Psyllid ID: psy592

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSSIKNN
Secondary Structure (PSIPRED)
cccccEEEEccEEccccccccccccccccccccccccccccccccccccEEccccccEEEEccccccccccccccccEEEccccEEEEEccccccccccEEEEEEEcccccEEEEEEEccccccEEEEEEEcccEEEEEEccccccccccccccEEccccEEEEEEEcccccccccEEcccEEEccccccEEEccccEEEEEEEcccHHHEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccEcccccEEEEcccccccccccEEEEEEEEEcccEEEEEEcccccccEEEEEEEccEEEEEEEcccccEEEEEEccEEEccccEEEEEEEEEcccEEEEEEcccccccccccEEEEEEccccEEEEEcccEEEEEEEEEEccEEEEcccccccHHHcHHHEEEEccccccccccccEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHEcccccccEcccccHHccccccccc
Coil and Loop (DISEMBL)
MENILNIVTITYLydlanpglhknsvpgcpateavcnahsrlhcypehgvcvgsmhtakcqclpgwsgtgcvtptspvtfkpqsYIKYALsfepdkytTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLnnlktdekDIWLNAIKDSKLRFRYNLnnlktdekdiWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRReahikypgpdddvreniinyddegggeddmtafditplqipiggphpemnnkipyglgpmpmgvepnvgiFIEEhkkradadpnappfddlrnyayegggstagslsslasgssiknn
Flexible Loop (DISEMBL)
MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGElfrlsdqhnreyaileikdsklrFRYNLnnlktdekdiwlnaikdsklRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAhikypgpdddvreNIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGStagslsslasgssiknn
Low Complexity Region (SEG)
MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRadadpnappfddLRNYAYEgggstagslsslasgssIKNN
Disordered region (IsUnstruct)
***ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYD********MTAFDITPLQIPIG*********IPYGLGPMPMGVEPNVGIFI**********************************************
Disordered Region (DISOPRED)
*ENILNIVTITYLYDLANPGL***********EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRR**********DDVRENIINYDDEGGGEDDMTAFDIT*********************************IFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTA***************
Disordered Region (DISEMBL)
MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGST****************
Disordered Region (DISPRO)
*ENILNIVTITYLYDLANPGLH**SVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGG******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSSIKNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
O15943	3097	Neural-cadherin OS=Drosop	yes	N/A	0.507	0.055	0.561	1e-59
Q9VJB6	2215	Putative neural-cadherin	no	N/A	0.507	0.077	0.487	2e-49
O93319	792	Cadherin-11 OS=Gallus gal	yes	N/A	0.412	0.176	0.444	2e-19
P55288	796	Cadherin-11 OS=Mus muscul	yes	N/A	0.412	0.175	0.444	3e-19
P55287	796	Cadherin-11 OS=Homo sapie	yes	N/A	0.412	0.175	0.444	3e-19
Q08DJ5	790	Cadherin-18 OS=Bos taurus	no	N/A	0.418	0.179	0.36	5e-18
Q13634	790	Cadherin-18 OS=Homo sapie	no	N/A	0.418	0.179	0.353	8e-18
Q9H159	772	Cadherin-19 OS=Homo sapie	no	N/A	0.345	0.151	0.439	8e-18
P70407	786	Cadherin-9 OS=Mus musculu	no	N/A	0.395	0.170	0.375	3e-17
Q5RJH3	794	Cadherin-12 OS=Mus muscul	no	N/A	0.401	0.171	0.386	3e-17

>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2

 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 136/203 (66%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVC-NAHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+V  + LYDLA+PGL +NSV GCP TE VC    +   C+ EHG CVGS+  A+C C
Sbjct: 2560 IRNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCAQTETTARCW-EHGNCVGSLSEARCHC 2618

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G  C  PT P TFK QSY+KYALSFEPD+++TQ+QL+FRTREE+GELFR+SDQHN
Sbjct: 2619 RPGWTGPACNIPTIPTTFKAQSYVKYALSFEPDRFSTQVQLRFRTREEYGELFRVSDQHN 2678

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REY ILEIKD  L FRYNLN+L+T+EKD+WLNAI                          
Sbjct: 2679 REYGILEIKDGHLHFRYNLNSLRTEEKDLWLNAI-------------------------- 2712

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
             VNDGQWH VK    GSA  + L
Sbjct: 2713 VVNDGQWHVVKVNRYGSAATLEL 2735

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. May associate with arm neural isoform and participate in the transmission of developmental information.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VJB6|CADN2_DROME Putative neural-cadherin 2 OS=Drosophila melanogaster GN=CadN2 PE=3 SV=2

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 127/203 (62%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVC-NAHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N++  +  YDLA P L +NS P CP T+ VC        C+ EHG CV S+  AKC C
Sbjct: 1362 IRNVIHNSEHYDLAFPALARNSFPACPQTDEVCLKTEHTARCW-EHGNCVASLVQAKCHC 1420

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW G GC  PT P TFK QSY+K+ALSFEPD+++TQLQL+FRTRE+ GELFR+SDQH+
Sbjct: 1421 QPGWMGPGCNVPTIPTTFKAQSYVKFALSFEPDRFSTQLQLRFRTREQGGELFRVSDQHH 1480

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILE++   L+FRYNLN+++ +E+ + L AI                          
Sbjct: 1481 REYAILELRRGHLQFRYNLNSMRNEEQLLTLTAI-------------------------- 1514

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AVNDGQWH ++    GSA  + L
Sbjct: 1515 AVNDGQWHVIRISRYGSAALMEL 1537

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells.

Drosophila melanogaster (taxid: 7227)

>sp|O93319|CAD11_CHICK Cadherin-11 OS=Gallus gallus GN=CDH11 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSR-RREAHIKYPGPDDDVRENIINYDDEGGGEDD 250
           + TG+ + +   I    V+V++FV   R ++E  I +   ++DVRENII YDDEGGGE+D
Sbjct: 611 LSTGALIAILACIVILLVIVVLFVTLKRQKKEPLIVFE--EEDVRENIITYDDEGGGEED 668

Query: 251 MTAFDITPLQIP--IGGPHPEMNNKIPY------GLGPMPMGVEPNVGIFIEEHKKRADA 302
             AFDI  LQ P  I G  P  + K  Y      GL P P  V+  V  FI    + AD 
Sbjct: 669 TEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVD--VDDFINTRIQEADN 726

Query: 303 DPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
           DP APP+D ++ Y YEG GS AGSLSSL S ++
Sbjct: 727 DPTAPPYDSIQIYGYEGRGSVAGSLSSLESATT 759

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Gallus gallus (taxid: 9031)

>sp|P55288|CAD11_MOUSE Cadherin-11 OS=Mus musculus GN=Cdh11 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSR-RREAHIKYPGPDDDVRENIINYDDEGGGEDD 250
           + TG+ + +   I    V+V++FV   R ++E  I +   ++DVRENII YDDEGGGE+D
Sbjct: 615 LSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFE--EEDVRENIITYDDEGGGEED 672

Query: 251 MTAFDITPLQIP--IGGPHPEMNNKIPY------GLGPMPMGVEPNVGIFIEEHKKRADA 302
             AFDI  LQ P  I G  P  + K  Y      GL P P  V+  V  FI    + AD 
Sbjct: 673 TEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVD--VDDFINTRIQEADN 730

Query: 303 DPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
           DP APP+D ++ Y YEG GS AGSLSSL S ++
Sbjct: 731 DPTAPPYDSIQIYGYEGRGSVAGSLSSLESATT 763

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Mus musculus (taxid: 10090)

>sp|P55287|CAD11_HUMAN Cadherin-11 OS=Homo sapiens GN=CDH11 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 89/153 (58%), Gaps = 13/153 (8%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSR-RREAHIKYPGPDDDVRENIINYDDEGGGEDD 250
           + TG+ + +   I    V+V++FV   R ++E  I +   ++DVRENII YDDEGGGE+D
Sbjct: 615 LSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFE--EEDVRENIITYDDEGGGEED 672

Query: 251 MTAFDITPLQIP--IGGPHPEMNNKIPY------GLGPMPMGVEPNVGIFIEEHKKRADA 302
             AFDI  LQ P  I G  P  + K  Y      GL P P  V+  V  FI    + AD 
Sbjct: 673 TEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVD--VDDFINTRIQEADN 730

Query: 303 DPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
           DP APP+D ++ Y YEG GS AGSLSSL S ++
Sbjct: 731 DPTAPPYDSIQIYGYEGRGSVAGSLSSLESATT 763

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

>sp|Q08DJ5|CAD18_BOVIN Cadherin-18 OS=Bos taurus GN=CDH18 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDM 251
           + TG+ + + L +     +V++F+   R ++  +     ++DVREN++ YDDEGGGE+D 
Sbjct: 611 LSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIIS--EEDVRENVVTYDDEGGGEEDT 668

Query: 252 TAFDITPLQIPIGGPHPEMNNKI--PYGLGPMPMGVEP----NVGIFIEEHKKRADADPN 305
            AFDIT L+ P      +    I     L P    +      +V  FI++    AD DP+
Sbjct: 669 EAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLSTLESIDVQEFIKQRLAEADLDPS 728

Query: 306 APPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
            PP+D L+ YAYEG  S AGS+SSL S ++
Sbjct: 729 VPPYDSLQTYAYEGQRSEAGSISSLDSATT 758

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Bos taurus (taxid: 9913)

>sp|Q13634|CAD18_HUMAN Cadherin-18 OS=Homo sapiens GN=CDH18 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 8/150 (5%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDM 251
           + TG+ + + L +     +V++F+   R ++  +     ++DVREN++ YDDEGGGE+D 
Sbjct: 611 LSTGALIAILLCVLILLAIVVLFITLRRSKKEPLIIS--EEDVRENVVTYDDEGGGEEDT 668

Query: 252 TAFDITPLQIPIGGPHPEMNNKIPYGLGPMPMGVEP------NVGIFIEEHKKRADADPN 305
            AFDIT L+ P      +    I   +   P           +V  FI++    AD DP+
Sbjct: 669 EAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTSSTLESIDVQEFIKQRLAEADLDPS 728

Query: 306 APPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
            PP+D L+ YAYEG  S AGS+SSL S ++
Sbjct: 729 VPPYDSLQTYAYEGQRSEAGSISSLDSATT 758

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

>sp|Q9H159|CAD19_HUMAN Cadherin-19 OS=Homo sapiens GN=CDH19 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 219 RRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQ---IPIGGPHPEMNNKIP 275
           ++R   I +P   +D RENI  YDDEGGGE+D  AFDI  L+   I       +  +   
Sbjct: 619 KQRRKQILFPEKSEDFRENIFQYDDEGGGEEDTEAFDIAELRSSTIMRERKTRKTTSAEI 678

Query: 276 YGLGPMPMGVEPNVGIF---IEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLAS 332
             L    + V P+  IF   I E  + A+ DP APPFD L+ YA+EG GS AGSLSSL S
Sbjct: 679 RSLYRQSLQVGPDSAIFRKFILEKLEEANTDPCAPPFDSLQTYAFEGTGSLAGSLSSLES 738

Query: 333 GSS 335
             S
Sbjct: 739 AVS 741

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Homo sapiens (taxid: 9606)

>sp|P70407|CADH9_MOUSE Cadherin-9 OS=Mus musculus GN=Cdh9 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 18/152 (11%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPG--PDDDVRENIINYDDEGGGED 249
           + TG+ + + L +     L+++F    R+R+   K P     DDVR+NI+ Y+DEGGGE+
Sbjct: 610 LSTGALIAILLCVVILLTLIVLFAALKRQRK---KEPLIISKDDVRDNIVTYNDEGGGEE 666

Query: 250 DMTAFDITPLQIPIGGPHPEMNNKIPYGLGP---------MPMGVEPNVGIFIEEHKKRA 300
           D  AFDI  L+     P    ++K+   + P         +P+    +V  FI    K  
Sbjct: 667 DTQAFDIGTLR----NPEAREDSKLRRDVMPETIFQIRRTVPLWENIDVQDFIHRRLKEN 722

Query: 301 DADPNAPPFDDLRNYAYEGGGSTAGSLSSLAS 332
           D+DP+APP+D L  YAYEG  S A SLSSL S
Sbjct: 723 DSDPSAPPYDSLATYAYEGNDSVANSLSSLES 754

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Mus musculus (taxid: 10090)

>sp|Q5RJH3|CAD12_MOUSE Cadherin-12 OS=Mus musculus GN=Cdh12 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 81/150 (54%), Gaps = 14/150 (9%)

Query: 192 VKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGEDDM 251
           + TG+ + + L +     +V+++V   R+R+         +D+R+N+I+YDDEGGGE+D 
Sbjct: 612 LSTGALIAILLCMVILLAIVVLYVALRRQRKKDTLMTS-KEDIRDNVIHYDDEGGGEEDT 670

Query: 252 TAFDITPLQIPIGGPHPEMNNKIPYGLGPMPM-------GVEPNVGI--FIEEHKKRADA 302
            AFDI  L+     P     NKI   + P  +        VE N  I  FI    +  DA
Sbjct: 671 QAFDIGALR----NPKVIEENKIRRDIKPDSLCLSRQRPQVEDNTDIRDFIHRRLQENDA 726

Query: 303 DPNAPPFDDLRNYAYEGGGSTAGSLSSLAS 332
           DP APP+D L  YAYEG GS A SLSS+ S
Sbjct: 727 DPAAPPYDSLATYAYEGNGSVAESLSSIDS 756

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
345493993	3062	PREDICTED: LOW QUALITY PROTEIN: neural-c	0.507	0.056	0.586	1e-61
110764123	3043	PREDICTED: neural-cadherin [Apis mellife	0.507	0.056	0.586	8e-61
307174406	1686	Neural-cadherin [Camponotus floridanus]	0.507	0.102	0.581	4e-60
350418529	3006	PREDICTED: neural-cadherin-like [Bombus	0.507	0.057	0.581	4e-60
340722540	3006	PREDICTED: neural-cadherin-like [Bombus	0.507	0.057	0.581	5e-60
307200809	1625	Neural-cadherin [Harpegnathos saltator]	0.507	0.105	0.586	9e-60
322793232	1797	hypothetical protein SINV_09531 [Solenop	0.507	0.095	0.581	9e-60
383864729	1849	PREDICTED: neural-cadherin-like [Megachi	0.507	0.093	0.581	3e-59
189237687	3035	PREDICTED: similar to Neural-cadherin pr	0.510	0.057	0.554	2e-58
158298606	1698	AGAP009726-PA [Anopheles gambiae str. PE	0.510	0.101	0.559	5e-58

>gi|345493993|ref|XP_003427197.1| PREDICTED: LOW QUALITY PROTEIN: neural-cadherin-like [Nasonia vitripennis]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 142/203 (69%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 2518 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTTRCW-EHGTCVGSFSEARCQC 2576

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+TPT P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 2577 NPGWTGPGCMTPTIPTTFKPQSYVKYALSFEPDKYSTQIQLRFRTREVHGELFRVSDQHN 2636

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYA+LEIKDS+LRFRYNLNN++T+E+DIWL AI                          
Sbjct: 2637 REYAVLEIKDSRLRFRYNLNNMRTEERDIWLTAI-------------------------- 2670

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 2671 AVDDGQWHTVRVSRYGSAATLEL 2693

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110764123|ref|XP_392099.3| PREDICTED: neural-cadherin [Apis mellifera]

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 141/203 (69%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 2502 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFVEARCQC 2560

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+TPT P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 2561 NPGWTGPGCMTPTIPTTFKPQSYVKYALSFEPDKYSTQVQLRFRTREVHGELFRVSDQHN 2620

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL AI                          
Sbjct: 2621 REYAILEIKDSRLHFRYNLNSLRTEERDIWLTAI-------------------------- 2654

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 2655 AVDDGQWHTVRVSRYGSAATLEL 2677

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174406|gb|EFN64925.1| Neural-cadherin [Camponotus floridanus]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 142/203 (69%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   +   C+ EHG CVGS   A+CQC
Sbjct: 1178 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQEATFRCW-EHGTCVGSFTEARCQC 1236

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+TPT P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 1237 NPGWTGPGCMTPTIPTTFKPQSYVKYALSFEPDKYSTQMQLRFRTREIHGELFRVSDQHN 1296

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL+AI                          
Sbjct: 1297 REYAILEIKDSRLHFRYNLNSLRTEERDIWLSAI-------------------------- 1330

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 1331 AVDDGQWHTVRVSRYGSAATLEL 1353

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418529|ref|XP_003491887.1| PREDICTED: neural-cadherin-like [Bombus impatiens]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 140/203 (68%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 2477 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFTEARCQC 2535

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+T T P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 2536 NPGWTGPGCMTSTIPTTFKPQSYVKYALSFEPDKYSTQVQLRFRTREVHGELFRVSDQHN 2595

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL AI                          
Sbjct: 2596 REYAILEIKDSRLHFRYNLNSLRTEERDIWLTAI-------------------------- 2629

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 2630 AVDDGQWHTVRVSRYGSAATLEL 2652

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722540|ref|XP_003399662.1| PREDICTED: neural-cadherin-like [Bombus terrestris]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 140/203 (68%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 2477 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFTEARCQC 2535

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+T T P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 2536 NPGWTGPGCMTSTIPTTFKPQSYVKYALSFEPDKYSTQVQLRFRTREVHGELFRVSDQHN 2595

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL AI                          
Sbjct: 2596 REYAILEIKDSRLHFRYNLNSLRTEERDIWLTAI-------------------------- 2629

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 2630 AVDDGQWHTVRVSRYGSAATLEL 2652

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200809|gb|EFN80862.1| Neural-cadherin [Harpegnathos saltator]

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 141/203 (69%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 1096 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFTEARCQC 1154

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+TPT P TFKPQSY KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 1155 NPGWTGPGCMTPTIPTTFKPQSYAKYALSFEPDKYSTQVQLRFRTREIHGELFRVSDQHN 1214

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL+AI                          
Sbjct: 1215 REYAILEIKDSRLHFRYNLNSLRTEERDIWLSAI-------------------------- 1248

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 1249 AVDDGQWHTVRVSRYGSAATLEL 1271

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322793232|gb|EFZ16889.1| hypothetical protein SINV_09531 [Solenopsis invicta]

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 142/203 (69%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   ++CQC
Sbjct: 1311 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFTESRCQC 1369

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
             PGW+G GC+TPT P TFKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 1370 NPGWTGPGCMTPTIPTTFKPQSYVKYALSFEPDKYSTQVQLRFRTREIHGELFRVSDQHN 1429

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL+AI                          
Sbjct: 1430 REYAILEIKDSRLHFRYNLNSLRTEERDIWLSAI-------------------------- 1463

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH V+    GSA  + L
Sbjct: 1464 AVDDGQWHTVRVSRYGSAATLEL 1486

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864729|ref|XP_003707830.1| PREDICTED: neural-cadherin-like [Megachile rotundata]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 140/203 (68%), Gaps = 31/203 (15%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQC 62
            I N+   + LYDLA+PGL +NSV GCP TE +CN   S   C+ EHG CVGS   A+CQC
Sbjct: 1320 IKNLFHNSKLYDLAHPGLSRNSVAGCPQTEEICNNQESTFRCW-EHGTCVGSFTEARCQC 1378

Query: 63   LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
              GW+G GC+TPT P +FKPQSY+KYALSFEPDKY+TQ+QL+FRTRE  GELFR+SDQHN
Sbjct: 1379 NSGWTGPGCMTPTIPTSFKPQSYVKYALSFEPDKYSTQIQLRFRTREVHGELFRVSDQHN 1438

Query: 123  REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
            REYAILEIKDS+L FRYNLN+L+T+E+DIWL AI                          
Sbjct: 1439 REYAILEIKDSRLHFRYNLNSLRTEERDIWLTAI-------------------------- 1472

Query: 183  AVNDGQWHFVKT---GSALFVTL 202
            AV+DGQWH VK    GSA  + L
Sbjct: 1473 AVDDGQWHTVKVSRYGSAATLEL 1495

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237687|ref|XP_969192.2| PREDICTED: similar to Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin) [Tribolium castaneum]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 136/202 (67%), Gaps = 29/202 (14%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL 63
            I N+   + LYDLA+PGL +NSV GCP TE VC      H   EHG CVGS + AKCQC 
Sbjct: 2480 IRNLFHNSKLYDLAHPGLSRNSVAGCPQTEEVCGRSDATHRCWEHGTCVGSFNEAKCQCK 2539

Query: 64   PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR 123
            PGW+G  C+ PT P +FKPQSY+KYALSFEPD+++TQ+QL+FRTREE GELFR+SDQHNR
Sbjct: 2540 PGWTGPACLHPTIPTSFKPQSYVKYALSFEPDRFSTQIQLRFRTREEHGELFRVSDQHNR 2599

Query: 124  EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVA 183
            EY ILEIKDS+L FRYNLN+L+T+EKD                          IWL++V 
Sbjct: 2600 EYGILEIKDSRLYFRYNLNSLRTEEKD--------------------------IWLSSVT 2633

Query: 184  VNDGQWHFVKT---GSALFVTL 202
            V+DGQWH  +    GSA  + L
Sbjct: 2634 VDDGQWHVARVSRYGSAATLEL 2655

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298606|ref|XP_001238044.2| AGAP009726-PA [Anopheles gambiae str. PEST] gi|157013965|gb|EAU76028.2| AGAP009726-PA [Anopheles gambiae str. PEST]

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 138/202 (68%), Gaps = 29/202 (14%)

Query: 4    ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL 63
            I N+V  + LYDLA+PGL +NSV GCP TE VC+   +     EHG CVGS   A+CQC 
Sbjct: 1162 IKNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCSQSEQTSRCWEHGNCVGSFTEARCQCR 1221

Query: 64   PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR 123
            PGW+G  C  PT P TFK QSY+KYALSFEPD+++TQ+QL+FRTRE+ GELFR+SDQHNR
Sbjct: 1222 PGWTGPACNIPTIPTTFKQQSYVKYALSFEPDRFSTQIQLRFRTREQHGELFRVSDQHNR 1281

Query: 124  EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVA 183
            EY ILEIKD++LRFRYNLN+L+T+E+DIWLNAI                          A
Sbjct: 1282 EYGILEIKDARLRFRYNLNSLRTEERDIWLNAI--------------------------A 1315

Query: 184  VNDGQWHFVKT---GSALFVTL 202
            V+DGQWH V+    GSA  + L
Sbjct: 1316 VDDGQWHVVRVNRHGSAATLEL 1337

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
FB|FBgn0015609	3097	CadN "Cadherin-N" [Drosophila	0.448	0.049	0.655	8.6e-92
FB|FBgn0262018	2215	CadN2 "Cadherin-N2" [Drosophil	0.448	0.068	0.564	1.6e-66
ZFIN|ZDB-GENE-100922-84	2780	si:dkey-22o22.2 "si:dkey-22o22	0.404	0.049	0.326	1.9e-19
UNIPROTKB|F1NHQ1	2501	LOC427547 "Uncharacterized pro	0.383	0.051	0.312	1.7e-18
UNIPROTKB|F1NBM7	2449	LOC414835 "Uncharacterized pro	0.404	0.055	0.311	8.5e-18
UNIPROTKB|F1P3P7	2530	LOC414835 "Uncharacterized pro	0.404	0.054	0.304	3.7e-17
UNIPROTKB|F1NHQ5	2500	LOC427547 "Uncharacterized pro	0.383	0.052	0.312	3.8e-17
UNIPROTKB|F1NJK1	2537	LOC427547 "Uncharacterized pro	0.383	0.051	0.312	3.3e-16
ZFIN|ZDB-GENE-980526-170	800	cdh11 "cadherin 11, osteoblast	0.587	0.248	0.274	7.4e-10
UNIPROTKB|K7GLK6	670	CDH11 "Uncharacterized protein	0.483	0.244	0.299	7.9e-09

FB|FBgn0015609 CadN "Cadherin-N" [Drosophila melanogaster (taxid:7227)]

 Score = 556 (200.8 bits), Expect = 8.6e-92, Sum P(2) = 8.6e-92
 Identities = 101/154 (65%), Positives = 122/154 (79%)

Query:     4 ILNIVTITYLYDLANPGLHKNSVPGCPATEAVC-NAHSRLHCYPEHGVCVGSMHTAKCQC 62
             I N+V  + LYDLA+PGL +NSV GCP TE VC    +   C+ EHG CVGS+  A+C C
Sbjct:  2560 IRNLVHNSKLYDLAHPGLSRNSVAGCPQTEEVCAQTETTARCW-EHGNCVGSLSEARCHC 2618

Query:    63 LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
              PGW+G  C  PT P TFK QSY+KYALSFEPD+++TQ+QL+FRTREE+GELFR+SDQHN
Sbjct:  2619 RPGWTGPACNIPTIPTTFKAQSYVKYALSFEPDRFSTQVQLRFRTREEYGELFRVSDQHN 2678

Query:   123 REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAI 156
             REY ILEIKD  L FRYNLN+L+T+EKD+WLNAI
Sbjct:  2679 REYGILEIKDGHLHFRYNLNSLRTEEKDLWLNAI 2712

GO:0005911 "cell-cell junction" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007413 "axonal fasciculation" evidence=TAS

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=NAS

GO:0007412 "axon target recognition" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0007411 "axon guidance" evidence=IGI;IMP;NAS

GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0045463 "R8 cell development" evidence=IMP

GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA

GO:0045467 "R7 cell development" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0045296 "cadherin binding" evidence=IPI

GO:0005509 "calcium ion binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0262018 CadN2 "Cadherin-N2" [Drosophila melanogaster (taxid:7227)]

 Score = 467 (169.5 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
 Identities = 87/154 (56%), Positives = 112/154 (72%)

Query:     4 ILNIVTITYLYDLANPGLHKNSVPGCPATEAVC-NAHSRLHCYPEHGVCVGSMHTAKCQC 62
             I N++  +  YDLA P L +NS P CP T+ VC        C+ EHG CV S+  AKC C
Sbjct:  1362 IRNVIHNSEHYDLAFPALARNSFPACPQTDEVCLKTEHTARCW-EHGNCVASLVQAKCHC 1420

Query:    63 LPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
              PGW G GC  PT P TFK QSY+K+ALSFEPD+++TQLQL+FRTRE+ GELFR+SDQH+
Sbjct:  1421 QPGWMGPGCNVPTIPTTFKAQSYVKFALSFEPDRFSTQLQLRFRTREQGGELFRVSDQHH 1480

Query:   123 REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAI 156
             REYAILE++   L+FRYNLN+++ +E+ + L AI
Sbjct:  1481 REYAILELRRGHLQFRYNLNSMRNEEQLLTLTAI 1514

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0045463 "R8 cell development" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

ZFIN|ZDB-GENE-100922-84 si:dkey-22o22.2 "si:dkey-22o22.2" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 45/138 (32%), Positives = 65/138 (47%)

Query:     6 NIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPG 65
             N+V  + +YDL++    +N+ PGC  T+ VC       C   HG C+G   +  C C PG
Sbjct:  2217 NLVVDSQVYDLSSAAESENTAPGCALTDGVCLTAGGPSC-GVHGRCLGEWGSFSCDCHPG 2275

Query:    66 WSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREY 125
             +SG  C       +F+  S ++Y L        TQ     RTR   G L  ++ +   E+
Sbjct:  2276 YSGHKCDKALPEWSFERDSVLRYQLRGGGSPRRTQAHFLLRTRSSTGTLLSMASRDANEF 2335

Query:   126 AILEIKDSKLRFRYNLNN 143
              ILEI D  L  R NL +
Sbjct:  2336 IILEIVDGYLNVRANLGD 2353

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NHQ1 LOC427547 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 41/131 (31%), Positives = 59/131 (45%)

Query:    13 LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV 72
             +YDL +P    NS PGC  T+  C A     C   HG C+G   +  C CLPG+ G  C 
Sbjct:  1994 VYDLQSPAESLNSFPGCMLTDGSCEAMGSSSC-GIHGRCLGDWGSFGCHCLPGYYGYRCD 2052

Query:    73 TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKD 132
                   TF P S+I+Y L        T  +   RTR+    +  +  ++  E+  L++  
Sbjct:  2053 KVAREYTFGPGSHIRYQLPISVPARRTLFEAMIRTRQPDSVITSMLSRNKDEHITLQVVR 2112

Query:   133 SKLRFRYNLNN 143
               L   YNL +
Sbjct:  2113 GFLAVSYNLGD 2123

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NBM7 LOC414835 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
 Identities = 43/138 (31%), Positives = 62/138 (44%)

Query:     4 ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL 63
             I N+V  T +YDL +P    NS PGC  T+ +C +   + C   HG CVG      C C 
Sbjct:  1919 IRNVVVDTKVYDLEHPAESLNSSPGCILTDEMCQSAGMVSC-GVHGRCVGDWGFFHCDCA 1977

Query:    64 PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR 123
             PG++G  C   T    F   S+I Y         +T++QL  RTR     L  L+     
Sbjct:  1978 PGYAGPACDKGTLKWAFGRDSWIHYEPRNTLSTLSTRIQLMVRTRISRSTLLSLASADGS 2037

Query:   124 EYAILEIKDSKLRFRYNL 141
              +  LE+ +      ++L
Sbjct:  2038 SFIRLEVDEGYFCVNFSL 2055

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P3P7 LOC414835 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 174 (66.3 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 42/138 (30%), Positives = 61/138 (44%)

Query:     4 ILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL 63
             I N+V  T +YDL +P    NS PGC  T+ +C +   + C   HG CVG      C C 
Sbjct:  1988 IRNVVVDTKVYDLEHPAESLNSSPGCILTDEMCQSAGMVSC-GVHGRCVGDWGFFHCDCA 2046

Query:    64 PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR 123
             PG++G  C        F   S+I Y         +T++QL  RTR     L  L+     
Sbjct:  2047 PGYAGPACDKVLPEWAFGRDSWIHYEPRNTLSTLSTRIQLMVRTRISRSTLLSLASADGS 2106

Query:   124 EYAILEIKDSKLRFRYNL 141
              +  LE+ +      ++L
Sbjct:  2107 SFIRLEVDEGYFCVNFSL 2124

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NHQ5 LOC427547 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
 Identities = 41/131 (31%), Positives = 59/131 (45%)

Query:    13 LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV 72
             +YDL +P    NS PGC  T+  C A     C   HG C+G   +  C CLPG+ G  C 
Sbjct:  1994 VYDLQSPAESLNSFPGCMLTDGSCEAMGSSSC-GIHGRCLGDWGSFGCHCLPGYYGYRCD 2052

Query:    73 TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKD 132
                   TF P S+I+Y L        T  +   RTR+    +  +  ++  E+  L++  
Sbjct:  2053 KVAREYTFGPGSHIRYQLPISVPARRTLFEAMIRTRQPDSVITSMLSRNKDEHITLQVVR 2112

Query:   133 SKLRFRYNLNN 143
               L   YNL +
Sbjct:  2113 GFLAVSYNLGD 2123

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NJK1 LOC427547 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
 Identities = 41/131 (31%), Positives = 59/131 (45%)

Query:    13 LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV 72
             +YDL +P    NS PGC  T+  C A     C   HG C+G   +  C CLPG+ G  C 
Sbjct:  1989 VYDLQSPAESLNSFPGCMLTDGSCEAMGSSSC-GIHGRCLGDWGSFGCHCLPGYYGYRCD 2047

Query:    73 TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKD 132
                   TF P S+I+Y L        T  +   RTR+    +  +  ++  E+  L++  
Sbjct:  2048 KVAREYTFGPGSHIRYQLPISVPARRTLFEAMIRTRQPDSVITSMLSRNKDEHITLQVVR 2107

Query:   133 SKLRFRYNLNN 143
               L   YNL +
Sbjct:  2108 GFLAVSYNLGD 2118

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-980526-170 cdh11 "cadherin 11, osteoblast" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 58/211 (27%), Positives = 91/211 (43%)

Query:   115 FRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDE 174
             F L D  +   +I  I+    R   ++ +L  +  D   N +          +     D 
Sbjct:   545 FSLKDNRDSTASIFVIRKGFSRMTQDIYHLPIEIND---NGVPPMSSTNTLIIRVCSCDS 601

Query:   175 KDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSR-RREAHIKYPGPDDD 233
             KD  L+           + TG+ + +   I     +V++FV   R ++E  I +   ++D
Sbjct:   602 KDTILSCNVEPFILTAGLSTGALIAILACIVILLAIVVLFVALRRQKKEPLIVFE--EED 659

Query:   234 VRENIINYDDEGGGEDDMTAFDITPLQIPIGG----PHPEMNNKIPYGLGP--MPMGVEP 287
             +RENII YDDEGGGE+D  AFDI  LQ P G     P  +M  ++ YG+ P   P+G   
Sbjct:   660 IRENIITYDDEGGGEEDTEAFDIATLQNPDGANGFLPRKDMKPELQYGMRPGLRPIGNSV 719

Query:   288 NVGIFIEEHKKRXXXXXXXXXXXXLRNYAYE 318
             +V  FI+                 ++ Y YE
Sbjct:   720 DVDDFIKTRISDADNDPTAPPYDSIQIYGYE 750

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0048840 "otolith development" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|K7GLK6 CDH11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 53/177 (29%), Positives = 83/177 (46%)

Query:   121 HNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLN--AIKDSKLRFRYNLNNLKTDEKDIW 178
             HN  + + + +D+              ++D++L    I DS +    + N L        
Sbjct:   411 HNPNFTVRDNRDNTAGVYARRGGFSRQKQDLYLLPIVISDSGIPPMSSTNTLTIKVCGCD 470

Query:   179 LNAVAVNDGQWHFV-----KTGSALFVTLLISPNQVLVLVFVVYSR-RREAHIKYPGPDD 232
             +N   ++     ++      TG+ + +   I    V+V++FV   R ++E  I +   ++
Sbjct:   471 VNGALLSCNAEAYILNAGLSTGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFE--EE 528

Query:   233 DVRENIINYDDEGGGEDDMTAFDITPLQIP--IGGPHPEMNNKIPYGLGPMPMGVEP 287
             DVRENII YDDEGGGE+D  AFDI  LQ P  I G  P  + K  Y   P P G+ P
Sbjct:   529 DVRENIITYDDEGGGEEDTEAFDIATLQNPDGINGFIPRKDIKPEYQYMPRP-GLRP 584

