.||-. -....+|.|.-+|+.|.++...|
T Consensus        94 PtId~gfqrl~k~~pr~-pgdpe~lpk~~~lkraa~l~e~~  133 (138)
T 3muj_A           94 PTIDYGFQRLQKVIPRH-PGDPERLPKEVLLKRAADLVEAL  133 (138)
T ss_dssp             CCHHHHHHHHHHHSCCC-TTCCSSCCHHHHHHHHHHHHHHH
T ss_pred             CccccchhhhccccCCC-CCChhhhhHHHHHHHHHHHHHHH
Confidence            46899999999999974 33669999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	4e-13
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-12
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	5e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	5e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	1e-11
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-10
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-08

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 4e-13
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 77  KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
           K+       R     RERRR+  +N+A + L+       +   ++L K+  L  A  YI 
Sbjct: 4   KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN---QRLPKVEILRNAIRYIE 60

Query: 137 MQANALEE 144
                L +
Sbjct: 61  GLQALLRD 68

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSV-RKLSKIATLLLAKNYI--LMQANA 141
           R   N  ERRR   +N+ + +L  +IP +   S     SK   L  A +YI  L Q+N 
Sbjct: 6   RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 5e-12
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R   N  E+ R   L  +L++L+ ++P    P   + + ++ L  AK +I    ++  + 
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVP--LGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

Query: 146 RRIITYIQAQ 155
              I  +Q +
Sbjct: 60  VHQIDQLQRE 69

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 5e-12
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R + NA ER+R   + D+   LR  +P        K S+   L  A  YI          
Sbjct: 3   RAHHNALERKRRDHIKDSFHSLRDSVPSLQGE---KASRAQILDKATEYIQYMRRKNHTH 59

Query: 146 RRIITYIQAQ 155
           ++ I  ++ Q
Sbjct: 60  QQDIDDLKRQ 69

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R   N  ER+R ++L  +   LR  IP     +  K  K+  L  A  YIL      ++L
Sbjct: 7   RRTHNVLERQRRNELKRSFFALRDQIP--ELENNEKAPKVVILKKATAYILSVQAEEQKL 64

Query: 146 RRIITYIQAQ 155
                 ++ +
Sbjct: 65  ISEEDLLRKR 74

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (126), Expect = 1e-10
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIP--YAHSPSVRKLSKIATLLLAKNYI 135
           R +    E+ R + L  AL EL ++IP  +         SK  T+  A  YI
Sbjct: 3   RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYI 54

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 86  RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
           R   NA E+R    +ND + EL+ ++      +  KL+K A L  A +YI    ++ ++L
Sbjct: 7   RTAHNAIEKRYRSSINDKIIELKDLVV----GTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62

Query: 146 RRIITYIQAQ 155
           ++    ++  
Sbjct: 63  KQENLSLRTA 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.69
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.54
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.42
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.31
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.91

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.3e-17  Score=116.28  Aligned_cols=61  Identities=26%  Similarity=0.335  Sum_probs=55.2

Q ss_pred             ccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5916          80 RQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE  143 (190)
Q Consensus        80 ~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~  143 (190)
                      .....+|..+|.+||.|...||++|+.|+..||..   ..+|++|++||+.||+||.+|+++|+
T Consensus         7 ~~~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~---~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_           7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN---PNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC---TTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            34556889999999999999999999999999986   46799999999999999999998775

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5e-15  Score=105.55  Aligned_cols=65  Identities=26%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYI  152 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~  152 (190)
                      +|..+|++||+|...||++|+.|+.+||..   .+.|+||++||+.|++||..|+..+..+...+..+
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~---~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL---QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGG---TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999975   57899999999999999999988876666555544

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=104.38  Aligned_cols=67  Identities=27%  Similarity=0.277  Sum_probs=59.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYI  152 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~  152 (190)
                      .+|..+|++||+|...||++|+.|+.+||..  +...|+||++||..||+||..|+..++++...+..+
T Consensus         5 ~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~--~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   71 (88)
T d1nkpa_           5 VKRRTHNVLERQRRNELKRSFFALRDQIPEL--ENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL   71 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG--TTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999975  367899999999999999999999887776655544

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.6e-14  Score=100.97  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=58.5

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQ  153 (190)
Q Consensus        86 R~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q  153 (190)
                      |..+|+.||+|...||++|+.|+.+||..  +...|+||++||..|++||..|+..+.++...+..+.
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~--~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG--PDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCC--SSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999975  4678999999999999999999999888766665543

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3e-13  Score=95.93  Aligned_cols=67  Identities=27%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916          83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQ  153 (190)
Q Consensus        83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q  153 (190)
                      ..+|..+|+.||+|...||++|+.|+..||.    ...|++|++||..|++||..|+..++++...+..+.
T Consensus         4 ~~kR~~H~~~Er~RR~~in~~~~~L~~llP~----~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG----TEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478899999999999999999999999996    457999999999999999999998888777666553

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=7.4e-14  Score=95.35  Aligned_cols=57  Identities=28%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916          85 VRLNINARERRRMHDLNDALDELRAVIPYA--HSPSVRKLSKIATLLLAKNYILMQANA  141 (190)
Q Consensus        85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~--~~p~~kKLSKietLr~Ai~YI~~L~~~  141 (190)
                      +|..+|..||+|...||++|+.|+.+||..  ....+.|++|.+||..|++||.+|++.
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~   60 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHh
Confidence            577899999999999999999999999941  012679999999999999999999753

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-13  Score=93.17  Aligned_cols=57  Identities=28%  Similarity=0.292  Sum_probs=49.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q psy5916          84 TVRLNINARERRRMHDLNDALDELRAVIPYAHS-PSVRKLSKIATLLLAKNYILMQAN  140 (190)
Q Consensus        84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~-p~~kKLSKietLr~Ai~YI~~L~~  140 (190)
                      .+|..+|..||+|...||++|+.|+.+||.... ..+.|++|++||..|++||..|++
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            357789999999999999999999999997532 245799999999999999998874

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9e-10  Score=74.35  Aligned_cols=53  Identities=23%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5916          99 DLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQ  155 (190)
Q Consensus        99 ~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~~  155 (190)
                      .||+.|..||..||.    ...|.+|++||..||+||..|+....++......+...
T Consensus         3 ~in~~f~~L~~lvP~----~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~   55 (61)
T d1uklc_           3 SINDKIIELKDLVMG----TDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLA   55 (61)
T ss_dssp             CHHHHHHHHHHHHSC----SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999996    35799999999999999999999999988877766543