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O15943	CADN_DROME	No assigned EC number	0.5615	0.5073	0.0555	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	339
pfam01049	145	pfam01049, Cadherin_C, Cadherin cytoplasmic region	1e-50
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	2e-11
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	7e-08
smart00282	132	smart00282, LamG, Laminin G domain	1e-07

>gnl|CDD|216265 pfam01049, Cadherin_C, Cadherin cytoplasmic region

 Score =  164 bits (418), Expect = 1e-50
 Identities = 59/121 (48%), Positives = 71/121 (58%), Gaps = 6/121 (4%)

Query: 219 RRREAHIKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGP----HPEMNNKI 274
           RRR+        +DD+RENIINYDDEGGGE+D  A+DI+ L+ P+        P ++   
Sbjct: 1   RRRKKEPLIIDKEDDIRENIINYDDEGGGEEDTDAYDISALRNPLDPLRRDVQPLISALP 60

Query: 275 PYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGS 334
                P P     +VG FI E    AD DP APP+D L  YAYEG GS AGSLSSL S S
Sbjct: 61  RPRPPPPPDP--GDVGDFIHEKLPEADNDPTAPPYDSLLTYAYEGRGSVAGSLSSLNSSS 118

Query: 335 S 335
           S
Sbjct: 119 S 119

Cadherins are vital in cell-cell adhesion during tissue differentiation. Cadherins are linked to the cytoskeleton by catenins. Catenins bind to the cytoplasmic tail of the cadherin. Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn. Length = 145

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 31/117 (26%)

Query: 77  PVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLR 136
            V+F   SY++      P    + +   FRT    G L     Q+  ++  LE++D +L 
Sbjct: 1   GVSFSGSSYVRLPTLPAPRTRLS-ISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLV 59

Query: 137 FRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
            RY+L         + L++                            +NDGQWH V 
Sbjct: 60  LRYDLG-----SGSLVLSSK-------------------------TPLNDGQWHSVS 86

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 29/89 (32%)

Query: 105 FRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFR 164
           FRT +  G L     +   ++  LE++D +L  RY+L                       
Sbjct: 1   FRTTQPNGLLLYAGGEDGLDFLALELEDGRLVLRYDLG---------------------- 38

Query: 165 YNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                  +    + L+   +NDGQWH V 
Sbjct: 39  -------SGGSVLLLSGKKLNDGQWHRVS 60

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 29/94 (30%)

Query: 100 QLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDS 159
            +   FRT    G L     +   +Y  LE++D +L  RY+L +                
Sbjct: 1   SISFSFRTTSPNGLLLYAGSKGGGDYLALELRDGRLVLRYDLGS---------------- 44

Query: 160 KLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                            +  +   +NDGQWH V 
Sbjct: 45  -------------GPARLTSDPTPLNDGQWHRVA 65

Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
PF01049	149	Cadherin_C: Cadherin cytoplasmic region; InterPro:	100.0
KOG3514|consensus	1591		99.83
KOG4289|consensus	2531		99.82
KOG3516|consensus	1306		99.7
KOG4289|consensus	2531		99.65
KOG1219|consensus	4289		99.61
KOG3514|consensus	1591		99.55
KOG3516|consensus	1306		99.16
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	99.12
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	98.94
smart00282	135	LamG Laminin G domain.	98.8
KOG1219|consensus	4289		98.68
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	98.51
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.37
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.98
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.8
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.62
smart00181	35	EGF Epidermal growth factor-like domain.	97.51
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.23
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.19
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.98
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.03
smart00210	184	TSPN Thrombospondin N-terminal -like domains. Hepa	95.92
PHA02887	126	EGF-like protein; Provisional	95.51
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	95.18
KOG3509|consensus	964		93.78
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	93.33
PF12662	24	cEGF: Complement Clr-like EGF-like	91.4
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	87.45
KOG1214|consensus	1289		87.26
PF00354	195	Pentaxin: Pentaxin family; InterPro: IPR001759 Pen	86.96
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	85.29
KOG4260|consensus	350		84.87
smart00159	206	PTX Pentraxin / C-reactive protein / pentaxin fami	84.64
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	82.46
PF04863	56	EGF_alliinase: Alliinase EGF-like domain; InterPro	82.38
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	82.07
KOG1217|consensus	487		81.44
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	81.27
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	80.14

>PF01049 Cadherin_C: Cadherin cytoplasmic region; InterPro: IPR000233 Cadherins are transmembrane glycoproteins vital in calcium-dependent cell-cell adhesion during tissue differentiation []

Probab=100.00  E-value=7e-35  Score=246.11  Aligned_cols=111  Identities=50%  Similarity=0.801  Sum_probs=34.8

Q ss_pred             CCCCchhhcccccccCCCCCccCCCcccccccCCCCCCCC-CCccCCC-C-CCCCCCCCCCCCcHHHHHHHHHHHhcCCC
Q psy592          228 PGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPH-PEMNNKI-P-YGLGPMPMGVEPNVGIFIEEHKKRADADP  304 (339)
Q Consensus       228 ~~~~~d~reni~~Y~eEggGE~d~~~yd~~~L~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~~ad~d~  304 (339)
                      ..++||||||||+|||||||||||+||||++|++|...+. ..+.|.. + +...+.+.....+|++||++||++||.||
T Consensus        13 ~~~~ediReNii~YddEGGGEeD~~aydi~~L~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~kl~~ad~d~   92 (149)
T PF01049_consen   13 PDEEEDIRENIINYDDEGGGEEDTEAYDISALQNPSQPRSRRDILPLIRALPRYPPPPPPDSPDIGDFISQKLQEADEDP   92 (149)
T ss_dssp             -----------------TT---------GGG--------EEEEE--TTSS---------SSGGGHHHHHHHHHHHHHT-T
T ss_pred             CCcHHHHhcCceecccCcCCcCCCCccchhhhhCccccccccccccccccccccccccCCCchHHHHHHHHHHHHcCCcc
Confidence            5688999999999999999999999999999999877510 0011100 0 00011122456799999999999999999


Q ss_pred             CCCCCCcceeeeecCCCCCcccccccccCCCCCC
Q psy592          305 NAPPFDDLRNYAYEGGGSTAGSLSSLASGSSIKN  338 (339)
Q Consensus       305 ~~~p~Dsl~~y~~EG~gS~agSlssl~s~~~~~~  338 (339)
                      ++||||+|++|+|||.||+|||||||+|.+++++
T Consensus        93 ~~~p~Dsl~~Y~~EG~gS~agSLSSL~S~s~~~~  126 (149)
T PF01049_consen   93 SAPPYDSLQVYAYEGQGSSAGSLSSLESCSSDEE  126 (149)
T ss_dssp             TSSS-EEEEE----------TT------------
T ss_pred             ccccccceeeeccCCCCCcCCCcccccCCCcccc
Confidence            9999999999999999999999999999886543

Cadherins cluster to form foci of homophilic binding units. A key determinant to the strength of the binding that it is mediated by cadherins is the juxtamembrane region of the cadherin. This region induces clustering and also binds to the protein p120ctn []. The cytoplasmic region is highly conserved in sequence and has been shown experimentally to regulate the cell-cell binding function of the extracellular domain of E-cadherin, possibly through interaction with the cytoskeleton []. This domain is found upstream of the cadherin domain IPR002126 from INTERPRO.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2KOH_B 3IFQ_D 1I7X_D 1I7W_D 3L6Y_F 3L6X_B.

>KOG3514|consensus

Probab=99.83  E-value=2.2e-20  Score=189.96  Aligned_cols=166  Identities=17%  Similarity=0.391  Sum_probs=143.8

Q ss_pred             CCccceeeECCEEeecCCCccCCCC---CCCCCCCCc-ccCCCCCCCCCCCCCeeecCCCCceeeCC-CCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGLHKNS---VPGCPATEA-VCNAHSRLHCYPEHGVCVGSMHTAKCQCL-PGWSGTGCVTPT   75 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s---~~gC~~~~~-~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~-~g~~G~~Ce~~~   75 (339)
                      +||||+|++||+..|+...++..++   .++|..... .|..+    ||+|+|+|...|+.|.|+|. .+|.|+.||.+.
T Consensus       587 vGCirdl~i~G~s~di~q~ae~q~sagvkpsCs~~~~~~C~~n----PC~N~g~C~egwNrfiCDCs~T~~~G~~CerE~  662 (1591)
T KOG3514|consen  587 VGCIRDLFIDGVSTDIRQEAEAQNSAGVKPSCSLSNEKICESN----PCQNGGKCSEGWNRFICDCSGTGFEGRTCEREA  662 (1591)
T ss_pred             hheehhheecceehhhHHHhhhccccccCcccchhhccccCCC----cccCCCCccccccccccccccCcccCcccccee
Confidence            6999999999999999988877664   689987655 89999    99999999999999999999 589999999998


Q ss_pred             CCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-c
Q psy592           76 SPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-N  154 (339)
Q Consensus        76 ~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~  154 (339)
                      ..++|+|.-|+...++.....+..+++++|||..+.|+||..+.....|-+.++|..|.+.+.+++.+    +..+.. .
T Consensus       663 t~ls~nGs~~m~i~L~~~~~tq~E~v~iRF~t~r~~Gll~~Tta~~s~D~l~l~L~~g~vkl~v~ls~----~~nlfag~  738 (1591)
T KOG3514|consen  663 TALSYNGSMSMKIVLPHTMHTQAEDVSIRFRTQRAYGLLFATTARGSADTLRLELDAGQVKLFVNLSG----PENLFAGQ  738 (1591)
T ss_pred             eeEEEcCeeeEEEEecccceeecceEEEEEEecccceeEEEeccCCCCceEEEEEecceEEEEEecCC----Ccceeccc
Confidence            89999999999998886666667899999999999999999888777899999999999999999874    445554 3


Q ss_pred             ccccCccc----ccccCCcceeec
Q psy592          155 AIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       155 ~v~dG~WH----~r~~~~~~l~~~  174 (339)
                      .++|.+||    .|.+++..|.++
T Consensus       739 ~LnDN~WHtvrv~Rrg~~L~L~vD  762 (1591)
T KOG3514|consen  739 SLNDNEWHTVRVVRRGKSLLLYVD  762 (1591)
T ss_pred             cccCCcceEEEEEEcccceEEEec
Confidence            78999999    566665555554

>KOG4289|consensus

Probab=99.82  E-value=2.3e-20  Score=193.46  Aligned_cols=152  Identities=20%  Similarity=0.344  Sum_probs=131.8

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC-CCcc
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT-SPVT   79 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~-~~~~   79 (339)
                      +||||||.|+|+.+|++......+..+||+...+.|...    +|.|+|+|++.|++|.|.||.+|.|..|...+ .+-.
T Consensus      1469 vGCmrdLsvD~~~VDma~fianngt~eGC~ark~fCdsg----~C~n~g~CvnrWg~~~C~CP~~fggk~c~~~m~~pq~ 1544 (2531)
T KOG4289|consen 1469 VGCMRDLSVDGRDVDMATFIANNGTHEGCKARKNFCDSG----QCSNGGTCVNRWGGFSCECPLGFGGKGCCQGMAHPQH 1544 (2531)
T ss_pred             hhhhhhcccccccccHHHHHhhcCcccCchhhhcccCCC----ccCCCCeeecccCcEeecCccccCCcchhhccCCchh
Confidence            599999999999999999999989999999999999998    99999999999999999999999999999887 5567


Q ss_pred             ccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEecccccC
Q psy592           80 FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDS  159 (339)
Q Consensus        80 F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~~~v~dG  159 (339)
                      |.|+|.+.+.-.+......+.++|+|||+..+|+||.+...+ ..-+.|+|.+|++.+.+  +.   ....+..+.++||
T Consensus      1545 frG~sl~sw~~~~~~vSvPwylsl~FRTr~ad~vl~~~~~~~-rst~~lqld~g~l~~~v--~~---s~v~L~~~~vtdg 1618 (2531)
T KOG4289|consen 1545 FRGHSLVSWEGLPSQVSVPWYLSLMFRTRRADGVLMQAEFGG-RSTYNLQLDDGTLKYNV--GD---SSVELPAPRVTDG 1618 (2531)
T ss_pred             ccccceeeecCCCcceecceEEEEEEEeeccccEEEEEEeCC-CceEEEEEcCCEEEEEe--cC---ceEEccCccccCC
Confidence            999999998855444555789999999999999999887653 45588999999998875  33   1344444688999


Q ss_pred             ccc
Q psy592          160 KLR  162 (339)
Q Consensus       160 ~WH  162 (339)
                      +||
T Consensus      1619 ~Wh 1621 (2531)
T KOG4289|consen 1619 HWH 1621 (2531)
T ss_pred             chh
Confidence            999

>KOG3516|consensus

Probab=99.70  E-value=1.2e-16  Score=165.46  Aligned_cols=151  Identities=19%  Similarity=0.324  Sum_probs=122.9

Q ss_pred             CCccceeeECCEEeecCCCcc-CCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCC-CCCCCCCCCCCCCCc
Q psy592            1 MENILNIVTITYLYDLANPGL-HKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL-PGWSGTGCVTPTSPV   78 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~-~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~-~g~~G~~Ce~~~~~~   78 (339)
                      .||||+|.+||+++||..-+. ..++.+||.   ..|++.    +|.|||+|+..|.+|+|+|. ..|+|+.|..++ .+
T Consensus       925 ~GCIRsl~LNGv~ldLe~ra~~~~gv~~GC~---GhCss~----~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~ei-g~  996 (1306)
T KOG3516|consen  925 LGCIRSLQLNGVMLDLEYRAYGTAGVSPGCE---GHCSSY----PCLNGGHCVERYDGYTCDCSRTAYDGPFCSKEI-GV  996 (1306)
T ss_pred             eeeeeeeeecceeeeehhhhccCCcccCCCc---cccccc----cccCCCEEEEecCceeeccccCcCCCCcccccc-ce
Confidence            499999999999999944443 346789997   599998    99999999999999999999 589999999996 88


Q ss_pred             cccCcceEEEeccCCC-----------------CccccEEEEEEeecCCceEEEEEecCCCCceEEEEE-ECCEEEEEEe
Q psy592           79 TFKPQSYIKYALSFEP-----------------DKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEI-KDSKLRFRYN  140 (339)
Q Consensus        79 ~F~~~s~v~y~~~~~~-----------------~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L-~~G~l~~~~~  140 (339)
                      .|+.+++++|.+...-                 ......|.|.|+|....++|+|+++. ..+|+.+.+ .+|.+++++.
T Consensus       997 ~fe~gs~i~y~fq~~~~~a~~~~~~~~~~~~~~~~~~e~i~~sftTt~~ps~LLfvssF-~~~y~~V~v~~nGsLq~ry~ 1075 (1306)
T KOG3516|consen  997 FFERGSSIRYNFQKPMRSAVFESSRVKQKLEIEINPNEEINFSFTTTRAPSDLLFVSSF-TDDYLAVLVKDNGSLQTRYM 1075 (1306)
T ss_pred             EecCCceEEEeccchHHHhhhhhhhhhhccccccCccceEEEEEEeccCceEEEEeecc-ccceEEEEEeCCCceEEEEe
Confidence            9999999999864321                 01246799999999999999999886 366766555 6899999999


Q ss_pred             cCCCcccceeEEe--cccccCccc
Q psy592          141 LNNLKTDEKDIWL--NAIKDSKLR  162 (339)
Q Consensus       141 lG~~~~~~~~l~~--~~v~dG~WH  162 (339)
                      +|..  .+.....  .++.+|+.|
T Consensus      1076 lg~~--e~~~~~~~~kn~~~gq~H 1097 (1306)
T KOG3516|consen 1076 LGFR--EPFEYQFKDKNIALGQPH 1097 (1306)
T ss_pred             cCCc--CceEEecccccccCCCce
Confidence            9982  3344443  377789999

>KOG4289|consensus

Probab=99.65  E-value=4e-16  Score=162.54  Aligned_cols=126  Identities=19%  Similarity=0.456  Sum_probs=104.6

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC-------------------------------
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT-------------------------------   75 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~-------------------------------   75 (339)
                      .-|....+.|.+.    ||+|+|+|....++|+|.|.+||+|.+||...                               
T Consensus      1233 d~CeTeiDlCYs~----pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1233 DYCETEIDLCYSG----PCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             ccccchhHhhhcC----CCCCCCceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCc
Confidence            4577778999988    99999999999999999999999999999642                               


Q ss_pred             ---------CCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcc
Q psy592           76 ---------SPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKT  146 (339)
Q Consensus        76 ---------~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~  146 (339)
                               .+.+|.+.||+.|....  .+.++.++|+|.|.+.+|+|+|.+++ ..||+.|++.++.+++.|..|..  
T Consensus      1309 e~e~prC~v~trSFp~~sfv~frglr--qRfh~TlslsfaT~~~nGlL~ynGne-khDFvalevVd~qvqltfS~Ges-- 1383 (2531)
T KOG4289|consen 1309 EFEDPRCEVTTRSFPPESFVTFRGLR--QRFHFTLSLSFATIERNGLLLYNGNE-KHDFVALEVVDEQVQLTFSAGES-- 1383 (2531)
T ss_pred             ccCCCceEEEeeccCchheEEEeccc--cceEEEEEEEEEEeeecceEEecCCc-ccceEeeeeeeeeEEEEEecccc--
Confidence                     24568889999887532  34567788889999999999999965 68999999999999999999863  


Q ss_pred             cceeEEe---cccccCccc
Q psy592          147 DEKDIWL---NAIKDSKLR  162 (339)
Q Consensus       147 ~~~~l~~---~~v~dG~WH  162 (339)
                       ..++.-   ..++||+||
T Consensus      1384 -~t~v~p~Vp~gvsDGqWH 1401 (2531)
T KOG4289|consen 1384 -TTTVSPDVPGGVSDGQWH 1401 (2531)
T ss_pred             -cceecCCCCCCcccCcee
Confidence             233332   268999999

>KOG1219|consensus

Probab=99.61  E-value=2e-14  Score=154.72  Aligned_cols=137  Identities=20%  Similarity=0.347  Sum_probs=112.6

Q ss_pred             EeecCCCccCCCCC-----CCCCCCCcccCCCCCCCCCCCCCeeecC-CC-CceeeCCCCCCCCCCCCCCCCccccCcce
Q psy592           13 LYDLANPGLHKNSV-----PGCPATEAVCNAHSRLHCYPEHGVCVGS-MH-TAKCQCLPGWSGTGCVTPTSPVTFKPQSY   85 (339)
Q Consensus        13 ~~dl~~~~~~~~s~-----~gC~~~~~~C~~~~~~~pC~~~g~Cv~~-~~-~~~C~C~~g~~G~~Ce~~~~~~~F~~~s~   85 (339)
                      .+.+.+|.++++..     .-||...+.|...    ||..+..|+.. |+ .|+|.||+|.-| .|... .++++.|+||
T Consensus      3621 rlSfvtPrh~r~a~ClC~~G~Cp~~~~~C~~~----pcp~~~~Cvs~~~~~~~~cVcP~gr~g-~C~g~-~elS~tGnSY 3694 (4289)
T KOG1219|consen 3621 RLSFVTPRHHRTAACLCNRGFCPVETNQCAKS----PCPAGNLCVSSVHNSTYTCVCPIGRFG-FCQGD-FELSSTGNSY 3694 (4289)
T ss_pred             heeeecchhhccceeeecCCcCCcccCccccC----CCcccCcccccccccceeEeccCcccc-cCCCc-ceEeecCcee
Confidence            34566676666643     4588888999998    99999999987 44 699999999665 58877 4889999999


Q ss_pred             EEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe--cccccCccc
Q psy592           86 IKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL--NAIKDSKLR  162 (339)
Q Consensus        86 v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH  162 (339)
                      ++|+++..... +..+.|++||.+++|++||...   .++.+|.|.+|++++.++.|+++   ..+..  ..++||+||
T Consensus      3695 veyrlse~~n~-~~kl~frLkT~~sngIiM~tr~---~d~~iLkLv~G~~~l~~~cgsG~---Givg~q~~~VnDgqWH 3766 (4289)
T KOG1219|consen 3695 VEYRLSENQNT-RMKLGFRLKTLQSNGIIMYTRK---TDLAILKLVGGSPQLLADCGSGP---GIVGSQKRTVNDGQWH 3766 (4289)
T ss_pred             EEEEccccccc-ceEEEEEEEecccCcEEEEEcC---CceEEEEecCCcEEEEEecCCCC---CcccccceEeecCcee
Confidence            99999876544 3889999999999999999973   68999999999999999999874   34433  478999999

>KOG3514|consensus

Probab=99.55  E-value=2.3e-14  Score=146.68  Aligned_cols=167  Identities=21%  Similarity=0.343  Sum_probs=135.0

Q ss_pred             CccceeeECCEEeecCCCccC--CCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCC-CCCCCCCCCCCCCc
Q psy592            2 ENILNIVTITYLYDLANPGLH--KNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLP-GWSGTGCVTPTSPV   78 (339)
Q Consensus         2 GCIrnl~vn~~~~dl~~~~~~--~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~-g~~G~~Ce~~~~~~   78 (339)
                      ||.-.+-+++.+-+|......  .....+|.-....|..+    .|.|+|.|+..|+++.|+|.. .|+|+.|..+-.++
T Consensus       985 g~~~s~dl~~r~p~L~~~a~~~s~lv~~~~sgpst~c~~~----acanhG~c~q~w~~~~c~csmtS~~Gp~C~d~gtTY 1060 (1591)
T KOG3514|consen  985 GCLASLDLGGRLPDLISDALFESGLVEVGCSGPSTTCSED----ACANHGVCIQQWNGIACDCSMTSYSGPRCNDPGTTY 1060 (1591)
T ss_pred             CCcCccCccccchhHHHHhhhhccceeeeccCCCcccchh----hhhccceeeeeecceeeeccccccCCCccCCCceEE
Confidence            666667777776666555433  33457898877889888    899999999999999999996 79999999987788


Q ss_pred             cccC-cceEEEeccCCC--CccccEEEEEEeecCCceEEEEEecCC-CCceEEEEEECCEEEEEEecCCCcccceeEEe-
Q psy592           79 TFKP-QSYIKYALSFEP--DKYTTQLQLKFRTREEFGELFRLSDQH-NREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-  153 (339)
Q Consensus        79 ~F~~-~s~v~y~~~~~~--~~~~~~i~l~frT~~~~GlL~~~~~~~-~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-  153 (339)
                      .|+. ++.|.|..+...  .....++.+.|+|.+++|+|+.+.+.. ..||+.|+|..|++-+.||+|.-   ...+.. 
T Consensus      1061 iFgk~gglI~YtwPpNdRpsTr~DrlAvGFsTtq~daVLvRVdSAsglgDYlqLhI~qG~igvvfNiGt~---Diti~E~ 1137 (1591)
T KOG3514|consen 1061 IFGKSGGLITYTWPPNDRPSTRKDRLAVGFSTTQPDAVLVRVDSASGLGDYLQLHINQGKIGVVFNIGTD---DITISEH 1137 (1591)
T ss_pred             EECCCCceEEEecCCCCCCCcccceEEEEEEeccCceEEEEEeccCCCCceEEEEEeccEEEEEEeccCc---ccccccc
Confidence            8975 789999987653  334678999999999999999998765 57999999999999999999973   444443 


Q ss_pred             -cccccCccc----ccccCCcceeecC
Q psy592          154 -NAIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       154 -~~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                       ..|+||++|    .|-+-+.|++++.
T Consensus      1138 ~~ivNDgkYHVVRFtR~GGNATLQVD~ 1164 (1591)
T KOG3514|consen 1138 NAIVNDGKYHVVRFTRSGGNATLQVDS 1164 (1591)
T ss_pred             cccccCCceEEEEEEecCCceEEEecc
Confidence             378999999    6666667777765

>KOG3516|consensus

Probab=99.16  E-value=3.9e-10  Score=117.94  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=61.4

Q ss_pred             ccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCE-EEEEEecCCCcccceeEEec-ccccCccc----ccccCCcce
Q psy592           98 TTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSK-LRFRYNLNNLKTDEKDIWLN-AIKDSKLR----FRYNLNNLK  171 (339)
Q Consensus        98 ~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~-l~~~~~lG~~~~~~~~l~~~-~v~dG~WH----~r~~~~~~l  171 (339)
                      ...|+|.|||..++|++|...+.  .||+.++|..+. +.|.++.|+++. +.+|..+ .++|++||    +|..++..|
T Consensus       810 saDIsf~FrTt~~~gvflen~g~--~dfir~eL~~~~~vtf~~dvgnGp~-~~~V~s~t~~nD~qWH~V~~Ern~K~a~L  886 (1306)
T KOG3516|consen  810 SADISFFFRTTASSGVFLENHGI--NDFIRLELSSPVEVTFAFDVGNGPS-QLTVRSPTELNDNQWHQVRAERNSKEASL  886 (1306)
T ss_pred             cccEEEEEEecCCceEeeeccCC--CceEEEEEcCCCceEEEEEcCCCce-eEEEcCCcccCCCceEEEEEEeccccceE
Confidence            35699999999999999988764  799999998665 889999998753 4555555 78999999    888888888


Q ss_pred             eecC
Q psy592          172 TDEK  175 (339)
Q Consensus       172 ~~~~  175 (339)
                      ++|+
T Consensus       887 qVD~  890 (1306)
T KOG3516|consen  887 QVDG  890 (1306)
T ss_pred             EEcC
Confidence            8877

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=99.12  E-value=5.7e-10  Score=93.65  Aligned_cols=81  Identities=23%  Similarity=0.439  Sum_probs=67.9

Q ss_pred             ccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEec-cc
Q psy592           78 VTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLN-AI  156 (339)
Q Consensus        78 ~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~~-~v  156 (339)
                      +.|.+.+|+.|...... .....|+++|||.+++|+||+.+.....+|+.++|.+|++.+.++.|.   ....+... .+
T Consensus         2 ~~F~g~~~i~~~~~~~~-~~~~~i~~~frt~~~~g~l~~~~~~~~~~~~~l~l~~g~l~~~~~~g~---~~~~~~~~~~v   77 (151)
T cd00110           2 VSFSGSSYVRLPTLPAP-RTRLSISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYDLGS---GSLVLSSKTPL   77 (151)
T ss_pred             eEeCCCceEEecCCCCC-cceeEEEEEEEeCCCCeEEEEecCCCCCCEEEEEEECCEEEEEEcCCc---ccEEEEccCcc
Confidence            67999999999876543 557899999999999999999988656899999999999999999984   24555544 59


Q ss_pred             ccCccc
Q psy592          157 KDSKLR  162 (339)
Q Consensus       157 ~dG~WH  162 (339)
                      +||+||
T Consensus        78 ~dg~Wh   83 (151)
T cd00110          78 NDGQWH   83 (151)
T ss_pred             CCCCEE
Confidence            999999

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=98.94  E-value=3.9e-09  Score=87.44  Aligned_cols=68  Identities=31%  Similarity=0.484  Sum_probs=53.7

Q ss_pred             EeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-cccccCccc----ccccCCcceeecC
Q psy592          105 FRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       105 frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                      |||.+++|+|||.+.....||++|+|.+|++++++++|.+   +..+.. ..++||+||    .|..+...+++++
T Consensus         1 frT~~~~Gllly~g~~~~~dfial~L~~G~l~~~~~~G~~---~~~~~~~~~i~dg~wh~v~~~r~~~~~~L~Vd~   73 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGSKDGKDFIALELRDGRLEFRYNLGSG---PASLRSPQKINDGKWHTVSVSRNGRNGSLSVDG   73 (131)
T ss_dssp             EEESSSSEEEEEEESSTTSSEEEEEEETTEEEEEEESSSE---EEEEEESSETTSSSEEEEEEEEETTEEEEEETT
T ss_pred             CccCCCCceEEECCcCCCCCEEEEEEECCEEEEEEeCCCc---cceecCCCccCCCcceEEEEEEcCcEEEEEECC
Confidence            8999999999999987777999999999999999999985   445543 478999999    4444433444433

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>smart00282 LamG Laminin G domain

Probab=98.80  E-value=3.4e-08  Score=81.68  Aligned_cols=62  Identities=23%  Similarity=0.432  Sum_probs=52.7

Q ss_pred             ccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe--cccccCccc
Q psy592           98 TTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL--NAIKDSKLR  162 (339)
Q Consensus        98 ~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH  162 (339)
                      ..+|+|.|||.+++|+||+..+....+|+.++|.+|++.+.++.|+.   +..+..  ..++||+||
T Consensus         2 ~~~i~~~frt~~~~g~l~~~~~~~~~~~l~l~l~~g~l~~~~~~g~~---~~~~~~~~~~~~dg~WH   65 (135)
T smart00282        2 RLSISFSFRTTSPNGLLLYAGSKNGGDYLALELRDGRLVLRYDLGSG---PARLTSDPTPLNDGQWH   65 (135)
T ss_pred             ceEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCC---CEEEEECCeEeCCCCEE
Confidence            46899999999999999999875457999999999999999999874   445554  478899999

>KOG1219|consensus

Probab=98.68  E-value=1.9e-08  Score=110.13  Aligned_cols=77  Identities=22%  Similarity=0.382  Sum_probs=66.2

Q ss_pred             CCccceeeECCEEeecCCCccC-------CCCCCCCCCCCcccCCCCCCCCCCCCCeeecCC-CCceeeCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGLH-------KNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSM-HTAKCQCLPGWSGTGCV   72 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~-------~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~-~~~~C~C~~g~~G~~Ce   72 (339)
                      .||++.+++||..++|.++..+       ....+||....+.|..+    ||+|+|+|.... ++|+|.|++.|+|.+||
T Consensus      3825 ~GCldsiyLng~el~l~~k~~s~a~~~el~~l~pgC~l~~d~C~~n----pCqhgG~C~~~~~ggy~CkCpsqysG~~CE 3900 (4289)
T KOG1219|consen 3825 DGCLDSIYLNGMELPLTRKGKSVAGLMELFGLQPGCSLLTDPCNDN----PCQHGGTCISQPKGGYKCKCPSQYSGNHCE 3900 (4289)
T ss_pred             cceeeeEEEccccccccCCCchhhhhhhhhcccccccccccccccC----cccCCCEecCCCCCceEEeCcccccCcccc
Confidence            4999999999999999887643       24569999888999999    999999999985 58999999999999999


Q ss_pred             CCCCCcccc
Q psy592           73 TPTSPVTFK   81 (339)
Q Consensus        73 ~~~~~~~F~   81 (339)
                      ..+.+-.+.
T Consensus      3901 i~~epC~sn 3909 (4289)
T KOG1219|consen 3901 IDLEPCASN 3909 (4289)
T ss_pred             cccccccCC
Confidence            987555543

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=98.51  E-value=6e-07  Score=72.70  Aligned_cols=55  Identities=31%  Similarity=0.496  Sum_probs=45.9

Q ss_pred             EeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe--cccccCccc
Q psy592          105 FRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL--NAIKDSKLR  162 (339)
Q Consensus       105 frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH  162 (339)
                      |||++++|+|||.+.....+|+.++|.+|++++.+++|..   ...+..  .++++|+||
T Consensus         1 Frt~~~~g~Ll~~~~~~~~~~l~l~l~~g~l~~~~~~g~~---~~~~~~~~~~~~dg~wh   57 (128)
T PF02210_consen    1 FRTRSPNGLLLYIGSEDNGDFLSLELVDGRLVVRYNLGGS---EIVTTFSNSNLNDGQWH   57 (128)
T ss_dssp             EEESSSSEEEEEEEESTTSEEEEEEEETTEEEEEEESSSS---EEEEEECSSSSTSSSEE
T ss_pred             CccCCCCEeEEEEcCCCCCEEEEEEEECCEEEEEEEcccc---ceeeeccCcccccccee
Confidence            8999999999999987556899999999999999999942   233332  378899999

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.37  E-value=1.1e-07  Score=58.97  Aligned_cols=31  Identities=26%  Similarity=0.758  Sum_probs=27.6

Q ss_pred             cCCCCCCCCCCCCCeeecCC-CCceeeCCCCCCCCC
Q psy592           36 CNAHSRLHCYPEHGVCVGSM-HTAKCQCLPGWSGTG   70 (339)
Q Consensus        36 C~~~~~~~pC~~~g~Cv~~~-~~~~C~C~~g~~G~~   70 (339)
                      |.++    ||.|+|+|+... ++|+|.|++||+|++
T Consensus         1 C~~~----~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSN----PCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTT----SSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CCCC----cCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            4555    999999999998 899999999999964

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.98  E-value=9.7e-06  Score=51.92  Aligned_cols=35  Identities=29%  Similarity=0.868  Sum_probs=30.8

Q ss_pred             cccCC-CCCCCCCCCCCeeecCCCCceeeCCCCCC-CCCCC
Q psy592           34 AVCNA-HSRLHCYPEHGVCVGSMHTAKCQCLPGWS-GTGCV   72 (339)
Q Consensus        34 ~~C~~-~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~-G~~Ce   72 (339)
                      +.|.. .    +|.++|+|++..++|.|.|++||. |..|+
T Consensus         3 ~~C~~~~----~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        3 DECASGN----PCQNGGTCVNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             ccCcCCC----CcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence            45665 5    899999999999999999999999 99885

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.80  E-value=3.2e-05  Score=48.89  Aligned_cols=35  Identities=29%  Similarity=0.854  Sum_probs=30.5

Q ss_pred             cccCC-CCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           34 AVCNA-HSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        34 ~~C~~-~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      +.|.. .    +|.+++.|+...++|+|.|++||.|..|+
T Consensus         3 ~~C~~~~----~C~~~~~C~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           3 DECASGN----PCQNGGTCVNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             ccCCCCC----CcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence            45665 4    89999999999999999999999999885

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.62  E-value=8.3e-05  Score=46.18  Aligned_cols=29  Identities=31%  Similarity=0.844  Sum_probs=26.8

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCC-CCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGT-GCV   72 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~-~Ce   72 (339)
                      +|.+++.|+..+++|+|.|+.||.|. .|+
T Consensus         7 ~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence            89999999999999999999999998 774

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.51  E-value=0.00014  Score=45.51  Aligned_cols=28  Identities=25%  Similarity=0.766  Sum_probs=25.9

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCC-CCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSG-TGCV   72 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G-~~Ce   72 (339)
                      +|.++ +|++.+++|+|.|++||.| ..|+
T Consensus         7 ~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        7 PCSNG-TCINTPGSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence            89888 9999999999999999999 8774

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.23  E-value=0.00035  Score=43.11  Aligned_cols=26  Identities=35%  Similarity=0.992  Sum_probs=23.7

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGC   71 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~C   71 (339)
                      .|.++|+|+..  ..+|.|.+||+|+.|
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence            69999999987  678999999999987

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.19  E-value=0.00017  Score=47.41  Aligned_cols=33  Identities=33%  Similarity=0.783  Sum_probs=27.7

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ++.|...  .+.|..++.|++..++|+|.|++||.
T Consensus         2 idEC~~~--~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    2 IDECAEG--PHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             SSTTTTT--SSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             ccccCCC--CCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            3567654  35798899999999999999999996

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.98  E-value=0.00021  Score=34.86  Aligned_cols=13  Identities=62%  Similarity=1.842  Sum_probs=11.1

Q ss_pred             eeeCCCCCCCCCC
Q psy592           59 KCQCLPGWSGTGC   71 (339)
Q Consensus        59 ~C~C~~g~~G~~C   71 (339)
                      +|.|++||+|++|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            5999999999988

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.03  E-value=0.0027  Score=40.26  Aligned_cols=27  Identities=22%  Similarity=0.619  Sum_probs=21.3

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ..|..++.|+....+|+|.|.+||.|.
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccC
Confidence            368888999999999999999999874

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00210 TSPN Thrombospondin N-terminal -like domains

Probab=95.92  E-value=0.071  Score=46.58  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             cccEEEEEEeec-CCceEEEEEecCCCCceEEEEEECCEEEEEEec-CCCcccceeEEe--cccccCcccccccCCccee
Q psy592           97 YTTQLQLKFRTR-EEFGELFRLSDQHNREYAILEIKDSKLRFRYNL-NNLKTDEKDIWL--NAIKDSKLRFRYNLNNLKT  172 (339)
Q Consensus        97 ~~~~i~l~frT~-~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~l-G~~~~~~~~l~~--~~v~dG~WH~r~~~~~~l~  172 (339)
                      ....|.+.||+. ...|.||.+.+.++..++.+.+..+...+.+.. +.. .....+..  .++.||+||     .+.++
T Consensus        52 ~~fsi~~~~r~~~~~~g~L~si~~~~~~~~l~v~l~g~~~~~~~~~~~~~-g~~~~~~f~~~~l~dg~WH-----~lal~  125 (184)
T smart00210       52 EDFSLLTTFRQTPKSRGVLFAIYDAQNVRQFGLEVDGRANTLLLRYQGVD-GKQHTVSFRNLPLADGQWH-----KLALS  125 (184)
T ss_pred             CCeEEEEEEEeCCCCCeEEEEEEcCCCcEEEEEEEeCCccEEEEEECCCC-CcEEEEeecCCccccCCce-----EEEEE
Confidence            467888889987 667999999876567788888877665555543 221 11233332  367889999     55555


Q ss_pred             ecC
Q psy592          173 DEK  175 (339)
Q Consensus       173 ~~~  175 (339)
                      +.+
T Consensus       126 V~~  128 (184)
T smart00210      126 VSG  128 (184)
T ss_pred             EeC
Confidence            554

Heparin-binding and cell adhesion domain of thrombospondin

>PHA02887 EGF-like protein; Provisional

Probab=95.51  E-value=0.011  Score=47.16  Aligned_cols=30  Identities=23%  Similarity=0.631  Sum_probs=24.6

Q ss_pred             CCCCCCeeec--CCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVG--SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~--~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      -|- +|+|.-  +...+.|.|+.||+|.+|+..
T Consensus        93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v  124 (126)
T PHA02887         93 FCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV  124 (126)
T ss_pred             Eee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence            565 579965  456899999999999999864

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=95.18  E-value=0.021  Score=46.25  Aligned_cols=30  Identities=20%  Similarity=0.577  Sum_probs=25.1

Q ss_pred             CCCCCCeeec--CCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVG--SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~--~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      -|-|| +|.-  +...+.|.|..||+|.+||..
T Consensus        52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             EeECC-EEEeeccCCCceeECCCCcccccccce
Confidence            68764 9965  457899999999999999865

>KOG3509|consensus

Probab=93.78  E-value=0.051  Score=58.20  Aligned_cols=70  Identities=19%  Similarity=0.347  Sum_probs=54.2

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|||+.++++++.++...-....-...+| ...+.|...    ||...+.|.+..-...|.|+++|+|..|+..+
T Consensus       375 ~gci~~~~~~~k~l~~~~~~~~~v~~~~~-c~g~~c~~~----p~~~~g~c~p~~~~~~c~c~~g~~G~~c~d~~  444 (964)
T KOG3509|consen  375 AGCIRDLVMNLKDLRVTLQRASYVAAQGT-CLGDVCWRI----PCQHDGPCLQTLEGKQCLCPPGYTGDSCEDCM  444 (964)
T ss_pred             cceehhhhhhccccccccccccccccccc-cCCCccccc----cCCCCccccccccccceeccccccCchhhccC
Confidence            48999999999988765443322222222 234688888    99999999999999999999999999999765

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=93.33  E-value=0.044  Score=43.09  Aligned_cols=45  Identities=27%  Similarity=0.742  Sum_probs=32.6

Q ss_pred             CCCCCcccCCCCCCCCCCCCCeeecCCC-----CceeeCCC-------------CCCCCCCCCCC
Q psy592           29 CPATEAVCNAHSRLHCYPEHGVCVGSMH-----TAKCQCLP-------------GWSGTGCVTPT   75 (339)
Q Consensus        29 C~~~~~~C~~~~~~~pC~~~g~Cv~~~~-----~~~C~C~~-------------g~~G~~Ce~~~   75 (339)
                      |-.+.+.|...  .+.|..||.|+....     =|.|.|.+             .|.|+.|++.-
T Consensus         1 Cf~S~~aC~~~--Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkD   63 (103)
T PF12955_consen    1 CFSSNDACENA--TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKD   63 (103)
T ss_pred             CcCCHHHHHHh--ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccccc
Confidence            33445667644  447999999999742     38999987             57888888763

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=91.40  E-value=0.14  Score=29.34  Aligned_cols=16  Identities=38%  Similarity=1.149  Sum_probs=12.5

Q ss_pred             CceeeCCCCCC----CCCCC
Q psy592           57 TAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        57 ~~~C~C~~g~~----G~~Ce   72 (339)
                      +|+|.|++||.    |..|.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~   20 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCE   20 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccc
Confidence            68999999985    55664

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=87.45  E-value=0.61  Score=38.36  Aligned_cols=11  Identities=18%  Similarity=0.311  Sum_probs=6.4

Q ss_pred             ccCCCcccccc
Q psy592          248 EDDMTAFDITP  258 (339)
Q Consensus       248 E~d~~~yd~~~  258 (339)
                      +.|..-||-..
T Consensus        72 ~~~~g~Yd~~g   82 (130)
T PF12273_consen   72 DNDPGYYDQQG   82 (130)
T ss_pred             CCCCCCCCCCC
Confidence            55666677543

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG1214|consensus

Probab=87.26  E-value=0.49  Score=49.68  Aligned_cols=35  Identities=26%  Similarity=0.698  Sum_probs=30.9

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC--CCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT--GCV   72 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~--~Ce   72 (339)
                      +.|..+    .|...++|++..++|+|.|.+||.|.  +|-
T Consensus       828 DeC~ps----rChp~A~CyntpgsfsC~C~pGy~GDGf~CV  864 (1289)
T KOG1214|consen  828 DECSPS----RCHPAATCYNTPGSFSCRCQPGYYGDGFQCV  864 (1289)
T ss_pred             cccCcc----ccCCCceEecCCCcceeecccCccCCCceec
Confidence            788877    89999999999999999999999865  553

>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits

Probab=86.96  E-value=5  Score=35.37  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=38.3

Q ss_pred             cceEEEeccCCCCccccEEEEEEeecCC--ceEEEEEecCCC-CceEEEEEECCEEEEEEecCCCcccceeEEecccccC
Q psy592           83 QSYIKYALSFEPDKYTTQLQLKFRTREE--FGELFRLSDQHN-REYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDS  159 (339)
Q Consensus        83 ~s~v~y~~~~~~~~~~~~i~l~frT~~~--~GlL~~~~~~~~-~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~~~v~dG  159 (339)
                      ..|+++............+-+++||...  .+.||..+.... .+++.+.-..+.+.+.  +++.   ...+. ..+.+|
T Consensus        11 ~~yv~l~~~~~~pL~~fTvC~w~k~~~~~~~~tifSYat~~~~nell~~~~~~~~~~l~--i~~~---~~~~~-~~~~~~   84 (195)
T PF00354_consen   11 TDYVRLKPSVPLPLSAFTVCFWVKTDDSSNDGTIFSYATSSQDNELLLFGSSSGSLRLY--INGS---SVSFS-GPIRDG   84 (195)
T ss_dssp             SBEEEEEESS-S-BSEEEEEEEEEESGSGS-EEEEEEEETTEEEEEEEEEETTTEEEEE--ETTE---EEEEE-ECS-TS
T ss_pred             cceEEEecCCCCCcccEEEEEEEEeccCCCceEEEEEccCCCCccEEEEEeCCceEEEE--ECCe---EeEec-cccCCC
Confidence            4677776543222446777888888765  688886654322 2343333334555444  4431   12222 356789


Q ss_pred             ccc
Q psy592          160 KLR  162 (339)
Q Consensus       160 ~WH  162 (339)
                      +||
T Consensus        85 ~Wh   87 (195)
T PF00354_consen   85 QWH   87 (195)
T ss_dssp             S-E
T ss_pred             CcE
Confidence            999

Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=85.29  E-value=0.46  Score=30.05  Aligned_cols=19  Identities=32%  Similarity=0.981  Sum_probs=15.8

Q ss_pred             CeeecCCCCceeeCCCCCC
Q psy592           49 GVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        49 g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ..|++..++|+|.|++||.
T Consensus        10 h~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   10 HICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             SEEEEETTSEEEE-STTEE
T ss_pred             CCCccCCCceEeECCCCCE
Confidence            3799999999999999984

...

>KOG4260|consensus

Probab=84.87  E-value=0.62  Score=42.83  Aligned_cols=33  Identities=27%  Similarity=0.564  Sum_probs=28.3

Q ss_pred             CCCCCCCeeecCC---CCceeeCCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCVGSM---HTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        43 ~pC~~~g~Cv~~~---~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .||..+|.|..+.   ++-+|.|.+||+|+.|.+-.
T Consensus       150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg  185 (350)
T KOG4260|consen  150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCG  185 (350)
T ss_pred             CCcCCCCcccCCCCCCCCCcccccCCCCCccccccc
Confidence            4898899999874   57899999999999998764

>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family

Probab=84.64  E-value=12  Score=33.14  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=42.1

Q ss_pred             ccccC---cceEEEeccCCCCccccEEEEEEeecC--CceEEEEEecCCC-CceEEEEEECCEEEEEEecCCCcccceeE
Q psy592           78 VTFKP---QSYIKYALSFEPDKYTTQLQLKFRTRE--EFGELFRLSDQHN-REYAILEIKDSKLRFRYNLNNLKTDEKDI  151 (339)
Q Consensus        78 ~~F~~---~s~v~y~~~~~~~~~~~~i~l~frT~~--~~GlL~~~~~~~~-~~~i~L~L~~G~l~~~~~lG~~~~~~~~l  151 (339)
                      +.|..   ..|+.+............+.+++|+..  ..+.||..+.... .+++...-.+|.+.+.  +++    . .+
T Consensus         9 ~~fp~~s~~~yv~l~~~~~~~l~~fTvc~W~k~~~~~~~~~ifSy~~~~~~ne~~~~~~~~~~~~l~--i~g----~-~~   81 (206)
T smart00159        9 FVFPKESDTSYVKLKPELPKPLQAFTVCLWFYSDLSPRGYSLFSYATKGQDNELLLYKEKQGEYSLY--IGG----K-KV   81 (206)
T ss_pred             EECCCCCCCCeEEEccCCCCChhHEEEEEEEEecCCCCceEEEEEeCCCCCCeEEEEEcCCcEEEEE--EcC----e-EE
Confidence            44543   466666544332344677888888864  4567775544332 3333333344555444  333    1 22


Q ss_pred             Ee-cccccCccc
Q psy592          152 WL-NAIKDSKLR  162 (339)
Q Consensus       152 ~~-~~v~dG~WH  162 (339)
                      .. ..+.+|+||
T Consensus        82 ~~~~~~~~g~W~   93 (206)
T smart00159       82 QFPVPESDGKWH   93 (206)
T ss_pred             EecccccCCceE
Confidence            22 367789999

This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=82.46  E-value=0.82  Score=30.68  Aligned_cols=24  Identities=33%  Similarity=0.753  Sum_probs=18.3

Q ss_pred             eeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           50 VCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        50 ~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|..  ....|.|.++|+|++|+.-.
T Consensus        12 ~C~~--~~G~C~C~~~~~G~~C~~C~   35 (49)
T PF00053_consen   12 TCDP--STGQCVCKPGTTGPRCDQCK   35 (49)
T ss_dssp             SEEE--TCEEESBSTTEESTTS-EE-
T ss_pred             cccC--CCCEEeccccccCCcCcCCC
Confidence            5665  55689999999999999764

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=82.38  E-value=0.4  Score=33.03  Aligned_cols=32  Identities=22%  Similarity=0.456  Sum_probs=18.6

Q ss_pred             CCCCCCeeecC----CCCceeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGS----MHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~----~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      +|..||+...+    .+...|.|..-|+|+.|++.+
T Consensus        18 ~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~~   53 (56)
T PF04863_consen   18 SCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTLI   53 (56)
T ss_dssp             --TTSEE--TTS-EETTEE--EE-TTEESTTS-EE-
T ss_pred             CcCCCCeeeeccccccCCccccccCCcCCCCcccCC
Confidence            78888988754    345889999999999998654

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=82.07  E-value=1.3  Score=39.61  Aligned_cols=37  Identities=22%  Similarity=0.536  Sum_probs=27.2

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSG   68 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G   68 (339)
                      .-|. ..+.|...  .++|.  ..|....++|.|.|++||+.
T Consensus       182 ~~C~-~~~~C~~~--~~~c~--~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         182 KICV-VPDLCATL--SHVCQ--QVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             ccCc-CchhhcCC--CCCcc--ceEEcCCCCEEeECCCCccC
Confidence            4575 34677643  23675  47999999999999999974

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG1217|consensus

Probab=81.44  E-value=1.4  Score=43.25  Aligned_cols=36  Identities=31%  Similarity=0.766  Sum_probs=30.3

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC   71 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~C   71 (339)
                      .+.|...  . +|.++++|+...+.|.|.|++||+|..|
T Consensus       271 ~~~C~~~--~-~c~~~~~C~~~~~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  271 VDSCALI--A-SCPNGGTCVNVPGSYRCTCPPGFTGRLC  306 (487)
T ss_pred             ccccCCC--C-ccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence            3556554  1 3999999999999999999999999998

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=81.27  E-value=4.2  Score=33.91  Aligned_cols=51  Identities=12%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchhhcccccccCCCCCcc
Q psy592          196 SALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEGGGED  249 (339)
Q Consensus       196 ~~il~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~d~reni~~Y~eEggGE~  249 (339)
                      +.||+.|++++ +++++++.++.+||++.. -...++|++ =|=.|+|..-+|-
T Consensus        32 ~tILiaIvVli-iiiivli~lcssRKkKaa-AAi~eediQ-finpyqDqqw~~v   82 (189)
T PF05568_consen   32 YTILIAIVVLI-IIIIVLIYLCSSRKKKAA-AAIEEEDIQ-FINPYQDQQWAGV   82 (189)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhhHHHH-hhhhhhccc-ccCcccchhhccC
Confidence            56676666651 233444445555554321 123344553 2334666433333

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=80.14  E-value=0.77  Score=29.13  Aligned_cols=24  Identities=25%  Similarity=0.649  Sum_probs=17.7

Q ss_pred             CCCCCCeeecCC-CCceeeCCCCCC
Q psy592           44 CYPEHGVCVGSM-HTAKCQCLPGWS   67 (339)
Q Consensus        44 pC~~~g~Cv~~~-~~~~C~C~~g~~   67 (339)
                      +|..++.|+... +.+.|.|.+||.
T Consensus         6 ~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    6 KCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             ---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             cCCCCcccEEcCCCCEEEEeeCCcc
Confidence            888899999987 679999999984

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
1i7w_B	151	E-cadherin, epithelial-cadherin; cell adhesion, be	8e-35
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-24
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	6e-23
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	7e-19
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	8e-16
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-06
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	2e-21
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	7e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	8e-17
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	4e-11
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	3e-09
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-15
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	4e-14
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	1e-13
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	3e-13
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	4e-13
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	1e-12
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	2e-10
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	1e-11
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	3e-11
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	1e-10
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	4e-04
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	8e-10
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	1e-09
3v64_A	191	Low-density lipoprotein receptor-related protein;	7e-09
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	1e-08
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	2e-08
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	2e-07
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	2e-04

>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C* Length = 151

 Score =  123 bits (310), Expect = 8e-35
 Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 8/123 (6%)

Query: 220 RREAHIKYP--GPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYG 277
           RR   +K P   PDDD R+N+  YD+EGGGE+D   FD++ L   +        N +   
Sbjct: 1   RRRTVVKEPLLPPDDDTRDNVYYYDEEGGGEED-QDFDLSQLHRGLDARPEVTRNDVAPT 59

Query: 278 LGPMPMGVEP-----NVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLAS 332
           L  +P           +G FI+E+ K AD+DP APP+D L  + YEG GS A SLSSL S
Sbjct: 60  LMSVPQYRPRPANPDEIGNFIDENLKAADSDPTAPPYDSLLVFDYEGSGSEAASLSSLNS 119

Query: 333 GSS 335
             S
Sbjct: 120 SES 122

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  104 bits (260), Expect = 1e-24
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 173 DEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDD 232
           + K I      V       +       + LLI    + +L+ +   R++        P+D
Sbjct: 688 EGKAIKCQEKLVGGFDLPIILVILGSVLALLI----LFLLLLLFLKRKKVVKEPLLLPED 743

Query: 233 DVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMP-----MGVEP 287
           D R+NI  Y +EGGGE+D   +D++ L   +      M N +   L P P          
Sbjct: 744 DTRDNIFYYGEEGGGEEDQD-YDLSQLHRGLDSRPDIMRNDVVPTLMPAPHYRPRPSNPD 802

Query: 288 NVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
            +G FI+E+   AD DP APP+D L  + YEG GS A SLSSL S +S
Sbjct: 803 EIGNFIDENLDAADNDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSNS 850

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 99.1 bits (246), Expect = 6e-23
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 40/188 (21%)

Query: 13   LYDLANPGLHKNSV--PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQC-LPGWSGT 69
            L DL +  L  N     GC      C   S  +     GVC+       C C +  +SG 
Sbjct: 995  LPDLISDALFCNGQIERGCEGPSTTCQEDSCSN----QGVCLQQWDGFSCDCSMTSFSGP 1050

Query: 70   GCVTPTSPVTFKPQ---SYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EY 125
             C  P +   F         K+  +  P     +L + F T ++   L R+       +Y
Sbjct: 1051 LCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDY 1110

Query: 126  AILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVN 185
              L I   K+  ++N+                              TD+  I  +   +N
Sbjct: 1111 LELHIHQGKIGVKFNVG-----------------------------TDDIAIEESNAIIN 1141

Query: 186  DGQWHFVK 193
            DG++H V+
Sbjct: 1142 DGKYHVVR 1149

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 86.8 bits (214), Expect = 7e-19
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 39/186 (20%)

Query: 13  LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPE----HGVCVGSMHTAKCQC-LPGWS 67
             D+      +++    P+    C+  +   C       +G+C    +   C C   G+ 
Sbjct: 595 SKDIRQMAEVQSTAGVKPS----CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 650

Query: 68  GTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAI 127
           G  C    + +++    ++K  L          + L+FR++  +G L   + + + +   
Sbjct: 651 GRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLR 710

Query: 128 LEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDG 187
           LE+   +++   NL                                  +       +ND 
Sbjct: 711 LELDAGRVKLTVNLGK------------------------------GPETLFAGYNLNDN 740

Query: 188 QWHFVK 193
           +WH V+
Sbjct: 741 EWHTVR 746

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 77.6 bits (190), Expect = 8e-16
 Identities = 37/189 (19%), Positives = 53/189 (28%), Gaps = 38/189 (20%)

Query: 13  LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYP----EHGVCVGSMHTAKCQC-LPGWS 67
           L    + G  K      P +       +            GVC      A C C   G+ 
Sbjct: 163 LALPVDSGEVKLD-DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221

Query: 68  GTGCVTPTSP--VTFKPQSYIKYALSFEP-DKYTTQLQLKFRTREEFGELFRLSDQHNRE 124
           G  C         TFK   Y  Y LS  P    + ++ L F+T +  G +       +  
Sbjct: 222 GKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSAD-- 279

Query: 125 YAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAV 184
           Y  L +K+  +    NL +                              E  +       
Sbjct: 280 YVNLALKNGAVSLVINLGS---------------------------GAFEALVEPVNGKF 312

Query: 185 NDGQWHFVK 193
           ND  WH VK
Sbjct: 313 NDNAWHDVK 321

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 18/152 (11%)

Query: 43  HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFK-PQSYIKYALSFEPDKYTTQL 101
           +      +   +        + G     C    +             +L     K T  +
Sbjct: 387 NNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSI 446

Query: 102 QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKL 161
              FRT E  G +     +   +      +  K+ F               +  + D  L
Sbjct: 447 SFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDF-------------FAI-EMLDGHL 492

Query: 162 RFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
               ++ +       I      VNDG+W+ V 
Sbjct: 493 YLLLDMGS---GTIKIKALQKKVNDGEWYHVD 521

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 78  VTF--KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKL 135
           + F      + ++          +++  + +TR   G +    D+   ++  L +     
Sbjct: 1   LEFPGAEGQWTRFPK--WNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELIL----- 53

Query: 136 RFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                                +  +L+  +++      E    L    VNDG WH V+
Sbjct: 54  --------------------TRGGRLQLSFSIFC---AEPATLLTDTPVNDGAWHNVR 88

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 34/152 (22%)

Query: 43  HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF-KPQSYIKYALSFEPDKYTTQL 101
                +     +     C+    +     +    PVTF    SY+  A + +       L
Sbjct: 807 FNGMAYIDLCKNGDIDYCELNARFGFRNIIA--DPVTFKTKSSYVALA-TLQAYTSMH-L 862

Query: 102 QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKL 161
             +F+T    G +   S   N ++ ++E+    L + ++L N               + +
Sbjct: 863 FFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLGN-------------GANLI 908

Query: 162 RFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
           +                 +   +ND QWH V 
Sbjct: 909 KGS---------------SNKPLNDNQWHNVM 925

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 93.1 bits (231), Expect = 2e-21
 Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 40/188 (21%)

Query: 13  LYDLANPGLHKNSV--PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQC-LPGWSGT 69
           L DL +  L  N     GC      C   S  +     GVC+       C C +  +SG 
Sbjct: 163 LPDLISDALFCNGQIERGCEGPSTTCQEDSCSN----QGVCLQQWDGFSCDCSMTSFSGP 218

Query: 70  GCVTPTSPVTFKP---QSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EY 125
            C  P +   F     Q   K+  +  P     +L + F T ++   L R+       +Y
Sbjct: 219 LCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDY 278

Query: 126 AILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVN 185
             L I   K+  ++N+                              TD+  I  +   +N
Sbjct: 279 LELHIHQGKIGVKFNVG-----------------------------TDDIAIEESNAIIN 309

Query: 186 DGQWHFVK 193
           DG++H V+
Sbjct: 310 DGKYHVVR 317

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 32/118 (27%)

Query: 77  PVTFK-PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKL 135
           PVTFK   SY+  A        +  L  +F+T    G +   +     ++ ++E+    L
Sbjct: 7   PVTFKTKSSYVALATL--QAYTSMHLFFQFKTTSLDGLIL-YNSGDGNDFIVVELVKGYL 63

Query: 136 RFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
            + ++L N                                    +   +ND QWH V 
Sbjct: 64  HYVFDLGN----------------------------GANLIKGSSNKPLNDNQWHNVM 93

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 80.5 bits (198), Expect = 8e-17
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 30/150 (20%)

Query: 44  CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQL 103
            +    + + +    +  C               + F  + Y   +         + +  
Sbjct: 172 YFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMF 231

Query: 104 KFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRF 163
           KFRT      L  L+ +  +++  +E+ D  ++  Y+L +  T                 
Sbjct: 232 KFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMT----------------- 274

Query: 164 RYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                ++ +++          NDG+W    
Sbjct: 275 -----SVVSNQN--------HNDGKWKAFT 291

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 40/157 (25%)

Query: 60  CQCLPGWSGTGCV---TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFR 116
               P + G            V+F    +++ A         T++ L F TR E G +  
Sbjct: 369 ILSSPDYVGVTKGCSLENVYTVSFPKPGFVELA--AVSIDVGTEINLSFSTRNESGIIL- 425

Query: 117 LSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKD 176
           L     + Y  + +   +L    +       +  I     +                   
Sbjct: 426 LGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNR------------------- 466

Query: 177 IWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLV 213
                   +DG+ H         V +  +     V +
Sbjct: 467 -------FHDGREH--------SVHVERTRGIFTVQI 488

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 30/117 (25%)

Query: 77  PVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLR 136
            V+        Y    +   Y   + +  +T      LF L      ++  +E++  K+ 
Sbjct: 12  SVSSGGDCVRTYRPEIKKGSYNN-IVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVS 70

Query: 137 FRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
           F +++ +                                 +    + ++D  W+ ++
Sbjct: 71  FLWDVGS-----------------------------GVGRVEYPDLTIDDSYWYRIE 98

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 33/160 (20%)

Query: 38  AHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF-KPQSYIKY--ALSFEP 94
             S    +  H       H+         +        +   F K    I Y    +  P
Sbjct: 1   GSSLGAHHIHHFHGSSKHHSVPIAIYRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRP 60

Query: 95  DKYTTQLQLKFRTREEFGELFRLSDQHNR-EYAILEIKDSKLRFRYNLNNLKTDEKDIWL 153
                +L + F T ++   L R+       +Y  L I   K+  ++N+            
Sbjct: 61  STRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVG----------- 109

Query: 154 NAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                             TD+  I  +   +NDG++H V+
Sbjct: 110 ------------------TDDIAIEESNAIINDGKYHVVR 131

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 68.7 bits (168), Expect = 4e-14
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 30/116 (25%)

Query: 78  VTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRF 137
           +++    ++K  L          + L+FR++  +G L   + + + +   LE+   +++ 
Sbjct: 8   LSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKL 67

Query: 138 RYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
             NL                            L             +ND +WH V+
Sbjct: 68  TVNLGKGPE----------------------TLFAGYN--------LNDNEWHTVR 93

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 32/122 (26%)

Query: 75  TSPVTFKPQSYIKY--ALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EYAILEIK 131
           ++ +  K    I Y    +  P     +L + F T ++   L R+       +Y  L I 
Sbjct: 5   STYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 64

Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
             K+  ++N+                              TD+  I  +   +NDG++H 
Sbjct: 65  QGKIGVKFNVG-----------------------------TDDIAIEESNAIINDGKYHV 95

Query: 192 VK 193
           V+
Sbjct: 96  VR 97

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 38/138 (27%)

Query: 64  PGWSGTGCVTPTSP--------VTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELF 115
           P      C   T+P              S++   L     +   Q+QL  RT    G ++
Sbjct: 2   PLAQPELCAVDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIY 61

Query: 116 RLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEK 175
            ++ Q+  +YA L++++ +L F ++L   +T                       +     
Sbjct: 62  YVAHQNQMDYATLQLQEGRLHFMFDLGKGRT----------------------KVSHPAL 99

Query: 176 DIWLNAVAVNDGQWHFVK 193
                   ++DG+WH VK
Sbjct: 100 --------LSDGKWHTVK 109

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 36/167 (21%)

Query: 48  HGVCVGSMHTAKCQCLP-GWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFR 106
             + V      K + L         V       F+   Y          +   Q+ L+FR
Sbjct: 170 GEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFR 229

Query: 107 TREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYN 166
           T  + G L  +S     +   LEI D K+ F  N    +         A           
Sbjct: 230 TTSKNGVLLGISSAKV-DAIGLEIVDGKVLFHVNNGAGRITATYQPRAARA--------- 279

Query: 167 LNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLV 213
                            + DG+WH         +    S +++++ V
Sbjct: 280 -----------------LCDGKWH--------TLQAHKSKHRIVLTV 301

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 36/146 (24%)

Query: 68  GTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAI 127
           GT      S   F    + K    F+       ++ +FRT    G L  +S Q   +   
Sbjct: 204 GTCFANAESGTYFDGTGFAKAVGGFKVGLDLL-VEFEFRTTRPTGVLLGVSSQKM-DGMG 261

Query: 128 LEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDG 187
           +E+ D KL F  +    +                                      + +G
Sbjct: 262 IEMIDEKLMFHVDNGAGRFTAIYDAEIPGH--------------------------MCNG 295

Query: 188 QWHFVKTGSALFVTLLISPNQVLVLV 213
           QWH         VT     N++ ++V
Sbjct: 296 QWH--------KVTAKKIKNRLELVV 313

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 38/145 (26%)

Query: 57  TAKCQCLPGWSGTGCVTPTSPVT--------FKPQSYIKYALSFEPDKYTTQLQLKFRTR 108
            A    +P      CV  + P              S+I  A      K    ++L+ RT 
Sbjct: 9   PAFPFPVPTMVHGPCVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTE 68

Query: 109 EEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLN 168
            E G LF ++  ++ ++A +++++    F Y+L +  T                      
Sbjct: 69  AESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDT---------------------- 106

Query: 169 NLKTDEKDIWLNAVAVNDGQWHFVK 193
           +     K        +NDGQWH +K
Sbjct: 107 STMIPTK--------INDGQWHKIK 123

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 62.5 bits (151), Expect = 1e-11
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 32/122 (26%)

Query: 75  TSPVTFKPQSYIKYAL--SFEPDKYTTQLQLKFRTREEFGELFRL-SDQHNREYAILEIK 131
           T+ +  K    I Y    +  P     +L + F T ++   L R+ S     +Y  L I 
Sbjct: 11  TTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 70

Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
             K+  ++N+                              TD+  I  +   +NDG++H 
Sbjct: 71  QGKIGVKFNVG-----------------------------TDDIAIEESNAIINDGKYHV 101

Query: 192 VK 193
           V+
Sbjct: 102 VR 103

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 33/114 (28%)

Query: 80  FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRY 139
            +P + + + L        T    + RT +  G +F        ++ +L ++D +   + 
Sbjct: 12  QEPIAVMTFDL---TKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQL 68

Query: 140 NLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
           + +  +                        +    +        ++DG+WH V+
Sbjct: 69  HNHWAQL----------------------TVGAGPR--------LDDGRWHQVE 92

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 61.4 bits (148), Expect = 1e-10
 Identities = 18/158 (11%), Positives = 36/158 (22%), Gaps = 36/158 (22%)

Query: 36  CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPD 95
           C+    L    +   C          C+P        +      F     I+        
Sbjct: 6   CDGRGGLKLSQDMDTCEDI-----LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFK-RLQ 59

Query: 96  KYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNA 155
                 +  FRT +  G L       +  + +L ++  +L  +   N +           
Sbjct: 60  PTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGR--------- 110

Query: 156 IKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
                           +           +N G W  + 
Sbjct: 111 -------------VTSSGPV--------INHGMWQTIS 127

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 23/140 (16%)

Query: 54  SMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGE 113
                + QC            +    +                +  ++    R   + G 
Sbjct: 206 VKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGV 265

Query: 114 LFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTD 173
           LF L     R    L +          L                         L  L  +
Sbjct: 266 LFALWAPDLRAVP-LSVALVDYHSTKKLKK----------------------QLVVLAVE 302

Query: 174 EKDIWLNAVAVNDGQWHFVK 193
              + L  + V DGQ H V 
Sbjct: 303 HTALALMEIKVCDGQEHVVT 322

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 31/125 (24%)

Query: 70  GCVTPTSPVTFKPQSYIKYALSFEP-DKYTTQLQLKFRTREEFGELFRLSDQHNREYAIL 128
           G        TFK   Y  Y LS  P    + ++ L F+T +  G +       +  Y  L
Sbjct: 1   GS-KEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSAD--YVNL 57

Query: 129 EIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQ 188
            +K+  +    NL +                              E  +       ND  
Sbjct: 58  ALKNGAVSLVINLGS---------------------------GAFEALVEPVNGKFNDNA 90

Query: 189 WHFVK 193
           WH VK
Sbjct: 91  WHDVK 95

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 33/115 (28%)

Query: 79  TFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFR 138
             +P + + + L        T    + RT +  G +F        ++ +L ++D +   +
Sbjct: 23  GQEPIAVMTFDL---TKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQ 79

Query: 139 YNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
            + +  +                        +    +        ++DG+WH V+
Sbjct: 80  LHNHWAQL----------------------TVGAGPR--------LDDGRWHQVE 104

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 42/130 (32%)

Query: 76  SPVTFKPQSYIKYALSFEPD-----------KYTTQLQLKFRTREEFGELFRLSDQHNR- 123
             + F  ++YI+Y  +                 +   +L  RT    G +  +     R 
Sbjct: 3   ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERA 62

Query: 124 EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVA 183
           +Y  L I D  L+  Y+L +                          L++  K        
Sbjct: 63  DYMALAIVDGHLQLSYDLGSQPV----------------------VLRSTVK-------- 92

Query: 184 VNDGQWHFVK 193
           VN  +W  ++
Sbjct: 93  VNTNRWLRIR 102

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 45/138 (32%)

Query: 71  CVTPTSPVTFKPQSYIKY----ALSFEPDKY----------TTQLQLKFRTREEFGELFR 116
                  + F  ++Y++Y      S +   Y          +   +L  +T    G +  
Sbjct: 8   AAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILW 67

Query: 117 LSDQHNR-EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEK 175
                 R +Y  L I D  ++  Y+L +                          L++   
Sbjct: 68  SGKGLERSDYIALAIVDGFVQMMYDLGSKPV----------------------VLRSTVP 105

Query: 176 DIWLNAVAVNDGQWHFVK 193
                   +N   W  +K
Sbjct: 106 --------INTNHWTHIK 115

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 35/129 (27%)

Query: 70  GCVTPTSPVTFKPQSYIKYALSFEPD---KYTTQLQLKFRTREEFGELFRLSDQHNRE-- 124
              +      F   SY++       +        L++ F  R   G L     + + +  
Sbjct: 4   NAGSRPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGD 63

Query: 125 YAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAV 184
           +  L + +  L FRY+L                            +++ E         +
Sbjct: 64  FVSLALHNRHLEFRYDLGKGAA----------------------IIRSKEP--------I 93

Query: 185 NDGQWHFVK 193
             G W  V 
Sbjct: 94  ALGTWVRVF 102

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 38/122 (31%)

Query: 80  FKPQSYIKY---ALSFEPDKYTTQLQLKFRTREEFGELF-----RLSDQHNREYAILEIK 131
           F    ++ +     S    +    ++L+ RT    G L             +++  L ++
Sbjct: 10  FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69

Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
           D  L FRY L + +                        L +++         +NDG+WH 
Sbjct: 70  DGHLVFRYQLGSGEA----------------------RLVSEDP--------INDGEWHR 99

Query: 192 VK 193
           V 
Sbjct: 100 VT 101

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 29  CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQS 84
           C   +  C  +    C   HG C        C C   W+G  C   T   T    +
Sbjct: 521 CECDDFSCVRYKGEMCSG-HGQCS----CGDCLCDSDWTGYYCNCTTRTDTCMSSN 571

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
1i7w_B	151	E-cadherin, epithelial-cadherin; cell adhesion, be	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	99.97
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.91
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.88
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.87
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.55
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.49
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.46
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.45
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.42
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.41
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.4
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.38
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.38
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.34
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.33
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.33
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.29
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.28
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.27
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.26
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.23
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.22
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.16
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.96
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	98.96
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.73
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.44
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.43
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.43
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.42
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.37
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.29
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.18
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.99
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.93
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.91
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.83
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.66
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.64
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.63
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.62
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.54
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.53
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.5
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.47
2vh0_B	134	Activated factor XA light chain; serine protease,	97.43
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.42
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	97.41
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.33
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.29
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.21
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.12
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.11
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	97.07
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	97.04
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.94
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	96.92
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	96.91
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	96.76
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.67
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	96.59
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.2
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	96.19
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	95.99
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.98
2bou_A	143	EGF-like module containing mucin-like hormone rece	95.83
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	95.6
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	95.59
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.49
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	95.46
2bou_A	143	EGF-like module containing mucin-like hormone rece	95.15
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.12
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	94.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.62
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.54
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	94.47
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	94.34
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	94.24
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	94.2
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.19
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	94.02
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	94.0
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	93.91
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	93.85
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	93.75
2vh0_B	134	Activated factor XA light chain; serine protease,	93.56
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	93.52
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	93.51
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	93.47
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	93.33
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	93.2
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	93.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	92.57
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	92.46
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	92.21
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	92.02
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	91.65
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	91.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	91.51
2erf_A	209	Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug	91.15
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	91.14
2uur_A	245	Collagen alpha-1(IX) chain; glycoprotein, hydroxyl	89.77
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	89.56
1aut_L	114	Activated protein C; serine proteinase, plasma cal	89.36
3v65_B	386	Low-density lipoprotein receptor-related protein;	89.31
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	89.01
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	88.42
1szb_A	170	Mannose binding lectin-associated serine protease-	88.13
1za4_A	251	Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel	87.85
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	87.56
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	87.55
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	87.34
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	87.15
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.6
3pvn_A	206	C-reactive protein; pentraxin family, immune syste	86.25
3kqr_A	204	Serum amyloid P-component; glycoprotein, disulfide	85.34
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	84.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	84.21
3flp_A	217	SAP-like pentraxin; physiological doubly-stacked h	83.48
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	83.09
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	83.05
1nzi_A	159	Complement C1S component; calcium, innate immunity	82.27
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	82.15
2v73_A	191	CBM40, putative EXO-alpha-sialidase; carbohydrate-	80.65

>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*

Probab=100.00  E-value=7.7e-37  Score=254.21  Aligned_cols=113  Identities=39%  Similarity=0.615  Sum_probs=34.0

Q ss_pred             cCCCCCCchhhcccccccCCCCCccCCCcccccccCCCCCCCCC----CccCCCC-CCCCCCCCCCCCcHHHHHHHHHHH
Q psy592          225 IKYPGPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHP----EMNNKIP-YGLGPMPMGVEPNVGIFIEEHKKR  299 (339)
Q Consensus       225 ~~~~~~~~d~reni~~Y~eEggGE~d~~~yd~~~L~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~  299 (339)
                      ..+..++||||||||+|||||||||||+ |||++||+|......    .+.|... ..+.+..+..+.+|++||.+||++
T Consensus         8 ~~l~~~~dDiReNIi~YddEGGGEeD~~-yDi~~L~~p~~~~~~~~r~d~~P~~~~~~~~~~~~~~~~~v~~fi~~kl~~   86 (151)
T 1i7w_B            8 EPLLPPDDDTRDNVYYYDEEGGGEEDQD-FDLSQLHRGLDARPEVTRNDVAPTLMSVPQYRPRPANPDEIGNFIDENLKA   86 (151)
T ss_dssp             -----------------------------------------------------------------------------CHH
T ss_pred             ccCCcchhhhhhhheecccccCccccCC-cCHHHHcCcccccccccccCcCcccccccccCCCCCCcchHHHHHHHHHHH
Confidence            3445678999999999999999999999 999999998764211    1222110 001111111345899999999999


Q ss_pred             hcCCCCCCCCCcceeeeecCCCCCcccccccccCCCCCC
Q psy592          300 ADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSSIKN  338 (339)
Q Consensus       300 ad~d~~~~p~Dsl~~y~~EG~gS~agSlssl~s~~~~~~  338 (339)
                      ||+||++||||+||+|+|||.||+|||||||+|++++++
T Consensus        87 ad~D~~~~p~D~l~~Y~yEG~gS~agSLSsl~S~~~~~d  125 (151)
T 1i7w_B           87 ADSDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDQD  125 (151)
T ss_dssp             HHHCTTSSCCCCCCCCCCCCCCCCCTTCCCC--------
T ss_pred             ccCCCCcCCccceeeeeecCCCCccCccccccccCcccC
Confidence            999999999999999999999999999999999877543

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=99.97  E-value=1.3e-32  Score=291.07  Aligned_cols=160  Identities=29%  Similarity=0.441  Sum_probs=10.1

Q ss_pred             eEEEccccCC-Ccccc----ccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCCchhhcccccccCCCCC
Q psy592          176 DIWLNAVAVN-DGQWH----FVKTG--SALFVTLLISPNQVLVLVFVVYSRRRE-AHIKYPGPDDDVRENIINYDDEGGG  247 (339)
Q Consensus       176 ~v~v~~~~~~-~~~~~----~~~~g--~~il~~~~~l~~l~~~l~~~~~~~~~~-~~~~~~~~~~d~reni~~Y~eEggG  247 (339)
                      +|+||+|..+ +.|..    .++.+  +|||+|+++|  |+++|++++++|||+ +++.+..++||+||||+.|||||||
T Consensus       681 ~V~V~d~nd~~~~~~~~~~~~l~~~aii~il~~~~~l--l~~~ll~~~~~~~~~~~k~~~~~~~~d~r~ni~~y~~Eggg  758 (880)
T 1q55_A          681 NATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLAL--LILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGG  758 (880)
T ss_dssp             CEEECSCSSSCCCCC-----------------------------------------------------------------
T ss_pred             EEEEEecCCCccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHhhhhhcccccCCCCCCccccccceEEecCcCCc
Confidence            7889988766 55532    12223  6788888887  555555555544432 2233345789999999999999999


Q ss_pred             ccCCCcccccccCCCCCCCCCC----ccCCC-CCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCCCCCcceeeeecCCCC
Q psy592          248 EDDMTAFDITPLQIPIGGPHPE----MNNKI-PYGLGPMPMGVEPNVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGS  322 (339)
Q Consensus       248 E~d~~~yd~~~L~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ad~d~~~~p~Dsl~~y~~EG~gS  322 (339)
                      ||||+ |||++|++|.......    ++|.. ..++++..+..+.++++||.+||++||+||++||||+||+|+|||.||
T Consensus       759 eed~~-~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~~~ad~d~~~pp~D~l~~y~yEG~gS  837 (880)
T 1q55_A          759 EEDQD-YDLSQLHRGLDSRPDIMRNDVVPTLMPAPHYRPRPSNPDEIGNFIDENLDAADNDPTAPPYDSLLVFDYEGSGS  837 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc-cCcccccCCcccCCcccccCCCCcccccccccccCCCchHHHHHHHHHHHhhccCCCCCcccceeeecccCCCC
Confidence            99999 9999999876532111    11210 000111111234489999999999999999999999999999999999


Q ss_pred             CcccccccccCCCCCC
Q psy592          323 TAGSLSSLASGSSIKN  338 (339)
Q Consensus       323 ~agSlssl~s~~~~~~  338 (339)
                      .|||||||+|+++|+|
T Consensus       838 ~agSlssl~s~~~~~d  853 (880)
T 1q55_A          838 EAASLSSLNSSNSNDE  853 (880)
T ss_dssp             ----------------
T ss_pred             cCCCchhcccCCCccc
Confidence            9999999999887554

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.91  E-value=2.2e-24  Score=210.17  Aligned_cols=155  Identities=21%  Similarity=0.366  Sum_probs=129.4

Q ss_pred             CCccceeeECCEEeecCCCcc--CCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCC-CCCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGL--HKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLP-GWSGTGCVTPTSP   77 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~--~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~-g~~G~~Ce~~~~~   77 (339)
                      +||||+|.+|++.+|+..+..  ..++..+|+...+.|..+    ||.|+|+|++.|++|+|.|+. +|+|+.|+.....
T Consensus       151 ~GCi~~l~ing~~~dl~~~~~~~~~~v~~gC~~~~~~C~~~----pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~~~~  226 (410)
T 3asi_A          151 QGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQED----SCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT  226 (410)
T ss_dssp             CEEEEEEESSSCCCCTTTTCSEEESSEEESCCCCSSCCCTT----SSSTTCEEEECSSSEEEECTTTSEESTTSCEECCE
T ss_pred             hhheeheeeCCcccCchhhhhccCCccCCCCCCCCCCcccc----cCCCCCEecCCCCCceEeccCCcccCCCCCCCccc
Confidence            599999999999999977654  235678998777899998    999999999999999999996 9999999988767


Q ss_pred             cccc-CcceEEEeccCCC--CccccEEEEEEeecCCceEEEEEecCC-CCceEEEEEECCEEEEEEecCCCcccceeEEe
Q psy592           78 VTFK-PQSYIKYALSFEP--DKYTTQLQLKFRTREEFGELFRLSDQH-NREYAILEIKDSKLRFRYNLNNLKTDEKDIWL  153 (339)
Q Consensus        78 ~~F~-~~s~v~y~~~~~~--~~~~~~i~l~frT~~~~GlL~~~~~~~-~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~  153 (339)
                      +.|. +++|+.|.++...  ......++|.|||++++|+|||..... ..+|+.|+|.+|++++.+++|+.   ...+..
T Consensus       227 ~~f~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~l~~~~~~g~~---~~~~~~  303 (410)
T 3asi_A          227 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD---DIAIEE  303 (410)
T ss_dssp             EEEEEEEEEEEEECCTTCCCCBSEEEEEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSS---CEEEEC
T ss_pred             ccccCCCceEEEecCCCCCccceeeEEEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCEEEEEEECCCC---ceEEec
Confidence            7785 6899999875432  223458999999999999999987643 36899999999999999999874   344543


Q ss_pred             --cccccCccc
Q psy592          154 --NAIKDSKLR  162 (339)
Q Consensus       154 --~~v~dG~WH  162 (339)
                        ..++||+||
T Consensus       304 ~~~~l~DG~wH  314 (410)
T 3asi_A          304 SNAIINDGKYH  314 (410)
T ss_dssp             CSCCCCSSSCE
T ss_pred             CccCcCCCCeE
Confidence              478999999

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.88  E-value=1.5e-22  Score=221.61  Aligned_cols=155  Identities=21%  Similarity=0.368  Sum_probs=129.6

Q ss_pred             CCccceeeECCEEeecCCCccC--CCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCC-CCCCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGLH--KNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL-PGWSGTGCVTPTSP   77 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~--~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~-~g~~G~~Ce~~~~~   77 (339)
                      +||||+|.||++.+|+...+..  .++.+||+...+.|..+    ||.|+|+|+..|++|.|.|+ ++|+|+.|++...+
T Consensus       983 ~GCi~~l~ing~~~~l~~~~~~~~~~v~~gC~~~~~~C~~~----pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~~~ 1058 (1245)
T 3qcw_A          983 QGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQED----SCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTT 1058 (1245)
T ss_dssp             CEEEEEEEETTBCCCTTTTCSEEESCEEESSSCCCCCCCTT----SSSSSCEEEEETTEEEEECTTSSCBSTTSCBCCCE
T ss_pred             EEEeeeEEECCEEcccccchhccccceeeeeecccCceECC----cCCCCCEeCCCCCCCEEECCCCCCCCCCccCCCce
Confidence            5999999999999998766532  24678999877899998    99999999999999999999 69999999998766


Q ss_pred             cccc-CcceEEEeccCCC--CccccEEEEEEeecCCceEEEEEecCC-CCceEEEEEECCEEEEEEecCCCcccceeEEe
Q psy592           78 VTFK-PQSYIKYALSFEP--DKYTTQLQLKFRTREEFGELFRLSDQH-NREYAILEIKDSKLRFRYNLNNLKTDEKDIWL  153 (339)
Q Consensus        78 ~~F~-~~s~v~y~~~~~~--~~~~~~i~l~frT~~~~GlL~~~~~~~-~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~  153 (339)
                      +.|. +++++.|.++...  .....+|+|.|||++++|+||++++.. ..+|+.|+|.+|++.+.+++|..   +..+..
T Consensus      1059 ~~f~~~~~~v~y~~~~~~~~~~~~~~i~l~FrT~~~~g~Ll~~~s~~~~~~~l~l~l~~G~l~~~~~~g~~---~~~~~~ 1135 (1245)
T 3qcw_A         1059 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD---DIAIEE 1135 (1245)
T ss_dssp             EEEEEEEEEEEEECCTTCCCCBSEEEEEEEEEBCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSC---CEEEEC
T ss_pred             EEEcCCCcEEEEecCCCCccccccceEEEEEEEcCCCeEEEEEeccCCCCceEEEEEECCEEEEEEECCCC---ceEEec
Confidence            7774 5689999875432  223578999999999999999997653 36999999999999999999974   345543


Q ss_pred             --cccccCccc
Q psy592          154 --NAIKDSKLR  162 (339)
Q Consensus       154 --~~v~dG~WH  162 (339)
                        .+++||+||
T Consensus      1136 ~~~~v~DG~wH 1146 (1245)
T 3qcw_A         1136 SNAIINDGKYH 1146 (1245)
T ss_dssp             CSCCCBSSSCE
T ss_pred             CCcEecCCCeE
Confidence              368899999

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.87  E-value=6.3e-22  Score=216.64  Aligned_cols=168  Identities=16%  Similarity=0.347  Sum_probs=136.5

Q ss_pred             CCccceeeECCEEeecCCCcc---CCCCCCCCCC-CCcccCCCCCCCCCCCCCeeecCCCCceeeCC-CCCCCCCCCCCC
Q psy592            1 MENILNIVTITYLYDLANPGL---HKNSVPGCPA-TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL-PGWSGTGCVTPT   75 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~---~~~s~~gC~~-~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~-~g~~G~~Ce~~~   75 (339)
                      +||||+|.||++.+||.....   ..++.++|.. ..+.|..+    ||.|+|+|++.|.+|.|.|+ +||+|+.|+...
T Consensus       583 ~GCir~l~ing~~~dl~~~~~~~~~~gv~~gC~~~~~~~C~~~----pC~ngg~C~~~~~~~~C~C~~~g~~G~~C~~~~  658 (1245)
T 3qcw_A          583 VGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN----PCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA  658 (1245)
T ss_dssp             CEEEEEEEETTEEECHHHHTTTTTCTTEESSCCCCSSCGGGSC----CCCTTCEEEECSSSEEEECTTTTEESTTSCEEC
T ss_pred             eEEEEEEEECCEEcCchhhhhhhccccccccccccCCCCCCcc----CCCCCCEEeCCCCCeEEECCCCCcccccCcccc
Confidence            599999999999999965432   3455689985 35799998    99999999999999999999 799999999887


Q ss_pred             CCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEec-
Q psy592           76 SPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLN-  154 (339)
Q Consensus        76 ~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~~-  154 (339)
                      ..+.|.+.+|+.|..+.........|+|+|||++++|+||+++.....+|+.|+|.+|++++++++|++   +..++.. 
T Consensus       659 ~~~~fdGs~~l~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~l~~nlg~g---~~~~~~~~  735 (1245)
T 3qcw_A          659 TVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKG---PETLFAGY  735 (1245)
T ss_dssp             CEEEEESSCCEEEEEEEEEEESEEEEEEEEECSSSCEEEEEEEBTTBSCEEEEEEETTEEEEEEESSSS---EEEEEECS
T ss_pred             cccccCCCCceEEecccccccccceEEEEEEEcCCCEEEEEecCCCCccEEEEEEeCCEEEEEEECCCC---ceEEEeCc
Confidence            778899999999876543323356899999999999999998876567999999999999999999874   4455543 


Q ss_pred             ccccCccc----ccccCCcceeecC
Q psy592          155 AIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       155 ~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                      .++||+||    .|..+..++.+++
T Consensus       736 ~~~DG~WH~V~v~r~~~~~~l~vD~  760 (1245)
T 3qcw_A          736 NLNDNEWHTVRVVRRGKSLKLTVDD  760 (1245)
T ss_dssp             CCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             cccCCCcEEEEEEEeCCEEEEEECC
Confidence            78999999    4444444444443

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.55  E-value=1.1e-14  Score=148.39  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCCCCccc
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF   80 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~~~F   80 (339)
                      +|||+++.+|++.+||.++....+...                .|.               +     ++.|+....+++|
T Consensus       165 ~GCi~~l~in~~~i~l~~~~~~~g~~~----------------gC~---------------~-----~p~~~~~~~~~~F  208 (608)
T 2wjs_A          165 TGCMGETYFDNKPIGLWNFREKEGDCK----------------GCT---------------V-----SPQVEDSEGTIQF  208 (608)
T ss_dssp             CEEECCCEESSSBC----CCEEESCCC----------------CC----------------------------CCCCEEE
T ss_pred             cEEEEEEEECCEEccccccccccCCCC----------------CCC---------------C-----CcccccCCcceEE
Confidence            599999999999999987654332211                221               1     1235444346899


Q ss_pred             cCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-cccccC
Q psy592           81 KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDS  159 (339)
Q Consensus        81 ~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG  159 (339)
                      .+.+|+.|..+.........|+|+|||++++|+|||.+.....+|+.|+|.+|++++++++|++   ...+.. ..++||
T Consensus       209 ~g~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~g~~---~~~l~s~~~~nDg  285 (608)
T 2wjs_A          209 DGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSG---MTSVVSNQNHNDG  285 (608)
T ss_dssp             EEEEEEEEECCTTCBTTEEEEEEEEEESCSEEEEEEEECTTSSSEEEEEEETTEEEEEEECSSC---EEEEEEEEECCSS
T ss_pred             CCCcceEEeccccCCCcceEEEEEEEeCCCCeEEEEecCCCCCceEEEEEECCEEEEEEECCCC---cEEEEcCccccCC
Confidence            9999999975432223468999999999999999999865557999999999999999999985   334443 478999


Q ss_pred             ccc
Q psy592          160 KLR  162 (339)
Q Consensus       160 ~WH  162 (339)
                      +||
T Consensus       286 ~WH  288 (608)
T 2wjs_A          286 KWK  288 (608)
T ss_dssp             SCE
T ss_pred             ceE
Confidence            999

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.49  E-value=1.1e-13  Score=133.20  Aligned_cols=116  Identities=22%  Similarity=0.162  Sum_probs=85.8

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCCCCccc
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF   80 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~~~F   80 (339)
                      +|||++|.+|++.+||.++...                       .+.+.|...+                   .....|
T Consensus       166 ~GCi~~l~in~~~l~l~~~~~~-----------------------~~~~~C~~~~-------------------~~g~~F  203 (383)
T 2jd4_A          166 PACIGEIMVNGQQLDKDRPLSA-----------------------SAVDRCYVVA-------------------QEGTFF  203 (383)
T ss_dssp             CEEEEEEEETTEECCTTSCSEE-----------------------ESCBCCBSSE-------------------ESSEEE
T ss_pred             eEEeEEEEECCEEeccCCcccc-----------------------CccccccCcC-------------------ccCceE
Confidence            5999999999999998765322                       2223333211                   024678


Q ss_pred             cCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-----cc
Q psy592           81 KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-----NA  155 (339)
Q Consensus        81 ~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-----~~  155 (339)
                      .+.+|+.|..+.........|+|+|||++++|+|||.+.. ..+|+.|+|.+|++++.++.|++   ...+..     ..
T Consensus       204 ~g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~-~~d~l~l~L~~G~l~~~~~~g~g---~~~~~~~~~~~~~  279 (383)
T 2jd4_A          204 EGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSA-KVDAIGLEIVDGKVLFHVNNGAG---RITATYQPRAARA  279 (383)
T ss_dssp             EEEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEECS-SSCEEEEEEETTEEEEEEESSSC---EEEEEECCSSTTG
T ss_pred             CCCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEecCC-CCcEEEEEEECCEEEEEEECCCC---cEEEEEecCCCcc
Confidence            9999999953222233467899999999999999998764 47899999999999999999874   233332     25


Q ss_pred             cccCccc
Q psy592          156 IKDSKLR  162 (339)
Q Consensus       156 v~dG~WH  162 (339)
                      ++||+||
T Consensus       280 l~DG~WH  286 (383)
T 2jd4_A          280 LCDGKWH  286 (383)
T ss_dssp             GGSSSCE
T ss_pred             ccCCCcE
Confidence            8999999

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.46  E-value=1.6e-13  Score=118.88  Aligned_cols=97  Identities=14%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             CCCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-
Q psy592           75 TSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-  153 (339)
Q Consensus        75 ~~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-  153 (339)
                      ...++|.|.||+.|.++.........|+|+|||.+++|+|||.+.....+|+.|+|.+|++++++++|+.   ...+.. 
T Consensus         5 ~~~~~F~G~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~G~~---~~~~~~~   81 (182)
T 2r16_A            5 ATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKG---PETLFAG   81 (182)
T ss_dssp             CCEEEEESSCCEEEEEEEEEEESEEEEEEEEECSCSSEEEEEEECSSSCCEEEEEEETTEEEEEEESSSC---CEEEEEC
T ss_pred             cccEEECCCceEEEECCCcCCccceEEEEEEEECCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCC---ceEEEcC
Confidence            3578899999999987644334568899999999999999999875567999999999999999999985   345544 


Q ss_pred             cccccCccc----ccccCCcceeec
Q psy592          154 NAIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       154 ~~v~dG~WH----~r~~~~~~l~~~  174 (339)
                      ..++||+||    .|..+..+|.++
T Consensus        82 ~~lnDg~WH~V~v~r~~~~~~L~VD  106 (182)
T 2r16_A           82 YNLNDNEWHTVRVVRRGKSLKLTVD  106 (182)
T ss_dssp             SSCCSSSCEEEEEEEETTEEEEEET
T ss_pred             cccCCCCeEEEEEEEECCEEEEEEC
Confidence            478999999    444444344333

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.45  E-value=3.9e-13  Score=118.44  Aligned_cols=94  Identities=14%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCCCccccCcceEEEeccCC--------------CCccccEEEEEEeecCCceEEEEEecC-CCCceEEE
Q psy592           64 PGWSGTGCVTPTSPVTFKPQSYIKYALSFE--------------PDKYTTQLQLKFRTREEFGELFRLSDQ-HNREYAIL  128 (339)
Q Consensus        64 ~g~~G~~Ce~~~~~~~F~~~s~v~y~~~~~--------------~~~~~~~i~l~frT~~~~GlL~~~~~~-~~~~~i~L  128 (339)
                      .+|.++.|+..  +++|.|.||+.|.....              ......+|+|+|||.+++|+|||.+.. ...+|+.|
T Consensus         3 ~~~e~~~~~~~--~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~dfl~l   80 (204)
T 1pz7_A            3 VIIEKAAGDAE--AIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIAL   80 (204)
T ss_dssp             ----CTTSSSC--CEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEE
T ss_pred             ccccccccccc--ceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCCCCCCeEEE
Confidence            46788899876  68899999999975321              112357899999999999999998752 24799999


Q ss_pred             EEECCEEEEEEecCCCcccceeEEe-cccccCccc
Q psy592          129 EIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDSKLR  162 (339)
Q Consensus       129 ~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG~WH  162 (339)
                      +|.+|++++.+++|++   ...+.. .+++||+||
T Consensus        81 ~L~~G~l~~~~~~G~g---~~~v~s~~~lnDg~WH  112 (204)
T 1pz7_A           81 AIVDGFVQMMYDLGSK---PVVLRSTVPINTNHWT  112 (204)
T ss_dssp             EEETTEEEEEEESSSC---CEEEEEEEECCSSSCE
T ss_pred             EEECCEEEEEEECCCC---eEEEECCcccCCCCeE
Confidence            9999999999999985   334443 489999999

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.42  E-value=7.4e-13  Score=118.21  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=70.5

Q ss_pred             CCCCCCCCcccc-CcceEEEeccC--CCCccccEEEEEEeecCCceEEEEEecCC-CCceEEEEEECCEEEEEEecCCCc
Q psy592           70 GCVTPTSPVTFK-PQSYIKYALSF--EPDKYTTQLQLKFRTREEFGELFRLSDQH-NREYAILEIKDSKLRFRYNLNNLK  145 (339)
Q Consensus        70 ~Ce~~~~~~~F~-~~s~v~y~~~~--~~~~~~~~i~l~frT~~~~GlL~~~~~~~-~~~~i~L~L~~G~l~~~~~lG~~~  145 (339)
                      +|+.+..+++|. +.+|+.|.++.  .......+|+|+|||++++|+|||..... ..||+.|+|.+|++++++++|+. 
T Consensus         5 ~c~~~~t~~~F~~g~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~l~~~~~~G~~-   83 (220)
T 2r1b_A            5 RGGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD-   83 (220)
T ss_dssp             -CCCCSSEEEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTEEEEEEESSSS-
T ss_pred             ccCCCCceEEECCCCeEEEEECCCCCcccccCcEEEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCEEEEEEECCCC-
Confidence            566655678896 57999998765  22333558999999999999999976542 47999999999999999999985 


Q ss_pred             ccceeEEec--ccccCccc
Q psy592          146 TDEKDIWLN--AIKDSKLR  162 (339)
Q Consensus       146 ~~~~~l~~~--~v~dG~WH  162 (339)
                        ...+...  .++||+||
T Consensus        84 --~~~~~~~~~~vnDG~WH  100 (220)
T 2r1b_A           84 --DIAIEESNAIINDGKYH  100 (220)
T ss_dssp             --CEEEECTTCCCCSSSCE
T ss_pred             --ceEEEeCceEecCCceE
Confidence              4455543  68999999

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.41  E-value=6.4e-13  Score=129.65  Aligned_cols=116  Identities=12%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             CCCCCCeeecCCCCceeeCCCC-CCCCCCCCCCCCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPG-WSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN  122 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g-~~G~~Ce~~~~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~  122 (339)
                      +|.+++.|++...   +.|.+. |.         ..+|.+.+|+.|.++... .....|+|+|||.+++|+|||.+....
T Consensus        20 ~C~~~~~C~p~~~---~~~~~~~~~---------~~~F~g~~~~~~~f~~~~-~~~~~is~~FrT~~~~GlLly~~~~~~   86 (422)
T 1h30_A           20 TCEDILPCVPFSV---AKSVKSLYL---------GRMFSGTPVIRLRFKRLQ-PTRLVAEFDFRTFDPEGILLFAGGHQD   86 (422)
T ss_dssp             EEEECCCSSCBCC---CEETTEEEC---------CC-----CCEEEECCBSS-CCCCEEEEEEEECCSSEEEEEEESCTT
T ss_pred             cCCCCCccCCccc---ccCccccee---------eeEECCCceEEEEccCCC-CCceEEEEEEEeCCCCeEEEEECCCCC
Confidence            8888888887654   334433 32         468999999999875543 457899999999999999999997556


Q ss_pred             CceEEEEEECCEEEEEEecCCCcccceeEEe-cccccCccc----ccccCCcceeecC
Q psy592          123 REYAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       123 ~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                      .+|++|+|.+|++++++++|+.   ...+.. ..++||+||    .|..+..++.+++
T Consensus        87 ~df~~l~L~~G~l~~~~~~g~~---~~~~~~~~~~nDg~WH~V~v~r~~~~~~L~VD~  141 (422)
T 1h30_A           87 STWIVLALRAGRLELQLRYNGV---GRVTSSGPVINHGMWQTISVEELARNLVIKVNR  141 (422)
T ss_dssp             SEEEEEEEETTEEEEEEEETTE---EEEEEEEEECCSSCCEEEEEEECSSEEEEEETT
T ss_pred             CcEEEEEEECCEEEEEEECCCC---cEEEecCceecCCCCEEEEEEEcCCEEEEEECC
Confidence            7999999999999999999974   334433 489999999    6666666666665

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.40  E-value=1.1e-12  Score=114.44  Aligned_cols=84  Identities=18%  Similarity=0.349  Sum_probs=68.7

Q ss_pred             CCccccCcceEEEeccCCC-----------CccccEEEEEEeecCCceEEEEEecC-CCCceEEEEEECCEEEEEEecCC
Q psy592           76 SPVTFKPQSYIKYALSFEP-----------DKYTTQLQLKFRTREEFGELFRLSDQ-HNREYAILEIKDSKLRFRYNLNN  143 (339)
Q Consensus        76 ~~~~F~~~s~v~y~~~~~~-----------~~~~~~i~l~frT~~~~GlL~~~~~~-~~~~~i~L~L~~G~l~~~~~lG~  143 (339)
                      .+++|.|++|++|..+...           .....+|+|+|||++++|+|||.+.. ...+|+.|+|.+|++++++++|+
T Consensus         3 ~~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~l~~~~~~G~   82 (191)
T 3v64_A            3 ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGS   82 (191)
T ss_dssp             CEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSS
T ss_pred             ccceecCceeEEEccccccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCEEEEEEECCC
Confidence            4678999999999876432           13467899999999999999999763 24799999999999999999997


Q ss_pred             CcccceeEEe-cccccCccc
Q psy592          144 LKTDEKDIWL-NAIKDSKLR  162 (339)
Q Consensus       144 ~~~~~~~l~~-~~v~dG~WH  162 (339)
                      +   ...+.. .+++||+||
T Consensus        83 ~---~~~l~s~~~v~Dg~WH   99 (191)
T 3v64_A           83 Q---PVVLRSTVKVNTNRWL   99 (191)
T ss_dssp             C---CEEEEEEEECTTSSCE
T ss_pred             c---cEEEecCccccCCCCE
Confidence            5   344443 479999999

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.38  E-value=1.2e-12  Score=126.60  Aligned_cols=115  Identities=19%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCCCCccc
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF   80 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~~~F   80 (339)
                      +||||+|.+|++.+||..+....+. .       .|...    ++                              ....|
T Consensus       179 ~GCi~~l~in~~~~~l~~~~~~~~~-~-------~C~~~----~~------------------------------~g~~F  216 (394)
T 1dyk_A          179 DGCVRNLHMEQAPVDLDQPTSSFHV-G-------TCFAN----AE------------------------------SGTYF  216 (394)
T ss_dssp             SEEEEEEEESSSCCCTTSCSEEESC-B-------CCBSS----EE------------------------------ESEEE
T ss_pred             cEeeeEEEECCEEecCCCccccCcC-C-------CCCCC----Cc------------------------------cCcee
Confidence            5999999999999999876432221 1       12211    11                              13457


Q ss_pred             cCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-----cc
Q psy592           81 KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-----NA  155 (339)
Q Consensus        81 ~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-----~~  155 (339)
                      .+.+|+.+.... .......|+|+|||++++|+|||.+.. ..+|+.|+|.+|++++++++|..   ...+..     ..
T Consensus       217 ~g~gy~~~~~~~-~~~~~~~is~~frT~~~~GlLl~~~~~-~~~~l~l~L~~G~l~~~~~~g~~---~~~~~~~~~~~~~  291 (394)
T 1dyk_A          217 DGTGFAKAVGGF-KVGLDLLVEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDEKLMFHVDNGAG---RFTAIYDAEIPGH  291 (394)
T ss_dssp             EEEEEEECCSSB-CCBSEEEEEEEEEESCSCEEEEEEECS-SSCEEEEEEETTEEEEEEESSSC---CEEEEECCCSTTS
T ss_pred             CCCceeEEcCCc-ccCCceEEEEEEEeCCCCEEEEEecCC-CCCEEEEEEECCEEEEEEECCCC---cEEEEEecCCCcc
Confidence            888888875322 223367899999999999999999643 47899999999999999999874   233332     36


Q ss_pred             cccCccc
Q psy592          156 IKDSKLR  162 (339)
Q Consensus       156 v~dG~WH  162 (339)
                      ++||+||
T Consensus       292 l~DG~WH  298 (394)
T 1dyk_A          292 MCNGQWH  298 (394)
T ss_dssp             TTSSSCE
T ss_pred             ccCCceE
Confidence            8999999

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.38  E-value=1.3e-12  Score=133.15  Aligned_cols=118  Identities=17%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             CCccceeeECCEEeecCCCccCCCCCCCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCCCCccc
Q psy592            1 MENILNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF   80 (339)
Q Consensus         1 ~GCIrnl~vn~~~~dl~~~~~~~~s~~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~~~F   80 (339)
                      +|||++|.+|++.+||..+....++..+|+..           +                              ..+++|
T Consensus       354 ~GCi~~v~in~~~~~l~~~~~~~~v~~gC~~~-----------~------------------------------~~~~~F  392 (608)
T 2wjs_A          354 SGCLKDIEISRTPYNILSSPDYVGVTKGCSLE-----------N------------------------------VYTVSF  392 (608)
T ss_dssp             EEEEEEEEETTEEECGGGCSSCEEEEESCCCC-----------C------------------------------TTEEEC
T ss_pred             eEEeeeEEECCEecCccccccccccccCCCcc-----------c------------------------------cccccc
Confidence            49999999999999998776555566666531           1                              124678


Q ss_pred             cCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe--ccccc
Q psy592           81 KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL--NAIKD  158 (339)
Q Consensus        81 ~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~--~~v~d  158 (339)
                      .+++|+.|...  .......|+|.|||++++|+|||.+.. ..+|+.|+|.+|++.+.++.|+.......+..  ..++|
T Consensus       393 ~~~g~~~~~~~--~~~~~~~i~~~FRT~~~~GlLl~~~~~-~~~~l~l~L~~G~l~~~~~~g~~~~~~~~l~~~~~~l~D  469 (608)
T 2wjs_A          393 PKPGFVELAAV--SIDVGTEINLSFSTRNESGIILLGSGG-GQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHD  469 (608)
T ss_dssp             SSSCEEEECCC--CBCTTEEEEEEEEESCSSEEEEEEC----CCEEEEEEETTEEEEEEEC----CEEEEECCCSSCSSS
T ss_pred             CCCCeEEecCc--cCCCCcEEEEEEEeCCCCeEEEEEcCC-CCceEEEEEECCEEEEEEECCCCceeEEEEeCCCcccCC
Confidence            88899988632  223467899999999999999999764 47899999999999999999874211122332  47899


Q ss_pred             Cccc
Q psy592          159 SKLR  162 (339)
Q Consensus       159 G~WH  162 (339)
                      |+||
T Consensus       470 G~WH  473 (608)
T 2wjs_A          470 GREH  473 (608)
T ss_dssp             SSCE
T ss_pred             CCeE
Confidence            9999

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=99.34  E-value=4.6e-12  Score=113.52  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=72.4

Q ss_pred             CCCCCCCCC--CCccccCcceEEEeccCC--CCccccEEEEEEeecCCceEEEEEecC-CCCceEEEEEECCEEEEEEec
Q psy592           67 SGTGCVTPT--SPVTFKPQSYIKYALSFE--PDKYTTQLQLKFRTREEFGELFRLSDQ-HNREYAILEIKDSKLRFRYNL  141 (339)
Q Consensus        67 ~G~~Ce~~~--~~~~F~~~s~v~y~~~~~--~~~~~~~i~l~frT~~~~GlL~~~~~~-~~~~~i~L~L~~G~l~~~~~l  141 (339)
                      .|.+|+..-  ..+.|.+ +|+.|.++..  .......|+|+|||++++|+|||.+.. ...+|+.|+|++|++++++++
T Consensus        30 ~g~r~~~~gc~y~f~~~g-s~i~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~l~~~~~~  108 (226)
T 2r1d_A           30 ASLRGGHAGTTYIFSKGG-GQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV  108 (226)
T ss_dssp             -----CCCSSEEEEEEEE-EEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred             cccCcccCCeEEEEecCC-cEEEEECCccccccccccEEEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCEEEEEEEC
Confidence            355565431  1356777 9999997652  223356899999999999999998643 257999999999999999999


Q ss_pred             CCCcccceeEEe--cccccCccc----ccccCCcceeec
Q psy592          142 NNLKTDEKDIWL--NAIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       142 G~~~~~~~~l~~--~~v~dG~WH----~r~~~~~~l~~~  174 (339)
                      |+.   ...+..  ..++||+||    .|..++.+++++
T Consensus       109 G~~---~~~~~~~~~~vnDG~WH~V~v~r~~~~~~L~VD  144 (226)
T 2r1d_A          109 GTD---DIAIEESNAIINDGKYHVVRFTRSGGNATLQVD  144 (226)
T ss_dssp             SSC---EEEEECCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             CCC---cEEEEeCCeEecCCCCEEEEEEEeCCEEEEEEc
Confidence            985   445554  368999999    445554343333

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.33  E-value=6.8e-12  Score=108.16  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=72.3

Q ss_pred             CCcccc-CcceEEEeccCC--CCccccEEEEEEeecCCceEEEEEecC-CCCceEEEEEECCEEEEEEecCCCcccceeE
Q psy592           76 SPVTFK-PQSYIKYALSFE--PDKYTTQLQLKFRTREEFGELFRLSDQ-HNREYAILEIKDSKLRFRYNLNNLKTDEKDI  151 (339)
Q Consensus        76 ~~~~F~-~~s~v~y~~~~~--~~~~~~~i~l~frT~~~~GlL~~~~~~-~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l  151 (339)
                      .++.|. +++|+.|.++..  .......|+|+|||++++|+|||..+. ...+|+.|+|.+|++++++++|+.   +..+
T Consensus         5 t~~~F~~~~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~G~~---~~~~   81 (178)
T 3bod_A            5 STYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD---DIAI   81 (178)
T ss_dssp             CEEEEEEEEEEEEEECCTTSCCCBSEEEEEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTEEEEEEESSSC---CEEE
T ss_pred             eEEEECCCCcEEEEECCCcCCCCccccEEEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEECCCC---ceEE
Confidence            467896 479999988652  233467899999999999999997532 357999999999999999999985   3444


Q ss_pred             Ee--cccccCccc----ccccCCcceeec
Q psy592          152 WL--NAIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       152 ~~--~~v~dG~WH----~r~~~~~~l~~~  174 (339)
                      ..  ..++||+||    .|..++.++.++
T Consensus        82 ~~~~~~vnDg~WH~V~v~r~~~~~~L~VD  110 (178)
T 3bod_A           82 EESNAIINDGKYHVVRFTRSGGNATLQVD  110 (178)
T ss_dssp             ECCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             ecCCcCccCCCeEEEEEEEeCCEEEEEEe
Confidence            43  378999999    455554444433

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.33  E-value=7e-12  Score=107.36  Aligned_cols=79  Identities=11%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             ccccCcce--EEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-c
Q psy592           78 VTFKPQSY--IKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-N  154 (339)
Q Consensus        78 ~~F~~~s~--v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~  154 (339)
                      ..|.+.+|  +.|.....   ...+|+|+|||++++|+|||.+.....+|+.|+|.+|+++++++.|+.   ...+.. .
T Consensus         8 ~~F~g~s~~~l~f~~~~~---~~~~is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~---~~~~~s~~   81 (170)
T 1d2s_A            8 NGPGQEPIAVMTFDLTKI---TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA---QLTVGAGP   81 (170)
T ss_dssp             CTTCCSCSEEEEEEGGGC---CCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSC---EEEEECSC
T ss_pred             cCCCCCceEEEEecCCCC---CceEEEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEECCCc---eEEEeCCC
Confidence            35777664  55554432   357999999999999999999876557999999999999999999874   344443 4


Q ss_pred             ccccCccc
Q psy592          155 AIKDSKLR  162 (339)
Q Consensus       155 ~v~dG~WH  162 (339)
                      .++||+||
T Consensus        82 ~vnDG~WH   89 (170)
T 1d2s_A           82 RLDDGRWH   89 (170)
T ss_dssp             CCCSSSCE
T ss_pred             ccCCCCCE
Confidence            79999999

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.29  E-value=9.1e-12  Score=107.72  Aligned_cols=83  Identities=22%  Similarity=0.329  Sum_probs=66.0

Q ss_pred             CCccccCcceEEEeccCCCC-ccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEE--
Q psy592           76 SPVTFKPQSYIKYALSFEPD-KYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIW--  152 (339)
Q Consensus        76 ~~~~F~~~s~v~y~~~~~~~-~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~--  152 (339)
                      ...+|.|++|+.|..+..+. .....|+|+|||++++|+|||.+.  ..+|+.|+|.+|++++++++|++.  ...+.  
T Consensus         6 ~~~~F~G~sy~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~g~--~~d~l~l~L~~G~l~~~~~~G~g~--~~~~~~~   81 (184)
T 2h0b_A            6 YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGK--SADYVNLALKNGAVSLVINLGSGA--FEALVEP   81 (184)
T ss_dssp             CEEEEESSEEEEEECSSSCEEESEEEEEEEEEESCSCEEEEEECC--TTEEEEEEEETTEEEEEEEESSCE--EEEEECC
T ss_pred             ceeEECCceEEEEccccCccccCccEEEEEEEeCCCCEEEEEeCC--CCCEEEEEEECCEEEEEEECCCCe--EEEEEec
Confidence            46789999999998754332 235789999999999999999864  479999999999999999998752  11222  


Q ss_pred             -ecccccCccc
Q psy592          153 -LNAIKDSKLR  162 (339)
Q Consensus       153 -~~~v~dG~WH  162 (339)
                       ...++||+||
T Consensus        82 ~~~~l~Dg~WH   92 (184)
T 2h0b_A           82 VNGKFNDNAWH   92 (184)
T ss_dssp             SSSCSSSSSCE
T ss_pred             CCcccCCCCeE
Confidence             1378999999

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.28  E-value=1.7e-11  Score=106.60  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CccccCcceEEEeccCCC---CccccEEEEEEeecCCceEEEEEecC--CCCceEEEEEECCEEEEEEecCCCcccceeE
Q psy592           77 PVTFKPQSYIKYALSFEP---DKYTTQLQLKFRTREEFGELFRLSDQ--HNREYAILEIKDSKLRFRYNLNNLKTDEKDI  151 (339)
Q Consensus        77 ~~~F~~~s~v~y~~~~~~---~~~~~~i~l~frT~~~~GlL~~~~~~--~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l  151 (339)
                      ..+|.|.||+.|......   ......|+|+|||++++|+|||.+..  ...+|+.|+|.+|++++.+++|++   ...+
T Consensus        11 ~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g---~~~l   87 (189)
T 3pve_A           11 LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKG---AAII   87 (189)
T ss_dssp             CEEEESSCEEEECCGGGC-------CEEEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEESSSC---EEEE
T ss_pred             eeEECCCceEEEcCcccccccccceEEEEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEecCCC---CEEE
Confidence            468999999999875421   13368999999999999999999863  347999999999999999999875   3445


Q ss_pred             Ee-cccccCccc
Q psy592          152 WL-NAIKDSKLR  162 (339)
Q Consensus       152 ~~-~~v~dG~WH  162 (339)
                      .. .+++||+||
T Consensus        88 ~s~~~l~Dg~WH   99 (189)
T 3pve_A           88 RSKEPIALGTWV   99 (189)
T ss_dssp             ECSSCCCTTSEE
T ss_pred             EcCcccCCCCEE
Confidence            43 378999999

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.27  E-value=1.5e-11  Score=108.37  Aligned_cols=85  Identities=12%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             CCCCCCccccCc------ceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCc
Q psy592           72 VTPTSPVTFKPQ------SYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLK  145 (339)
Q Consensus        72 e~~~~~~~F~~~------s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~  145 (339)
                      ++...+++|.+.      +|+.|....   ....+|+|+|||++++|+|||.+.....+|+.|+|.+|+++++++.|+. 
T Consensus        10 ~~~~~~~~F~~~~~~~~~~y~~~~~~~---~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~-   85 (205)
T 1f5f_A           10 AHDPPAVHLSNGPGQEPIAVMTFDLTK---ITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA-   85 (205)
T ss_dssp             ---CCCEESCCTTCCSCSEEEEEEGGG---CCCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSC-
T ss_pred             ccCCccEEeccCCCCcEeEEEEECCCC---CCceEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCc-
Confidence            344457788752      344444322   2347999999999999999999876557999999999999999999874 


Q ss_pred             ccceeEEe-cccccCccc
Q psy592          146 TDEKDIWL-NAIKDSKLR  162 (339)
Q Consensus       146 ~~~~~l~~-~~v~dG~WH  162 (339)
                        +..+.. ..++||+||
T Consensus        86 --~~~~~s~~~vnDG~WH  101 (205)
T 1f5f_A           86 --QLTVGAGPRLDDGRWH  101 (205)
T ss_dssp             --EEEEECSCCCCSSSCE
T ss_pred             --eEEEecCCccCCCCCE
Confidence              344443 379999999

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.26  E-value=3.4e-11  Score=116.27  Aligned_cols=96  Identities=20%  Similarity=0.313  Sum_probs=74.9

Q ss_pred             Ccccc--CcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-
Q psy592           77 PVTFK--PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-  153 (339)
Q Consensus        77 ~~~F~--~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-  153 (339)
                      ++.|.  +.||+.|.++.........|+|+|||.+++|+|||.+.....+|+.|+|.+|++++++++|++   ...+.. 
T Consensus        35 a~~Fg~~~~s~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~g~g---~~~~~~~  111 (394)
T 1dyk_A           35 SKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSG---DTSTMIP  111 (394)
T ss_dssp             CEECCSSTTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSC---EEEEECC
T ss_pred             ceecCCCCCcEEEEEcCccccccceEEEEEEEeCCCCeEEEEcCCCCCCceEEEEEECCEEEEEEECCCC---ceEEEcc
Confidence            44554  479999887654445578999999999999999999875457999999999999999999985   345554 


Q ss_pred             cccccCccc----ccccCCcceeecC
Q psy592          154 NAIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       154 ~~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                      ..++||+||    .|..++.+|.+++
T Consensus       112 ~~~~Dg~WH~V~v~r~~~~~~L~VD~  137 (394)
T 1dyk_A          112 TKINDGQWHKIKIVRVKQEGILYVDD  137 (394)
T ss_dssp             SCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             cccCCCCEEEEEEEEeCCEEEEEEcC
Confidence            378999999    6666655555554

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.23  E-value=8.6e-11  Score=112.85  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=75.4

Q ss_pred             Ccccc--CcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-
Q psy592           77 PVTFK--PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-  153 (339)
Q Consensus        77 ~~~F~--~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-  153 (339)
                      +++|.  +.||+.|.+..........|+|+|||.+++|+|||.+.....+|+.|+|.+|++++++++|++   ...+.. 
T Consensus        21 a~~Fg~~~~S~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~---~~~~~~~   97 (383)
T 2jd4_A           21 AHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKG---RTKVSHP   97 (383)
T ss_dssp             CEECCSSTTCEEEEECCSCCCSSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEECSSC---EEEEECC
T ss_pred             ccccCCCCCeeEEEeCCchhcccceEEEEEEEcCCCCeEEEEeCCCCCCcEEEEEEECCEEEEEEECCCC---eEEEeCc
Confidence            56665  489999997655445578999999999999999999865457999999999999999999985   344544 


Q ss_pred             cccccCccc----ccccCCcceeecC
Q psy592          154 NAIKDSKLR----FRYNLNNLKTDEK  175 (339)
Q Consensus       154 ~~v~dG~WH----~r~~~~~~l~~~~  175 (339)
                      ..++||+||    .|..+..+|.+++
T Consensus        98 ~~~~Dg~WH~V~v~r~~~~~~L~VD~  123 (383)
T 2jd4_A           98 ALLSDGKWHTVKTEYIKRKAFMTVDG  123 (383)
T ss_dssp             CCCTTSSCEEEEEEEETTEEEEEETT
T ss_pred             ceecCCCcEEEEEEEeCCEEEEEEcC
Confidence            478999999    5555555555544

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.22  E-value=4.1e-11  Score=104.72  Aligned_cols=95  Identities=18%  Similarity=0.299  Sum_probs=71.1

Q ss_pred             CccccCcceEEEeccCCC---CccccEEEEEEeecCCceEEEEEec-----CCCCceEEEEEECCEEEEEEecCCCcccc
Q psy592           77 PVTFKPQSYIKYALSFEP---DKYTTQLQLKFRTREEFGELFRLSD-----QHNREYAILEIKDSKLRFRYNLNNLKTDE  148 (339)
Q Consensus        77 ~~~F~~~s~v~y~~~~~~---~~~~~~i~l~frT~~~~GlL~~~~~-----~~~~~~i~L~L~~G~l~~~~~lG~~~~~~  148 (339)
                      .+.|.|+||+.|.....+   ......|+|+|||++++|+|||.+.     ....+|+.|+|.+|++++.+++|++   +
T Consensus         7 ~~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g---~   83 (195)
T 3sh4_A            7 GAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSG---E   83 (195)
T ss_dssp             EEEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEECSSC---E
T ss_pred             cCEECCCEEEEEccccccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEECCCC---c
Confidence            568999999999864221   1235789999999999999999874     2247899999999999999999975   3


Q ss_pred             eeEEe-cccccCccc----ccccCCcceeec
Q psy592          149 KDIWL-NAIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       149 ~~l~~-~~v~dG~WH----~r~~~~~~l~~~  174 (339)
                      ..+.. .+++||+||    .|..+..+|.++
T Consensus        84 ~~~~s~~~l~Dg~WH~V~v~r~~~~~~L~VD  114 (195)
T 3sh4_A           84 ARLVSEDPINDGEWHRVTALREGRRGSIQVD  114 (195)
T ss_dssp             EEEEEEEECCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEcCceeCCCCeEEEEEEEeCCEEEEEEC
Confidence            34443 479999999    444443334433

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.16  E-value=1e-10  Score=113.99  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             ccccCcceEEEeccCC--------CCccccEEEEEEeecCCceEEEEEecCCC-CceEEEEEECCEE-------EEEEec
Q psy592           78 VTFKPQSYIKYALSFE--------PDKYTTQLQLKFRTREEFGELFRLSDQHN-REYAILEIKDSKL-------RFRYNL  141 (339)
Q Consensus        78 ~~F~~~s~v~y~~~~~--------~~~~~~~i~l~frT~~~~GlL~~~~~~~~-~~~i~L~L~~G~l-------~~~~~l  141 (339)
                      .+|.+.+|+.|.....        .......|+|.|||++++|+|||.+..++ .+|+.|+|.+|++       ++.++.
T Consensus       222 ~~F~g~s~~~~~~~~~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~~~~~d~l~l~L~~G~le~~~~~~~l~~~~  301 (422)
T 1h30_A          222 SFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAV  301 (422)
T ss_dssp             EEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEE
T ss_pred             ceECCCeEEEEecCccccccccccccccceEEEEEEecCCCCEEEEEecCCCcCCCcEEEEEEcCccccccccceEEEEe
Confidence            5788999999975332        11235689999999999999999874322 6899999999987       577777


Q ss_pred             CCCcccceeEE-ecccccCccc
Q psy592          142 NNLKTDEKDIW-LNAIKDSKLR  162 (339)
Q Consensus       142 G~~~~~~~~l~-~~~v~dG~WH  162 (339)
                      +.+   . .+. -..++||+||
T Consensus       302 ~~g---~-~~~~~~~l~DG~WH  319 (422)
T 1h30_A          302 EHT---A-LALMEIKVCDGQEH  319 (422)
T ss_dssp             TTE---E-EEEEECCTTSSCCE
T ss_pred             CCe---e-EEEeeecccCCCEe
Confidence            764   2 222 2578999999

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.96  E-value=1.8e-10  Score=79.66  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCee-----ecCCCCceeeCCCCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVC-----VGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~C-----v~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|....+.|.++    ||+|+|+|     ++..++|+|.|++||+|.+||+.+
T Consensus         3 ~c~~~~~eC~s~----pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v   51 (55)
T 3u7u_G            3 SHLVKCAEKEKT----FCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYV   51 (55)
T ss_dssp             CCEEECCSTTTT----TSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEEC
T ss_pred             CCcccCCCCcCC----CCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccC
Confidence            566667899998    99999999     466789999999999999999875

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=98.96  E-value=2.1e-09  Score=104.15  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=65.5

Q ss_pred             CCcccc-CcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEE--
Q psy592           76 SPVTFK-PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIW--  152 (339)
Q Consensus        76 ~~~~F~-~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~--  152 (339)
                      .+++|. +.||+.|....  .....+|+|+|||++++|+|||.+.. ..+|+.|+|.+|++++++++|++   ...+.  
T Consensus         6 ~~v~F~~~~Syl~~p~~~--~~~~~~is~~frT~~~~GlLly~~~~-~~dfi~l~L~~G~l~~~~~~G~g---~~~~~~~   79 (410)
T 3asi_A            6 DPVTFKTKSSYVALATLQ--AYTSMHLFFQFKTTSLDGLILYNSGD-GNDFIVVELVKGYLHYVFDLGNG---ANLIKGS   79 (410)
T ss_dssp             CCEEECSTTCEEEESCCC--CSSCEEEEEEEECSCSCEEEEEEEBS-TTCEEEEEEETTEEEEEEESSSC---EEEEECC
T ss_pred             cccEeCCCCeeEEeCCCC--CCceEEEEEEEEeCCCCeEEEEeCCC-CCCEEEEEEECCEEEEEEECCCC---cEEEEec
Confidence            467895 68999987532  23467999999999999999998753 47999999999999999999985   34443  


Q ss_pred             -ecccccCccc
Q psy592          153 -LNAIKDSKLR  162 (339)
Q Consensus       153 -~~~v~dG~WH  162 (339)
                       ..+++||+||
T Consensus        80 s~~~vnDg~WH   90 (410)
T 3asi_A           80 SNKPLNDNQWH   90 (410)
T ss_dssp             CSSCSCSSSCE
T ss_pred             cCcEeCCCCeE
Confidence             2378999999

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.73  E-value=9.2e-09  Score=65.82  Aligned_cols=37  Identities=22%  Similarity=0.594  Sum_probs=33.7

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      .+.|..+    ||.|+|+|++.+++|+|.|++||+|.+|+.
T Consensus         3 ~d~C~~~----pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            3 GDQCESN----PCLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCTTTTC----CCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             cccCCCC----CCCCCCEeEcCCCceEeECCCCCcCCccCC
Confidence            4678877    999999999999999999999999999973

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.44  E-value=1.8e-07  Score=64.00  Aligned_cols=33  Identities=33%  Similarity=0.757  Sum_probs=30.2

Q ss_pred             CCCCCCCeee--cCCCCceeeCCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        43 ~pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .||.|+|+|+  ...++|+|.|++||+|.+|+..+
T Consensus        12 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A           12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence            3999999999  77889999999999999999864

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.43  E-value=1.2e-07  Score=62.61  Aligned_cols=33  Identities=30%  Similarity=0.639  Sum_probs=29.4

Q ss_pred             CCCCCCCeee--cCCCCceeeCCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        43 ~pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .||.|+|+|+  ...++|+|.|++||+|.+|+..+
T Consensus         9 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A            9 GYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             SCCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            3999999998  66789999999999999998754

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.43  E-value=9.3e-08  Score=63.48  Aligned_cols=40  Identities=20%  Similarity=0.475  Sum_probs=31.0

Q ss_pred             CcccCCCCCCCCCCCCCeeecCC--CCceeeCCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSM--HTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~--~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .++|... ...||.| |+|+...  ++|+|.|++||+|.+|+..
T Consensus         3 i~~C~~~-~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A            3 ITKCSSD-MNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             EECCCTT-CCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             cccCCCC-CCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            3567661 0129999 8999743  6899999999999999875

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.42  E-value=5.6e-08  Score=69.04  Aligned_cols=38  Identities=24%  Similarity=0.525  Sum_probs=33.3

Q ss_pred             cccCCCCCCCCCCCCCeeec-----CCCCceeeCCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVG-----SMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~-----~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      +.|..+    ||+|+|+|+.     ..++|+|.|++||+|.+|+..+
T Consensus         7 ~~C~~~----pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i   49 (63)
T 1hae_A            7 AEKEKT----FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV   49 (63)
T ss_dssp             CHHHHT----TSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEEC
T ss_pred             CCCCCC----cCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCc
Confidence            467777    9999999996     5679999999999999999765

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.37  E-value=1e-07  Score=65.31  Aligned_cols=33  Identities=24%  Similarity=0.662  Sum_probs=29.6

Q ss_pred             CCCCCCCeee--cCCCCceeeCCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        43 ~pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .||.|+|+|+  +..++|+|.|++||+|.+|+..+
T Consensus        12 ~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           12 GYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             CEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence            4999999998  66788999999999999999764

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.29  E-value=1e-07  Score=67.10  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             CcccCCCCCCCCCCCC--CeeecCCCCceeeCCCCCC-CCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEH--GVCVGSMHTAKCQCLPGWS-GTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~--g~Cv~~~~~~~C~C~~g~~-G~~Ce~~   74 (339)
                      .+.|.++    ||.|+  |+|++..++|+|.|++||+ |.+|+..
T Consensus        11 ~d~C~sn----PC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           11 PAACSSN----PCGPEAAGTCKETNSGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             CCHHHHC----SSCSSSCCEEEECSSEEEEECCTTEEEEECSSSC
T ss_pred             CCcCcCC----CCcCCCccccccCCCceEeECCCCCccCCCCCCC
Confidence            4688888    99999  8999999999999999999 9999764

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.18  E-value=8.8e-07  Score=67.54  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=38.3

Q ss_pred             CCC-CCCcccCCCCCCCCCCCCCeeecCC--CCceeeCCCCCCCCCCCCCC
Q psy592           28 GCP-ATEAVCNAHSRLHCYPEHGVCVGSM--HTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        28 gC~-~~~~~C~~~~~~~pC~~~g~Cv~~~--~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|. ...+.|..+    ||.|+|+|+...  ++|+|.|++||+|.+|+..+
T Consensus        42 ~C~~~~~~~C~~~----pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~i   88 (91)
T 1tpg_A           42 QCHSVPVKSCSEP----RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   88 (91)
T ss_dssp             BCCEECEEECSSC----CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             ccccCcCCcccCC----CCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCC
Confidence            675 356789888    999999999987  89999999999999999765

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.99  E-value=1.4e-06  Score=59.23  Aligned_cols=31  Identities=19%  Similarity=0.550  Sum_probs=27.6

Q ss_pred             CCCCCCeeec----CCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVG----SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~----~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ||+|+|+|+.    ..++|+|.|++||+|.+|+..
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            9999999996    346899999999999999864

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.93  E-value=1.7e-06  Score=84.11  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=63.9

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCCCCC---ccc-cCcceEEEeccC-CC------CccccEEEEEEeecCCce
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP---VTF-KPQSYIKYALSF-EP------DKYTTQLQLKFRTREEFG  112 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~---~~F-~~~s~v~y~~~~-~~------~~~~~~i~l~frT~~~~G  112 (339)
                      +|.++|+|....   .|.|++||+|.+|+.....   ..| ...+++.+.... .+      -.....+++.|  .+++|
T Consensus       294 ~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~~~~~~~~~~~~~~~~c~~g~~g~~C~~~~~~~~~~~~~~~--~~~~G  368 (423)
T 2gy5_A          294 SCNNGEMCDRFQ---GCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTL--VKPDG  368 (423)
T ss_dssp             CCTTCCEEETTT---EEECCTTCBSTTSCBCSSCCCCCEECSCCSBCCEESEEECCEEEEECTTCCCGGGEEE--ECTTS
T ss_pred             cCCCCCEecCCC---ceECCCCCcCCCCccCccCCcCcceecCCCeEEeCCCccCCcccccCCcCCCCceEEE--ECCCe
Confidence            688999998764   3999999999999987311   112 223333322100 00      00112233333  47899


Q ss_pred             EEEEEecCCCCceEEEEEECCEEEEEEecCCC
Q psy592          113 ELFRLSDQHNREYAILEIKDSKLRFRYNLNNL  144 (339)
Q Consensus       113 lL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~  144 (339)
                      ++++..+....+|++|+|.+|++.+.+++|+.
T Consensus       369 ~cl~~~~~~~~d~ial~l~~G~v~~syd~G~~  400 (423)
T 2gy5_A          369 TVLHPKDFNHTDHFSVAIFTIHRILPPDSGVW  400 (423)
T ss_dssp             CEECCSEEEECSSCEEEECCEEEECGGGCEEE
T ss_pred             EEEeCCCcCcccceeeeEEeeeEEEeecCCCc
Confidence            99998765557999999999999999998864

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.91  E-value=2e-06  Score=59.85  Aligned_cols=32  Identities=19%  Similarity=0.532  Sum_probs=27.7

Q ss_pred             CCCCCCeeec----CCCCceeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVG----SMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~----~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ||.|+|+|+.    ..++|.|.|++||+|.+||...
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~   50 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE   50 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEEC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccC
Confidence            8999999983    4457999999999999998753

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.83  E-value=4.5e-06  Score=83.75  Aligned_cols=39  Identities=28%  Similarity=0.739  Sum_probs=35.8

Q ss_pred             CcccCCCCCCCCCCCCCeeec-CCCCceeeCC-CCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVG-SMHTAKCQCL-PGWSGTGCVTPT   75 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~-~~~~~~C~C~-~g~~G~~Ce~~~   75 (339)
                      .+.|.++    ||+|+|+|++ .+++|+|.|+ +||+|.+||...
T Consensus         2 ~d~C~~~----PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYY----PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CCGGGGC----CCCTTCEEEEETTTEEEEECTTSSEETTTTCEEC
T ss_pred             CCcCCCC----CCCCCCCcCCCCCCceEeeCCCCCcCCCCCCCCc
Confidence            3689988    9999999999 8999999999 999999999864

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.66  E-value=2.1e-05  Score=65.12  Aligned_cols=42  Identities=19%  Similarity=0.529  Sum_probs=33.6

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|. ..+.|..+    ||.++|+|++..++|+|.|++||+|..|+..
T Consensus        44 ~c~-dideC~~~----pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~   85 (146)
T 1x7a_L           44 QYV-DGDQCEPN----PCLNGGLCKDDINSYECWCQVGFEGKNCELD   85 (146)
T ss_dssp             -------CCSSC----SSCTTCEEEECSSCEEEECCSSEESTTTCEE
T ss_pred             cCC-CcCcCCCC----CCCCCCEeECCCCCEEEecCCCCcCCcCCCC
Confidence            454 35789887    9999999999999999999999999999754

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.64  E-value=1.5e-05  Score=80.28  Aligned_cols=37  Identities=30%  Similarity=0.799  Sum_probs=33.6

Q ss_pred             cccCCCCCCCCCCCCCeeec-CCCCceeeCC-CCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVG-SMHTAKCQCL-PGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~-~~~~~~C~C~-~g~~G~~Ce~~   74 (339)
                      ++|.++    ||+|+|+|++ .+++|.|.|+ +||+|.+|+..
T Consensus         2 d~C~s~----PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            2 NPCCSN----PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CTTTTC----CCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCC----CCCCCCEeeCCCCCCeEEecCCCCccCCCCCCc
Confidence            579888    9999999996 5789999999 99999999975

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.63  E-value=1.7e-05  Score=65.29  Aligned_cols=38  Identities=26%  Similarity=0.669  Sum_probs=34.8

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .+.|..+    ||.++|+|++.+++|+|.|++||+|..|+..
T Consensus        47 id~C~~~----pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~   84 (142)
T 2c4f_L           47 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCETH   84 (142)
T ss_dssp             CCGGGGC----CCCTTCEEEEETTEEEEECCTTEESTTSCEE
T ss_pred             cCcCcCC----CcCCCCEEeCCCCCEEeeCCCCccCCccccC
Confidence            4678877    9999999999999999999999999999864

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.62  E-value=1.2e-05  Score=67.34  Aligned_cols=37  Identities=27%  Similarity=0.752  Sum_probs=33.4

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .+|..+    ||.++|+|++..++|+|.|++||+|.+||+.
T Consensus       120 ~~c~~~----~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce~~  156 (162)
T 1g1s_A          120 ASCQDM----SCSKQGECLETIGNYTCSCYPGFYGPECEYV  156 (162)
T ss_dssp             CCCCTT----GGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred             CCCcCC----CCCCCCEEecCCCCceEeCCCCCcCcccccC
Confidence            456666    9999999999999999999999999999875

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.54  E-value=1.2e-05  Score=69.96  Aligned_cols=43  Identities=21%  Similarity=0.530  Sum_probs=0.0

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ..|. ..+.|..+    ||.++|+|++..++|+|.|++||+|..|+..
T Consensus        37 ~~c~-dideC~~~----pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~   79 (195)
T 1nfu_B           37 NKYK-DGDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   79 (195)
T ss_dssp             ------------------------------------------------
T ss_pred             ccCC-CCcccCCC----CCCCCCEeECCCCCeeEeCCCCceecccccc
Confidence            3564 45789888    9999999999999999999999999999875

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.53  E-value=3e-05  Score=61.34  Aligned_cols=30  Identities=30%  Similarity=0.858  Sum_probs=28.4

Q ss_pred             CCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           45 YPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        45 C~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      |.++|+|++..++|+|.|++||+|..|+..
T Consensus        22 C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~   51 (114)
T 1aut_L           22 CCGHGTCIDGIGSFSCDCRSGWEGRFCQRE   51 (114)
T ss_dssp             TTTSEEECCCSSCCCEEECTTEESTTSCEE
T ss_pred             CCCcCCCCCCCCCcEeeCCCCCcCCCcCcC
Confidence            999999999999999999999999999865

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.50  E-value=3.9e-05  Score=62.49  Aligned_cols=41  Identities=22%  Similarity=0.697  Sum_probs=21.1

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .|....+.|..+    ||.++++|++..++|+|.|++||+|..|+
T Consensus        40 ~C~~~~~~C~~~----~C~~~~~C~~~~g~~~C~C~~G~~G~~C~   80 (135)
T 2vj3_A           40 RCEIDVNECVSN----PCQNDATCLDQIGEFQCICMPGYEGVHCE   80 (135)
T ss_dssp             TSCEECCTTTTC----CCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             cccccCccCCCC----CCCCCCEEeCCCCCceeeCCCCCcCCcce
Confidence            443334455544    55555555555555555555555555554

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.47  E-value=5.7e-05  Score=61.78  Aligned_cols=45  Identities=18%  Similarity=0.476  Sum_probs=38.8

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ..|....+.|..+    ||.++|+|++..++|+|.|++||+|++|+...
T Consensus        91 ~~C~~~i~~C~~~----~C~~~~~C~~~~g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           91 IHCQHNINECEVE----PCKNGGICTDLVANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             TTSCEECCTTTTC----CSCTTCEEEEETTEEEEECCTTCBSTTSCBC-
T ss_pred             CCcccCCCcCCCC----CCCCCCEeECCCCCeEeECCCCCccCCceecC
Confidence            4576556788877    99999999999999999999999999998764

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.43  E-value=2e-05  Score=64.31  Aligned_cols=43  Identities=21%  Similarity=0.530  Sum_probs=0.0

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ..|. ..+.|..+    ||.++|+|++.+++|+|.|++||+|..|+..
T Consensus        37 ~~c~-d~d~C~~~----pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~   79 (134)
T 2vh0_B           37 NKYK-DGDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   79 (134)
T ss_dssp             ------------------------------------------------
T ss_pred             ccCC-CcCcCCCC----CCCCcCCcccCCCCEEeeCCCCccCCccccC
Confidence            3464 35689887    9999999999999999999999999999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.42  E-value=6.9e-05  Score=69.60  Aligned_cols=39  Identities=26%  Similarity=0.669  Sum_probs=34.7

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .++|..+    ||.|+|+|++..++|+|.|++||+|..|+..+
T Consensus         5 ~~~C~~~----pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~   43 (317)
T 3h5c_B            5 GSPCISQ----PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAK   43 (317)
T ss_dssp             -CCTTSC----CCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCS
T ss_pred             CCcCCCC----CCCCCCEeECCCCCeEEECCCCCcCCccccCc
Confidence            4688888    99999999999999999999999999998554

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=97.41  E-value=2.5e-05  Score=64.86  Aligned_cols=37  Identities=35%  Similarity=0.839  Sum_probs=32.8

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .+|..+    ||.++|.|.+.|..|.|.|.+||+|.+||+.
T Consensus       120 ~~~~~~----pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          120 AACTNT----SCSGHGECVETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             CCCCTT----GGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCC----CCCCCCEeecCCCCeeEECCCCccCcccccc
Confidence            455555    9999999999999999999999999999875

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.33  E-value=0.0001  Score=60.28  Aligned_cols=37  Identities=19%  Similarity=0.722  Sum_probs=29.5

Q ss_pred             cccCCCCCCCCCCCCCeeecCC--CCceeeCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSM--HTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~--~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ++|..+    ||.++|+|++..  ++|+|.|++||+|..|+..
T Consensus         1 d~C~~~----pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~   39 (143)
T 4d90_A            1 DICDPN----PCENGGICLPGLADGSFSCECPDGFTDPNCSSV   39 (143)
T ss_dssp             --CCSC----CCGGGCEEEC-----CCEEECCTTCCTTTTCSC
T ss_pred             CcCCCC----cCCCCCEeeCCCCCCCEEeECCCCCCCCCCccC
Confidence            367777    999999999875  5899999999999999874

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.29  E-value=5.9e-05  Score=55.36  Aligned_cols=40  Identities=20%  Similarity=0.490  Sum_probs=28.1

Q ss_pred             CcccCCCCCCCCCCCCCeee--cCCCCceeeCCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .++|... ....|.|| +|+  .....+.|.|++||+|.+|+..
T Consensus        37 ~~pC~~~-~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           37 RDPCLRK-YKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             --CTTTT-TTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             CCCCCcc-ccCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence            3567621 12389886 995  3446889999999999999853

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.21  E-value=0.00016  Score=58.80  Aligned_cols=38  Identities=26%  Similarity=0.714  Sum_probs=28.0

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .+.|...  ..||.++|+|++..++|+|.|++||+|..|+
T Consensus         5 ideC~~~--~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~   42 (135)
T 2vj3_A            5 VDECSLG--ANPCEHAGKCINTLGSFECQCLQGYTGPRCE   42 (135)
T ss_dssp             CCTTTSS--SCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             cccccCC--CCCCCCCCEeECCCCCEEEECCCCCcCCccc
Confidence            4567632  1288888888888888888888888888775

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.12  E-value=0.00017  Score=57.88  Aligned_cols=32  Identities=22%  Similarity=0.503  Sum_probs=28.5

Q ss_pred             CCCCCCeeecCC--CCc-eeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSM--HTA-KCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~~--~~~-~C~C~~g~~G~~Ce~~~   75 (339)
                      ||+|+|+|++..  .+| +|.|++||+|..|+..+
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~   36 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   36 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC
Confidence            899999999873  677 99999999999999865

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.11  E-value=0.0003  Score=47.12  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=26.2

Q ss_pred             CCCCCCCeeec--CCCCceeeCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCVG--SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        43 ~pC~~~g~Cv~--~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ..|.|| +|.-  ..+.++|.|++||+|.+|+..
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCCce
Confidence            389886 9985  457899999999999999864

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=97.04  E-value=0.00023  Score=47.77  Aligned_cols=30  Identities=27%  Similarity=0.571  Sum_probs=25.9

Q ss_pred             CCCCCCeee--cCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|.| |+|.  ...+.+.|.|++||+|.+||..
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            8998 8996  4556789999999999999975

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.94  E-value=0.00051  Score=58.69  Aligned_cols=28  Identities=25%  Similarity=0.643  Sum_probs=25.1

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|.|||.|+.-   .+|.|++||+|+.|++.
T Consensus       154 ~C~ngG~Cv~P---~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          154 GCRNGGFCNER---RICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCCTTCEECTT---SCEECCTTCBTTTTCBC
T ss_pred             CCCCCCEeCCC---CcccCcCCCCCCCCcCC
Confidence            89999999983   37999999999999865

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=96.92  E-value=0.00055  Score=45.81  Aligned_cols=29  Identities=21%  Similarity=0.584  Sum_probs=25.0

Q ss_pred             CCCCCCeee--cCCCCceeeCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV--GSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      .|.| |+|.  ...+.+.|.|++||+|.+|+.
T Consensus        19 yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           19 FCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             TCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             cCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            7887 6997  556789999999999999985

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=96.91  E-value=0.00035  Score=59.10  Aligned_cols=43  Identities=23%  Similarity=0.580  Sum_probs=34.3

Q ss_pred             CCCCCCCcccCC-CCCCCCCCCCCeeecC-CCCceeeCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNA-HSRLHCYPEHGVCVGS-MHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        27 ~gC~~~~~~C~~-~~~~~pC~~~g~Cv~~-~~~~~C~C~~g~~G~~Ce~   73 (339)
                      ..|....+.|.. .    ||.++|+|++. .++|+|.|++||+|.+|+.
T Consensus       125 ~~C~~~~~~C~~~~----~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          125 QLCDKDLNYCGTHQ----PCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             TTTCEESCHHHHTC----CCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred             CcccCCCCCCCCCC----CCCCCCEEcCCCCCCcEeECCCCCcCcCcCC
Confidence            345534456653 4    99999999996 7899999999999999974

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=96.76  E-value=0.00058  Score=50.54  Aligned_cols=35  Identities=26%  Similarity=0.721  Sum_probs=29.5

Q ss_pred             CcccCC-CCCCCCCCCCCeeecCCCCceeeCCCCCC--CCCCC
Q psy592           33 EAVCNA-HSRLHCYPEHGVCVGSMHTAKCQCLPGWS--GTGCV   72 (339)
Q Consensus        33 ~~~C~~-~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~--G~~Ce   72 (339)
                      .+.|.. +    ||.+ |+|++..++|+|.|++||+  |..|+
T Consensus         5 ideC~~~~----~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~   42 (82)
T 1emn_A            5 MDECKEPD----VCKH-GQCINTDGSYRCECPFGYILAGNECV   42 (82)
T ss_dssp             CCSSSSTT----SCSS-SEECCCSSCCCEECCTTEEEETTEEE
T ss_pred             cccCCCCC----CcCC-CEEEecCCCEEEECCCCeECCCCccC
Confidence            467875 5    8975 8999999999999999997  88884

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.67  E-value=0.00048  Score=51.55  Aligned_cols=37  Identities=19%  Similarity=0.477  Sum_probs=30.3

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce   72 (339)
                      .+.|..+  ..+| ++++|++..++|+|.|++||+    |..|+
T Consensus         3 ideC~~~--~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~   43 (87)
T 1z6c_A            3 VDECSLK--PSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE   43 (87)
T ss_dssp             SCSSSSS--SSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEE
T ss_pred             cccccCC--CCCC-CCCEeECCCCCEEEECCCCceECCCCCcCC
Confidence            4678776  1138 889999999999999999998    78885

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=96.59  E-value=0.001  Score=54.84  Aligned_cols=32  Identities=22%  Similarity=0.534  Sum_probs=28.1

Q ss_pred             CCCCCCeeecC--CCCc-eeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGS--MHTA-KCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~--~~~~-~C~C~~g~~G~~Ce~~~   75 (339)
                      ||+|+|+|+..  ...+ +|.|++||.|..|+..+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~   48 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   48 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccc
Confidence            89999999876  4566 89999999999999775

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.20  E-value=0.0015  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           32 TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        32 ~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .++.|..+    ||.| |+|++..++|+|.|++||+|..|.
T Consensus         3 dideC~~~----pC~n-g~C~n~~g~y~C~C~~G~~g~~~~   38 (147)
T 2w86_A            3 DIDECESS----PCIN-GVCKNSPGSFICECSSESTLDPTK   38 (147)
T ss_dssp             CCCGGGGC----CSBT-SEEEEETTEEEEECCTTEEECTTS
T ss_pred             cCccCcCC----CCCC-CEeECCCCCEEeECCCCcccCCCC
Confidence            35788877    9986 799999999999999999987653

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=96.19  E-value=0.0014  Score=48.78  Aligned_cols=37  Identities=22%  Similarity=0.530  Sum_probs=29.2

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC-----CCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS-----GTGCV   72 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~-----G~~Ce   72 (339)
                      .+.|..+  ..+|.+ |+|++..++|+|.|++||+     |..|+
T Consensus         3 ideC~~~--~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~   44 (86)
T 1lmj_A            3 IDECRIS--PDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM   44 (86)
T ss_dssp             CCTTTTC--SSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred             cccccCC--CCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC
Confidence            4678765  224965 5999999999999999997     67775

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=95.99  E-value=0.00085  Score=61.20  Aligned_cols=41  Identities=22%  Similarity=0.578  Sum_probs=30.9

Q ss_pred             CCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC--CCCCCC
Q psy592           31 ATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS--GTGCVT   73 (339)
Q Consensus        31 ~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~--G~~Ce~   73 (339)
                      ...+.|...  .++|..++.|++..++|+|.|++||+  |..|..
T Consensus         3 ~DiDEC~~~--~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A            3 LAQQTCANN--RHQCSVHAECRDYATGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             ----CHHHH--GGGSCTTEEEEECSSCEEEEECTTEEECSSSEEE
T ss_pred             ccchhccCC--CCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCC
Confidence            345788633  34899999999999999999999998  677854

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.98  E-value=0.0041  Score=45.83  Aligned_cols=36  Identities=19%  Similarity=0.542  Sum_probs=28.9

Q ss_pred             CCCCCCcccC-CCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           28 GCPATEAVCN-AHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        28 gC~~~~~~C~-~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      .|. ..+.|. .+    ||.+ |+|++..++|+|.|++||+|.
T Consensus        40 ~C~-dideC~~~~----~C~~-~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A           40 ECV-DTDECSVGN----PCGN-GTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             EEE-ECCGGGTCC----TTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             ccC-CcccccCCC----CCCC-CEeECCCCCEEeECCCCeEeC
Confidence            453 346786 45    9986 699999999999999999885

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=95.83  E-value=0.0035  Score=51.04  Aligned_cols=43  Identities=23%  Similarity=0.645  Sum_probs=33.5

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      .|. .++.|...  ..+|.++++|++..++|+|.|++||+|..+..
T Consensus        92 ~C~-dideC~~~--~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~  134 (143)
T 2bou_A           92 TCQ-DVDECSSG--QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIP  134 (143)
T ss_dssp             CEE-ECCHHHHT--CCCCCTTSEEEECSSCEEEECCSSSCBCTTCC
T ss_pred             CcC-CccCccCc--CCCCCCCCEEECCCCCEEeeCCCCcccCCCCc
Confidence            453 34567631  23999999999999999999999999987654

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=95.60  E-value=0.00049  Score=62.35  Aligned_cols=43  Identities=12%  Similarity=-0.040  Sum_probs=36.8

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|.. ...|.+.    ||.++|+|++...+|+|.|++||+|.+|+..+
T Consensus        95 ~c~~-~~eC~s~----pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~  137 (267)
T 4fbr_A           95 RDKQ-NIVAVSI----KSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDT  137 (267)
T ss_dssp             CSSC-CEEEEEE----ECSSTTSEEEEEEEETTSCCEEEEEEECCCCE
T ss_pred             cccc-ccccCCC----CCCCCCEEecCCccEEeeCCCCccccCCCCCc
Confidence            3443 3468777    99999999999999999999999999999875

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=95.59  E-value=0.006  Score=40.76  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWSG   68 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~G   68 (339)
                      .+|.  +.|++..++|+|.|++||++
T Consensus        20 ~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           20 PQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             CCCC--CEeECCCCCeEEECCCCCeE
Confidence            3785  49999999999999999974

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.49  E-value=0.0062  Score=61.73  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCC-cee-eCCCCCCC--CCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHT-AKC-QCLPGWSG--TGCV   72 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~-~~C-~C~~g~~G--~~Ce   72 (339)
                      .++|..+    ||.++++|+....+ |+| .|++||+|  ..|+
T Consensus         3 IDeC~~n----PC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce   42 (634)
T 1yo8_A            3 PDGCLSN----PCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE   42 (634)
T ss_dssp             -CGGGGC----CSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC
T ss_pred             ccccCCC----CCCCCCEEecCCCCCeECCcCCCccCCCCCCcc
Confidence            4678877    99999999998865 999 99999999  7886

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=95.46  E-value=0.0044  Score=51.64  Aligned_cols=35  Identities=29%  Similarity=0.650  Sum_probs=30.4

Q ss_pred             CcccCC-CCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCCC
Q psy592           33 EAVCNA-HSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        33 ~~~C~~-~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce   72 (339)
                      ++.|.. +    ||. +|+|++..++|+|.|++||+    |..|+
T Consensus         3 ideC~~~~----~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~   42 (162)
T 1uzk_A            3 VNECLDPT----TCI-SGNCVNTPGSYICDCPPDFELNPTRVGCV   42 (162)
T ss_dssp             CCGGGSTT----SSB-TSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred             cccCCCCC----CCC-CCEeECCCCCEEEeCCCCCeECCCCCccc
Confidence            467874 5    996 68999999999999999998    88887

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=95.15  E-value=0.0071  Score=49.21  Aligned_cols=45  Identities=16%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      ..|. ..+.|... ...||.++++|++..++|+|.|++||+|..|+.
T Consensus        39 ~~C~-dideC~~~-~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~   83 (143)
T 2bou_A           39 ETCD-DINECATL-SKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAK   83 (143)
T ss_dssp             CCCE-ECCGGGC-----CCCTTEEEEECSSCEEEEECTTEEETTCCS
T ss_pred             CcCC-ccccccCC-CCCCCCCCCEEEcCCCCeEeECCCCcccCcCcc
Confidence            4564 35678653 013899999999999999999999999987754

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.12  E-value=0.0039  Score=53.16  Aligned_cols=39  Identities=21%  Similarity=0.518  Sum_probs=32.4

Q ss_pred             CCCCCCcccC----CCCCCCCCCCCCeeecCC-----CCceeeCCCCCCCCCC
Q psy592           28 GCPATEAVCN----AHSRLHCYPEHGVCVGSM-----HTAKCQCLPGWSGTGC   71 (339)
Q Consensus        28 gC~~~~~~C~----~~~~~~pC~~~g~Cv~~~-----~~~~C~C~~g~~G~~C   71 (339)
                      .|. ..+.|.    .+    ||.++|+|++..     ++|+|.|++||+|..|
T Consensus        40 ~C~-~id~C~~~~~~~----~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~   87 (186)
T 1z1y_A           40 TCE-EXNECXXETLGX----ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED   87 (186)
T ss_dssp             EEE-ECCCCSGGGTTS----EEETTEEEEECSSTTSSCSEEEEECTTEEEETT
T ss_pred             ccC-CCCcccCCCCCC----CCCCCCEeecCCCCcCCCCEECCCCCCCccCCC
Confidence            465 346887    45    999999999998     8999999999999855

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.06  E-value=0.0063  Score=51.82  Aligned_cols=44  Identities=23%  Similarity=0.518  Sum_probs=35.2

Q ss_pred             CCCCCC-CcccCCCCCCCCC-CCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           27 PGCPAT-EAVCNAHSRLHCY-PEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        27 ~gC~~~-~~~C~~~~~~~pC-~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ..|... .+.|. +    +| .++++|++..++|+|.|++||+|..|+...
T Consensus       132 ~~C~~~~~~~C~-~----~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~~~~  177 (186)
T 1z1y_A          132 XXCTXTGETACQ-L----XCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC  177 (186)
T ss_dssp             TEEEEEECCCCC-C----CCCTTTEEEEEETTEEEEEECTTCEEETTTTEE
T ss_pred             CcceEcCCCccc-c----cccccCcceecCCCCeeeECCCCCccCcccccC
Confidence            345432 35675 3    89 899999999999999999999999998663

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.04  E-value=0.0063  Score=45.14  Aligned_cols=39  Identities=23%  Similarity=0.519  Sum_probs=29.2

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ..|. ..+.|...  ..+|. +++|++..++|+|.|++||+|.
T Consensus        41 ~~C~-dideC~~~--~~~C~-~~~C~n~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           41 KNCM-DIDECQRD--PLLCR-GGVCHNTEGSYRCECPPGHQLS   79 (86)
T ss_dssp             SSEE-ECCHHHHC--SSTTT-TSEEEEETTEEEEESCTTSCCC
T ss_pred             CccC-CcccccCC--CCcCC-CCEeEcCCCCEEEECcCCcccC
Confidence            4464 35678766  11374 6899999999999999999874

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=94.83  E-value=0.0092  Score=47.07  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             CcccCCCCCCCCCCCCCeeecC-CCCceeeCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGS-MHTAKCQCLPGWSGTGC   71 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~-~~~~~C~C~~g~~G~~C   71 (339)
                      .++|..+    ||.+  +|++. .++|+|.|++||+|..+
T Consensus         4 ideC~~~----pC~~--~C~~~~~g~y~C~C~~Gy~g~~~   37 (118)
T 1dx5_I            4 VDPCFRA----NCEY--QCQPLDQTSYLCVCAEGFAPIPH   37 (118)
T ss_dssp             CCGGGGC----CCSS--EEEECSSSCEEEECCTTEEEETT
T ss_pred             cccCCCC----CCCC--CCCCCCCCCEEeECCCCccccCC
Confidence            4688777    9974  99999 89999999999998744

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.62  E-value=0.0098  Score=56.83  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=16.4

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCC---CCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWS---GTGC   71 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~---G~~C   71 (339)
                      ||..++.|++..++|.|.|++||.   |..|
T Consensus         7 ~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C   37 (400)
T 3p5b_L            7 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRC   37 (400)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECSSSCE
T ss_pred             CCCCCCEeECCCCCeEEECCCCCCcCCCCcc
Confidence            555555666666666666666665   4544

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.54  E-value=0.013  Score=43.49  Aligned_cols=39  Identities=21%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|. ..+.|..+    ||.  ++|++..++|+|.|+ ||.|..|+..
T Consensus        41 ~C~-dideC~~~----~C~--~~C~n~~g~y~C~C~-g~~G~~~~~~   79 (87)
T 1z6c_A           41 SCE-DIDECSEN----MCA--QLCVNYPGGYTCYCD-GKKGFKLAQD   79 (87)
T ss_dssp             EEE-CCCHHHHS----CCS--SEECCCSSSCCEECC-SSSCCBCCTT
T ss_pred             cCC-CcCeeCCC----CCC--CEEEccCCCEEEECC-CCcCCcccCC
Confidence            453 45677666    896  799999999999998 8888877654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=94.47  E-value=0.013  Score=59.32  Aligned_cols=41  Identities=22%  Similarity=0.420  Sum_probs=35.5

Q ss_pred             CCCCCCCcccCCCCCCCC--CCCCC---eeecCCCCceee-CCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHC--YPEHG---VCVGSMHTAKCQ-CLPGWSGTGCV   72 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~p--C~~~g---~Cv~~~~~~~C~-C~~g~~G~~Ce   72 (339)
                      ..|. ..++|..+    |  |.+++   +|++..++|+|. |++||+|..|+
T Consensus        39 ~~Ce-DiDEC~~~----p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~   85 (634)
T 1yo8_A           39 THCE-DLDECALV----PDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPV   85 (634)
T ss_dssp             SSCC-BCCTTTTS----CCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCE
T ss_pred             CCcc-ccccccCC----CCcccCCccccceeeccCceecccCCCCcccCccc
Confidence            4575 46789876    6  99999   999999999999 99999999886

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=94.34  E-value=0.0023  Score=57.88  Aligned_cols=32  Identities=16%  Similarity=0.079  Sum_probs=30.4

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      +|.++|+|++..++|+|.|++||+|.+|++.+
T Consensus        39 ~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni   70 (267)
T 4fbr_A           39 KSDDGGKTLKGTMTYNGEGPIGFRGTLSSANN   70 (267)
T ss_dssp             ECSSTTSEEEEEEEETTSCCEEEEEEECSTTE
T ss_pred             CcCCCCeecCCCCCeEEeCCCCcccccccccc
Confidence            79999999999999999999999999999875

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=94.24  E-value=0.0085  Score=57.75  Aligned_cols=35  Identities=26%  Similarity=0.695  Sum_probs=0.0

Q ss_pred             ccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           35 VCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        35 ~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|...  ..||+|+|+|.+..   +|.|++||+|..|+..
T Consensus       365 ~CD~~--t~~C~ngg~C~~~~---~C~C~~G~~G~~Ce~c  399 (426)
T 3zyj_B          365 VCDNE--LLHCQNGGTCHNNV---RCLCPAAYTGILCEKL  399 (426)
T ss_dssp             ----------------------------------------
T ss_pred             ccccC--cccCCCCCCcCCCC---CCcCCCCCcCCCCcCC
Confidence            45433  45999999999876   9999999999999865

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=94.20  E-value=0.011  Score=48.16  Aligned_cols=31  Identities=26%  Similarity=0.697  Sum_probs=26.4

Q ss_pred             CCCCCC---eeecCCC-CceeeCCCCCC----CCCCCCC
Q psy592           44 CYPEHG---VCVGSMH-TAKCQCLPGWS----GTGCVTP   74 (339)
Q Consensus        44 pC~~~g---~Cv~~~~-~~~C~C~~g~~----G~~Ce~~   74 (339)
                      +|.+++   +|++..+ +|+|.|++||+    |..|+..
T Consensus        92 ~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~  130 (142)
T 2c4f_L           92 VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT  130 (142)
T ss_dssp             TTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEES
T ss_pred             cCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCC
Confidence            555666   9999998 99999999999    9999754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.19  E-value=0.0084  Score=58.73  Aligned_cols=25  Identities=40%  Similarity=1.020  Sum_probs=12.5

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      +|.| |+|+..   ++|.|++||+|..|+
T Consensus       398 ~C~n-G~C~~~---~~C~C~~G~~G~~C~  422 (463)
T 2wg3_C          398 LCRN-GYCTPT---GKCCCSPGWEGDFCR  422 (463)
T ss_dssp             HCCS-EEECTT---SCEEECTTEESTTSC
T ss_pred             CCCC-CccCCC---CeECCCCCcCCCcCC
Confidence            3544 455532   245555555555554

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=94.02  E-value=0.012  Score=45.78  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CeeecCCCCceeeCCCCCCC---CCCC
Q psy592           49 GVCVGSMHTAKCQCLPGWSG---TGCV   72 (339)
Q Consensus        49 g~Cv~~~~~~~C~C~~g~~G---~~Ce   72 (339)
                      .+|++..++|+|.|++||+|   ..|+
T Consensus        41 ~~C~n~~g~y~C~C~~Gy~g~~g~~C~   67 (107)
T 2w2n_E           41 YVCNDLKIGYECLCPDGFQLVAQRRCE   67 (107)
T ss_dssp             SEEECCSBSCEEECCTTCEEETTTEEE
T ss_pred             CEeEeCCCCeEEECCCCccccCCCccc
Confidence            48999999999999999998   6776

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=94.00  E-value=0.023  Score=40.66  Aligned_cols=34  Identities=9%  Similarity=0.041  Sum_probs=25.4

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCC-CCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCL-PGWSG   68 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~-~g~~G   68 (339)
                      ++.|...  .++|.++++|++..++|+|.|. .||.+
T Consensus         3 idEC~~~--~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            3 VNECLTI--PEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             SCCTTCC--CCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             cccccCC--CCCCCCCCEeECCCCCeEecccCCcccc
Confidence            4567643  3389888999999999999955 46654

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=93.91  E-value=0.012  Score=50.93  Aligned_cols=45  Identities=18%  Similarity=0.567  Sum_probs=30.6

Q ss_pred             CCCCCCC-cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCCCCCC
Q psy592           27 PGCPATE-AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCVTPT   75 (339)
Q Consensus        27 ~gC~~~~-~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce~~~   75 (339)
                      ..|.... +.|...  ..+|.+  +|++..++|+|.|++||+    |..|+...
T Consensus        74 ~~Ce~~i~deC~~~--~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           74 KNCELFTRKLCSLD--NGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             -------CCGGGTG--GGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             ccccccccccccCC--CCCCCC--EeECCCCCeEEECCCCceeCCCCCccccCC
Confidence            3465433 668654  226765  999999999999999999    99997653

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=93.85  E-value=0.018  Score=47.84  Aligned_cols=36  Identities=17%  Similarity=0.440  Sum_probs=28.6

Q ss_pred             CCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCC
Q psy592           32 TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTG   70 (339)
Q Consensus        32 ~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~   70 (339)
                      .++.|..+  ..+|.+ |+|++..++|+|.|++||+|..
T Consensus       121 dideC~~~--~~~C~~-g~C~n~~gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          121 DIDECQEL--PGLCQG-GKCINTFGSFQCRCPTGYYLNE  156 (162)
T ss_dssp             ECCHHHHC--GGGGBT-SEEEECSSCEEEECCTTCCBCT
T ss_pred             ccccccCC--CCCcCC-CEeEcCCCCEEeeCCCCccCCC
Confidence            35677653  236986 7999999999999999999864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=93.75  E-value=0.015  Score=47.42  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=27.3

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTG   70 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~   70 (339)
                      ++.|..+  ..+|.+ |+|++..++|+|.|++||+|..
T Consensus       107 ideC~~~--~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A          107 IDECEVF--PGVCKN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             CCHHHHS--TTCSSS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             cccccCC--CCCCCC-CEEECCCCCEEeeCCCCCccCC
Confidence            4567644  125986 5999999999999999999753

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=93.56  E-value=0.015  Score=46.98  Aligned_cols=44  Identities=18%  Similarity=0.588  Sum_probs=29.4

Q ss_pred             CCCCCCC-cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCCCCC
Q psy592           27 PGCPATE-AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCVTP   74 (339)
Q Consensus        27 ~gC~~~~-~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce~~   74 (339)
                      ..|.... +.|...  ..+|.+  +|++..++|+|.|++||+    |..|+..
T Consensus        74 ~~C~~~i~d~C~~~--~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           74 KNCELFTRKLCSLD--NGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPT  122 (134)
T ss_dssp             -------CCGGGTG--GGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             CccccCCCCccccC--CCCCCC--EeECCCCCEEEECCCCcEECCCCCccCcC
Confidence            3465433 567653  225765  999999999999999999    9999754

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=93.52  E-value=0.028  Score=54.40  Aligned_cols=29  Identities=34%  Similarity=0.844  Sum_probs=26.2

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ||.++|+|.+  ..++|.|++||+|.+|+..
T Consensus       204 ~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~  232 (423)
T 2gy5_A          204 ACMNNGVCHE--DTGECICPPGFMGRTCEKA  232 (423)
T ss_dssp             CCCTTCEECT--TTCCEECCTTEESTTSCEE
T ss_pred             CCCCCCEEEC--CCCcEeCCCCccCCCcccc
Confidence            8999999987  5689999999999999964

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=93.51  E-value=0.02  Score=45.06  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=26.3

Q ss_pred             CCcccCC-CCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           32 TEAVCNA-HSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        32 ~~~~C~~-~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      .++.|.. +    ||  +++|++..++|+|.|++||+|.
T Consensus        79 dideC~~~~----~C--~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           79 DIDECENGG----FC--SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             ECCHHHHCS----SC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             cccccCCCC----CC--cCeEEeCCCCEEEECCCCCccC
Confidence            3466765 4    89  7899999999999999999874

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=93.47  E-value=0.021  Score=38.61  Aligned_cols=28  Identities=21%  Similarity=0.701  Sum_probs=22.7

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCC----CCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWS----GTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce~   73 (339)
                      +|.  ..|++..++|+|.|++||.    |..|..
T Consensus        10 ~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L           10 DCD--QFCHEEQNSVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             GCS--SEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcC--cEeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence            685  3899999999999999995    566643

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=93.33  E-value=0.12  Score=33.27  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy592          197 ALFVTLLISPNQVLVLVFVVYSRRREA  223 (339)
Q Consensus       197 ~il~~~~~l~~l~~~l~~~~~~~~~~~  223 (339)
                      ++.+.++++  +++.+++++|.|||+.
T Consensus        16 ~~vVGvll~--vi~~l~~~~~~RRR~~   40 (44)
T 2jwa_A           16 SAVVGILLV--VVLGVVFGILIKRRQQ   40 (44)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHH--HHHHHHHHhheehhhh
Confidence            344444433  4445555556565543

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=93.20  E-value=0.037  Score=46.15  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             CCCCCCeeecCC--CCcee-eCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSM--HTAKC-QCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~--~~~~C-~C~~g~~G~~Ce~~   74 (339)
                      ||.++++|+...  +.++| .|+++|+|++||.-
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C   35 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELC   35 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEE
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCC
Confidence            799999998865  57899 79999999999974

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=93.00  E-value=0.032  Score=57.21  Aligned_cols=37  Identities=32%  Similarity=0.805  Sum_probs=32.0

Q ss_pred             ccCCCCCCCCCCCCCeeecCCCCce---eeCCCCCCCCCCCCCC
Q psy592           35 VCNAHSRLHCYPEHGVCVGSMHTAK---CQCLPGWSGTGCVTPT   75 (339)
Q Consensus        35 ~C~~~~~~~pC~~~g~Cv~~~~~~~---C~C~~g~~G~~Ce~~~   75 (339)
                      .|..+    ||.|+++|.+..+.|.   |.|++||+|..|+...
T Consensus       436 ~C~~~----pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~  475 (690)
T 3fcs_B          436 ACQAQ----AEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSE  475 (690)
T ss_dssp             GGGTT----CCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSC
T ss_pred             CCcCC----CCCCCCcccCCCCeEeCCceEeCCCccCCceeecc
Confidence            68777    9999999997777777   9999999999998664

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=92.57  E-value=0.069  Score=49.06  Aligned_cols=40  Identities=18%  Similarity=0.525  Sum_probs=31.2

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ..|....+.|... ...||.+  .|++..++|+|.|++||+|.
T Consensus        37 ~~C~~~~~eC~~~-~~~~C~~--~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B           37 SNCELAKNECHPE-RTDGCQH--FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             SSSCCCSSSCCTT-CTTSCSS--EEECCSSSCEEECCTTEECC
T ss_pred             CccccCcccCCCC-CCCCCcC--ccccCCCeeEEecccccccc
Confidence            4577667888761 0138987  99999999999999999874

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=92.46  E-value=0.029  Score=46.00  Aligned_cols=42  Identities=24%  Similarity=0.642  Sum_probs=31.0

Q ss_pred             CCCCCCcccCCCCCCCCCCCCCee-ecCCCCceeeCCCCCC----CCCCCCC
Q psy592           28 GCPATEAVCNAHSRLHCYPEHGVC-VGSMHTAKCQCLPGWS----GTGCVTP   74 (339)
Q Consensus        28 gC~~~~~~C~~~~~~~pC~~~g~C-v~~~~~~~C~C~~g~~----G~~Ce~~   74 (339)
                      .|.. .+.|...  ..+|.+  +| ++..++|+|.|++||+    |..|+..
T Consensus        81 ~C~~-~deC~~~--~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           81 NCEL-DATCNIK--NGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             TTCE-ECCTTSG--GGSCSS--BCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred             cCCC-CccccCC--CCCCcC--CCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence            4543 2567653  125654  89 8889999999999999    9999754

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=92.21  E-value=0.054  Score=50.42  Aligned_cols=28  Identities=25%  Similarity=0.660  Sum_probs=24.3

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|.++|+|..   .++|.|++||+|..|+..
T Consensus       154 ~C~~~G~C~~---~~~C~C~~G~~G~~C~~~  181 (324)
T 2ygq_A          154 GCRNGGFCNE---RRICECPDGFHGPHCEKA  181 (324)
T ss_dssp             CCCSSCEECT---TSCEECCTTEESSSSCEE
T ss_pred             CCCCCCEECC---CCeEECCCCCcCCCCCCC
Confidence            8999999986   488999999999999864

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=92.02  E-value=0.082  Score=49.15  Aligned_cols=28  Identities=32%  Similarity=0.769  Sum_probs=24.7

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|.++|+|+.   .++|.|++||+|..|+..
T Consensus       186 ~C~~~G~C~~---~~~C~C~~G~~G~~C~~~  213 (324)
T 2ygq_A          186 RCMNGGLCVT---PGFCICPPGFYGVNCDKA  213 (324)
T ss_dssp             CCCTTCEECS---SCCEECCTTCBTTTTCBC
T ss_pred             CCCCCCEEcC---CCEEeCCCCccCCCcccC
Confidence            7999999986   578999999999999864

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=91.65  E-value=0.027  Score=43.62  Aligned_cols=37  Identities=24%  Similarity=0.485  Sum_probs=2.5

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ..|. .++.|...   .||.  ++|++..++|+|.|++||+|.
T Consensus        64 ~~C~-dideC~~~---~~C~--~~C~n~~gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           64 RRCE-DIDECQDP---DTCS--QLCVNLEGGYKCQCEEGFQLD  100 (107)
T ss_dssp             TEEE-C-------------------------------------
T ss_pred             Cccc-cccccCCC---CCcC--CeeecCCCCEEEECCCCceEC
Confidence            3465 45677631   2885  799999999999999999864

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=91.58  E-value=0.093  Score=53.78  Aligned_cols=38  Identities=24%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             CCCcccCCCCCCCCCCCCCeeecCCCCceeeC-CCCCCCCCCCC
Q psy592           31 ATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQC-LPGWSGTGCVT   73 (339)
Q Consensus        31 ~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C-~~g~~G~~Ce~   73 (339)
                      ...+.|... ...+|.++|+|+.    .+|.| ++||+|+.|+.
T Consensus       562 ~~~~~C~~~-~g~~C~~~G~C~~----g~C~C~~~Gy~G~~Ce~  600 (690)
T 3fcs_B          562 TRTDTCMSS-NGLLCSGRGKCEC----GSCVCIQPGSYGDTCEK  600 (690)
T ss_dssp             CCCTTTBCT-TSSBTSSSCEEET----TEEECCSTTCBSTTSCB
T ss_pred             CCCCcccCC-CCCCCCCCCEEeC----CEEECCCCCccCCCcCc
Confidence            445677652 0238999999976    39999 99999999997

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=91.51  E-value=0.035  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.707  Sum_probs=10.9

Q ss_pred             eecCCCCceeeCCCCCC----CCCCCC
Q psy592           51 CVGSMHTAKCQCLPGWS----GTGCVT   73 (339)
Q Consensus        51 Cv~~~~~~~C~C~~g~~----G~~Ce~   73 (339)
                      |++..++|+|.|++||+    |..|+.
T Consensus        57 C~~~~g~~~C~C~~g~~l~~d~~~C~~   83 (386)
T 3v65_B           57 CTNSEGAFQCWCEAGYELRPDRRSCKA   83 (386)
T ss_dssp             EC-----CCEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCCCeEEECCCceEcCCCCeECC
Confidence            55555666666666666    555644

>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A

Probab=91.15  E-value=0.82  Score=39.50  Aligned_cols=70  Identities=9%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             ccEEEEEEee-cCCceEEEEEecCCC-CceEEEEEEC--CEEEEEEecCCCcccceeEEe--cccccCcccccccCCcce
Q psy592           98 TTQLQLKFRT-REEFGELFRLSDQHN-REYAILEIKD--SKLRFRYNLNNLKTDEKDIWL--NAIKDSKLRFRYNLNNLK  171 (339)
Q Consensus        98 ~~~i~l~frT-~~~~GlL~~~~~~~~-~~~i~L~L~~--G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH~r~~~~~~l  171 (339)
                      ...|.+.||. ....|.||.+.+..+ ..++.+.+..  ..+.+.|...+.   ...+..  .++.||+||     .+.+
T Consensus        63 eFsi~~t~r~~~~~~~~LfsI~~~~~~~~ql~l~l~g~~~~l~~~y~~~g~---~~~~~f~~v~l~dg~WH-----~l~l  134 (209)
T 2erf_A           63 GFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGK---QHVVSVEEALLATGQWK-----SITL  134 (209)
T ss_dssp             EEEEEEEEEECTTCEEEEEEEEETTSSCEEEEEEEETTTTEEEEEEEETTE---EEEEEESSCCCCSSSEE-----EEEE
T ss_pred             CEEEEEEEEcCCCCCceEEEEEcCCCCEEEEEEEEcCCCCEEEEEEcCCCC---EEEEEEeccccCCCcEE-----EEEE
Confidence            4566677784 456688998887654 6677788863  367787754331   233433  367889999     5555


Q ss_pred             eecC
Q psy592          172 TDEK  175 (339)
Q Consensus       172 ~~~~  175 (339)
                      ++.+
T Consensus       135 ~V~~  138 (209)
T 2erf_A          135 FVQE  138 (209)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            5555

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=91.14  E-value=0.14  Score=52.48  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=28.5

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      ...|... ...+|.++|+|+.    .+|.|.+||+|+.|++
T Consensus       557 ~~~C~~~-~g~~Cs~~G~C~~----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          557 TEGCLNP-RRVECSGRGRCRC----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             SCTTBCT-TCSBTSSSCCBCS----SCBCCSTTCCTTTTCC
T ss_pred             CCCCCCC-CCCCCCCCCcCCC----CEEECCCCCcCCCCCC
Confidence            4567542 1238999999987    5799999999999997

>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}

Probab=89.77  E-value=1.7  Score=38.54  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             ccEEEEEEe-ecCC---ceEEEEEecCCCCceEEEEEE--CCEEEEEEecCCCcccceeEEec---ccccCcccccccCC
Q psy592           98 TTQLQLKFR-TREE---FGELFRLSDQHNREYAILEIK--DSKLRFRYNLNNLKTDEKDIWLN---AIKDSKLRFRYNLN  168 (339)
Q Consensus        98 ~~~i~l~fr-T~~~---~GlL~~~~~~~~~~~i~L~L~--~G~l~~~~~lG~~~~~~~~l~~~---~v~dG~WH~r~~~~  168 (339)
                      ...|-+.|| ....   ...||.+.+.++..++.+.+.  ...+.+.+.-..+  ..+.+...   ++.||+||     .
T Consensus        87 eFsil~tlr~~~~~~~~~~~L~sI~d~~~~~qlgv~l~g~~~~l~~~y~~~~g--~~q~v~F~~~~~L~Dg~WH-----k  159 (245)
T 2uur_A           87 EYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDG--SLQTAAFSNLSSLFDSQWH-----K  159 (245)
T ss_dssp             SEEEEEEEECCGGGGGCEEEEEEEECTTSCEEEEEEEEGGGTEEEEEEEBTTS--CEEEEEECCCGGGCSSSCE-----E
T ss_pred             CEEEEEEEEcCCCCCCcceEEEEEECCCCcEEEEEEEcCCCCEEEEEecCCCC--CeeEEEecCCccccCCCEE-----E
Confidence            456667777 3333   345888887655667788886  4557776654332  23444443   47889999     6


Q ss_pred             cceeecC
Q psy592          169 NLKTDEK  175 (339)
Q Consensus       169 ~~l~~~~  175 (339)
                      +.+++.+
T Consensus       160 lalsV~~  166 (245)
T 2uur_A          160 IMIGVER  166 (245)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            6666555

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=89.56  E-value=0.091  Score=34.87  Aligned_cols=28  Identities=21%  Similarity=0.669  Sum_probs=22.1

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCC----CCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWS----GTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce~   73 (339)
                      +|.+  .|++..++|+|.|++||.    |..|..
T Consensus         7 ~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~d   38 (51)
T 1kig_L            7 GCDQ--FCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             SSSS--CCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CcCC--EeEcCCCCeEEeCCCCcEECCCCCcccc
Confidence            5743  699999999999999985    666753

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=89.36  E-value=0.11  Score=40.48  Aligned_cols=25  Identities=24%  Similarity=0.720  Sum_probs=21.3

Q ss_pred             eeecCCCCceeeCCCCCC----CCCCCCC
Q psy592           50 VCVGSMHTAKCQCLPGWS----GTGCVTP   74 (339)
Q Consensus        50 ~Cv~~~~~~~C~C~~g~~----G~~Ce~~   74 (339)
                      +|++..++|+|.|++||+    |..|+..
T Consensus        67 ~C~n~~g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           67 YCLEEVGWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             EEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred             EeECCCCCEEeECCCCeeECCCCCccCcC
Confidence            999999999999999998    5666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=89.31  E-value=0.074  Score=50.27  Aligned_cols=22  Identities=27%  Similarity=0.770  Sum_probs=0.0

Q ss_pred             eecCCCCceeeCCCCCC----CCCCC
Q psy592           51 CVGSMHTAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        51 Cv~~~~~~~C~C~~g~~----G~~Ce   72 (339)
                      |.+..++|+|.|++||.    |..|+
T Consensus        17 C~~~~g~~~C~C~~G~~l~~~~~~C~   42 (386)
T 3v65_B           17 CQMIRGAVQCTCHTGYRLTEDGRTCQ   42 (386)
T ss_dssp             --------------------------
T ss_pred             CcCCCCCcEeECCCCceECCCCCccC
Confidence            34566788888888887    77663

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=89.01  E-value=0.54  Score=48.02  Aligned_cols=27  Identities=37%  Similarity=0.879  Sum_probs=24.2

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|..+|.|+..    .|.|.+||+|..|+..
T Consensus       540 ~C~ghG~C~~G----~C~Cd~G~~G~~C~~~  566 (725)
T 2e26_A          540 MCSGHGRCVQG----SCVCDEQWGGLYCDEP  566 (725)
T ss_dssp             GGGGSEEEETT----EEEECTTEESTTSCEE
T ss_pred             ccCCCcEECCC----CEeeCCCccCCCcCcc
Confidence            58889999985    7999999999999864

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=88.42  E-value=0.15  Score=44.60  Aligned_cols=28  Identities=21%  Similarity=0.497  Sum_probs=24.5

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ..|.++|+|+.    ..|.|++||+|..|+..
T Consensus        96 ~~Csg~G~C~~----g~C~C~~G~~G~~Cec~  123 (217)
T 2p28_B           96 SLCHGKGFLEC----GICRCDTGYIGKNCECQ  123 (217)
T ss_dssp             CTTTTSEEEET----TEEEECTTEESTTSCEE
T ss_pred             CccCCCceEEC----CEEECCCCccCCccccc
Confidence            47999999985    58999999999999854

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=88.13  E-value=0.18  Score=41.88  Aligned_cols=38  Identities=16%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             CcccCCCCC-CCCCCCCCeeecCCCCceeeCCCCCC----CCCCC
Q psy592           33 EAVCNAHSR-LHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        33 ~~~C~~~~~-~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce   72 (339)
                      .+.|..... ..+|.+  .|++..++|.|.|++||+    |..|.
T Consensus       124 i~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          124 IDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             CCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccc
Confidence            356765410 123865  799999999999999997    66664

>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A

Probab=87.85  E-value=3.4  Score=36.65  Aligned_cols=70  Identities=9%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             ccEEEEEEeec-CCceEEEEEecCCC-CceEEEEEEC--CEEEEEEecCCCcccceeEEe--cccccCcccccccCCcce
Q psy592           98 TTQLQLKFRTR-EEFGELFRLSDQHN-REYAILEIKD--SKLRFRYNLNNLKTDEKDIWL--NAIKDSKLRFRYNLNNLK  171 (339)
Q Consensus        98 ~~~i~l~frT~-~~~GlL~~~~~~~~-~~~i~L~L~~--G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH~r~~~~~~l  171 (339)
                      ...|.+.||.. ...|.||.+.+..+ ..++.+.+..  ..+.+.|...+.   ...+..  .++.||+||     .+.+
T Consensus        73 eFsil~tlr~~~~~~g~LfsI~~~~g~~~ql~l~~~G~~~~l~~~Y~~~g~---~~~~~f~~~~L~Dg~WH-----~lal  144 (251)
T 1za4_A           73 GFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGK---QHVVSVEEALLATGQWK-----SITL  144 (251)
T ss_dssp             EEEEEEEEEECTTCEEEEEEEEETTSSCEEEEEEEETTTTEEEEEEEETTE---EEEEEESSCCCCSSSCE-----EEEE
T ss_pred             cEEEEEEEEecCCCCeEEEEEEeCCCCEEEEEEEECCCCcEEEEEEEcCCC---eeeEEEecccccCCCEE-----EEEE
Confidence            45566777854 45689998877643 4455555433  367788754331   232332  367889999     5666


Q ss_pred             eecC
Q psy592          172 TDEK  175 (339)
Q Consensus       172 ~~~~  175 (339)
                      ++.+
T Consensus       145 sV~~  148 (251)
T 1za4_A          145 FVQE  148 (251)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            6655

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=87.56  E-value=0.16  Score=42.43  Aligned_cols=26  Identities=27%  Similarity=0.761  Sum_probs=19.9

Q ss_pred             CCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           45 YPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        45 C~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      |.+ |+|+   .+|+|.|++||+|..|+..
T Consensus       105 C~~-g~C~---~~~~C~C~~G~~G~~C~~~  130 (169)
T 2vj2_A          105 CVH-GICN---EPWQCLCETNWGGQLCDKD  130 (169)
T ss_dssp             CSS-EECS---STTCCEECTTEETTTTCEE
T ss_pred             CCC-CCcC---CCCEEeCCCCCCCCcccCC
Confidence            764 4887   4688888888888888754

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=87.55  E-value=0.76  Score=29.48  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy592          198 LFVTLLISPNQVLVLVFVVYSRRRE  222 (339)
Q Consensus       198 il~~~~~l~~l~~~l~~~~~~~~~~  222 (339)
                      +...++++  +++++++++|.|||+
T Consensus        17 VVgGv~~~--~ii~~~~~~~~RRr~   39 (44)
T 2ks1_B           17 MVGALLLL--LVVALGIGLFMRRRH   39 (44)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHTTT
T ss_pred             hhHHHHHH--HHHHHHHHHHhhhhH
Confidence            34444444  334444444444443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=87.34  E-value=0.77  Score=29.45  Aligned_cols=15  Identities=40%  Similarity=0.749  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHhh
Q psy592          208 QVLVLVFVVYSRRRE  222 (339)
Q Consensus       208 l~~~l~~~~~~~~~~  222 (339)
                      +++++++++|.|||+
T Consensus        24 ~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           24 VIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhh
Confidence            333444444444443

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=87.15  E-value=0.94  Score=46.23  Aligned_cols=27  Identities=41%  Similarity=0.942  Sum_probs=22.9

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      .|..+|.|+.   +-+|.|.+||.|+.|+.
T Consensus       191 ~C~g~G~C~~---~~~C~C~~g~~g~~C~~  217 (725)
T 2e26_A          191 MCYGHGSCIN---GTKCICDPGYSGPTCKI  217 (725)
T ss_dssp             GGGGSEEEET---TTEEEECTTEESTTSCE
T ss_pred             ccCCCcEecC---CCeeeccCCcccCcccc
Confidence            5888899954   45899999999999984

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.60  E-value=0.16  Score=49.56  Aligned_cols=27  Identities=37%  Similarity=0.810  Sum_probs=0.0

Q ss_pred             CCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           45 YPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        45 C~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      |.|+|+|+..   ++|.|++||+|..|+..
T Consensus       430 C~~~g~C~~~---~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          430 CRHGGVCVRP---NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             ------------------------------
T ss_pred             CCCCCEECCC---CEEECCCCcccCCCCCC
Confidence            3456777754   69999999999999875

>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A

Probab=86.25  E-value=4.5  Score=34.56  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             CccccCc---ceEEEeccCCCCccccEEEEEEeecC---CceEEEEEecCCCCceEEEEE-ECCEEEEEEecCCCcccce
Q psy592           77 PVTFKPQ---SYIKYALSFEPDKYTTQLQLKFRTRE---EFGELFRLSDQHNREYAILEI-KDSKLRFRYNLNNLKTDEK  149 (339)
Q Consensus        77 ~~~F~~~---s~v~y~~~~~~~~~~~~i~l~frT~~---~~GlL~~~~~~~~~~~i~L~L-~~G~l~~~~~lG~~~~~~~  149 (339)
                      .+.|...   .|+.+............+.+++||..   ..+.||..+.....+-+.|.. .+|.+.+.+  ++.   ..
T Consensus         8 ~l~Fp~~s~~~yv~l~~~~~~~l~~fTvc~wv~~~~~~~~~~~lfSy~~~~~~n~l~l~~~~~g~~~l~i--~g~---~~   82 (206)
T 3pvn_A            8 AFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTV--GGS---EI   82 (206)
T ss_dssp             EEEECSCCSSCEEEECCCCCSCBSEEEEEEEEEESGGGTCCEEEEEEEETTEEEEEEEEEETTTEEEEEE--TTE---EE
T ss_pred             EEEcCCCCCCCEEEEecCCCCCcCCEEEEEEEEecCCCCCcEEEEEEEcCCCCCEEEEEEcCCCeEEEEE--CCe---EE
Confidence            4567653   67776543222234577788888765   367888666543333344444 356666654  331   22


Q ss_pred             eEEecccccCccc
Q psy592          150 DIWLNAIKDSKLR  162 (339)
Q Consensus       150 ~l~~~~v~dG~WH  162 (339)
                      .+. .++.+|+||
T Consensus        83 ~~~-~~~~~g~W~   94 (206)
T 3pvn_A           83 LFE-VPEVTVAPV   94 (206)
T ss_dssp             EEE-CSSCCSSCE
T ss_pred             EEe-ccCCCCceE
Confidence            333 467889999

>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*

Probab=85.34  E-value=9.8  Score=32.40  Aligned_cols=80  Identities=9%  Similarity=-0.038  Sum_probs=45.4

Q ss_pred             CccccC---cceEEEeccCCCCccccEEEEEEeecC-CceEEEEEecCCCCceEEEEE-ECCEEEEEEecCCCcccceeE
Q psy592           77 PVTFKP---QSYIKYALSFEPDKYTTQLQLKFRTRE-EFGELFRLSDQHNREYAILEI-KDSKLRFRYNLNNLKTDEKDI  151 (339)
Q Consensus        77 ~~~F~~---~s~v~y~~~~~~~~~~~~i~l~frT~~-~~GlL~~~~~~~~~~~i~L~L-~~G~l~~~~~lG~~~~~~~~l  151 (339)
                      .+.|..   ..|+.+............+.+++||.. ..+.||..+.....+-+.+.. ..|.+.+.+  ++.   ...+
T Consensus         8 ~l~Fp~~s~~~yv~l~~~~~~~l~~fTvc~wv~~~~~~~~tlfSy~~~~~~nel~l~~~~~~~~~l~i--~g~---~~~~   82 (204)
T 3kqr_A            8 VFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYI--GRH---KVTS   82 (204)
T ss_dssp             EEEECSCCSSCEEEEECCCCSCBSEEEEEEEEECCCCSCEEEEEEEETTEEEEEEEEEEETTEEEEEE--TTE---EEEE
T ss_pred             EEEcCCCCCCCEEEEeCCCCCCcCCEEEEEEEEeCCCCCeEEEEEECCCCCceEEEEEcCCCeEEEEE--CCe---EEEE
Confidence            456765   467777643222234567777888765 357788665543232333333 467776665  331   2233


Q ss_pred             EecccccCccc
Q psy592          152 WLNAIKDSKLR  162 (339)
Q Consensus       152 ~~~~v~dG~WH  162 (339)
                      . .++.+|+||
T Consensus        83 ~-~~~~~g~W~   92 (204)
T 3kqr_A           83 K-VIEKFPAPV   92 (204)
T ss_dssp             E-CCCCSSCCE
T ss_pred             e-cccCCCceE
Confidence            3 577889999

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=84.50  E-value=0.29  Score=42.82  Aligned_cols=27  Identities=33%  Similarity=0.932  Sum_probs=23.5

Q ss_pred             CCCCC--CeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEH--GVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~--g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|.++  |+|..    .+|.|.+||+|..|+..
T Consensus       187 ~C~~~~~G~C~~----g~C~C~~G~~G~~C~~~  215 (217)
T 2p28_B          187 VCGGPGRGLCFC----GKCRCHPGFEGSACQHH  215 (217)
T ss_dssp             ETTCTTTEEEET----TEEEECTTEESTTSCEE
T ss_pred             CCCCCCCcEEeC----CeeECCCCCccCCcCCC
Confidence            69888  99995    38999999999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=84.21  E-value=1.2  Score=42.07  Aligned_cols=37  Identities=24%  Similarity=0.509  Sum_probs=28.7

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ..|. ..+.|...   .+|.+  .|++..++|+|.|.+||.+.
T Consensus        35 ~~C~-dideC~~~---~~C~~--~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L           35 RRCE-DIDECQDP---DTCSQ--LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             SCEE-ECCCCSTT---SSCSS--CCBCCSSSCBCCCCTTCCCC
T ss_pred             Cccc-Cchhhhcc---CCCCC--ccCCCccceeeecccccccc
Confidence            4574 46788742   28864  89999999999999999864

>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A

Probab=83.48  E-value=8  Score=33.24  Aligned_cols=83  Identities=12%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             ccccC---cceEEEecc-CCCCccccEEEEEEeec-CCceEEEEEecCCCCceEEEEEE-C--CEEEEEEecCCCcccce
Q psy592           78 VTFKP---QSYIKYALS-FEPDKYTTQLQLKFRTR-EEFGELFRLSDQHNREYAILEIK-D--SKLRFRYNLNNLKTDEK  149 (339)
Q Consensus        78 ~~F~~---~s~v~y~~~-~~~~~~~~~i~l~frT~-~~~GlL~~~~~~~~~~~i~L~L~-~--G~l~~~~~lG~~~~~~~  149 (339)
                      +.|..   .+|+.+... ..+......+.+++|+. ...+.||..+.....+-+.|... +  |...+.+.+++.  ...
T Consensus         9 ~~Fp~~s~~~yv~l~~~~~~p~l~~fTvc~wv~~~~~~~~~lfSy~~~~~~n~l~l~~~~~~~g~~~~~l~i~g~--~~~   86 (217)
T 3flp_A            9 ISFPGTQNPKFPHLRFMQTLPAVRQLTVCQRIKPFHRNTGYIFSCATSNQDNQFITSMYVKSDGTLNLGLQVNAS--SNK   86 (217)
T ss_dssp             EEECCCBTTBCCEEEESSCBCCBSEEEEEEEEEESCSSCEEEEEEEETTEEEEEEEEEEECTTSEEEEEEEETTC--CCE
T ss_pred             EEcCCCCCCCEEEEecCCCCCCCccEEEEEEEEecCCCCeeEEEEECCCCCceEEEEEeCCCCcceEEEEEECCc--cce
Confidence            44544   467777542 22223456777788843 34577886655433344444443 3  334445445432  112


Q ss_pred             eEEec-ccccCccc
Q psy592          150 DIWLN-AIKDSKLR  162 (339)
Q Consensus       150 ~l~~~-~v~dG~WH  162 (339)
                      .+..+ .+.+|+||
T Consensus        87 ~~~~~~~~~~g~W~  100 (217)
T 3flp_A           87 YISCPIEIELGQWY  100 (217)
T ss_dssp             EEEEEEECCTTSCE
T ss_pred             eEEcccccCCCCEE
Confidence            23333 57789999

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=83.09  E-value=0.38  Score=49.20  Aligned_cols=28  Identities=21%  Similarity=0.515  Sum_probs=24.1

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .+|.++|+|.    ...|.|++||+|++|+..
T Consensus       435 ~~Cs~~G~C~----~g~C~C~~Gy~G~~Cec~  462 (687)
T 3k6s_B          435 SLCHGKGFLE----CGICRCDTGYIGKNCECQ  462 (687)
T ss_dssp             STGGGSEEES----SSSEEECSSEESTTSCEE
T ss_pred             CCCCCCCEEe----CCEeEcCCCCcCCccccc
Confidence            4899899998    358999999999999943

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=83.05  E-value=0.24  Score=49.03  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=0.0

Q ss_pred             CCCCCCeeecC--CCCceeeCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGS--MHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv~~--~~~~~C~C~~g~~G~~Ce~   73 (339)
                      +|.++|.|...  ...++|.|++||+|.+||+
T Consensus       494 ~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          494 DCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             --------------------------------
T ss_pred             CCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence            78888877664  3345899999999999985

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=82.27  E-value=0.62  Score=37.91  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=25.7

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGCV   72 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~Ce   72 (339)
                      +.|... ...+|.  +.|.+..++|+|.|.+||.    |..|+
T Consensus       118 ~eC~~~-~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          118 NECTDF-VDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCG  157 (159)
T ss_dssp             CTTTC--CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             cccCCC-CCCCCC--CcccCcCCCEEEecCCCcEECCCCCccc
Confidence            456532 012674  5799999999999999998    66774

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=82.15  E-value=0.62  Score=49.32  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ||+|+|+|+.......|.|++||.|..|+...
T Consensus       504 PC~ngg~~~l~g~~C~C~C~~g~~G~~Ce~~~  535 (913)
T 3t5o_A          504 PCPNNGRPTLSGTECLCVCQSGTYGENCEKQS  535 (913)
T ss_dssp             CBTTTBEEEEETTEEEEECCTTBCSTTSCCBC
T ss_pred             CCCCCCEeecCCCceEEEccCCccccCccCcc
Confidence            99999999998888999999999999998754

>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}

Probab=80.65  E-value=16  Score=30.90  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             cccEEEEEEeecCCc-eEEEEEecC-CCCceEEEEEECCEEEEEEecCCCcccceeEEe-cccc-cCcccccccCCccee
Q psy592           97 YTTQLQLKFRTREEF-GELFRLSDQ-HNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIK-DSKLRFRYNLNNLKT  172 (339)
Q Consensus        97 ~~~~i~l~frT~~~~-GlL~~~~~~-~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~-dG~WH~r~~~~~~l~  172 (339)
                      ....|.++||+..+. --||.++.. ....|+.+.+.+|.+.+.++-.... ..+.... .++. .++||     .++|.
T Consensus        40 ~~gTI~v~fks~~~~~q~LfSIsN~k~~n~yf~lyi~~g~lg~e~R~~~~~-~~~~~~~~a~v~~~~~wn-----tvaf~  113 (191)
T 2v73_A           40 EEGTIVTRFNMNDTSIQSLIGLSDGNKANNYFSLYVSGGKVGYELRRQEGN-GDFNVHHSADVTFNRGIN-----TLALK  113 (191)
T ss_dssp             SSEEEEEEEEECCCSCEEEEEEECTTCSSCEEEEEECSSEEEEEEEECTTS-SCEEEEEEEECCCCSSCE-----EEEEE
T ss_pred             CCcEEEEEEecCCCcceEEEEccCCCCccceEEEEEeCCEEEEEEecCCCc-eeeeeecccceecCCceE-----EEEEE
Confidence            456799999998833 357777753 3568999999999999998764321 1222222 2333 26999     44554


Q ss_pred             ec
Q psy592          173 DE  174 (339)
Q Consensus       173 ~~  174 (339)
                      .+
T Consensus       114 ~d  115 (191)
T 2v73_A          114 IE  115 (191)
T ss_dssp             EE
T ss_pred             Ec
Confidence            44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	2e-09
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	1e-08
d1h30a2	218	b.29.1.4 (A:461-678) Growth-arrest-specific protei	1e-06
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	2e-06
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	3e-06
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	1e-05
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	2e-05
d1l3ya_	41	g.3.11.6 (A:) Integrin beta EGF-like domains {Huma	7e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	4e-04

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 71  CVTPTSPVT--------FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
           CV  + P              S+I  A      K    ++L+ RT  E G LF ++  ++
Sbjct: 4   CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINH 63

Query: 123 REYAILEIKDSKLRFRYNLNN 143
            ++A +++++    F Y+L +
Sbjct: 64  ADFATVQLRNGFPYFSYDLGS 84

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 8/146 (5%)

Query: 60  CQCLPGWSGTGCVTPTSPVTFK--PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRL 117
             C+P        +      F   P   +++             +  FRT +  G L   
Sbjct: 21  LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKR---LQPTRLVAEFDFRTFDPEGILLFA 77

Query: 118 SDQHNREYAILEIKDSKLRFRYNLNN-LKTDEKDIWLNAIKDSKLRFRYNLNN--LKTDE 174
               +  + +L ++  +L  +   N   +       +N      +       N  +K + 
Sbjct: 78  GGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNR 137

Query: 175 KDIWLNAVAVNDGQWHFVKTGSALFV 200
             +   AVA +  Q         L V
Sbjct: 138 DAVMKIAVAGDLFQPERGLYHLNLTV 163

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 24/211 (11%), Positives = 52/211 (24%), Gaps = 39/211 (18%)

Query: 59  KCQCL----PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGEL 114
           + QC      G    G    +    +                +  ++    R   + G L
Sbjct: 7   RMQCFSVTERGSFYPG----SGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVL 62

Query: 115 FRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDE 174
           F L     R    + +  + + +                          +  L  L  + 
Sbjct: 63  FALWAPDLRA---VPLSVALVDYHSTKK--------------------LKKQLVVLAVEH 99

Query: 175 KDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDV 234
             + L  + V DGQ H         VT+ +   +  + V     +   +  +       +
Sbjct: 100 TALALMEIKVCDGQEH--------VVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVL 151

Query: 235 RENIINYDDEGGGEDDMTAFDITPLQIPIGG 265
             ++ +      G          P+     G
Sbjct: 152 ERHLRSPVLTFAGGLPDVPVTSAPVTAFYRG 182

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 28/114 (24%)

Query: 80  FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRY 139
           F    + K    F+       ++ +FRT    G L  +S Q   +   +E+ D KL F  
Sbjct: 8   FDGTGFAKAVGGFKVGLDLL-VEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDEKLMFHV 65

Query: 140 NLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
           +    +         AI D+++                      + +GQWH V 
Sbjct: 66  DNGAGRF-------TAIYDAEIPGH-------------------MCNGQWHKVT 93

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 67  SGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSD-QHNREY 125
            G   +   + VT  P +    A   E    +   +L  +T    G +          +Y
Sbjct: 12  DGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDY 71

Query: 126 AILEIKDSKLRFRYNLNN 143
             L I D  ++  Y+L +
Sbjct: 72  IALAIVDGFVQMMYDLGS 89

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 75  TSPVTFKPQSYIKYAL--SFEPDKYTTQLQLKFRTREEFGELFRL-SDQHNREYAILEIK 131
           T+ +  K    I Y    +  P     +L + F T ++   L R+ S     +Y  L I 
Sbjct: 4   TTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 63

Query: 132 DSKLRFRYNLNNLKTDEK--DIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQW 189
             K+  ++N+       +  +  +N  K   +RF  +  N         +        Q 
Sbjct: 64  QGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQL 123

Query: 190 HFVKTGSALFV 200
               + + + +
Sbjct: 124 TIFNSQATIII 134

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 73  TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKD 132
            P + +TF      K + SFE            RT +  G +F        ++ +L ++D
Sbjct: 13  EPIAVMTFDLTKITKTSSSFE-----------VRTWDPEGVIFYGDTNPKDDWFMLGLRD 61

Query: 133 SKLRFRYNLNN 143
            +   + + + 
Sbjct: 62  GRPEIQLHNHW 72

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)

Query: 36 CNAHSRLHCY-PEHGVCVGSMHTAKCQCLPGWSGTGC 71
          C  ++   C  P  G+C       KC+C PG+ G+ C
Sbjct: 7  CERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSAC 39

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 47 EHGVCVGSMHTAKCQCLPGWSGTGC 71
           HG C+  + +  C C  GW G  C
Sbjct: 17 GHGTCIDGIGSFSCDCRSGWEGRFC 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.45
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.41
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	99.17
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.17
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	99.16
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.14
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.07
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.06
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.06
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.04
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.04
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.01
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.95
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.91
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.88
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.83
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.8
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.78
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	98.61
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.59
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.41
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.32
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.67
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.63
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.51
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.39
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.89
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	96.52
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	96.19
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	96.17
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	96.0
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1szba2	45	Mannose-binding protein associated serine protease	94.53
d1nt0a3	45	Mannose-binding protein associated serine protease	94.52
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	93.75
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	93.12
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	92.4
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	91.86
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	91.55
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	89.33
d2erfa1	206	Thrombospondin 1 N-terminal domain {Human (Homo sa	81.88
d1b09a_	206	C-reactive protein (CRP) {Human (Homo sapiens) [Ta	81.77
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	80.13

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.2e-13  Score=116.55  Aligned_cols=109  Identities=13%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             CCCCCeeecCCCCceeeCCCCCCCCCCCCCCCCccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCc
Q psy592           45 YPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNRE  124 (339)
Q Consensus        45 C~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~~~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~  124 (339)
                      |+++.+|.+     .|.|.+...+..++.......|.+.+++...+.... .....|+|+|||++++|+|||+.+....+
T Consensus        11 ~~~~~~Ce~-----~~~c~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~~-~~~~~i~~~FrT~~~~GlL~~~~~~~~~~   84 (191)
T d1h30a1          11 SQDMDTCED-----ILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQ-PTRLVAEFDFRTFDPEGILLFAGGHQDST   84 (191)
T ss_dssp             ETTTTEEEE-----CCCSSCBCCCEETTEEECCC-----CCEEEECCBSS-CCCCEEEEEEEECCSSEEEEEEESCTTSE
T ss_pred             cccCCCCcc-----cccccCCCcCccceeeEeccccCCCceEEEEeccCC-CCceEEEEEEEeCCCCeEEEEEcCCCCCc
Confidence            555666653     245666554444443323456777766655543222 23579999999999999999998766678


Q ss_pred             eEEEEEECCEEEEEEecCCCcccceeEEe-cccccCccc
Q psy592          125 YAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDSKLR  162 (339)
Q Consensus       125 ~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG~WH  162 (339)
                      |+.|+|.+|++.+.+++|+.   ...+.. ..++||+||
T Consensus        85 fi~l~l~~G~l~~~~~~g~~---~~~~~~~~~v~Dg~WH  120 (191)
T d1h30a1          85 WIVLALRAGRLELQLRYNGV---GRVTSSGPVINHGMWQ  120 (191)
T ss_dssp             EEEEEEETTEEEEEEEETTE---EEEEEEEEECCSSCCE
T ss_pred             EEEEEEECCEEEEEEEcCCC---cEEecCCccccCCCEE
Confidence            99999999999999999874   334443 478999999

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=8.9e-13  Score=112.63  Aligned_cols=83  Identities=22%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             Cccc--cCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-
Q psy592           77 PVTF--KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-  153 (339)
Q Consensus        77 ~~~F--~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-  153 (339)
                      ...|  .+.||+.|.+.....+....|+|+|||++++|+|||++.....+|+.|+|.+|++++.+++|+.   +..+.. 
T Consensus        16 ~~~fg~s~~s~~~~~~~~~~~~~~~~i~~~frT~~~~GlL~~~~~~~~~dfi~l~l~~G~l~~~~~~g~~---~~~~~~~   92 (189)
T d1dyka1          16 SKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSG---DTSTMIP   92 (189)
T ss_dssp             CEECCSSTTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSC---EEEEECC
T ss_pred             ceecCCCCCceEEEecCcccccccEEEEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEECCCc---cEEecCC
Confidence            3445  5689999987665555678899999999999999999876667899999999999999999874   344443 


Q ss_pred             cccccCccc
Q psy592          154 NAIKDSKLR  162 (339)
Q Consensus       154 ~~v~dG~WH  162 (339)
                      ..++||+||
T Consensus        93 ~~v~Dg~WH  101 (189)
T d1dyka1          93 TKINDGQWH  101 (189)
T ss_dssp             SCCCSSSCE
T ss_pred             cEeeCCCEE
Confidence            479999999

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=6.1e-11  Score=99.68  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             Ccccc-CcceEEEeccCCC--CccccEEEEEEeecCCceEEEEEecCC-CCceEEEEEECCEEEEEEecCCCcccceeEE
Q psy592           77 PVTFK-PQSYIKYALSFEP--DKYTTQLQLKFRTREEFGELFRLSDQH-NREYAILEIKDSKLRFRYNLNNLKTDEKDIW  152 (339)
Q Consensus        77 ~~~F~-~~s~v~y~~~~~~--~~~~~~i~l~frT~~~~GlL~~~~~~~-~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~  152 (339)
                      ++.|. +++|+.|.+++..  .....+|+|.|||++++|+|||..... ..+|+.+.|.+|++.+.++.|+.   +..+.
T Consensus         5 t~~F~~g~~~i~y~~~~~~~~~~~~~~is~~FrT~~~~G~Ll~~~~~~~~~~~l~l~l~~G~l~~~~~~g~~---~~~~~   81 (177)
T d2r1da1           5 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTD---DIAIE   81 (177)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSC---EEEEE
T ss_pred             cEEeCCCCeEEEEECCCccCCCccccEEEEEEEeCCCCEEEEEEcCCCCCCcEEEEEEECCEEEEEEcCCCc---eEEEE
Confidence            56674 6899999975432  234568999999999999999987543 46899999999999999999874   33332


Q ss_pred             -e-cccccCccc----ccccCCcceeec
Q psy592          153 -L-NAIKDSKLR----FRYNLNNLKTDE  174 (339)
Q Consensus       153 -~-~~v~dG~WH----~r~~~~~~l~~~  174 (339)
                       . ..++||+||    .|..+..++.++
T Consensus        82 ~~~~~vnDg~WH~V~v~~~~~~~~L~VD  109 (177)
T d2r1da1          82 ESNAIINDGKYHVVRFTRSGGNATLQVD  109 (177)
T ss_dssp             CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             eCCceecCCCEEEEEEEEECCEEEEEEC
Confidence             2 378999999    444444444443

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.17  E-value=1e-10  Score=99.92  Aligned_cols=84  Identities=15%  Similarity=0.307  Sum_probs=65.6

Q ss_pred             CCccccCcceEEEeccCCC--------------CccccEEEEEEeecCCceEEEEEecC-CCCceEEEEEECCEEEEEEe
Q psy592           76 SPVTFKPQSYIKYALSFEP--------------DKYTTQLQLKFRTREEFGELFRLSDQ-HNREYAILEIKDSKLRFRYN  140 (339)
Q Consensus        76 ~~~~F~~~s~v~y~~~~~~--------------~~~~~~i~l~frT~~~~GlL~~~~~~-~~~~~i~L~L~~G~l~~~~~  140 (339)
                      .++.|.|.+|+.|......              .....+|+|+|||++++|+|||++.. ...+|+.|+|.+|++.+.++
T Consensus         7 ~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLly~~~~~~~~df~~l~L~~G~l~~~~~   86 (195)
T d1pz7a_           7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYD   86 (195)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEE
T ss_pred             cCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEE
Confidence            4788999999999643221              01246799999999999999998643 34679999999999999999


Q ss_pred             cCCCcccceeEE-ecccccCccc
Q psy592          141 LNNLKTDEKDIW-LNAIKDSKLR  162 (339)
Q Consensus       141 lG~~~~~~~~l~-~~~v~dG~WH  162 (339)
                      +|+.   ...+. ..+++||+||
T Consensus        87 ~g~~---~~~~~~~~~v~dg~wh  106 (195)
T d1pz7a_          87 LGSK---PVVLRSTVPINTNHWT  106 (195)
T ss_dssp             SSSC---CEEEEEEEECCSSSCE
T ss_pred             cCCC---CEEEeCCceecCCCEE
Confidence            9874   33333 2479999999

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=97.75  Aligned_cols=86  Identities=12%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             cceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe-cccccCcc
Q psy592           83 QSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL-NAIKDSKL  161 (339)
Q Consensus        83 ~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~-~~v~dG~W  161 (339)
                      -+|+.|.....   ....|+|+|||++++|+|||.......+|+.|+|.+|++.+.+++|..   +..+.. ..++||+|
T Consensus        15 ~~~~~~~~~~~---~~~~isf~FrT~~~~GlL~~~~~~~~~~fi~L~L~~G~l~~~~~~g~~---~~~~~s~~~~~dg~W   88 (170)
T d1d2sa_          15 IAVMTFDLTKI---TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWA---QLTVGAGPRLDDGRW   88 (170)
T ss_dssp             SEEEEEEGGGC---CCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSC---EEEEECSCCCCSSSC
T ss_pred             eEEEEEeccCC---ceeEEEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEeCCCc---ceEEecccccCCCce
Confidence            46777765443   367899999999999999999876667999999999999999999874   444443 47889999


Q ss_pred             c----ccccCCcceeec
Q psy592          162 R----FRYNLNNLKTDE  174 (339)
Q Consensus       162 H----~r~~~~~~l~~~  174 (339)
                      |    +|..++.++.++
T Consensus        89 H~V~i~~~~~~~~L~VD  105 (170)
T d1d2sa_          89 HQVEVKMEGDSVLLEVD  105 (170)
T ss_dssp             EEEEEEEETTEEEEEET
T ss_pred             EEEEEEEECCEEEEEEC
Confidence            9    444444333333

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=8.1e-11  Score=99.67  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             CccccCcceEEEeccCCCCccccEEEEEEeecCCceEEEEEecCCCCceEEEEEECCEEEEEEecCCCcccceeEEe---
Q psy592           77 PVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWL---  153 (339)
Q Consensus        77 ~~~F~~~s~v~y~~~~~~~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~l~~---  153 (339)
                      ...|.|.+|+.|...... .....|+|+|||++++|+|||+++. ..+|+.++|.+|++.+.+++|.+.  ...+..   
T Consensus         5 G~~F~G~~y~~~~~~~~~-~~~~~is~~frT~~~~GlLl~~~~~-~~d~~~l~l~~G~l~~~~~~g~~~--~~~~~~~~~   80 (185)
T d1dyka2           5 GTYFDGTGFAKAVGGFKV-GLDLLVEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDEKLMFHVDNGAGR--FTAIYDAEI   80 (185)
T ss_dssp             SEEEEEEEEEECCSSBCC-BSEEEEEEEEEESCSCEEEEEEECS-SSCEEEEEEETTEEEEEEESSSCC--EEEEECCCS
T ss_pred             ceEECCCceEEEcCCCCC-CceEEEEEEEEECCCCEEEEEeCCC-CCceEEEEEECCeEEEEEECCCCe--EEEEEEccC
Confidence            356999999998754332 2356899999999999999998765 468999999999999999998752  122221   


Q ss_pred             -cccccCccc
Q psy592          154 -NAIKDSKLR  162 (339)
Q Consensus       154 -~~v~dG~WH  162 (339)
                       ..++||+||
T Consensus        81 ~~~l~Dg~WH   90 (185)
T d1dyka2          81 PGHMCNGQWH   90 (185)
T ss_dssp             TTSTTSSSCE
T ss_pred             CceecCCCEE
Confidence             267899999

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-11  Score=76.18  Aligned_cols=38  Identities=21%  Similarity=0.663  Sum_probs=34.9

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      ++.|.++    ||+|+|+|++.+++|+|.|++||+|++||..
T Consensus         1 Id~C~~~----PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           1 VNECVSN----PCQNDATCLDQIGEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCTTTTC----CCCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             CcCCcCC----CCCCCCEEECCCCCEEEeCCCCCccCcCeeC
Confidence            3678888    9999999999999999999999999999864

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.4e-11  Score=73.77  Aligned_cols=35  Identities=23%  Similarity=0.692  Sum_probs=32.9

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      ++|.++    ||+|+|+|++.+++|+|.|++||+|++||
T Consensus         1 d~C~~~----PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASS----PCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTC----CSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCC----CCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            468888    99999999999999999999999999997

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.7e-11  Score=76.00  Aligned_cols=37  Identities=24%  Similarity=0.651  Sum_probs=34.2

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +.|.++    ||+|+|+|++.+++|+|.|++||+|++||..
T Consensus         1 D~C~~~----PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTC----CCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred             CcCCCC----CCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence            468888    9999999999999999999999999999865

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.1e-11  Score=77.88  Aligned_cols=38  Identities=34%  Similarity=0.817  Sum_probs=34.9

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ++|.++    ||+|+|+|++.|++|+|.|++||+|++||+.+
T Consensus         2 ~~C~~~----pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~v   39 (39)
T d1g1ta2           2 AACTNT----SCSGHGECVETINNYTCKCDPGFSGLKCEQIV   39 (39)
T ss_dssp             CCCCTT----GGGGSEEEEEETTEEEEEECTTEESTTSCEEC
T ss_pred             CcccCC----cCCCCcEEECCCCCEEEeCCCCCcCcCcCccC
Confidence            478888    99999999999999999999999999999753

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.9e-11  Score=74.14  Aligned_cols=37  Identities=22%  Similarity=0.594  Sum_probs=34.5

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      .++|.++    ||.|+|+|++.+++|+|.|++||+|++||.
T Consensus         3 ~d~C~~~----PC~ngg~C~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           3 GDQCESN----PCLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCTTTTC----CCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             cccCCCC----CCCCCcEEEcCCCCEEEECCCCCCCCCCCC
Confidence            4789988    999999999999999999999999999973

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.01  E-value=4.3e-11  Score=74.19  Aligned_cols=36  Identities=25%  Similarity=0.693  Sum_probs=33.8

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .++|.++    ||+|+|+|++.+++|+|.|++||+|++||
T Consensus         2 ~d~C~~~----PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           2 GDQCASS----PCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CCGGGGC----CCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             cccCCCC----CCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            4689888    99999999999999999999999999996

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.2e-11  Score=74.80  Aligned_cols=37  Identities=27%  Similarity=0.752  Sum_probs=34.2

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +.|.++    ||.|+|+|++.|++|+|.|++||+|++|+..
T Consensus         2 ~~C~~~----pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDM----SCSKQGECLETIGNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCCTT----GGGGSEEEEECSSSEEEEECTTEESTTSCEE
T ss_pred             CcccCC----cCCCCcEEECCCCCeEEeCCCCccCCCCCCC
Confidence            478888    9999999999999999999999999999864

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-10  Score=75.51  Aligned_cols=39  Identities=28%  Similarity=0.817  Sum_probs=35.8

Q ss_pred             CCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCCCC
Q psy592           32 TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        32 ~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      ..++|.++    ||+| |+|++.|++|+|.|++||+|++|++++
T Consensus         7 ~~~~C~~~----PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1           7 LEHPCASL----CCGH-GTCIDGIGSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             SCCSSSST----TTTS-EEECCCSSCCCEEECTTEESTTSCEEC
T ss_pred             CCCcccCC----CCCC-CEEECCCCCCeEeCCCCCcCCCccccc
Confidence            45799998    9987 899999999999999999999999876

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.1e-10  Score=71.04  Aligned_cols=39  Identities=26%  Similarity=0.691  Sum_probs=33.2

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      ++.|...  ..||+|+|+|++.+++|+|.|++||+|++|+.
T Consensus         3 ideC~~~--~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           3 VDECSLG--ANPCEHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCTTTSS--SCSSSTTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CccccCC--CCCCCCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            4567532  23999999999999999999999999999984

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.3e-09  Score=69.01  Aligned_cols=36  Identities=28%  Similarity=0.653  Sum_probs=31.7

Q ss_pred             cCCCCCCCCCCCCCeeecC--CCCceeeCCCCCCCCCCCCCC
Q psy592           36 CNAHSRLHCYPEHGVCVGS--MHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        36 C~~~~~~~pC~~~g~Cv~~--~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      |..+    ||+|+|+|++.  +.+|+|.|++||+|++||..+
T Consensus         1 C~~n----PC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEP----RCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             CSSC----CSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             CcCC----CCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            5566    99999999986  468999999999999999875

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=6.7e-10  Score=70.32  Aligned_cols=37  Identities=30%  Similarity=0.809  Sum_probs=32.8

Q ss_pred             cccCCCCCCCCCCCCCeeecC-CCCceeeCC-CCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGS-MHTAKCQCL-PGWSGTGCVTP   74 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~-~~~~~C~C~-~g~~G~~Ce~~   74 (339)
                      ++|..+    ||+|+|+|+.. +++|+|.|+ +||+|++|++.
T Consensus         2 d~C~~~----PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           2 NPCCSN----PCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             CTTTTC----CCCTTCEEEEEETTEEEEECTTSSEETTTTCEE
T ss_pred             CcCcCC----CCCCCCEEEECCCCCEEEeCcCCCcCCcCcCcC
Confidence            578888    99999999975 889999997 69999999864

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.78  E-value=7.8e-10  Score=70.38  Aligned_cols=38  Identities=29%  Similarity=0.723  Sum_probs=33.7

Q ss_pred             CcccCCCCCCCCCCCCCeeecC-CCCceeeCCC-CCCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGS-MHTAKCQCLP-GWSGTGCVTP   74 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~-~~~~~C~C~~-g~~G~~Ce~~   74 (339)
                      .++|..+    ||+|+|+|+.. +++|+|+|++ ||+|++|++.
T Consensus         2 id~C~~n----PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~p   41 (42)
T d1q4ga2           2 VNPCCYY----PCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP   41 (42)
T ss_dssp             CCGGGGC----CCCTTCEEEEETTTEEEEECTTSSEETTTTCEE
T ss_pred             CccCcCC----CCCCCCEeeeCCCCCEEEECCCCCcCCcCcCcC
Confidence            4689988    99999999974 8899999986 8999999863

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.4e-08  Score=86.10  Aligned_cols=85  Identities=11%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             CccccCcceEEEeccCCC--------CccccEEEEEEeecCCceEEEEEecCCCCceE--EEEEECCEEEEEEecCCCc-
Q psy592           77 PVTFKPQSYIKYALSFEP--------DKYTTQLQLKFRTREEFGELFRLSDQHNREYA--ILEIKDSKLRFRYNLNNLK-  145 (339)
Q Consensus        77 ~~~F~~~s~v~y~~~~~~--------~~~~~~i~l~frT~~~~GlL~~~~~~~~~~~i--~L~L~~G~l~~~~~lG~~~-  145 (339)
                      ...|.|.+|+.|......        ......|+|+|||++++|+|||++..+ ..++  .+.+.++++.+.+..+... 
T Consensus        17 G~~F~G~g~~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~-~~~~~l~~~~~~~~~~~~~g~~~~~~   95 (218)
T d1h30a2          17 GSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPD-LRAVPLSVALVDYHSTKKLKKQLVVL   95 (218)
T ss_dssp             SEEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEGG-GTEEEEEEEEESCC-----CCCEEEE
T ss_pred             ccEeCCCEEEEEeccccccccccccccceeEEEEEEEEcCCCCcEEEEEecCC-CceEEEEEEeeEEEEEEccCcceEEe
Confidence            346899999999743221        112457999999999999999988653 3444  4455555555544332110 


Q ss_pred             -ccceeE--EecccccCccc
Q psy592          146 -TDEKDI--WLNAIKDSKLR  162 (339)
Q Consensus       146 -~~~~~l--~~~~v~dG~WH  162 (339)
                       .....+  ...+++||+||
T Consensus        96 ~~~~~~~~~~~~~lnDg~WH  115 (218)
T d1h30a2          96 AVEHTALALMEIKVCDGQEH  115 (218)
T ss_dssp             EETTEEEEEEECCTTSSCCE
T ss_pred             ccCceEEeccccccCCCCeE
Confidence             001111  12368999999

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.1e-08  Score=66.90  Aligned_cols=40  Identities=38%  Similarity=0.875  Sum_probs=33.8

Q ss_pred             CCCCCCCcccCCCCCCCCCCCCCeeec--CCCCceeeCCCCCCCCCCCCC
Q psy592           27 PGCPATEAVCNAHSRLHCYPEHGVCVG--SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        27 ~gC~~~~~~C~~~~~~~pC~~~g~Cv~--~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .+|+    +|..+    ||.|+|+|+.  ...+|+|.|++||+|++||..
T Consensus         4 ~~C~----~c~~~----~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   45 (53)
T d3egfa_           4 PGCP----SSYDG----YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             CCCC----TTSSC----CSCSSCEEEEESSSSCEEEECCTTCCSSSSCCC
T ss_pred             CCCC----CCCCC----CCCCCcEeeccCCCCCeEeECCCCCcCCCCccC
Confidence            4564    67777    9999999974  567999999999999999975

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.2e-08  Score=69.39  Aligned_cols=38  Identities=24%  Similarity=0.559  Sum_probs=32.8

Q ss_pred             cccCCCCCCCCCCCCCeee-----cCCCCceeeCCCCCCCCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCV-----GSMHTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv-----~~~~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      +.|..+    ||+|+|+|.     +.+++|.|.|++||+|.+|+..+
T Consensus         7 ~ec~~~----~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~   49 (63)
T d1haea_           7 AEKEKT----FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV   49 (63)
T ss_dssp             CHHHHT----TSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEEC
T ss_pred             CCCcCC----cCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCC
Confidence            467777    999999995     45789999999999999999875

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=6.8e-08  Score=62.99  Aligned_cols=36  Identities=22%  Similarity=0.603  Sum_probs=31.1

Q ss_pred             ccCCCCCCCCCCCCCeeec--CCCCceeeCCCCCCCCCCCCC
Q psy592           35 VCNAHSRLHCYPEHGVCVG--SMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        35 ~C~~~~~~~pC~~~g~Cv~--~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|..+    ||.|+|+|+.  ...+|+|.|++||+|.+|+..
T Consensus         6 ~c~~~----~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_           6 LSHDG----YCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             STTCC----EECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCC----CCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence            56666    9999999975  456899999999999999864

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.3e-05  Score=51.15  Aligned_cols=30  Identities=27%  Similarity=0.655  Sum_probs=25.4

Q ss_pred             CCCCCCeee--cCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      +|.| |.|.  .....++|.|++||+|.+|+..
T Consensus        13 yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_          13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             cCcC-CEEEEeCCCCccEeECCCCceecCceee
Confidence            9998 6774  4567899999999999999865

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=52.27  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=27.3

Q ss_pred             CCCCCCeee-cCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV-GSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv-~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|.|||.|. .....++|.|+.||+|.+||..
T Consensus        15 yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_          15 YCIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             SCTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             CccCCeEEEeCCCCCcEeECCCCCeeCCCccc
Confidence            899999996 4567899999999999999865

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.5e-05  Score=51.58  Aligned_cols=31  Identities=16%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             CCCCCCeee-cCCCCceeeCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV-GSMHTAKCQCLPGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv-~~~~~~~C~C~~g~~G~~Ce~~   74 (339)
                      .|.|||.|. .....++|.|++||+|.+||..
T Consensus        14 yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~   45 (49)
T d1moxc_          14 FCFHGTCRFLVQEDKPACVCHSGYVGARCEHA   45 (49)
T ss_dssp             SSTTEEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             EeeCCeEEecCCCCCcEeECCCCCEecCCccc
Confidence            899999884 5567899999999999999864

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=3.4e-05  Score=45.75  Aligned_cols=32  Identities=22%  Similarity=0.537  Sum_probs=27.1

Q ss_pred             CCCCCCeeecC--C-CCceeeCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGS--M-HTAKCQCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~--~-~~~~C~C~~g~~G~~Ce~~~   75 (339)
                      .|+|+|+|+..  + +-..|.||.+|.|.+||.+.
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            59999999986  2 34689999999999999764

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.4e-05  Score=48.55  Aligned_cols=36  Identities=25%  Similarity=0.660  Sum_probs=28.8

Q ss_pred             CCcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC--CCCC
Q psy592           32 TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS--GTGC   71 (339)
Q Consensus        32 ~~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~--G~~C   71 (339)
                      .++.|...    +|..+++|++.+++|.|.|++||+  |..|
T Consensus         4 DidEC~~~----~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1           4 DMDECKEP----DVCKHGQCINTDGSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CCCSSSST----TSCSSSCCCCCSSCCCCCCCTTEEESSSCE
T ss_pred             ceeccCCc----CCCCCCEeECCCCCeEeECCCCcccCCCcc
Confidence            35788765    565678999999999999999996  5454

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=8.5e-05  Score=46.40  Aligned_cols=31  Identities=26%  Similarity=0.617  Sum_probs=24.3

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      +.|...  ...|. +|.|++..++|+|.|++||.
T Consensus         3 dEC~~~--~~~C~-~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           3 DECQRD--PLLCR-GGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             CHHHHC--SSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred             cccCCC--CCCCC-CCEeECCCCCeEEeCCCCCe
Confidence            456544  23574 68999999999999999996

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=8.5e-05  Score=46.82  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=27.1

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      ++.|...  ..+|. ++.|++..++|+|.|++||.+.
T Consensus         3 idEC~~~--~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           3 IDECRIS--PDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCTTTTC--SSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             ccccCCC--CCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            4677654  34675 5899999999999999999764

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.0001  Score=45.43  Aligned_cols=27  Identities=22%  Similarity=0.573  Sum_probs=24.2

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWSGT   69 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~G~   69 (339)
                      +.|..++.|++.+++|+|.|.+||+|.
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCC
Confidence            478889999999999999999999753

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00028  Score=44.17  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=23.7

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGW   66 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~   66 (339)
                      +++|...   +.| -++.|++..++|.|.|++||
T Consensus         3 idEC~~~---~~~-c~~~C~Nt~G~y~C~C~~Gy   32 (43)
T d1uzka1           3 VNECLDP---TTC-ISGNCVNTPGSYICDCPPDF   32 (43)
T ss_dssp             CCGGGST---TSS-BTSEEEEETTEEEEECCTTC
T ss_pred             ccccCCC---CcC-cCCEeECCCCCEEEecCCCC
Confidence            4678654   134 35899999999999999999

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00046  Score=42.53  Aligned_cols=29  Identities=28%  Similarity=0.755  Sum_probs=24.5

Q ss_pred             CCCCCCeee--cCCCCceeeCCCCCCCCCCCC
Q psy592           44 CYPEHGVCV--GSMHTAKCQCLPGWSGTGCVT   73 (339)
Q Consensus        44 pC~~~g~Cv--~~~~~~~C~C~~g~~G~~Ce~   73 (339)
                      -|-| |+|.  .+.+.+.|.|+.||+|.+|+.
T Consensus         9 yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           9 FCIH-GECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             CCSS-EEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             EeEC-cEEeecCcCCCceeECCCCCeecCccc
Confidence            5876 9995  456789999999999999974

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.00053  Score=42.82  Aligned_cols=32  Identities=19%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             CcccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC
Q psy592           33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        33 ~~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ++.|...  ...|. +++|++..++|.|.|++||.
T Consensus         3 inEC~~~--~~~c~-~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           3 IDECQEL--PGLCQ-GGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             CCHHHHC--GGGGB-TSEEEECSSCEEEECCTTCC
T ss_pred             cccccCC--CCCcC-CCEEECCCCCeEeECCCCCe
Confidence            3556543  23575 46999999999999999985

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0011  Score=40.95  Aligned_cols=33  Identities=27%  Similarity=0.634  Sum_probs=24.8

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC----CCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS----GTGC   71 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~----G~~C   71 (339)
                      ++|...   .+|.  ..|++..++|+|.|++||.    |..|
T Consensus         2 dEC~~~---~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~~C   38 (41)
T d1i0ua2           2 DECQDP---DTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC   38 (41)
T ss_dssp             CTTTTT---TSCS--SCEECSSSCCEECCCTTEEECTTTCCE
T ss_pred             ccCCCC---CCCC--CEeECCCCCEEeECCCCCeECCCCCcc
Confidence            456432   3674  5899999999999999986    5555

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=42.62  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      +|.-...|++.+++|+|.|++||+
T Consensus        19 ~~~c~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_          19 QPQCQHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SCTTSSEEEEETTEEEEECSTTCE
T ss_pred             CCCccCEeEcCCCCeEeECCCCCe
Confidence            344456899999999999999995

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.00097  Score=40.80  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=23.7

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSG   68 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~G   68 (339)
                      +.|...   .+|.  ..|++..++|.|.|++||+.
T Consensus         3 dEC~~~---~~C~--~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           3 DECENG---GFCS--GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             CHHHHC---SSCS--SEEEECSSSEEEEECSSSSC
T ss_pred             cccCCC---cCcc--CEeeCCCCCeEeECCCCCee
Confidence            455432   3785  58999999999999999975

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0031  Score=36.84  Aligned_cols=24  Identities=21%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             CCCCCCCeeecCCCCceeeCCCCCC
Q psy592           43 HCYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        43 ~pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      +||+| |+|.+-.++|.|.|..||.
T Consensus         8 npCGn-GTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           8 NPCGN-GTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CSSSS-SCEEECSSSEEECCSSSSC
T ss_pred             CccCC-ceeeecccceEEeecCCcC
Confidence            49965 7999999999999999984

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.01  Score=37.00  Aligned_cols=20  Identities=20%  Similarity=0.561  Sum_probs=18.2

Q ss_pred             CCeeecCCCCceeeCCCCCC
Q psy592           48 HGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        48 ~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ...|++..++|+|.|++||.
T Consensus        15 ~~~C~Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2          15 DHHCHNHLGGFYCSCRAGYV   34 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             CCCCccCCCCeEEECCCCCe
Confidence            46899999999999999984

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.52  E-value=0.0071  Score=37.80  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=17.9

Q ss_pred             CCeeecCCCCceeeCCCCCC
Q psy592           48 HGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        48 ~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ...|++..++|+|.|++||.
T Consensus        15 ~~~C~Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHNYLGGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             CCEeecCCCCEEEeCCCCCE
Confidence            45899999999999999983

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.02  Score=35.11  Aligned_cols=22  Identities=18%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      +|.  ..|++..++|+|.|++||.
T Consensus        10 ~C~--~~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2          10 PCS--HFCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             CSS--SEEEEETTEEEEECCTTCE
T ss_pred             CCC--CEeecCCCCEEEeCCCCCE
Confidence            675  4899999999999999984

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.025  Score=34.23  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             cccCCCCCCCCCCCCCeeecCCCCceeeCCCCCC
Q psy592           34 AVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWS   67 (339)
Q Consensus        34 ~~C~~~~~~~pC~~~g~Cv~~~~~~~C~C~~g~~   67 (339)
                      ++|..+  ...|.  ..|++..++|+|.|++||.
T Consensus         3 neC~~~--nggC~--h~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           3 NECLDN--NGGCS--HVCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             CGGGTG--GGGCS--SEEEECSSSEEEECCTTCC
T ss_pred             ccCCCC--CCCCc--CEEEcCCCCEEEECCCCCE
Confidence            466544  23564  4899999999999999994

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.40  E-value=0.028  Score=36.49  Aligned_cols=32  Identities=22%  Similarity=0.446  Sum_probs=24.9

Q ss_pred             CCCCCCeeecC--CCCcee-eCCCCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGS--MHTAKC-QCLPGWSGTGCVTPT   75 (339)
Q Consensus        44 pC~~~g~Cv~~--~~~~~C-~C~~g~~G~~Ce~~~   75 (339)
                      ||.+++.|...  .+...| .|.++|+|++|+.-.
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~   36 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCD   36 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEEC
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccC
Confidence            67777877543  456778 699999999999874

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.028  Score=34.21  Aligned_cols=22  Identities=41%  Similarity=1.220  Sum_probs=18.7

Q ss_pred             CCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           47 EHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        47 ~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .+|+|+..    +|.|.+||+|+.|+
T Consensus        19 ~hG~C~~G----~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLCFCG----KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEEETT----EEEECTTCCTTTTC
T ss_pred             CCCeEECC----EEEcCCCCcccCcc
Confidence            36889763    79999999999997

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.023  Score=31.73  Aligned_cols=25  Identities=32%  Similarity=0.830  Sum_probs=18.6

Q ss_pred             CCCCCCeeecCCCCceeeCCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCV   72 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~~g~~G~~Ce   72 (339)
                      .|.++|.|.=.    .|.|.+||+|..|.
T Consensus         4 ~C~ghG~C~CG----~C~C~~gw~G~~CN   28 (31)
T d1jv2b4           4 MCSGHGQCSCG----DCLCDSDWTGYYCN   28 (31)
T ss_dssp             CSCCCTTCCST----TTCCCTTEESSSSC
T ss_pred             eccCCCcccCC----ceEccCCccccccc
Confidence            46666666432    59999999999985

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.093  Score=32.02  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=21.9

Q ss_pred             CCCCCCeeecCCCCceeeCC-CCCCCCCCCCC
Q psy592           44 CYPEHGVCVGSMHTAKCQCL-PGWSGTGCVTP   74 (339)
Q Consensus        44 pC~~~g~Cv~~~~~~~C~C~-~g~~G~~Ce~~   74 (339)
                      -|..+|+|+-.    +|.|. ++|.|+.||+-
T Consensus        12 iCng~G~C~cG----~C~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5          12 LCSGRGKCECG----SCVCIQPGSYGDTCEKC   39 (43)
T ss_dssp             GGGGTEEEETT----EEEECCSSCBSTTSCBC
T ss_pred             EECCCCEEECC----EeEeCCCCccCCccccC
Confidence            58778888853    79995 79999999863

>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=5.5  Score=31.37  Aligned_cols=62  Identities=10%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             ccEEEEEEeecC-CceEEEEEecCCC-CceEEEEEE--CCEEEEEEecCCCcccceeEEe--cccccCccc
Q psy592           98 TTQLQLKFRTRE-EFGELFRLSDQHN-REYAILEIK--DSKLRFRYNLNNLKTDEKDIWL--NAIKDSKLR  162 (339)
Q Consensus        98 ~~~i~l~frT~~-~~GlL~~~~~~~~-~~~i~L~L~--~G~l~~~~~lG~~~~~~~~l~~--~~v~dG~WH  162 (339)
                      ...|..+||+.. +.|.||......+ ..++.+.+.  .+.+.+.+..++.   ...+..  .++.+|+||
T Consensus        60 ~Fti~~~~r~~~~~~~~l~s~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~~---~~~~~~~~~~l~d~~Wh  127 (206)
T d2erfa1          60 GFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGK---QHVVSVEEALLATGQWK  127 (206)
T ss_dssp             EEEEEEEEEECTTCEEEEEEEEETTSSCEEEEEEEETTTTEEEEEEEETTE---EEEEEESSCCCCSSSEE
T ss_pred             CEEEEEEEEcCCCCCCEEEEEEcCCCCEEEEEEEEcCCCCEEEEEEeCCCc---eEEEEeccccccCCCEE
Confidence            456777889875 4588887765432 344555555  4567777665542   222332  367889999

>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=5.4  Score=31.28  Aligned_cols=81  Identities=9%  Similarity=0.088  Sum_probs=42.9

Q ss_pred             Ccccc---CcceEEEeccCCCCccccEEEEEEeecCC---ceEEEEEecCCCCceEEEEEECCEEEEEEecCCCccccee
Q psy592           77 PVTFK---PQSYIKYALSFEPDKYTTQLQLKFRTREE---FGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKD  150 (339)
Q Consensus        77 ~~~F~---~~s~v~y~~~~~~~~~~~~i~l~frT~~~---~GlL~~~~~~~~~~~i~L~L~~G~l~~~~~lG~~~~~~~~  150 (339)
                      ++.|.   ..+|+..............|+++||+...   ...+|..+.....+.+.+...++.. +.+..+.    ...
T Consensus         8 af~F~~~s~~dYv~l~~~~~~~~~~fTvs~Wvk~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~   82 (206)
T d1b09a_           8 AFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIG-YSFTVGG----SEI   82 (206)
T ss_dssp             EEEECSCCSSCEEEECCCCCSCBSEEEEEEEEECSGGGTCCEEEEEEECSSCTTSEEEEEETTTE-EEEEETT----EEE
T ss_pred             EEEcCCCCCCCEEEECCCCCCCCcCEEEEEEEEeCCCCCCcceEEEecCCCCceeEEEEecCCcc-EEEEecc----ccE
Confidence            56783   36788775433333346788888886432   3345544444334445554443322 2322332    223


Q ss_pred             EEecccccCccc
Q psy592          151 IWLNAIKDSKLR  162 (339)
Q Consensus       151 l~~~~v~dG~WH  162 (339)
                      .....+.+++||
T Consensus        83 ~~~~~~~~~~W~   94 (206)
T d1b09a_          83 LFEVPEVTVAPV   94 (206)
T ss_dssp             EEECCCCCCSCE
T ss_pred             EecCcccCCcEE
Confidence            333567789999

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.18  Score=31.98  Aligned_cols=25  Identities=24%  Similarity=0.844  Sum_probs=20.8

Q ss_pred             CeeecCCCCceeeCCCCCC----CCCCCC
Q psy592           49 GVCVGSMHTAKCQCLPGWS----GTGCVT   73 (339)
Q Consensus        49 g~Cv~~~~~~~C~C~~g~~----G~~Ce~   73 (339)
                      ..|++..++|+|.|++||.    |..|+.
T Consensus        12 h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1          12 QFCHEEQNSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             SEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             cEeecCCCCeEeEcCCCCEECCCCCcccc
Confidence            4799999999999999985    667753